BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048680
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5EX72|RL10_DICNV 50S ribosomal protein L10 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rplJ PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 40 HLIRVHHLSR-NGVYLRDVK-----RWLAEVRGKDMPE--------AFSWSY----KRRY 81
HL ++H +R NGVYLR VK R LA+ K E AFS Y R +
Sbjct: 37 HLTQLHARARENGVYLRVVKNTLARRALADTEFKAAEEKLVGPLVLAFSMEYPGAAARLW 96
Query: 82 KSGYVWQDLLNDDLITPISDNEYVLKGSE 110
+ + D ++ D++ +S + VL GSE
Sbjct: 97 RDFFKENDKISTDIVKFVSISGEVLAGSE 125
>sp|O14338|YB33_SCHPO Uncharacterized serine-rich protein C2F12.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC2F12.03c PE=1 SV=1
Length = 891
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 37 DHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRRY 81
DH V + R+ +Y+ DV R+LAEVR ++P+ + RRY
Sbjct: 288 DHKPQYLVLCVYRSLIYIGDVHRYLAEVRSPNVPD---YQVSRRY 329
>sp|B7ND41|GLNE_ECOLU Glutamate-ammonia-ligase adenylyltransferase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=glnE PE=3 SV=1
Length = 946
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 52 VYLRDVKRWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPI 99
V++ +V+R E+ G D E S +++ +WQD L +D TP+
Sbjct: 423 VHMTNVRRVFNELIGDDESETQEESLSEQWRE--LWQDALQEDDTTPV 468
>sp|P78753|ASNS_SCHPO Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=asn1 PE=1 SV=3
Length = 557
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 69 MPEAFSWSYKRRYKSG--YVWQDLLNDDLITPISDNEYVLKGSE 110
+P+ W K ++ G Y W D L D ISD+E+ L E
Sbjct: 456 LPQDILWRQKEQFSDGVGYSWIDALKDTAELCISDDEFALPRRE 499
>sp|A2QHG9|DENR_ASPNC Translation machinery-associated protein 22 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=tma22 PE=3 SV=1
Length = 197
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 44 VHHLSRNGVYLRDVKRWLAEVRGKDMPEA 72
++ G DVK WL EV GK++PEA
Sbjct: 152 TEEITVQGDVSDDVKEWLLEVYGKEIPEA 180
>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=tma22 PE=3 SV=1
Length = 194
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 44 VHHLSRNGVYLRDVKRWLAEVRGKDMPEA 72
V ++ G DV+ WL EV GK++PE+
Sbjct: 152 VEEITVQGDVSEDVQEWLLEVYGKELPES 180
>sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2
Length = 4450
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 30 LSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEV-RGKDMPEAFSWSYKRRYKSGYVWQ 88
L +L H L+ +HH+ +GV ++ + + +A++ +GK++ E +YK VWQ
Sbjct: 2206 LVKLASDRHLFLMDMHHIISDGVSMQIITKEIADLYKGKELAE-----LHIQYKDFAVWQ 2260
Query: 89 D 89
+
Sbjct: 2261 N 2261
>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=tma22 PE=3 SV=2
Length = 194
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 44 VHHLSRNGVYLRDVKRWLAEVRGKDMPEA 72
V ++ G DVK WL E+ GK++PE+
Sbjct: 152 VEEITVQGDVSEDVKEWLLELYGKEIPES 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,420,625
Number of Sequences: 539616
Number of extensions: 2293309
Number of successful extensions: 5254
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5237
Number of HSP's gapped (non-prelim): 22
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)