Query 048681
Match_columns 266
No_of_seqs 110 out of 1927
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.5E-25 3.3E-30 213.6 14.3 171 9-183 138-316 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.6E-25 5.7E-30 211.9 15.4 222 9-238 116-345 (968)
3 KOG4194 Membrane glycoprotein 99.9 5E-24 1.1E-28 181.6 3.7 251 6-262 168-439 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.4E-23 1.4E-27 174.9 5.8 238 4-265 95-343 (873)
5 KOG0444 Cytoskeletal regulator 99.8 8.6E-21 1.9E-25 163.6 0.2 248 9-266 5-294 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 1.2E-19 2.6E-24 156.6 2.0 240 3-252 95-375 (1255)
7 KOG0472 Leucine-rich repeat pr 99.7 2.5E-20 5.4E-25 152.9 -6.1 236 12-262 46-297 (565)
8 KOG0472 Leucine-rich repeat pr 99.7 1.8E-20 4E-25 153.6 -9.2 234 6-252 63-310 (565)
9 KOG0617 Ras suppressor protein 99.7 1.7E-19 3.7E-24 132.2 -3.5 160 32-242 30-190 (264)
10 PRK15387 E3 ubiquitin-protein 99.7 2.6E-16 5.6E-21 143.3 13.5 217 11-265 222-447 (788)
11 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 156.0 -4.7 162 97-265 260-432 (1081)
12 PLN03210 Resistant to P. syrin 99.7 2E-15 4.4E-20 145.7 15.5 248 4-266 581-872 (1153)
13 PRK15370 E3 ubiquitin-protein 99.7 3.4E-16 7.4E-21 143.0 9.0 204 12-262 200-410 (754)
14 PLN03210 Resistant to P. syrin 99.6 4.4E-15 9.6E-20 143.4 13.6 231 5-250 628-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.6 2.4E-15 5.2E-20 137.1 9.7 215 10-261 241-467 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 1.9E-14 4.1E-19 131.7 13.6 203 11-260 178-387 (754)
17 KOG0617 Ras suppressor protein 99.6 7.5E-17 1.6E-21 118.5 -3.8 161 3-171 25-193 (264)
18 KOG4237 Extracellular matrix p 99.6 1.7E-16 3.6E-21 130.2 -2.9 246 14-265 70-348 (498)
19 KOG0618 Serine/threonine phosp 99.5 1.6E-15 3.4E-20 136.1 -0.6 60 9-72 239-298 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.5 9E-16 1.9E-20 128.9 -2.7 144 6-164 46-207 (319)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.8E-15 6.1E-20 125.9 -2.4 229 7-254 19-293 (319)
22 KOG4237 Extracellular matrix p 99.3 1.6E-13 3.4E-18 113.0 -4.2 214 26-265 60-324 (498)
23 KOG0532 Leucine-rich repeat (L 99.2 2.8E-13 6E-18 116.3 -3.2 178 34-242 74-251 (722)
24 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.4E-16 106.3 5.7 197 15-242 97-294 (394)
25 KOG3207 Beta-tubulin folding c 99.2 3E-12 6.5E-17 106.8 0.3 217 8-240 118-341 (505)
26 COG4886 Leucine-rich repeat (L 99.1 8.8E-11 1.9E-15 101.6 7.1 192 38-258 96-296 (394)
27 PF14580 LRR_9: Leucine-rich r 99.1 3.8E-11 8.2E-16 91.0 3.8 114 3-163 11-126 (175)
28 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 105.1 -1.5 142 91-266 88-237 (722)
29 KOG1909 Ran GTPase-activating 99.0 1.4E-11 3E-16 100.2 -3.2 67 99-165 155-228 (382)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5.1E-15 86.7 3.4 126 99-231 17-146 (175)
31 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 93.1 0.2 136 97-242 280-416 (490)
32 PLN03150 hypothetical protein; 98.9 3E-09 6.5E-14 96.9 8.3 109 12-138 419-527 (623)
33 KOG1909 Ran GTPase-activating 98.9 6.2E-11 1.4E-15 96.4 -3.2 229 8-251 27-310 (382)
34 PLN03150 hypothetical protein; 98.9 3.9E-09 8.4E-14 96.2 7.8 106 103-236 420-526 (623)
35 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 4.9E-15 95.7 -1.7 131 16-161 98-233 (505)
36 PF13855 LRR_8: Leucine rich r 98.8 1.7E-09 3.8E-14 67.6 2.3 60 11-72 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.8 8E-09 1.7E-13 64.5 3.6 61 101-162 1-61 (61)
38 KOG1259 Nischarin, modulator o 98.7 5.1E-09 1.1E-13 84.1 1.9 41 125-167 283-323 (490)
39 KOG1859 Leucine-rich repeat pr 98.6 1.8E-09 3.9E-14 95.8 -4.1 175 28-238 102-292 (1096)
40 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.6E-13 88.0 -0.0 197 10-240 71-270 (414)
41 KOG2120 SCF ubiquitin ligase, 98.5 8.6E-10 1.9E-14 88.3 -8.9 135 12-162 186-325 (419)
42 COG5238 RNA1 Ran GTPase-activa 98.4 3.1E-08 6.7E-13 78.6 -1.8 142 97-238 88-255 (388)
43 KOG4658 Apoptotic ATPase [Sign 98.2 2.1E-06 4.6E-11 80.7 6.5 107 10-136 544-652 (889)
44 KOG4658 Apoptotic ATPase [Sign 98.2 5.1E-07 1.1E-11 84.8 2.4 135 5-161 517-653 (889)
45 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 50.2 3.2 38 11-49 1-38 (44)
46 KOG0531 Protein phosphatase 1, 98.2 1.3E-07 2.8E-12 82.4 -2.3 210 10-252 48-268 (414)
47 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 50.3 2.5 39 201-240 1-39 (44)
48 COG5238 RNA1 Ran GTPase-activa 98.1 7.4E-07 1.6E-11 70.9 0.7 130 5-164 86-228 (388)
49 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.5E-12 67.8 -3.4 69 100-171 52-120 (177)
50 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.5E-11 70.7 -0.2 202 34-238 70-290 (418)
51 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.8E-11 70.4 -0.2 195 33-242 43-266 (418)
52 KOG2120 SCF ubiquitin ligase, 97.9 5.1E-08 1.1E-12 78.3 -8.9 139 97-236 206-349 (419)
53 KOG1859 Leucine-rich repeat pr 97.9 1.3E-07 2.8E-12 84.4 -7.6 117 126-251 164-291 (1096)
54 PRK15386 type III secretion pr 97.9 7E-05 1.5E-09 64.1 8.6 57 8-72 49-105 (426)
55 KOG1644 U2-associated snRNP A' 97.7 6.9E-05 1.5E-09 57.3 5.6 56 12-71 43-98 (233)
56 KOG4579 Leucine-rich repeat (L 97.7 2.3E-06 5E-11 61.3 -2.2 36 200-236 99-134 (177)
57 KOG1644 U2-associated snRNP A' 97.7 5.2E-05 1.1E-09 57.9 4.0 105 102-236 43-151 (233)
58 KOG3665 ZYG-1-like serine/thre 97.4 2.3E-05 5E-10 72.1 -0.7 151 11-181 122-281 (699)
59 KOG3665 ZYG-1-like serine/thre 97.3 7.1E-05 1.5E-09 68.9 1.2 63 99-163 146-208 (699)
60 PRK15386 type III secretion pr 97.3 0.00087 1.9E-08 57.6 6.9 34 33-72 50-83 (426)
61 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.7E-08 47.3 6.6 40 5-45 6-45 (129)
62 KOG2123 Uncharacterized conser 96.9 0.00014 3E-09 58.5 -1.4 101 100-231 18-123 (388)
63 KOG2123 Uncharacterized conser 96.8 4.6E-05 1E-09 61.1 -4.3 59 98-156 60-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00094 2E-08 53.1 2.8 69 3-72 57-127 (260)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.8E-08 52.4 2.3 62 99-163 41-104 (260)
66 KOG4341 F-box protein containi 96.4 3.5E-05 7.6E-10 64.9 -7.8 64 148-211 318-382 (483)
67 KOG4341 F-box protein containi 96.4 7E-05 1.5E-09 63.2 -6.3 231 8-239 161-441 (483)
68 PF13306 LRR_5: Leucine rich r 96.3 0.0079 1.7E-07 43.1 4.6 60 97-159 8-67 (129)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0037 8E-08 29.9 0.3 16 37-53 2-17 (22)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0064 1.4E-07 29.1 1.1 18 203-221 2-19 (22)
71 KOG1947 Leucine rich repeat pr 95.6 0.0018 3.8E-08 57.5 -1.7 30 198-227 359-389 (482)
72 KOG1947 Leucine rich repeat pr 94.2 0.0073 1.6E-07 53.5 -1.7 201 7-237 210-439 (482)
73 PF13504 LRR_7: Leucine rich r 94.1 0.031 6.7E-07 24.8 1.2 13 36-48 2-14 (17)
74 smart00370 LRR Leucine-rich re 93.7 0.062 1.4E-06 26.6 2.0 16 11-26 2-17 (26)
75 smart00369 LRR_TYP Leucine-ric 93.7 0.062 1.4E-06 26.6 2.0 16 11-26 2-17 (26)
76 KOG4308 LRR-containing protein 93.2 0.00037 8E-09 61.6 -11.3 187 13-238 89-303 (478)
77 PF13516 LRR_6: Leucine Rich r 91.7 0.038 8.3E-07 26.9 -0.4 15 35-49 2-16 (24)
78 KOG3864 Uncharacterized conser 89.7 0.045 9.8E-07 42.2 -1.8 86 126-236 101-187 (221)
79 smart00365 LRR_SD22 Leucine-ri 83.3 1.1 2.3E-05 22.3 1.7 15 34-48 1-15 (26)
80 KOG0473 Leucine-rich repeat pr 81.1 0.1 2.2E-06 41.4 -3.8 47 23-72 30-76 (326)
81 KOG0473 Leucine-rich repeat pr 79.4 0.17 3.7E-06 40.1 -2.9 88 6-114 37-124 (326)
82 KOG3864 Uncharacterized conser 78.9 0.87 1.9E-05 35.4 0.7 65 201-265 101-178 (221)
83 smart00368 LRR_RI Leucine rich 77.9 1.9 4.1E-05 21.7 1.6 15 35-49 2-16 (28)
84 smart00364 LRR_BAC Leucine-ric 72.4 2.7 6E-05 20.9 1.3 18 201-219 2-19 (26)
85 KOG3763 mRNA export factor TAP 56.2 5 0.00011 36.0 0.8 40 33-72 216-255 (585)
86 smart00367 LRR_CC Leucine-rich 54.2 9.3 0.0002 18.6 1.3 12 35-46 2-13 (26)
87 KOG3763 mRNA export factor TAP 43.2 12 0.00027 33.7 1.1 54 200-253 217-284 (585)
88 TIGR00864 PCC polycystin catio 37.3 23 0.0005 38.4 2.1 33 17-49 1-33 (2740)
89 KOG4308 LRR-containing protein 35.4 1.1 2.3E-05 40.0 -6.6 111 128-238 89-217 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.5e-25 Score=213.60 Aligned_cols=171 Identities=34% Similarity=0.422 Sum_probs=92.1
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF 84 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~ 84 (266)
.+++|++|++++|.+.+..|..|+++++|++|++++|.+++.+|. .+..+ ++|++|++++|.. +..+..++++.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhC-cCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 456666666666666666666666666666666666666655555 55555 6666666666652 23333344443
Q ss_pred eecccC----cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 85 TITMSW----RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 85 ~~~~~~----~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
....+. ..+|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 322222 134445555555666666665555555544443 555555555555555445555555555555555555
Q ss_pred eeeecCCccccccccchhHHHhh
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVES 183 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~ 183 (266)
++.+.+|..+ ..+.+++.+++.
