Query 048681
Match_columns 266
No_of_seqs 110 out of 1927
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-28 3.6E-33 228.6 22.0 253 10-266 393-707 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-28 9.9E-33 203.1 17.1 223 11-257 50-286 (313)
3 3rgz_A Protein brassinosteroid 100.0 1.7E-27 5.9E-32 220.5 21.5 250 3-258 410-723 (768)
4 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-27 1.3E-31 196.3 16.8 210 35-266 50-271 (313)
5 4fcg_A Uncharacterized protein 99.9 6E-27 2.1E-31 196.3 16.6 208 9-266 79-304 (328)
6 3v47_A TOLL-like receptor 5B a 99.9 5.6E-26 1.9E-30 198.3 18.9 66 5-72 48-114 (455)
7 2id5_A Lingo-1, leucine rich r 99.9 2.8E-26 9.6E-31 201.5 15.9 255 5-265 50-322 (477)
8 3t6q_A CD180 antigen; protein- 99.9 5.1E-26 1.7E-30 205.4 17.9 256 6-266 273-550 (606)
9 3v47_A TOLL-like receptor 5B a 99.9 1.5E-25 5.1E-30 195.7 18.2 61 11-72 30-90 (455)
10 3t6q_A CD180 antigen; protein- 99.9 1.5E-25 5E-30 202.4 17.4 165 99-265 276-451 (606)
11 4eco_A Uncharacterized protein 99.9 8.3E-26 2.8E-30 205.1 14.5 260 3-266 239-569 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 1.8E-25 6.3E-30 207.6 14.7 256 3-266 481-809 (876)
13 4eco_A Uncharacterized protein 99.9 1.6E-25 5.6E-30 203.2 13.2 229 3-238 198-470 (636)
14 2id5_A Lingo-1, leucine rich r 99.9 7.5E-25 2.6E-29 192.4 15.5 250 10-266 31-299 (477)
15 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-25 3.3E-29 179.3 14.5 230 10-261 31-270 (285)
16 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-24 8.5E-29 180.6 16.9 245 11-266 54-323 (332)
17 1xku_A Decorin; proteoglycan, 99.9 8.9E-24 3E-28 177.1 20.0 245 11-265 52-321 (330)
18 4fcg_A Uncharacterized protein 99.9 2E-24 6.7E-29 181.0 15.7 199 3-242 96-294 (328)
19 2z66_A Variable lymphocyte rec 99.9 1.4E-24 4.8E-29 180.1 14.7 222 11-238 28-261 (306)
20 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-24 1.2E-28 193.3 18.4 138 125-265 375-523 (606)
21 1xku_A Decorin; proteoglycan, 99.9 8.5E-24 2.9E-28 177.2 18.4 235 12-260 32-284 (330)
22 2z7x_B TOLL-like receptor 1, v 99.9 6.8E-25 2.3E-29 194.7 12.1 62 6-72 40-101 (520)
23 3o6n_A APL1; leucine-rich repe 99.9 3.5E-24 1.2E-28 183.5 15.8 244 9-266 43-321 (390)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-24 9.1E-29 192.7 15.4 63 5-72 70-132 (562)
25 3zyi_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 184.8 17.9 217 11-252 75-303 (452)
26 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-25 9.6E-30 185.3 7.8 225 7-265 30-264 (317)
27 3zyj_A Leucine-rich repeat-con 99.9 1.5E-23 5.1E-28 182.5 17.1 217 11-252 64-292 (440)
28 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-23 5.1E-28 191.7 17.7 251 11-265 25-298 (680)
29 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-24 8.8E-29 194.3 12.4 131 6-139 51-194 (606)
30 2z7x_B TOLL-like receptor 1, v 99.9 8.9E-24 3.1E-28 187.5 15.6 64 4-72 62-126 (520)
31 4ecn_A Leucine-rich repeat pro 99.9 4.3E-24 1.5E-28 198.5 14.0 178 3-187 440-656 (876)
32 3oja_A Leucine-rich immune mol 99.9 8.4E-25 2.9E-29 192.5 8.7 222 9-264 32-263 (487)
33 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-23 3.6E-28 197.0 16.3 256 5-265 42-364 (844)
34 3oja_B Anopheles plasmodium-re 99.9 1.2E-23 4E-28 189.7 16.1 243 10-266 50-327 (597)
35 3rfs_A Internalin B, repeat mo 99.9 6.8E-24 2.3E-28 173.2 12.9 210 4-264 34-247 (272)
36 2z66_A Variable lymphocyte rec 99.9 5.4E-24 1.8E-28 176.5 12.5 226 7-239 48-288 (306)
37 4fmz_A Internalin; leucine ric 99.9 4E-23 1.4E-27 174.1 17.6 243 2-265 57-335 (347)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-23 1E-27 185.9 17.3 64 4-72 93-157 (562)
39 3o6n_A APL1; leucine-rich repe 99.9 1.6E-23 5.6E-28 179.4 14.4 237 7-253 65-353 (390)
40 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5.1E-27 170.6 18.9 230 4-252 81-346 (347)
41 3zyi_A Leucine-rich repeat-con 99.9 7.2E-23 2.5E-27 178.7 17.5 213 4-240 92-305 (452)
42 2z80_A TOLL-like receptor 2, v 99.9 2.2E-24 7.5E-29 182.5 7.6 242 11-256 52-318 (353)
43 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-23 7.5E-28 186.0 14.5 137 125-266 333-500 (549)
44 2z63_A TOLL-like receptor 4, v 99.9 1.8E-23 6.2E-28 187.3 13.9 109 5-115 46-163 (570)
45 2z63_A TOLL-like receptor 4, v 99.9 6.9E-23 2.3E-27 183.5 16.8 118 146-265 392-520 (570)
46 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-22 5.3E-27 185.0 19.4 256 7-265 325-611 (680)
47 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-24 1.5E-28 190.5 8.8 152 11-164 26-210 (549)
48 3j0a_A TOLL-like receptor 5; m 99.9 4.6E-23 1.6E-27 192.7 15.5 256 9-266 22-341 (844)
49 3zyj_A Leucine-rich repeat-con 99.9 6.8E-23 2.3E-27 178.3 15.5 211 4-238 81-292 (440)
50 3oja_B Anopheles plasmodium-re 99.9 3.2E-23 1.1E-27 187.0 13.6 238 7-254 71-360 (597)
51 2ft3_A Biglycan; proteoglycan, 99.9 9.4E-23 3.2E-27 171.0 15.4 235 12-261 34-286 (332)
52 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-22 9.3E-27 164.7 15.9 217 13-255 13-241 (285)
53 2z62_A TOLL-like receptor 4, v 99.9 2.7E-22 9.2E-27 163.9 15.1 209 11-242 28-241 (276)
54 1o6v_A Internalin A; bacterial 99.9 4.3E-22 1.5E-26 174.4 17.0 128 125-265 220-355 (466)
55 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4E-28 178.0 6.4 232 6-242 71-318 (353)
56 1wwl_A Monocyte differentiatio 99.9 4.1E-23 1.4E-27 171.8 8.1 139 9-166 93-244 (312)
57 1o6v_A Internalin A; bacterial 99.9 1.2E-21 4E-26 171.7 17.6 150 100-265 220-377 (466)
58 1wwl_A Monocyte differentiatio 99.9 8.4E-24 2.9E-28 176.0 3.6 111 33-163 93-214 (312)
59 1p9a_G Platelet glycoprotein I 99.9 8.6E-22 3E-26 162.1 14.9 204 6-238 5-208 (290)
60 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-21 8E-26 169.2 15.6 212 4-240 35-248 (457)
61 2o6q_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 156.0 16.0 202 13-240 18-220 (270)
62 4g8a_A TOLL-like receptor 4; l 99.9 9E-21 3.1E-25 171.5 18.7 70 196-265 489-569 (635)
63 3rfs_A Internalin B, repeat mo 99.9 5.5E-21 1.9E-25 155.9 14.6 185 2-242 54-239 (272)
64 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4.1E-25 164.7 15.5 220 22-263 29-257 (457)
65 2z62_A TOLL-like receptor 4, v 99.8 3.2E-20 1.1E-24 151.6 16.4 215 15-256 11-241 (276)
66 1h6u_A Internalin H; cell adhe 99.8 1.6E-20 5.5E-25 155.9 14.4 198 6-241 36-233 (308)
67 4g8a_A TOLL-like receptor 4; l 99.8 4.5E-20 1.5E-24 166.9 18.1 127 125-253 444-581 (635)
68 2xwt_C Thyrotropin receptor; s 99.8 1.8E-20 6.1E-25 149.9 13.6 182 11-242 31-222 (239)
69 1jl5_A Outer protein YOPM; leu 99.8 7.6E-20 2.6E-24 159.5 17.5 54 11-72 131-184 (454)
70 3m19_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 146.3 16.8 181 11-240 14-194 (251)
71 1h6u_A Internalin H; cell adhe 99.8 9.9E-20 3.4E-24 151.1 15.8 182 2-220 54-235 (308)
72 4glp_A Monocyte differentiatio 99.8 7.8E-21 2.7E-25 157.9 9.1 183 11-239 91-286 (310)
73 3o53_A Protein LRIM1, AGAP0063 99.8 2E-20 6.9E-25 155.8 11.4 194 5-238 52-250 (317)
74 1jl5_A Outer protein YOPM; leu 99.8 5.8E-21 2E-25 166.6 8.3 50 200-253 236-291 (454)
75 3oja_A Leucine-rich immune mol 99.8 4.5E-20 1.5E-24 162.4 13.8 195 4-238 51-250 (487)
76 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.4E-26 163.1 3.8 227 11-261 70-315 (336)
77 3g06_A SSPH2 (leucine-rich rep 99.8 5.1E-19 1.7E-23 159.3 18.6 217 11-265 61-286 (622)
78 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 141.8 12.1 177 14-263 10-189 (208)
79 3m19_A Variable lymphocyte rec 99.8 4.6E-19 1.6E-23 142.8 14.9 171 35-254 14-194 (251)
80 3g06_A SSPH2 (leucine-rich rep 99.8 3.7E-19 1.3E-23 160.3 15.7 221 9-263 79-308 (622)
81 2o6q_A Variable lymphocyte rec 99.8 5.1E-19 1.7E-23 144.0 15.1 183 11-216 37-220 (270)
82 1p9a_G Platelet glycoprotein I 99.8 5.5E-19 1.9E-23 145.3 13.3 178 11-214 31-208 (290)
83 2ca6_A RAN GTPase-activating p 99.8 3.8E-21 1.3E-25 164.5 0.1 239 4-256 25-320 (386)
84 2xwt_C Thyrotropin receptor; s 99.8 3.2E-19 1.1E-23 142.6 11.2 179 6-236 50-237 (239)
