Query 048673
Match_columns 243
No_of_seqs 142 out of 1596
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 20:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 22.4 55 0.004 20.3 4.2 28 214-241 32-59 (100)
2 d2o9xa1 a.184.1.1 (A:1-153) Re 18.6 32 0.0024 23.3 2.5 26 8-33 81-106 (153)
3 d1hvwa_ g.3.6.2 (A:) Atracotox 16.0 25 0.0018 15.7 0.9 10 19-28 5-14 (26)
4 d1n1ca_ a.184.1.1 (A:) TorA sp 15.3 42 0.0031 23.7 2.6 29 5-33 105-134 (207)
5 d1s9ua_ a.184.1.1 (A:) Putativ 12.6 34 0.0025 24.4 1.3 28 6-33 104-132 (207)
6 d2idga1 a.184.1.1 (A:1-160) Hy 12.4 52 0.0038 22.6 2.2 23 9-33 70-92 (160)
7 d1klla_ d.32.1.2 (A:) Mitomyci 12.3 36 0.0026 21.5 1.2 26 5-30 10-35 (128)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.5 1.3E+02 0.0097 18.6 3.9 25 216-240 40-64 (107)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 10.9 13 0.00097 23.1 -1.4 24 217-240 24-47 (91)
10 d1u6la_ d.32.1.7 (A:) Hypothet 9.4 46 0.0033 21.5 0.9 22 2-23 8-30 (137)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.39 E-value=55 Score=20.27 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673 214 LEVWAMMPMIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~~~L~~~~~~~ 241 (243)
..+++.+.+.++...+.+...|+|+|+.
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 3345556666666777777777776653
No 2
>d2o9xa1 a.184.1.1 (A:1-153) Reductase assembly protein AF0173 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.59 E-value=32 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=20.9
Q ss_pred cchHHHHHHhcCCCCCCCCCChhhHH
Q 048673 8 ASEAVDYFSSIGCSPCIAMNPAEFPI 33 (243)
Q Consensus 8 ~~~~~~~F~~~g~~~p~~~npad~~~ 33 (243)
..++.+++++.|+..+.+..|.||+-
T Consensus 81 ~~~~~~~y~~~Gl~~~~~~e~~Dhl~ 106 (153)
T d2o9xa1 81 SLRAAELYSKYGLNYVYESEPPDHIS 106 (153)
T ss_dssp HHHHHHHHHHTTCCCCCSSSCTTBHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCHHH
Confidence 36788999999998776667889864
No 3
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=16.04 E-value=25 Score=15.72 Aligned_cols=10 Identities=20% Similarity=-0.127 Sum_probs=7.0
Q ss_pred CCCCCCCCCC
Q 048673 19 GCSPCIAMNP 28 (243)
Q Consensus 19 g~~~p~~~np 28 (243)
|-|||-++|-
T Consensus 5 gqpcpynenc 14 (26)
T d1hvwa_ 5 GQPCPYNENC 14 (26)
T ss_dssp TSBCSSTTSB
T ss_pred CCcCCCCccc
Confidence 6788876663
No 4
>d1n1ca_ a.184.1.1 (A:) TorA specific chaperone TorD {Shewanella massilia [TaxId: 76854]}
Probab=15.32 E-value=42 Score=23.73 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=22.4
Q ss_pred ccCcchHHHHHHhcCCCCCCC-CCChhhHH
Q 048673 5 SRKASEAVDYFSSIGCSPCIA-MNPAEFPI 33 (243)
Q Consensus 5 ~G~~~~~~~~F~~~g~~~p~~-~npad~~~ 33 (243)
..+..++.+++++.|+..++. ..|.||+-
T Consensus 105 ~~~~~~v~~~y~~~Gl~~~~~~~e~~DHl~ 134 (207)
T d1n1ca_ 105 GEQHQQMSEFLHQSKLQVQSHFPEPADHLA 134 (207)
T ss_dssp GGGHHHHHHHHHHHCCCCCCSSCCGGGBHH
T ss_pred cHHHHHHHHHHHHcCCccCCCCCCCccHHH
Confidence 345578999999999988854 56888764
No 5
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic dehydrogenases YnfI {Salmonella typhimurium [TaxId: 90371]}
