BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048681
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 124/307 (40%), Gaps = 72/307 (23%)
Query: 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72
L LH+ N L GT+P L +++ L+ L L+LN L I + Y+ TL L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--------LMYVKTLETL 471
Query: 73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLN 132
+L F P + + +L + +S G IP IG L L
Sbjct: 472 IL--------DFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 520
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL---------------------- 170
LS N F G+IP+ +GD SL +LDL+ N G IP +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 171 ---AIGCFNLEYLVESLMFTTKETSYSYKGKPLN---KMYG---------------IDLS 209
C L+E +++ + P N ++YG +D+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 210 CNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQL 259
N L G IP +IG + + LNL HN+++G IP LD+S N L+G+IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 260 VELNALA 266
L L
Sbjct: 701 SALTMLT 707
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 112/258 (43%), Gaps = 42/258 (16%)
Query: 21 NDLRGTLPW-CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLH 79
N+ G LP L + LKVLDL N+ + + S L +L S+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASL---------------- 370
Query: 80 FPNSFTITMSWRPFRMPI------QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNL 133
T+ +S F PI L LY+ F G IP + L+ L+L
Sbjct: 371 ----LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHL 425
Query: 134 SRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY 193
S N G+IPSS+G L+ L+ L L N L GEIP+ L LE L+ T E
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPS 484
Query: 194 SYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS---------- 243
+ I LS N+L GEIP IG+L + L LS+N+ +G IP+
Sbjct: 485 GLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 244 LDVSYNNLNGKIPPQLVE 261
LD++ N NG IP + +
Sbjct: 543 LDLNTNLFNGTIPAAMFK 560
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 7 LFRLRNLQELHMGANDLRGTLPWCLENIT-SLKVLDLYLNQLTRNISSSPLLHLITSIEY 65
L ++R L+ L + N+ G LP L N++ SL LDL N N S L +L + +
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN----NFSGPILPNLCQNPK- 393
Query: 66 LSTLNYLVLVSMLHFPNSFTITMSWRPFRMP--IQSHWHLATLYVSKKFFQGNIPLEIGV 123
+TL L L + N FT ++P + + L +L++S + G IP +G
Sbjct: 394 -NTLQELYLQN-----NGFT-------GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG- 439
Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
+L L L N +G IP + + +L+ L L N LTGEIP L+ C NL ++ S
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLS 498
Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
T E + G+ L + + LS N G IP ++G + L+L+ N G IP+
Sbjct: 499 NNRLTGEIP-KWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 139/329 (42%), Gaps = 71/329 (21%)
Query: 4 ISGLFRLRNLQELHMGANDLRGT--LPWCL-ENITSLKVLDLYLNQLTRNISSSPLLHL- 59
+SG +L +L+ L + AN + G + W L + LK L + N+++ ++ S ++L
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203
Query: 60 ---ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGN 116
++S + + + +L S L + +S F I + L L +S F G
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGP 262
Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQL------------- 162
IP + L YL+L+ N+F G IP + G ++L LDLS N
Sbjct: 263 IPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 163 -----------TGEIP-----KHLAIGCFNLEY------LVESL------MFTTKETSYS 194
+GE+P K + +L + L ESL + T +S +
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 195 YKG--------KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS--- 243
+ G P N + + L N G+IPP + + + +L+LS N L+G IPS
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 244 -------LDVSYNNLNGKIPPQLVELNAL 265
L + N L G+IP +L+ + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 28/113 (24%)
Query: 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165
L +S G IP EIG P L LNL N+ GSIP +GDL L LDLS N+L G
Sbjct: 637 LDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP 218
IP+ ++ L L E IDLS N L G IP
Sbjct: 696 IPQAMSA----LTMLTE-----------------------IDLSNNNLSGPIP 721
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
+M+L++S N G IP IG + L L+L HN ++G IP +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG---------------- 677
Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSL 244
L + +DLS NKL G IP + LT + ++LS+NNL+G IP +
Sbjct: 678 -----------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 42/165 (25%)
Query: 128 LMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHNQLT-------------GEIPKHLAI 172
L +LN+S N +F G + + LNSL+ LDLS N ++ GE+ KHLAI
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGEL-KHLAI 185
