BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048680
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 70 PEAFSWSYKRRYKSGYVWQDLLNDDLIT--PISDNEYVLKGSESL 112
PE F+ RRY+ WQDL D++T SD+ V+ G L
Sbjct: 11 PEEFA----RRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQL 51
>pdb|2UWJ|G Chain G, Structure Of The Heterotrimeric Complex Which Regulates
Type Iii Secretion Needle Formation
Length = 115
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 26 IVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSW 75
I +L RLGQ + LIR+ L+ G Y + LA G P W
Sbjct: 28 IAEWLERLGQDEAARLIRISSLANQGRY----QEALAFAHGNPWPALEPW 73
>pdb|1Z4V|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana (Soaked With Dana, Ph 7.0)
pdb|1Z4W|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana (Soaked With Dana, Ph8.0)
pdb|1Z4X|A Chain A, Parainfluenza Virus 5 (sv5) Hemagglutinin-neuraminidase
(hn) With Ligand Sialyllactose (soaked With
Sialyllactose, Ph8.0)
pdb|1Z4Y|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) (Ph 8.0)
pdb|1Z4Z|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana(Soaked With Sialic Acid, Ph7.0))
pdb|1Z50|A Chain A, Parainfluenza Virus 5 (sv5) Hemagglutinin-neuraminidase
(hn) With Ligand Dana (soaked With Sialic Acid, Ph 8.0)
Length = 532
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 74 SWSYKRRYKSGYVW----QDLLNDDLITPISDNEYVLKGSE 110
SW R +SG + QDL N+ L+ P S N+ VL G+E
Sbjct: 318 SWFGNRMIQSGILACPLRQDLTNECLVLPFS-NDQVLMGAE 357
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 67 KDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDNEYVL 106
+++P+ S + K GYV QD+ N D+I + +E L
Sbjct: 529 QNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSL 568
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 67 KDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDNEYVL 106
+++P+ S + K GYV QD+ N D+I + +E L
Sbjct: 527 QNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSL 566
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 67 KDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDNEYVL 106
+++P+ S + K GYV QD+ N D+I + +E L
Sbjct: 529 QNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSL 568
>pdb|2WHM|A Chain A, Cellvibrio Japonicus Man26a E121a And E320g Double Mutant
In Complex With Mannobiose
Length = 385
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 202 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 253
>pdb|1R7O|A Chain A, Crystal Structure Of Apo-mannanase 26a From Psudomonas
Cellulosa
Length = 395
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 212 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 263
>pdb|1ODZ|A Chain A, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
pdb|1ODZ|B Chain B, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
Length = 386
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 203 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 254
>pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 383
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 202 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 253
>pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 376
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 198 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 249
>pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From Pseudomonas
Cellulosa
Length = 385
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 YLRDVK---RWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDN 102
YLRDVK +L + + +Y RY G W D+L D P++DN
Sbjct: 202 YLRDVKGVRNFLYAYSPNNFWDVTEANYLERY-PGDEWVDVLGFDTYGPVADN 253
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 43 RVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLI 96
+ HL V+ RDV R L + + + F W Y RY +++L+ +I
Sbjct: 511 KFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVI 564
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 43 RVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLI 96
+ HL V+ RDV R L + + + F W Y RY +++L+ +I
Sbjct: 511 KFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVI 564
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 68 DMPEAFSWSYKRRYKSGYVWQDL 90
D P W Y ++K+G VW+D+
Sbjct: 432 DGPGGNKWMYVGKHKAGQVWRDI 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,509,925
Number of Sequences: 62578
Number of extensions: 140063
Number of successful extensions: 425
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 18
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)