Query 048677
Match_columns 129
No_of_seqs 197 out of 1513
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.5 6.3E-14 1.4E-18 120.5 9.6 84 8-110 27-110 (968)
2 PLN03150 hypothetical protein; 99.3 8.5E-12 1.8E-16 103.9 9.1 108 6-129 368-498 (623)
3 PF08263 LRRNT_2: Leucine rich 99.0 6.3E-10 1.4E-14 61.7 4.5 42 9-56 2-43 (43)
4 PLN03150 hypothetical protein; 98.4 2.7E-07 5.9E-12 77.1 3.9 65 60-128 442-522 (623)
5 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.7E-11 50.9 3.5 56 61-129 2-57 (61)
6 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 44.7 2.4 35 62-106 3-37 (44)
7 PLN00113 leucine-rich repeat r 97.9 1.3E-05 2.9E-10 69.4 3.8 35 90-128 544-578 (968)
8 PF00560 LRR_1: Leucine Rich R 97.4 0.0001 2.2E-09 34.8 1.3 22 94-120 1-22 (22)
9 PF12799 LRR_4: Leucine Rich r 97.2 0.00029 6.2E-09 39.0 2.1 32 93-129 1-32 (44)
10 PF13855 LRR_8: Leucine rich r 96.3 0.0025 5.4E-08 37.1 1.8 33 93-129 1-33 (61)
11 KOG0617 Ras suppressor protein 96.1 0.00082 1.8E-08 48.6 -1.1 64 60-129 33-110 (264)
12 KOG0472 Leucine-rich repeat pr 95.7 0.0066 1.4E-07 49.0 2.0 37 88-129 500-536 (565)
13 PF13504 LRR_7: Leucine rich r 95.4 0.011 2.3E-07 26.1 1.4 17 93-110 1-17 (17)
14 PF14580 LRR_9: Leucine-rich r 95.3 0.012 2.6E-07 42.0 2.2 35 91-128 86-120 (175)
15 PLN03210 Resistant to P. syrin 95.1 0.03 6.4E-07 50.3 4.4 35 90-128 654-688 (1153)
16 KOG0444 Cytoskeletal regulator 94.8 0.0054 1.2E-07 52.1 -1.0 64 60-129 103-181 (1255)
17 PLN03210 Resistant to P. syrin 94.7 0.041 8.8E-07 49.5 4.3 55 61-129 779-833 (1153)
18 KOG0618 Serine/threonine phosp 94.7 0.023 5E-07 49.8 2.5 36 89-129 448-484 (1081)
19 KOG4579 Leucine-rich repeat (L 94.6 0.0059 1.3E-07 42.7 -0.9 56 59-128 52-107 (177)
20 PRK15387 E3 ubiquitin-protein 94.4 0.023 5E-07 49.2 1.9 31 94-129 423-453 (788)
21 PF14580 LRR_9: Leucine-rich r 94.1 0.042 9.1E-07 39.2 2.5 53 61-129 43-96 (175)
22 KOG0617 Ras suppressor protein 93.9 0.012 2.6E-07 42.7 -0.6 37 88-128 97-134 (264)
23 cd00116 LRR_RI Leucine-rich re 93.9 0.031 6.6E-07 42.1 1.5 36 93-128 193-228 (319)
24 KOG4237 Extracellular matrix p 93.8 0.044 9.6E-07 44.1 2.3 51 60-123 67-117 (498)
25 KOG0472 Leucine-rich repeat pr 93.7 0.03 6.6E-07 45.3 1.2 53 60-128 252-304 (565)
26 KOG4658 Apoptotic ATPase [Sign 93.6 0.027 5.8E-07 49.4 0.9 36 89-128 567-602 (889)
27 smart00369 LRR_TYP Leucine-ric 93.5 0.063 1.4E-06 25.8 1.8 18 92-110 1-18 (26)
28 smart00370 LRR Leucine-rich re 93.5 0.063 1.4E-06 25.8 1.8 18 92-110 1-18 (26)
29 cd00116 LRR_RI Leucine-rich re 93.2 0.034 7.4E-07 41.8 0.7 70 60-129 81-173 (319)
30 KOG4194 Membrane glycoprotein 92.6 0.062 1.3E-06 45.4 1.5 33 92-128 292-324 (873)
31 PF13516 LRR_6: Leucine Rich r 92.3 0.024 5.1E-07 26.8 -0.8 19 92-110 1-19 (24)
32 KOG4658 Apoptotic ATPase [Sign 92.1 0.062 1.4E-06 47.2 0.9 45 80-129 572-626 (889)
33 KOG4194 Membrane glycoprotein 91.8 0.12 2.6E-06 43.8 2.3 36 89-128 193-228 (873)
34 KOG0618 Serine/threonine phosp 91.7 0.078 1.7E-06 46.6 1.1 62 62-129 47-122 (1081)
35 PRK15387 E3 ubiquitin-protein 91.6 0.044 9.6E-07 47.5 -0.4 49 61-110 403-462 (788)
36 PRK15370 E3 ubiquitin-protein 91.1 0.3 6.5E-06 42.3 4.0 61 61-129 221-291 (754)
37 PRK15370 E3 ubiquitin-protein 90.4 0.37 8E-06 41.8 3.9 29 93-128 346-374 (754)
38 KOG0444 Cytoskeletal regulator 89.8 0.11 2.4E-06 44.5 0.4 63 62-129 80-158 (1255)
