Query 048680
Match_columns 121
No_of_seqs 60 out of 62
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 20:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wspa1 d.15.1.8 (A:750-832) A 98.6 1.1E-07 8.3E-12 64.3 8.9 76 24-111 4-82 (83)
2 d2fug13 d.15.13.1 (1:250-333) 71.9 1.8 0.00013 27.6 3.4 25 33-61 6-30 (84)
3 d1q5ya_ d.58.18.4 (A:) Nickel 70.5 0.59 4.3E-05 30.2 0.8 32 35-66 40-71 (84)
4 d2bj7a2 d.58.18.4 (A:51-132) N 66.4 0.81 5.9E-05 29.2 0.8 32 35-66 41-72 (82)
5 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 60.4 4.1 0.0003 25.7 3.4 28 49-76 19-46 (77)
6 d1wxma1 d.15.1.5 (A:8-80) A-Ra 55.8 5.2 0.00038 25.0 3.3 23 49-71 18-40 (73)
7 d1nula_ c.61.1.1 (A:) Xanthine 28.5 27 0.002 22.7 3.6 61 36-100 77-138 (150)
8 d1rhfa2 b.1.1.4 (A:98-182) Tyr 25.3 18 0.0013 20.9 2.0 16 65-85 26-41 (85)
9 d1xo3a_ d.15.3.3 (A:) C9orf74 24.1 41 0.003 20.5 3.7 35 40-75 25-59 (101)
10 d2saka_ d.15.5.1 (A:) Staphylo 23.4 81 0.0059 21.4 5.4 68 32-101 19-102 (121)
11 d2nn6h3 d.51.1.1 (H:168-293) R 22.6 12 0.00089 25.2 0.8 9 83-91 33-41 (126)
12 d1wjma_ b.55.1.1 (A:) beta-spe 22.2 25 0.0018 20.5 2.2 31 35-65 78-113 (123)
13 d3buxb3 d.93.1.1 (B:264-351) C 21.5 71 0.0052 20.7 4.5 26 52-79 9-36 (88)
14 d1tdja2 d.58.18.2 (A:336-423) 21.4 13 0.00092 23.5 0.7 14 82-95 66-79 (88)
15 d1hw6a_ c.1.7.1 (A:) 2,5-diket 21.1 56 0.0041 22.0 4.2 42 36-77 98-139 (262)
16 d2oaia1 d.145.1.4 (A:5-91) Hem 20.5 27 0.002 21.0 2.1 21 92-112 1-21 (87)
No 1
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.62 E-value=1.1e-07 Score=64.29 Aligned_cols=76 Identities=20% Similarity=0.389 Sum_probs=64.4
Q ss_pred EEEEEEEccCCCCCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeecc---ccCcceEEecCCCCeeecCC
Q 048680 24 IHIVYFLSRLGQVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRR---YKSGYVWQDLLNDDLITPIS 100 (121)
Q Consensus 24 v~VVYyLsr~G~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRs---YKngfVW~DL~dDD~I~P~~ 100 (121)
+-|+||++ .-+-|-++.|| .+.++|+|+|+-| .-|+.|-+-+|-- +-+++||.|++|||-++|+.