T Consensus 295 ~l~~~~p~~~-~~l~~L~~L~l~ 316 (968)
T PLN00113 295 SLSGEIPELV-IQLQNLEILHLF 316 (968)
T ss_pred eeccCCChhH-cCCCCCcEEECC
Confidence 5554443322 334444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.6e-25 Score=211.94 Aligned_cols=222 Identities=27% Similarity=0.371 Sum_probs=114.3
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF 84 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~ 84 (266)
++++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. .+..+ ++|++|++++|.. +..+..++.+.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcC-CCCCEEECccCcccccCChhhhhCcCCC
Confidence 566666666666666555443 3456666666666666555555 55555 6666666666552 22233334433
Q ss_pred eecccC----cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 85 TITMSW----RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 85 ~~~~~~----~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
.++.+. ..+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 332222 224555566666666666666666555555544 566666666666665555666666666666666666
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
++.+.+|..+ ..+.+++.++++.+..... .+.....+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++
T Consensus 271 ~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 271 KLSGPIPPSI-FSLQKLISLDLSDNSLSGE--IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred eeeccCchhH-hhccCcCEEECcCCeeccC--CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 6654444443 3445555555544432211 1111122344444444444444334444444444444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=5e-24 Score=181.62 Aligned_cols=251 Identities=20% Similarity=0.162 Sum_probs=195.2
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh-------hcc
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV-------SML 78 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~-------~~~ 78 (266)
.|.+-.++++|++++|+|+.....+|+++.+|.+|.|+.|+|+ .+|...|.++ +.|+.|++-+|.+.. ++.
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhc-chhhhhhccccceeeehhhhhcCch
Confidence 4555567888888888888777888888888888888888887 6776355556 888888888888211 222
Q ss_pred CCCCcceecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 048681 79 HFPNSFTITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDL 157 (266)
Q Consensus 79 ~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 157 (266)
++.++-...++...+.+ .|..+.++++|++..|+++ .+..+..-++++|+.|++++|.+....++.+..+++|+.|++
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 22232223444455554 4778899999999999998 566554444999999999999999888999999999999999
Q ss_pred cCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeeccc
Q 048681 158 SHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLSH 234 (266)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~ 234 (266)
++|+++ ..++..+..+..+..|.+..+....+..-.+. .+++|++|||..|.+.+.+. ..|.++++|+.|.+.|
T Consensus 325 s~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 325 SSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred cccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHH--HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 999998 67777778888888888877766555544443 38999999999999886543 3578899999999999
Q ss_pred ccccccC----------CeEEeeCCeeeecCChhhhhc
Q 048681 235 NNLTGVI----------PSLDVSYNNLNGKIPPQLVEL 262 (266)
Q Consensus 235 n~l~~~~----------~~l~l~~n~i~~~~p~~~~~~ 262 (266)
|++...+ +.|||-+|.|..+=|..|..+
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 9998653 389999999998888888766
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.4e-23 Score=174.93 Aligned_cols=238 Identities=23% Similarity=0.242 Sum_probs=157.6
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
++.|.++++|++++|.+|.++ .+|.-.....+|+.|+|.+|.|+..-.+ .+..+ ++|+.||++.|.+
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l-~alrslDLSrN~i---------- 161 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE-ELSAL-PALRSLDLSRNLI---------- 161 (873)
T ss_pred HHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH-HHHhH-hhhhhhhhhhchh----------
Confidence 344556666666666666665 4454333444566666666666532222 44444 6666666666653
Q ss_pred ceecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 84 FTITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 84 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.++|. ++.+-.++++|++++|+++ .+..+-++.+.+|..|.|+.|.++...+..|..+++|+.|++..|++
T Consensus 162 -------s~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 162 -------SEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred -------hcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 22332 3444467889999999997 67777777788899999999999833344566689999999999988
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc--
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV-- 240 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 240 (266)
. .+....|+++.+++.+.+.++....+..-.+.+ +.++++|+|..|.+..--..++.+++.|+.|+++.|-|...
T Consensus 234 r-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 234 R-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred e-eehhhhhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 7 666667788889998888888877666554444 67777777777777644445666777777777777766633
Q ss_pred --------CCeEEeeCCeeeecCChhhhhcccC
Q 048681 241 --------IPSLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 241 --------~~~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
+.+|+|++|+|++--|.+|..+.+|
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 3377777777775555556555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=8.6e-21 Score=163.56 Aligned_cols=248 Identities=25% Similarity=0.327 Sum_probs=194.9
Q ss_pred CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh---ccCCCCcc
Q 048681 9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS---MLHFPNSF 84 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~~~ 84 (266)
=+|-.+-+++++|.++ +..|.....+++++.|.|....+. .+|+ .+..+ ++|++|.+.+|+...- +..+|.+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRL-QKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHH-hhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3566778899999999 679999999999999999999887 6888 88888 9999999999994333 33344433
Q ss_pred e---eccc--CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCCEEEcc
Q 048681 85 T---ITMS--WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLKFLDLS 158 (266)
Q Consensus 85 ~---~~~~--~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~ 158 (266)
. .+++ -..+|.-+.++..|+.|++++|++. .+|..+.. .+++-+|++++|+|. ++|. .+..+..|-+|+++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence 2 2222 2458888999999999999999998 88988876 789999999999998 5664 55688999999999
Q ss_pred CCeeeecCCccccccccchhHHHhhhcccc-----------------------cccccCCCCcCCCCccEEEccCCcccc
Q 048681 159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTT-----------------------KETSYSYKGKPLNKMYGIDLSCNKLVG 215 (266)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~L~~L~L~~n~i~~ 215 (266)
+|++. .+|+++ ..+..++.|+++.+-.+ .....+.....+.+|..+|++.|.+.
T Consensus 159 ~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 159 NNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred cchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 99998 677766 45666666665544221 01112222234678888999999998
Q ss_pred cCCccccccccCCeeeccccccccc---------CCeEEeeCCeeeecCChhhhhcccCC
Q 048681 216 EIPPQIGKLTRVRALNLSHNNLTGV---------IPSLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 216 ~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
.+|+.+-.+++|+.|+|++|+|+.. ++.|+++.|.++ .+|+++++++.|+
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 8999999999999999999999955 448999999998 8999999987663
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.2e-19 Score=156.55 Aligned_cols=240 Identities=23% Similarity=0.261 Sum_probs=170.0
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhc--
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSM-- 77 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~-- 77 (266)
.|+.+.++..|+.|++|+|.+. ..|..+...+++-.|+|++|+|. .||. +++..++.|-.||+++|. .+..+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn-~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPN-SLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCc-hHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 4778889999999999999988 78888888888888888888886 6776 444333777777777766 11111
Q ss_pred ----------------------cCCCCcceec-----ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcE
Q 048681 78 ----------------------LHFPNSFTIT-----MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMY 130 (266)
Q Consensus 78 ----------------------~~~~~~~~~~-----~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 130 (266)
+++..+-.+. -....+|.++..+.+|..++++.|.+. .+|+-+.. +++|..
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~Lrr 249 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRR 249 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhhe
Confidence 1111111111 122457888999999999999999987 88887776 889999
Q ss_pred EEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC
Q 048681 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC 210 (266)
Q Consensus 131 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 210 (266)
|++++|.++ .+......+.+|+.|+++.|+++ .+|..+. .++.++.|....+. .+....+-+.+.+..|+++..++
T Consensus 250 LNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 250 LNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred eccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhc
Confidence 999999997 66667788889999999999998 6777764 34455555544332 12223333444567777888888
Q ss_pred CcccccCCccccccccCCeeecccccccccCC---------eEEeeCCeee
Q 048681 211 NKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---------SLDVSYNNLN 252 (266)
Q Consensus 211 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~ 252 (266)
|.+. .+|+.+..|+.|+.|.|++|++--.|+ .||+..|+-.
T Consensus 326 N~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 326 NKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 8776 788888888888888888887553322 6777777644
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.5e-20 Score=152.88 Aligned_cols=236 Identities=22% Similarity=0.292 Sum_probs=158.0
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCCcceec-
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPNSFTIT- 87 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~~~~~~- 87 (266)
.|..+.++.|.+.. .-..+.++..|.+|++++|.+. ..|. ++.++ .+++.+++++|. .++.+.....++..+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 34556677776663 3344566777777777777766 4565 67776 777777777776 344445555444433
Q ss_pred --ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681 88 --MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 88 --~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
....+++++++++..+..++..+|+++ .+|+.++. +.++..+++.+|.+.. .|+..-.++.|++++...|-++ .
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-c
Confidence 334557778888888888888888887 77777765 6678888888888763 3443334888888888888876 6
Q ss_pred CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccc-cccccCCeeecccccccccCC--
Q 048681 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP-- 242 (266)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-- 242 (266)
+|+.+. .+..++..+...+++..++ .+..+..|.++.++.|.|. .+|... ..++++..||+..|++++.|.
T Consensus 198 lP~~lg----~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 198 LPPELG----GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred CChhhc----chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHH
Confidence 776663 3444444444455555555 3334777888888888776 555544 467778888888888876644
Q ss_pred -------eEEeeCCeeeecCChhhhhc
Q 048681 243 -------SLDVSYNNLNGKIPPQLVEL 262 (266)
Q Consensus 243 -------~l~l~~n~i~~~~p~~~~~~ 262 (266)
+||++.|.|+ .+|.+++++
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc
Confidence 6788888887 678777776
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.8e-20 Score=153.65 Aligned_cols=234 Identities=24% Similarity=0.275 Sum_probs=150.6
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPN 82 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~ 82 (266)
.+.++..|+.+.+.+|.+. ..|.+++.+..++.++++.|++. .+|+ .+..+ ..+.+++.+.|. .+.++..+..
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSL-ISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhh-hhhhhhhccccceeecCchHHHHhh
Confidence 3455666666666666666 55566666666666666666665 4555 55555 566666666655 2222222211
Q ss_pred c---ceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681 83 S---FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 83 ~---~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 159 (266)
+ .........+|..+..+.++..+++.+|++. .+|+.... ++.|++++...|.+. ++|+.++.+.+|..|++..
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence 1 1233344556667777777777777777776 55555554 677777777777665 6777777777777777777
Q ss_pred CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccc
Q 048681 160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239 (266)
Q Consensus 160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 239 (266)
|++. +.| -+.+|..++.+.+..+...-... .....++++.+||+.+|.++ +.|..+.-+++|.+||+++|.+++
T Consensus 216 Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 216 NKIR-FLP--EFPGCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred cccc-cCC--CCCccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 7776 565 23456555555444333222211 11124788999999999998 789888888999999999999998
Q ss_pred cCC--------eEEeeCCeee
Q 048681 240 VIP--------SLDVSYNNLN 252 (266)
Q Consensus 240 ~~~--------~l~l~~n~i~ 252 (266)
.++ .|.+.+|+++
T Consensus 290 Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 290 LPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred CCcccccceeeehhhcCCchH
Confidence 877 6778888876
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.7e-19 Score=132.24 Aligned_cols=160 Identities=29% Similarity=0.438 Sum_probs=136.3
Q ss_pred hcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681 32 ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111 (266)
Q Consensus 32 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n 111 (266)
.++.+++.|.+++|.++ .+|. .+..+ .+|+.|++++|++ +++|.+++++++|+.|+++-|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vpp-nia~l-~nlevln~~nnqi-----------------e~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPP-NIAEL-KNLEVLNLSNNQI-----------------EELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred cchhhhhhhhcccCcee-ecCC-cHHHh-hhhhhhhcccchh-----------------hhcChhhhhchhhhheecchh
Confidence 34677777888888887 4555 67777 7888888888876 667788889999999999999
Q ss_pred cccccCCccccccCCCCcEEEccccccc-ccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccc
Q 048681 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFD-GSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKE 190 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 190 (266)
++. .+|.++++ ++.|++|++.+|.+. ...|..|..+..|+-|.+++|.++ .+|..+.
T Consensus 90 rl~-~lprgfgs-~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg------------------- 147 (264)
T KOG0617|consen 90 RLN-ILPRGFGS-FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG------------------- 147 (264)
T ss_pred hhh-cCccccCC-CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-------------------
Confidence 997 88999887 999999999999996 357888889999999999999998 7887774
Q ss_pred cccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 191 TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.+++|+.|.+.+|.+- ..|..++.+.+|++|.+++|+++-.+|
T Consensus 148 --------~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 148 --------KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred --------hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 3789999999999987 789999999999999999999997766
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=2.6e-16 Score=143.33 Aligned_cols=217 Identities=24% Similarity=0.229 Sum_probs=118.8
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---hccCCCCcceec
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---SMLHFPNSFTIT 87 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~~~~~~~~~~~~ 87 (266)
++|+.|++++|.++. +|. ..++|++|++++|+++ .+|. .+++|+.|++++|.... ....+..+....