Query: 173 G------------CFNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP 219
C NLE+L V S F+ T + G + + +D+S NKL G+
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFS---TGIPFLGD-CSALQHLDISGNKLSGDFSR 241
Query: 220 QIGKLTRVRALNLSHNNLTGVIPS--------LDVSYNNLNGKIP 256
I T ++ LN+S N G IP L ++ N G+IP
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 76 SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR 135
SM+ S+ + + P I S +L L + G+IP E+G L L+LS
Sbjct: 633 SMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSS 689
Query: 136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168
N+ DG IP ++ L L +DLS+N L+G IP+
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-CFNLEYL---VESLMFTT 188
LS + +GS+ S SL LDLS N L+G + ++G C L++L +L F
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGE------IPPQIGKLTRVRALNLSHNNLTGVIP 242
K + G LN + +DLS N + G + G+L + L +S N ++G +
Sbjct: 143 KVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDVD 195
Query: 243 S--------LDVSYNNLNGKIP 256
LDVS NN + IP
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP 217
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 16 LHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-PLLHLITSIE 64
L++G ND+ G++P + ++ L +LDL N+L I + L ++T I+
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 124/307 (40%), Gaps = 72/307 (23%)
Query: 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72
L LH+ N L GT+P L +++ L+ L L+LN L I + Y+ TL L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--------LMYVKTLETL 468
Query: 73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLN 132
+L F P + + +L + +S G IP IG L L
Sbjct: 469 IL--------DFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 517
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP------------------------- 167
LS N F G+IP+ +GD SL +LDL+ N G IP
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN---KMYG---------------IDLS 209
+ C L+E +++ + P N ++YG +D+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 210 CNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQL 259
N L G IP +IG + + LNL HN+++G IP LD+S N L+G+IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 260 VELNALA 266
L L
Sbjct: 698 SALTMLT 704
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 112/258 (43%), Gaps = 42/258 (16%)
Query: 21 NDLRGTLPW-CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLH 79
N+ G LP L + LKVLDL N+ + + S L +L S+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASL---------------- 367
Query: 80 FPNSFTITMSWRPFRMPI------QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNL 133
T+ +S F PI L LY+ F G IP + L+ L+L
Sbjct: 368 ----LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHL 422
Query: 134 SRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY 193
S N G+IPSS+G L+ L+ L L N L GEIP+ L LE L+ T E
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPS 481
Query: 194 SYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS---------- 243
+ I LS N+L GEIP IG+L + L LS+N+ +G IP+
Sbjct: 482 GLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 244 LDVSYNNLNGKIPPQLVE 261
LD++ N NG IP + +
Sbjct: 540 LDLNTNLFNGTIPAAMFK 557
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 7 LFRLRNLQELHMGANDLRGTLPWCLENIT-SLKVLDLYLNQLTRNISSSPLLHLITSIEY 65
L ++R L+ L + N+ G LP L N++ SL LDL N N S L +L + +
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN----NFSGPILPNLCQNPK- 390
Query: 66 LSTLNYLVLVSMLHFPNSFTITMSWRPFRMP--IQSHWHLATLYVSKKFFQGNIPLEIGV 123
+TL L L + N FT ++P + + L +L++S + G IP +G
Sbjct: 391 -NTLQELYLQN-----NGFT-------GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG- 436
Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
+L L L N +G IP + + +L+ L L N LTGEIP L+ C NL ++ S
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLS 495
Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
T E + G+ L + + LS N G IP ++G + L+L+ N G IP+
Sbjct: 496 NNRLTGEIP-KWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 139/329 (42%), Gaps = 71/329 (21%)
Query: 4 ISGLFRLRNLQELHMGANDLRGT--LPWCL-ENITSLKVLDLYLNQLTRNISSSPLLHL- 59
+SG +L +L+ L + AN + G + W L + LK L + N+++ ++ S ++L
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 200
Query: 60 ---ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGN 116
++S + + + +L S L + +S F I + L L +S F G
Sbjct: 201 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGP 259
Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQL------------- 162
IP + L YL+L+ N+F G IP + G ++L LDLS N
Sbjct: 260 IPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 163 -----------TGEIP-----KHLAIGCFNLEY------LVESL------MFTTKETSYS 194
+GE+P K + +L + L ESL + T +S +