T Consensus 4 ~~v~Y~~~---~e~~Py~~~ip---~~~iTL~dFK~~~------~~~G~y~f~FK~~~~d~~~~~V~~ei~dD~~~LP~~ 71 (83)
T d1wspa1 4 IVVAYYFC---GEPIPYRTLVR---GRAVTLGQFKELL------TKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPVF 71 (83)
T ss_dssp EEEEEEET---TCSSCEEEEET---TSCCBHHHHHHHC------CSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCCB
T ss_pred eEEEEEeC---CCCCceEEecc---CCcccHHHHHHhc------CCCCcEEEEEEecCcccCCCeEEEEECCCCccCccc
Confidence 56999994 44789887776 3579999999999 6678899999976 67899999999999999999
Q ss_pred CCeeEEecccc
Q 048680 101 DNEYVLKGSES 111 (121)
Q Consensus 101 ~~EYVLKgSel 111 (121)
.|-.|-|-.++
T Consensus 72 egkIvakv~~i 82 (83)
T d1wspa1 72 EEKIIGKVEKV 82 (83)
T ss_dssp TTBEEEEEEEC
T ss_pred CCEEEEEEEec
Confidence 99999886543
No 2
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=71.90 E-value=1.8 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCCCCCeeEEEecCCCCcccHHHHHHHH
Q 048680 33 LGQVDHPHLIRVHHLSRNGVYLRDVKRWL 61 (121)
Q Consensus 33 ~G~leHPH~ieV~~~~~~gl~LRDV~~rL 61 (121)
.|++.+|-+.|||+ |.+|||+++.+
T Consensus 6 sG~V~~PGvyEvp~----G~tl~elI~~~ 30 (84)
T d2fug13 6 SGPVKRPGVYELPM----GTTFRELIYEW 30 (84)
T ss_dssp ESSBSSCEEEEEET----TCBHHHHHTTT
T ss_pred eCCccCCcEEEEcC----CCCHHHHHHHh
Confidence 48899999999996 78999999754
No 3
>d1q5ya_ d.58.18.4 (A:) Nickel responsive regulator NikR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=70.53 E-value=0.59 Score=30.17 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCCeeEEEecCCCCcccHHHHHHHHHHHhC
Q 048680 35 QVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRG 66 (121)
Q Consensus 35 ~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRG 66 (121)
+++|-|-|||-....++-+++++.++|.++||
T Consensus 40 Hld~~~CLEvivl~G~~~~i~~la~~l~~~kG 71 (84)
T d1q5ya_ 40 HINHDDCLEIAVLKGDMGDVQHFADDVIAQRG 71 (84)
T ss_dssp ECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTT
T ss_pred ecCCCceEEEEEEEccHHHHHHHHHHHhccCC
Confidence 58999999999887788999999999999998
No 4
>d2bj7a2 d.58.18.4 (A:51-132) Nickel responsive regulator NikR, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=66.38 E-value=0.81 Score=29.24 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCCCCeeEEEecCCCCcccHHHHHHHHHHHhC
Q 048680 35 QVDHPHLIRVHHLSRNGVYLRDVKRWLAEVRG 66 (121)
Q Consensus 35 ~leHPH~ieV~~~~~~gl~LRDV~~rL~~LRG 66 (121)
++||-+-|||-....++-+++++.++|.++||
T Consensus 41 Hld~~~CLEvivl~G~~~~i~~la~~l~~~kG 72 (82)
T d2bj7a2 41 HMDEHNCLEVIVVKGEAKKIKMIADKLLSLKG 72 (82)
T ss_dssp ECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTT
T ss_pred ecCCCceEEEEEEEccHHHHHHHHHHHhhcCC
Confidence 58999999999877788999999999999987
No 5
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.37 E-value=4.1 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCCcceeee
Q 048680 49 RNGVYLRDVKRWLAEVRGKDMPEAFSWS 76 (121)
Q Consensus 49 ~~gl~LRDV~~rL~~LRGkgMp~~ySWS 76 (121)
++|.+|||+..++-..||=-.+.---+.
T Consensus 19 rpG~tird~L~k~l~kRgl~~~~c~V~~ 46 (77)
T d1c1yb_ 19 RNGMSLHDCLMKALKVRGLQPECCAVFR 46 (77)
T ss_dssp CTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 6899999999999999987644333333
No 6
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.80 E-value=5.2 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCCc
Q 048680 49 RNGVYLRDVKRWLAEVRGKDMPE 71 (121)
Q Consensus 49 ~~gl~LRDV~~rL~~LRGkgMp~ 71 (121)
++|.++||+..++-..||=-.+.
T Consensus 18 rpG~tir~~L~k~l~kRgl~~~~ 40 (73)
T d1wxma1 18 RDGMSVYDSLDKALKVRGLNQDC 40 (73)
T ss_dssp CSSCBSHHHHHHHHHTTTCCSSS
T ss_pred cCCCCHHHHHHHHHHHcCCCHHH
Confidence 68999999999999999876544
No 7
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase) {Escherichia coli [TaxId: 562]}
Probab=28.52 E-value=27 Score=22.70 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeeeeccccCcceEEecCCCCeee-cCC
Q 048680 36 VDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSYKRRYKSGYVWQDLLNDDLIT-PIS 100 (121)
Q Consensus 36 leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~KRsYKngfVW~DL~dDD~I~-P~~ 100 (121)
++..|++=|.=-...|.||+.+++.|...| .+..| ..-++.++-.|...++.+|+.|+ |=.
