Query 048677
Match_columns 129
No_of_seqs 197 out of 1513
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 20:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 8.2E-18 2.8E-22 140.1 8.2 108 6-129 8-134 (768)
2 1ogq_A PGIP-2, polygalacturona 99.7 1.6E-17 5.6E-22 125.3 9.0 110 6-129 2-133 (313)
3 4eco_A Uncharacterized protein 99.6 3E-15 1E-19 122.6 8.4 78 9-104 29-116 (636)
4 4ecn_A Leucine-rich repeat pro 99.5 1.1E-14 3.7E-19 123.7 7.4 83 7-108 266-363 (876)
5 4fcg_A Uncharacterized protein 99.3 2.6E-13 9E-18 102.9 0.1 114 6-129 23-158 (328)
6 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 74.3 6.7 70 46-129 7-88 (347)
7 3e6j_A Variable lymphocyte rec 98.6 7.3E-08 2.5E-12 69.3 6.2 82 43-129 15-120 (229)
8 3rgz_A Protein brassinosteroid 98.6 4.2E-08 1.4E-12 81.7 5.0 66 60-129 632-712 (768)
9 3g39_A Variable lymphocyte rec 98.5 1.4E-07 4.7E-12 65.0 5.7 78 47-129 9-110 (170)
10 2o6r_A Variable lymphocyte rec 98.5 2.5E-07 8.6E-12 63.5 5.7 79 46-129 6-108 (177)
11 2o6s_A Variable lymphocyte rec 98.5 2.8E-07 9.7E-12 64.7 5.9 80 45-129 5-108 (208)
12 2z81_A CD282 antigen, TOLL-lik 98.4 3.6E-07 1.2E-11 72.4 6.2 78 46-129 3-106 (549)
13 2v9t_B SLIT homolog 2 protein 98.4 5.5E-07 1.9E-11 64.3 5.8 79 46-129 10-112 (220)
14 2o6q_A Variable lymphocyte rec 98.4 3.7E-07 1.3E-11 66.7 4.6 35 90-128 82-116 (270)
15 3v47_A TOLL-like receptor 5B a 98.3 6.9E-07 2.4E-11 69.2 6.2 80 45-129 6-111 (455)
16 1w8a_A SLIT protein; signaling 98.3 7.8E-07 2.7E-11 62.2 5.6 66 60-129 54-134 (192)
17 1w8a_A SLIT protein; signaling 98.3 8.6E-07 3E-11 62.0 5.7 79 46-129 7-110 (192)
18 2r9u_A Variable lymphocyte rec 98.3 1.2E-06 4.2E-11 60.5 5.3 66 60-129 33-113 (174)
19 3m19_A Variable lymphocyte rec 98.3 5.6E-07 1.9E-11 65.1 3.6 65 61-129 36-115 (251)
20 2wfh_A SLIT homolog 2 protein 98.2 1.7E-06 5.8E-11 60.7 5.5 76 49-129 11-110 (193)
21 2z80_A TOLL-like receptor 2, v 98.2 2.1E-06 7.1E-11 64.9 6.2 81 43-129 26-132 (353)
22 2je0_A Acidic leucine-rich nuc 98.2 1.1E-06 3.9E-11 58.5 4.1 65 60-129 42-121 (149)
23 1ogq_A PGIP-2, polygalacturona 98.2 6.4E-07 2.2E-11 67.0 3.1 66 60-129 76-157 (313)
24 3g39_A Variable lymphocyte rec 98.2 2.2E-06 7.6E-11 58.9 5.5 51 60-110 54-119 (170)
25 2wfh_A SLIT homolog 2 protein 98.2 3.2E-06 1.1E-10 59.3 5.7 66 60-129 54-134 (193)
26 2v70_A SLIT-2, SLIT homolog 2 98.2 3.3E-06 1.1E-10 60.2 5.8 66 60-129 81-161 (220)
27 4fcg_A Uncharacterized protein 98.1 2.9E-06 9.8E-11 64.0 5.6 36 89-128 273-308 (328)
28 2ell_A Acidic leucine-rich nuc 98.1 1.6E-06 5.6E-11 58.8 3.6 65 60-129 49-128 (168)
29 2v70_A SLIT-2, SLIT homolog 2 98.1 3.4E-06 1.2E-10 60.2 5.4 66 60-129 57-137 (220)
30 2r9u_A Variable lymphocyte rec 98.1 4.6E-06 1.6E-10 57.6 5.7 17 90-106 102-118 (174)
31 2v9t_B SLIT homolog 2 protein 98.1 5.8E-06 2E-10 58.9 6.4 64 61-128 57-135 (220)
32 1xku_A Decorin; proteoglycan, 98.1 4.7E-06 1.6E-10 62.2 6.1 70 46-129 30-108 (330)
33 4ezg_A Putative uncharacterize 98.1 3.8E-06 1.3E-10 58.7 5.0 56 61-129 89-144 (197)
34 2ft3_A Biglycan; proteoglycan, 98.1 4.7E-06 1.6E-10 62.4 5.7 69 47-129 33-110 (332)
35 4eco_A Uncharacterized protein 98.1 3.2E-06 1.1E-10 69.0 5.0 57 60-129 206-281 (636)
36 3oja_A Leucine-rich immune mol 98.0 7.6E-06 2.6E-10 65.0 6.5 66 49-128 110-176 (487)
37 4g8a_A TOLL-like receptor 4; l 98.0 5.9E-06 2E-10 65.9 5.8 66 60-129 494-575 (635)
38 2z66_A Variable lymphocyte rec 98.0 4.6E-06 1.6E-10 61.6 4.8 77 46-129 6-109 (306)
39 2o6r_A Variable lymphocyte rec 98.0 8.7E-06 3E-10 55.7 5.3 66 60-129 52-132 (177)
40 3e6j_A Variable lymphocyte rec 98.0 8.8E-06 3E-10 58.2 5.4 35 89-128 108-142 (229)
41 4g8a_A TOLL-like receptor 4; l 98.0 7.4E-06 2.5E-10 65.3 5.3 66 60-129 52-132 (635)
42 2je0_A Acidic leucine-rich nuc 98.0 2.5E-06 8.6E-11 56.8 2.0 69 60-129 64-148 (149)
43 3j0a_A TOLL-like receptor 5; m 98.0 1E-05 3.4E-10 68.0 6.0 74 49-128 15-104 (844)
44 3zyi_A Leucine-rich repeat-con 97.9 1.5E-05 5.1E-10 62.2 6.3 76 50-129 56-155 (452)
45 2id5_A Lingo-1, leucine rich r 97.9 1.5E-05 5.3E-10 62.2 6.4 77 49-129 12-112 (477)
46 3m19_A Variable lymphocyte rec 97.9 1.7E-05 5.9E-10 57.2 5.7 66 60-129 59-139 (251)
47 4ecn_A Leucine-rich repeat pro 97.9 9E-06 3.1E-10 69.3 4.7 57 60-129 448-523 (876)
48 2o6s_A Variable lymphocyte rec 97.9 2.2E-05 7.4E-10 54.9 5.7 37 89-129 120-156 (208)
49 2xot_A Amphoterin-induced prot 97.9 1.8E-05 6.2E-10 60.2 5.5 78 47-129 18-120 (361)
50 2ifg_A High affinity nerve gro 97.9 1.8E-05 6.3E-10 59.4 5.2 57 59-129 55-111 (347)
51 4b8c_D Glucose-repressible alc 97.8 6.4E-06 2.2E-10 68.6 2.9 64 60-129 224-301 (727)
52 2z7x_B TOLL-like receptor 1, v 97.8 9.1E-06 3.1E-10 64.1 3.6 34 89-129 65-98 (520)
53 1dce_A Protein (RAB geranylger 97.8 1.7E-05 5.7E-10 64.4 5.2 65 60-129 463-541 (567)
54 2ell_A Acidic leucine-rich nuc 97.8 1.1E-05 3.7E-10 54.7 3.4 65 60-129 71-155 (168)
55 4b8c_D Glucose-repressible alc 97.8 1.8E-05 6E-10 66.0 4.9 64 60-129 247-324 (727)
56 3rfs_A Internalin B, repeat mo 97.8 3.2E-05 1.1E-09 56.5 5.7 66 60-129 133-213 (272)
57 3vq2_A TLR4, TOLL-like recepto 97.8 2.5E-05 8.5E-10 62.6 5.6 66 60-129 448-529 (606)
58 3vq2_A TLR4, TOLL-like recepto 97.8 2.6E-05 8.8E-10 62.5 5.6 66 60-129 32-112 (606)
59 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 2.2E-05 7.4E-10 62.8 5.2 56 60-128 52-107 (562)
60 2z81_A CD282 antigen, TOLL-lik 97.8 1.8E-05 6.1E-10 62.6 4.6 66 60-129 50-131 (549)
61 4ezg_A Putative uncharacterize 97.8 2.8E-05 9.7E-10 54.1 5.0 37 89-129 84-120 (197)
62 3v47_A TOLL-like receptor 5B a 97.8 2.5E-05 8.4E-10 60.4 5.1 65 60-128 299-378 (455)
63 3t6q_A CD180 antigen; protein- 97.8 2.6E-05 9E-10 62.5 5.4 66 60-129 33-113 (606)
64 3rfs_A Internalin B, repeat mo 97.8 3.5E-05 1.2E-09 56.2 5.7 37 89-129 129-165 (272)
65 2xot_A Amphoterin-induced prot 97.8 3.6E-05 1.2E-09 58.5 5.5 66 60-129 64-144 (361)
66 1ozn_A Reticulon 4 receptor; N 97.7 4E-05 1.4E-09 56.0 5.5 36 89-128 173-208 (285)
67 1dce_A Protein (RAB geranylger 97.7 2.8E-05 9.7E-10 63.1 5.0 62 61-129 442-516 (567)
68 2z7x_B TOLL-like receptor 1, v 97.7 3.5E-05 1.2E-09 60.7 5.4 66 60-129 324-407 (520)
69 2z62_A TOLL-like receptor 4, v 97.7 4.2E-05 1.4E-09 55.6 5.4 65 61-129 29-108 (276)
70 1ozn_A Reticulon 4 receptor; N 97.7 3.9E-05 1.3E-09 56.1 5.2 66 60-129 32-113 (285)
71 2z66_A Variable lymphocyte rec 97.7 5.2E-05 1.8E-09 55.9 5.8 37 89-129 219-256 (306)
72 1wwl_A Monocyte differentiatio 97.7 2.7E-05 9.3E-10 57.9 4.2 37 89-129 169-209 (312)
73 3t6q_A CD180 antigen; protein- 97.7 3.8E-05 1.3E-09 61.5 5.3 66 60-129 57-137 (606)
74 3zyj_A Leucine-rich repeat-con 97.7 7.4E-05 2.5E-09 58.0 6.6 76 50-129 45-144 (440)
75 2z62_A TOLL-like receptor 4, v 97.7 5.1E-05 1.7E-09 55.2 5.3 66 60-129 52-132 (276)
76 1a9n_A U2A', U2A'; complex (nu 97.7 2.9E-05 9.8E-10 53.1 3.6 34 90-128 85-120 (176)
77 3rw6_A Nuclear RNA export fact 97.7 4.6E-06 1.6E-10 62.1 -0.6 35 91-129 168-204 (267)
78 1ziw_A TOLL-like receptor 3; i 97.7 3E-05 1E-09 63.0 4.2 66 60-129 25-105 (680)
79 1xku_A Decorin; proteoglycan, 97.7 5.9E-05 2E-09 56.2 5.4 65 60-129 192-271 (330)
80 3oja_B Anopheles plasmodium-re 97.7 7.5E-05 2.6E-09 60.3 6.4 17 61-77 76-92 (597)
81 1p9a_G Platelet glycoprotein I 97.6 7.9E-05 2.7E-09 55.2 5.7 36 89-128 144-179 (290)
82 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 7.1E-05 2.4E-09 59.8 5.8 67 59-129 352-436 (562)
83 1a9n_A U2A', U2A'; complex (nu 97.6 4.1E-05 1.4E-09 52.3 3.8 53 61-129 43-96 (176)
84 1wwl_A Monocyte differentiatio 97.6 2.2E-05 7.5E-10 58.4 2.5 33 93-129 149-181 (312)
85 2z63_A TOLL-like receptor 4, v 97.6 6.1E-05 2.1E-09 59.7 5.1 37 89-129 490-526 (570)
86 3zyi_A Leucine-rich repeat-con 97.6 6.1E-05 2.1E-09 58.7 5.0 36 89-128 262-297 (452)
87 3zyj_A Leucine-rich repeat-con 97.6 7.4E-05 2.5E-09 58.0 5.4 65 61-129 208-287 (440)
88 3j0a_A TOLL-like receptor 5; m 97.6 4.7E-05 1.6E-09 63.9 4.5 37 89-128 119-155 (844)
89 3oja_B Anopheles plasmodium-re 97.6 7.4E-05 2.5E-09 60.4 5.4 63 62-129 53-131 (597)
90 3o6n_A APL1; leucine-rich repe 97.6 0.00013 4.5E-09 55.5 6.5 36 89-128 137-172 (390)
91 2z63_A TOLL-like receptor 4, v 97.6 8.7E-05 3E-09 58.8 5.6 57 60-129 445-502 (570)
92 1p9a_G Platelet glycoprotein I 97.6 0.0001 3.5E-09 54.5 5.7 37 89-129 120-156 (290)
93 2o6q_A Variable lymphocyte rec 97.6 0.00011 3.8E-09 53.4 5.8 36 89-128 129-164 (270)
94 2z80_A TOLL-like receptor 2, v 97.6 6.6E-05 2.3E-09 56.5 4.6 65 60-129 76-157 (353)
95 2ft3_A Biglycan; proteoglycan, 97.6 4.3E-05 1.5E-09 57.1 3.5 64 61-129 194-272 (332)
96 3o6n_A APL1; leucine-rich repe 97.6 9.3E-05 3.2E-09 56.4 5.4 36 89-128 89-124 (390)
97 3oja_A Leucine-rich immune mol 97.6 6.3E-05 2.1E-09 59.7 4.4 54 61-129 35-88 (487)
98 2id5_A Lingo-1, leucine rich r 97.5 0.00011 3.8E-09 57.3 5.6 66 60-129 56-136 (477)
99 2xwt_C Thyrotropin receptor; s 97.5 0.0001 3.5E-09 52.5 4.7 65 60-128 31-112 (239)
100 4glp_A Monocyte differentiatio 97.5 6.8E-05 2.3E-09 55.6 3.8 57 61-128 146-204 (310)
101 1ziw_A TOLL-like receptor 3; i 97.5 0.00012 4.2E-09 59.4 5.5 66 60-129 73-153 (680)
102 3o53_A Protein LRIM1, AGAP0063 97.5 0.00021 7.3E-09 53.1 6.3 36 89-128 140-176 (317)
103 2ast_B S-phase kinase-associat 97.5 3E-05 1E-09 57.6 1.3 66 60-129 70-150 (336)
104 4ay9_X Follicle-stimulating ho 97.4 0.00012 4.1E-09 55.3 4.5 54 47-110 9-71 (350)
105 3cvr_A Invasion plasmid antige 97.4 4.7E-05 1.6E-09 62.0 2.3 68 50-128 50-127 (571)
106 4glp_A Monocyte differentiatio 97.4 0.00011 3.7E-09 54.5 3.8 16 61-76 225-240 (310)
107 3o53_A Protein LRIM1, AGAP0063 97.4 0.0002 6.7E-09 53.3 4.7 65 60-129 169-245 (317)
108 2xwt_C Thyrotropin receptor; s 97.2 0.00017 5.7E-09 51.4 3.0 63 60-128 55-137 (239)
109 3rw6_A Nuclear RNA export fact 97.2 0.00022 7.5E-09 53.0 3.6 68 60-127 170-257 (267)
110 1jl5_A Outer protein YOPM; leu 97.2 1.1E-05 3.7E-10 63.6 -3.7 50 60-123 11-60 (454)
111 1ds9_A Outer arm dynein; leuci 97.2 1.8E-05 6.2E-10 55.2 -2.8 54 60-129 48-101 (198)
112 4fmz_A Internalin; leucine ric 97.0 0.00029 1E-08 52.5 2.8 63 60-129 265-341 (347)
113 1jl5_A Outer protein YOPM; leu 97.0 0.001 3.5E-08 52.2 6.0 63 60-129 91-161 (454)
114 1h6u_A Internalin H; cell adhe 97.0 0.0013 4.3E-08 48.9 6.1 19 89-107 103-121 (308)
115 1ds9_A Outer arm dynein; leuci 97.0 2.6E-05 9E-10 54.3 -3.0 53 61-129 71-123 (198)
116 4fmz_A Internalin; leucine ric 97.0 0.00048 1.6E-08 51.3 3.7 65 60-129 243-319 (347)
117 2ast_B S-phase kinase-associat 97.0 0.00038 1.3E-08 51.6 3.2 75 49-129 38-126 (336)
118 3g06_A SSPH2 (leucine-rich rep 97.0 0.0013 4.4E-08 54.0 6.2 63 61-129 222-292 (622)
119 1xeu_A Internalin C; cellular 97.0 0.0011 3.7E-08 48.3 5.1 51 61-129 64-114 (263)
120 1xeu_A Internalin C; cellular 96.9 0.0011 3.8E-08 48.2 4.8 63 60-129 85-158 (263)
121 2ca6_A RAN GTPase-activating p 96.9 0.0004 1.4E-08 52.8 2.5 35 90-128 213-251 (386)
122 1m9s_A Internalin B; cell inva 96.9 0.0015 5E-08 53.4 5.8 16 60-75 65-80 (605)
123 1h6t_A Internalin B; cell adhe 96.9 0.0012 4E-08 48.7 4.8 62 60-128 112-185 (291)
124 1o6v_A Internalin A; bacterial 96.9 0.0016 5.4E-08 50.8 5.7 35 89-129 349-383 (466)
125 3bz5_A Internalin-J, INLJ; leu 96.8 0.001 3.5E-08 52.3 4.4 58 62-129 288-347 (457)
126 1h6t_A Internalin B; cell adhe 96.8 0.0018 6.1E-08 47.7 5.4 64 60-129 68-142 (291)
127 1h6u_A Internalin H; cell adhe 96.8 0.0022 7.6E-08 47.5 5.9 13 61-73 86-98 (308)
128 2ca6_A RAN GTPase-activating p 96.8 0.00041 1.4E-08 52.8 1.7 34 92-129 273-311 (386)
129 3bz5_A Internalin-J, INLJ; leu 96.7 0.0021 7.2E-08 50.5 5.3 34 89-129 81-114 (457)
130 1m9s_A Internalin B; cell inva 96.7 0.0018 6.2E-08 52.9 4.8 47 60-107 109-167 (605)
131 3goz_A Leucine-rich repeat-con 96.6 0.00055 1.9E-08 51.8 0.9 33 93-129 80-117 (362)
132 3cvr_A Invasion plasmid antige 96.5 0.0044 1.5E-07 50.4 6.0 14 61-74 101-114 (571)
133 1o6v_A Internalin A; bacterial 96.4 0.005 1.7E-07 48.0 5.4 17 91-107 307-323 (466)
134 3goz_A Leucine-rich repeat-con 96.3 0.00054 1.8E-08 51.9 -0.3 65 61-129 52-146 (362)
135 1z7x_W Ribonuclease inhibitor; 95.8 0.0012 4.2E-08 50.8 -0.4 65 61-129 314-406 (461)
136 4ay9_X Follicle-stimulating ho 95.5 0.011 3.8E-07 44.4 3.8 65 60-128 54-135 (350)
137 3rfe_A Platelet glycoprotein I 95.4 0.033 1.1E-06 36.5 5.5 32 94-129 32-63 (130)
138 1z7x_W Ribonuclease inhibitor; 95.3 0.0045 1.5E-07 47.6 1.0 20 89-108 109-128 (461)
139 3g06_A SSPH2 (leucine-rich rep 95.0 0.022 7.6E-07 46.7 4.4 75 43-129 18-109 (622)
140 3ogk_B Coronatine-insensitive 95.0 0.0034 1.2E-07 49.8 -0.6 36 90-128 485-520 (592)
141 3un9_A NLR family member X1; l 94.4 0.01 3.5E-07 45.5 0.9 13 61-73 127-139 (372)
142 3un9_A NLR family member X1; l 94.3 0.011 3.7E-07 45.3 0.8 37 89-129 207-247 (372)
143 3ogk_B Coronatine-insensitive 93.8 0.0092 3.1E-07 47.3 -0.5 31 92-127 219-249 (592)
144 1io0_A Tropomodulin; LRR prote 93.1 0.029 1E-06 38.5 1.3 13 61-73 66-78 (185)
145 2p1m_B Transport inhibitor res 93.0 0.011 3.7E-07 46.9 -1.3 36 90-129 478-514 (594)
146 3rfe_A Platelet glycoprotein I 92.3 0.1 3.5E-06 34.0 3.1 37 61-106 32-68 (130)
147 2ra8_A Uncharacterized protein 92.0 0.022 7.7E-07 43.6 -0.6 35 91-129 277-315 (362)
148 2p1m_B Transport inhibitor res 91.1 0.027 9.3E-07 44.5 -1.0 66 60-129 105-192 (594)
149 1io0_A Tropomodulin; LRR prote 91.0 0.074 2.5E-06 36.4 1.3 57 60-129 93-159 (185)
150 3e4g_A ATP synthase subunit S, 90.4 0.1 3.6E-06 36.2 1.6 66 60-129 61-147 (176)
151 3sb4_A Hypothetical leucine ri 88.8 0.6 2E-05 34.4 4.8 13 61-73 227-239 (329)
152 3sb4_A Hypothetical leucine ri 82.8 1.5 5.1E-05 32.2 4.3 36 89-128 293-328 (329)
153 2ra8_A Uncharacterized protein 79.0 0.59 2E-05 35.6 1.0 34 92-129 251-287 (362)
154 3e4g_A ATP synthase subunit S, 76.1 1.3 4.3E-05 30.6 1.9 37 89-129 81-122 (176)
155 4fdw_A Leucine rich hypothetic 68.8 8.8 0.0003 29.3 5.3 18 89-106 176-193 (401)
156 1pgv_A TMD-1, tropomodulin TMD 62.9 3.4 0.00012 28.9 1.8 13 61-73 71-83 (197)
157 4fdw_A Leucine rich hypothetic 40.7 26 0.00091 26.6 3.8 37 89-128 267-307 (401)
158 4h09_A Hypothetical leucine ri 29.6 77 0.0026 23.1 4.7 35 89-128 306-340 (379)
159 3ox7_P MH027; urokinase-type p 29.2 21 0.00072 15.7 0.9 11 43-54 4-14 (23)
160 4h09_A Hypothetical leucine ri 27.4 63 0.0022 23.6 3.8 36 89-128 282-317 (379)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=8.2e-18 Score=140.13 Aligned_cols=108 Identities=27% Similarity=0.418 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEeCCCCCcEEEEeccCCCcccc---ccCC---
Q 048677 6 GCLETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLNNTKRLNH---YYGT--- 79 (129)
Q Consensus 6 ~~~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~~w~Gv~C~~~~~~v~~l~L~~~~l~G~---i~~~--- 79 (129)
.+.++|++||++||+.+.++ . .+++|.. +.+|| .|.||+|+ .++|++|+|+++++.|. +++.
T Consensus 8 ~~~~~~~~all~~k~~~~~~---~-~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDK---N-LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCT---T-SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHhhCCCc---c-cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCccChhHhc