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC-----cccccceeeccCCchhhhhhchhhcCEEECcC
Confidence 367777777777773 343 2467788888888777 3443 23677777777776221 111111111122
Q ss_pred ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 167 (266)
+.+..+|. ..++|++|++++|.++ .+|.. ...|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|
T Consensus 292 N~Lt~LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP 358 (788)
T PRK15387 292 NQLTSLPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLP 358 (788)
T ss_pred Cccccccc---cccccceeECCCCccc-cCCCC----cccccccccccCccc-ccccc---ccccceEecCCCccC-CCC
Confidence 23333443 2357888888888887 45542 235667777777775 34431 246788888888887 455
Q ss_pred ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----
Q 048681 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----- 242 (266)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----- 242 (266)
... .++..|++..+....++. .+..|+.|++++|.++ .+|.. .++|+.|++++|.+++.+.
T Consensus 359 ~lp----~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L 424 (788)
T PRK15387 359 TLP----SELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGL 424 (788)
T ss_pred CCC----cccceehhhccccccCcc------cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhh
Confidence 322 244445544443332221 1245666666666666 34432 2356666666666654322
Q ss_pred -eEEeeCCeeeecCChhhhhcccC
Q 048681 243 -SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 243 -~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|++++|.|+ .+|.++.++..|
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCC
Confidence 4555555555 455555554443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=156.04 Aligned_cols=162 Identities=26% Similarity=0.356 Sum_probs=103.5
Q ss_pred cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccc-c
Q 048681 97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC-F 175 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~ 175 (266)
++.+.+|+.+.+..|+++ .+|..++. ..+|+.+...+|.+. .+|......++|+.|++..|++. ..|+.++... .
T Consensus 260 i~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA 335 (1081)
T ss_pred HHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence 333334444444444442 33333333 334444444444443 45666667788888888888887 5555443222 1
Q ss_pred chhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc----------CCeEE
Q 048681 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV----------IPSLD 245 (266)
Q Consensus 176 ~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~l~ 245 (266)
.+..+..+.+.....+ .......+.|+.|.+.+|.+++.+-+.+.++++||.|+|++|++... +++|+
T Consensus 336 ~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred HHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 2333333333333333 22223478899999999999988777789999999999999998844 33999
Q ss_pred eeCCeeeecCChhhhhcccC
Q 048681 246 VSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 246 l~~n~i~~~~p~~~~~~~~l 265 (266)
||+|+++ .+|+++.++..|
T Consensus 414 LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred cccchhh-hhhHHHHhhhhh
Confidence 9999999 899999988876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=2e-15 Score=145.73 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=145.4
Q ss_pred CccccCC-CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---hccC
Q 048681 4 ISGLFRL-RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---SMLH 79 (266)
Q Consensus 4 ~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~~~~ 79 (266)
|++|..+ ++|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++. ++..+ ++|+.|+++++.... .+..
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~-~~~~l-~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD-GVHSL-TGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc-ccccC-CCCCEEECCCCCCcCcCCcccc
Confidence 3445444 35777777777766 556655 3577777777777776 4555 55555 777777777664222 2222
Q ss_pred CCCccee----cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEE
Q 048681 80 FPNSFTI----TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFL 155 (266)
Q Consensus 80 ~~~~~~~----~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 155 (266)
++++..+ ...+..+|.++..+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 3333222 22346678888888888889888876555777654 3778888888888655444432 3577888
Q ss_pred EccCCeeeecCCccccccccchhHHHhhhcccc-----------------------------cccccCCCCcCCCCccEE
Q 048681 156 DLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT-----------------------------KETSYSYKGKPLNKMYGI 206 (266)
Q Consensus 156 ~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~L~~L 206 (266)
++++|.+. .+|... .+.++..|.+..+... .....+.....+++|+.|
T Consensus 731 ~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 731 DLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred ecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 88888776 455432 2333333333221110 011122223345666666
Q ss_pred EccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeeecCChhhhhcccCC
Q 048681 207 DLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 207 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
++++|..-+.+|..+ .+++|+.|++++|.....+| +|++++|.|. .+|.++..+++|+
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence 666654322455443 45666666666654333222 7888888887 7888777766653
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=3.4e-16 Score=143.02 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=108.1
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR 91 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (266)
.|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|. .+ +..|+.|++++|.+ .
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l---~~~L~~L~Ls~N~L-----------------~ 254 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL---PDTIQEMELSINRI-----------------T 254 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh---hccccEEECcCCcc-----------------C
Confidence 4555556555555 2333332 35566666665555 3343 22 23455555555542 2
Q ss_pred ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681 92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 171 (266)
.+|..+. ..|+.|++++|++. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~ 324 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP 324 (754)
T ss_pred cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc
Confidence 2232221 35666666666665 4554432 35666666666665 3443322 35666666666665 3443332
Q ss_pred ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eE
Q 048681 172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SL 244 (266)
Q Consensus 172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l 244 (266)
.+++.|++..+....++. ..+++|+.|++++|.++ .+|..+. ++|+.|++++|.+++.++ .|
T Consensus 325 ---~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~L 393 (754)
T PRK15370 325 ---PGLKTLEAGENALTSLPA-----SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLPAALQIM 393 (754)
T ss_pred ---ccceeccccCCccccCCh-----hhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHHH
Confidence 344555554443332221 11356777777777776 4565442 567777777777775544 56
Q ss_pred EeeCCeeeecCChhhhhc
Q 048681 245 DVSYNNLNGKIPPQLVEL 262 (266)
Q Consensus 245 ~l~~n~i~~~~p~~~~~~ 262 (266)
++++|.+. .+|.++.++
T Consensus 394 dLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 394 QASRNNLV-RLPESLPHF 410 (754)
T ss_pred hhccCCcc-cCchhHHHH
Confidence 77777776 566655443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=4.4e-15 Score=143.39 Aligned_cols=231 Identities=20% Similarity=0.217 Sum_probs=137.5
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhcc---CCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSML---HFP 81 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~---~~~ 81 (266)
+++..+++|++++++++.....+|. +..+++|++|++++|.....+|. .+..+ ++|+.|++++|.....+. .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L-~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYL-NKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhcc-CCCCEEeCCCCCCcCccCCcCCCC
Confidence 4455667777777766543334443 56667777777776655445665 56555 666667666654221111 122
Q ss_pred Ccceecc----cCcccccCcccccCccEEEccCccccccCCccc-----------------------------cccCCCC
Q 048681 82 NSFTITM----SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI-----------------------------GVYFPRL 128 (266)
Q Consensus 82 ~~~~~~~----~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------~~~~~~L 128 (266)
.+..+.. .+..+|.. ..+|++|++++|.+. .+|..+ ....++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 2211111 11112211 234555555555543 333211 1113578
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEc
Q 048681 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDL 208 (266)
Q Consensus 129 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 208 (266)
+.|++++|.....+|..+..+++|+.|++++|...+.+|... .+.+++.++++.+...... +..+.+|+.|++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~L 853 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTF-----PDISTNISDLNL 853 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccc-----cccccccCEeEC
Confidence 888888887666788888899999999998875433666554 4667777777765432211 112467889999
Q ss_pred cCCcccccCCccccccccCCeeeccccc-ccccCC---------eEEeeCCe
Q 048681 209 SCNKLVGEIPPQIGKLTRVRALNLSHNN-LTGVIP---------SLDVSYNN 250 (266)
Q Consensus 209 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------~l~l~~n~ 250 (266)
++|.++ .+|..+..+++|+.|++.+|+ +.+.++ .+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999988 788888889999999998864 444322 56666665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=2.4e-15 Score=137.08 Aligned_cols=215 Identities=21% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee---
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI--- 86 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~--- 86 (266)
+++|++|++++|.++. +|.. .++|++|++++|.++. +|. .+.+|+.|++++|.+..-....+.+..+
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~-----lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS 310 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 310 (788)
T ss_pred CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhh-----chhhcCEEECcCCccccccccccccceeECC
Confidence 5789999999999984 4532 3577777777777652 322 2345556666665521111111122111
Q ss_pred cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681 87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 166 (266)
.+.+..+|... ..|+.|++++|.++ .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+
T Consensus 311 ~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~L 377 (788)
T PRK15387 311 DNQLASLPALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SL 377 (788)
T ss_pred CCccccCCCCc---ccccccccccCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cC
Confidence 12222233211 23555666666665 34431 235666666666665 33432 234555666666665 34
Q ss_pred CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681 167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---- 242 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 242 (266)
|... .++..+++..+....++. .++.|+.|++++|.++ .+|.. ..+|+.|++++|.++..+.
T Consensus 378 P~l~----~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~ 443 (788)
T PRK15387 378 PALP----SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIH 443 (788)
T ss_pred cccc----cccceEEecCCcccCCCC------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhh
Confidence 4321 234444444433322111 1245666666666665 35542 2345566666666663322
Q ss_pred -----eEEeeCCeeeecCChhhhh
Q 048681 243 -----SLDVSYNNLNGKIPPQLVE 261 (266)
Q Consensus 243 -----~l~l~~n~i~~~~p~~~~~ 261 (266)
.|++++|++.+.+|..+..
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCeEECCCCCCCchHHHHHHH
Confidence 4666666666666665543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.9e-14 Score=131.67 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=154.1
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
.+.+.|+++++.++ .+|..+. ++|+.|++++|+++ .+|. .+ +.+|++|++++|..
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~-~l---~~nL~~L~Ls~N~L----------------- 232 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPE-NL---QGNIKTLYANSNQL----------------- 232 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCCh-hh---ccCCCEEECCCCcc-----------------
Confidence 46788999999998 5566554 58999999999998 5665 33 26899999998863
Q ss_pred cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 170 (266)
..+|..+ ...|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 233 tsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l 302 (754)
T PRK15370 233 TSIPATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL 302 (754)
T ss_pred ccCChhh--hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc
Confidence 2233332 246999999999998 7887654 47999999999997 6676553 58999999999998 566554
Q ss_pred cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------e
Q 048681 171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------S 243 (266)
Q Consensus 171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~ 243 (266)
. .++..+++..+....++. ..+++|+.|++++|.++ .+|..+. ++|+.|++++|+++..+. .
T Consensus 303 p---~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~ 371 (754)
T PRK15370 303 P---SGITHLNVQSNSLTALPE-----TLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTITT 371 (754)
T ss_pred h---hhHHHHHhcCCccccCCc-----cccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCcCE
Confidence 3 367777777665543321 12468999999999998 5776553 799999999999884322 8
Q ss_pred EEeeCCeeeecCChhhh
Q 048681 244 LDVSYNNLNGKIPPQLV 260 (266)
Q Consensus 244 l~l~~n~i~~~~p~~~~ 260 (266)
|++++|.+. .+|+.+.
T Consensus 372 LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 372 LDVSRNALT-NLPENLP 387 (754)
T ss_pred EECCCCcCC-CCCHhHH
Confidence 999999998 6787663
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.5e-17 Score=118.45 Aligned_cols=161 Identities=26% Similarity=0.423 Sum_probs=134.7
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccC
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLH 79 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~ 79 (266)
..+++.++.+.+.|.+++|.++ .+|..|+.+.+|+.|++++|+|+ ..|. ++..+ ++|+.|++.-|. .+.++.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl-~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSL-PKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhc-hhhhheecchhhhhcCccccCC
Confidence 4556677788888999999998 56777999999999999999998 5787 88888 999999998887 5677788
Q ss_pred CCCcceec---ccC--cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681 80 FPNSFTIT---MSW--RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF 154 (266)
Q Consensus 80 ~~~~~~~~---~~~--~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 154 (266)
+|.+-.++ .++ ..+|+.|.-++-|+.|++++|.+. .+|+.++. +++|+.|.+..|.+- ..|..++.+..|++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 88764322 222 458899999999999999999998 88988887 899999999999987 78999999999999
Q ss_pred EEccCCeeeecCCcccc
Q 048681 155 LDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 155 L~l~~n~~~~~~~~~~~ 171 (266)
|.+.+|+++ .+|+.+.
T Consensus 178 lhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELA 193 (264)
T ss_pred Hhcccceee-ecChhhh
Confidence 999999998 6665553
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=1.7e-16 Score=130.21 Aligned_cols=246 Identities=17% Similarity=0.125 Sum_probs=133.8
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhccccccccccc-chh---hhhc-cCCC---Ccce
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLN-YLV---LVSM-LHFP---NSFT 85 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~-~~~---~~~~-~~~~---~~~~ 85 (266)
+++.+..|.|+.+.+.+|..+++|+.|||++|+|+...|. +|..+ ..+..|-+.+ |.+ +.+. .++. .+..