T Consensus 77 ~~gk~VLiVDDI~dtG~Tl~~~~~~l~~~~---~atl~-~k~~~~~~pd~~~~~~~~d~WivfPWe 138 (150)
T d1nula_ 77 GDGEGFIVIDDLVDTGGTAVAIREMYPKAH---FVTIF-AKPAGRPLVDDYVVDIPQDTWIEQPWD 138 (150)
T ss_dssp SCCTTEEEEEEEECTTSSHHHHHHHCTTSE---EEEEE-ECGGGGGGCSEEEEECCTTCEEECGGG
T ss_pred cCCCceEEEEecccchHHHHHHHHHhhcCc---EEEEE-EccCCCcCCCcEEeEccCCcEEEeCCC
Confidence 445666666644578999999999885432 33332 22223367789999999888665 543
No 8
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.30 E-value=18 Score=20.89 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=11.9
Q ss_pred hCCCCCcceeeeeeccccCcc
Q 048680 65 RGKDMPEAFSWSYKRRYKSGY 85 (121)
Q Consensus 65 RGkgMp~~ySWS~KRsYKngf 85 (121)
.|..+|..|.| ||||-
T Consensus 26 ~g~P~P~~i~W-----~k~g~ 41 (85)
T d1rhfa2 26 VGPPEPVTIVW-----WRGTT 41 (85)
T ss_dssp ECSSSCCEEEE-----EETTE
T ss_pred ecCCcceEEEE-----EECCE
Confidence 57778888999 56663
No 9
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.07 E-value=41 Score=20.54 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=25.7
Q ss_pred eeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceee
Q 048680 40 HLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSW 75 (121)
Q Consensus 40 H~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySW 75 (121)
|-++++. ..++.+++|++++|..--.+-.+..|..
T Consensus 25 ~~v~l~~-~~~~~TV~dll~~L~~~~p~~~~~l~~~ 59 (101)
T d1xo3a_ 25 HQVALPG-QEEPWDIRNLLVWIKKNLLKERPELFIQ 59 (101)
T ss_dssp EEEECCS-SSCCCCHHHHHHHHHHHHCCSCGGGSCC
T ss_pred EEEEcCC-CCCCcCHHHHHHHHHHhCCcchhhhhcc
Confidence 3444543 4579999999999988877777777643
No 10
>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId: 1280]}
Probab=23.42 E-value=81 Score=21.39 Aligned_cols=68 Identities=9% Similarity=0.166 Sum_probs=39.3
Q ss_pred cCCC-CCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcce-----------eeee-ec---cccCcceEEecCCCCe
Q 048680 32 RLGQ-VDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAF-----------SWSY-KR---RYKSGYVWQDLLNDDL 95 (121)
Q Consensus 32 r~G~-leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~y-----------SWS~-KR---sYKngfVW~DL~dDD~ 95 (121)
.+|+ +--||+||+++-...=+.=.++.+.....=-..|-+.| -|+| +| .++.- -.|++++-|
T Consensus 19 ~~g~~il~P~Y~ei~l~~G~tl~k~eil~~Vq~~idas~~~~fkvV~~~~~~~ie~ty~d~~~~~~~tk--~~~It~~gF 96 (121)
T d2saka_ 19 SKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETK--SFPITEKGF 96 (121)
T ss_dssp TTCCEEEEEEEEEEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEECTTCCEEEEEEETTTTEEEEE--EECCCSSCE
T ss_pred CCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhccceEEEecCccceeEeeeehhhhccccce--eeeecCCce
Confidence 4566 55799999998655555544444333333333343333 5766 22 23322 248899999
Q ss_pred eecCCC
Q 048680 96 ITPISD 101 (121)
Q Consensus 96 I~P~~~ 101 (121)
++|.-.