Confidence 35678999999999999754 4 7899974 57899 99999998 58999999999999997 6643
Q ss_pred --CcceecCc---------cccCCCCCcEEEccCcccccccCCCCcc--ccCCCCCCcEeeCC
Q 048677 80 --SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYD--SFGSLKQLKILDLG 129 (129)
Q Consensus 80 --~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~--~l~~l~~L~~L~Ls 129 (129)
.|..++++ .++.+++|++|+|++|.|+|.+| . .++++++|++|+|+
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT----TLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG----GGGGGGGCTTCCEEECC
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC----ChHHHhCCCCCCEEECc
Confidence 23333322 36778899999999999999888 7 88888888888875
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.6e-17 Score=125.26 Aligned_cols=110 Identities=27% Similarity=0.477 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCC--CCceEeCCCC--CcEEEEeccCCCccc--cccCC
Q 048677 6 GCLETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCDD--WEGVKCNATT--RRVMQLSLNNTKRLN--HYYGT 79 (129)
Q Consensus 6 ~~~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~~--w~Gv~C~~~~--~~v~~l~L~~~~l~G--~i~~~ 79 (129)
.|.++|++||++||+++.++ . .+.+|.. +.+|| . |.||+|+... ++|+.|+|+++++.| .+|..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~---~-~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP---T-TLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC---G-GGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcCCc---c-cccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh
Confidence 59999999999999999654 2 6789965 46799 8 9999998633 799999999999998 77765
Q ss_pred -----CcceecCc-----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 80 -----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 80 -----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.|..++++ .++.+++|++|+|++|.++|.+| ..++.+++|++|+|+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----DFLSQIKTLVTLDFS 133 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----GGGGGCTTCCEEECC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC----HHHhCCCCCCEEeCC
Confidence 34444432 25667888888888888888888 788888888888874
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=3e-15 Score=122.57 Aligned_cols=78 Identities=23% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC-------CCCCCCCCCCCCCCCCCCC---CceEeCCCCCcEEEEeccCCCccccccC
Q 048677 9 ETERTALLEIKSFFISSVSDNKI-------LPSWVGEDDGMPSDCCDDW---EGVKCNATTRRVMQLSLNNTKRLNHYYG 78 (129)
Q Consensus 9 ~~~~~aLl~~k~~l~~~~~~~~~-------l~~W~~~~~~~~~~~C~~w---~Gv~C~~~~~~v~~l~L~~~~l~G~i~~ 78 (129)
..|+.||.+++.++.++. +.. ..+|+. ..++| .| .||+|+. .++|++|+|+++++.|.+|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~--w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKN--WSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp HHHHHHHHHHHHHTTGGG--CCCCC------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEEEECG
T ss_pred HHHHHHHHHHHHHcCCCC--cccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcccCCcCCh
Confidence 468999999999987654 332 237975 57899 99 9999986 48999999999999999998
Q ss_pred CCcceecCccccCCCCCcEEEccCcc
Q 048677 79 TSASLLNMSLFHPFEELQRLDLLGNW 104 (129)
Q Consensus 79 ~~l~~l~ls~~~~l~~L~~L~Ls~N~ 104 (129)
+ ++++++|++|+|++|.
T Consensus 100 ~---------l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 100 A---------IGQLTELEVLALGSHG 116 (636)
T ss_dssp G---------GGGCTTCCEEESCCGG
T ss_pred H---------HhcCccceEEECcCCc
Confidence 8 8999999999999883
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.1e-14 Score=123.73 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CceEeCCCCCcEEEEeccCCCc
Q 048677 7 CLETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDC--CDDW------------EGVKCNATTRRVMQLSLNNTKR 72 (129)
Q Consensus 7 ~~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~--C~~w------------~Gv~C~~~~~~v~~l~L~~~~l 72 (129)
+..+|++||++||+++.++ +|+..++....+| | .| .||+|+. .++|++|+|+++++
T Consensus 266 ~~~~d~~ALl~~k~~l~~~--------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK--------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG--------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred cchHHHHHHHHHHHHcCCC--------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 4467999999999998543 6754310001345 9 99 9999986 58999999999999
Q ss_pred cccccCCCcceecCccccCCCCCcEEEc-cCcccccc
Q 048677 73 LNHYYGTSASLLNMSLFHPFEELQRLDL-LGNWFTGI 108 (129)
Q Consensus 73 ~G~i~~~~l~~l~ls~~~~l~~L~~L~L-s~N~lsG~ 108 (129)
.|.+|+. +++|++|++|+| ++|.++|.
T Consensus 336 ~G~ip~~---------l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 336 KGRVPDA---------IGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp EEEECGG---------GGGCTTCCEEESCCTTHHHHT
T ss_pred CCcCchH---------HhccccceEeeeccccccccc
Confidence 9999988 899999999999 88877776
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=2.6e-13 Score=102.95 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEeCC--------CCCcEEEEeccCCCcccccc
Q 048677 6 GCLETERTALLEIKSFFISSVSDNKILPSWVGEDDGMPSDCCDDWEGVKCNA--------TTRRVMQLSLNNTKRLNHYY 77 (129)
Q Consensus 6 ~~~~~~~~aLl~~k~~l~~~~~~~~~l~~W~~~~~~~~~~~C~~w~Gv~C~~--------~~~~v~~l~L~~~~l~G~i~ 77 (129)
.+..+|++||++||..+..++ .+.+..|.... ....++| .|.|+.|.. ...+|+.|+|+++++. .+|
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~--~~~~~~w~~~~-~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADR--NRWHSAWRQAN-SNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC--TTHHHHHHHHT-TTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred ccCchHHHHHHHHHHhccCCc--hhhhhhhcccc-ccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 466789999999999886554 45567784100 0146789 999999952 2468999999999987 566
Q ss_pred CC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 78 GT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 78 ~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.. .|..++++ .++.+++|++|+|++|.++ .|| ..++.+++|++|+|+
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp----~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALP----ASIASLNRLRELSIR 158 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCC----GGGGGCTTCCEEEEE
T ss_pred hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCc----HHHhcCcCCCEEECC
Confidence 54 34444442 2567788888888888888 788 788888888888763
No 6
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=3.7e-08 Score=74.30 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCCCCceEeCCC-----------CCcEEEEeccC-CCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCC
Q 048677 46 CCDDWEGVKCNAT-----------TRRVMQLSLNN-TKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRA 113 (129)
Q Consensus 46 ~C~~w~Gv~C~~~-----------~~~v~~l~L~~-~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~ 113 (129)
.| .|..|.|... ...++.|+|++ |.+.+..+.. |..+++|+.|+|++|+|+|..|
T Consensus 7 ~C-~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~~~~--- 73 (347)
T 2ifg_A 7 PH-GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKSGLRFVAP--- 73 (347)
T ss_dssp CS-SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSSCCCEECT---
T ss_pred cc-cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhH---------hccccCCCEEECCCCccceeCH---
Confidence 38 8999999753 12378899996 8887765554 6666777777777777777666
Q ss_pred ccccCCCCCCcEeeCC
Q 048677 114 YDSFGSLKQLKILDLG 129 (129)
Q Consensus 114 ~~~l~~l~~L~~L~Ls 129 (129)
..++.+++|++|+|+
T Consensus 74 -~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 74 -DAFHFTPRLSRLNLS 88 (347)
T ss_dssp -TGGGSCSCCCEEECC
T ss_pred -HHhcCCcCCCEEeCC
Confidence 666777777777764
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=7.3e-08 Score=69.26 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=61.7
Q ss_pred CCCCCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEE
Q 048677 43 PSDCCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRL 98 (129)
Q Consensus 43 ~~~~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L 98 (129)
....| .|.+|.|... ...++.|+|++|.+.+..+.. .|..++++ .+..+++|++|
T Consensus 15 ~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 15 SQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 46789 9999999742 245788999999998865543 44555543 25678899999
Q ss_pred EccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 99 DLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 99 ~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|++|.+++-.+ ..+..+++|++|+|+
T Consensus 94 ~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 94 DLGTNQLTVLPS----AVFDRLVHLKELFMC 120 (229)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECC
T ss_pred ECCCCcCCccCh----hHhCcchhhCeEecc
Confidence 999999986555 557889999999875
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.58 E-value=4.2e-08 Score=81.68 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=50.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.|.+|.. .|..++++ .++.+++|+.|||++|+++|.|| ..++.++.|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip----~~l~~l~~L~ 707 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP----QAMSALTMLT 707 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC----GGGGGCCCCS
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC----hHHhCCCCCC
Confidence 35778899999999888866 44455553 26677888888888888888888 8888888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|||+
T Consensus 708 ~L~ls 712 (768)
T 3rgz_A 708 EIDLS 712 (768)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 88875
No 9
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.53 E-value=1.4e-07 Score=65.04 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=55.3
Q ss_pred CCCCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccC
Q 048677 47 CDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLG 102 (129)
Q Consensus 47 C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~ 102 (129)
| .|..+.|... ...++.|+|++|.+.+..+.. .|..++++ .+..+++|++|+|++
T Consensus 9 C-~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 9 C-SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred c-CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5 6777777542 245778999999988765543 44555543 256788888888888
Q ss_pred cccccccCCCCccccCCCCCCcEeeCC
Q 048677 103 NWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 103 N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
|+|++-.| ..+..+++|++|+|+
T Consensus 88 N~l~~~~~----~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 88 NQLKSIPR----GAFDNLKSLTHIWLL 110 (170)
T ss_dssp SCCCCCCT----TTTTTCTTCCEEECC
T ss_pred CccCEeCH----HHhcCCCCCCEEEeC
Confidence 88886555 568888888888874
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.46 E-value=2.5e-07 Score=63.53 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=56.9
Q ss_pred CCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEcc
Q 048677 46 CCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLL 101 (129)
Q Consensus 46 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls 101 (129)
.| .|.++.|... ...++.|+++++.+.+..+.. .|..++++ .+..+++|++|+++
T Consensus 6 ~C-~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 6 SC-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp EE-ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred Ee-CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 46 7999999642 245788999999887543322 34445443 25678899999999
Q ss_pred CcccccccCCCCccccCCCCCCcEeeCC
Q 048677 102 GNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 102 ~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|++++..| ..+..+++|++|+|+
T Consensus 85 ~N~l~~~~~----~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 85 ENKLQSLPN----GVFDKLTQLKELALD 108 (177)
T ss_dssp SSCCCCCCT----TTTTTCTTCCEEECC
T ss_pred CCCccccCH----HHhhCCcccCEEECc
Confidence 999986655 567888999999874
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.45 E-value=2.8e-07 Score=64.75 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=57.4
Q ss_pred CCCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEc
Q 048677 45 DCCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDL 100 (129)
Q Consensus 45 ~~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~L 100 (129)
..| .|.+|.|... ...++.|+++++++.+..+.. .|..++++ .+..+++|++|++
T Consensus 5 C~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 5 CSC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CEE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 357 8999999742 235889999999987543322 34445443 2567888999999
Q ss_pred cCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 101 LGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 101 s~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++|.+++..+ ..+..+++|++|+|+
T Consensus 84 s~n~l~~~~~----~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 84 STNQLQSLPN----GVFDKLTQLKELALN 108 (208)
T ss_dssp CSSCCCCCCT----TTTTTCTTCCEEECC
T ss_pred CCCcCCccCH----hHhcCccCCCEEEcC
Confidence 9999885544 557889999999874
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.41 E-value=3.6e-07 Score=72.43 Aligned_cols=78 Identities=31% Similarity=0.456 Sum_probs=56.9
Q ss_pred CCCCCCceEeCCC-----------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEE
Q 048677 46 CCDDWEGVKCNAT-----------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLD 99 (129)
Q Consensus 46 ~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~ 99 (129)
.| .|.|+ |+.. ...++.|+|+++.+.+..+.. .|..++++ .+..+++|++|+
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 47 88887 7631 236889999999988765543 44555543 266778888888
Q ss_pred ccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 100 LLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 100 Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
|++|.+++..| ..++.+++|++|+|+
T Consensus 81 Ls~n~l~~~~~----~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 81 LSDNHLSSLSS----SWFGPLSSLKYLNLM 106 (549)
T ss_dssp CTTSCCCSCCH----HHHTTCTTCCEEECT
T ss_pred CCCCccCccCH----HHhccCCCCcEEECC
Confidence 88888887766 668888888888874
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.37 E-value=5.5e-07 Score=64.34 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEcc
Q 048677 46 CCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLL 101 (129)
Q Consensus 46 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls 101 (129)
.| .|..|.|... ...++.|+|++|.+.+..+.. .|..++++ .|..+++|++|+|+
T Consensus 10 ~C-~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 10 TC-SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EE-ETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EE-CCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 36 7888888642 135788999999987644333 34444443 25667788888888
Q ss_pred CcccccccCCCCccccCCCCCCcEeeCC
Q 048677 102 GNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 102 ~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|.++ .||. ..+..+++|++|+|+
T Consensus 89 ~N~l~-~l~~---~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 89 GNKIT-ELPK---SLFEGLFSLQLLLLN 112 (220)
