Query 048680
Match_columns 121
No_of_seqs 60 out of 62
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 20:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wsp_A Axin 1 protein; signali 98.2 1.4E-05 4.7E-10 55.6 8.8 76 23-110 4-82 (84)
2 3pz7_A Dixin; DIX domain, olig 98.0 4.3E-05 1.5E-09 54.0 9.3 75 23-107 8-83 (91)
3 3pz8_A Segment polarity protei 97.7 0.00013 4.4E-09 52.9 7.5 77 23-107 5-82 (106)
4 1c1y_B Proto-onkogene serine/t 70.4 4.7 0.00016 27.5 3.6 32 40-72 2-41 (77)
5 4hpv_A S-adenosylmethionine sy 63.9 7.2 0.00025 33.5 4.3 37 26-62 345-382 (407)
6 2l05_A Serine/threonine-protei 54.3 15 0.0005 26.0 3.8 27 41-67 19-53 (95)
7 1rrb_A RAF-1 RBD, RAF proto-on 54.3 14 0.00049 26.6 3.8 24 49-73 36-59 (107)
8 1wxm_A A-RAF proto-oncogene se 53.2 39 0.0013 23.4 5.8 61 41-107 9-78 (86)
9 3ny5_A Serine/threonine-protei 42.6 26 0.00089 24.7 3.6 27 41-67 15-49 (96)
10 1c76_A Staphylokinase, SAK; be 33.4 1.5E+02 0.0051 22.1 6.8 70 31-100 33-116 (136)
11 2h54_A Caspase-1; allosteric s 28.3 51 0.0017 24.2 3.4 60 24-88 110-176 (178)
12 3ggz_E Vacuolar protein-sortin 26.3 30 0.001 19.9 1.4 11 56-66 19-29 (29)
13 2cu1_A Mitogen-activated prote 25.5 16 0.00054 26.3 0.2 56 41-117 21-76 (103)
14 2fp3_A Caspase NC; apoptosis, 24.0 43 0.0015 26.6 2.4 56 23-82 128-188 (316)
15 2qjl_A URM1, ubiquitin-related 23.1 1.6E+02 0.0053 19.0 4.7 38 23-64 3-44 (99)
16 2jrr_A Uncharacterized protein 21.3 60 0.002 21.3 2.3 25 86-110 30-56 (67)
17 2hwj_A AGR_C_2837P, hypothetic 21.1 84 0.0029 24.2 3.5 31 38-68 6-40 (205)
18 2jvm_A Uncharacterized protein 20.9 52 0.0018 22.4 2.0 24 86-109 43-68 (80)
19 2kue_A PKNB, serine/threonine- 20.1 1E+02 0.0036 20.7 3.5 50 8-64 46-96 (138)
No 1
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=98.16 E-value=1.4e-05 Score=55.56 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=61.2
Q ss_pred EEEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeecc---ccCcceEEecCCCCeeecC
Q 048680 23 RIHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRR---YKSGYVWQDLLNDDLITPI 99 (121)
Q Consensus 23 kv~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRs---YKngfVW~DL~dDD~I~P~ 99 (121)
...|+||++. -+.|.++.||- ..++|+|+|+-| .-++.|-.-+|-- +..|.||.+++||+-++|.
T Consensus 4 ~T~V~Y~~~~---e~~Py~~~ip~---~~iTL~dFK~~l------~k~g~yrffFK~~~~d~~~~~V~eEI~dD~~~LP~ 71 (84)
T 1wsp_A 4 SIVVAYYFCG---EPIPYRTLVRG---RAVTLGQFKELL------TKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPV 71 (84)
T ss_dssp CEEEEEEETT---CSSCEEEEETT---SCCBHHHHHHHC------CSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCC
T ss_pred ceEEEEEeCC---CCcceEEecCC---CcccHHHHHHhc------CCCCceEEEEeecCccccCCceEEEEcCCCccccc
Confidence 3569999954 67999998763 689999999999 4445777777766 3358999999999999999
Q ss_pred CCCeeEEeccc
Q 048680 100 SDNEYVLKGSE 110 (121)
Q Consensus 100 ~~~EYVLKgSe 110 (121)
..|-.|-|-.+
T Consensus 72 ~eGkIva~v~~ 82 (84)
T 1wsp_A 72 FEEKIIGKVEK 82 (84)
T ss_dssp BTTBEEEEEEE
T ss_pred cCCEEEEEEEe
Confidence 99999887543
No 2
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=98.03 E-value=4.3e-05 Score=53.97 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=61.0
Q ss_pred EEEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeecc-ccCcceEEecCCCCeeecCCC
Q 048680 23 RIHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRR-YKSGYVWQDLLNDDLITPISD 101 (121)
Q Consensus 23 kv~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRs-YKngfVW~DL~dDD~I~P~~~ 101 (121)
...|+|||.+ -+.|.++.||.+ ++.++|+|+|+-|+ -+..|-.-+|.- .-.|-||..++||+-++|...