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4556666666666666666666666666666666544444 55555 4444444444 321 1111 1111 1111
Q ss_pred ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc------------ccCCccccCCCCC
Q 048681 86 ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD------------GSIPSSIGDLNSL 152 (266)
Q Consensus 86 ~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------~~~~~~l~~l~~L 152 (266)
..+.+++++ +.+.+++++..|.+.+|.+. .++.+.+..+..++.+-+..|.+- ...|-.++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 222223333 44667777777888887776 666655555667777766665521 1122223333333
Q ss_pred CEEEccCCeeeecCCccccccccchhHHHhhhccccccc--ccCCCCcCCCCccEEEccCCcccccCCccccccccCCee
Q 048681 153 KFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET--SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRAL 230 (266)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 230 (266)
....+.+.++. ..++.-+.. .++.+........... .-...+..++.|+.|+|++|.+++.-+.+|.....+++|
T Consensus 227 ~p~rl~~~Ri~-q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 227 SPYRLYYKRIN-QEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred chHHHHHHHhc-ccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 33334444433 121111111 1111111111111010 001112347899999999999996667789999999999
Q ss_pred eccccccccc----------CCeEEeeCCeeeecCChhhhhcccC
Q 048681 231 NLSHNNLTGV----------IPSLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 231 ~l~~n~l~~~----------~~~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|..|++..+ +..|+|.+|.|+...|..|..+.+|
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 9999998733 3389999999998888888776654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=1.6e-15 Score=136.08 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
...+|++++++.+.+. .+|+.+..+.+|+.++..+|.++ .+|. .+... ++|+.|...+|.
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~-~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRI-TSLVSLSAAYNE 298 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhh-hhHHHHHhhhhh
Confidence 3456778888888887 45677888888888888888886 5676 67777 888888888887
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=9e-16 Score=128.87 Aligned_cols=144 Identities=23% Similarity=0.183 Sum_probs=91.0
Q ss_pred cccCCCCCcEEECCCccCcc------CCChhhhcCCCCcEEeccCCcccccCCCCcchhhccc---ccccccccchhhhh
Q 048681 6 GLFRLRNLQELHMGANDLRG------TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS---IEYLSTLNYLVLVS 76 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~---L~~L~~~~~~~~~~ 76 (266)
.+...+.+++++++++.+.. .++..+..+++|+.|++++|.+....+. .+..+ .. |+.|++++|.....
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-VLESL-LRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-HHHHH-hccCcccEEEeeCCccchH
Confidence 34567789999999887762 2345677788999999999988754444 55555 44 99999988863210
Q ss_pred ccCCCCcceecccCcccccCcccc-cCccEEEccCccccccC----CccccccCCCCcEEEccccccccc----CCcccc
Q 048681 77 MLHFPNSFTITMSWRPFRMPIQSH-WHLATLYVSKKFFQGNI----PLEIGVYFPRLMYLNLSRNEFDGS----IPSSIG 147 (266)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~ 147 (266)
. ...+...+..+ ++|++|++++|.+++.. +..+. .+++|++|++++|.+.+. ++..+.
T Consensus 124 ~------------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 190 (319)
T cd00116 124 G------------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLK 190 (319)
T ss_pred H------------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHH
Confidence 0 01112223444 67788888888776321 11222 245788888888777522 233344
Q ss_pred CCCCCCEEEccCCeeee
Q 048681 148 DLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 148 ~l~~L~~L~l~~n~~~~ 164 (266)
..++|+.|++++|.+++
T Consensus 191 ~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 191 ANCNLEVLDLNNNGLTD 207 (319)
T ss_pred hCCCCCEEeccCCccCh
Confidence 55678888888877653
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.8e-15 Score=125.85 Aligned_cols=229 Identities=24% Similarity=0.206 Sum_probs=151.2
Q ss_pred ccCCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccc------cCCCCcchhhcccccccccccchhhhh
Q 048681 7 LFRLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTR------NISSSPLLHLITSIEYLSTLNYLVLVS 76 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~~~~~~L~~L~~~~~~~~~~ 76 (266)
|..++.|++++++++.++.. ++..+...+.+++++++++.+.+ .++. .+..+ ++|+.|+++++.....
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKG-CGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhc-CceeEEEccCCCCChh
Confidence 34567799999999998543 44555677889999999998762 1122 34444 7999999988873211
Q ss_pred ccCCCCcceecccCcccccCcccc---cCccEEEccCcccccc----CCccccccC-CCCcEEEcccccccc----cCCc
Q 048681 77 MLHFPNSFTITMSWRPFRMPIQSH---WHLATLYVSKKFFQGN----IPLEIGVYF-PRLMYLNLSRNEFDG----SIPS 144 (266)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~---~~L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~ 144 (266)
.+..+..+ ++|++|++++|++.+. +...+.. + ++|+.+++++|.+++ .++.
T Consensus 97 ----------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 97 ----------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred ----------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHHHHHHH
Confidence 11112222 4599999999988732 2222333 4 789999999999873 2344
Q ss_pred cccCCCCCCEEEccCCeeeecCCcccc---ccccchhHHHhhhccccccc--ccCCCCcCCCCccEEEccCCcccccCCc
Q 048681 145 SIGDLNSLKFLDLSHNQLTGEIPKHLA---IGCFNLEYLVESLMFTTKET--SYSYKGKPLNKMYGIDLSCNKLVGEIPP 219 (266)
Q Consensus 145 ~l~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 219 (266)
.+..+++|+.|++++|.+++.....+. ..+.+++.+++..+...+.. ........+++|+.|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 566778999999999998743222222 23347777777766544332 2223334568899999999988753333
Q ss_pred ccc-----ccccCCeeecccccccc--c------------CCeEEeeCCeeeec
Q 048681 220 QIG-----KLTRVRALNLSHNNLTG--V------------IPSLDVSYNNLNGK 254 (266)
Q Consensus 220 ~~~-----~l~~L~~L~l~~n~l~~--~------------~~~l~l~~n~i~~~ 254 (266)
.+. ..+.|++|++.+|.++. . +..+++++|.+..+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 222 23789999999998861 1 22899999998754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-13 Score=113.02 Aligned_cols=214 Identities=21% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccE
Q 048681 26 TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT 105 (266)
Q Consensus 26 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 105 (266)
.+|..+. +.-..++|..|.|+ .+|..+|..+ .+|+.||+++|++..- -|+.|.-++.+.+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l-~~LRrLdLS~N~Is~I----------------~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTL-HRLRRLDLSKNNISFI----------------APDAFKGLASLLS 119 (498)
T ss_pred cCcccCC--CcceEEEeccCCcc-cCChhhccch-hhhceecccccchhhc----------------ChHhhhhhHhhhH
Confidence 3444433 45678999999998 5777577777 9999999999994111 1333444455555
Q ss_pred EEccC-ccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhh
Q 048681 106 LYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184 (266)
Q Consensus 106 L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~ 184 (266)
|.+.+ |+++ .+|...+..+..++.|.+.-|.+.-...+++..++++..|.+..|.+. .++...++.+.+++.+-.-.
T Consensus 120 Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 120 LVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhc
Confidence 44444 6666 566666655666666666666665333455666666666666666665 45554444444444433221
Q ss_pred cc------------------------------------cccccccCCCCcCCCCccEE---EccCCcccccCCc-ccccc
Q 048681 185 MF------------------------------------TTKETSYSYKGKPLNKMYGI---DLSCNKLVGEIPP-QIGKL 224 (266)
Q Consensus 185 ~~------------------------------------~~~~~~~~~~~~~~~~L~~L---~L~~n~i~~~~~~-~~~~l 224 (266)
+. .+..+...+ ...++.+ -.+.+...+..|. .|..+
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf----~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF----LCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh----hhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 11 011111000 1112222 1223333334443 48899
Q ss_pred ccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 225 TRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
++|++|++++|+++++-+ +|.|..|.|.-.-..-|.++.+|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 999999999999996633 89999999874333444555444
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.8e-13 Score=116.27 Aligned_cols=178 Identities=24% Similarity=0.287 Sum_probs=135.5
Q ss_pred CCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccc
Q 048681 34 ITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFF 113 (266)
Q Consensus 34 l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~ 113 (266)
+..-...|++.|++. .+|. .+..+ -.|+.+.+..|.+ ..+|..+..+..|++++++.|++
T Consensus 74 ltdt~~aDlsrNR~~-elp~-~~~~f-~~Le~liLy~n~~-----------------r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPE-EACAF-VSLESLILYHNCI-----------------RTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccchhhhhccccccc-cCch-HHHHH-HHHHHHHHHhccc-----------------eecchhhhhhhHHHHhhhccchh
Confidence 455566788888876 5776 66666 6777777776654 45677777788888888888888
Q ss_pred cccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccccc
Q 048681 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY 193 (266)
Q Consensus 114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 193 (266)
+ .+|..++. + -|+.|.+++|.+. .+|..++..+.|..|+.+.|++. .+|..+ .++.++..+.+.+++...+.+.
T Consensus 134 S-~lp~~lC~-l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql-~~l~slr~l~vrRn~l~~lp~E 207 (722)
T KOG0532|consen 134 S-HLPDGLCD-L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-GYLTSLRDLNVRRNHLEDLPEE 207 (722)
T ss_pred h-cCChhhhc-C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh-hhHHHHHHHHHhhhhhhhCCHH
Confidence 7 88888775 3 6888888888886 77877777788888888888887 566665 4666777777777766655543
Q ss_pred CCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 194 SYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 194 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.- .=.|..||++.|++. .+|-.|..|+.|++|-|.+|++.+.+.
T Consensus 208 l~----~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 208 LC----SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred Hh----CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 32 235889999999998 899999999999999999999986544
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.6e-11 Score=106.31 Aligned_cols=197 Identities=28% Similarity=0.339 Sum_probs=97.4
Q ss_pred EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcc-cccccccccchhhhhccCCCCcceecccCccc
Q 048681 15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
.+..+.+.+. .....+..++.++.|++.+|+++. ++. ..... . +|+.|+++.|.+ ..+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~~-~~~~~-~~nL~~L~l~~N~i-----------------~~l 155 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IPP-LIGLL-KSNLKELDLSDNKI-----------------ESL 155 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCccccc-Ccc-ccccc-hhhcccccccccch-----------------hhh
Confidence 3555555553 122334445566666666666653 332 22222 2 566666666653 112
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccccc
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 173 (266)
|..+..++.|+.|+++.|++. .+|..... .++|+.|++++|.+. .+|........|+++.+++|+.. ..+..+ ..
T Consensus 156 ~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~-~~ 230 (394)
T COG4886 156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL-SN 230 (394)
T ss_pred hhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh-hh
Confidence 223344455555555555554 44433222 445555555555554 34444334444555555555322 111111 11
Q ss_pred ccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 174 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
+.++..+.+..+... ........++.++.|+++.|.++ .++. ++...+++.+++++|.++..++
T Consensus 231 ~~~l~~l~l~~n~~~---~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLE---DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceee---eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 222222221111111 10122223667888999998888 4554 7888889999998888775544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-12 Score=106.76 Aligned_cols=217 Identities=18% Similarity=0.086 Sum_probs=150.1
Q ss_pred cCCCCCcEEECCCccCccCCC--hhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681 8 FRLRNLQELHMGANDLRGTLP--WCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 8 ~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
+++.+|+++.+.++.+. ..+ +....+++++.|||+.|-++.-.+.-.|...++.|+.|+++.|.......+..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 47889999999999887 333 36678999999999999876532221344444999999999987322211100
Q ss_pred ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681 86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
-..+.+++.|.+++|.++..--..+...+|.|+.|++.+|..-.........+..|+.|++++|.+.+.
T Consensus 193 -----------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 193 -----------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred -----------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 124578999999999998543344444589999999999952212233345667899999999998754
Q ss_pred CCccccccccchhHHHhhhcccccccccCCCC----cCCCCccEEEccCCcccc-cCCccccccccCCeeeccccccccc
Q 048681 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKG----KPLNKMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
........++.+..+.++.++...+....-.. ..+++|++|++..|.+.+ .....+.-+++|+.|.+..|+++..
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 33334456777777877777776665443311 237899999999999863 2334566778889998888888743
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=8.8e-11 Score=101.65 Aligned_cols=192 Identities=31% Similarity=0.416 Sum_probs=139.8
Q ss_pred cEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCccccc-CccEEEccCcccccc
Q 048681 38 KVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHW-HLATLYVSKKFFQGN 116 (266)
Q Consensus 38 ~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~n~~~~~ 116 (266)
+.+++..+.+...+. .+... +.+..|++.++.+ ..++....... +|+.|+++.|.+. .