39 KOG1259 Nischarin, modulator o 89.7 0.14 3E-06 40.3 0.8 18 89-106 325-342 (490)
40 KOG2739 Leucine-rich acidic nu 89.5 0.23 5.1E-06 37.6 1.8 14 93-106 91-104 (260)
41 KOG4237 Extracellular matrix p 88.9 0.33 7.1E-06 39.3 2.4 66 59-128 273-353 (498)
42 KOG2982 Uncharacterized conser 88.2 0.21 4.5E-06 39.2 0.8 22 89-110 93-114 (418)
43 COG5238 RNA1 Ran GTPase-activa 88.2 0.31 6.6E-06 37.8 1.8 40 89-128 88-127 (388)
44 smart00368 LRR_RI Leucine rich 87.4 0.47 1E-05 23.3 1.6 14 93-106 2-15 (28)
45 COG4886 Leucine-rich repeat (L 86.4 0.27 5.8E-06 38.5 0.6 35 89-128 159-193 (394)
46 smart00365 LRR_SD22 Leucine-ri 85.8 0.69 1.5E-05 22.6 1.7 15 92-106 1-15 (26)
47 COG4886 Leucine-rich repeat (L 82.4 1.1 2.4E-05 35.1 2.4 35 90-129 136-171 (394)
48 smart00364 LRR_BAC Leucine-ric 80.8 1.1 2.3E-05 22.0 1.2 17 93-110 2-18 (26)
49 KOG1259 Nischarin, modulator o 80.5 1.2 2.6E-05 35.2 1.9 32 92-129 306-337 (490)
50 KOG3665 ZYG-1-like serine/thre 80.4 0.72 1.6E-05 39.7 0.8 40 89-129 216-258 (699)
51 KOG2739 Leucine-rich acidic nu 79.5 0.98 2.1E-05 34.3 1.2 37 89-129 61-99 (260)
52 KOG0531 Protein phosphatase 1, 78.6 1.3 2.9E-05 35.3 1.7 15 60-74 95-109 (414)
53 KOG1909 Ran GTPase-activating 75.3 0.94 2E-05 36.0 0.0 34 91-128 90-127 (382)
54 KOG1859 Leucine-rich repeat pr 74.3 0.74 1.6E-05 40.2 -0.8 21 89-110 205-225 (1096)
55 KOG0532 Leucine-rich repeat (L 73.7 1.7 3.6E-05 36.9 1.2 30 94-128 212-241 (722)
56 KOG4579 Leucine-rich repeat (L 69.9 0.22 4.9E-06 34.9 -4.0 52 61-127 78-129 (177)
57 KOG3207 Beta-tubulin folding c 66.4 2.8 6E-05 34.4 0.9 36 89-128 168-204 (505)
58 KOG1644 U2-associated snRNP A' 65.9 7.1 0.00015 29.0 2.9 32 92-128 87-120 (233)
59 KOG1859 Leucine-rich repeat pr 64.4 1.2 2.7E-05 38.9 -1.5 35 89-129 183-217 (1096)
60 KOG0531 Protein phosphatase 1, 57.8 5.8 0.00013 31.6 1.3 34 89-128 114-147 (414)
61 KOG2120 SCF ubiquitin ligase, 56.4 1.7 3.7E-05 34.2 -1.8 37 89-129 206-242 (419)
62 KOG3207 Beta-tubulin folding c 56.0 2.4 5.2E-05 34.8 -1.1 34 92-128 245-278 (505)
63 KOG2982 Uncharacterized conser 53.3 11 0.00025 29.8 2.2 28 49-76 85-113 (418)
64 KOG1644 U2-associated snRNP A' 50.9 18 0.00039 26.9 2.8 39 89-128 109-147 (233)
65 KOG0473 Leucine-rich repeat pr 47.4 1.3 2.9E-05 33.7 -3.6 65 59-128 41-118 (326)
66 smart00367 LRR_CC Leucine-rich 42.6 18 0.00039 16.9 1.2 13 92-104 1-13 (26)
67 KOG0532 Leucine-rich repeat (L 40.4 21 0.00045 30.7 2.0 36 62-107 213-248 (722)
68 KOG3665 ZYG-1-like serine/thre 35.3 14 0.0003 32.1 0.2 14 116-129 215-228 (699)
69 KOG3864 Uncharacterized conser 27.5 12 0.00027 27.6 -1.1 34 92-128 150-183 (221)
70 KOG2123 Uncharacterized conser 27.2 5.9 0.00013 31.0 -2.9 55 60-128 41-95 (388)
71 smart00446 LRRcap occurring C- 22.5 29 0.00063 16.9 0.0 12 117-128 9-20 (26)
72 KOG3763 mRNA export factor TAP 21.0 56 0.0012 27.7 1.4 37 59-103 217-254 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=6.3e-14 Score=120.50 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEeCCCCCcEEEEeccCCCccccccCCCcceecCc
Q 048677 8 LETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMS 87 (129)
Q Consensus 8 ~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~~w~Gv~C~~~~~~v~~l~L~~~~l~G~i~~~~l~~l~ls 87 (129)
.+.|+++|++||+.+.++ .+.+.+|.. ..+|| .|.||+|+. .++|+.|+|+++++.|.++..
