BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048677
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 43 PSDCCDDWEGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLG 102
PS C V C+ + + + T ++ + Y + L +F +L RLDL
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 63
Query: 103 NWFTGIYENRAYDSFGSLKQLKILD 127
N T + +D L QL + D
Sbjct: 64 NQLT-VLPAGVFDKLTQLTQLSLND 87
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 43 PSDCCDDWEGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLG 102
PS C V C+ + + + T ++ + Y + L +F +L RLDL
Sbjct: 12 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 71
Query: 103 NWFTGIYENRAYDSFGSLKQLKILD 127
N T + +D L QL + D
Sbjct: 72 NQLT-VLPAGVFDKLTQLTQLSLND 95
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 41 GMPSDCCDDWEGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDL 100
PS C V C+ + + + T ++ + Y + L +F +L RLDL
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDL 61
Query: 101 LGNWFTGIYENRAYDSFGSLKQLKILD 127
N T + +D L QL + D
Sbjct: 62 DNNQLT-VLPAGVFDKLTQLTQLSLND 87
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 36 VGEDDGMPSDCCDDWEGVKCNATTRRVMQL-SLNNTKRLNHYYGTSASLLNMSLFHPFEE 94
+ DD SDCC+ +QL +L++ + LN Y SL + F+E
Sbjct: 357 LSHDDIETSDCCN--------------LQLRNLSHLQSLNLSYNEPLSLKTEA----FKE 398
Query: 95 LQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129
+L+LL FT + A F +L LK+L+L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
>pdb|3L1W|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|B Chain B, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|C Chain C, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|D Chain D, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|E Chain E, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|F Chain F, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
Length = 257
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 59 TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLL 101
+++Q ++K L +YG + N + P+ EL+ +D +
Sbjct: 175 VHQLVQKKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYI 217
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 75 HYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129
++ G S ++L F + L RLDL N +Y + SFG L LK +D
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFS 156
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 71 KRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129
K+L + ++ +S F P + + D+L FT + +YD LK +KI+DLG
Sbjct: 52 KKLEEIFPSTLENSILSEFDPEKVSKNCDVL---FTALPAGASYDLVRELKGVKIIDLG 107
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 53 VKCNATTRRVMQLSLNNTKRLNHYYGT-----SASLLNMSLFHPFEELQRLDLLGNWFTG 107
V T ++ +L +T L +Y G S + L ++HPF ++QRL+ L
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL-----Y 284
Query: 108 IYENR--AYDSFGS-LKQLKILDL 128
I NR A + +G + LK+LDL
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDL 308
>pdb|2GFN|A Chain A, Crystal Structure Of Hth-Type Transcriptional Regulator
Pksa Related Protein From Rhodococcus Sp. Rha1
pdb|2GFN|B Chain B, Crystal Structure Of Hth-Type Transcriptional Regulator
Pksa Related Protein From Rhodococcus Sp. Rha1
Length = 209
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 51 EGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMSL 88
EG+ TTR V + S +T LNHY+G+ LL +L
Sbjct: 25 EGISA-VTTRAVAEESGWSTGVLNHYFGSRHELLLAAL 61
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 LNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129
L+ S F P L L+LLGN + + E F L +L+IL +G
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVG 157
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 53 VKCNATTRRVMQLSLNNTKRLNHYYGT-----SASLLNMSLFHPFEELQRLDLLGNWFTG 107
V T ++ +L +T L +Y G S + L ++HPF ++QRL+ L
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL-----Y 278
Query: 108 IYENR--AYDSFGS-LKQLKILDL 128
I NR A + +G + LK+LDL
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDL 302
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 LNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129
L+ S F P L L+LLGN + + E F L +L+IL +G
Sbjct: 89 LSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVG 131
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 278 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 336
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 337 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 384
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 278 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 336
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 337 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 384
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 278 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 336
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 337 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 384
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 278 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 336
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 337 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 384
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 278 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 336
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 337 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 384
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 19 KSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-------NATTRRVMQLSLNNTK 71
K+FF S + +IL W E + D W G++ + + ++++Q + +
Sbjct: 282 KTFF-DSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREVE 340
Query: 72 RLN------------------HYYGTSASLLNMSLFHPFEELQRLDLL 101
RL YG +A+ ++ + +L++ D++
Sbjct: 341 RLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVLFKVRDLEKADVI 388
>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
pdb|3NVL|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
Length = 571
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 24 SSVSDNKILPSWVGEDDGMPSDCCDDWEGVKC-NATTRRVMQLS 66
+++SD P + DDG P +D + V C N RV+++S
Sbjct: 266 ANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMS 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,983,334
Number of Sequences: 62578
Number of extensions: 141008
Number of successful extensions: 269
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 27
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)