85 3goz_A Leucine-rich repeat-con 99.8 3E-20 1E-24 157.6 4.6 236 9-257 20-302 (362)
86 4glp_A Monocyte differentiatio 99.8 9.6E-20 3.3E-24 151.3 7.2 215 9-265 62-296 (310)
87 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.9E-23 142.5 13.7 176 5-240 40-215 (291)
88 3cvr_A Invasion plasmid antige 99.8 1.2E-18 4.1E-23 155.3 12.7 185 12-242 60-247 (571)
89 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-20 8.6E-25 162.7 1.8 60 12-72 86-153 (461)
90 4ay9_X Follicle-stimulating ho 99.8 2.4E-18 8.2E-23 145.3 13.1 206 11-265 30-248 (350)
91 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 135.1 11.5 133 10-162 27-160 (208)
92 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 154.0 13.2 176 5-240 37-212 (605)
93 4ezg_A Putative uncharacterize 99.8 3.3E-18 1.1E-22 132.8 10.9 154 32-239 41-195 (197)
94 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-20 8.6E-25 162.7 -2.1 241 7-260 24-305 (461)
95 3goz_A Leucine-rich repeat-con 99.7 7E-19 2.4E-23 149.2 5.3 224 15-252 2-266 (362)
96 2ca6_A RAN GTPase-activating p 99.7 4.3E-19 1.5E-23 151.7 3.7 220 6-242 55-320 (386)
97 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-17 1.3E-21 128.9 14.7 129 14-164 14-143 (220)
98 3e6j_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 129.0 15.2 126 14-163 22-148 (229)
99 2v9t_B SLIT homolog 2 protein 99.7 7E-17 2.4E-21 127.4 14.5 129 14-164 14-142 (220)
100 2xot_A Amphoterin-induced prot 99.7 2.7E-17 9.4E-22 139.3 11.9 178 14-238 21-202 (361)
101 4ay9_X Follicle-stimulating ho 99.7 1.6E-17 5.5E-22 140.1 10.4 210 5-265 4-228 (350)
102 3cvr_A Invasion plasmid antige 99.7 5.9E-17 2E-21 144.4 14.4 170 10-226 79-255 (571)
103 2ast_B S-phase kinase-associat 99.7 7.1E-19 2.4E-23 147.4 0.8 219 11-252 47-284 (336)
104 1xeu_A Internalin C; cellular 99.7 8.9E-17 3.1E-21 130.3 13.2 170 10-240 18-187 (263)
105 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6.1E-21 125.1 13.5 134 11-164 32-166 (220)
106 1h6t_A Internalin B; cell adhe 99.7 1.5E-16 5.3E-21 130.8 13.4 156 2-215 59-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-16 9.6E-21 123.9 13.9 156 37-242 13-170 (220)
108 1m9s_A Internalin B; cell inva 99.7 4.1E-16 1.4E-20 140.2 15.2 158 1-216 55-212 (605)
109 2xot_A Amphoterin-induced prot 99.7 5.9E-16 2E-20 131.1 15.0 165 37-252 20-202 (361)
110 1dce_A Protein (RAB geranylger 99.7 4.1E-18 1.4E-22 152.2 1.4 191 7-242 345-550 (567)
111 3e6j_A Variable lymphocyte rec 99.7 9.8E-16 3.4E-20 121.6 13.6 134 10-164 39-173 (229)
112 1xeu_A Internalin C; cellular 99.6 3.2E-16 1.1E-20 127.0 8.8 163 33-254 17-187 (263)
113 1w8a_A SLIT protein; signaling 99.6 1.9E-15 6.4E-20 116.7 11.8 111 103-240 31-141 (192)
114 4b8c_D Glucose-repressible alc 99.6 5.9E-16 2E-20 142.2 9.6 155 26-211 215-369 (727)
115 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5.1E-21 146.2 5.5 71 95-169 218-288 (727)
116 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.5E-20 116.1 11.8 153 8-214 41-194 (197)
117 3ogk_B Coronatine-insensitive 99.6 1.2E-17 4.2E-22 150.1 -4.7 257 9-266 162-516 (592)
118 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 7.8E-20 113.5 8.2 136 9-167 22-163 (168)
119 1w8a_A SLIT protein; signaling 99.6 7.7E-15 2.6E-19 113.2 9.4 132 14-166 11-142 (192)
120 2ell_A Acidic leucine-rich nuc 99.6 1.6E-14 5.6E-19 108.8 10.6 134 34-240 23-162 (168)
121 1dce_A Protein (RAB geranylger 99.6 1.6E-16 5.5E-21 142.0 -2.0 179 4-232 365-567 (567)
122 2je0_A Acidic leucine-rich nuc 99.5 7.4E-15 2.5E-19 108.5 7.0 129 9-158 15-148 (149)
123 2wfh_A SLIT homolog 2 protein 99.5 9.2E-14 3.1E-18 107.2 13.0 103 38-163 13-115 (193)
124 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.2E-19 109.5 8.0 135 3-163 11-153 (176)
125 3ogk_B Coronatine-insensitive 99.5 6.7E-16 2.3E-20 138.8 -0.3 221 7-233 69-326 (592)
126 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 104.1 12.0 63 100-163 51-113 (177)
127 2p1m_B Transport inhibitor res 99.5 5.1E-16 1.8E-20 139.5 -4.3 54 200-254 431-496 (594)
128 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 103.4 7.8 105 99-233 40-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.9E-18 104.5 9.0 134 30-238 14-153 (176)
130 2wfh_A SLIT homolog 2 protein 99.5 8.9E-13 3E-17 101.7 13.1 127 14-164 13-140 (193)
131 1ds9_A Outer arm dynein; leuci 99.5 8.1E-16 2.8E-20 119.3 -4.2 62 7-72 14-81 (198)
132 2o6r_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 100.8 11.0 130 13-165 9-139 (177)
133 3sb4_A Hypothetical leucine ri 99.4 6.1E-13 2.1E-17 111.1 11.5 213 10-231 100-327 (329)
134 3sb4_A Hypothetical leucine ri 99.4 6E-13 2E-17 111.2 8.3 99 149-266 225-324 (329)
135 3g39_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 96.0 10.3 109 102-241 10-118 (170)
136 2p1m_B Transport inhibitor res 99.4 1E-14 3.5E-19 131.0 -5.0 63 9-72 103-167 (594)
137 3un9_A NLR family member X1; l 99.4 1.7E-14 5.8E-19 122.5 -3.4 61 11-72 72-137 (372)
138 2r9u_A Variable lymphocyte rec 99.3 6.3E-12 2.1E-16 95.2 10.4 109 103-242 14-122 (174)
139 3g39_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 93.7 10.8 106 13-164 11-116 (170)
140 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 93.0 11.3 104 14-163 15-118 (174)
141 1ds9_A Outer arm dynein; leuci 99.3 8.8E-14 3E-18 107.7 -2.1 127 6-156 43-180 (198)
142 4fdw_A Leucine rich hypothetic 99.2 1.1E-10 3.6E-15 100.0 13.2 220 6-240 131-360 (401)
143 3un9_A NLR family member X1; l 99.2 1.8E-13 6.3E-18 116.1 -4.4 167 34-240 71-254 (372)
144 4fdw_A Leucine rich hypothetic 99.2 4.2E-10 1.5E-14 96.3 13.2 218 6-237 153-382 (401)
145 2ifg_A High affinity nerve gro 99.0 8.4E-10 2.9E-14 92.6 9.8 96 89-214 20-116 (347)
146 2ifg_A High affinity nerve gro 99.0 1.2E-09 4.1E-14 91.6 9.2 33 15-49 12-46 (347)
147 2ra8_A Uncharacterized protein 98.8 3.7E-09 1.2E-13 89.1 4.9 198 10-250 106-341 (362)
148 4fs7_A Uncharacterized protein 98.7 3.1E-07 1.1E-11 78.3 13.0 214 5-233 156-374 (394)
149 2ra8_A Uncharacterized protein 98.7 6.3E-09 2.1E-13 87.7 2.1 185 7-236 135-341 (362)
150 4fs7_A Uncharacterized protein 98.6 4.8E-07 1.7E-11 77.1 13.7 126 5-136 65-195 (394)
151 1io0_A Tropomodulin; LRR prote 98.6 5.4E-09 1.8E-13 79.8 0.7 64 99-163 91-164 (185)
152 4gt6_A Cell surface protein; l 98.5 2.5E-06 8.5E-11 72.7 13.2 106 125-237 264-369 (394)
153 1io0_A Tropomodulin; LRR prote 98.4 2.4E-08 8.1E-13 76.1 0.1 118 97-238 32-164 (185)
154 3rw6_A Nuclear RNA export fact 98.3 2.2E-07 7.6E-12 74.6 1.6 18 32-49 167-184 (267)
155 3rw6_A Nuclear RNA export fact 98.2 2.6E-06 8.8E-11 68.4 6.4 42 8-49 167-210 (267)
156 4gt6_A Cell surface protein; l 98.1 0.00022 7.6E-09 60.5 16.8 249 5-266 57-360 (394)
157 4h09_A Hypothetical leucine ri 98.0 0.00017 5.7E-09 60.9 14.8 34 200-233 285-318 (379)
158 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.2E-11 64.0 2.1 90 126-238 61-153 (176)
159 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8E-11 64.0 1.9 86 9-112 59-150 (176)
160 1pgv_A TMD-1, tropomodulin TMD 97.5 2.5E-05 8.5E-10 59.5 1.2 117 9-163 39-170 (197)
161 4h09_A Hypothetical leucine ri 97.4 0.00074 2.5E-08 56.9 9.9 151 7-182 190-340 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 4.5E-05 1.5E-09 58.1 -0.5 115 99-237 39-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.5E-08 45.7 5.4 39 200-238 30-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.005 1.7E-07 43.5 4.8 54 15-72 12-66 (130)
165 2lz0_A Uncharacterized protein 73.2 3.2 0.00011 27.4 3.2 39 6-45 15-53 (100)
166 2lz0_A Uncharacterized protein 38.7 45 0.0015 21.7 4.2 44 116-160 10-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.1e-28 Score=228.64 Aligned_cols=253 Identities=30% Similarity=0.391 Sum_probs=182.4
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcce
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFT 85 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~ 85 (266)
+++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|. .+..+ ++|+.|++++|.. +..+..++.+..