T Consensus 27 ~~~~~~~l~~~~~~~~~~---~~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~-------- 88 (968)
T PLN00113 27 HAEELELLLSFKSSINDP---LKYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSA-------- 88 (968)
T ss_pred CHHHHHHHHHHHHhCCCC---cccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccCChH--------
Confidence 568899999999999654 456789964 46899 999999985 579999999999999988765
Q ss_pred cccCCCCCcEEEccCcccccccC
Q 048677 88 LFHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 88 ~~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
+..+++|++|+|++|+++|.+|
T Consensus 89 -~~~l~~L~~L~Ls~n~~~~~ip 110 (968)
T PLN00113 89 -IFRLPYIQTINLSNNQLSGPIP 110 (968)
T ss_pred -HhCCCCCCEEECCCCccCCcCC
Confidence 3334444444444444444444
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=8.5e-12 Score=103.90 Aligned_cols=108 Identities=30% Similarity=0.415 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCC----CCCceEeCCC--C--CcEEEEeccCCCcccccc
Q 048677 6 GCLETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCD----DWEGVKCNAT--T--RRVMQLSLNNTKRLNHYY 77 (129)
Q Consensus 6 ~~~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~----~w~Gv~C~~~--~--~~v~~l~L~~~~l~G~i~ 77 (129)
.+.+.|.+||+.+|..+..+. ..+|.. ++|. .|.||.|... . .+|+.|+|+++++.|.+|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~-----~~~W~g-------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip 435 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL-----RFGWNG-------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc-----cCCCCC-------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence 466789999999999985431 237953 2331 5999999531 1 258999999999999888
Q ss_pred CC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 78 GT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 78 ~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.. .|..++++ .++.+++|+.|+|++|+|+|.+| ..++++++|++|+|+
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQLTSLRILNLN 498 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhcCCCCCEEECc
Confidence 65 45555553 26678899999999999999999 899999999999884
No 3
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.01 E-value=6.3e-10 Score=61.74 Aligned_cols=42 Identities=36% Similarity=0.722 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEeC
Q 048677 9 ETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKCN 56 (129)
Q Consensus 9 ~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~~w~Gv~C~ 56 (129)
++|++||++||+.+..++ ...+.+|+.. ...+|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~--~~~l~~W~~~---~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDP--SGVLSSWNPS---SDSDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---CCCTT--TT-----S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhccccc--CcccccCCCc---CCCCCe-eeccEEeC
Confidence 679999999999998653 5789999863 027899 99999995
No 4
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=2.7e-07 Score=77.14 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=49.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCC-CCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSL-KQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l-~~L 123 (129)
.+++.|+|++|.+.|.+|.. .|..++++ .++++++|+.|+|++|+|+|.+| ..++.+ .++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP----~~l~~~~~~~ 517 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP----AALGGRLLHR 517 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC----hHHhhccccC
Confidence 46788889999998888764 45556654 26789999999999999999999 887653 345
Q ss_pred cEeeC
Q 048677 124 KILDL 128 (129)
Q Consensus 124 ~~L~L 128 (129)
..+++
T Consensus 518 ~~l~~ 522 (623)
T PLN03150 518 ASFNF 522 (623)
T ss_pred ceEEe
Confidence 55543
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.7e-06 Score=50.88 Aligned_cols=56 Identities=34% Similarity=0.450 Sum_probs=45.0
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+++.|+++++.+..--+.. |..+++|++|++++|.++.--| ..+..+++|++|+++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~---------f~~l~~L~~L~l~~N~l~~i~~----~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS---------FSNLPNLETLDLSNNNLTSIPP----DAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETSSTESEECTTT---------TTTGTTESEEEETSSSESEEET----TTTTTSTTESEEEET
T ss_pred cCcEEECCCCCCCccCHHH---------HcCCCCCCEeEccCCccCccCH----HHHcCCCCCCEEeCc
Confidence 4778999999886432233 7889999999999999985545 678999999999975
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.1e-05 Score=44.74 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=18.3
Q ss_pred EEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccc
Q 048677 62 VMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFT 106 (129)
Q Consensus 62 v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~ls 106 (129)
++.|+++++++. .+|+. +.+|++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~---------l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPE---------LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGH---------GTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCch---------HhCCCCCCEEEecCCCCC
Confidence 445555665554 23443 555666666666666555
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.85 E-value=1.3e-05 Score=69.40 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=18.0
Q ss_pred cCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++|+.|+|++|+++|.+| ..+..++.|++|++
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~l~l 578 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIP----KNLGNVESLVQVNI 578 (968)
T ss_pred hCcccCCEEECCCCcccccCC----hhHhcCcccCEEec
Confidence 334455555555555555555 45555555555554
No 8
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.35 E-value=0.0001 Score=34.81 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=18.4
Q ss_pred CCcEEEccCcccccccCCCCccccCCC
Q 048677 94 ELQRLDLLGNWFTGIYENRAYDSFGSL 120 (129)
Q Consensus 94 ~L~~L~Ls~N~lsG~iP~~~~~~l~~l 120 (129)
+|++|||++|+|+ .|| +++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip----~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIP----SSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEG----TTTTT-
T ss_pred CccEEECCCCcCE-eCC----hhhcCC
Confidence 5899999999999 999 777654
No 9
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.17 E-value=0.00029 Score=39.02 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++|++|++++|+++ .|| +.+++|++|++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~----~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLP----PELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSSS-S-SHG----GHGTTCTTSSEEEET
T ss_pred CcceEEEccCCCCc-ccC----chHhCCCCCCEEEec
Confidence 47999999999999 799 889999999999975
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.32 E-value=0.0025 Score=37.12 Aligned_cols=33 Identities=42% Similarity=0.545 Sum_probs=27.8