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 195 YKG--------KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS--- 243
+ G P N + + L N G+IPP + + + +L+LS N L+G IPS
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 244 -------LDVSYNNLNGKIPPQLVELNAL 265
L + N L G+IP +L+ + L
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 28/113 (24%)
Query: 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165
L +S G IP EIG P L LNL N+ GSIP +GDL L LDLS N+L G
Sbjct: 634 LDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP 218
IP+ ++ L L E IDLS N L G IP
Sbjct: 693 IPQAMSA----LTMLTE-----------------------IDLSNNNLSGPIP 718
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
+M+L++S N G IP IG + L L+L HN ++G IP +
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG---------------- 674
Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSL 244
L + +DLS NKL G IP + LT + ++LS+NNL+G IP +
Sbjct: 675 -----------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 42/165 (25%)
Query: 128 LMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHNQLT-------------GEIPKHLAI 172
L +LN+S N +F G + + LNSL+ LDLS N ++ GE+ KHLAI
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGEL-KHLAI 182
Query: 173 G------------CFNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP 219
C NLE+L V S F+ T + G + + +D+S NKL G+
Sbjct: 183 SGNKISGDVDVSRCVNLEFLDVSSNNFS---TGIPFLGD-CSALQHLDISGNKLSGDFSR 238
Query: 220 QIGKLTRVRALNLSHNNLTGVIPS--------LDVSYNNLNGKIP 256
I T ++ LN+S N G IP L ++ N G+IP
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 283
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 76 SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR 135
SM+ S+ + + P I S +L L + G+IP E+G L L+LS
Sbjct: 630 SMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSS 686
Query: 136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168
N+ DG IP ++ L L +DLS+N L+G IP+
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-CFNLEYL---VESLMFTT 188
LS + +GS+ S SL LDLS N L+G + ++G C L++L +L F
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGE------IPPQIGKLTRVRALNLSHNNLTGVIP 242
K + G LN + +DLS N + G + G+L + L +S N ++G +
Sbjct: 140 KVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDVD 192
Query: 243 S--------LDVSYNNLNGKIP 256
LDVS NN + IP
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIP 214
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 16 LHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-PLLHLITSIE 64
L++G ND+ G++P + ++ L +LDL N+L I + L ++T I+
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 5 SGLFRLRNLQELHMGA-NDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
S L L L L++G N+L G +P + +T L L +T S + ++ I
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL-----YITHTNVSGAIPDFLSQI 124
Query: 64 EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
+ L TL++ P S I S +L + G IP G
Sbjct: 125 KTLVTLDFSYNALSGTLPPS-------------ISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
+ + +SRN G IP + +LN L F+DLS N L G+ A F + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQK 225
Query: 184 LMFTTKETSYSYKGKPLNK-MYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
+ ++ L+K + G+DL N++ G +P + +L + +LN+S NNL G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 42/161 (26%)
Query: 118 PLEIGVYFPRLMYLNL----SRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173
P I L YLN N G IP +I L L +L ++H ++G IP L+
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-- 122
Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
++ LV +D S N L G +PP I L + +
Sbjct: 123 --QIKTLVT-----------------------LDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 234 HNNLTGVIP-----------SLDVSYNNLNGKIPPQLVELN 263
N ++G IP S+ +S N L GKIPP LN
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 141 SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
+P+ I +L++L+ LDLSHN+LT +P L CF L+Y
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYF 298
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIPSL 244
E+P +I L+ +R L+LSHN LT + L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT 48
N + +F+ L L++ N L LP ++N+++L+VLDL N+LT
Sbjct: 237 FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 6 GLF-RLRNLQELHMGANDLRGTLP-WCLENITSLKVLDLYLNQLT 48
G+F L NL+EL++G+N L G LP +++T L VLDL NQLT
Sbjct: 58 GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDL--NSLKFLDLSHN 160
+G+I + V P L YL+LSRN S S DL NSL+ LDLS N
Sbjct: 334 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDL--NSLKFLDLSHN 160
+G+I + V P L YL+LSRN S S DL NSL+ LDLS N
Sbjct: 339 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 57 LHLITSIEYLSTLNYLVLV--SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