T ss_dssp SSCCC-CCCT---TTTTTCTTCCEEECC
T ss_pred CCcCC-ccCH---hHccCCCCCCEEECC
Confidence 88887 4551 335678888888774
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.35 E-value=3.7e-07 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=19.1
Q ss_pred cCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++|++|++++|.+++..+ ..+..+++|++|+|
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPI----GVFDQLVNLAELRL 116 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCT----TTTTTCSSCCEEEC
T ss_pred cCCCCCCEEECCCCcCCcCCH----hHcccccCCCEEEC
Confidence 445556666666665554333 34455666666655
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.34 E-value=6.9e-07 Score=69.24 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCCCCCCc--eEeCCC--------CCcEEEEeccCCCccccccCC-----CcceecCc-----------cccCCCCCcEE
Q 048677 45 DCCDDWEG--VKCNAT--------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS-----------LFHPFEELQRL 98 (129)
Q Consensus 45 ~~C~~w~G--v~C~~~--------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L 98 (129)
..| .|.+ |.|... ..+++.|+|+++.+.+..+.. .|..++++ .+..+++|++|
T Consensus 6 ~~c-~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 6 SEC-SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp -CC-EEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cee-EEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 345 5544 677542 145788888888887654543 34444432 24566777777
Q ss_pred EccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 99 DLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 99 ~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|++|.+++.+| ..++.+++|++|+|+
T Consensus 85 ~Ls~n~l~~~~~----~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 85 KLDYNQFLQLET----GAFNGLANLEVLTLT 111 (455)
T ss_dssp ECTTCTTCEECT----TTTTTCTTCCEEECT
T ss_pred eCCCCccCccCh----hhccCcccCCEEeCC
Confidence 777777777666 667777777777663
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.33 E-value=7.8e-07 Score=62.19 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=51.3
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..|.. .|..++++ .+..+++|++|+|++|++++.+| ..+..+++|+
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 129 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP----GSFEHLNSLT 129 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT----TSSTTCTTCC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH----HHhhcCCCCC
Confidence 46788888888887765543 34445443 26678999999999999999888 8899999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 130 ~L~L~ 134 (192)
T 1w8a_A 130 SLNLA 134 (192)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99874
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=8.6e-07 Score=61.95 Aligned_cols=79 Identities=25% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC------CcceecCc----------cccCCCCCcEEEc
Q 048677 46 CCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT------SASLLNMS----------LFHPFEELQRLDL 100 (129)
Q Consensus 46 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~------~l~~l~ls----------~~~~l~~L~~L~L 100 (129)
.| .|..+.|... ...++.|++++|.+.+..+.. .|..++++ .+..+++|++|+|
T Consensus 7 ~C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 7 HC-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp EE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred EE-CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 36 7888888642 136889999999997654431 34445443 2566788888888
Q ss_pred cCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 101 LGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 101 s~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++|++++..| ..+..+++|++|+|+
T Consensus 86 s~N~l~~~~~----~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 86 GENKIKEISN----KMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSCCCCEECS----SSSTTCTTCCEEECC
T ss_pred CCCcCCccCH----HHhcCCCCCCEEECC
Confidence 8888887777 678888888888874
No 18
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=1.2e-06 Score=60.51 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=44.7
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..|.. .|..++++ .+..+++|++|+|++|++++-.| ..+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR----GAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH----HHhccccCCC
Confidence 34677888888887665543 34444443 24667888888888888885433 4478888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 109 ~L~L~ 113 (174)
T 2r9u_A 109 HIYLY 113 (174)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 88874
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.25 E-value=5.6e-07 Score=65.13 Aligned_cols=65 Identities=29% Similarity=0.345 Sum_probs=39.7
Q ss_pred cEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 61 RVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
.++.|+|+++.+.+..+.. .|..++++ .+..+++|++|+|++|.+++..| ..+..+++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL----GVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh----hHhcccCCCCE
Confidence 3566777777766544332 33333332 14566777777777777775544 55677777777
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 112 L~L~ 115 (251)
T 3m19_A 112 LYLG 115 (251)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7764
No 20
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=60.67 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=54.5
Q ss_pred CCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcc
Q 048677 49 DWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNW 104 (129)
Q Consensus 49 ~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~ 104 (129)
.|..|.|... ...++.|+|++|.+. .+|.. .|..++++ .|..+++|++|+|++|.
T Consensus 11 ~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5666777531 235778888888876 44432 34445443 26778899999999999
Q ss_pred cccccCCCCccccCCCCCCcEeeCC
Q 048677 105 FTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 105 lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+++..| ..+..+++|++|+|+
T Consensus 90 l~~i~~----~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 90 LRCIPP----RTFDGLKSLRLLSLH 110 (193)
T ss_dssp CCBCCT----TTTTTCTTCCEEECC
T ss_pred cCEeCH----HHhCCCCCCCEEECC
Confidence 997777 778899999999874
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.22 E-value=2.1e-06 Score=64.87 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=52.2
Q ss_pred CCCCCCCCCceEeCCC-----------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCc
Q 048677 43 PSDCCDDWEGVKCNAT-----------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQ 96 (129)
Q Consensus 43 ~~~~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~ 96 (129)
....| .|.|+ |+-. ...++.|+++++++.+..+.. .|..++++ .+..+++|+
T Consensus 26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 35678 89987 6521 236889999999987643322 34444443 255667788
Q ss_pred EEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 97 RLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 97 ~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|++++|.+++ +|. ..++.+++|++|+|+
T Consensus 104 ~L~Ls~n~l~~-~~~---~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 104 HLDLSYNYLSN-LSS---SWFKPLSSLTFLNLL 132 (353)
T ss_dssp EEECCSSCCSS-CCH---HHHTTCTTCSEEECT
T ss_pred EEECCCCcCCc-CCH---hHhCCCccCCEEECC
Confidence 88888887774 440 336777788877764
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.21 E-value=1.1e-06 Score=58.47 Aligned_cols=65 Identities=26% Similarity=0.208 Sum_probs=38.1
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc----------cccCCCCCcEEEccCccccc-ccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS----------LFHPFEELQRLDLLGNWFTG-IYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG-~iP~~~~~~l~~l~~L~ 124 (129)
..++.++++++.+.+. +.- .|..++++ .+..+++|++|++++|.+++ ..| ..++.+++|+
T Consensus 42 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~----~~~~~l~~L~ 116 (149)
T 2je0_A 42 EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI----EPLKKLENLK 116 (149)
T ss_dssp TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHH----GGGGGCTTCC
T ss_pred CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHH----HHHhhCCCCC
Confidence 4577788888777654 110 23333332 12346667777777777766 344 5666777777
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+++
T Consensus 117 ~L~l~ 121 (149)
T 2je0_A 117 SLDLF 121 (149)
T ss_dssp EEECT
T ss_pred EEeCc
Confidence 77663
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.21 E-value=6.4e-07 Score=67.02 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=42.8
Q ss_pred CcEEEEeccC-CCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNN-TKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~-~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
..++.|+|++ +++.+.+|.. .|..++++ .+..+++|++|++++|.++|.+| ..++.+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP----PSISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC----GGGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC----hHHhcCCCC
Confidence 3567778874 7777776654 34444432 25566777777777777777777 667777777
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++|+|+
T Consensus 152 ~~L~L~ 157 (313)
T 1ogq_A 152 VGITFD 157 (313)
T ss_dssp CEEECC
T ss_pred CeEECc
Confidence 777663
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.20 E-value=2.2e-06 Score=58.85 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=35.7
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
..++.|+|++|.+.+..+.. .|..++++ .+..+++|++|+|++|.|++..+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 45777888888877543321 34445443 26788999999999999987754
No 25
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.16 E-value=3.2e-06 Score=59.29 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=48.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..+.. .|..++++ .|..+++|++|+|++|.+++-.+ ..+..+++|+
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 129 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE----GAFNDLSALS 129 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh----hhhhcCcccc
Confidence 45777888888877644332 34444443 26788999999999999995444 5688999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 130 ~L~L~ 134 (193)
T 2wfh_A 130 HLAIG 134 (193)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99984
No 26
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.15 E-value=3.3e-06 Score=60.20 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=48.1
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..+.. .|..++++ .+..+++|++|+|++|++++..| ..+..+++|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 156 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLHSLS 156 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCCCCC
Confidence 45778888888887654432 34444443 25677888999999999988878 7888888898
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 157 ~L~L~ 161 (220)
T 2v70_A 157 TLNLL 161 (220)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88874
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.14 E-value=2.9e-06 Score=63.98 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=24.9
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|+|++|.+.|.|| ..++++++|+.+++
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP----~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLP----SLIAQLPANCIILV 308 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCC----GGGGGSCTTCEEEC
T ss_pred hhcCCCCCEEeCCCCCchhhcc----HHHhhccCceEEeC
Confidence 4556677777777777777777 67777777776665
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.13 E-value=1.6e-06 Score=58.83 Aligned_cols=65 Identities=29% Similarity=0.278 Sum_probs=36.1
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc----------cccCCCCCcEEEccCcccccc-cCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS----------LFHPFEELQRLDLLGNWFTGI-YENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~-iP~~~~~~l~~l~~L~ 124 (129)
..++.|+++++.+.+. +.- .|..++++ .+..+++|++|++++|.+++- .+ ..+..+++|+
T Consensus 49 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~l~~L~ 123 (168)
T 2ell_A 49 VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL----EPLKKLECLK 123 (168)
T ss_dssp GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG----GGGSSCSCCC
T ss_pred CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH----HHHhcCCCCC
Confidence 3466677777766543 110 23333332 123366777777777777652 23 4566777777
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+++
T Consensus 124 ~L~l~ 128 (168)
T 2ell_A 124 SLDLF 128 (168)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 77764
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.13 E-value=3.4e-06 Score=60.16 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=52.2
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..+.. .|..++++ .+..+++|++|+|++|.+++..| ..+..+++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~ 132 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN----DSFIGLSSVR 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT----TSSTTCTTCS
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH----hHcCCCccCC
Confidence 56899999999998755433 45555554 26678899999999999998888 8888999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 133 ~L~L~ 137 (220)
T 2v70_A 133 LLSLY 137 (220)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99874
No 30
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.11 E-value=4.6e-06 Score=57.56 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=8.1
Q ss_pred cCCCCCcEEEccCcccc
Q 048677 90 HPFEELQRLDLLGNWFT 106 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~ls 106 (129)
..+++|++|+|++|.|.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 33444555555555444
No 31
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=5.8e-06 Score=58.93 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=33.1
Q ss_pred cEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 61 RVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
.++.|+|++|.+.+..|.. .|..++++ .+..+++|++|+|++|.+++..| ..+..+++|++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 132 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNL 132 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCE
Confidence 4566666666665443322 23333332 13445556666666666655555 45555555555
Q ss_pred eeC
Q 048677 126 LDL 128 (129)
Q Consensus 126 L~L 128 (129)
|+|
T Consensus 133 L~L 135 (220)
T 2v9t_B 133 LSL 135 (220)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.11 E-value=4.7e-06 Score=62.23 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=51.2
Q ss_pred CCCCCCceEeCCC---------CCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccc
Q 048677 46 CCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDS 116 (129)
Q Consensus 46 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~ 116 (129)
.| .|..+.|... ...++.|+|+++++.+..+.. +..+++|++|+|++|.+++..| ..