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 67788888888888878888888888888888888888877777 77777 8888888888872 333445555544
Q ss_pred ecccCc----ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 86 ITMSWR----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 86 ~~~~~~----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
.+.+.+ .+|..+..+++|++|++++|++++.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 443332 46777888999999999999998888887776 8899999999999988889999999999999999999
Q ss_pred eeecCCccccccccchhHHHhhh--------------------------------------cc------cccccccCCCC
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESL--------------------------------------MF------TTKETSYSYKG 197 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~--------------------------------------~~------~~~~~~~~~~~ 197 (266)
+.+.+|..++.... ...+.... .. ..-....+...
T Consensus 550 l~g~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 550 FNGTIPAAMFKQSG-KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EESBCCGGGGTTTT-CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred cCCcCChHHhcccc-hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 98888876643111 00000000 00 00000111223
Q ss_pred cCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681 198 KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 198 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
..++.|+.||+++|.+++.+|..++.+++|+.|++++|.++|.+| .||+++|.++|.+|+++.++++|+
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 345677778888877777777777777777778887777777666 677777777777777777777653
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.9e-28 Score=203.07 Aligned_cols=223 Identities=27% Similarity=0.385 Sum_probs=109.3
Q ss_pred CCCcEEECCCccCcc--CCChhhhcCCCCcEEeccC-CcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681 11 RNLQELHMGANDLRG--TLPWCLENITSLKVLDLYL-NQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT 87 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ 87 (266)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+++.+|. .+..+ ++|++|++++|....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l-~~L~~L~Ls~n~l~~------------ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKL-TQLHYLYITHTNVSG------------ 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGC-TTCSEEEEEEECCEE------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcC-CCCCEEECcCCeeCC------------
Confidence 466777777777766 5667777777777777773 666666666 66666 777777777665310
Q ss_pred ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCC-CCCEEEccCCeeeecC
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN-SLKFLDLSHNQLTGEI 166 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~ 166 (266)
.+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+
T Consensus 116 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 116 ----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred ----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 12333344444444444444444334433333 44444444444444434444444443 4444444444444333
Q ss_pred CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681 167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---- 242 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 242 (266)
|..+. .+. ++.+++..+....... .....++.|+.|++++|.+++.++. +..+++|++|++++|.+++.+|
T Consensus 191 ~~~~~-~l~-L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 191 PPTFA-NLN-LAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp CGGGG-GCC-CSEEECCSSEEEECCG--GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ChHHh-CCc-ccEEECcCCcccCcCC--HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 33331 111 3333333332222111 1112244555555555555433322 4444555555555555554333
Q ss_pred ------eEEeeCCeeeecCCh
Q 048681 243 ------SLDVSYNNLNGKIPP 257 (266)
Q Consensus 243 ------~l~l~~n~i~~~~p~ 257 (266)
.|++++|.++|.+|+
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCC
T ss_pred cCcCCCEEECcCCcccccCCC
Confidence 455555555555554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.7e-27 Score=220.51 Aligned_cols=250 Identities=28% Similarity=0.375 Sum_probs=193.7
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhcc
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSML 78 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~ 78 (266)
.|+.|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++.+|. .+..+ ++|++|++++|.. +..+.
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l-~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYV-KTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-HHcCC-CCceEEEecCCcccCcCCHHHh
Confidence 356788999999999999999999999999999999999999999988888 78887 9999999999983 34455
Q ss_pred CCCCcceecccCc----ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681 79 HFPNSFTITMSWR----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF 154 (266)
Q Consensus 79 ~~~~~~~~~~~~~----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 154 (266)
.++++...+.+.+ .+|.++..+++|++|++++|.+++.+|..+.. +++|+.|++++|.+.+.+|..+.....+..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 5666655444332 56788999999999999999999899988877 899999999999998777766544322221
Q ss_pred ----------------------------------------------EEccCCeeeecCCccccccccchhHHHhhhcccc
Q 048681 155 ----------------------------------------------LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188 (266)
Q Consensus 155 ----------------------------------------------L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 188 (266)
++++.+.+.+.+|..+ ..+.+++.++++.+...
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~-~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC-SSSBCCCEEECCSSCCB
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh-hccccccEEECcCCccc
Confidence 1222233443333333 34455555555554433
Q ss_pred cccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChh
Q 048681 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQ 258 (266)
Q Consensus 189 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~ 258 (266)
... +.....++.|+.|+|++|.+++.+|..++.+++|+.|++++|+++|.+| .|++++|+++|.+|+.
T Consensus 646 g~i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 646 GYI--PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccC--CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 222 2223357899999999999999999999999999999999999998887 8999999999999974
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.8e-27 Score=196.32 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=178.2
Q ss_pred CCCcEEeccCCcccc--cCCCCcchhhccccccccccc-chhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681 35 TSLKVLDLYLNQLTR--NISSSPLLHLITSIEYLSTLN-YLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111 (266)
Q Consensus 35 ~~L~~L~l~~n~i~~--~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n 111 (266)
.+++.|++++|.+++ .+|. .+..+ +.|++|++++ |... ..+|..+..+++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l-~~L~~L~L~~~n~l~----------------~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANL-PYLNFLYIGGINNLV----------------GPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGC-TTCSEEEEEEETTEE----------------SCCCGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCC-CCCCeeeCCCCCccc----------------ccCChhHhcCCCCCEEECcCC
Confidence 689999999999998 7888 88888 9999999995 5421 245677889999999999999
Q ss_pred cccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccc
Q 048681 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET 191 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 191 (266)
.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.....+++.+++..+......
T Consensus 112 ~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 112 NVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp CCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 999888887776 8999999999999988899999999999999999999998888777533338888888877665333
Q ss_pred ccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhc
Q 048681 192 SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVEL 262 (266)
Q Consensus 192 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~ 262 (266)
...+ ..++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+| +|++++|.+.+.+|..+.++
T Consensus 191 ~~~~--~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 191 PPTF--ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp CGGG--GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ChHH--hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC
Confidence 3222 2244 9999999999998888899999999999999999986644 89999999999999999998
Q ss_pred ccCC
Q 048681 263 NALA 266 (266)
Q Consensus 263 ~~l~ 266 (266)
++|+
T Consensus 268 ~~L~ 271 (313)
T 1ogq_A 268 KFLH 271 (313)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8774
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6e-27 Score=196.28 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=170.0
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~ 88 (266)
..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|. .+..+ ++|++|++++|..
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l-~~L~~L~Ls~n~l--------------- 139 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQF-AGLETLTLARNPL--------------- 139 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGG-TTCSEEEEESCCC---------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhcc-CCCCEEECCCCcc---------------
Confidence 3588999999999999 77888999999999999999998 7887 88888 9999999999874
Q ss_pred cCcccccCcccccCccEEEccCccccccCCccccc--------cCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV--------YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
..+|..+..+++|++|++++|.+.+.+|..+.. .+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 140 --~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 140 --RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp --CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred --ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 356777888999999999998888788876642 3789999999999998 78888999999999999999
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
+++ .+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.