LH I++++ L+ L YL+L + PN ++ +L L + + Q
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT------------NLKELVLVENQLQ 122
Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGD-LNSLKFLDLSHNQL 162
++P + L YLNL+ N+ S+P + D L +L LDLS+NQL
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 30/171 (17%)
Query: 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
LR+L+ L + N +R + SL L+L+ N+LT + P + EYLS L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT----TVP----TQAFEYLSKL 109
Query: 70 NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATL----YVSKKFFQGNIPLE---IG 122
L L + N S+ R+P L L Y+S+ F+G + L +G
Sbjct: 110 RELWLRN-----NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Query: 123 V----------YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
+ RL L LS N D P S L SL+ L L H Q+
Sbjct: 165 MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
LR+L+ L + N +R + SL L+L+ N+LT + P + EYLS L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT----TVP----TQAFEYLSKL 109
Query: 70 NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATL----YVSKKFFQGNIPLE---IG 122
L L + N S+ R+P L L Y+S+ F+G + L +G
Sbjct: 110 RELWLRN-----NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Query: 123 V----------YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL L LS N D P S L SL+ L L H Q+
Sbjct: 165 MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 123 VYFPRLMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHN 160
V P L +L+LSRN F G S SLK+LDLS N
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 123 VYFPRLMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHN 160
V P L +L+LSRN F G S SLK+LDLS N
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
P L YLN +RN +L +D+SHN E+ HL L+ ++
Sbjct: 127 PLLTYLNCARN--------------TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQT-Q 171
Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
TT + S+ NK+ +D+S NKL+ + +T+ L+L+ N
Sbjct: 172 LTTLDCSF-------NKITELDVSQNKLLNRLNCDTNNITK---LDLNQN 211
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
F + LN+ E D I + G +N FL + +L G P+ + +G F +
Sbjct: 38 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 90
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
F + LN+ E D I + G +N FL + +L G P+ + +G F +
Sbjct: 33 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 85
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
F + LN+ E D I + G +N FL + +L G P+ + +G F +
Sbjct: 51 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 103
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
PR L+LS+N I L+ L+ L LSHN++ + H+ + +LEYL S
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVS-- 108
Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQIGKLTRVRALNLS 233
+ P+ + +DLS N V + + G LT++ L LS
Sbjct: 109 ---HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|3F8U|B Chain B, TapasinERP57 HETERODIMER
pdb|3F8U|D Chain D, TapasinERP57 HETERODIMER
Length = 401
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP---RLMYLNLSR 135
W P P Q +LAT+++ + QG + LE+ VY P LM L+R
Sbjct: 257 WLPRVQPFQEGTYLATIHL--PYLQGQVTLELAVYKPPKVSLMPATLAR 303
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 48/163 (29%)
Query: 123 VYFPRLMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHNQLTG--------EIPKHLAI 172
V P L +L+LSRN F G S SLK+LDLS N + E +HL
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427
Query: 173 GCFNLEYLVESLMFTT------KETSYSYKGKPLN------------KMYG--------- 205
NL+ + E +F + + S+++ N KM G
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 206 -----------IDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237
+DLS +L P L+ ++ LN+SHNN
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215
CF E +V L +++ + YKG+P NK + ++ NK G
Sbjct: 168 CFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYEIVSNKRNG 209
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 14 QELH-MGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL-ITSIEYLSTLNY 71
QEL+ M + L ++P+ L + T K+L Y N+ + I SS +L++ + +Y+ T Y
Sbjct: 809 QELNSMVTDTLNNSIPFKLSSYTDDKILISYFNKFFKRIKSSSVLNMRYKNDKYVDTSGY 868
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 140 GSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKP 199
I + SL+ LD+S N ++ + K C + L+ M + T ++ P
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTIFRCLP 420
Query: 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
++ +DL NK + IP Q+ KL ++ LN++ N L V
Sbjct: 421 -PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSV 459
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 30/116 (25%)
Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK-HLAIGCFNLEYLVESLMF 186
L L LS N FD + +++ F L+H + G + K HL +GC