T Consensus 30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~----~~ 95 (330)
T 1xku_A 30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD---------FKNLKNLHTLILINNKISKISP----GA 95 (330)
T ss_dssp EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT---------TTTCTTCCEEECCSSCCCCBCT----TT
T ss_pred cC-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh---------hccCCCCCEEECCCCcCCeeCH----HH
Confidence 35 7888888631 235778899998887654444 6677788888888888887767 77
Q ss_pred cCCCCCCcEeeCC
Q 048677 117 FGSLKQLKILDLG 129 (129)
Q Consensus 117 l~~l~~L~~L~Ls 129 (129)
++.+++|++|+|+
T Consensus 96 ~~~l~~L~~L~Ls 108 (330)
T 1xku_A 96 FAPLVKLERLYLS 108 (330)
T ss_dssp TTTCTTCCEEECC
T ss_pred hcCCCCCCEEECC
Confidence 7788888888764
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.09 E-value=3.8e-06 Score=58.66 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=33.3
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.++++++.+.+..+.. +..+++|++|++++|.+++.+| ..++.+++|++|+|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~---------l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPN---------LSGLTSLTLLDISHSAHDDSIL----TKINTLPKVNSIDLS 144 (197)
T ss_dssp TCCEEEEECTTCBGGGSCC---------CTTCTTCCEEECCSSBCBGGGH----HHHTTCSSCCEEECC
T ss_pred CCCEEEeECCccCcccChh---------hcCCCCCCEEEecCCccCcHhH----HHHhhCCCCCEEEcc
Confidence 3555566666555433333 5556666666666666666666 566666666666653
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.09 E-value=4.7e-06 Score=62.38 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=48.3
Q ss_pred CCCCCceEeCCC---------CCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCcccc
Q 048677 47 CDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSF 117 (129)
Q Consensus 47 C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l 117 (129)
| .|..+.|... ...++.|+++++.+.+..+.. +..+++|++|++++|.+++..| ..+
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~----~~~ 98 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD---------FKGLQHLYALVLVNNKISKIHE----KAF 98 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTT---------TTTCTTCCEEECCSSCCCEECG----GGS
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhH---------hhCCCCCcEEECCCCccCccCH----hHh
Confidence 6 7888888642 135788999999887654544 5666777777777777776666 667
Q ss_pred CCCCCCcEeeCC
Q 048677 118 GSLKQLKILDLG 129 (129)
Q Consensus 118 ~~l~~L~~L~Ls 129 (129)
+.+++|++|+|+
T Consensus 99 ~~l~~L~~L~L~ 110 (332)
T 2ft3_A 99 SPLRKLQKLYIS 110 (332)
T ss_dssp TTCTTCCEEECC
T ss_pred hCcCCCCEEECC
Confidence 777777777663
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.08 E-value=3.2e-06 Score=69.04 Aligned_cols=57 Identities=7% Similarity=0.172 Sum_probs=44.1
Q ss_pred CcEEEEeccCCCcccc-----------------ccCCCcceecCcccc--CCCCCcEEEccCcccccccCCCCccccCCC
Q 048677 60 RRVMQLSLNNTKRLNH-----------------YYGTSASLLNMSLFH--PFEELQRLDLLGNWFTGIYENRAYDSFGSL 120 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~-----------------i~~~~l~~l~ls~~~--~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l 120 (129)
..++.|+|+++.+.|. +|.. ++ ++++|++|+|++|.+.|.+| ..++++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~---------l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l 272 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED---------LKWDNLKDLTDVEVYNCPNLTKLP----TFLKAL 272 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---------CCGGGCTTCCEEEEECCTTCSSCC----TTTTTC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchh---------hhhcccCCCCEEEecCCcCCccCh----HHHhcC
Confidence 5688999999999985 7766 66 77777777777777777777 777777
Q ss_pred CCCcEeeCC
Q 048677 121 KQLKILDLG 129 (129)
Q Consensus 121 ~~L~~L~Ls 129 (129)
++|++|+|+
T Consensus 273 ~~L~~L~Ls 281 (636)
T 4eco_A 273 PEMQLINVA 281 (636)
T ss_dssp SSCCEEECT
T ss_pred CCCCEEECc
Confidence 777777764
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.05 E-value=7.6e-06 Score=64.97 Aligned_cols=66 Identities=21% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCCceEeCCCCCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccC-CCCCCcEee
Q 048677 49 DWEGVKCNATTRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFG-SLKQLKILD 127 (129)
Q Consensus 49 ~w~Gv~C~~~~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~-~l~~L~~L~ 127 (129)
.+.++.|.. ...++.|+|++|.+.+..|.. ++.+++|++|+|++|.+++.+| ..+. .+++|++|+
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNKITMLRDLD---------EGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLN 175 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSCCCSGGGBC---------GGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEE
T ss_pred cCCCCCccc-cCCCCEEECCCCCCCCCCchh---------hcCCCCCCEEECCCCCCCCcCh----HHHhhhCCcccEEe
Confidence 455566653 345777777777777665544 4555666666666666666655 5554 455555555
Q ss_pred C
Q 048677 128 L 128 (129)
Q Consensus 128 L 128 (129)
|
T Consensus 176 L 176 (487)
T 3oja_A 176 L 176 (487)
T ss_dssp C
T ss_pred c
Confidence 5
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.04 E-value=5.9e-06 Score=65.86 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=40.2
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCC-CCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSL-KQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l-~~L 123 (129)
..++.|+|++|.+.+..|.. .|..++++ .+..+++|++|+|++|++++.+| ..+..+ ++|
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~~L 569 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSL 569 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS----SCTTCCCTTC
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH----HHHHhhhCcC
Confidence 34667777777776654443 34444443 24556677777777777776666 666665 467
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++|+|+
T Consensus 570 ~~L~L~ 575 (635)
T 4g8a_A 570 AFLNLT 575 (635)
T ss_dssp CEEECT
T ss_pred CEEEee
Confidence 777663
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.04 E-value=4.6e-06 Score=61.61 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=53.0
Q ss_pred CCCCCCceEeCCC---------CCcEEEEeccCCCccccccCC------CcceecCc------------cccCCCCCcEE
Q 048677 46 CCDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT------SASLLNMS------------LFHPFEELQRL 98 (129)
Q Consensus 46 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~------~l~~l~ls------------~~~~l~~L~~L 98 (129)
.| .|.+|.|... ...++.|+|+++++.. +|.. .|..++++ .+..+++|++|
T Consensus 6 ~C-~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 6 SC-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EE-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred ee-CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 47 8999999752 2368899999998873 4432 34444443 12246778888
Q ss_pred EccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 99 DLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 99 ~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++++|.++ .+| ..+..+++|++|+++
T Consensus 84 ~Ls~n~i~-~l~----~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 84 DLSFNGVI-TMS----SNFLGLEQLEHLDFQ 109 (306)
T ss_dssp ECCSCSEE-EEE----EEEETCTTCCEEECT
T ss_pred ECCCCccc-cCh----hhcCCCCCCCEEECC
Confidence 88888777 466 678888888888874
No 39
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=8.7e-06 Score=55.69 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=45.0
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|++++|.+.+..+.. .|..++++ .+..+++|++|++++|.+++ +|. ..+..+++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~---~~~~~l~~L~ 127 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPD---GIFDRLTSLQ 127 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT---TTTTTCTTCC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCH---HHhcCCcccC
Confidence 35667777777765432211 34444443 25678999999999999995 551 4468899999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 128 ~L~l~ 132 (177)
T 2o6r_A 128 KIWLH 132 (177)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99985
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.99 E-value=8.8e-06 Score=58.23 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=20.9
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|+|++|+++ .|| ..+..+++|++|+|
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-~lp----~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-ELP----RGIERLTHLTHLAL 142 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-SCC----TTGGGCTTCSEEEC
T ss_pred hCcchhhCeEeccCCccc-ccC----cccccCCCCCEEEC
Confidence 345566666666666666 555 55556666666655
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.98 E-value=7.4e-06 Score=65.30 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=48.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+.|.+++..+.. .|..++++ .|..+++|++|+|++|++++-.| ..+..+++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~----~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG----GGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH----HHhcCCCCCC
Confidence 35899999999998654433 45566654 26678888888888888886544 5678888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 128 ~L~Ls 132 (635)
T 4g8a_A 128 KLVAV 132 (635)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88874
No 42
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.97 E-value=2.5e-06 Score=56.77 Aligned_cols=69 Identities=26% Similarity=0.302 Sum_probs=49.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc-----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
..++.+++++|.+.+.+|.. .|..++++ .+..+++|++|++++|.+++..+.. ...+..+++|
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~l~~L 142 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR-ENVFKLLPQL 142 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHH-HHHHHHCTTC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHH-HHHHHHCCCc
Confidence 46788999999887755432 44455443 3667899999999999998653200 0257889999
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++||++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 999985
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.96 E-value=1e-05 Score=68.04 Aligned_cols=74 Identities=22% Similarity=0.161 Sum_probs=38.2
Q ss_pred CCCceEeCCCCCcEEEEeccCCCccccccCC-----CcceecCc-----------cccCCCCCcEEEccCcccccccCCC
Q 048677 49 DWEGVKCNATTRRVMQLSLNNTKRLNHYYGT-----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENR 112 (129)
Q Consensus 49 ~w~Gv~C~~~~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~ 112 (129)
.|..|.+ - ...++.|+|+.|.+.+..+.. .|..++++ .+.++++|++|+|++|.+++..|
T Consensus 15 ~L~~vP~-l-p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-- 90 (844)
T 3j0a_A 15 NLTQVPQ-V-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-- 90 (844)
T ss_dssp CSSCCCS-S-CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--
T ss_pred CCCCCCC-C-CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH--
Confidence 5666655 2 356677777777666543332 23333332 13445555555555555555545
Q ss_pred CccccCCCCCCcEeeC
Q 048677 113 AYDSFGSLKQLKILDL 128 (129)
Q Consensus 113 ~~~~l~~l~~L~~L~L 128 (129)
..++.+++|++|+|
T Consensus 91 --~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 91 --DAFQGLFHLFELRL 104 (844)
T ss_dssp --TSSCSCSSCCCEEC
T ss_pred --hHccCCcccCEeeC
Confidence 45555555555554
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.94 E-value=1.5e-05 Score=62.20 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=53.7
Q ss_pred CCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCccc
Q 048677 50 WEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWF 105 (129)
Q Consensus 50 w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~l 105 (129)
|..|.|... ...++.|+|+++++.+..+.. .|..++++ .+..+++|++|+|++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 567888642 235789999999998765543 34445443 256678888888888888
Q ss_pred ccccCCCCccccCCCCCCcEeeCC
Q 048677 106 TGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 106 sG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++..+ ..+..+++|++|+|+
T Consensus 136 ~~~~~----~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 136 TVIPS----GAFEYLSKLRELWLR 155 (452)
T ss_dssp SBCCT----TTSSSCTTCCEEECC
T ss_pred CccCh----hhhcccCCCCEEECC
Confidence 85544 557788888888874
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.94 E-value=1.5e-05 Score=62.20 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=50.0
Q ss_pred CCCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcc
Q 048677 49 DWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNW 104 (129)
Q Consensus 49 ~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~ 104 (129)
.|..|.|... ...++.|+|+++.+.+..+.. .|..++++ .+..+++|++|+|++|.
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3667777631 235778899999887754443 34444443 25667778888888887
Q ss_pred cccccCCCCccccCCCCCCcEeeCC
Q 048677 105 FTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 105 lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++.-.+ ..+..+++|++|+|+
T Consensus 92 l~~~~~----~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 92 LKLIPL----GVFTGLSNLTKLDIS 112 (477)
T ss_dssp CCSCCT----TSSTTCTTCCEEECT
T ss_pred CCccCc----ccccCCCCCCEEECC
Confidence 774333 456777888888764
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.90 E-value=1.7e-05 Score=57.15 Aligned_cols=66 Identities=24% Similarity=0.359 Sum_probs=49.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..+.. .|..++++ .+..+++|++|+|++|.+++-.| ..+..+++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 134 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLK 134 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCccc
Confidence 46788888888887654432 44555543 35678999999999999996555 5678999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 135 ~L~Ls 139 (251)
T 3m19_A 135 ELRLN 139 (251)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99985
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=9e-06 Score=69.26 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=44.5
Q ss_pred CcEEEEeccCCCccc-----------------cccCCCcceecCcccc--CCCCCcEEEccCcccccccCCCCccccCCC
Q 048677 60 RRVMQLSLNNTKRLN-----------------HYYGTSASLLNMSLFH--PFEELQRLDLLGNWFTGIYENRAYDSFGSL 120 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G-----------------~i~~~~l~~l~ls~~~--~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l 120 (129)
..++.|+|++|.+.| .+|.. ++ .+++|++|+|++|.+.|.+| ..++++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~---------l~f~~L~~L~~L~Ls~N~l~~~iP----~~l~~L 514 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE---------LSWSNLKDLTDVELYNCPNMTQLP----DFLYDL 514 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---------CCGGGCTTCCEEEEESCTTCCSCC----GGGGGC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChh---------hhhccCCCCCEEECcCCCCCccCh----HHHhCC
Confidence 568899999999998 36665 55 77778888888887777777 777777
Q ss_pred CCCcEeeCC
Q 048677 121 KQLKILDLG 129 (129)
Q Consensus 121 ~~L~~L~Ls 129 (129)
++|++|+|+
T Consensus 515 ~~L~~L~Ls 523 (876)
T 4ecn_A 515 PELQSLNIA 523 (876)
T ss_dssp SSCCEEECT
T ss_pred CCCCEEECc
Confidence 777777764
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.88 E-value=2.2e-05 Score=54.94 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=22.8
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|++++|.+++..+ ..+..+++|++|+|+
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLH 156 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECC
T ss_pred hccCCcCCEEECCCCccceeCH----HHhccCCCccEEEec
Confidence 4456666777777776664433 445666777776653
No 49
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.87 E-value=1.8e-05 Score=60.18 Aligned_cols=78 Identities=24% Similarity=0.274 Sum_probs=53.5
Q ss_pred CCCCCceEeCCC---------CCcEEEEeccCCCccccccCC------CcceecCc----------cccCCCCCcEEEcc
Q 048677 47 CDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT------SASLLNMS----------LFHPFEELQRLDLL 101 (129)
Q Consensus 47 C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~------~l~~l~ls----------~~~~l~~L~~L~Ls 101 (129)
| .+.-+.|... ...++.|+|++|.+.+..+.. .|..++++ .|..+++|++|+|+
T Consensus 18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred E-CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5 5777777541 233678999999887643321 34444443 26678888889998
Q ss_pred CcccccccCCCCccccCCCCCCcEeeCC
Q 048677 102 GNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 102 ~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|++++-.+ ..+..+++|++|+|+
T Consensus 97 ~N~l~~~~~----~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 97 SNHLHTLDE----FLFSDLQALEVLLLY 120 (361)
T ss_dssp SSCCCEECT----TTTTTCTTCCEEECC
T ss_pred CCcCCcCCH----HHhCCCcCCCEEECC
Confidence 888886555 567888888888874
No 50
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.85 E-value=1.8e-05 Score=59.40 Aligned_cols=57 Identities=19% Similarity=0.032 Sum_probs=45.5
Q ss_pred CCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 59 TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
...++.|+|++|.|.+..+.. |..+++|+.|+|++|+|++ +| +.+.....|++|+|.
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~-~~----~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDA---------FHFTPRLSRLNLSFNALES-LS----WKTVQGLSLQELVLS 111 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTG---------GGSCSCCCEEECCSSCCSC-CC----STTTCSCCCCEEECC
T ss_pred ccCCCEEECCCCccceeCHHH---------hcCCcCCCEEeCCCCccce-eC----HHHcccCCceEEEee
Confidence 356889999999999877766 8899999999999999995 55 444333349999874
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.85 E-value=6.4e-06 Score=68.59 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=40.1
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
..++.|+|++|.+. .+|.. .|..++++ .++.+++|++|+|++|.|+ .|| ..|+.|++|++
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp----~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP----AELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC----SSGGGGTTCSE
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC----hhhcCCCCCCE
Confidence 45677888888775 34433 33444442 2456667777777777777 667 66667777777
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 298 L~L~ 301 (727)
T 4b8c_D 298 FYFF 301 (727)
T ss_dssp EECC
T ss_pred EECC
Confidence 6663
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.85 E-value=9.1e-06 Score=64.11 Aligned_cols=34 Identities=35% Similarity=0.311 Sum_probs=20.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|+|++|+++ .|| .. .+++|++|+|+
T Consensus 65 ~~~l~~L~~L~Ls~N~l~-~lp----~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLV-KIS----CH--PTVNLKHLDLS 98 (520)
T ss_dssp GTTCTTCCEEECCSSCCC-EEE----CC--CCCCCSEEECC
T ss_pred hhcccCCCEEecCCCcee-ecC----cc--ccCCccEEecc
Confidence 555666666666666666 465 44 56666666653
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=1.7e-05 Score=64.45 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=47.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc--------cccCCCCCcEEEccCccccccc-CCCCccccCCCCCCcE
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS--------LFHPFEELQRLDLLGNWFTGIY-ENRAYDSFGSLKQLKI 125 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG~i-P~~~~~~l~~l~~L~~ 125 (129)
..++.|+|++|.+. .+|.. .|..++++ .++.+++|+.|+|++|.+++.+ | ..++.+++|++
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p----~~l~~l~~L~~ 537 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI----QPLVSCPRLVL 537 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT----GGGGGCTTCCE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc----HHHhcCCCCCE
Confidence 35677777777776 45443 33344332 3677889999999999999887 8 88999999999
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 538 L~L~ 541 (567)
T 1dce_A 538 LNLQ 541 (567)
T ss_dssp EECT
T ss_pred EEec
Confidence 9875
No 54
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.84 E-value=1.1e-05 Score=54.70 Aligned_cols=65 Identities=28% Similarity=0.298 Sum_probs=48.6
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc-----------cccCCCCCcEEEccCcccccccCCCCcc----ccCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENRAYD----SFGS 119 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~----~l~~ 119 (129)
.+++.++|++|.+.+.+|.. .|..++++ .+..+++|++|++++|.+++ +| . .+..