T Consensus 8 ~TkV~Y~~d~---e~tPY~~~Ip~~-~~~iTL~dFK~~l~------r~g~yryfFK~~d~dfg~VkeEI~dD~~~LP~~e 77 (91)
T 3pz7_A 8 CTKVLYFTDR---SLTPFMVNIPKR-LEEVTLKDFKAAID------REGNHRYHFKAMDPEFGTVKEEIFHDDDAIPGWE 77 (91)
T ss_dssp CEEEEEECTT---CSSCEEEEESSC-STTCBHHHHHHHHC------CCSCEEEEEEEEETTTEEEEEEECCTTSBCCCBT
T ss_pred eeEEEEEcCC---CCCceEEECcCC-cccccHHHHHHhhC------CCCCceEEEeeeCcccCccceEecCCCceeeccC
Confidence 3568999854 479999999984 57899999999994 244677777753 556889999999999999999
Q ss_pred CeeEEe
Q 048680 102 NEYVLK 107 (121)
Q Consensus 102 ~EYVLK 107 (121)
|-.|-|
T Consensus 78 GkIva~ 83 (91)
T 3pz7_A 78 GKIVAW 83 (91)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 988765
No 3
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=97.71 E-value=0.00013 Score=52.87 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=58.6
Q ss_pred EEEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeecc-ccCcceEEecCCCCeeecCCC
Q 048680 23 RIHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRR-YKSGYVWQDLLNDDLITPISD 101 (121)
Q Consensus 23 kv~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRs-YKngfVW~DL~dDD~I~P~~~ 101 (121)
...|+||++. -+-|-++.|+.+ .+.++|+|+|+-|+ -||+| .|-.-||.- --.|-||..++||+-++|...
T Consensus 5 ~TkV~Y~~dd---E~tPY~~~Ip~~-~~~iTL~dFK~~l~-kr~~~---nYryfFK~~d~dfgvVkeEI~dD~~~LP~~e 76 (106)
T 3pz8_A 5 DTKIIYHMDE---EETPDLVKLPVA-PERVTLADFKNVLS-NRPVH---AYKFFFKSMDQDFGVVKEEIFDDNAKLPCFN 76 (106)
T ss_dssp CEEEEEECTT---CSSCEEEEESSC-SSSCBHHHHHHTCT-TSCGG---GBCCEEEEEETTTEEEEEECCCTTCBCCCBT
T ss_pred ceEEEEECCC---CCCceEEEccCC-cccccHHHHHHHHh-cCCCc---cceEEEeecCcccCeeeeEecCCcccccccC
Confidence 4679999975 378999999974 56799999999872 13322 344445543 445889999999999999999
Q ss_pred CeeEEe
Q 048680 102 NEYVLK 107 (121)
Q Consensus 102 ~EYVLK 107 (121)
|.+|.+
T Consensus 77 GkIv~w 82 (106)
T 3pz8_A 77 GRVVSW 82 (106)
T ss_dssp TBEEEE
T ss_pred CEEEEE
Confidence 999854
No 4
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=70.43 E-value=4.7 Score=27.47 Aligned_cols=32 Identities=41% Similarity=0.496 Sum_probs=24.6
Q ss_pred eeEEEecCC--------CCcccHHHHHHHHHHHhCCCCCcc
Q 048680 40 HLIRVHHLS--------RNGVYLRDVKRWLAEVRGKDMPEA 72 (121)
Q Consensus 40 H~ieV~~~~--------~~gl~LRDV~~rL~~LRGkgMp~~ 72 (121)
++|.|.+|+ ++|++|||....+-.+||= -|++
T Consensus 2 ~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L-~pe~ 41 (77)
T 1c1y_B 2 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL-QPEC 41 (77)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGG
T ss_pred ceEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC-CHHH
Confidence 467777765 4899999999999888886 3444
No 5
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=63.90 E-value=7.2 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.5
Q ss_pred EEEEEccCCC-CCCCeeEEEecCCCCcccHHHHHHHHH
Q 048680 26 IVYFLSRLGQ-VDHPHLIRVHHLSRNGVYLRDVKRWLA 62 (121)
Q Consensus 26 VVYyLsr~G~-leHPH~ieV~~~~~~gl~LRDV~~rL~ 62 (121)
-|+.||+=|+ ++.|++..|+....+|+.+.|+.+...