Q ss_pred CCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++|++|++++|+++ .||. ..+..+++|++|+++
T Consensus 1 p~L~~L~l~~n~l~-~i~~---~~f~~l~~L~~L~l~ 33 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPP---DSFSNLPNLETLDLS 33 (61)
T ss_dssp TTESEEEETSSTES-EECT---TTTTTGTTESEEEET
T ss_pred CcCcEEECCCCCCC-ccCH---HHHcCCCCCCEeEcc
Confidence 57999999999999 6661 567899999999975
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.15 E-value=0.00082 Score=48.64 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=43.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
..+|.+.|+.|.+.-. |+. .|.++++. .+.+++.|+.|+++-|++. .+| ..+|+++.|++
T Consensus 33 s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lp----rgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILP----RGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCc----cccCCCchhhh
Confidence 4678888888887543 333 33444442 2567778888888888776 557 78888888888
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|||+
T Consensus 107 ldlt 110 (264)
T KOG0617|consen 107 LDLT 110 (264)
T ss_pred hhcc
Confidence 8763
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.68 E-value=0.0066 Score=48.96 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.6
Q ss_pred cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 88 LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 88 ~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.+..+.+|.+|||.+|.+. .|| +.+|+|++|+.|+|.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IP----p~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIP----PILGNMTNLRHLELD 536 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCC----hhhccccceeEEEec
Confidence 3667889999999999988 789 999999999999874
No 13
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.41 E-value=0.011 Score=26.08 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=10.4
Q ss_pred CCCcEEEccCcccccccC
Q 048677 93 EELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP 110 (129)
++|+.|+|++|+|+ ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 47999999999976 444
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.33 E-value=0.012 Score=41.98 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=13.9
Q ss_pred CCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 91 PFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 91 ~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
.+++|+.|++++|++.. +-.. ..+..+++|++|+|
T Consensus 86 ~lp~L~~L~L~~N~I~~-l~~l--~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISD-LNEL--EPLSSLPKLRVLSL 120 (175)
T ss_dssp H-TT--EEE-TTS---S-CCCC--GGGGG-TT--EEE-
T ss_pred hCCcCCEEECcCCcCCC-hHHh--HHHHcCCCcceeec
Confidence 46777777777777753 1100 34566777777765
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.11 E-value=0.03 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=20.5
Q ss_pred cCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++|+.|+|++|..-..+| .+++++++|+.|++
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp----~si~~L~~L~~L~L 688 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELP----SSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcccEEEecCCCCccccc----hhhhccCCCCEEeC
Confidence 345566666666655555566 55666666666554
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.77 E-value=0.0054 Score=52.13 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=45.6
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++-|+|+.|.|.- +|.. .+.++||+ .+.+|+.|-+||||+|++. .+| +.+..+..|+
T Consensus 103 ~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP----PQ~RRL~~Lq 176 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP----PQIRRLSMLQ 176 (1255)
T ss_pred ccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC----HHHHHHhhhh
Confidence 456778888888743 2322 44556664 2456778888999999987 677 8888888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
.|+|+
T Consensus 177 tL~Ls 181 (1255)
T KOG0444|consen 177 TLKLS 181 (1255)
T ss_pred hhhcC
Confidence 88775
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.73 E-value=0.041 Score=49.46 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.|+|+++...+.+|.. ++++++|+.|++++|..-+.+| ..+ .+++|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~s---------i~~L~~L~~L~Ls~C~~L~~LP----~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSS---------IQNLHKLEHLEIENCINLETLP----TGI-NLESLESLDLS 833 (1153)
T ss_pred cchheeCCCCCCccccChh---------hhCCCCCCEEECCCCCCcCeeC----CCC-CccccCEEECC
Confidence 3555666666555555554 6677778888887776566777 544 56666666653
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.68 E-value=0.023 Score=49.77 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=26.5
Q ss_pred ccCCCCCcEEEccCccccc-ccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTG-IYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG-~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+.+++.|+++|+|.|+++- .+| ....-++|++|||+
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~-----~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLP-----EALPSPNLKYLDLS 484 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhh-----hhCCCcccceeecc
Confidence 5678899999999999874 344 22223889999985
No 19
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.64 E-value=0.0059 Score=42.66 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 59 TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++.++|++|.+... |.. +-..++.+++|+|++|.++ .+| .+++.++.|+.|++
T Consensus 52 ~~el~~i~ls~N~fk~f-p~k--------ft~kf~t~t~lNl~~neis-dvP----eE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKF-PKK--------FTIKFPTATTLNLANNEIS-DVP----EELAAMPALRSLNL 107 (177)
T ss_pred CceEEEEecccchhhhC-CHH--------Hhhccchhhhhhcchhhhh-hch----HHHhhhHHhhhccc
Confidence 45788899999988432 222 0122345556666666655 555 55666665555554
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.42 E-value=0.023 Score=49.20 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=19.8
Q ss_pred CCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 94 ELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 94 ~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|+.|++++|+++ .|| ..++++++|++|+|+
T Consensus 423 ~L~~L~Ls~NqLt-~LP----~sl~~L~~L~~LdLs 453 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLP----ESLIHLSSETTVNLE 453 (788)
T ss_pred hhhhhhhccCccc-ccC----hHHhhccCCCeEECC
Confidence 4556666666665 566 666667777776663
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.12 E-value=0.042 Score=39.22 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=20.4
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCcccc-CCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSF-GSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l-~~l~~L~~L~Ls 129 (129)
++..++|++|.+.. + ..+..+++|+.|++++|.++ .|+ ..+ ..+++|+.|+|+