T Consensus 96 ~~l~~~~~~~~~~~~--~~~~~-~~l~~L~l~~n~i-----------------~~i~~~~~~~~~nL~~L~l~~N~i~-~ 154 (394)
T COG4886 96 PSLDLNLNRLRSNIS--ELLEL-TNLTSLDLDNNNI-----------------TDIPPLIGLLKSNLKELDLSDNKIE-S 154 (394)
T ss_pred ceeeccccccccCch--hhhcc-cceeEEecCCccc-----------------ccCccccccchhhcccccccccchh-h
Confidence 368888888743222 34454 6788888888774 34455555564 8999999999998 6
Q ss_pred CCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCC
Q 048681 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK 196 (266)
Q Consensus 117 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 196 (266)
+|..+.. +++|+.|++++|++. .++......++|+.+++++|++. .+|... .....+..+.+..+.. ......
T Consensus 155 l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~---~~~~~~ 227 (394)
T COG4886 155 LPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSI---IELLSS 227 (394)
T ss_pred hhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcc---eecchh
Confidence 6545555 899999999999998 66766668999999999999998 666543 2233467777766641 112222
Q ss_pred CcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeecCChh
Q 048681 197 GKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQ 258 (266)
Q Consensus 197 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~~p~~ 258 (266)
......+..+.+..|.+. ..+..+..++.++.|++++|.++...+ .|++++|.+....|..
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence 233677888888888887 457778889999999999999986643 8999999988554443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.8e-11 Score=90.96 Aligned_cols=114 Identities=27% Similarity=0.313 Sum_probs=35.3
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhh-cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLE-NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 81 (266)
..+.+-+..++++|++.+|.|..+ +.++ .+.+|+.|++++|.|+. +. ++.
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~--~l~------------------------ 61 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE--GLP------------------------ 61 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S---T--T--------------------------
T ss_pred cccccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc--Ccc------------------------
Confidence 445556666777888888877743 2344 46778888888887763 22 222
Q ss_pred CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCC
Q 048681 82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n 160 (266)
.++.|++|++++|+++ .++..+...+++|+.|++.+|.+... ....+..+++|+.|++.+|
T Consensus 62 -----------------~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 62 -----------------GLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -------------------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred -----------------ChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 3456777777777776 55444433467788888888877532 2345667788888888888
Q ss_pred eee
Q 048681 161 QLT 163 (266)
Q Consensus 161 ~~~ 163 (266)
.+.
T Consensus 124 Pv~ 126 (175)
T PF14580_consen 124 PVC 126 (175)
T ss_dssp GGG
T ss_pred ccc
Confidence 776
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2e-11 Score=105.06 Aligned_cols=142 Identities=29% Similarity=0.472 Sum_probs=116.5
Q ss_pred cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 170 (266)
.++|..++.+..|+.+.++.|.+. .+|..++. +..|+.++++.|+++ ..|..+..++ |+.|.+++|+++ .+|+.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~i 162 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEI 162 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccc
Confidence 567777888899999999999997 78888877 889999999999998 8898888888 999999999998 677766
Q ss_pred cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------
Q 048681 171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------- 242 (266)
Q Consensus 171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 242 (266)
. . ..+|..||.+.|.+. .+|..++++.+|+.|++..|++...++
T Consensus 163 g-~--------------------------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi 214 (722)
T KOG0532|consen 163 G-L--------------------------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLI 214 (722)
T ss_pred c-c--------------------------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCcee
Confidence 3 2 566777778888777 677777888888888888887776655
Q ss_pred eEEeeCCeeeecCChhhhhcccCC
Q 048681 243 SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 243 ~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
.||++.|+++ .+|-+|.+++.|+
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred eeecccCcee-ecchhhhhhhhhe
Confidence 6888888887 7888888887664
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-11 Score=100.15 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=40.2
Q ss_pred cccCccEEEccCcccccc---CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeec
Q 048681 99 SHWHLATLYVSKKFFQGN---IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
.-++|+.+..+.|++... .-+..+...+.|+.+.+..|.+... ....+..++.|+.|++.+|.++..
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 445677777777776521 1112223356777777777777421 223466777777777777777643
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.3e-10 Score=86.68 Aligned_cols=126 Identities=25% Similarity=0.267 Sum_probs=35.3
Q ss_pred cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchh
Q 048681 99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 178 (266)
+..++++|++.+|.++ .+. .+...+.+|+.|++++|.+.. + ..+..++.|+.|++++|+++ .+.+.+...+++++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3446777788887776 443 343336677888888887763 2 34666777888888888876 45443323334444
Q ss_pred HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc----cccccccCCeee
Q 048681 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP----QIGKLTRVRALN 231 (266)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~ 231 (266)
.|.+..+...+....... ..+++|+.|++.+|.++. .+. .+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeC
Confidence 444443333333322111 125556666666666552 232 234455666554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.3e-10 Score=93.09 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=95.9
Q ss_pred cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccc
Q 048681 97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 176 (266)
+.-++.|+++++++|.++ .+...+. ..+.++.|++++|.+. .. +.++.+++|+.|++++|.++. + .++...+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~-~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-C-VGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-h-hhhHhhhcC
Confidence 445667889999999887 5555443 3788999999999986 33 347888999999999998862 2 344444556
Q ss_pred hhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc-CCccccccccCCeeecccccccccCC
Q 048681 177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 177 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
++.+.+..+.......+.. +=+|..||+.+|+|... -...++.+|-|.++.+.+|++.+.+.
T Consensus 354 IKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred EeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 6666655554444333222 55788899999988732 23457888999999999999887765
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=3e-09 Score=96.92 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR 91 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (266)
.++.|++++|.+.+.+|..|..+++|+.|++++|.+++.+|. .+..+ +.|+.|++++|... .
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l-~~L~~LdLs~N~ls----------------g 480 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSI-TSLEVLDLSYNSFN----------------G 480 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCC-CCCCEEECCCCCCC----------------C
Confidence 367788888888888888888888888888888888877776 66666 67777776666521 1
Q ss_pred ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccc
Q 048681 92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEF 138 (266)
Q Consensus 92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 138 (266)
.+|..+..+++|+.|++++|.+++.+|..+.....++..+++.+|..
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 24555566666667777666666666665554334455666665543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=6.2e-11 Score=96.39 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=132.0
Q ss_pred cCCCCCcEEECCCccCccCCCh----hhhcCCCCcEEeccCCcccc----cCCC------Ccchhhcccccccccccch-
Q 048681 8 FRLRNLQELHMGANDLRGTLPW----CLENITSLKVLDLYLNQLTR----NISS------SPLLHLITSIEYLSTLNYL- 72 (266)
Q Consensus 8 ~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~i~~----~~~~------~~~~~~~~~L~~L~~~~~~- 72 (266)
.....++++++++|.+...-.+ .++..++|+..++++-. ++ .+|+ .++... +.|+++|+|.|-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAF 104 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcC-CceeEeecccccc
Confidence 4567788999999988865333 44456788888887642 22 1221 022233 577777777776
Q ss_pred hhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc------------ccCCCCcEEEcccccccc
Q 048681 73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG------------VYFPRLMYLNLSRNEFDG 140 (266)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~ 140 (266)
.+.++..+- .-+.++..|++|++.+|.+.......+. ..-++|+++...+|.+..
T Consensus 105 G~~g~~~l~-------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 105 GPKGIRGLE-------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CccchHHHH-------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 333322211 1244567788888888877632111110 113467888887777742
Q ss_pred c----CCccccCCCCCCEEEccCCeeeecC---CccccccccchhHHHhhhccccccccc--CCCCcCCCCccEEEccCC
Q 048681 141 S----IPSSIGDLNSLKFLDLSHNQLTGEI---PKHLAIGCFNLEYLVESLMFTTKETSY--SYKGKPLNKMYGIDLSCN 211 (266)
Q Consensus 141 ~----~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~L~~n 211 (266)
. +...+...+.|+.+.+..|.+...- -..-+..|++++.|+++++-....... ..+....+.|+++.+++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1 2335566677888888877664210 011134677777777776654443322 222233456777777777
Q ss_pred cccccCCc----cc-cccccCCeeeccccccccc--------------CCeEEeeCCee
Q 048681 212 KLVGEIPP----QI-GKLTRVRALNLSHNNLTGV--------------IPSLDVSYNNL 251 (266)
Q Consensus 212 ~i~~~~~~----~~-~~l~~L~~L~l~~n~l~~~--------------~~~l~l~~n~i 251 (266)
.+...... .+ ...++|..+.+.+|.++.. +..|+|++|++
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77644332 22 2356777777777777722 11788888887
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=3.9e-09 Score=96.20 Aligned_cols=106 Identities=33% Similarity=0.558 Sum_probs=61.9
Q ss_pred ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182 (266)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~ 182 (266)
++.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~----------- 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG----------- 487 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-----------
Confidence 555666666666566655554 56666666666666555666666666666666666666655554442
Q ss_pred hhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccc-ccCCeeeccccc
Q 048681 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL-TRVRALNLSHNN 236 (266)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~ 236 (266)
.+++|+.|+|++|.+.+.+|..+... .++..+++.+|.
T Consensus 488 ----------------~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 ----------------QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ----------------cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 24566666666666666666555432 344555555554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.3e-10 Score=95.72 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=89.5
Q ss_pred EECCCccCccCCChhhh----cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681 16 LHMGANDLRGTLPWCLE----NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR 91 (266)
Q Consensus 16 L~l~~n~i~~~~~~~~~----~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (266)
+.+++-.+....-+.++ ++.+|+...|.++.+...... .-.+.|+.++.||+++|. ..+|.
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL--------------~~nw~ 162 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNL--------------FHNWF 162 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhh--------------HHhHH
Confidence 34455555544334443 578899999999988643222 334445999999999985 34555
Q ss_pred ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCe
Q 048681 92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~ 161 (266)
.+..-..-+++|+.|+++.|++.-.........++.++.|.++.|+++.- +...+..+|+++.|++..|.
T Consensus 163 ~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 163 PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 55566677889999999999987333333333477899999999998732 23345578899999998885
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.7e-09 Score=67.58 Aligned_cols=60 Identities=30% Similarity=0.390 Sum_probs=52.0
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
|+|++|++++|.+..+.+..|.++++|++|++++|.++...+. .|..+ ++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l-~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNL-PNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTS-TTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCC-CCCCEEeCcCCc
Confidence 6899999999999988888999999999999999999865555 77787 888888887764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=8e-09 Score=64.53 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=54.0
Q ss_pred cCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 101 WHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
++|++|++++|++. .+|+..+..+++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999998 77877777799999999999999877778999999999999999875
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=5.1e-09 Score=84.10 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 167 (266)
+..|+.+++++|.++ .+.+.+.-.|.+++|++++|.+. .+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~ 323 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ 323 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh
Confidence 668999999999997 77778888899999999999997 443
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.8e-09 Score=95.82 Aligned_cols=175 Identities=27% Similarity=0.279 Sum_probs=106.2
Q ss_pred ChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch-hhhhc-----cCCCC---cc---e---ecccCcc
Q 048681 28 PWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL-VLVSM-----LHFPN---SF---T---ITMSWRP 92 (266)
Q Consensus 28 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~-----~~~~~---~~---~---~~~~~~~ 92 (266)
|-.|..+..|+.|.+.+|++... . ++..+-.+|++|.-.+.. ....+ ..+++ +. + ..+.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--K-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--h-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 66788899999999999998742 2 566665677777665554 11111 11111 11 1 1122233
Q ss_pred cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccc
Q 048681 93 FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172 (266)
Q Consensus 93 l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 172 (266)
+..++.-++.++.|++++|+++ .+. .+.. ++.|++||+++|.+. .+|..-..-.+|..|.+++|-++. +- ++
T Consensus 179 mD~SLqll~ale~LnLshNk~~-~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L~-gi-- 250 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFT-KVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-LR-GI-- 250 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhh-hhH-HHHh-cccccccccccchhc-cccccchhhhhheeeeecccHHHh-hh-hH--
Confidence 4455556677888888888887 443 4444 778888888888886 455433322347888888887762 21 11
Q ss_pred cccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC-ccccccccCCeeeccccccc
Q 048681 173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP-PQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 173 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~ 238 (266)
.++++|+.||+++|.+.+--. ..+..+..|+.|+|.||++-
T Consensus 251 -------------------------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 -------------------------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -------------------------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 125677777788777663211 12455677777888887766
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.7e-08 Score=87.97 Aligned_cols=197 Identities=24% Similarity=0.255 Sum_probs=90.9
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
+..++.+.+..|.+.. .-..+..+++|+.|++.+|.|... .. .+..+ .+|++|++++|.+...