T Consensus 345 ~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~ 382 (407)
T 4hpv_A 345 QVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEIS 382 (407)
T ss_dssp EEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHHHHH
T ss_pred EEEEecccCCCCCCCeEEEEEEecCCCCChHHHHHHHH
Confidence 3688899888 999999999988888988877765543
No 6
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=54.27 E-value=15 Score=26.02 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.0
Q ss_pred eEEEecCC--------CCcccHHHHHHHHHHHhCC
Q 048680 41 LIRVHHLS--------RNGVYLRDVKRWLAEVRGK 67 (121)
Q Consensus 41 ~ieV~~~~--------~~gl~LRDV~~rL~~LRGk 67 (121)
+|.|.+|+ ++|++|||.+..+-.+||=
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L 53 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL 53 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC
Confidence 67777765 4899999999999999987
No 7
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=54.26 E-value=14 Score=26.58 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=19.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCCcce
Q 048680 49 RNGVYLRDVKRWLAEVRGKDMPEAF 73 (121)
Q Consensus 49 ~~gl~LRDV~~rL~~LRGkgMp~~y 73 (121)
++|++|||.+...-.+||=- |++-
T Consensus 36 rpG~tlrdaL~KaLk~R~L~-pe~C 59 (107)
T 1rrb_A 36 RNGMSLHDCLMKALKVRGLQ-PECC 59 (107)
T ss_dssp CTTCBHHHHHHHHHHHHTCC-TTTE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHc
Confidence 58999999999999999863 5544
No 8
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.24 E-value=39 Score=23.37 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=36.5
Q ss_pred eEEEecCC--------CCcccHHHHHHHHHHHhCCCCCcce-eeeeeccccCcceEEecCCCCeeecCCCCeeEEe
Q 048680 41 LIRVHHLS--------RNGVYLRDVKRWLAEVRGKDMPEAF-SWSYKRRYKSGYVWQDLLNDDLITPISDNEYVLK 107 (121)
Q Consensus 41 ~ieV~~~~--------~~gl~LRDV~~rL~~LRGkgMp~~y-SWS~KRsYKngfVW~DL~dDD~I~P~~~~EYVLK 107 (121)
+|.|.+|+ ++|++|||....+-.+|+=- |++- -.+..+..+.--=| |.-|-++.+.|-.+.
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~-pe~C~Vy~~~~~~~~~IdW-----dtDi~~L~~eEL~Ve 78 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN-QDCCVVYRLIKGRKTVTAW-----DTAIAPLDGEELIVE 78 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC-SSSEEEEEESSSCEEEECS-----SSBSTTCSSCEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC-HHHeEEEEcCCCCccccch-----hHhhhhccCcEEEEE
Confidence 66676664 48999999999998998864 3332 22222221111113 344556777777663
No 9
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=42.60 E-value=26 Score=24.73 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.5
Q ss_pred eEEEecCC--------CCcccHHHHHHHHHHHhCC
Q 048680 41 LIRVHHLS--------RNGVYLRDVKRWLAEVRGK 67 (121)
Q Consensus 41 ~ieV~~~~--------~~gl~LRDV~~rL~~LRGk 67 (121)
+|.|.+|+ ++|++|||.....-.+||=
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L 49 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL 49 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC
Confidence 57787775 4899999999998888876
No 10
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=33.45 E-value=1.5e+02 Score=22.14 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=43.0
Q ss_pred ccCCC-CCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcce-----------eeeeeccccCcce--EEecCCCCee
Q 048680 31 SRLGQ-VDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAF-----------SWSYKRRYKSGYV--WQDLLNDDLI 96 (121)
Q Consensus 31 sr~G~-leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~y-----------SWS~KRsYKngfV--W~DL~dDD~I 96 (121)
..+|+ +--||+||+++-...=+.=.++.+-....=-..|-+.| -|+|+-.-+..++ -.|++|+-|+
T Consensus 33 D~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~akie~~Y~d~~~~~~~tk~~~Ite~Gf~ 112 (136)
T 1c76_A 33 DGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFV 112 (136)
T ss_dssp CTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTCEEEEEEEETTTTEEEEEEEECCSSCEE
T ss_pred cCCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCcEEEEEehhhhcccccceeeeeccCcee
Confidence 44566 66799999998655555533333333333333442233 5998776655554 3688899999
Q ss_pred ecCC
Q 048680 97 TPIS 100 (121)
Q Consensus 97 ~P~~ 100 (121)
+|--
T Consensus 113 VPd~ 116 (136)
T 1c76_A 113 VPDL 116 (136)
T ss_dssp CCCC
T ss_pred ccch
Confidence 8854
No 11
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=28.25 E-value=51 Score=24.19 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=41.0
Q ss_pred EEEEEEEccCCCCCCCeeEEEecC--CCCcccHHHHHHHHHH-----HhCCCCCcceeeeeeccccCcceEE
Q 048680 24 IHIVYFLSRLGQVDHPHLIRVHHL--SRNGVYLRDVKRWLAE-----VRGKDMPEAFSWSYKRRYKSGYVWQ 88 (121)
Q Consensus 24 v~VVYyLsr~G~leHPH~ieV~~~--~~~gl~LRDV~~rL~~-----LRGkgMp~~ySWS~KRsYKngfVW~ 88 (121)
.-|+|+||.+.+ -.+.-+.+. ..+++.|.+|...++. |+|| |-.|-.-.=|+-+-|=||.