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~----~~~~~~~~~ 145 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LN----DYRESVFKL 145 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-ST----THHHHHHTT
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hH----HHHHHHHHh
Confidence 46788899999887754432 34444443 35678999999999999985 45 4 6889
Q ss_pred CCCCcEeeCC
Q 048677 120 LKQLKILDLG 129 (129)
Q Consensus 120 l~~L~~L~Ls 129 (129)
+++|++|+++
T Consensus 146 l~~L~~L~l~ 155 (168)
T 2ell_A 146 LPQLTYLDGY 155 (168)
T ss_dssp CSSCCEETTE
T ss_pred CccCcEecCC
Confidence 9999999873
No 55
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.81 E-value=1.8e-05 Score=65.97 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=51.1
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
..++.|+|++|.+. .+|.. .|..++++ .++.+++|++|+|++|.|+ .|| ..|+.+++|++
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp----~~~~~l~~L~~ 320 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLP----WEFGNLCNLQF 320 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCC----SSTTSCTTCCC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccC----hhhhcCCCccE
Confidence 45677888888887 56653 45555554 3678899999999999997 899 88999999999
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 321 L~L~ 324 (727)
T 4b8c_D 321 LGVE 324 (727)
T ss_dssp EECT
T ss_pred EeCC
Confidence 9985
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.81 E-value=3.2e-05 Score=56.49 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=47.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|++++|.+.+..+.. .|..++++ .+..+++|++|++++|.+++..| ..++.+++|+
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 208 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQ 208 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCC
Confidence 46788888888887543322 34444443 25678899999999999998666 6688899999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 209 ~L~l~ 213 (272)
T 3rfs_A 209 YIWLH 213 (272)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98874
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.80 E-value=2.5e-05 Score=62.61 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=43.8
Q ss_pred CcEEEEeccCCCcccc-ccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNH-YYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~-i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
..++.++++++.+.+. +|.. .|..++++ .+..+++|+.|++++|++++.+| ..+..+++|
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L 523 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSL 523 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG----GGTTTCTTC
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH----HHccCCCcC
Confidence 4567777777777663 3332 33444432 25667778888888888887777 777777777
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++|+|+
T Consensus 524 ~~L~l~ 529 (606)
T 3vq2_A 524 STLDCS 529 (606)
T ss_dssp CEEECT
T ss_pred CEEECC
Confidence 777764
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.80 E-value=2.6e-05 Score=62.53 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=44.0
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
.+++.|+|+++.+.+..+.. .|..++++ .|..+++|++|+|++|.+++..| ..++.+++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT----TSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh----hhcCCcccCC
Confidence 45777888888776654432 34444443 25667777777777777777667 6777777777
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 108 ~L~L~ 112 (606)
T 3vq2_A 108 NLVAV 112 (606)
T ss_dssp EEECT
T ss_pred EEEcc
Confidence 77763
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.80 E-value=2.2e-05 Score=62.79 Aligned_cols=56 Identities=23% Similarity=0.175 Sum_probs=30.2
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..++.|+|++|.+.+..+.. +..+++|++|+|++|.+++..| ..++.+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L 107 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPD---------ISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDV 107 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGG---------TTTCTTCCEEECCSCCCCEECT----TTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCCccccChhh---------hccCCCccEEECCCCCCCcCCH----HHhCCCCCCCEEEC
Confidence 35666777777665544333 4445555555555555554444 44555555555554
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.80 E-value=1.8e-05 Score=62.63 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=52.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCccccc-ccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTG-IYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG-~iP~~~~~~l~~l~~L 123 (129)
..++.|+|+++.+.+..+.. .|..++++ .++.+++|++|++++|.+++ .+| ..++.+++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L 125 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNLTNL 125 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTCTTC
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh----hhhhccCCc
Confidence 56888999999888765443 45666654 26789999999999999997 577 789999999
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++|+++
T Consensus 126 ~~L~L~ 131 (549)
T 2z81_A 126 QTLRIG 131 (549)
T ss_dssp CEEEEE
T ss_pred cEEECC
Confidence 999873
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.79 E-value=2.8e-05 Score=54.10 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=34.5
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|++++|.+++..| ..++.+++|++|+|+
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDIS 120 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECC
T ss_pred hhcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEec
Confidence 6788999999999999999889 899999999999985
No 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.79 E-value=2.5e-05 Score=60.45 Aligned_cols=65 Identities=29% Similarity=0.325 Sum_probs=36.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+++.+.+..+.. .|..++++ .+..+++|++|+|++|++++.+| ..+..+++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~ 374 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLK 374 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT----TTTTTCTTCC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh----hhcccccccc
Confidence 34666777777666544332 33333332 24456666666666666666555 5566666666
Q ss_pred EeeC
Q 048677 125 ILDL 128 (129)
Q Consensus 125 ~L~L 128 (129)
+|+|
T Consensus 375 ~L~L 378 (455)
T 3v47_A 375 ELAL 378 (455)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6665
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.78 E-value=2.6e-05 Score=62.48 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=50.6
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+++.+.+..|.. .|..++++ .|..+++|++|+|++|.+++..| ..++.+++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE----TALSGPKALK 108 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT----TTTSSCTTCC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh----hhhccccccc
Confidence 45788999999988765543 45555553 26678888899999888888878 7888888898
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 109 ~L~L~ 113 (606)
T 3t6q_A 109 HLFFI 113 (606)
T ss_dssp EEECT
T ss_pred Eeecc
Confidence 88874
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.78 E-value=3.5e-05 Score=56.21 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=23.6
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|++++|.+++..| ..++.+++|++|+|+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLS 165 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECC
T ss_pred hccCCCCCEEECCCCccCccCH----HHhccCccCCEEECC
Confidence 4556677777777777765444 445667777777663
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.75 E-value=3.6e-05 Score=58.50 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=52.1
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|++|.+.+..+.. .|..++++ .|..+++|++|+|++|.+++..| ..+..+++|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~ 139 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQ 139 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCC
Confidence 56788888888887644332 45555554 26788999999999999998878 8899999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 140 ~L~L~ 144 (361)
T 2xot_A 140 KLYLS 144 (361)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99985
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.75 E-value=4e-05 Score=56.00 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=21.1
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|+.|++++|.+++.+| ..+..+++|++|+|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYL 208 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEEC
T ss_pred hcCccccCEEECCCCcccccCH----hHccCcccccEeeC
Confidence 4445566666666666665555 55555666666555
No 67
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=2.8e-05 Score=63.06 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=41.7
Q ss_pred cEEEEeccCCCccccccCC----CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 61 RVMQLSLNNTKRLNHYYGT----SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~----~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
.++.|+|++|.+.+ +|.- .|..++++ .++.+++|+.|+|++|.+++ || .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEE
Confidence 46789999999876 4432 33444443 25567777777777777776 54 577777777777
Q ss_pred CC
Q 048677 128 LG 129 (129)
Q Consensus 128 Ls 129 (129)
|+
T Consensus 515 Ls 516 (567)
T 1dce_A 515 LC 516 (567)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.74 E-value=3.5e-05 Score=60.71 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc------------cccCCCCCcEEEccCcccccccCCCCccc-cCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS------------LFHPFEELQRLDLLGNWFTGIYENRAYDS-FGSLK 121 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls------------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~-l~~l~ 121 (129)
..++.++++++.+.+.+|.. .|..++++ .+..+++|++|++++|.+++.+| .. +..++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~----~~~~~~l~ 399 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK----KGDCSWTK 399 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG----GCSCCCCT
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc----cchhccCc
Confidence 56788888888888766644 34444442 14567888888888888888777 54 67778
Q ss_pred CCcEeeCC
Q 048677 122 QLKILDLG 129 (129)
Q Consensus 122 ~L~~L~Ls 129 (129)
+|++|+|+
T Consensus 400 ~L~~L~Ls 407 (520)
T 2z7x_B 400 SLLSLNMS 407 (520)
T ss_dssp TCCEEECC
T ss_pred cCCEEECc
Confidence 88888774
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.73 E-value=4.2e-05 Score=55.62 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=46.1
Q ss_pred cEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 61 RVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
.++.|+++++++.+..+.. .|..++++ .+..+++|++|++++|.+++..| ..+..+++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh----hhhcCCccccE
Confidence 4677778777776543322 33444442 26678889999999999887777 77888999998
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+++
T Consensus 105 L~l~ 108 (276)
T 2z62_A 105 LVAV 108 (276)
T ss_dssp EECT
T ss_pred EECC
Confidence 8874
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.73 E-value=3.9e-05 Score=56.08 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=41.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcc-cccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNW-FTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~-lsG~iP~~~~~~l~~l~~L 123 (129)
..++.|+++++.+.+..+.. .|..++++ .+..+++|++|++++|. +....| ..+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----ATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----TTTTTCTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH----HHhcCCcCC
Confidence 35677777777776543322 23333332 25667788888888887 444335 677788888
Q ss_pred cEeeCC
Q 048677 124 KILDLG 129 (129)
Q Consensus 124 ~~L~Ls 129 (129)
++|+|+
T Consensus 108 ~~L~l~ 113 (285)
T 1ozn_A 108 HTLHLD 113 (285)
T ss_dssp CEEECT
T ss_pred CEEECC
Confidence 888774
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.72 E-value=5.2e-05 Score=55.85 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=25.5
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCC-CCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLK-QLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~-~L~~L~Ls 129 (129)
+..+++|++|++++|.+++.+| ..+..++ +|++|+|+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLT 256 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSS----SSCCCCCTTCCEEECT
T ss_pred ccCcccCCEeECCCCCCcccCH----HHHHhhhccCCEEEcc
Confidence 4456677777777777777777 6676663 67777764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.72 E-value=2.7e-05 Score=57.91 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=24.3
Q ss_pred ccCCCCCcEEEccCccccccc--CCCCcccc--CCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIY--ENRAYDSF--GSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~i--P~~~~~~l--~~l~~L~~L~Ls 129 (129)
++.+++|++|++++|++.|.+ | ..+ +.+++|++|+|+
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLI----SALCPLKFPTLQVLALR 209 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHH----HHSCTTSCTTCCEEECT
T ss_pred hccCCCCCEEECCCCCcCcchHHH----HHHHhccCCCCCEEECC
Confidence 556777777777777777663 3 344 667777777663
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.71 E-value=3.8e-05 Score=61.53 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=50.7
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+++.+.+..|.. .|..++++ .++.+++|++|++++|.+++-.| ..++.+++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~----~~~~~l~~L~ 132 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF----IPLHNQKTLE 132 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG----SCCTTCTTCC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc----chhccCCccc
Confidence 45777888888776654443 44555443 26789999999999999998767 7899999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 133 ~L~L~ 137 (606)
T 3t6q_A 133 SLYLG 137 (606)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99985
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.70 E-value=7.4e-05 Score=58.02 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=53.3
Q ss_pred CCceEeCCC---------CCcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCccc
Q 048677 50 WEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWF 105 (129)
Q Consensus 50 w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~l 105 (129)
|..|.|... ...++.|+|+++++.+..+.. .|..++++ .|..+++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 567888641 234678999999987654433 44455543 356788888899988888
Q ss_pred ccccCCCCccccCCCCCCcEeeCC
Q 048677 106 TGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 106 sG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+.-.+ ..+..+++|++|+|+
T Consensus 125 ~~~~~----~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 125 TTIPN----GAFVYLSKLKELWLR 144 (440)
T ss_dssp SSCCT----TTSCSCSSCCEEECC
T ss_pred CeeCH----hHhhccccCceeeCC
Confidence 85444 568888889888874
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.69 E-value=5.1e-05 Score=55.20 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=48.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+++++.+.+..+.. .|..++++ .+..+++|++|++++|.+++..+ ..++.+++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc----hhcccCCCCC
Confidence 45777777777776543322 34444443 26788999999999999998766 6799999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+++
T Consensus 128 ~L~l~ 132 (276)
T 2z62_A 128 ELNVA 132 (276)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99985
No 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.68 E-value=2.9e-05 Score=53.13 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=17.0
Q ss_pred cCCCCCcEEEccCcccccccCCCCcc--ccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYD--SFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~--~l~~l~~L~~L~L 128 (129)
..+++|++|++++|.+ +.+| . .+..+++|++|++
T Consensus 85 ~~l~~L~~L~L~~N~i-~~~~----~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 85 QALPDLTELILTNNSL-VELG----DLDPLASLKSLTYLCI 120 (176)
T ss_dssp HHCTTCCEEECCSCCC-CCGG----GGGGGGGCTTCCEEEC
T ss_pred hcCCCCCEEECCCCcC-Ccch----hhHhhhcCCCCCEEEe
Confidence 3445555555555555 2344 3 4445555555554
No 77
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=4.6e-06 Score=62.08 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCCCCcEEEccCccccc--ccCCCCccccCCCCCCcEeeCC
Q 048677 91 PFEELQRLDLLGNWFTG--IYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 91 ~l~~L~~L~Ls~N~lsG--~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++++|+.|+|++|++++ .|| ..+..+++|+.|+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~----~~~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS----SIVQKAPNLKILNLS 204 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT----THHHHSTTCCEEECT
T ss_pred hCCCCCEEECCCCCCCCCccch----hHHhhCCCCCEEECC
Confidence 47899999999999998 777 777888999999885
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.67 E-value=3e-05 Score=63.00 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=46.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
.+++.|+|+++.+.+..+.. .|..++++ .++.+++|++|+|++|.+++ +|. ..++.+++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~---~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSD---KTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCT---TTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cCh---hhhccCCCCC
Confidence 46888999988887654432 44555543 14567888999999988884 551 4688899999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 101 ~L~L~ 105 (680)
T 1ziw_A 101 ELHLM 105 (680)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98874
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.67 E-value=5.9e-05 Score=56.20 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=44.5
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.++++++.+.+..+.. .|..++++ .+..+++|+.|++++|.++ .+| ..+..+++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp----~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP----GGLADHKYIQ 266 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC----TTTTTCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC----hhhccCCCcC
Confidence 35677777777776543322 33334332 2566788888888888888 778 7788888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 267 ~L~l~ 271 (330)
T 1xku_A 267 VVYLH 271 (330)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88874
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.67 E-value=7.5e-05 Score=60.33 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=11.2
Q ss_pred cEEEEeccCCCcccccc
Q 048677 61 RVMQLSLNNTKRLNHYY 77 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~ 77 (129)
.++.|+|+++.+.+..+
T Consensus 76 ~L~~L~L~~n~l~~~~~ 92 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDT 92 (597)
T ss_dssp CCSEEECTTSCCCEECT
T ss_pred CCcEEECCCCCCCCCCh
Confidence 46677777777765443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.64 E-value=7.9e-05 Score=55.15 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=19.4
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|+.|+|++|+++ .+|. ..+..+++|++|+|
T Consensus 144 ~~~l~~L~~L~L~~N~l~-~l~~---~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT-ELPA---GLLNGLENLDTLLL 179 (290)
T ss_dssp TTTCTTCCEEECTTSCCS-CCCT---TTTTTCTTCCEEEC
T ss_pred cccccCCCEEECCCCcCC-ccCH---HHhcCcCCCCEEEC
Confidence 344556666666666665 3330 23455666666665
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.63 E-value=7.1e-05 Score=59.81 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCcEEEEeccCCCccccccCC-----CcceecCc------------cccCCCCCcEEEccCcccccccCCCCccc-cCCC
Q 048677 59 TRRVMQLSLNNTKRLNHYYGT-----SASLLNMS------------LFHPFEELQRLDLLGNWFTGIYENRAYDS-FGSL 120 (129)
Q Consensus 59 ~~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls------------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~-l~~l 120 (129)
...++.+++++|.+.+.+|.. .|..++++ .+..+++|++|++++|.+++.+| .. +..+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~~l 427 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----DRTCAWA 427 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----SCCCCCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----hhhhcCc
Confidence 356788888888888766544 34444442 15677888888888888888787 43 6778
Q ss_pred CCCcEeeCC
Q 048677 121 KQLKILDLG 129 (129)
Q Consensus 121 ~~L~~L~Ls 129 (129)
++|++|+|+
T Consensus 428 ~~L~~L~l~ 436 (562)
T 3a79_B 428 ESILVLNLS 436 (562)
T ss_dssp TTCCEEECC
T ss_pred ccCCEEECC
Confidence 888888874
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.63 E-value=4.1e-05 Score=52.33 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=41.2