T Consensus 217 ~l~-~l~~~l~---------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 217 PLS-ALGPAIH---------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CCC-CCCGGGG---------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred CCC-cCchhhc---------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 998 4555432 256777777777777767777777777777777777777666
Q ss_pred CC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681 241 IP----------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 241 ~~----------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
+| .|++++|.+.+.+|+.++++++|+
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 55 678888887788888888887663
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5.6e-26 Score=198.32 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=32.1
Q ss_pred ccccCCCCCcEEECCCccCcc-CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 5 SGLFRLRNLQELHMGANDLRG-TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
+.|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n~ 114 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGL-ANLEVLTLTQCN 114 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTC-TTCCEEECTTSC
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCc-ccCCEEeCCCCC
Confidence 344455555555555554432 2234455555555555555555444344 44444 555555555554
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=201.53 Aligned_cols=255 Identities=20% Similarity=0.179 Sum_probs=131.2
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHF 80 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~ 80 (266)
+.|.++++|++|++++|.+.+..|.+|.++++|++|++++|.++. ++...|..+ ++|++|++++|.+ ...+..+
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGL-SNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTC
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCC-CCCCEEECCCCccccCChhHcccc
Confidence 455666666666666666666666666666666666666666653 333144444 6666666666652 1122333
Q ss_pred CCcceecccCccc----ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 048681 81 PNSFTITMSWRPF----RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLD 156 (266)
Q Consensus 81 ~~~~~~~~~~~~l----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 156 (266)
+++.....+.+.+ +..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 3333322222221 234555556666666666555 33333333355566666665555544444555555555555
Q ss_pred ccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681 157 LSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236 (266)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 236 (266)
+++|...+.++...+. ..+++.+++..+........ ....++.|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 207 l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHH--HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred CCCCccccccCccccc-CccccEEECcCCcccccCHH--HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 5554433333333221 12344444443332222111 11235566666666666664444556666666666666666
Q ss_pred ccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 237 LTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 237 l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
+++..| .|++++|.+++..+..|.++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 665433 56666666664444445555544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=5.1e-26 Score=205.41 Aligned_cols=256 Identities=22% Similarity=0.185 Sum_probs=181.6
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----h-hccCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----V-SMLHF 80 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~-~~~~~ 80 (266)
.|.++++|++|++++|.++ .+|..+..+++|++|++++|.+++..+. .+..+ ++|++|++++|... . .+..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-SASNF-PSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGC-TTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-hhhcc-CcCCEEECCCCCcccccchhhhhcc
Confidence 3677788888888888877 5677777788888888888887765555 66666 78888888877622 1 13444
Q ss_pred CCcceecccCccc------ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCC
Q 048681 81 PNSFTITMSWRPF------RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLK 153 (266)
Q Consensus 81 ~~~~~~~~~~~~l------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~ 153 (266)
+++...+.+.+.+ +..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+....+. .+..+++|+
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 5554444433332 455777788888888888887554544444 77888888888888655443 477888888
Q ss_pred EEEccCCeeeecCCccccccccchhHHHhhhccccccc-ccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeec
Q 048681 154 FLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET-SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNL 232 (266)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 232 (266)
.|++++|++.+.. ...+..+.+++.+++..+...... ........+++|+.|++++|.+++..|..+..+++|++|++
T Consensus 429 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 8888888887433 344466778888888777654422 22233445788999999999888777788888899999999
Q ss_pred ccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681 233 SHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 233 ~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
++|++++.+| .|++++|.+++..|+.+..+++|+
T Consensus 508 s~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSS
T ss_pred CCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCC
Confidence 9998887654 788899999877777777776653
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.5e-25 Score=195.67 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=31.3
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++|++|++++|.+.+..|..|.++++|++|++++|.+.+.++...|..+ ++|++|++++|.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n~ 90 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQ 90 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTCT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccCCEEeCCCCc
Confidence 4455555555555544455555555555555555555433332234444 555555555554
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.5e-25 Score=202.43 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=91.6
Q ss_pred cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchh
Q 048681 99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 178 (266)
.+++|++|++++|.++ .+|..+.. +++|++|++++|.+....+..+..+++|+.|++++|.+.+.++...+..+.+++
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3444555555555444 44444333 445555555555554333444445555555555555444344444444555666
Q ss_pred HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEee
Q 048681 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVS 247 (266)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~ 247 (266)
.+++..+........+.....++.|+.|++++|.+.+..|..+..+++|++|++++|++++..+ .|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 6665555544443333344456777777777777765566666677777777777777664422 66777
Q ss_pred CCeeeecCChhhhhcccC
Q 048681 248 YNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 248 ~n~i~~~~p~~~~~~~~l 265 (266)
+|.+.+..|..+.++++|
T Consensus 434 ~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TCCCBTTCTTTTTTCTTC
T ss_pred CCccCCcCHHHHhCCCCC
Confidence 777666666666666555
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=8.3e-26 Score=205.11 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=169.6
Q ss_pred CCcccc--CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccc-cCCCCcchhh-----cccccccccccchh
Q 048681 3 SISGLF--RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTR-NISSSPLLHL-----ITSIEYLSTLNYLV 73 (266)
Q Consensus 3 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~-----~~~L~~L~~~~~~~ 73 (266)
.|+.+. ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ .+|. .+..+ +++|++|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcC
Confidence 466777 88888889998888888888888888888888888887 776 6666 55553 26777777777762
Q ss_pred ---hh--hccCCCCcceecccC--------------------------cccccCcccccC-ccEEEccCccccccCCccc
Q 048681 74 ---LV--SMLHFPNSFTITMSW--------------------------RPFRMPIQSHWH-LATLYVSKKFFQGNIPLEI 121 (266)
Q Consensus 74 ---~~--~~~~~~~~~~~~~~~--------------------------~~l~~~~~~~~~-L~~L~l~~n~~~~~~~~~~ 121 (266)
+. .+..++++...+.+. ..+|..+..+++ |++|++++|.++ .+|..+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 22 233344333222111 234445555555 666666666665 555443
Q ss_pred ccc-CCCCcEEEcccccccccCCcccc-------CCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccccc
Q 048681 122 GVY-FPRLMYLNLSRNEFDGSIPSSIG-------DLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY 193 (266)
Q Consensus 122 ~~~-~~~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 193 (266)
... +++|+.|++++|.+.+..|..+. .+++|+.|++++|+++ .+|..++..+.+++.+++..+....++..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 321 22566666666666555555555 5567777777777776 56666666677777777776655533322
Q ss_pred CCCC-----cCCCCccEEEccCCcccccCCcccc--ccccCCeeecccccccccCC---------eEEe------eCCee
Q 048681 194 SYKG-----KPLNKMYGIDLSCNKLVGEIPPQIG--KLTRVRALNLSHNNLTGVIP---------SLDV------SYNNL 251 (266)
Q Consensus 194 ~~~~-----~~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~---------~l~l------~~n~i 251 (266)
.+.. ..++.|+.|++++|.++ .+|..+. .+++|+.|++++|++++.++ .|++ ++|.+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 2211 11227888888888888 6777776 78888888888888887432 6777 45777
Q ss_pred eecCChhhhhcccCC
Q 048681 252 NGKIPPQLVELNALA 266 (266)
Q Consensus 252 ~~~~p~~~~~~~~l~ 266 (266)
.+.+|.++.++++|+
T Consensus 555 ~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 555 LREWPEGITLCPSLT 569 (636)
T ss_dssp CCCCCTTGGGCSSCC
T ss_pred cccChHHHhcCCCCC
Confidence 778888888877764
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.8e-25 Score=207.59 Aligned_cols=256 Identities=18% Similarity=0.211 Sum_probs=172.6
Q ss_pred CCcccc--CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccc-cCCCCcchhhcc-------cccccccccc
Q 048681 3 SISGLF--RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTR-NISSSPLLHLIT-------SIEYLSTLNY 71 (266)
Q Consensus 3 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~-------~L~~L~~~~~ 71 (266)
.|+.+. ++++|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|. .+..+ + +|+.|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L-~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRL-ADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHH-HHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhh-hhcccccCCccEEEeeCC
Confidence 466666 99999999999999888999999999999999999998 876 6776 66665 4 8888888888
Q ss_pred hh---hh--hccCCCCcceecc---cCcccccCcccccCccEEEccCccccccCCccccccCCC-CcEEEcccccccccC
Q 048681 72 LV---LV--SMLHFPNSFTITM---SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR-LMYLNLSRNEFDGSI 142 (266)
Q Consensus 72 ~~---~~--~~~~~~~~~~~~~---~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 142 (266)
.. +. .+..++++..++. ....+| .+..+++|++|++++|.+. .+|..+.. +++ |+.|++++|.+. .+
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cC
Confidence 73 32 3444554444322 223455 5566666666666666665 55555544 445 666666666654 44
Q ss_pred CccccCC-------------------------------CCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccc
Q 048681 143 PSSIGDL-------------------------------NSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET 191 (266)
Q Consensus 143 ~~~l~~l-------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 191 (266)
|..+... ++|+.|++++|+++ .+|..++..+.+++.|+++.+....++
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 4433322 24555666666555 455555556667777777766555433
Q ss_pred ccCCCCc-----CCCCccEEEccCCcccccCCcccc--ccccCCeeecccccccccCC---------eEEeeC------C
Q 048681 192 SYSYKGK-----PLNKMYGIDLSCNKLVGEIPPQIG--KLTRVRALNLSHNNLTGVIP---------SLDVSY------N 249 (266)
Q Consensus 192 ~~~~~~~-----~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~---------~l~l~~------n 249 (266)
...+... .++.|+.|+|++|.++ .+|..+. .+++|+.|++++|.+++.++ .|++++ |
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccc
Confidence 3322211 1238888888888888 7787776 78888888888888887533 788865 7
Q ss_pred eeeecCChhhhhcccCC
Q 048681 250 NLNGKIPPQLVELNALA 266 (266)
Q Consensus 250 ~i~~~~p~~~~~~~~l~ 266 (266)
.+.+.+|.++.++++|+
T Consensus 793 ~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLI 809 (876)
T ss_dssp BCCCCCCTTGGGCSSCC
T ss_pred cccccChHHHhcCCCCC
Confidence 77888888888887764
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.6e-25 Score=203.17 Aligned_cols=229 Identities=18% Similarity=0.225 Sum_probs=164.9
Q ss_pred CCccccCCCCCcEEECCCccCccC-----------------CChhhh--cCCCCcEEeccCCcccccCCCCcchhhcccc
Q 048681 3 SISGLFRLRNLQELHMGANDLRGT-----------------LPWCLE--NITSLKVLDLYLNQLTRNISSSPLLHLITSI 63 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L 63 (266)
.|+.|.++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|. .+..+ ++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l-~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKAL-PEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTC-SSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcC-CCC
Confidence 366799999999999999999975 899988 999999999999999999998 89888 999
Q ss_pred cccccccch------hhhhccCC------CCcce---ecccCccccc--CcccccCccEEEccCccccccCCccccccCC
Q 048681 64 EYLSTLNYL------VLVSMLHF------PNSFT---ITMSWRPFRM--PIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126 (266)
Q Consensus 64 ~~L~~~~~~------~~~~~~~~------~~~~~---~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 126 (266)
++|++++|. ++..+..+ +++.. .......+|. .+..+++|++|++++|.+++.+| .+.. ++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CC
Confidence 999999996 23333332 44444 3344557888 88999999999999999998888 5554 78
Q ss_pred CCcEEEcccccccccCCccccCCCC-CCEEEccCCeeeecCCccccc-cccchhHHHhhhcccccccccCCC-----CcC
Q 048681 127 RLMYLNLSRNEFDGSIPSSIGDLNS-LKFLDLSHNQLTGEIPKHLAI-GCFNLEYLVESLMFTTKETSYSYK-----GKP 199 (266)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~-----~~~ 199 (266)
+|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..+.. .+.+++.+++..+......+..+. ...