T Consensus 110 ~~v~~~lsHG~~---g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gK--PKlffiqACRg~~~g~v~~ 176 (178)
T 2h54_A 110 STFLVFMSHGIR---EGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDK--PKVIIIQACRGDSPGVVWF 176 (178)
T ss_dssp CEEEEEESCBCS---SCEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTS--CEEEEEESCSSSBCCCCCC
T ss_pred EEEEEEecCCCC---CeEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCC--ceEEEEECCCCCCCCCccC
Confidence 569999988755 122222221 1247999999998864 5565 8889888888877777774
No 12
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=26.30 E-value=30 Score=19.93 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.8
Q ss_pred HHHHHHHHHhC
Q 048680 56 DVKRWLAEVRG 66 (121)
Q Consensus 56 DV~~rL~~LRG 66 (121)
-+..||.+|||
T Consensus 19 kLAqRLRALR~ 29 (29)
T 3ggz_E 19 KLAQRLRALRG 29 (29)
T ss_pred HHHHHHHHHcC
Confidence 35689999996
No 13
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.54 E-value=16 Score=26.27 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=43.5
Q ss_pred eEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeeccccCcceEEecCCCCeeecCCCCeeEEeccccccCCCC
Q 048680 41 LIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLITPISDNEYVLKGSESLHLPCC 117 (121)
Q Consensus 41 ~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRsYKngfVW~DL~dDD~I~P~~~~EYVLKgSel~~~~~~ 117 (121)
+|+|+ ..+.++|+...++...|+-|-=-|. +++++.|+...|=.=|+-|++|.+..
T Consensus 21 Ii~f~----RPv~f~eL~~Kv~~~fGq~ldL~y~-----------------n~EllIpl~sQeDLDkaIellDrss~ 76 (103)
T 2cu1_A 21 ILQFP----RPVKLEDLRSKAKIAFGQSMDLHYT-----------------NNELVIPLTTQDDLDKAVELLDRSIH 76 (103)
T ss_dssp EEEEE----SSCCHHHHHHHHHHHHSSCEEEEEC-----------------SSSSCEECCSHHHHHHHHHHHHHCSS
T ss_pred EEecc----CCccHHHHHHHHHHHhCCeeeEEEe-----------------cceEEEeccCHHHHHHHHHHHccCCc
Confidence 45554 5689999999999999998754332 88999999988877788888766543
No 14
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=23.95 E-value=43 Score=26.60 Aligned_cols=56 Identities=11% Similarity=0.272 Sum_probs=37.5
Q ss_pred EEEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHH-----HhCCCCCcceeeeeecccc
Q 048680 23 RIHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAE-----VRGKDMPEAFSWSYKRRYK 82 (121)
Q Consensus 23 kv~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~-----LRGkgMp~~ySWS~KRsYK 82 (121)
-.-|||+||.+.+.++++.|- .. ....+.|.||..-++. |+|| |-.|-.-.=|.-+
T Consensus 128 D~~vv~ilSHG~~~~g~g~i~-g~-D~~~v~l~~I~~~f~~~~CpsL~gK--PKlffiQACRG~~ 188 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEGKEKVE-FR-DGSVVDMQKIKDHFQTAKCPYLVNK--PKVLMFPFARGDE 188 (316)
T ss_dssp SCEEEEEESCEECCTTCCEEE-CT-TSCEEEHHHHHHTTSTTTCGGGTTS--CEEEEESCC----
T ss_pred CEEEEEEccCCCccCCCCEEE-ee-cCcEEeHHHHHHHhccccChhhcCC--ceEEEEecCCCCc
Confidence 356999999999888877652 21 2235899999988864 5555 7788776666543
No 15
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=23.11 E-value=1.6e+02 Score=18.98 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=25.1
Q ss_pred EEEEEEEEc-c---CCCCCCCeeEEEecCCCCcccHHHHHHHHHHH