Sbjct: 300 LKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKKLHLGVGCL----------- 343
Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGE--IPPQIGKLTRVRALNLSHNNLTGV 240
+ L + +DLS N + Q+ L+ ++ LNLSHN G+
Sbjct: 344 -----------EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 71/271 (26%)
Query: 1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
+ IS L L NL+EL++ +++ P L N+T L+L N N+S L
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGAN---HNLSDLSPLSNX 154
Query: 61 TSIEYLS---------------------TLNY--------LVLVSMLHFPNSFTITMSWR 91
T + YL+ +LNY L ++ LH+ FT ++
Sbjct: 155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY---FTAYVNQI 211
Query: 92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNS 151
P+ + L +L + PL +L +L + N+ S +++ DL
Sbjct: 212 TDITPVANXTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQI--SDINAVKDLTK 266
Query: 152 LKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN 211
LK L++ NQ++ I N L+++ + L+ N
Sbjct: 267 LKXLNVGSNQISD-------ISVLN----------------------NLSQLNSLFLNNN 297
Query: 212 KLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
+L E IG LT + L LS N++T + P
Sbjct: 298 QLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT-----RNISSSP 55
+ I+ L L L ++ M N + P L N+T+L L L+ NQ+T +N+++
Sbjct: 75 LTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 56 LLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF-------RMPIQSH-----WH 102
L L + +I +S L+ L + L+F N T +P R+ I S+
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLNFGNQVT---DLKPLANLTTLERLDISSNKVSDISV 189
Query: 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNS---LKFLDLSH 159
LA L + N +I P + NL +G+ IG L S L LDL++
Sbjct: 190 LAKLTNLESLIATNN--QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 160 NQLTGEIP 167
NQ++ P
Sbjct: 248 NQISNLAP 255
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT-----RNISSSP 55
+ I+ L L L ++ M N + P L N+T+L L L+ NQ+T +N+++
Sbjct: 75 LTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 56 LLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF-------RMPIQSH-----WH 102
L L + +I +S L+ L + L+F N T +P R+ I S+
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLNFGNQVT---DLKPLANLTTLERLDISSNKVSDISV 189
Query: 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNS---LKFLDLSH 159
LA L + N +I P + NL +G+ IG L S L LDL++
Sbjct: 190 LAKLTNLESLIATNN--QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 160 NQLTGEIP 167
NQ++ P
Sbjct: 248 NQISNLAP 255
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 102 HLATLYVSKKFFQGNIPLEIGVY--FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159
+L TL+V+ Q L IGV+ L L L RN+ P L L +L L +
Sbjct: 86 NLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 160 NQLTGEIPK 168
N+L +PK
Sbjct: 143 NELQS-LPK 150
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 53 SSPLLHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111
S P + ++ +I Y LN+ + L F ++ + +SW P R HL S
Sbjct: 2 SEPCVEVVPNITYQCMELNFYKIPDNLPF-STKNLDLSWNPLR-------HLG----SYS 49
Query: 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171
FF FP L L+LSR E +I D LS LTG + LA
Sbjct: 50 FFS----------FPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 172 IGCFN 176
+G F+
Sbjct: 95 LGAFS 99
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 54 SPLLHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112
SP + ++ +I Y LN+ + L F ++ + +SW P R HL S F
Sbjct: 2 SPCVEVVPNITYQCMELNFYKIPDNLPF-STKNLDLSWNPLR-------HLG----SYSF 49
Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
F FP L L+LSR E +I D LS LTG + LA+
Sbjct: 50 FS----------FPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLAL 94
Query: 173 GCFN 176
G F+
Sbjct: 95 GAFS 98
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 142 IPSSIGD-LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKE-TSYSYKGK- 198
+P S L SL+FLDLS N + E K+ A C +++L+ + S G+
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA--CKGAWPSLQTLVLSQNHLRSMQKTGEI 408
Query: 199 --PLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV---IPS----LDVSYN 249
L + +D+S N +P ++R LNLS + V IP LDVS N
Sbjct: 409 LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 467
Query: 250 NLNG 253
NL+
Sbjct: 468 NLDS 471
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 89
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 125 FPRLMYLNLSRNEF-----DGSIPSSIGDLNSLKFLDLSHNQL 162
+ RL LNL R E DG++P L LDLSHNQL
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,678,441
Number of Sequences: 62578
Number of extensions: 312647
Number of successful extensions: 932
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 259
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)