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 9999999999998 78888888888 999999999988 67765432 233677777666654432221111 012
Q ss_pred CCCccEEEccCCcccccCCcc-ccccccCCeeeccccccc
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~ 238 (266)
+++|+.|++++|.++ .+|.. +..+++|++|++++|.++
T Consensus 432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 345555555555555 33332 233444444444444444
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.5e-25 Score=192.43 Aligned_cols=250 Identities=16% Similarity=0.132 Sum_probs=184.8
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCCcce
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPNSFT 85 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~~~~ 85 (266)
.++++.|++++|.+.+..+..|.++++|++|++++|.+++..|. .|..+ ++|++|++++|.. +.. +..++++..
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCC-ccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 36899999999999988899999999999999999999977677 78888 9999999999973 221 234455544
Q ss_pred ecccCcc----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 86 ITMSWRP----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 86 ~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
.+.+.+. .+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 4444333 245567777888888888877744444443 37788888888887764444557777888888888887
Q ss_pred eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC-ccccccccCCeeeccccccccc
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP-PQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
+.+ ++...+..+.+++.+++..+..... .+.......+|+.|++++|.++ .+| ..+..+++|+.|++++|.+++.
T Consensus 188 i~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 188 INA-IRDYSFKRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CCE-ECTTCSCSCTTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CcE-eChhhcccCcccceeeCCCCccccc--cCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCcc
Confidence 774 4444446677777777665432221 1111222348999999999998 455 5688999999999999999866
Q ss_pred CC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681 241 IP----------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 241 ~~----------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
.+ +|++++|.+.+..|..|.++++|+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 44 899999999998999999888774
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=9.6e-25 Score=179.32 Aligned_cols=230 Identities=19% Similarity=0.172 Sum_probs=173.5
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
.++|++|++++|.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|...
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~l--------------- 93 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGL-ALLEQLDLSDNAQL--------------- 93 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSCTTC---------------
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCc-cCCCEEeCCCCCCc---------------
Confidence 56899999999999988888899999999999999999876666 78777 99999999998511
Q ss_pred Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681 90 WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 90 ~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
..+ +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++.
T Consensus 94 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 170 (285)
T 1ozn_A 94 -RSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170 (285)
T ss_dssp -CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred -cccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCH
Confidence 122 3456677888888888888874334333 34788888888888887555566778888888888888887 4555
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
..+..+.+++.+++..+........ ....++.|+.|++++|.+++..+..+..+++|+.|++++|++...-+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHh--HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 5456677777777776655444322 23347889999999999886555568888999999999998885433
Q ss_pred ---eEEeeCCeeeecCChhhhh
Q 048681 243 ---SLDVSYNNLNGKIPPQLVE 261 (266)
Q Consensus 243 ---~l~l~~n~i~~~~p~~~~~ 261 (266)
.+..+.+.+....|+.+.+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTT
T ss_pred HHHhcccccCccccCCchHhCC
Confidence 4566677777778877755
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.5e-24 Score=180.63 Aligned_cols=245 Identities=16% Similarity=0.149 Sum_probs=175.5
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccC-CCCcceecc-
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLH-FPNSFTITM- 88 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~~~~~~~- 88 (266)
++|++|++++|.+....|..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|....-... .+.+...+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPL-RKLQKLYISKNHLVEIPPNLPSSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTC-TTCCEEECCSSCCCSCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCc-CCCCEEECCCCcCCccCccccccCCEEECC
Confidence 6788889998888877778888889999999999888866566 67777 8889999888873211111 123322222
Q ss_pred --cCccccc-CcccccCccEEEccCccccc--cCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 89 --SWRPFRM-PIQSHWHLATLYVSKKFFQG--NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 89 --~~~~l~~-~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
....++. .+..+++|++|++++|.++. ..+..+.. + +|+.|++++|.+. .+|..+. ++|+.|++++|+++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCC
Confidence 2233443 36677888888888887752 23333332 4 7888888888876 4555443 68888889888887
Q ss_pred ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-
Q 048681 164 GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP- 242 (266)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 242 (266)
+ ++...+..+.+++.+++..+......... ...++.|+.|++++|.++ .+|..+..+++|++|++++|++++..+
T Consensus 207 ~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 207 A-IELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp C-CCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred c-cCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 4 44444467788888888877655544322 234789999999999998 788889999999999999999986532
Q ss_pred ---------------eEEeeCCeee--ecCChhhhhcccCC
Q 048681 243 ---------------SLDVSYNNLN--GKIPPQLVELNALA 266 (266)
Q Consensus 243 ---------------~l~l~~n~i~--~~~p~~~~~~~~l~ 266 (266)
.+++++|++. +..|..|..+++|+
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 7899999987 56778888887764
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8.9e-24 Score=177.08 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=178.2
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhc-cCCCCcceeccc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSM-LHFPNSFTITMS 89 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~~~~~~~~ 89 (266)
++|++|++++|.+++..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|....-. ...+.+.....+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCC-CCCCEEECCCCcCCccChhhcccccEEECC
Confidence 6788888888888877777888888888888888888866566 77777 88888888888732111 111233333333
Q ss_pred C---cccc-cCcccccCccEEEccCccccc--cCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 90 W---RPFR-MPIQSHWHLATLYVSKKFFQG--NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 90 ~---~~l~-~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
. ..++ ..+..+++|++|++++|.+.. ..+..+. .+++|+.|++++|.+. .+|..+. ++|+.|++++|+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 2 2222 346778889999999988853 3343444 4889999999999887 4555543 78999999999888
Q ss_pred ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-
Q 048681 164 GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP- 242 (266)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 242 (266)
+..+ ..+..+.+++.+++..+........ ....++.|+.|++++|.++ .+|..+..+++|++|++++|++++..+
T Consensus 206 ~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 206 KVDA-ASLKGLNNLAKLGLSFNSISAVDNG--SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp EECT-GGGTTCTTCCEEECCSSCCCEECTT--TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred ccCH-HHhcCCCCCCEEECCCCcCceeChh--hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 5444 3446778888888877765554432 2334789999999999998 788889999999999999999986532
Q ss_pred ---------------eEEeeCCeeee--cCChhhhhcccC
Q 048681 243 ---------------SLDVSYNNLNG--KIPPQLVELNAL 265 (266)
Q Consensus 243 ---------------~l~l~~n~i~~--~~p~~~~~~~~l 265 (266)
.+++++|++.. ..|..|..+.++
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 79999999863 456677766654
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2e-24 Score=181.00 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=141.7
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCC
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPN 82 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 82 (266)
.|+.+.++++|++|++++|.+. .+|..|..+++|++|++++|.++ .+|. .+..+ ++|++|++++|.....+..
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l-~~L~~L~L~~n~~~~~~p~--- 168 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASL-NRLRELSIRACPELTELPE--- 168 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGC-TTCCEEEEEEETTCCCCCS---
T ss_pred cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcC-cCCCEEECCCCCCccccCh---
Confidence 3566888999999999999999 88999999999999999999998 7887 88888 9999999999873222110
Q ss_pred cceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 83 SFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.+. ...++..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus 169 ~~~----~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLA----STDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CSE----EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTT
T ss_pred hHh----hccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcc
Confidence 000 0112233455788888888888887 77777665 788888888888887 5666788888888888888887
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.+.+|..+ .. +++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|
T Consensus 242 ~~~~p~~~-~~--------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 242 LRNYPPIF-GG--------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CCBCCCCT-TC--------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred hhhhHHHh-cC--------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 76666544 22 3455555555555444555555555555555555555554444
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-24 Score=180.06 Aligned_cols=222 Identities=22% Similarity=0.224 Sum_probs=114.7
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccC--CCCcchhhcccccccccccchh---hhhccCCCCcce
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNI--SSSPLLHLITSIEYLSTLNYLV---LVSMLHFPNSFT 85 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~~L~~L~~~~~~~---~~~~~~~~~~~~ 85 (266)
++|++|++++|.+....+..|+++++|++|++++|.++... +. .+..+ ++|++|++++|.. +..+..++.+..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~-~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGT-TSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSC-SCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccc-cccCEEECCCCccccChhhcCCCCCCCE
Confidence 68999999999998666666889999999999999887421 33 45555 8999999998873 122223333332
Q ss_pred ecccCc---ccc--cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc-cCCccccCCCCCCEEEccC
Q 048681 86 ITMSWR---PFR--MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG-SIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 86 ~~~~~~---~l~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 159 (266)
.+.+.+ .++ ..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+.+ ..|..+..+++|+.|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 222221 122 13444455555555555554332222222 4455555555555542 2444455555555555555
Q ss_pred CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc-cCCeeeccccccc
Q 048681 160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT-RVRALNLSHNNLT 238 (266)
Q Consensus 160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~ 238 (266)
|++++..+.. +..+.+++.+++..+.........+ ..+++|+.|++++|.+++..+..+..++ +|++|++++|+++
T Consensus 185 n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5554322222 2334444444444443332222111 1234444444444444444444444442 4444444444444
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.6e-24 Score=193.34 Aligned_cols=138 Identities=22% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 204 (266)
+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+...+..+.+++.+++..+........ ....+++|+
T Consensus 375 ~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~ 451 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLN 451 (606)
T ss_dssp CSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCC
T ss_pred CCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh--hhcCCCCCC
Confidence 444444444444443 23344555555555555555555433323334455555555554443322211 122345555
Q ss_pred EEEccCCccccc-CCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 205 GIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 205 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|++++|.+++. +|..+..+++|++|++++|.+++.+| .|++++|.+++..|..+.++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 555555555532 44445555555555555555554433 45555555555445555554444
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8.5e-24 Score=177.21 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=166.4
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcceec
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTIT 87 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~~ 87 (266)
+++.++++++.+. .+|..+. +++++|++++|.+++..+. .+..+ ++|++|++++|.+ +..+..++.+...+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDG-DFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChh-hhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 7899999999988 5565554 7899999999999965554 67777 9999999999983 23344555554443
Q ss_pred cc---CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCee
Q 048681 88 MS---WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG--SIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 88 ~~---~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.+ ...+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 33 334444443 67888888888877 4444444447788888888888752 4566777888888888888888
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
+ .+|.... .+++.+++..+......... ...++.|+.|++++|.+++..+..+..+++|++|++++|+++..++
T Consensus 184 ~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 184 T-TIPQGLP---PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp C-SCCSSCC---TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred c-cCCcccc---ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 7 4655443 56666676666554443222 2346788888888888886666678888888888888888875433
Q ss_pred ---------eEEeeCCeeeecCChhhh
Q 048681 243 ---------SLDVSYNNLNGKIPPQLV 260 (266)
Q Consensus 243 ---------~l~l~~n~i~~~~p~~~~ 260 (266)
.|++++|.|++.-+..|.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred hhccCCCcCEEECCCCcCCccChhhcC
Confidence 788888888865555553
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.8e-25 Score=194.66 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=35.8
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
.|.++++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|. . .+ ++|++|++++|.