T Consensus 43 ~L~~L~Ls~N~I~~-l----------~~l~~L~~L~~L~L~~N~I~-~i~----~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 43 KLEVLDLSNNQITK-L----------EGLPGLPRLKTLDLSNNRIS-SIS----EGLDKNLPNLQELYLS 96 (175)
T ss_dssp T--EEE-TTS--S-------------TT----TT--EEE--SS----S-C----HHHHHH-TT--EEE-T
T ss_pred CCCEEECCCCCCcc-c----------cCccChhhhhhcccCCCCCC-ccc----cchHHhCCcCCEEECc
Confidence 45666676666632 1 12667899999999999998 455 444 358899999874
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.94 E-value=0.012 Score=42.69 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=28.8
Q ss_pred cccCCCCCcEEEccCccccc-ccCCCCccccCCCCCCcEeeC
Q 048677 88 LFHPFEELQRLDLLGNWFTG-IYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 88 ~~~~l~~L~~L~Ls~N~lsG-~iP~~~~~~l~~l~~L~~L~L 128 (129)
.||.++.|+.|||.+|+++- .+| ..+..+..|+.|+|
T Consensus 97 gfgs~p~levldltynnl~e~~lp----gnff~m~tlralyl 134 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLP----GNFFYMTTLRALYL 134 (264)
T ss_pred ccCCCchhhhhhccccccccccCC----cchhHHHHHHHHHh
Confidence 48999999999999999874 467 67766766665554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.92 E-value=0.031 Score=42.08 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
++|+.|++++|.+++.-...-...+..+++|++|++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 355566666555543211000023344555555554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.83 E-value=0.044 Score=44.12 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=37.1
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
...++|+|..|.++-.-++. |..+++|+.||||+|+++--=| ..+..+++|
T Consensus 67 ~~tveirLdqN~I~~iP~~a---------F~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l 117 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA---------FKTLHRLRRLDLSKNNISFIAP----DAFKGLASL 117 (498)
T ss_pred CcceEEEeccCCcccCChhh---------ccchhhhceecccccchhhcCh----HhhhhhHhh
Confidence 34688999999886544444 8889999999999999884445 555444444
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.70 E-value=0.03 Score=45.28 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=37.7
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
.++.-++|..|.+.. +|.+ +..+++|.+||+|+|.++ .+| .++|++ +|++|.+
T Consensus 252 ~~l~vLDLRdNklke-~Pde---------~clLrsL~rLDlSNN~is-~Lp----~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKE-VPDE---------ICLLRSLERLDLSNNDIS-SLP----YSLGNL-HLKFLAL 304 (565)
T ss_pred ccceeeecccccccc-CchH---------HHHhhhhhhhcccCCccc-cCC----cccccc-eeeehhh
Confidence 345555666665532 2333 667889999999999999 467 799999 7887754
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.64 E-value=0.027 Score=49.45 Aligned_cols=36 Identities=39% Similarity=0.503 Sum_probs=18.1
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..++.|++|||++|.=-+.+| .+|+.|-+|+||+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP----~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLP----SSIGELVHLRYLDL 602 (889)
T ss_pred HhhCcceEEEECCCCCccCcCC----hHHhhhhhhhcccc
Confidence 3344555555555544444555 55555555555544
No 27
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.55 E-value=0.063 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCCCcEEEccCcccccccC
Q 048677 92 FEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP 110 (129)
+++|++|+|++|+++ .||
T Consensus 1 L~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCCEEECCCCcCC-cCC
Confidence 468999999999998 667
No 28
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.55 E-value=0.063 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCCCcEEEccCcccccccC
Q 048677 92 FEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP 110 (129)
+++|++|+|++|+++ .||
T Consensus 1 L~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCCEEECCCCcCC-cCC
Confidence 468999999999998 667
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.18 E-value=0.034 Score=41.84 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=41.2
Q ss_pred CcEEEEeccCCCccccccCC-----C---cceecCc--------------cccCC-CCCcEEEccCcccccccCCCCccc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----S---ASLLNMS--------------LFHPF-EELQRLDLLGNWFTGIYENRAYDS 116 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~---l~~l~ls--------------~~~~l-~~L~~L~Ls~N~lsG~iP~~~~~~ 116 (129)
..++.++++++.+.+..+.. . |..++++ .+..+ ++|+.|++++|.+++..+......
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 46788888887775432221 1 4444442 12344 788888888888885432000034
Q ss_pred cCCCCCCcEeeCC
Q 048677 117 FGSLKQLKILDLG 129 (129)
Q Consensus 117 l~~l~~L~~L~Ls 129 (129)
+..+++|++|+++
T Consensus 161 ~~~~~~L~~L~l~ 173 (319)
T cd00116 161 LRANRDLKELNLA 173 (319)
T ss_pred HHhCCCcCEEECc
Confidence 5567788888764
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=92.65 E-value=0.062 Score=45.43 Aligned_cols=33 Identities=39% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|+.|+.|+||+|.+.---+ ..+.-.++|++|+|
T Consensus 292 Lt~L~~L~lS~NaI~rih~----d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHI----DSWSFTQKLKELDL 324 (873)
T ss_pred cchhhhhccchhhhheeec----chhhhcccceeEec
Confidence 4445555555554443333 34444444444444
No 31
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.25 E-value=0.024 Score=26.85 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=13.0
Q ss_pred CCCCcEEEccCcccccccC
Q 048677 92 FEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP 110 (129)
+++|+.|+|++|.++..-.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 3679999999999886654
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.06 E-value=0.062 Score=47.21 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=37.9
Q ss_pred CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 80 SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 80 ~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.|.++|++ .++.|-+||+|+|+...++ .+| ..+++|+.|.+||+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP----~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLP----SGLGNLKKLIYLNLE 626 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccc----hHHHHHHhhheeccc
Confidence 45666665 2677889999999999998 899 999999999999873
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.83 E-value=0.12 Score=43.79 Aligned_cols=36 Identities=36% Similarity=0.486 Sum_probs=28.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..+.+|.+|.|+.|+++ .+|. ..+.+|++|+.|||
T Consensus 193 F~~lnsL~tlkLsrNrit-tLp~---r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRIT-TLPQ---RSFKRLPKLESLDL 228 (873)
T ss_pred ccccchheeeecccCccc-ccCH---HHhhhcchhhhhhc
Confidence 667788999999999998 5661 45666999998887
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.72 E-value=0.078 Score=46.63 Aligned_cols=62 Identities=29% Similarity=0.339 Sum_probs=41.1
Q ss_pred EEEEeccCCCccccccCC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 62 VMQLSLNNTKRLNHYYGT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 62 v~~l~L~~~~l~G~i~~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