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCcccc-CCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSF-GSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l-~~l~~L~~L~Ls 129 (129)
.++.|++++|.+.+. .. +..+++|++|++++|.+++ +| +.+ ..+++|++|+|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~---------l~~l~~L~~L~Ls~N~l~~-~~----~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DG---------FPLLRRLKTLLVNNNRICR-IG----EGLDQALPDLTELILT 96 (176)
T ss_dssp CCSEEECCSSCCCEE--CC---------CCCCSSCCEEECCSSCCCE-EC----SCHHHHCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc--cc---------cccCCCCCEEECCCCcccc-cC----cchhhcCCCCCEEECC
Confidence 566777777776542 22 7789999999999999995 56 454 899999999985
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.63 E-value=2.2e-05 Score=58.43 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=29.8
Q ss_pred CCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++|++|+|++|++++..| ..++.+++|++|+|+
T Consensus 149 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC----EQVRVFPALSTLDLS 181 (312)
T ss_dssp TTCCEEEEESCSCCCCCT----TTCCCCSSCCEEECC
T ss_pred CCCcEEEeeCCCCccchH----HHhccCCCCCEEECC
Confidence 889999999999998887 889999999999985
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.62 E-value=6.1e-05 Score=59.67 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=22.6
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|++++|++++..| ..+..+++|++|+++
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLH 526 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECC
T ss_pred hhcccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEec
Confidence 4455666666666666666555 556666666666653
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.61 E-value=6.1e-05 Score=58.68 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=20.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|+.|+|++|++++..+ ..+..+++|++|+|
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHL 297 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEc
Confidence 4455666666666666664333 44555666666665
No 87
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.61 E-value=7.4e-05 Score=58.03 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=36.5
Q ss_pred cEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 61 RVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
.++.|+|++|.+.+..+.. .|..++++ .+..+++|+.|+|++|++++..+ ..+..+++|++
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 283 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLER 283 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCE
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCE
Confidence 4555666666665543332 23333332 24556677777777777774444 45566777777
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 284 L~L~ 287 (440)
T 3zyj_A 284 IHLH 287 (440)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7663
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.60 E-value=4.7e-05 Score=63.94 Aligned_cols=37 Identities=41% Similarity=0.671 Sum_probs=21.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|+|++|.+++..|. ..++++++|++|+|
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDF 155 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEE
T ss_pred ccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEEC
Confidence 44556666666666666655431 34666666666665
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.60 E-value=7.4e-05 Score=60.37 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=40.8
Q ss_pred EEEEeccCCCccccccCC------CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 62 VMQLSLNNTKRLNHYYGT------SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 62 v~~l~L~~~~l~G~i~~~------~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
+..+++.++.+.. +|+. .|..++++ .++.+++|++|+|++|.+++..| ..++.+++|++
T Consensus 53 l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 127 (597)
T 3oja_B 53 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTV 127 (597)
T ss_dssp CSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred ceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH----HHHcCCCCCCE
Confidence 4567777776643 4432 34555543 35667778888888888777666 56677777777
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 128 L~L~ 131 (597)
T 3oja_B 128 LVLE 131 (597)
T ss_dssp EECC
T ss_pred EEee
Confidence 7764
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.59 E-value=0.00013 Score=55.50 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=21.4
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|++++|.+++..| ..+..+++|++|++
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQL 172 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEEC
T ss_pred hcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEEC
Confidence 3455666666666666665444 45666666666665
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.59 E-value=8.7e-05 Score=58.77 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=50.2
Q ss_pred CcEEEEeccCCCcc-ccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 60 RRVMQLSLNNTKRL-NHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 60 ~~v~~l~L~~~~l~-G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
..++.++++++.+. +.+|.. +..+++|++|++++|.+++.+| ..+..+++|++|+|+
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~---------~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDI---------FTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMA 502 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSC---------CTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECC
T ss_pred CcCcEEECcCCcCccccchhh---------hhcccCCCEEECCCCccccCCh----hhhhcccCCCEEeCC
Confidence 46889999999987 567766 8889999999999999999888 889999999999984
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.58 E-value=0.0001 Score=54.53 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|++|+|++|++++-.| ..+..+++|++|+|+
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLA 156 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECT
T ss_pred HcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECC
Confidence 4556666666666666664433 445666667766653
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.58 E-value=0.00011 Score=53.40 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=20.0
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|+|++|.+++-.+ ..+..+++|++|+|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRL 164 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred hCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEe
Confidence 3445566666666666554333 33556666666665
No 94
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.58 E-value=6.6e-05 Score=56.52 Aligned_cols=65 Identities=29% Similarity=0.424 Sum_probs=50.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCcc--ccCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYD--SFGSLKQ 122 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~--~l~~l~~ 122 (129)
..++.|+++++.+.+..+.. .|..++++ .+..+++|++|++++|.++ .+| . .+..+++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~----~~~~~~~l~~ 150 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLG----ETSLFSHLTK 150 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSC----SSCSCTTCTT
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccC----chhhhccCCC
Confidence 56889999999988754432 45566654 2667899999999999998 577 5 6889999
Q ss_pred CcEeeCC
Q 048677 123 LKILDLG 129 (129)
Q Consensus 123 L~~L~Ls 129 (129)
|++|+++
T Consensus 151 L~~L~l~ 157 (353)
T 2z80_A 151 LQILRVG 157 (353)
T ss_dssp CCEEEEE
T ss_pred CcEEECC
Confidence 9999873
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.58 E-value=4.3e-05 Score=57.07 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=44.6
Q ss_pred cEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 61 RVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
.++.+++++|.+.+..+.. .|..++++ .+..+++|+.|++++|+++ .|| ..+..+++|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp----~~l~~l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP----AGLPDLKLLQV 268 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC----TTGGGCTTCCE
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC----hhhhcCccCCE
Confidence 5666777777776543322 33344432 2566788889999998888 788 77888888888
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+|+
T Consensus 269 L~l~ 272 (332)
T 2ft3_A 269 VYLH 272 (332)
T ss_dssp EECC
T ss_pred EECC
Confidence 8874
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.57 E-value=9.3e-05 Score=56.36 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=18.7
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
+..+++|++|+|++|.+++..| ..++.+++|++|+|
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVL 124 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred ccCCCCcCEEECCCCCCCcCCH----HHhcCCCCCCEEEC
Confidence 3445555555555555554444 44455555555554
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.56 E-value=6.3e-05 Score=59.65 Aligned_cols=54 Identities=28% Similarity=0.387 Sum_probs=35.8
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.|+|+++.+.+..|.. +..+++|++|+|++|.+++.+| ++.+++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls 88 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAAD---------LAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLN 88 (487)
T ss_dssp GCCEEECCSSCCCCCCGGG---------GTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHH---------HhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEec
Confidence 6888888888887755544 5566666666666666665432 5556666666653
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.54 E-value=0.00011 Score=57.28 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=52.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+++.+.+..|.. .|..++++ .+..+++|++|+|++|.+++.+| ..+..+++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLK 131 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT----TTTTTCTTCC
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh----hHccccccCC
Confidence 46888899988887765543 45555553 26778999999999999999888 8899999999
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 132 ~L~l~ 136 (477)
T 2id5_A 132 SLEVG 136 (477)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99874
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.51 E-value=0.0001 Score=52.53 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc-----------cccCCCCCcEEEccC-cccccccCCCCccccCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS-----------LFHPFEELQRLDLLG-NWFTGIYENRAYDSFGSLKQ 122 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L~Ls~-N~lsG~iP~~~~~~l~~l~~ 122 (129)
..++.|+++++++.+..+.. .|..++++ .+..+++|++|++++ |.+++-.| ..+..+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~----~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP----DALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT----TSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH----HHhCCCCC
Confidence 36788999999887644323 22332221 245667777777777 77775444 55677777
Q ss_pred CcEeeC
Q 048677 123 LKILDL 128 (129)
Q Consensus 123 L~~L~L 128 (129)
|++|++
T Consensus 107 L~~L~l 112 (239)
T 2xwt_C 107 LKFLGI 112 (239)
T ss_dssp CCEEEE
T ss_pred CCEEeC
Confidence 777765
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.51 E-value=6.8e-05 Score=55.63 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=28.7
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccc--cCCCCccccCCCCCCcEeeC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGI--YENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~--iP~~~~~~l~~l~~L~~L~L 128 (129)
.++.|+|++|.+.+..+.. +..+++|++|+|++|++.+. +|.. ..++.+++|++|+|
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L 204 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQ---------VRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLAL 204 (310)
T ss_dssp CCCEEEEECCSSCCCCTTS---------CCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBC
T ss_pred CCCEEEeeCCCcchhhHHH---------hccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEEC
Confidence 4555566666554433333 44556666666666665543 2200 12245555555554
No 101
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.50 E-value=0.00012 Score=59.44 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=44.8
Q ss_pred CcEEEEeccCCCccccccCC-----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT-----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~-----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.|+|+++.+.+..+.. .|..++++ .++.+++|++|++++|.+++..| ..++++++|+
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~ 148 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQ 148 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCC
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc----hhhcccccCC
Confidence 34677777777766432211 34444442 26677888888888888888877 7788888888
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+++
T Consensus 149 ~L~L~ 153 (680)
T 1ziw_A 149 ELLLS 153 (680)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 88774
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.48 E-value=0.00021 Score=53.13 Aligned_cols=36 Identities=25% Similarity=0.107 Sum_probs=18.9
Q ss_pred ccCCCCCcEEEccCcccccccCCCCcccc-CCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSF-GSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l-~~l~~L~~L~L 128 (129)
+..+++|++|++++|.+++..| ..+ ..+++|++|+|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNL 176 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEEC
T ss_pred hhccCCCCEEECCCCCCCcccH----HHHhhccCcCCEEEC
Confidence 3445556666666666555544 443 24555555554
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.46 E-value=3e-05 Score=57.65 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=40.3
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc-----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLK 124 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~ 124 (129)
..++.+++.++.+.+.++.. .|..++++ .+..+++|++|+|++|.+++.+| ..++.+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH----HHHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH----HHHhcCCCCC
Confidence 34666667666665544332 33333332 14556777777777777777777 6677777777
Q ss_pred EeeCC
Q 048677 125 ILDLG 129 (129)
Q Consensus 125 ~L~Ls 129 (129)
+|+|+
T Consensus 146 ~L~L~ 150 (336)
T 2ast_B 146 RLNLS 150 (336)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77763
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.44 E-value=0.00012 Score=55.27 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=37.3
Q ss_pred CCCCCceEeCCC---------CCcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccC
Q 048677 47 CDDWEGVKCNAT---------TRRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYE 110 (129)
Q Consensus 47 C~~w~Gv~C~~~---------~~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP 110 (129)
| .+..|.|... ...++.|+|++|.+...-+.. |..+++|++|+|++|.+.+.||
T Consensus 9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~---------f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGA---------FSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTS---------STTCTTCCEEEEECCTTCCEEC
T ss_pred e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHH---------HcCCCCCCEEECcCCCCCCccC
Confidence 6 7888999642 135788999999886432233 5667777777777777766666
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.43 E-value=4.7e-05 Score=62.01 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=43.5
Q ss_pred CCce-EeCCCCCcEEEEeccCCCccccccCC---CcceecCcc--c----cCCCCCcEEEccCcccccccCCCCccccCC
Q 048677 50 WEGV-KCNATTRRVMQLSLNNTKRLNHYYGT---SASLLNMSL--F----HPFEELQRLDLLGNWFTGIYENRAYDSFGS 119 (129)
Q Consensus 50 w~Gv-~C~~~~~~v~~l~L~~~~l~G~i~~~---~l~~l~ls~--~----~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~ 119 (129)
|.|+ .|.. .+++.|+|+++++.+ +|.. .|..++++. + ..+++|++|+|++|.|++ || . +..
T Consensus 50 ~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip----~-l~~ 120 (571)
T 3cvr_A 50 VSLLKECLI--NQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LP----E-LPA 120 (571)
T ss_dssp HHHHHHHHH--TTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC----C-CCT
T ss_pred hhhcccccc--CCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cc----h-hhc
Confidence 8888 6753 578899999998877 6653 344444431 1 234677777777777776 66 4 443
Q ss_pred CCCCcEeeC
Q 048677 120 LKQLKILDL 128 (129)
Q Consensus 120 l~~L~~L~L 128 (129)
+|++|+|
T Consensus 121 --~L~~L~L 127 (571)
T 3cvr_A 121 --SLKHLDV 127 (571)
T ss_dssp --TCCEEEC
T ss_pred --CCCEEEC
Confidence 5555555
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.41 E-value=0.00011 Score=54.54 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=7.8
Q ss_pred cEEEEeccCCCccccc
Q 048677 61 RVMQLSLNNTKRLNHY 76 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i 76 (129)
.++.|+|++|.+.+.+
T Consensus 225 ~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 225 QPHSLDLSHNSLRATV 240 (310)
T ss_dssp CCSSEECTTSCCCCCC
T ss_pred CCCEEECCCCCCCccc
Confidence 3444555555554443
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.36 E-value=0.0002 Score=53.32 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=45.4
Q ss_pred CcEEEEeccCCCccccccCC---CcceecCc---------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 60 RRVMQLSLNNTKRLNHYYGT---SASLLNMS---------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~---~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
..++.++|++|.+.+.-... .|..++++ .+..+++|+.|+|++|.++ .|| ..+..+++|++|+
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~----~~~~~l~~L~~L~ 243 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE----KALRFSQNLEHFD 243 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EEC----TTCCCCTTCCEEE
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chh----hHhhcCCCCCEEE
Confidence 45677777777775431111 33444432 2567889999999999998 588 7888899999998
Q ss_pred CC
Q 048677 128 LG 129 (129)
Q Consensus 128 Ls 129 (129)
|+
T Consensus 244 l~ 245 (317)
T 3o53_A 244 LR 245 (317)
T ss_dssp CT
T ss_pred cc
Confidence 74
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.24 E-value=0.00017 Score=51.39 Aligned_cols=63 Identities=8% Similarity=0.146 Sum_probs=42.7
Q ss_pred CcEEEEeccCCC-ccccccCC-----CcceecCc-----------cccCCCCCcEEEccCcccccccCCCCccccCCCCC
Q 048677 60 RRVMQLSLNNTK-RLNHYYGT-----SASLLNMS-----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQ 122 (129)
Q Consensus 60 ~~v~~l~L~~~~-l~G~i~~~-----~l~~l~ls-----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~ 122 (129)
..++.|+++++. +....+.. .|..++++ .+..+++|++|++++|.+++ +| . +..+++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp----~-~~~l~~ 128 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP----D-LTKVYS 128 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CC----C-CTTCCB
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc----c-cccccc
Confidence 457777787776 54322211 33333332 25678999999999999997 88 5 788888
Q ss_pred Cc---EeeC
Q 048677 123 LK---ILDL 128 (129)
Q Consensus 123 L~---~L~L 128 (129)
|+ +|++
T Consensus 129 L~~L~~L~l 137 (239)
T 2xwt_C 129 TDIFFILEI 137 (239)
T ss_dssp CCSEEEEEE
T ss_pred cccccEEEC
Confidence 87 8876
No 109
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00022 Score=52.97 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=42.0
Q ss_pred CcEEEEeccCCCccc--cccCC-----CcceecCc--------cccCCC--CCcEEEccCcccccccCCC---CccccCC
Q 048677 60 RRVMQLSLNNTKRLN--HYYGT-----SASLLNMS--------LFHPFE--ELQRLDLLGNWFTGIYENR---AYDSFGS 119 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G--~i~~~-----~l~~l~ls--------~~~~l~--~L~~L~Ls~N~lsG~iP~~---~~~~l~~ 119 (129)
..++.|+|++|.+.+ .++.. .|..++|+ .+..+. +|+.|+|++|.+++.+|.. -..-+..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 468999999999987 44432 44455543 123333 7777777777777776621 0012456
Q ss_pred CCCCcEee
Q 048677 120 LKQLKILD 127 (129)
Q Consensus 120 l~~L~~L~ 127 (129)
+++|+.||
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 77777776
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.22 E-value=1.1e-05 Score=63.58 Aligned_cols=50 Identities=2% Similarity=-0.147 Sum_probs=20.8
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQL 123 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L 123 (129)
.++++++++++++ |.+|.+ ++++++|++|++++|.++|.+| .+++++++|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~---------i~~L~~L~~L~l~~n~~~~~~p----~~~~~l~~L 60 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVE---------AENVKSKTEYYNAWSEWERNAP----PGNGEQREM 60 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSC----TTSCCCHHH
T ss_pred ccchhhhcccCch-hhCChh---------HhcccchhhhhccCCcccccCC----cccccchhc
Confidence 4678889999998 888887 7778888888888888888888 777766653