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l-~~L~~L~L~~N~ 101 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC-H--PT-VNLKHLDLSFNA 101 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC-C--CC-CCCSEEECCSSC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc-c--cc-CCccEEeccCCc
Confidence 4556666666666666666555666666666666666666655 3443 2 23 555555555554
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-24 Score=183.52 Aligned_cols=244 Identities=18% Similarity=0.129 Sum_probs=140.5
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCCCCcc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHFPNSF 84 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~~~~~ 84 (266)
.+++++.++++++.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|.+. ..+..++.+.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 356777777777777755555567777777777777777654444 56565 77777777776621 1122222222
Q ss_pred eecc---cCcccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 85 TITM---SWRPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 85 ~~~~---~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
..+. ....+|.. +..+++|++|++++|.+.+ +++..+..+++|+.|++++|.+... .+..+++|+.+++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 2211 22334433 3556667777777766663 3333223366677777777666532 1223333333333333
Q ss_pred eeee------------------cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccc
Q 048681 161 QLTG------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIG 222 (266)
Q Consensus 161 ~~~~------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 222 (266)
.+++ .++.. ...+++.+++..+...... ....++.|++|++++|.+++..|..+.
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhHcc
Confidence 3321 11111 1123444444444333321 223467888888888888866677788
Q ss_pred ccccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681 223 KLTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 223 ~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
.+++|++|++++|++++.++ .|++++|.+. .+|..+..+++|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 88888888888888875422 7888888887 6777777666653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.7e-24 Score=192.67 Aligned_cols=63 Identities=24% Similarity=0.177 Sum_probs=38.0
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
+.|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|. . .+ ++|++|++++|.
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l-~~L~~L~Ls~N~ 132 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PM-ASLRHLDLSFND 132 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECS-C--CC-TTCSEEECCSSC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCc-c--cc-ccCCEEECCCCC
Confidence 35566666666666666666666666666666666666666665 3444 2 33 555555555555
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.9e-24 Score=184.79 Aligned_cols=217 Identities=20% Similarity=0.204 Sum_probs=141.6
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
+++++|++++|.+.+..+..|.++++|++|++++|.+++..+. .|..+ ++|++|++++|.+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l----------------- 135 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGL-ASLNTLELFDNWL----------------- 135 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSSCC-----------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCc-ccCCEEECCCCcC-----------------
Confidence 5788888888888888888888888888888888888865555 67776 8888888888763
Q ss_pred cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681 91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNE-FDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|. +....+..+..+++|+.|++++|+++ .+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence 1222 23556677777777777776 4555444447777777777743 33223345667777777777777776 3432
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
...+.+++.++++.+.........+ ..+++|+.|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus 214 --~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 214 --LTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred --ccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 2344455555555544433322222 235667777777777665556666666777777777776665433
Q ss_pred ----eEEeeCCeee
Q 048681 243 ----SLDVSYNNLN 252 (266)
Q Consensus 243 ----~l~l~~n~i~ 252 (266)
.|++++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 5666666654
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-25 Score=185.30 Aligned_cols=225 Identities=21% Similarity=0.186 Sum_probs=170.0
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI 86 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~ 86 (266)
+..+++|++|++++|.+....|..|..+++|++|++++|.+++.. .+..+ ++|++|++++|....
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l-~~L~~L~Ls~n~l~~----------- 94 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESL-STLRTLDLNNNYVQE----------- 94 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTC-TTCCEEECCSSEEEE-----------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhc-CCCCEEECcCCcccc-----------
Confidence 346779999999999999888899999999999999999998644 36666 999999999987311
Q ss_pred cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681 87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 166 (266)
+...++|++|++++|.+++ ++.. .+++|+.|++++|.+....+..+..+++|+.|++++|++++..
T Consensus 95 ----------l~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 95 ----------LLVGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp ----------EEECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred ----------ccCCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 1123678888888888773 3322 2567888888888887555666777788888888888887555
Q ss_pred CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681 167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---- 242 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 242 (266)
+..+...+.+++.++++.+......... .+++|++|++++|.++ .+|..+..+++|++|++++|.+++.++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccccc----ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhc
Confidence 5555556677777777777655553222 2788999999999998 456668889999999999999886543
Q ss_pred -----eEEeeCCeee-ecCChhhhhcccC
Q 048681 243 -----SLDVSYNNLN-GKIPPQLVELNAL 265 (266)
Q Consensus 243 -----~l~l~~n~i~-~~~p~~~~~~~~l 265 (266)
.|++++|.+. +.+|..+..++.|
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 8999999988 6677766665543
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=182.46 Aligned_cols=217 Identities=18% Similarity=0.164 Sum_probs=146.4
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
++++.|++++|.+....+..|.++++|++|++++|.++...+. .|..+ ++|++|++++|.+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l-~~L~~L~L~~n~l----------------- 124 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGL-ANLNTLELFDNRL----------------- 124 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTC-SSCCEEECCSSCC-----------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCC-ccCCEEECCCCcC-----------------
Confidence 5688888888888877778888888888888888888754444 66666 8888888888763
Q ss_pred cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccc-cccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681 91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEF-DGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.. ....+..+..+++|+.|++++|+++ .+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC
T ss_pred CeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc
Confidence 2222 23566677888888888776 45554444477788888877443 3233346677778888888888776 4543
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
+..+.+++.|+++.+........ ....+++|+.|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus 203 --~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 203 --LTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp --CTTCSSCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred --cCCCcccCEEECCCCccCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 24455566666655544433322 22336777777777777776666667777777777777777775543
Q ss_pred ----eEEeeCCeee
Q 048681 243 ----SLDVSYNNLN 252 (266)
Q Consensus 243 ----~l~l~~n~i~ 252 (266)
.|++++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 6777777764
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.5e-23 Score=191.72 Aligned_cols=251 Identities=20% Similarity=0.124 Sum_probs=132.0
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh---h-hccCCCCccee
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL---V-SMLHFPNSFTI 86 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~---~-~~~~~~~~~~~ 86 (266)
+++++|++++|.+.+..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|... . .+..++++...
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcc-cCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 6889999999999887777899999999999999999876666 77777 89999999888631 1 12222222222
Q ss_pred cccC---cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcccc--CCCCCCEEEccCC
Q 048681 87 TMSW---RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIG--DLNSLKFLDLSHN 160 (266)
Q Consensus 87 ~~~~---~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n 160 (266)
+.+. ..++ ..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+.+..+..+. .+++|+.|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 2111 1222 23444444555555554444322222222 44455555554444422222221 2344455555554
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCC-CCcCCCCccEEEccCCcccccCCcccccccc--CCeeecccccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSY-KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR--VRALNLSHNNL 237 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l 237 (266)
++++..+ ..+..+.+++.+.+..+.......... .....+.|+.|++++|.+.+..|..+..++. |+.|++++|.+
T Consensus 182 ~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 182 QIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred cccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 4442222 211222222222211111000000000 0001245666677777666555666665544 77777777766
Q ss_pred cccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 238 TGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 238 ~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
++.++ .|++++|.+.+..|..|.++++|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 65533 66777777766666666665554
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.6e-24 Score=194.26 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=75.9
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHFP 81 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~~ 81 (266)
.|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|. .|..+ ++|++|++++|... ..+..++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGL-TSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTC-TTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCc-ccCCEEEccCCccccccccccCCCC
Confidence 466677777777777777766666677777777777777777655555 66666 67777777776621 2233344
Q ss_pred CcceecccCc-----ccccCcccccCccEEEccCccccccCCccccccCCC----CcEEEccccccc
Q 048681 82 NSFTITMSWR-----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR----LMYLNLSRNEFD 139 (266)
Q Consensus 82 ~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~----L~~L~l~~~~~~ 139 (266)
++...+.+.+ .+|..+..+++|++|++++|.+++..+..+.. +.+ +.++++++|.+.
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCC
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcc
Confidence 4433322221 24555666666666666666666433333322 222 335666666554
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.9e-24 Score=187.46 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=47.6
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc-cCCCCcchhhcccccccccccch
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++.|.++++|++|++++|.++. +|.. .+++|++|++++|.+++ .+|. .+..+ ++|++|++++|.