Probab=12.63 E-value=34 Score=24.41 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=18.5
Q ss_pred cCcchHHHHHHhcCCCCCCC-CCChhhHH
Q 048673 6 RKASEAVDYFSSIGCSPCIA-MNPAEFPI 33 (243)
Q Consensus 6 G~~~~~~~~F~~~g~~~p~~-~npad~~~ 33 (243)
.+..++.+++++.|+..++. ..|.||+-
T Consensus 104 ~~~~~v~~~y~~~Gl~~~~~~~ep~DHi~ 132 (207)
T d1s9ua_ 104 DSTLALRQWMRENGIQFEMQQNEPEDHFG 132 (207)
T ss_dssp HHHHHHHHHHHHTTCC------CCTTBHH
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCCccHHH
Confidence 34578999999999988754 56888764
No 6
>d2idga1 a.184.1.1 (A:1-160) Hypothetical protein AF0160 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.36 E-value=52 Score=22.55 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=17.5
Q ss_pred chHHHHHHhcCCCCCCCCCChhhHH
Q 048673 9 SEAVDYFSSIGCSPCIAMNPAEFPI 33 (243)
Q Consensus 9 ~~~~~~F~~~g~~~p~~~npad~~~ 33 (243)
+++.+|+++.|++.. .+|+||+-
T Consensus 70 ~~v~~FY~~~Gle~~--~ep~DHIa 92 (160)
T d2idga1 70 SVMKDFYERYGFQAS--ELHADHIA 92 (160)
T ss_dssp HHHHHHHHHTTCCCC--SSCTTBHH
T ss_pred HHHHHHHHHcCCCCC--CCCCcHHH
Confidence 455579999999864 57989864
No 7
>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}
Probab=12.34 E-value=36 Score=21.45 Aligned_cols=26 Identities=8% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccCcchHHHHHHhcCCCCCCCCCChh
Q 048673 5 SRKASEAVDYFSSIGCSPCIAMNPAE 30 (243)
Q Consensus 5 ~G~~~~~~~~F~~~g~~~p~~~npad 30 (243)
--+.+++++|++.+|+.++....-.+
T Consensus 10 V~D~~~s~~FY~~Lg~~~~~~~~~~~ 35 (128)
T d1klla_ 10 VEDMAKSMEFYRKMGVEIPAEADSAP 35 (128)
T ss_dssp ESCHHHHHHHHHHTTCCCCTTGGGCS
T ss_pred cCCHHHHHHHHHHhCCcccccccccc
Confidence 34678999999999999987554433
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.48 E-value=1.3e+02 Score=18.59 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 216 VWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 216 ~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
+++.+++.++..++.+...|+|+++
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC
Confidence 4444455555566667677766554
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.89 E-value=13 Score=23.07 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 217 WAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 217 ~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
+.++.+.++..++.+...|+|+++
T Consensus 24 i~~iv~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 24 LMLIVVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp HTTTTTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHHHHHhhheeeeccC
Confidence 345555666677778788877655
No 10
>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.39 E-value=46 Score=21.46 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.0
Q ss_pred cccccCcchHHHHHHhc-CCCCC
Q 048673 2 SLYSRKASEAVDYFSSI-GCSPC 23 (243)
Q Consensus 2 ~~Y~G~~~~~~~~F~~~-g~~~p 23 (243)
+.|.|++++|++|+++. |++..
T Consensus 8 l~f~g~a~eAl~FY~~~fG~e~~ 30 (137)
T d1u6la_ 8 LIFNGNCREAFSCYHQHLGGTLE 30 (137)
T ss_dssp EEESSCHHHHHHHHHHHHCSEEE
T ss_pred EEECCCHHHHHHHHHHHCCCEEE
Confidence 45789999999999654 76653
Done!