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~-~l~~~-~~L~~L~ls~N~I~~i------------- 133 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-EN-LLSSL-VNLQVLDLSFNKITKL------------- 133 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-cc-chhhh-hcchheeccccccccc-------------
Confidence 3444444455555542 222344555556666666655532 11 13333 5555666655552110
Q ss_pred CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCeeeecCCc
Q 048681 90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSS-IGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
.++..++.|+.|++++|.+. .+. .+.. +.+|+.+++++|.+... ... ...+.+++.+.+..|.+. .+..
T Consensus 134 -----~~l~~l~~L~~L~l~~N~i~-~~~-~~~~-l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~-~i~~ 203 (414)
T KOG0531|consen 134 -----EGLSTLTLLKELNLSGNLIS-DIS-GLES-LKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIR-EIEG 203 (414)
T ss_pred -----cchhhccchhhheeccCcch-hcc-CCcc-chhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchh-cccc
Confidence 01223344666666666665 222 1211 55666666666666522 221 345566666666666554 2211
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCC--CccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN--KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
. ..+..+..+.+..+.......... .. .|+.+++.+|.+. .++..+..+..+..+++..|++...
T Consensus 204 ~--~~~~~l~~~~l~~n~i~~~~~l~~----~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 204 L--DLLKKLVLLSLLDNKISKLEGLNE----LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred h--HHHHHHHHhhcccccceeccCccc----chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc
Confidence 0 111111111222222221111111 11 2667777777766 4434456666677777777766633
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.6e-10 Score=88.27 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=87.3
Q ss_pred CCcEEECCCccCccC-CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 12 NLQELHMGANDLRGT-LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
.|+.+|++...|+.. +...+..+.+|+.|.+.++++.+.+.. .+.+. .+|+.|+++.+.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN-~~L~~lnlsm~sG~t~-------------- 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKN-SNLVRLNLSMCSGFTE-------------- 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhcc-ccceeeccccccccch--------------
Confidence 367778887777643 233345678888888888888766665 67777 7888888877763221
Q ss_pred cccccCcccccCccEEEccCccccccC-CccccccCCCCcEEEccccccc---ccCCccccCCCCCCEEEccCCee
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNI-PLEIGVYFPRLMYLNLSRNEFD---GSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
+.+..-+.++..|++|++++|...... ...+..--++|+.|+++++.-. +.+.-....++++..||+++|-.
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 122233567788999999998876322 1112222457888899888652 12222345788999999988753
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=3.1e-08 Score=78.57 Aligned_cols=142 Identities=20% Similarity=0.154 Sum_probs=83.4
Q ss_pred cccccCccEEEccCccccccCCcccc---ccCCCCcEEEcccccccccCCccc-------------cCCCCCCEEEccCC
Q 048681 97 IQSHWHLATLYVSKKFFQGNIPLEIG---VYFPRLMYLNLSRNEFDGSIPSSI-------------GDLNSLKFLDLSHN 160 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~n 160 (266)
+-.+++|+.++++.|-+....|+.+. +....|++|.+.+|.+.......+ ..-|.|+.+.++.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34567788888888888766665443 225578888888887752222211 24467888888888
Q ss_pred eeeecCCccccc---cccchhHHHhhhcccccc--cccCC-CCcCCCCccEEEccCCccccc----CCccccccccCCee
Q 048681 161 QLTGEIPKHLAI---GCFNLEYLVESLMFTTKE--TSYSY-KGKPLNKMYGIDLSCNKLVGE----IPPQIGKLTRVRAL 230 (266)
Q Consensus 161 ~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~--~~~~~-~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L 230 (266)
++.......+.. .-.+++.+.+..++.... ..+.+ ....+.+|+.||+++|.++-. +..++..++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 876322221211 112333333333332222 11111 112368999999999998733 22345567889999
Q ss_pred eccccccc
Q 048681 231 NLSHNNLT 238 (266)
Q Consensus 231 ~l~~n~l~ 238 (266)
.+..|-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 99999877
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=2.1e-06 Score=80.73 Aligned_cols=107 Identities=21% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCCCcEEECCCcc--CccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681 10 LRNLQELHMGAND--LRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT 87 (266)
Q Consensus 10 l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ 87 (266)
.++|++|-+.+|. +......-|..++.|+.||+++|.-.+..|+ .+..+ -.|++|+++++.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L-i~LryL~L~~t~I-------------- 607 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL-VHLRYLDLSDTGI-------------- 607 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh-hhhhcccccCCCc--------------
Confidence 3345555555553 3322222234455555555555544444555 55555 5555555555443
Q ss_pred ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN 136 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (266)
..+|.++.++.+|.+|++........+ +++...+.+|++|.+...
T Consensus 608 ---~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 608 ---SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred ---cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 334445555555555555544433222 222222555555555444
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.23 E-value=5.1e-07 Score=84.81 Aligned_cols=135 Identities=23% Similarity=0.283 Sum_probs=103.7
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc--ccccCCCCcchhhcccccccccccchhhhhccCCCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ--LTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPN 82 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 82 (266)
+...+....+.+.+-++.+. ..+.+.. .+.|++|-+..|. +. .++. .|+...+.|+.||+++|.
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~-~ff~~m~~LrVLDLs~~~---------- 582 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISG-EFFRSLPLLRVLDLSGNS---------- 582 (889)
T ss_pred ccccchhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCH-HHHhhCcceEEEECCCCC----------
Confidence 34445566677777777766 3333333 4579999999986 44 4554 555544999999999864
Q ss_pred cceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 83 SFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
+..++|..++.+.+|++|++++..+. ++|.++.. ++.|.+|++..+.....++.....+.+|++|.+....
T Consensus 583 ------~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 583 ------SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ------ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 34678999999999999999999998 99999887 8999999999988765667777779999999987754
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.4e-06 Score=50.16 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=32.3
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR 49 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 49 (266)
++|++|++++|.|+ .+|..|+++++|++|++++|.|++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 58999999999999 566679999999999999999983
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=1.3e-07 Score=82.42 Aligned_cols=210 Identities=28% Similarity=0.292 Sum_probs=134.0
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
.+.++.++...+.+....-. ...+..++.+++..|.|+. +-. .+..+ .+|..+++..|.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~-~l~~~-~~l~~l~l~~n~i~--------------- 108 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILN-HLSKL-KSLEALDLYDNKIE--------------- 108 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhc-ccccc-cceeeeeccccchh---------------
Confidence 44555566666655422211 1457788888899999874 222 45666 99999999998841
Q ss_pred CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
.+...+..+++|++|+++.|.++. +. .+. .++.|+.|++.+|.+.. + ..+..+.+|+.+++++|++. .+...
T Consensus 109 --~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~-~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~~ 180 (414)
T KOG0531|consen 109 --KIENLLSSLVNLQVLDLSFNKITK-LE-GLS-TLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIEND 180 (414)
T ss_pred --hcccchhhhhcchheecccccccc-cc-chh-hccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh-hhhhh
Confidence 122224668899999999999984 32 222 36779999999999963 2 34456899999999999997 44431
Q ss_pred ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc--cCCeeeccccccccc---C---
Q 048681 170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT--RVRALNLSHNNLTGV---I--- 241 (266)
Q Consensus 170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~---~--- 241 (266)
....+.++..+.+..+.......... +..+..+++..|.++. +-. +.... +|+.+++.+|.+... +
T Consensus 181 ~~~~~~~l~~l~l~~n~i~~i~~~~~----~~~l~~~~l~~n~i~~-~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~ 254 (414)
T KOG0531|consen 181 ELSELISLEELDLGGNSIREIEGLDL----LKKLVLLSLLDNKISK-LEG-LNELVMLHLRELYLSGNRISRSPEGLENL 254 (414)
T ss_pred hhhhccchHHHhccCCchhcccchHH----HHHHHHhhccccccee-ccC-cccchhHHHHHHhcccCcccccccccccc
Confidence 02445566666555554443333222 3445555777777762 222 22233 388888888888754 1
Q ss_pred ---CeEEeeCCeee
Q 048681 242 ---PSLDVSYNNLN 252 (266)
Q Consensus 242 ---~~l~l~~n~i~ 252 (266)
+.+++..|++.
T Consensus 255 ~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 255 KNLPVLDLSSNRIS 268 (414)
T ss_pred ccccccchhhcccc
Confidence 26777777765
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.3e-06 Score=50.34 Aligned_cols=39 Identities=31% Similarity=0.685 Sum_probs=32.9
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 201 NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 201 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
++|++|++++|.|+ .+|..++++++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46899999999999 6787799999999999999998843
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=7.4e-07 Score=70.92 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=78.5
Q ss_pred ccccCCCCCcEEECCCccCccCCChh----hhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWC----LENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF 80 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 80 (266)
+++..||+|+.+++|.|.+....|.. +++.+.|++|.+++|.+. .+....+++. |.+|-. |.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigka---l~~la~--nK-------- 151 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKA---LFHLAY--NK-------- 151 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHH---HHHHHH--Hh--------
Confidence 35567888888888888888776654 346788888888888764 3333234332 222211 11
Q ss_pred CCcceecccCcccccCcccccCccEEEccCccccccCCccc----cccCCCCcEEEcccccccccC-----CccccCCCC
Q 048681 81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI----GVYFPRLMYLNLSRNEFDGSI-----PSSIGDLNS 151 (266)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~~ 151 (266)
-..+.+.|+.+....|++. ..+... .....+|+++.+.+|.|.... -..+..+.+
T Consensus 152 ---------------Kaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~ 215 (388)
T COG5238 152 ---------------KAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS 215 (388)
T ss_pred ---------------hhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence 1234567777777777765 222221 122357788888887775221 123445677
Q ss_pred CCEEEccCCeeee
Q 048681 152 LKFLDLSHNQLTG 164 (266)
Q Consensus 152 L~~L~l~~n~~~~ 164 (266)
|+.|++..|.++.
T Consensus 216 LevLDlqDNtft~ 228 (388)
T COG5238 216 LEVLDLQDNTFTL 228 (388)
T ss_pred ceeeeccccchhh
Confidence 8888888877764
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.2e-07 Score=67.80 Aligned_cols=69 Identities=28% Similarity=0.531 Sum_probs=58.3
Q ss_pred ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681 100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 171 (266)
...|+.+++++|.+. .+|+.+...++-++.+++..|.++ ..|..+..++.|+.++++.|.+. ..|+.++
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH
Confidence 356778899999997 778877776788999999999997 78888999999999999999997 5666665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1.2e-06 Score=70.69 Aligned_cols=202 Identities=15% Similarity=0.096 Sum_probs=87.9
Q ss_pred CCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC----Ccce-----ecccCcccccCcccccCcc
Q 048681 34 ITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP----NSFT-----ITMSWRPFRMPIQSHWHLA 104 (266)
Q Consensus 34 l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~----~~~~-----~~~~~~~l~~~~~~~~~L~ 104 (266)
++.++.+||.+|.|.+=..-.++.+.++.|++|+++.|+....+...| ++.+ ...+|........++++++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 455555666666554311000222223555566666555433333332 1111 2345566666677778888
Q ss_pred EEEccCcccccc-CCcc-ccccCCCCcEEEccccccccc--CCccccCCCCCCEEEccCCeeeecCCccccccccchhHH
Q 048681 105 TLYVSKKFFQGN-IPLE-IGVYFPRLMYLNLSRNEFDGS--IPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180 (266)
Q Consensus 105 ~L~l~~n~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 180 (266)
+|.++.|.+... +.+. ....-+.+.++...+|..... .-......+++..+-+..|.+.+.-.+.-+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 887777754311 1111 111122344444444443210 111112334555555555544422222222223333333
Q ss_pred HhhhcccccccccCCCCcCCCCccEEEccCCcccccCC----c--cccccccCCeeeccccccc
Q 048681 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP----P--QIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~--~~~~l~~L~~L~l~~n~l~ 238 (266)
.+..+............ .++.|..|-+.++.+.+.+. . .++.+++++.|+ |.+++
T Consensus 230 nL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN--GskIs 290 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN--GSKIS 290 (418)
T ss_pred hhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeeccceEEec--Ccccc
Confidence 33333333332222221 26667777777666543211 1 245566666643 44555
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.3e-06 Score=70.44 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=115.6
Q ss_pred cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681 33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112 (266)
Q Consensus 33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 112 (266)
....++-+.+-++.|........|...++.++.+|+.+|.+ ..|.++-.-..+++.|+.|+++.|.