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l-~~L~~L~L~~n~ 126 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNM-SQLKFLGLSTTH 126 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGC-TTCCEEEEEESS
T ss_pred hHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchh-hhccC-CcceEEEecCcc
Confidence 4567888888888888888874 4444 67888888888888875 3455 67666 788888887776
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4.3e-24 Score=198.46 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=142.6
Q ss_pred CCccccCCCCCcEEECCCccCcc-----------------CCChhhh--cCCCCcEEeccCCcccccCCCCcchhhcccc
Q 048681 3 SISGLFRLRNLQELHMGANDLRG-----------------TLPWCLE--NITSLKVLDLYLNQLTRNISSSPLLHLITSI 63 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L 63 (266)
.|+.|.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|. .+..+ ++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L-~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDL-PEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGC-SSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCC-CCC
Confidence 46789999999999999999997 2788877 999999999999999999997 88888 999
Q ss_pred cccccccch------hhhhccCC-------CCcce---ecccCccccc--CcccccCccEEEccCccccccCCccccccC
Q 048681 64 EYLSTLNYL------VLVSMLHF-------PNSFT---ITMSWRPFRM--PIQSHWHLATLYVSKKFFQGNIPLEIGVYF 125 (266)
Q Consensus 64 ~~L~~~~~~------~~~~~~~~-------~~~~~---~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 125 (266)
+.|++++|. ++..+..+ +++.. ....+..+|. .+..+++|++|++++|.++ .+| .+.. +
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-N 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT-T
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC-C
Confidence 999999996 23323322 24443 3344557888 8999999999999999998 888 5544 8
Q ss_pred CCCcEEEcccccccccCCccccCCCC-CCEEEccCCeeeecCCccccc-cccchhHHHhhhccc
Q 048681 126 PRLMYLNLSRNEFDGSIPSSIGDLNS-LKFLDLSHNQLTGEIPKHLAI-GCFNLEYLVESLMFT 187 (266)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 187 (266)
++|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..+.. ...+++.++++.+..
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence 89999999999998 88888999998 999999999998 67754421 122366666665544
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.4e-25 Score=192.53 Aligned_cols=222 Identities=21% Similarity=0.185 Sum_probs=171.9
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~ 88 (266)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+ ++|++|++++|.+..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l-~~L~~L~Ls~N~l~~------------- 94 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESL-STLRTLDLNNNYVQE------------- 94 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTC-TTCCEEECCSSEEEE-------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccC-CCCCEEEecCCcCCC-------------
Confidence 44589999999999998888999999999999999999986543 6666 999999999997311
Q ss_pred cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681 89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
+...++|++|++++|.+++. +.. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|.
T Consensus 95 --------l~~~~~L~~L~L~~N~l~~~-~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 95 --------LLVGPSIETLHAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp --------EEECTTCCEEECCSSCCCCE-EEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred --------CCCCCCcCEEECcCCcCCCC-Ccc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 11226788888888888733 322 256788888888888766667777788888888888888766666
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
.+...+.+++.|+++.+......... .++.|+.|+|++|.+++ +|..+..+++|+.|++++|.+++.++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHhhhCCcccEEecCCCccccccccc----cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence 66556777888887777665553322 37899999999999995 56668899999999999999997544
Q ss_pred ---eEEeeCCeee-ecCChhhhhccc
Q 048681 243 ---SLDVSYNNLN-GKIPPQLVELNA 264 (266)
Q Consensus 243 ---~l~l~~n~i~-~~~p~~~~~~~~ 264 (266)
.|++++|.+. +.+|..+..++.
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 8999999988 667776666543
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=197.05 Aligned_cols=256 Identities=19% Similarity=0.125 Sum_probs=125.3
Q ss_pred ccccCCCCCcEEECCCccCccC-CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh----h--c
Q 048681 5 SGLFRLRNLQELHMGANDLRGT-LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV----S--M 77 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~--~ 77 (266)
..|.++++|++|++++|...+. .|.+|.++++|++|++++|.+++..|. .|..+ ++|++|++++|.... . +
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGL-FHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSC-SSCCCEECTTCCCSSCCSTTCCC
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCC-cccCEeeCcCCCCCcccccCccc
Confidence 4455566666666665533222 255556666666666666666554454 55555 566666666555211 1 2
Q ss_pred cCCCCcceecccCcc---c--ccCcccccCccEEEccCccccccCCccccccC--CCCcEEEcccccccccCCccccCCC
Q 048681 78 LHFPNSFTITMSWRP---F--RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF--PRLMYLNLSRNEFDGSIPSSIGDLN 150 (266)
Q Consensus 78 ~~~~~~~~~~~~~~~---l--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~ 150 (266)
..++++..++.+.+. + +..+..+++|++|++++|.+++..+..+.. + ++|+.|+++.|.+.+..+..+..++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcC
Confidence 233333332222211 1 123455555555555555554333333322 2 3455555555554433333333333
Q ss_pred C------CCEEEccCCeeeecCCcccccc-------------------------------------ccchhHHHhhhccc
Q 048681 151 S------LKFLDLSHNQLTGEIPKHLAIG-------------------------------------CFNLEYLVESLMFT 187 (266)
Q Consensus 151 ~------L~~L~l~~n~~~~~~~~~~~~~-------------------------------------~~~l~~l~~~~~~~ 187 (266)
+ |+.|++++|++++..+..+... ..+++.+++..+..
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 2 6666666665544333322211 02233333333322
Q ss_pred ccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCCh
Q 048681 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPP 257 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~ 257 (266)
.... +.....++.|+.|++++|.+++..+..|..+++|++|++++|.+++..+ .|++++|.+.+..|.
T Consensus 279 ~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 279 FSLN--SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CEEC--SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred cccC--hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 2221 1222335666666666666665555566666666666666666654433 666666666655555
Q ss_pred hhhhcccC
Q 048681 258 QLVELNAL 265 (266)
Q Consensus 258 ~~~~~~~l 265 (266)
.|.++++|
T Consensus 357 ~~~~l~~L 364 (844)
T 3j0a_A 357 TFKFLEKL 364 (844)
T ss_dssp CSCSCCCC
T ss_pred hhcCCCCC
Confidence 56655554
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=189.74 Aligned_cols=243 Identities=18% Similarity=0.128 Sum_probs=140.4
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh----hccCCCCcce
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV----SMLHFPNSFT 85 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~~~~~~~~~~ 85 (266)
+.+++.+++++|.+....+..|..+++|++|++++|.+++..+. .|..+ ++|++|++++|.+.. .+..++++..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 56667777777777665555666777777777777777654444 55555 777777777666211 1122222222
Q ss_pred ecc---cCcccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 86 ITM---SWRPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 86 ~~~---~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
++. .+..+|.. +..+++|++|++++|.+++..|..+.. +++|+.|++++|.+.+. + +..+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-CTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc-CCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence 111 11233333 355666666666666666333333333 66666666666666532 1 2233334443333333
Q ss_pred eee------------------cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccc
Q 048681 162 LTG------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK 223 (266)
Q Consensus 162 ~~~------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 223 (266)
+++ .++... ..+++.+++..+..... .....++.|+.|++++|.+++..|..+..
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 321 011111 12344444444433322 22334788888899888888777888888
Q ss_pred cccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681 224 LTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 224 l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
+++|+.|++++|.+++.++ .|++++|.+. .+|..+..+++|+
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 8889999998888876432 7888888888 6888777776653
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.8e-24 Score=173.16 Aligned_cols=210 Identities=21% Similarity=0.260 Sum_probs=165.5
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
...+..+++|+.|++++|.+.. ...+..+++|++|++++|.+++ + . .+..+ ++|++|++++|..
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l-~~L~~L~L~~n~l---------- 97 (272)
T 3rfs_A 34 AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-S-ALKEL-TNLTYLILTGNQL---------- 97 (272)
T ss_dssp EECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-G-GGTTC-TTCCEEECTTSCC----------
T ss_pred ccccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-h-hhcCC-CCCCEEECCCCcc----------
Confidence 3445678899999999999873 3458889999999999999875 2 2 56666 8899999988863
Q ss_pred ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
..++ ..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 98 -------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 98 -------QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp -------CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -------CccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 1222 23567788999999999988 45555444488999999999988855566678889999999999988
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
++ ++...+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 170 ~~-~~~~~~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 170 QS-LPEGVF--------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CC-CCTTTT--------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Cc-cCHHHh--------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 74 433321 136899999999999997667778999999999999999998877
Q ss_pred ---eEEeeCCeeeecCChhhhhccc
Q 048681 243 ---SLDVSYNNLNGKIPPQLVELNA 264 (266)
Q Consensus 243 ---~l~l~~n~i~~~~p~~~~~~~~ 264 (266)
.+++..|.+.|.+|.+++.+..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHHhCCCcccCcccccCC
Confidence 7889999999999999887653
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=5.4e-24 Score=176.54 Aligned_cols=226 Identities=21% Similarity=0.227 Sum_probs=171.7
Q ss_pred ccCCCCCcEEECCCccCccC--CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh-----hhccC
Q 048681 7 LFRLRNLQELHMGANDLRGT--LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL-----VSMLH 79 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~-----~~~~~ 79 (266)
|.++++|++|++++|.+... .+..+..+++|++|++++|.++ .++. .+..+ ++|++|++++|... ..+..
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~-~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~ 124 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGL-EQLEHLDFQHSNLKQMSEFSVFLS 124 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEE-EEETC-TTCCEEECTTSEEESSTTTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChh-hcCCC-CCCCEEECCCCcccccccchhhhh
Confidence 68999999999999998843 3678888999999999999998 4665 67777 99999999999832 23455
Q ss_pred CCCcceecccCcc----cccCcccccCccEEEccCccccc-cCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681 80 FPNSFTITMSWRP----FRMPIQSHWHLATLYVSKKFFQG-NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF 154 (266)
Q Consensus 80 ~~~~~~~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 154 (266)
++++...+.+.+. .+..+..+++|++|++++|.+.+ .+|..+.. +++|+.|++++|.+.+..+..+..+++|+.
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 5666555544433 34567888999999999999985 35655554 899999999999998777888999999999
Q ss_pred EEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCC--ccccccccCCeee
Q 048681 155 LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIP--PQIGKLTRVRALN 231 (266)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~ 231 (266)
|++++|+++ .++...+..+.+++.+++..+........... .+ +.|+.|++++|.++.... .....+...+.+.
T Consensus 204 L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 204 LNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp EECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred EECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 999999998 45555557888999999998876655443332 24 589999999999975422 2234455566655
Q ss_pred cccccccc
Q 048681 232 LSHNNLTG 239 (266)
Q Consensus 232 l~~n~l~~ 239 (266)
+..+.+..