+..|++++|.+.. +|-. .|..++++ .+.++.+|++|.|.+|.+. ..| .++..+.+|++||
T Consensus 47 L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP----~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLP----ASISELKNLQYLD 120 (1081)
T ss_pred eEEeecccccccc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCc----hhHHhhhcccccc
Confidence 6788888887632 2222 34444443 2456777888888888776 567 7777888888887
Q ss_pred CC
Q 048677 128 LG 129 (129)
Q Consensus 128 Ls 129 (129)
+|
T Consensus 121 lS 122 (1081)
T KOG0618|consen 121 LS 122 (1081)
T ss_pred cc
Confidence 75
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=91.61 E-value=0.044 Score=47.49 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=32.0
Q ss_pred cEEEEeccCCCccccccCC--CcceecCc---------cccCCCCCcEEEccCcccccccC
Q 048677 61 RVMQLSLNNTKRLNHYYGT--SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~--~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
.+..|++++|.+.. +|.. .|..++++ .+..+++|+.|+|++|.|+|.+|
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 45566666666654 3322 22222222 25678899999999999999988
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.08 E-value=0.3 Score=42.32 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=34.2
Q ss_pred cEEEEeccCCCccccccCC---CcceecCcc--ccC-----CCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGT---SASLLNMSL--FHP-----FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~---~l~~l~ls~--~~~-----l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.+..|++++|.|.. +|.. .|..++++. +.. .++|+.|++++|+++ .|| ..+. ++|++|+|+
T Consensus 221 nL~~L~Ls~N~Lts-LP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP----~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTS-IPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-CLP----ENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCcccc-CChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-ccc----cccC--CCCcEEECC
Confidence 46777888777763 3432 333343331 111 136777777777777 467 5443 356666653
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=90.37 E-value=0.37 Score=41.79 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=16.1
Q ss_pred CCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
++|+.|++++|+|+ .|| ..+. ++|++|+|
T Consensus 346 ~sL~~L~Ls~N~L~-~LP----~~lp--~~L~~LdL 374 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLP----ETLP--PTITTLDV 374 (754)
T ss_pred CcccEEECCCCCCC-cCC----hhhc--CCcCEEEC
Confidence 36666666666665 355 4332 35555555
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=89.84 E-value=0.11 Score=44.52 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=34.1
Q ss_pred EEEEeccCCCcc-ccccCC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccc-cCCCCCCcE
Q 048677 62 VMQLSLNNTKRL-NHYYGT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDS-FGSLKQLKI 125 (129)
Q Consensus 62 v~~l~L~~~~l~-G~i~~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~-l~~l~~L~~ 125 (129)
+.++.+..|+|. ..||.+ .|..++|+ .+-.-+++-+|+||+|++. +|| .+ +.++.-|-+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIP----n~lfinLtDLLf 154 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIP----NSLFINLTDLLF 154 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCC----chHHHhhHhHhh
Confidence 444555556653 235655 34455554 1222345666666666665 566 33 346666666
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
||||
T Consensus 155 LDLS 158 (1255)
T KOG0444|consen 155 LDLS 158 (1255)
T ss_pred hccc
Confidence 6664
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=89.67 E-value=0.14 Score=40.27 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=12.0
Q ss_pred ccCCCCCcEEEccCcccc
Q 048677 89 FHPFEELQRLDLLGNWFT 106 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~ls 106 (129)
+..+++|+.||||+|.++
T Consensus 325 La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhcccceEeecccchhH
Confidence 445667777777777665
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.51 E-value=0.23 Score=37.58 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.5
Q ss_pred CCCcEEEccCcccc
Q 048677 93 EELQRLDLLGNWFT 106 (129)
Q Consensus 93 ~~L~~L~Ls~N~ls 106 (129)
++|++|+|+.|++.
T Consensus 91 P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIK 104 (260)
T ss_pred CceeEEeecCCccc
Confidence 55555555555443
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=88.94 E-value=0.33 Score=39.31 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=47.1
Q ss_pred CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 59 TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
-.++..|+|++|.+.+.=++. ++..+-|. .|..+..|++|+|..|+++---| ..+-.+..|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~----~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP----GAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec----cccccccee
Confidence 467889999999987543322 22222221 36678999999999999998778 777777777
Q ss_pred cEeeC
Q 048677 124 KILDL 128 (129)
Q Consensus 124 ~~L~L 128 (129)
..|+|
T Consensus 349 ~~l~l 353 (498)
T KOG4237|consen 349 STLNL 353 (498)
T ss_pred eeeeh
Confidence 77765
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=0.21 Score=39.21 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=17.6
Q ss_pred ccCCCCCcEEEccCcccccccC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
+-++|.|++|+|+.|.++..|-
T Consensus 93 le~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred HhcCccceEeeccCCcCCCccc
Confidence 5578889999999998886664
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.24 E-value=0.31 Score=37.85 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=28.8
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|+..+||.|.|.-..|.....-|++-+.|+.|.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l 127 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKL 127 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEe
Confidence 4578999999999999999888211112456677777765
No 44
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.39 E-value=0.47 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCCcEEEccCcccc
Q 048677 93 EELQRLDLLGNWFT 106 (129)
Q Consensus 93 ~~L~~L~Ls~N~ls 106 (129)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999885
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=86.40 E-value=0.27 Score=38.54 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=18.0
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|+.|++++|+++ .+| ...+.++.|+.|++
T Consensus 159 ~~~l~~L~~L~l~~N~l~-~l~----~~~~~~~~L~~L~l 193 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLS-DLP----KLLSNLSNLNNLDL 193 (394)
T ss_pred hhccccccccccCCchhh-hhh----hhhhhhhhhhheec
Confidence 344556666666666555 444 33334455554444
No 46
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.82 E-value=0.69 Score=22.57 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred CCCCcEEEccCcccc