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i--------------SdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI--------------SDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh--------------ccHHHHHHHHhcCccceEeeccCCc
Confidence 34455667777777764433335666678999999999874 3344444456788999999999999
Q ss_pred ccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCee---ee--cCCcccc--------ccccchh
Q 048681 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQL---TG--EIPKHLA--------IGCFNLE 178 (266)
Q Consensus 113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~---~~--~~~~~~~--------~~~~~l~ 178 (266)
+...+... .....+|++|-+.+..+... ....+..+|.++.|.|+.|.+ .. ...+.+. ..|....
T Consensus 109 L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 109 LSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred CCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence 87432211 12267899999988887633 334566788888999988833 21 0111111 1222222
Q ss_pred HHHhh---hccc---------cc--ccccCCCCcCCCCccEEEccCCccccc-CCccccccccCCeeecccccccccCC
Q 048681 179 YLVES---LMFT---------TK--ETSYSYKGKPLNKMYGIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 179 ~l~~~---~~~~---------~~--~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
++..- +... +. ...-.....+++.+..|.|+.+.|... ..+++.++++|+-|.+.++++.+.+.
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 21110 0000 00 111122233456666777888777632 44567778888888888888776544
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.1e-08 Score=78.32 Aligned_cols=139 Identities=20% Similarity=0.059 Sum_probs=74.8
Q ss_pred cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccC--CccccCCCCCCEEEccCCeeeec-CCcccccc
Q 048681 97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSI--PSSIGDLNSLKFLDLSHNQLTGE-IPKHLAIG 173 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~ 173 (266)
++.+.+|+.|.+.++++.+.+...+.. -.+|+.++++.|.--... .-.+..++.|..|++++|.+... +...+..-
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 445566777777777776665555555 457777777766431111 12345667777777777765432 12222223
Q ss_pred ccchhHHHhhhcccccc-cccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeeccccc
Q 048681 174 CFNLEYLVESLMFTTKE-TSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN 236 (266)
Q Consensus 174 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 236 (266)
-.++..|.++.+..+-. .+.......++.|..|||++|. ++...-..|.+++.|++|+++.|.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 34555555544332211 1222222346777777777764 332222345666777777776665
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=1.3e-07 Score=84.41 Aligned_cols=117 Identities=26% Similarity=0.215 Sum_probs=80.1
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccE
Q 048681 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYG 205 (266)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 205 (266)
..|.+.+.++|.+. .+...+.-++.+++|++++|++. .+. ....+.++++||+.++.....+.+...+ + .|..
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g--c-~L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG--C-KLQL 236 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhh--h-hhee
Confidence 35666777777765 45556666677777777777776 332 3356667777777666655554444333 2 3889
Q ss_pred EEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEeeCCee
Q 048681 206 IDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVSYNNL 251 (266)
Q Consensus 206 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~~n~i 251 (266)
|.+.+|.++. +- .+.++++|..||++.|-+.+--+ .|+|.+|++
T Consensus 237 L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999998883 33 37889999999999998885433 788888876
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=7e-05 Score=64.11 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=37.6
Q ss_pred cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
..+++++.|++++|.++ .+|. + -.+|++|.+++|.-...+|. . ++.+|+.|++++|.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCP 105 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcc
Confidence 34678888888888777 4452 2 24688888887654334554 2 34678888888764
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=6.9e-05 Score=57.30 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccc
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNY 71 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~ 71 (266)
....+|+++|.+.. -+.|..++.|.+|.+.+|+|+...| .+..+.++|+.|.+.+|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p--~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP--DLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeecc--chhhhccccceEEecCc
Confidence 34456666666652 2345566667777777777764333 34444344444443333
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=2.3e-06 Score=61.25 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=16.7
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 236 (266)
++.|+.+.++.|.+. ..|..+..+.++..|+..+|-
T Consensus 99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 344444555555544 334444444444444444443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=5.2e-05 Score=57.94 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=63.2
Q ss_pred CccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHH
Q 048681 102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181 (266)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 181 (266)
....+++++|.+. .++ .+. .++.|++|.+.+|.++...|.--..+++|+.|.+.+|++. .+
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l--------------- 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-EL--------------- 103 (233)
T ss_pred ccceecccccchh-hcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchh-hh---------------
Confidence 4556667776665 322 222 2667777777777776444444445566777777776654 11
Q ss_pred hhhcccccccccCCCCcCCCCccEEEccCCcccccCCc----cccccccCCeeeccccc
Q 048681 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP----QIGKLTRVRALNLSHNN 236 (266)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~ 236 (266)
..+.... .+++|++|.+-+|.++.. .. .+..+++|+.||+++=+
T Consensus 104 ---------~dl~pLa-~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 104 ---------GDLDPLA-SCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ---------hhcchhc-cCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhhh
Confidence 1111111 267899999999988732 22 34668899998886543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=2.3e-05 Score=72.05 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=73.6
Q ss_pred CCCcEEECCCccCc-cCCChhhh-cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681 11 RNLQELHMGANDLR-GTLPWCLE-NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 11 ~~L~~L~l~~n~i~-~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~ 88 (266)
.+|+.|+++|...- ..-|..++ -+|+|++|.+++=.+...-=. .+.+-+++|..||++++.+..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~n------------- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISN------------- 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccC-------------
Confidence 34556666654322 11222333 356666666666544321000 122223566666666655210
Q ss_pred cCcccccCcccccCccEEEccCcccccc-CCccccccCCCCcEEEccccccccc------CCccccCCCCCCEEEccCCe
Q 048681 89 SWRPFRMPIQSHWHLATLYVSKKFFQGN-IPLEIGVYFPRLMYLNLSRNEFDGS------IPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~l~~L~~L~l~~n~ 161 (266)
+ .+++++++|+.|.+.+-.+... .-..++. +++|++||++....... ..+....+|.|++||++++.
T Consensus 188 ----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 188 ----L-SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ----c-HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 1 2345666666666665444311 1123444 67777777776654311 11122346788888888877
Q ss_pred eeecCCccccccccchhHHH
Q 048681 162 LTGEIPKHLAIGCFNLEYLV 181 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~ 181 (266)
+....-+.+...-++++.+.
T Consensus 262 i~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 262 INEEILEELLNSHPNLQQIA 281 (699)
T ss_pred hhHHHHHHHHHhCccHhhhh
Confidence 66444344433344444433
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=7.1e-05 Score=68.93 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=35.0
Q ss_pred cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
.+|.|+.|.+.+-.+...--..++..+++|..||+++++++.. ..+..+++|+.|.|.+=.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC
Confidence 3566777766664443111112334466777777777766522 45566666666666654443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.00087 Score=57.57 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=25.4
Q ss_pred cCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
.+.+++.|++++|.++ .+| .++.+|+.|++.++.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-----VLPNELTEITIENCN 83 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-----CCCCCCcEEEccCCC
Confidence 4788999999999877 344 355678888887754
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0013 Score=47.33 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=21.8
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLN 45 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 45 (266)
..|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc
Confidence 3566777777777764 455566667777777777777664
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00014 Score=58.46 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=61.4
Q ss_pred ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681 100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179 (266)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 179 (266)
+.+.+.|++.+|++.+ -.++..++.|++|.|+-|.++. ...+..|++|++|++..|.+.
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~---------------- 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE---------------- 76 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc----------------
Confidence 4455666666666652 1334446666666666666652 234456666666666666665
Q ss_pred HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc-----cccccccCCeee
Q 048681 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP-----QIGKLTRVRALN 231 (266)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~ 231 (266)
++.++... ..+++|+.|.|..|..++..+. .+.-+++|+.||
T Consensus 77 ---------sldEL~YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 ---------SLDELEYL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ---------cHHHHHHH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 22222111 1378999999999988766443 356788999876
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.6e-05 Score=61.12 Aligned_cols=59 Identities=31% Similarity=0.268 Sum_probs=29.8
Q ss_pred ccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-----cccCCCCCCEEE
Q 048681 98 QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-----SIGDLNSLKFLD 156 (266)
Q Consensus 98 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~ 156 (266)
.++++|++|++..|.+.+.-.-.....+++|..|+|..|...+.-+. ++..+|+|+.||
T Consensus 60 ~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34455666666666655221112223366666666666665433222 344556666555
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00094 Score=53.13 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=40.4
Q ss_pred CCccccCCCCCcEEECCCc--cCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 3 SISGLFRLRNLQELHMGAN--DLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
...+|..+++|++|.++.| ++.+.++--...+++|+++++++|+|.....-.....+ .+|..|++..|.
T Consensus 57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l-~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 57 TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL-ENLKSLDLFNCS 127 (260)
T ss_pred ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh-cchhhhhcccCC
Confidence 3456667777777777777 55544444444567777778777777631111123333 555566665554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0013 Score=52.40 Aligned_cols=62 Identities=26% Similarity=0.327 Sum_probs=37.4
Q ss_pred cccCccEEEccCccccccCCccccccCCCCcEEEcccc--cccccCCccccCCCCCCEEEccCCeee
Q 048681 99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
.+..|+.+.+.+..++ .+- .+. .+++|++|.++.| .+...+......+++|++++++.|++.
T Consensus 41 ~~~~le~ls~~n~glt-t~~-~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TLT-NFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhcccee-ecc-cCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3455666666666665 222 122 2678888888887 333334333445588888888888775
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.43 E-value=3.5e-05 Score=64.94 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCC
Q 048681 148 DLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN 211 (266)
Q Consensus 148 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 211 (266)
...+|+++-+..|+ +++.-...+...+..+..++.-.++......+.....+++.|+.+.+++|
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 33555555555553 22111122233444444444444433333333333334444555555444
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.38 E-value=7e-05 Score=63.18 Aligned_cols=231 Identities=15% Similarity=0.045 Sum_probs=124.2
Q ss_pred cCCCCCcEEECCCc-cCccCCChhhh-cCCCCcEEeccCC-cccccCCCCcchhhcccccccccccchhhhh------cc
Q 048681 8 FRLRNLQELHMGAN-DLRGTLPWCLE-NITSLKVLDLYLN-QLTRNISSSPLLHLITSIEYLSTLNYLVLVS------ML 78 (266)
Q Consensus 8 ~~l~~L~~L~l~~n-~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------~~ 78 (266)
.++|+++.|.+.+| .++...-.+++ .+.+|+.+++..| .+|+..-. .+.+-|++|++|+++++....+ .-
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 46677777777776 33333333333 4677777777774 35543333 3445568888888888772221 01
Q ss_pred CCCC---ccee------------------------cccCccccc-----CcccccCccEEEccCcccccc-CCccccccC
Q 048681 79 HFPN---SFTI------------------------TMSWRPFRM-----PIQSHWHLATLYVSKKFFQGN-IPLEIGVYF 125 (266)
Q Consensus 79 ~~~~---~~~~------------------------~~~~~~l~~-----~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~ 125 (266)
+... +... ..++..+.+ .-....+|+.++.+++...+. +-..+....
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 1111 0000 000111111 111245677777776554322 223344546
Q ss_pred CCCcEEEccccccccc--CCccccCCCCCCEEEccCCeeeecC-CccccccccchhHHHhhhcccccc---cccCCCCcC
Q 048681 126 PRLMYLNLSRNEFDGS--IPSSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNLEYLVESLMFTTKE---TSYSYKGKP 199 (266)
Q Consensus 126 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~ 199 (266)
.+|+.+-+.+|+--+. +...-..++.|+.+++..+...... -......++.++.+.++.+..... .........