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.15 E-value=1.8e-05 Score=55.17 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=44.2
Q ss_pred CcEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
..++.|++++|.+.+ +| . +..+++|++|++++|.++ .+| ..+..+++|++|+|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~---------~~~l~~L~~L~l~~n~l~-~l~----~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-S---------LSGMENLRILSLGRNLIK-KIE----NLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSEEECSEEEESC-CC-C---------HHHHTTCCEEEEEEEEEC-SCS----SHHHHHHHCSEEEEE
T ss_pred CCCCEEECCCCCCcc-cc-c---------cccCCCCCEEECCCCCcc-ccc----chhhcCCcCCEEECc
Confidence 467888888888866 44 4 777899999999999998 788 777788899999874
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.05 E-value=0.00029 Score=52.50 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=38.7
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc----------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcE
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS----------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKI 125 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls----------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~ 125 (129)
..++.++++++.+.+. +.- .|..++++ .+..+++|++|++++|.+++..| +..+++|++
T Consensus 265 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~ 337 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDS 337 (347)
T ss_dssp TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSE
T ss_pred CCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC------hhhhhccce
Confidence 4677888888877652 211 33333332 14567777777777777775433 566777777
Q ss_pred eeCC
Q 048677 126 LDLG 129 (129)
Q Consensus 126 L~Ls 129 (129)
|+++
T Consensus 338 L~l~ 341 (347)
T 4fmz_A 338 ADFA 341 (347)
T ss_dssp ESSS
T ss_pred eehh
Confidence 7764
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.04 E-value=0.001 Score=52.20 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=36.1
Q ss_pred CcEEEEeccCCCccccccCC--CcceecCc-----cccCC-CCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT--SASLLNMS-----LFHPF-EELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~--~l~~l~ls-----~~~~l-~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
..++.++++.+.+.+ +|.. .|..++++ .+..+ ++|++|++++|++++ || . ++.+++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp----~-~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP----E-LQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC----C-CTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc----c-cCCCCCCCEEECC
Confidence 346666676666665 4432 33444332 12222 467777777777775 66 3 6677777777663
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.03 E-value=0.0013 Score=48.89 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=9.3
Q ss_pred ccCCCCCcEEEccCccccc
Q 048677 89 FHPFEELQRLDLLGNWFTG 107 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG 107 (129)
+..+++|+.|++++|.+++
T Consensus 103 ~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC
T ss_pred hcCCCCCCEEECCCCCCCC
Confidence 3344455555555555543
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.02 E-value=2.6e-05 Score=54.32 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=33.6
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.+++++|.+. .+|.. +..+++|++|++++|.+++ +| .++.+++|++|+|+
T Consensus 71 ~L~~L~l~~n~l~-~l~~~---------~~~~~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENL---------DAVADTLEELWISYNQIAS-LS-----GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSH---------HHHHHHCSEEEEEEEECCC-HH-----HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCcc-cccch---------hhcCCcCCEEECcCCcCCc-CC-----ccccCCCCCEEECC
Confidence 4566666666664 33332 4445677778888777775 44 46677777777663
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.01 E-value=0.00048 Score=51.35 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=50.9
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc--------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS--------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
..++.++++++.+.+. +.- .|..++++ .+..+++|+.|++++|.+++..| ..++.+++|++|+
T Consensus 243 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLF 317 (347)
T ss_dssp TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEE
T ss_pred CCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEE
Confidence 5688999999988652 211 44555443 35678999999999999999888 8899999999999
Q ss_pred CC
Q 048677 128 LG 129 (129)
Q Consensus 128 Ls 129 (129)
|+
T Consensus 318 L~ 319 (347)
T 4fmz_A 318 LS 319 (347)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.01 E-value=0.00038 Score=51.56 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=54.4
Q ss_pred CCCceEeCCCCCcEEEEeccCCCccccccC----CCcceecCc---------cccCCCCCcEEEccCcccccc-cCCCCc
Q 048677 49 DWEGVKCNATTRRVMQLSLNNTKRLNHYYG----TSASLLNMS---------LFHPFEELQRLDLLGNWFTGI-YENRAY 114 (129)
Q Consensus 49 ~w~Gv~C~~~~~~v~~l~L~~~~l~G~i~~----~~l~~l~ls---------~~~~l~~L~~L~Ls~N~lsG~-iP~~~~ 114 (129)
.|.++.|+. ..++.++++++.+....-. ..+..++++ .+..+++|+.|++++|.+++. +|
T Consensus 38 ~W~~~~~~~--~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~---- 111 (336)
T 2ast_B 38 RWYRLASDE--SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH---- 111 (336)
T ss_dssp HHHHHHTCS--TTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH----
T ss_pred HHHHHhcCc--hhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH----
Confidence 698888864 4578899998877532111 123333332 244679999999999999987 88
Q ss_pred cccCCCCCCcEeeCC
Q 048677 115 DSFGSLKQLKILDLG 129 (129)
Q Consensus 115 ~~l~~l~~L~~L~Ls 129 (129)
..+..+++|++|+|+
T Consensus 112 ~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 112 GILSQCSKLQNLSLE 126 (336)
T ss_dssp HHHTTBCCCSEEECT
T ss_pred HHHhhCCCCCEEeCc
Confidence 888999999999985
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.97 E-value=0.0013 Score=54.03 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=43.7
Q ss_pred cEEEEeccCCCccccccCC--CcceecCcc--c----cCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGT--SASLLNMSL--F----HPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~--~l~~l~ls~--~----~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.|+|++|.+.+ +|.. .|..++++. + ..+++|+.|+|++|.++ .|| ..+..+++|++|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp----~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLP----ESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCC----GGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCC----HHHhhccccCEEEec
Confidence 45666777776655 3322 344444431 1 13568999999999999 888 889999999999885
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.95 E-value=0.0011 Score=48.27 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=31.1
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.++.|+|++|.+.+.. .+..+++|++|++++|++++ +| . +.. ++|++|+|+
T Consensus 64 ~L~~L~L~~N~i~~~~-----------~l~~l~~L~~L~L~~N~l~~-l~----~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 64 NLKELHLSHNQISDLS-----------PLKDLTKLEELSVNRNRLKN-LN----G-IPS-ACLSRLFLD 114 (263)
T ss_dssp TCCEEECCSSCCCCCG-----------GGTTCSSCCEEECCSSCCSC-CT----T-CCC-SSCCEEECC
T ss_pred CCCEEECCCCccCCCh-----------hhccCCCCCEEECCCCccCC-cC----c-ccc-CcccEEEcc
Confidence 4555666665553321 15567788888888888775 55 2 222 777777764
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.91 E-value=0.0011 Score=48.22 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=34.9
Q ss_pred CcEEEEeccCCCccccccC---CCcceecCc--------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 60 RRVMQLSLNNTKRLNHYYG---TSASLLNMS--------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~---~~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..++.++|++|.+.+. +. ..|..++++ .+..+++|+.|++++|++++ +| .+..+++|++|+|
T Consensus 85 ~~L~~L~L~~N~l~~l-~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-----~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNL-NGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IV-----MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSCC-TTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CG-----GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCCc-CccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-Ch-----HHccCCCCCEEEC
Confidence 4566777777776541 21 123333332 24556677777777777664 23 3556666666665
Q ss_pred C
Q 048677 129 G 129 (129)
Q Consensus 129 s 129 (129)
+
T Consensus 158 ~ 158 (263)
T 1xeu_A 158 H 158 (263)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.91 E-value=0.0004 Score=52.78 Aligned_cols=35 Identities=34% Similarity=0.350 Sum_probs=20.9
Q ss_pred cCCCCCcEEEccCcccc----cccCCCCccccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFT----GIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~ls----G~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++|+.|+|++|.++ +.+| ..+..+++|++|+|
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~----~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALA----IALKSWPNLRELGL 251 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHH----HHGGGCTTCCEEEC
T ss_pred hcCCCccEEECcCCCCCcHHHHHHH----HHHccCCCcCEEEC
Confidence 34556666666666665 5555 55556666666655
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.88 E-value=0.0015 Score=53.43 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=9.4
Q ss_pred CcEEEEeccCCCcccc
Q 048677 60 RRVMQLSLNNTKRLNH 75 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~ 75 (129)
..++.|+|+++.+.+.
T Consensus 65 ~~L~~L~Ls~N~l~~~ 80 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDI 80 (605)
T ss_dssp TTCCEEECTTSCCCCC
T ss_pred CCCCEEEeeCCCCCCC
Confidence 3466666666666543
No 123
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.88 E-value=0.0012 Score=48.73 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=31.1
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc--------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS--------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
..++.|++++|.+.+. +.- .|..++++ .+..+++|+.|++++|.+++ ++ + +..+++|++|+
T Consensus 112 ~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~----~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV----P-LAGLTKLQNLY 184 (291)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG----G-GTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-ch----h-hcCCCccCEEE
Confidence 4466677777666542 111 23333332 24455566666666666654 23 2 44555555555
Q ss_pred C
Q 048677 128 L 128 (129)
Q Consensus 128 L 128 (129)
|
T Consensus 185 L 185 (291)
T 1h6t_A 185 L 185 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.87 E-value=0.0016 Score=50.82 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=24.2
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+..+++|+.|++++|++++.+| +..+++|+.|+++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP------LANLTRITQLGLN 383 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG------GTTCTTCCEEECC
T ss_pred hccCCCCCEEeCCCCccCccch------hhcCCCCCEEecc
Confidence 4566777777777777776554 5667777777763
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.84 E-value=0.001 Score=52.31 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=35.8
Q ss_pred EEEEeccCCCccccccCC--CcceecCccccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 62 VMQLSLNNTKRLNHYYGT--SASLLNMSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 62 v~~l~L~~~~l~G~i~~~--~l~~l~ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++.++++++.+.|.+|.. .+..++ +..+++|+.|++++|+|+| +| ++.+++|++|+++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~---l~~~~~L~~L~L~~N~l~~-l~------l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTE-LD------VSHNTKLKSLSCV 347 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCCEEECTTCCCSC-CC------CTTCTTCSEEECC
T ss_pred CCEEECCCCcccceeccCCCcceEec---hhhcccCCEEECCCCcccc-cc------cccCCcCcEEECC
Confidence 444444444444444432 222222 4556788888888888887 44 6778888888874
No 126
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.82 E-value=0.0018 Score=47.70 Aligned_cols=64 Identities=25% Similarity=0.233 Sum_probs=42.1
Q ss_pred CcEEEEeccCCCccccccCC---CcceecCc--------cccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT---SASLLNMS--------LFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~---~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..++.|+|+++.+.+..+-. .|..++++ .+..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~~-----~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-Ch-----hhcCCCCCCEEEc
Confidence 46788888888886643211 33344332 25667788888888888775 33 5777888888877
Q ss_pred C
Q 048677 129 G 129 (129)
Q Consensus 129 s 129 (129)
+
T Consensus 142 ~ 142 (291)
T 1h6t_A 142 G 142 (291)
T ss_dssp C
T ss_pred c
Confidence 4
No 127
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.82 E-value=0.0022 Score=47.52 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.4
Q ss_pred cEEEEeccCCCcc
Q 048677 61 RVMQLSLNNTKRL 73 (129)
Q Consensus 61 ~v~~l~L~~~~l~ 73 (129)
.++.|+|+++.+.
T Consensus 86 ~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 86 KITELELSGNPLK 98 (308)
T ss_dssp SCCEEECCSCCCS
T ss_pred CCCEEEccCCcCC
Confidence 3455555555443
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.79 E-value=0.00041 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCCCcEEEccCccccc----ccCCCCcccc-CCCCCCcEeeCC
Q 048677 92 FEELQRLDLLGNWFTG----IYENRAYDSF-GSLKQLKILDLG 129 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG----~iP~~~~~~l-~~l~~L~~L~Ls 129 (129)
+++|+.|+|++|.+++ .+| ..+ .++++|++|+|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~----~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLK----TVIDEKMPDLLFLELN 311 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHH----HHHHHHCTTCCEEECT
T ss_pred CCCeEEEECcCCcCCHHHHHHHH----HHHHhcCCCceEEEcc
Confidence 5666666666666666 466 555 456666666653
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.71 E-value=0.0021 Score=50.48 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.3
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
++.+++|++|++++|.+++ +| ++.+++|++|+++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~~------~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-LD------VTPLTKLTYLNCD 114 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC------CTTCTTCCEEECC
T ss_pred cccCCCCCEEECcCCCCce-ee------cCCCCcCCEEECC
Confidence 5678889999999998886 33 6788889998874
No 130
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.66 E-value=0.0018 Score=52.91 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=23.7
Q ss_pred CcEEEEeccCCCccccccCC----CcceecCc--------cccCCCCCcEEEccCccccc
Q 048677 60 RRVMQLSLNNTKRLNHYYGT----SASLLNMS--------LFHPFEELQRLDLLGNWFTG 107 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~----~l~~l~ls--------~~~~l~~L~~L~Ls~N~lsG 107 (129)
..+..|+|++|.+.+. +.- .|..++++ .+..+++|+.|+|++|.+++
T Consensus 109 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC
Confidence 3466677777666542 211 23333332 24455556666666665554
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.55 E-value=0.00055 Score=51.80 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCCcEEEccCcccccccCCCCccccCC----C-CCCcEeeCC
Q 048677 93 EELQRLDLLGNWFTGIYENRAYDSFGS----L-KQLKILDLG 129 (129)
Q Consensus 93 ~~L~~L~Ls~N~lsG~iP~~~~~~l~~----l-~~L~~L~Ls 129 (129)
++|++|+|++|.+++..+ ..++. + ++|++|+|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSS----DELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp TTCCEEECCSSCGGGSCH----HHHHHHHHTSCTTCCEEECC
T ss_pred CCccEEECcCCcCChHHH----HHHHHHHHhCCCCccEEECc
Confidence 789999999999888776 54443 3 789999875
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.49 E-value=0.0044 Score=50.39 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=7.8
Q ss_pred cEEEEeccCCCccc
Q 048677 61 RVMQLSLNNTKRLN 74 (129)
Q Consensus 61 ~v~~l~L~~~~l~G 74 (129)
.++.|+|++|.+.+
T Consensus 101 ~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 101 SLEYLDACDNRLST 114 (571)
T ss_dssp TCCEEECCSSCCSC
T ss_pred CCCEEEccCCCCCC
Confidence 45555666655554
No 133
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.36 E-value=0.005 Score=47.96 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=8.2
Q ss_pred CCCCCcEEEccCccccc
Q 048677 91 PFEELQRLDLLGNWFTG 107 (129)
Q Consensus 91 ~l~~L~~L~Ls~N~lsG 107 (129)
.+++|+.|++++|.+++
T Consensus 307 ~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISD 323 (466)
T ss_dssp GCTTCSEEECCSSCCSC
T ss_pred CCCCCCEEECcCCcCCC
Confidence 34444555555554444
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.34 E-value=0.00054 Score=51.85 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=42.4
Q ss_pred cEEEEeccCCCccccccC----------CCcceecCc--------------cccCC-CCCcEEEccCcccccccCCCCcc
Q 048677 61 RVMQLSLNNTKRLNHYYG----------TSASLLNMS--------------LFHPF-EELQRLDLLGNWFTGIYENRAYD 115 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~----------~~l~~l~ls--------------~~~~l-~~L~~L~Ls~N~lsG~iP~~~~~ 115 (129)
.++.|+|++|.+.+..+. ..|..++++ .+..+ ++|++|+|++|.+++..+ .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~ 127 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS----S 127 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----H
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH----H
Confidence 577777777777653221 134444443 13334 799999999999987665 5
Q ss_pred ccC----C-CCCCcEeeCC
Q 048677 116 SFG----S-LKQLKILDLG 129 (129)
Q Consensus 116 ~l~----~-l~~L~~L~Ls 129 (129)
.++ . .++|++|+|+
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp HHHHHHTTSCTTCCEEECT
T ss_pred HHHHHHHhCCCceeEEEcc
Confidence 543 3 3689999985
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.85 E-value=0.0012 Score=50.83 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=43.7
Q ss_pred cEEEEeccCCCcccc----ccC-----CCcceecCcc----------cc-----CCCCCcEEEccCccccc----ccCCC
Q 048677 61 RVMQLSLNNTKRLNH----YYG-----TSASLLNMSL----------FH-----PFEELQRLDLLGNWFTG----IYENR 112 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~----i~~-----~~l~~l~ls~----------~~-----~l~~L~~L~Ls~N~lsG----~iP~~ 112 (129)
.++.++++++.+.+. ++. ..|..++++. +. ..++|++|++++|.+++ .+|
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-- 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-- 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH--
Confidence 577777777776543 111 1344444431 11 25689999999999886 788
Q ss_pred CccccCCCCCCcEeeCC
Q 048677 113 AYDSFGSLKQLKILDLG 129 (129)
Q Consensus 113 ~~~~l~~l~~L~~L~Ls 129 (129)
..+..+++|++|+|+
T Consensus 392 --~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 392 --ATLLANHSLRELDLS 406 (461)
T ss_dssp --HHHHHCCCCCEEECC
T ss_pred --HHHHhCCCccEEECC
Confidence 788888889988874
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.52 E-value=0.011 Score=44.37 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=41.5
Q ss_pred CcEEEEeccCCCccccccCC------Ccc-eec----------CccccCCCCCcEEEccCcccccccCCCCccccCCCCC
Q 048677 60 RRVMQLSLNNTKRLNHYYGT------SAS-LLN----------MSLFHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQ 122 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~~------~l~-~l~----------ls~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~ 122 (129)
..++.|+|++|.+.+.++.. .+. .+. ...+..+++|++|++++|.++...+ ..+....+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~ 129 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQ 129 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC----CTTCCBSS
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc----hhhcccch
Confidence 56899999999987777654 111 111 1135677888888888888875544 44445555
Q ss_pred CcEeeC
Q 048677 123 LKILDL 128 (129)
Q Consensus 123 L~~L~L 128 (129)
+..|++
T Consensus 130 l~~l~l 135 (350)
T 4ay9_X 130 KVLLDI 135 (350)
T ss_dssp CEEEEE
T ss_pred hhhhhh
Confidence 555543
No 137
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.42 E-value=0.033 Score=36.48 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCcEEEccCcccccccCCCCccccCCCCCCcEeeCC
Q 048677 94 ELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 94 ~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+|+.|+|++|+|+ .||. ..+..+++|++|+|+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~---~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPP---GLLDALPALRTAHLG 63 (130)
T ss_dssp TCSEEECTTSCCS-SCCT---TTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCC-ccCh---hhhhhccccCEEEec
Confidence 5788888888887 4551 445677788887763
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.29 E-value=0.0045 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=10.5
Q ss_pred ccCCCCCcEEEccCcccccc
Q 048677 89 FHPFEELQRLDLLGNWFTGI 108 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~ 108 (129)
+..+++|++|++++|.++..