Q 048677 92 FEELQRLDLLGNWFT 106 (129)
Q Consensus 92 l~~L~~L~Ls~N~ls 106 (129)
+++|+.|+|+.|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 468999999999875
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.39 E-value=1.1 Score=35.09 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=28.4
Q ss_pred cCCC-CCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 90 HPFE-ELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 90 ~~l~-~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
..+. +|+.|++++|.+. .+| ..++.++.|+.|+++
T Consensus 136 ~~~~~nL~~L~l~~N~i~-~l~----~~~~~l~~L~~L~l~ 171 (394)
T COG4886 136 GLLKSNLKELDLSDNKIE-SLP----SPLRNLPNLKNLDLS 171 (394)
T ss_pred ccchhhcccccccccchh-hhh----hhhhccccccccccC
Confidence 3443 8999999999988 666 678899999999874
No 48
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.76 E-value=1.1 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.9
Q ss_pred CCCcEEEccCcccccccC
Q 048677 93 EELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP 110 (129)
++|+.|+.++|+|+ ++|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 36899999999988 566
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=80.47 E-value=1.2 Score=35.19 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=20.4
Q ss_pred CCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++.++.|++|+|.+. .| .++..+++|+.||||
T Consensus 306 ~Pkir~L~lS~N~i~-~v-----~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TV-----QNLAELPQLQLLDLS 337 (490)
T ss_pred ccceeEEecccccee-ee-----hhhhhcccceEeecc
Confidence 466777777777665 23 246666777777764
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.37 E-value=0.72 Score=39.70 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=21.6
Q ss_pred ccCCCCCcEEEccCccccc-c-cCCCCc-cccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTG-I-YENRAY-DSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG-~-iP~~~~-~~l~~l~~L~~L~Ls 129 (129)
+-+|++|++||+|...... . |... + ..-..||.|++||.|
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~q-Ylec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQ-YLECGMVLPELRFLDCS 258 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHH-HHHhcccCccccEEecC
Confidence 4467788888888664332 1 2200 0 011237778887764
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.53 E-value=0.98 Score=34.27 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=25.6
Q ss_pred ccCCCCCcEEEccCc--ccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGN--WFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N--~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..|++|+.|++|.| +.++.++ .-.-.+++|++|+|+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~----vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLE----VLAEKAPNLKVLNLS 99 (260)
T ss_pred CCCcchhhhhcccCCcccccccce----ehhhhCCceeEEeec
Confidence 455678888888888 5666666 555556777777764
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.60 E-value=1.3 Score=35.28 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=9.2
Q ss_pred CcEEEEeccCCCccc
Q 048677 60 RRVMQLSLNNTKRLN 74 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G 74 (129)
..+..+++..|.+..
T Consensus 95 ~~l~~l~l~~n~i~~ 109 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK 109 (414)
T ss_pred cceeeeeccccchhh
Confidence 345666777776643
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=75.30 E-value=0.94 Score=35.97 Aligned_cols=34 Identities=32% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCCCCcEEEccCcccccccCCCCccc----cCCCCCCcEeeC
Q 048677 91 PFEELQRLDLLGNWFTGIYENRAYDS----FGSLKQLKILDL 128 (129)
Q Consensus 91 ~l~~L~~L~Ls~N~lsG~iP~~~~~~----l~~l~~L~~L~L 128 (129)
..+.|++||||.|.|.-.-+ +. |.++..|+.|.|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~----~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGI----RGLEELLSSCTDLEELYL 127 (382)
T ss_pred cCCceeEeeccccccCccch----HHHHHHHHhccCHHHHhh
Confidence 45699999999999986554 33 345677776654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=74.27 E-value=0.74 Score=40.20 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=14.0
Q ss_pred ccCCCCCcEEEccCcccccccC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
+..+++|++|||++|.+. .+|
T Consensus 205 Lr~l~~LkhLDlsyN~L~-~vp 225 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLR-HVP 225 (1096)
T ss_pred HHhcccccccccccchhc-ccc
Confidence 455677777777777775 344
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=73.74 E-value=1.7 Score=36.89 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.3
Q ss_pred CCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 94 ELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 94 ~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
.|..||+|.|+++ .|| .++.+|+.|++|-|
T Consensus 212 pLi~lDfScNkis-~iP----v~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLP----VDFRKMRHLQVLQL 241 (722)
T ss_pred ceeeeecccCcee-ecc----hhhhhhhhheeeee
Confidence 5788999999988 889 99999999999865
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=69.92 E-value=0.22 Score=34.89 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=35.9
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
.+|.++|+.|.++- +|.+ +..++.|+.|++++|.|.- .| .-+..|.+|-+||
T Consensus 78 t~t~lNl~~neisd-vPeE---------~Aam~aLr~lNl~~N~l~~-~p----~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 78 TATTLNLANNEISD-VPEE---------LAAMPALRSLNLRFNPLNA-EP----RVIAPLIKLDMLD 129 (177)
T ss_pred hhhhhhcchhhhhh-chHH---------HhhhHHhhhcccccCcccc-ch----HHHHHHHhHHHhc
Confidence 46778888888743 4555 7778889999999988874 34 4455565555554
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=66.38 E-value=2.8 Score=34.41 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=25.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCcccc-CCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSF-GSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l-~~l~~L~~L~L 128 (129)
..+|++|+.|+|+.|.|.-.+- ... ..+++|+.|.|
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~----s~~~~~l~~lK~L~l 204 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFIS----SNTTLLLSHLKQLVL 204 (505)
T ss_pred HHhcccchhcccccccccCCcc----ccchhhhhhhheEEe
Confidence 4578999999999998876655 322 35666777665
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=65.92 E-value=7.1 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=16.6
Q ss_pred CCCCcEEEccCcccc--cccCCCCccccCCCCCCcEeeC
Q 048677 92 FEELQRLDLLGNWFT--GIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 92 l~~L~~L~Ls~N~ls--G~iP~~~~~~l~~l~~L~~L~L 128 (129)
+++|+.|.|.+|++. |.+- -+..+++|++|.+
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~-----pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLD-----PLASCPKLEYLTL 120 (233)
T ss_pred ccccceEEecCcchhhhhhcc-----hhccCCccceeee
Confidence 345566666665543 2221 3455666666643