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 6888888888874211 1122236678888888877654222 234446777888777774433211 222332234
Q ss_pred CCCccEEEccCCccc-ccCCccccccccCCeeeccccc-ccc
Q 048681 200 LNKMYGIDLSCNKLV-GEIPPQIGKLTRVRALNLSHNN-LTG 239 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~-l~~ 239 (266)
+..|+.+.|.++... +.....+..+++|+.+++..+. ++.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 677788888887643 3344456777888888887763 443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.26 E-value=0.0079 Score=43.10 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=29.6
Q ss_pred cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681 97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 159 (266)
+..+.+|+.+.+.. .+. .++...+....+++.+.+..+ +.......+..+++++.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 45556677777664 344 555555555557777777664 4433445566666677777754
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0037 Score=29.92 Aligned_cols=16 Identities=56% Similarity=0.605 Sum_probs=8.6
Q ss_pred CcEEeccCCcccccCCC
Q 048681 37 LKVLDLYLNQLTRNISS 53 (266)
Q Consensus 37 L~~L~l~~n~i~~~~~~ 53 (266)
|++||+++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 455555555555 4444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0064 Score=29.06 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=9.4
Q ss_pred ccEEEccCCcccccCCccc
Q 048681 203 MYGIDLSCNKLVGEIPPQI 221 (266)
Q Consensus 203 L~~L~L~~n~i~~~~~~~~ 221 (266)
|++||+++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.0018 Score=57.46 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=16.0
Q ss_pred cCCCCccEEEccCCcccccC-CccccccccC
Q 048681 198 KPLNKMYGIDLSCNKLVGEI-PPQIGKLTRV 227 (266)
Q Consensus 198 ~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L 227 (266)
..++.++.+.+.++...... ...+.+++.|
T Consensus 359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 34677777777776633221 1334555555
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.15 E-value=0.0073 Score=53.52 Aligned_cols=201 Identities=22% Similarity=0.127 Sum_probs=104.9
Q ss_pred ccCCCCCcEEECCCc-cCccCCC----hhhhcCCCCcEEeccCCc-ccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681 7 LFRLRNLQELHMGAN-DLRGTLP----WCLENITSLKVLDLYLNQ-LTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF 80 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 80 (266)
...+++|++|+++++ ......+ .....+.+|+.|+++.+. +++..-. .+...+++|++|.+.++....+
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~~~c~~L~~L~l~~c~~lt~---- 284 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALASRCPNLETLSLSNCSNLTD---- 284 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHHhhCCCcceEccCCCCccch----
Confidence 357899999999873 2211111 223356889999999988 6644333 4444457899998665552111
Q ss_pred CCcceecccCcccccCcccccCccEEEccCccccc-c-CCccccccCCCCcEEEccccc----cc-------------cc
Q 048681 81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG-N-IPLEIGVYFPRLMYLNLSRNE----FD-------------GS 141 (266)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~-~-~~~~~~~~~~~L~~L~l~~~~----~~-------------~~ 141 (266)
..+-.....++.|++|+++++.... . +... ....++++.+.+.... ++ ..
T Consensus 285 ----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~ 353 (482)
T KOG1947|consen 285 ----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDL 353 (482)
T ss_pred ----------hHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhH
Confidence 1111123456679999998877541 1 2222 2235555554433332 11 00
Q ss_pred CCccccCCCCCCEEEccCCeeeecCC-ccccccccch-hHHHhhhcccccccccCCCCcCCCCccEEEccCCccc-ccCC
Q 048681 142 IPSSIGDLNSLKFLDLSHNQLTGEIP-KHLAIGCFNL-EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV-GEIP 218 (266)
Q Consensus 142 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~ 218 (266)
..-....++.++.+.+..+... ... .....+|..+ ..+...... ...++.|+++.+... ....
T Consensus 354 ~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~~~l~~~~~~-------------~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 354 AELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLTESLELRLCR-------------SDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred hHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccchHHHHHhcc-------------CCccceEecccCccccccch
Confidence 1112345566777777766633 222 3444555555 222222111 222778888877643 2222
Q ss_pred ccccc-cccCCeeecccccc
Q 048681 219 PQIGK-LTRVRALNLSHNNL 237 (266)
Q Consensus 219 ~~~~~-l~~L~~L~l~~n~l 237 (266)
..... +..++.+++.++..
T Consensus 420 ~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 420 RCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHHhhhhhccccCCccCccc
Confidence 22222 55667777777653
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.13 E-value=0.031 Score=24.81 Aligned_cols=13 Identities=54% Similarity=0.697 Sum_probs=5.9
Q ss_pred CCcEEeccCCccc
Q 048681 36 SLKVLDLYLNQLT 48 (266)
Q Consensus 36 ~L~~L~l~~n~i~ 48 (266)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.73 E-value=0.062 Score=26.63 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=7.8
Q ss_pred CCCcEEECCCccCccC
Q 048681 11 RNLQELHMGANDLRGT 26 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~ 26 (266)
++|++|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.73 E-value=0.062 Score=26.63 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=7.8
Q ss_pred CCCcEEECCCccCccC
Q 048681 11 RNLQELHMGANDLRGT 26 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~ 26 (266)
++|++|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.24 E-value=0.00037 Score=61.57 Aligned_cols=187 Identities=23% Similarity=0.205 Sum_probs=93.6
Q ss_pred CcEEECCCccCccCCCh----hhhcCCCCcEEeccCCcccccCCCCcchhhccc-------ccccccccchhhhhccCCC
Q 048681 13 LQELHMGANDLRGTLPW----CLENITSLKVLDLYLNQLTRNISSSPLLHLITS-------IEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 13 L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~-------L~~L~~~~~~~~~~~~~~~ 81 (266)
+..+.+.+|.+...... .+...+.|+.|++++|.+.+. +...++.. +++|++..|..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~----g~~~l~~~l~~~~~~l~~L~l~~c~l-------- 156 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE----GARLLCEGLRLPQCLLQTLELVSCSL-------- 156 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH----hHHHHHhhcccchHHHHHHHhhcccc--------
Confidence 66778888888765333 344578899999999988742 22222222 22333333321
Q ss_pred CcceecccCcccccCcccccCccEEEccCccccc----cCCccccc---cCCCCcEEEccccccccc----CCccccCCC
Q 048681 82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG----NIPLEIGV---YFPRLMYLNLSRNEFDGS----IPSSIGDLN 150 (266)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~l~~l~ 150 (266)
..-....+...+.....++.++++.|.+.. .++..+.. ....+++|.+.+|.++.. ....+...+
T Consensus 157 ----~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 157 ----TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred ----cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 001112223334445566666666666531 01111111 244566666666665421 112233333
Q ss_pred C-CCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCC----cccccc
Q 048681 151 S-LKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIP----PQIGKL 224 (266)
Q Consensus 151 ~-L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~----~~~~~l 224 (266)
+ +..+++.+|++.+....... .....+ ..++.+++.+|.+++... ..+..+
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~-----------------------~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~ 289 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLL-----------------------PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC 289 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHH-----------------------HHhcccchhhhhhhhhcCCccccchHHHHHHHhhh
Confidence 3 44466666655532111111 111112 466777777777764422 334555
Q ss_pred ccCCeeeccccccc
Q 048681 225 TRVRALNLSHNNLT 238 (266)
Q Consensus 225 ~~L~~L~l~~n~l~ 238 (266)
++++++.++.|++.
T Consensus 290 ~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 290 RQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhhcccCccc
Confidence 67777777777766
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.72 E-value=0.038 Score=26.85 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=7.6
Q ss_pred CCCcEEeccCCcccc
Q 048681 35 TSLKVLDLYLNQLTR 49 (266)
Q Consensus 35 ~~L~~L~l~~n~i~~ 49 (266)
++|++|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666553
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=0.045 Score=42.22 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccE
Q 048681 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYG 205 (266)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 205 (266)
..++.++-+++.+......-+..++.++.+.+.+|+.-+ .+. +.......++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d----D~~---------------------L~~l~~~~~~L~~ 155 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD----DWC---------------------LERLGGLAPSLQD 155 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh----hHH---------------------HHHhcccccchhe
Confidence 367888888888765555667777888888887775432 110 0111113689999
Q ss_pred EEccCCc-ccccCCccccccccCCeeeccccc
Q 048681 206 IDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN 236 (266)
Q Consensus 206 L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 236 (266)
|++++|. |++.....+..+++|+.|.+.+=+
T Consensus 156 L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 156 LDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred eeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 9999884 776556667888889888876643
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.25 E-value=1.1 Score=22.35 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=12.3
Q ss_pred CCCCcEEeccCCccc
Q 048681 34 ITSLKVLDLYLNQLT 48 (266)
Q Consensus 34 l~~L~~L~l~~n~i~ 48 (266)
+.+|+.|+++.|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467888999999886
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.07 E-value=0.1 Score=41.43 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=30.2
Q ss_pred CccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 23 LRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 23 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++.+....++.+...+.||++.|+... ... -|..+ +.+..|+++.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn-~~~-n~s~~-t~~~rl~~sknq 76 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVN-LGK-NFSIL-TRLVRLDLSKNQ 76 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHh-hcc-chHHH-HHHHHHhccHhh
Confidence 333445566777777778888777653 333 45555 777777777776
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.40 E-value=0.17 Score=40.13 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=60.7
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
.+......+.||++.|++. -.-..|.-++.+..||++.|.|. ..|. .+.+. ..+..++...|+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~-~e~~~~~~~~n~~------------ 100 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQ-RETVNAASHKNNH------------ 100 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHH-HHHHHHHhhccch------------
Confidence 4556677778888888776 44556777888888888888876 5666 66666 6666666655543
Q ss_pred ecccCcccccCcccccCccEEEccCcccc
Q 048681 86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114 (266)
Q Consensus 86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~ 114 (266)
+..|.++...+++++++.-++.+.
T Consensus 101 -----~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 -----SQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -----hhCCccccccCCcchhhhccCcch
Confidence 445666777777777777666554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.88 E-value=0.87 Score=35.36 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeccccccc------------ccCCeEEeeCCe-eeecCChhhhhcccC
Q 048681 201 NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT------------GVIPSLDVSYNN-LNGKIPPQLVELNAL 265 (266)
Q Consensus 201 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~l~l~~n~-i~~~~p~~~~~~~~l 265 (266)
-.++.+|-+++.|+.+.-+.+.+++.++.+.+.+|+.- +.+..|++++|+ |+..--.++.++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 35777787777777666667777888888888777644 223478888777 776555666666555
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.88 E-value=1.9 Score=21.73 Aligned_cols=15 Identities=47% Similarity=0.507 Sum_probs=12.5
Q ss_pred CCCcEEeccCCcccc
Q 048681 35 TSLKVLDLYLNQLTR 49 (266)
Q Consensus 35 ~~L~~L~l~~n~i~~ 49 (266)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578999999998864
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.37 E-value=2.7 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=10.5
Q ss_pred CCccEEEccCCcccccCCc
Q 048681 201 NKMYGIDLSCNKLVGEIPP 219 (266)
Q Consensus 201 ~~L~~L~L~~n~i~~~~~~ 219 (266)
+.|+.|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 34566666666665 4554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.24 E-value=5 Score=36.04 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=22.6
Q ss_pred cCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
+.+.+..+.|++|++.....-+++..-.++|..|++++|+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~ 255 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH 255 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccch
Confidence 4566777777777765332222333334666666666663
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.16 E-value=9.3 Score=18.59 Aligned_cols=12 Identities=33% Similarity=0.290 Sum_probs=7.1
Q ss_pred CCCcEEeccCCc
Q 048681 35 TSLKVLDLYLNQ 46 (266)
Q Consensus 35 ~~L~~L~l~~n~ 46 (266)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.21 E-value=12 Score=33.70 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=35.5
Q ss_pred CCCccEEEccCCccccc--CCccccccccCCeeecccc--ccccc--------CC--eEEeeCCeeee
Q 048681 200 LNKMYGIDLSCNKLVGE--IPPQIGKLTRVRALNLSHN--NLTGV--------IP--SLDVSYNNLNG 253 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n--~l~~~--------~~--~l~l~~n~i~~ 253 (266)
.+.+..+.|++|++... +...-...|.|+.|+|++| .+... +| +|.+.+|++-.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 56777888888887621 2222234678889999988 44422 22 88888888754
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.34 E-value=23 Score=38.45 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=29.4
Q ss_pred ECCCccCccCCChhhhcCCCCcEEeccCCcccc
Q 048681 17 HMGANDLRGTLPWCLENITSLKVLDLYLNQLTR 49 (266)
Q Consensus 17 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 49 (266)
+|++|+|..+.+..|..+++|++|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999998888899999999999999998764
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.41 E-value=1.1 Score=40.03 Aligned_cols=111 Identities=26% Similarity=0.284 Sum_probs=58.4
Q ss_pred CcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCccccccc----cchhHHHhhhcccccccccCC--CC
Q 048681 128 LMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC----FNLEYLVESLMFTTKETSYSY--KG 197 (266)
Q Consensus 128 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~l~~l~~~~~~~~~~~~~~~--~~ 197 (266)
+..+++.+|.+... +...+....+|+.+++++|.+++.-...+...+ ..++++....+.......... ..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 45555555555422 233445556666666666666533222222211 233344444443333322211 11
Q ss_pred cCCCCccEEEccCCccccc----CCcccc----ccccCCeeeccccccc
Q 048681 198 KPLNKMYGIDLSCNKLVGE----IPPQIG----KLTRVRALNLSHNNLT 238 (266)
Q Consensus 198 ~~~~~L~~L~L~~n~i~~~----~~~~~~----~l~~L~~L~l~~n~l~ 238 (266)
.....++.+++..|.+... ++..+. ...++++|++.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 1257788888888887421 223333 4778999999999888
Done!