T Consensus 97 ~vPd~s 102 (121)
T d2saka_ 97 VVPDLS 102 (121)
T ss_dssp ECCCCT
T ss_pred ecccHH
Confidence 999764
No 11
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.55 E-value=12 Score=25.19 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=7.2
Q ss_pred CcceEEecC
Q 048680 83 SGYVWQDLL 91 (121)
Q Consensus 83 ngfVW~DL~ 91 (121)
|||||.--+
T Consensus 33 NGyIWIs~~ 41 (126)
T d2nn6h3 33 NGFIWIYPT 41 (126)
T ss_dssp TTEEEEECC
T ss_pred CCEEEeeCC
Confidence 899998554
No 12
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}
Probab=22.23 E-value=25 Score=20.49 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCCCeeEEEecCCCCccc-----HHHHHHHHHHHh
Q 048680 35 QVDHPHLIRVHHLSRNGVY-----LRDVKRWLAEVR 65 (121)
Q Consensus 35 ~leHPH~ieV~~~~~~gl~-----LRDV~~rL~~LR 65 (121)
.-.|||.+.+...+..-.+ -.|..+|+++|+
T Consensus 78 ~~~~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~ 113 (123)
T d1wjma_ 78 YRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVN 113 (123)
T ss_dssp CSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred ccccCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHH
Confidence 3568998888765443333 348889998886
No 13
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=71 Score=20.65 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHhCCCCCcceee--eeec
Q 048680 52 VYLRDVKRWLAEVRGKDMPEAFSW--SYKR 79 (121)
Q Consensus 52 l~LRDV~~rL~~LRGkgMp~~ySW--S~KR 79 (121)
|+-.+||.||...|-| |.+|.+ ||.|
T Consensus 9 lTYDevk~rL~~~~~k--PGSYiFRlSCTr 36 (88)
T d3buxb3 9 LTYDEVKARLQKFIHK--PGSYIFRLSCTR 36 (88)
T ss_dssp CCHHHHHHHHGGGTTS--TTEEEEEECSSS
T ss_pred EeHHHHHHHHHHHhcC--CCceEEeecccc
Confidence 6778999999999988 777765 5555
No 14
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.45 E-value=13 Score=23.48 Aligned_cols=14 Identities=36% Similarity=0.696 Sum_probs=11.4
Q ss_pred cCcceEEecCCCCe
Q 048680 82 KSGYVWQDLLNDDL 95 (121)
Q Consensus 82 KngfVW~DL~dDD~ 95 (121)
+.||-+.|+|||++
T Consensus 66 ~~Gy~~~Dltdne~ 79 (88)
T d1tdja2 66 DGGYSVVDLSDDEM 79 (88)
T ss_dssp SSSCEEETTSSCHH
T ss_pred HCCCceEECcCCHH
Confidence 46788999999875
No 15
>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]}
Probab=21.13 E-value=56 Score=22.01 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=33.4
Q ss_pred CCCCeeEEEecCCCCcccHHHHHHHHHHHhCCCCCcceeeee
Q 048680 36 VDHPHLIRVHHLSRNGVYLRDVKRWLAEVRGKDMPEAFSWSY 77 (121)
Q Consensus 36 leHPH~ieV~~~~~~gl~LRDV~~rL~~LRGkgMp~~ySWS~ 77 (121)
+||-.++-++.+........++.+.|..||=.|+-..+-+|.
T Consensus 98 ~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 139 (262)
T d1hw6a_ 98 LDQVDLYLVHWPTPAADNYVHAWEKMIELRAAGLTRSIGVSN 139 (262)
T ss_dssp CSCEEEEEECCCCTTCSSHHHHHHHHHHHHHTTSEEEEEEES
T ss_pred cceeeeeeeeccCCCCccchhhHHHHHHHHHhCcceeeeccc
Confidence 577777777766666667889999999999999988887763
No 16
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}
Probab=20.53 E-value=27 Score=20.97 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=17.3
Q ss_pred CCCeeecCCCCeeEEeccccc
Q 048680 92 NDDLITPISDNEYVLKGSESL 112 (121)
Q Consensus 92 dDD~I~P~~~~EYVLKgSel~ 112 (121)
|+..|....+|.|++.|+--+
T Consensus 1 E~~~i~~~~dg~~~v~G~~~l 21 (87)
T d2oaia1 1 EDALMVTREDGSFLIDGTLPI 21 (87)
T ss_dssp CCCSEEECTTSCEEEETTCBH
T ss_pred CCCCeEEcCCCEEEEEecCCH
Confidence 577899999999999997543
Done!