Q 048680 23 RIHIVYFLS-R---LGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEV 64 (121)
Q Consensus 23 kv~VVYyLs-r---~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~L 64 (121)
+|.|.|+-. | +|+-+ .+++.+.+++.+++|++++|.+-
T Consensus 3 ~i~V~~fa~lre~~~g~~~----~~~~l~~~~~~Tv~~L~~~L~~~ 44 (99)
T 2qjl_A 3 NVKVEFLGGLDAIFGKQRV----HKIKMDKEDPVTVGDLIDHIVST 44 (99)
T ss_dssp EEEEEEETTGGGGTTTCCE----EEEEECSCSCCBHHHHHHHHHHH
T ss_pred EEEEEEchHHHHHhCCCcE----EEEecCCCCCCcHHHHHHHHHHH
Confidence 578888863 3 24433 25555433678999999999754
No 16
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=21.30 E-value=60 Score=21.30 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=19.5
Q ss_pred eEEec-C-CCCeeecCCCCeeEEeccc
Q 048680 86 VWQDL-L-NDDLITPISDNEYVLKGSE 110 (121)
Q Consensus 86 VW~DL-~-dDD~I~P~~~~EYVLKgSe 110 (121)
||.+| . ++-.+-|-++-.|+||+.+
T Consensus 30 Vyl~ld~~~g~~~CpYCg~~f~l~~~~ 56 (67)
T 2jrr_A 30 VWLQIPEDTGWVECPYCDCKYVLKGSK 56 (67)
T ss_dssp EEEECCTTTSEEEETTTTEEEEETTSG
T ss_pred EEEEccCCCCeEECCCCCCEEEECCCc
Confidence 67777 3 4567889999999999753
No 17
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=21.13 E-value=84 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCeeEEEecC----CCCcccHHHHHHHHHHHhCCC
Q 048680 38 HPHLIRVHHL----SRNGVYLRDVKRWLAEVRGKD 68 (121)
Q Consensus 38 HPH~ieV~~~----~~~gl~LRDV~~rL~~LRGkg 68 (121)
-|++|+|+.. .|.-|.+++|..++.++++..
T Consensus 6 ~~~l~~v~I~~L~PTQ~~VG~~ev~~K~~~~~~~~ 40 (205)
T 2hwj_A 6 EPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETR 40 (205)
T ss_dssp SCBEEEEEGGGCBCSBSEECHHHHHHHHHHHHTCC
T ss_pred CCceeEEEHHHccCcchhhhHHHHHHHHHHHHhhh
Confidence 4679999863 567888999999999999653
No 18
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=20.87 E-value=52 Score=22.39 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.8
Q ss_pred eEEec--CCCCeeecCCCCeeEEecc
Q 048680 86 VWQDL--LNDDLITPISDNEYVLKGS 109 (121)
Q Consensus 86 VW~DL--~dDD~I~P~~~~EYVLKgS 109 (121)
||.|| .++-..-|-++-.|+||+.
T Consensus 43 VyL~ld~~~g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 43 VWLSIPHETGFVECGYCDRRYIHESF 68 (80)
T ss_dssp EEEECCTTTCEEECSSSSCEEEEHHH
T ss_pred EEEEccCCCCeEECCCCCCEEEecCC
Confidence 66667 3456788999999999975
No 19
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=20.09 E-value=1e+02 Score=20.65 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=34.6
Q ss_pred cceecCCCCCCcceeE-EEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHHH
Q 048680 8 GKVINNNINNGGEVRR-IHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEV 64 (121)
Q Consensus 8 ~~~~~~~~~~~~~~rk-v~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~L 64 (121)
++||..++..|..+.+ -.|..++|.+ |-.++|| .=-|..++|++..|..+
T Consensus 46 g~Vi~q~P~~G~~v~~g~~V~l~vS~G-----~~~v~vP--d~~G~~~~~A~~~L~~~ 96 (138)
T 2kue_A 46 GKVIGTNPPANQTSAITNVVIIIVGSG-----PATKDIP--DVAGQTVDVAQKNLNVY 96 (138)
T ss_dssp TSEEEESSCSSSEEETTSCEEEEEEEC-----CCEEECC--CCTTSBHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCcCCCCEEEEEEECC-----ccceeCC--ccCCCCHHHHHHHHHHC
Confidence 6889888877765543 3344455665 3455665 45799999999999775
Done!