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=64.40 E-value=1.2 Score=38.90 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=28.4
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+.-++.|+.|||++|+|+-- ..|..|++|+.|||+
T Consensus 183 Lqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDls 217 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLS 217 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh------HHHHhcccccccccc
Confidence 33467899999999999832 467889999999985
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=57.81 E-value=5.8 Score=31.62 Aligned_cols=34 Identities=35% Similarity=0.358 Sum_probs=22.4
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|++++|+++.-.+ +..++.|+.|++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l 147 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNL 147 (414)
T ss_pred hhhhhcchheeccccccccccc------hhhccchhhhee
Confidence 4557788888888888774433 445555666655
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=56.36 E-value=1.7 Score=34.23 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.0
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+.++.+|+.|.|.+++++-.|- ..|++-..|+.|||+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~----~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIV----NTIAKNSNLVRLNLS 242 (419)
T ss_pred HHHHHhhhhccccccccCcHHH----HHHhccccceeeccc
Confidence 5678899999999999999888 888888888888875
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=2.4 Score=34.79 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=17.7
Q ss_pred CCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..|+.|||++|++--.=-. .-++.++.|+.|++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNL 278 (505)
T ss_pred hhHHhhccccCCcccccccc---cccccccchhhhhc
Confidence 34566777776665421100 23455666666554
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.34 E-value=11 Score=29.77 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCCceEeCC-CCCcEEEEeccCCCccccc
Q 048677 49 DWEGVKCNA-TTRRVMQLSLNNTKRLNHY 76 (129)
Q Consensus 49 ~w~Gv~C~~-~~~~v~~l~L~~~~l~G~i 76 (129)
.|.-|.|-- ...+++.++|+.|.|+..|
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCcc
Confidence 466555421 2467888999998887544
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=50.90 E-value=18 Score=26.92 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=21.8
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..++.|++|.+-.|..+-. +.+-.--+..+++|++||+
T Consensus 109 La~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred hccCCccceeeecCCchhcc-cCceeEEEEecCcceEeeh
Confidence 45567777777777765421 1110012456777777775
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=47.42 E-value=1.3 Score=33.72 Aligned_cols=65 Identities=17% Similarity=-0.008 Sum_probs=40.2
Q ss_pred CCcEEEEeccCCCccccccCC----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 59 TRRVMQLSLNNTKRLNHYYGT----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
..+|+.|+++.+.+.-.=... .+..++++ .++++..++.+++..|..+ ..| .+.+..+++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p----~s~~k~~~~k~ 115 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQP----KSQKKEPHPKK 115 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCC----ccccccCCcch
Confidence 468999999988774210000 22333443 2455666777777767665 567 77888888877
Q ss_pred eeC
Q 048677 126 LDL 128 (129)
Q Consensus 126 L~L 128 (129)
+++
T Consensus 116 ~e~ 118 (326)
T KOG0473|consen 116 NEQ 118 (326)
T ss_pred hhh
Confidence 654
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.60 E-value=18 Score=16.93 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=9.7
Q ss_pred CCCCcEEEccCcc
Q 048677 92 FEELQRLDLLGNW 104 (129)
Q Consensus 92 l~~L~~L~Ls~N~ 104 (129)
+++|+.|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888764
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.44 E-value=21 Score=30.66 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=25.6
Q ss_pred EEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCccccc
Q 048677 62 VMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTG 107 (129)
Q Consensus 62 v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG 107 (129)
++.+|++.|++. .||-. |..++.|++|-|.+|.|..
T Consensus 213 Li~lDfScNkis-~iPv~---------fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVD---------FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCcee-ecchh---------hhhhhhheeeeeccCCCCC
Confidence 455666666552 23333 7889999999999999984
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=35.35 E-value=14 Score=32.07 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.0
Q ss_pred ccCCCCCCcEeeCC
Q 048677 116 SFGSLKQLKILDLG 129 (129)
Q Consensus 116 ~l~~l~~L~~L~Ls 129 (129)
.+.+|++|++||+|
T Consensus 215 ~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 215 DLFNLKKLRVLDIS 228 (699)
T ss_pred HHhcccCCCeeecc
Confidence 56778888888876
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=12 Score=27.63 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
.++|+.|+|+.|. .|...|...+..+++|+.|.|
T Consensus 150 ~~~L~~L~lsgC~---rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 150 APSLQDLDLSGCP---RITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred ccchheeeccCCC---eechhHHHHHHHhhhhHHHHh
Confidence 5789999999774 222222256667777776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.16 E-value=5.9 Score=31.05 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=29.6
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+.-|.|+-|.++. |+.+..+++|+.|+|-.|.+. .|-. ..-+-++++|+.|.|
T Consensus 41 p~lEVLsLSvNkIss-----------L~pl~rCtrLkElYLRkN~I~-sldE--L~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISS-----------LAPLQRCTRLKELYLRKNCIE-SLDE--LEYLKNLPSLRTLWL 95 (388)
T ss_pred ccceeEEeecccccc-----------chhHHHHHHHHHHHHHhcccc-cHHH--HHHHhcCchhhhHhh
Confidence 345556666666532 111556778888888887654 1210 012345666665544
No 71
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.49 E-value=29 Score=16.87 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=6.7
Q ss_pred cCCCCCCcEeeC
Q 048677 117 FGSLKQLKILDL 128 (129)
Q Consensus 117 l~~l~~L~~L~L 128 (129)
+..+++|+.||.
T Consensus 9 i~~LPqL~~LD~ 20 (26)
T smart00446 9 IRLLPQLRKLDX 20 (26)
T ss_pred HHHCCccceecc
Confidence 345566666653
No 72
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.00 E-value=56 Score=27.74 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCcEEEEeccCCCccccccCCCcceecCccc-cCCCCCcEEEccCc
Q 048677 59 TRRVMQLSLNNTKRLNHYYGTSASLLNMSLF-HPFEELQRLDLLGN 103 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~-~~l~~L~~L~Ls~N 103 (129)
...|.+++|++|+|.-. + .++.+ ...++|.+|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~L---d-----~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHL---D-----ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhch---h-----hhhHHHHhcchhheeecccc
Confidence 46688899999987310 0 01111 23578889999988
Done!