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHH
T ss_pred HccCCceeEEECCCCcCchH
Confidence 34455555555555555543
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.01 E-value=0.022 Score=46.67 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=47.9
Q ss_pred CCCCCCCCCceE--------eCCCCCcEEEEeccCCCccccccCC---CcceecCc-----cc-cCCCCCcEEEccCccc
Q 048677 43 PSDCCDDWEGVK--------CNATTRRVMQLSLNNTKRLNHYYGT---SASLLNMS-----LF-HPFEELQRLDLLGNWF 105 (129)
Q Consensus 43 ~~~~C~~w~Gv~--------C~~~~~~v~~l~L~~~~l~G~i~~~---~l~~l~ls-----~~-~~l~~L~~L~Ls~N~l 105 (129)
..++| .|.|.. |.. ..++.|+++++++. .+|.. .|..++++ .+ ..+++|++|+|++|++
T Consensus 18 ~~~~~-~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l 93 (622)
T 3g06_A 18 AAPAE-ESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQL 93 (622)
T ss_dssp TCCGG-GHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCC
T ss_pred cCCcc-hhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcC
Confidence 35678 886642 322 34788889888886 55543 34444443 11 2467889999999988
Q ss_pred ccccCCCCccccCCCCCCcEeeCC
Q 048677 106 TGIYENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 106 sG~iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+ .|| . .+++|++|+|+
T Consensus 94 ~-~lp----~---~l~~L~~L~Ls 109 (622)
T 3g06_A 94 T-SLP----V---LPPGLLELSIF 109 (622)
T ss_dssp S-CCC----C---CCTTCCEEEEC
T ss_pred C-cCC----C---CCCCCCEEECc
Confidence 7 577 5 56677777653
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.97 E-value=0.0034 Score=49.84 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=24.1
Q ss_pred cCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
..+++|+.|++++|.|++.... ..+..+++|++|+|
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIA---AAVTKLPSLRYLWV 520 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHH---HHHHHCSSCCEEEE
T ss_pred hcCcccCeeeccCCCCcHHHHH---HHHHhcCccCeeEC
Confidence 4567788888888887765330 34456777777776
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.37 E-value=0.01 Score=45.46 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=7.2
Q ss_pred cEEEEeccCCCcc
Q 048677 61 RVMQLSLNNTKRL 73 (129)
Q Consensus 61 ~v~~l~L~~~~l~ 73 (129)
+++.|+|++|.+.
T Consensus 127 ~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 127 RARKLGLQLNSLG 139 (372)
T ss_dssp TEEEEECCSSCCC
T ss_pred hccHhhcCCCCCC
Confidence 3556666666553
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.26 E-value=0.011 Score=45.35 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=24.7
Q ss_pred ccCCCCCcEEEccCcccccc----cCCCCccccCCCCCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNWFTGI----YENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~----iP~~~~~~l~~l~~L~~L~Ls 129 (129)
+...++|+.|+|++|.++.. ++ ..+...++|++|||+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~----~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALA----RAAREHPSLELLHLY 247 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHH----HHHHHCSSCCEEECT
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHH----HHHHhCCCCCEEecc
Confidence 34456788888888887642 33 445566778888774
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.79 E-value=0.0092 Score=47.34 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=13.5
Q ss_pred CCCCcEEEccCcccccccCCCCccccCCCCCCcEee
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILD 127 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~ 127 (129)
+++|+.|++++|.+.+ +| ..+..+++|+.|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~----~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LV----GFFKAAANLEEFC 249 (592)
T ss_dssp CTTCCEEECSSCBGGG-GH----HHHHHCTTCCEEE
T ss_pred CCCCcEEeccCccHHH-HH----HHHhhhhHHHhhc
Confidence 3444444444444443 33 3444444444444
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.12 E-value=0.029 Score=38.53 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=7.9
Q ss_pred cEEEEeccCCCcc
Q 048677 61 RVMQLSLNNTKRL 73 (129)
Q Consensus 61 ~v~~l~L~~~~l~ 73 (129)
.++.|+|++|.+.
T Consensus 66 ~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 66 YVKKFSIVGTRSN 78 (185)
T ss_dssp SCCEEECTTSCCC
T ss_pred CcCEEECcCCCCC
Confidence 4566666666653
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.95 E-value=0.011 Score=46.89 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred cCCCCCcEEEccCcccccccCCCCccc-cCCCCCCcEeeCC
Q 048677 90 HPFEELQRLDLLGNWFTGIYENRAYDS-FGSLKQLKILDLG 129 (129)
Q Consensus 90 ~~l~~L~~L~Ls~N~lsG~iP~~~~~~-l~~l~~L~~L~Ls 129 (129)
..+++|+.|+|++|.+++..+ .. +..+++|++|+|+
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKAL----LANASKLETMRSLWMS 514 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHH----HHTGGGGGGSSEEEEE
T ss_pred hcCCCcCEEECcCCCCcHHHH----HHHHHhCCCCCEEeee
Confidence 447889999999998866554 43 3458888888863
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.35 E-value=0.1 Score=34.03 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=26.6
Q ss_pred cEEEEeccCCCccccccCCCcceecCccccCCCCCcEEEccCcccc
Q 048677 61 RVMQLSLNNTKRLNHYYGTSASLLNMSLFHPFEELQRLDLLGNWFT 106 (129)
Q Consensus 61 ~v~~l~L~~~~l~G~i~~~~l~~l~ls~~~~l~~L~~L~Ls~N~ls 106 (129)
.++.|+|++|.|...-+.. |..+++|+.|+|++|.|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~---------f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL---------LDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT---------GGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhh---------hhhccccCEEEecCCCee
Confidence 4677788888775422222 677889999999999774
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=91.99 E-value=0.022 Score=43.61 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCCCCcEEEccCcccccc----cCCCCccccCCCCCCcEeeCC
Q 048677 91 PFEELQRLDLLGNWFTGI----YENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 91 ~l~~L~~L~Ls~N~lsG~----iP~~~~~~l~~l~~L~~L~Ls 129 (129)
.+++|++|+|+.|.++.. |+ ..+..+++|+.|+|+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~----~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLL----DHVDKIKHLKFINMK 315 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHH----TTHHHHTTCSEEECC
T ss_pred cCCCCCEEECCCCCCChHHHHHHH----hhcccCCcceEEECC
Confidence 467888888888888763 44 445567888888874
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=91.12 E-value=0.027 Score=44.54 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=43.9
Q ss_pred CcEEEEeccCCCccccccC------CCcceecCc------------cccCCCCCcEEEccCcccccccCCCCcccc----
Q 048677 60 RRVMQLSLNNTKRLNHYYG------TSASLLNMS------------LFHPFEELQRLDLLGNWFTGIYENRAYDSF---- 117 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~i~~------~~l~~l~ls------------~~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l---- 117 (129)
..++.|+|+++.+.+..+. ..|..++++ .+..+++|++|+|++|.+++..+ ..+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~----~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG----HWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG----GGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch----HHHHHHh
Confidence 4678888888877653221 134444443 12368899999999999887654 333
Q ss_pred CCCCCCcEeeCC
Q 048677 118 GSLKQLKILDLG 129 (129)
Q Consensus 118 ~~l~~L~~L~Ls 129 (129)
..+++|++|+|+
T Consensus 181 ~~~~~L~~L~l~ 192 (594)
T 2p1m_B 181 DTYTSLVSLNIS 192 (594)
T ss_dssp TTCCCCCEEECT
T ss_pred hcCCcCcEEEec
Confidence 367799999874
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.98 E-value=0.074 Score=36.44 Aligned_cols=57 Identities=7% Similarity=0.016 Sum_probs=39.3
Q ss_pred CcEEEEeccCCCcccc----ccCCCcceecCccccCCCCCcEEEc--cCcccccc----cCCCCccccCCCCCCcEeeCC
Q 048677 60 RRVMQLSLNNTKRLNH----YYGTSASLLNMSLFHPFEELQRLDL--LGNWFTGI----YENRAYDSFGSLKQLKILDLG 129 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~----i~~~~l~~l~ls~~~~l~~L~~L~L--s~N~lsG~----iP~~~~~~l~~l~~L~~L~Ls 129 (129)
..++.|+|+.|.+... +... +...++|+.|+| ++|.++.. |- ..+...+.|++|+|+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~---------L~~n~~L~~L~L~~~~N~i~~~g~~~l~----~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEA---------LQSNTSLIELRIDNQSQPLGNNVEMEIA----NMLEKNTTLLKFGYH 159 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHG---------GGGCSSCCEEECCCCSSCCCHHHHHHHH----HHHHHCSSCCEEECC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHH---------HHhCCCceEEEecCCCCCCCHHHHHHHH----HHHHhCCCcCEEecc
Confidence 4588999999988542 1221 455678999999 78888754 33 344556888888874
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=90.42 E-value=0.1 Score=36.18 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=39.0
Q ss_pred CcEEEEeccCCCcccc----ccCC-CcceecCc-----------cccCC----CCCcEEEccCcc-cccccCCCCccccC
Q 048677 60 RRVMQLSLNNTKRLNH----YYGT-SASLLNMS-----------LFHPF----EELQRLDLLGNW-FTGIYENRAYDSFG 118 (129)
Q Consensus 60 ~~v~~l~L~~~~l~G~----i~~~-~l~~l~ls-----------~~~~l----~~L~~L~Ls~N~-lsG~iP~~~~~~l~ 118 (129)
.++++|++++..++.. +..- .|..++++ .+..+ ++|+.|+|+++. ++-.== ..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl----~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI----IALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH----HHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH----HHHh
Confidence 4699999998876421 1111 44444443 13332 368888888763 553222 4567
Q ss_pred CCCCCcEeeCC
Q 048677 119 SLKQLKILDLG 129 (129)
Q Consensus 119 ~l~~L~~L~Ls 129 (129)
++++|++|+|+
T Consensus 137 ~~~~L~~L~L~ 147 (176)
T 3e4g_A 137 HFRNLKYLFLS 147 (176)
T ss_dssp GCTTCCEEEEE
T ss_pred cCCCCCEEECC
Confidence 78888888763
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=88.81 E-value=0.6 Score=34.37 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=9.2
Q ss_pred cEEEEeccCCCcc
Q 048677 61 RVMQLSLNNTKRL 73 (129)
Q Consensus 61 ~v~~l~L~~~~l~ 73 (129)
.++.|+|+.+++.
T Consensus 227 ~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 227 NLVSLDISKTNAT 239 (329)
T ss_dssp TCCEEECTTBCCC
T ss_pred CCeEEECCCCCcc
Confidence 5777888877664
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=82.77 E-value=1.5 Score=32.19 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=28.5
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..+++|+.|+++.|.++ .|+. ..+..+++|+.|+.
T Consensus 293 F~~c~~L~~l~l~~n~i~-~I~~---~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKIT-TLGD---ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTEEEEEECSSCCC-EECT---TTTCTTCCCCEEEC
T ss_pred hhCCccCCEEEeCCCccC-ccch---hhhcCCcchhhhcc
Confidence 667889999999999887 4551 57888999998864
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=79.05 E-value=0.59 Score=35.63 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=18.0
Q ss_pred CCCCcEEEccCcccccccCCCCcccc---CCCCCCcEeeCC
Q 048677 92 FEELQRLDLLGNWFTGIYENRAYDSF---GSLKQLKILDLG 129 (129)
Q Consensus 92 l~~L~~L~Ls~N~lsG~iP~~~~~~l---~~l~~L~~L~Ls 129 (129)
+++|++|+|.+|.+....+ ..+ ..+++|++|+|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~----~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVV----EMFLESDILPQLETMDIS 287 (362)
T ss_dssp CTTCCEEEEESCTTHHHHH----HHHHHCSSGGGCSEEECC
T ss_pred CCCcCEEeCCCCCCchHHH----HHHHhCccCCCCCEEECC
Confidence 4566666666665554333 222 245666666653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=76.08 E-value=1.3 Score=30.61 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=23.4
Q ss_pred ccCCCCCcEEEccCcc-cccccCCCCccccCCC----CCCcEeeCC
Q 048677 89 FHPFEELQRLDLLGNW-FTGIYENRAYDSFGSL----KQLKILDLG 129 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~-lsG~iP~~~~~~l~~l----~~L~~L~Ls 129 (129)
+..+++|+.|+|+++. ++-.-= ..|+.+ ++|++|+|+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEEE
T ss_pred hcCCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEcC
Confidence 5677888888888874 553322 345553 367887763
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=68.83 E-value=8.8 Score=29.29 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=13.3
Q ss_pred ccCCCCCcEEEccCcccc
Q 048677 89 FHPFEELQRLDLLGNWFT 106 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~ls 106 (129)
|..+++|+.++|+.|.++
T Consensus 176 F~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp TTTCTTCCEEECTTSCCS
T ss_pred hhCcccCCeeecCCCcce
Confidence 566778888888877655
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=62.92 E-value=3.4 Score=28.90 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=7.0
Q ss_pred cEEEEeccCCCcc
Q 048677 61 RVMQLSLNNTKRL 73 (129)
Q Consensus 61 ~v~~l~L~~~~l~ 73 (129)
.++.|+|+++.+.
T Consensus 71 ~L~~L~L~~n~ig 83 (197)
T 1pgv_A 71 HIEKFSLANTAIS 83 (197)
T ss_dssp CCCEEECTTSCCB
T ss_pred CcCEEEccCCCCC
Confidence 4555555555553
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=40.71 E-value=26 Score=26.56 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=21.6
Q ss_pred ccCCCCCcEEEccCcccc----cccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFT----GIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~ls----G~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..+++|+.+++..|.+. ..|+. ..+..|++|+.++|
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~---~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHP---YCLEGCPKLARFEI 307 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECT---TTTTTCTTCCEECC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECH---HHhhCCccCCeEEe
Confidence 556777787777776654 12441 34455666666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=29.56 E-value=77 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=16.9
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..+++|+.++|..+ ++ .|+. ..+..|++|+.+.+
T Consensus 306 F~~c~~L~~i~lp~~-l~-~I~~---~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LK-TIQV---YAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCTT-CC-EECT---TTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCcc-cc-EEHH---HHhhCCCCCCEEEE
Confidence 445566666666543 22 3431 23445555555543
No 159
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=29.18 E-value=21 Score=15.69 Aligned_cols=11 Identities=27% Similarity=1.138 Sum_probs=7.5
Q ss_pred CCCCCCCCCceE
Q 048677 43 PSDCCDDWEGVK 54 (129)
Q Consensus 43 ~~~~C~~w~Gv~ 54 (129)
....| +|.|..
T Consensus 4 adgac-swrgle 14 (23)
T 3ox7_P 4 ADGAC-SWRGLE 14 (26)
T ss_pred cCccc-ccccch
Confidence 34578 898854
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=27.36 E-value=63 Score=23.60 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=26.1
Q ss_pred ccCCCCCcEEEccCcccccccCCCCccccCCCCCCcEeeC
Q 048677 89 FHPFEELQRLDLLGNWFTGIYENRAYDSFGSLKQLKILDL 128 (129)
Q Consensus 89 ~~~l~~L~~L~Ls~N~lsG~iP~~~~~~l~~l~~L~~L~L 128 (129)
|..+++|+.+++.++.++ .|+. ..+..+.+|+.++|
T Consensus 282 F~~c~~L~~i~l~~~~i~-~I~~---~aF~~c~~L~~i~l 317 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE-TLEP---RVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECCTTCC-EECT---TTTTTCTTCCEEEC
T ss_pred cccccccccccccccccc-eehh---hhhcCCCCCCEEEc
Confidence 556788888888777665 5652 45678888888876
Done!