T Consensus 281 ~~~~~~~C 288 (306)
T 2z66_A 281 VEVERMEC 288 (306)
T ss_dssp SCGGGCBE
T ss_pred cccccccc
Confidence 55555553
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4e-23 Score=174.13 Aligned_cols=243 Identities=21% Similarity=0.300 Sum_probs=136.1
Q ss_pred CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh--hhhccC
Q 048681 2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV--LVSMLH 79 (266)
Q Consensus 2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~~~ 79 (266)
.+++++..+++|++|++++|.+....+ |..+++|++|++++|.++. ++ .+..+ ++|++|++++|.+ ...+..
T Consensus 57 ~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~--~~~~l-~~L~~L~l~~n~i~~~~~~~~ 130 (347)
T 4fmz_A 57 ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS--ALQNL-TNLRELYLNEDNISDISPLAN 130 (347)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTC-TTCSEEECTTSCCCCCGGGTT
T ss_pred ccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch--HHcCC-CcCCEEECcCCcccCchhhcc
Confidence 345567777888888888887774433 7777778888888777764 22 45555 7777777777762 112333
Q ss_pred CCCcceecccCc---ccccCcccccCccEEEccCccccc---------------------cCCccccccCCCCcEEEccc
Q 048681 80 FPNSFTITMSWR---PFRMPIQSHWHLATLYVSKKFFQG---------------------NIPLEIGVYFPRLMYLNLSR 135 (266)
Q Consensus 80 ~~~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~~L~~L~l~~ 135 (266)
++++...+.+.. .....+..+++|++|++++|.+.+ .++. +. .+++|+.+++++
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~l~~L~~L~l~~ 208 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LA-SLTSLHYFTAYV 208 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GG-GCTTCCEEECCS
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-cc-CCCccceeeccc
Confidence 444333222221 111223344444444444444431 2222 21 244455555555
Q ss_pred ccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681 136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215 (266)
Q Consensus 136 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 215 (266)
|.+... +. +..+++|+.|++++|++++ .+. +..+.+++.+++..+...... ....+++|+.|++++|.+++
T Consensus 209 n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 209 NQITDI-TP-VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp SCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCCccCC
Confidence 544321 11 4556666666666666653 322 345566666666655444432 12346677777777777763
Q ss_pred cCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 216 EIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 216 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
+ ..+..+++|+.|++++|.+++..+ .|++++|.+++..| +..+++|
T Consensus 280 -~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 280 -I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp -C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred -C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 3 346677777777777777765433 77788887775444 5555554
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2.9e-23 Score=185.90 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=49.8
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCccccc-CCCCcchhhcccccccccccch
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRN-ISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++.|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. +|. .+..+ ++|++|++++|.
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l-~~L~~L~L~~n~ 157 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCK-EFGNL-TKLTFLGLSAAK 157 (562)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCG-GGGGC-TTCCEEEEECSB
T ss_pred HHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchH-hhccc-CcccEEecCCCc
Confidence 456888899999999999888 44544 788889999998888752 334 67777 888888888887
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-23 Score=179.40 Aligned_cols=237 Identities=19% Similarity=0.186 Sum_probs=161.1
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCC
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPN 82 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~ 82 (266)
|.++++|++|++++|.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|.. +.. +..+++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNV-PLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCC-CCCCEEECCCCccCcCCHHHhcCCCC
Confidence 57789999999999999988888999999999999999999865555 67777 9999999999883 222 244555
Q ss_pred cceecccCc---cc-ccCcccccCccEEEccCccccccCCcccccc----------------------------------
Q 048681 83 SFTITMSWR---PF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---------------------------------- 124 (266)
Q Consensus 83 ~~~~~~~~~---~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------------------- 124 (266)
+...+.+.+ .+ +..+..+++|++|++++|.+++ ++......
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 555444433 33 4458889999999999999873 33211110
Q ss_pred ---CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCC
Q 048681 125 ---FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN 201 (266)
Q Consensus 125 ---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 201 (266)
.++|+.|++++|.+.+ ...+..+++|+.|++++|++++..|..+ ..+.+++.+++..+...... .....++
T Consensus 222 ~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~---~~~~~l~ 295 (390)
T 3o6n_A 222 GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN---LYGQPIP 295 (390)
T ss_dssp CCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEEE---CSSSCCT
T ss_pred ccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCcccC---cccCCCC
Confidence 1134444444444432 2345666777777777777764444333 56667777777666544432 2224467
Q ss_pred CccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeee
Q 048681 202 KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNG 253 (266)
Q Consensus 202 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~ 253 (266)
.|+.|++++|.++ .+|..+..+++|+.|++++|.+++... .|++++|++..
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 7888888888777 566667777888888888887775432 78888888765
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.5e-22 Score=170.64 Aligned_cols=230 Identities=23% Similarity=0.304 Sum_probs=162.1
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---h----
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---S---- 76 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~---- 76 (266)
.+.+.++++|++|++++|.+... ..|..+++|++|++++|.+++. + .+..+ ++|++|++++|.... .
T Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~--~~~~l-~~L~~L~l~~n~~~~~~~~~~~l 154 (347)
T 4fmz_A 81 ISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-S--PLANL-TKMYSLNLGANHNLSDLSPLSNM 154 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-G--GGTTC-TTCCEEECTTCTTCCCCGGGTTC
T ss_pred chhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-h--hhccC-CceeEEECCCCCCcccccchhhC
Confidence 34467777777777777777642 3577777777777777776632 2 23444 666666666653111 1
Q ss_pred ------------------ccCCCCcceecccCcc---cccCcccccCccEEEccCccccccCCccccccCCCCcEEEccc
Q 048681 77 ------------------MLHFPNSFTITMSWRP---FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR 135 (266)
Q Consensus 77 ------------------~~~~~~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 135 (266)
+..++.+...+.+... ++. +..+++|+.+++++|.+.+ ++. +. .+++|++|++++
T Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~l~~ 230 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-ITP-VA-NMTRLNSLKIGN 230 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCS
T ss_pred CCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC-Cch-hh-cCCcCCEEEccC
Confidence 2222333332222222 233 6778899999999999873 333 33 488999999999
Q ss_pred ccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681 136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215 (266)
Q Consensus 136 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 215 (266)
|.+.. .+. +..+++|+.|++++|++++ ++ .+..+.+++.+++..+...... ....++.|+.|++++|.+++
T Consensus 231 n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 231 NKITD-LSP-LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCG
T ss_pred CccCC-Ccc-hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCC
Confidence 99974 343 8899999999999999984 42 3467888888888887666552 23458999999999999997
Q ss_pred cCCccccccccCCeeecccccccccCC--------eEEeeCCeee
Q 048681 216 EIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLN 252 (266)
Q Consensus 216 ~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~ 252 (266)
..+..+..+++|++|++++|++++.+| .|++++|.|+
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 788889999999999999999998765 8999999886
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7.2e-23 Score=178.73 Aligned_cols=213 Identities=21% Similarity=0.179 Sum_probs=160.1
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
++.|.++++|++|++++|.+....+..|.++++|++|++++|.++. ++...+..+ ++|++|++++|.+.
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~L~~N~l~--------- 160 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYL-SKLRELWLRNNPIE--------- 160 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSC-TTCCEEECCSCCCC---------
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhccc-CCCCEEECCCCCcc---------
Confidence 4678999999999999999999889999999999999999999985 444267677 99999999999741
Q ss_pred ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.++ ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+. .+| .+..+++|+.|++++|++
T Consensus 161 --------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 161 --------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp --------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred --------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence 122 235566777777777754444666555555777788888777776 333 456777777788877777
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
++ ++...+..+.+++.+++..+.........+ ..+++|+.|+|++|.+++..+..+..+++|+.|++++|++...
T Consensus 231 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 231 PE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SE-ECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cc-cCcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 74 333444667777777777665554443332 3478999999999999966666788899999999999998744
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=182.46 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=141.8
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCCccee
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPNSFTI 86 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~~~~~ 86 (266)
++|++|++++|.+....+..|.++++|++|++++|.+++..+. .+..+ ++|++|++++|.. +.. +..++++...
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCC-CCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 4788999999998877777888899999999999988865555 67777 8899999988873 111 2333333332
Q ss_pred cc---cCccccc--CcccccCccEEEccCcc-ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 87 TM---SWRPFRM--PIQSHWHLATLYVSKKF-FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 87 ~~---~~~~l~~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
+. ....++. .+..+++|++|++++|. +. .+++..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 22 2233443 45566666666666663 33 333322233666666666666666555666666666666666666
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCCC-CcCCCCccEEEccCCcccc----cCCccccccccCCeeecccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK-GKPLNKMYGIDLSCNKLVG----EIPPQIGKLTRVRALNLSHN 235 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n 235 (266)
+++ .++...+..+.+++.+++..+........... ......++.+++.++.+.+ .+|..+..+++|+.|++++|
T Consensus 209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 664 44444444455555555555544332211111 0112334444444444432 24445566667777777777
Q ss_pred cccccCC----------eEEeeCCeeeecCC
Q 048681 236 NLTGVIP----------SLDVSYNNLNGKIP 256 (266)
Q Consensus 236 ~l~~~~~----------~l~l~~n~i~~~~p 256 (266)
++++.++ .|++++|++.+..|
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6664332 66777777665433
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.2e-23 Score=186.04 Aligned_cols=137 Identities=24% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCcEEEcccccccccCC---ccccCCCCCCEEEccCCeeeecCCc--cccccccchhHHHhhhcccccccccCCCCcC
Q 048681 125 FPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLSHNQLTGEIPK--HLAIGCFNLEYLVESLMFTTKETSYSYKGKP 199 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 199 (266)
+++|+.|++++|.+.+..| ..+..+++|+.|++++|++++ ++. ..+..+.+++.++++.+....+ +.....
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~ 408 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPM---PDSCQW 408 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCC---CSCCCC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccC---Chhhcc
Confidence 4555555555555543321 223445555555555555542 221 2234455555555555543322 222223
Q ss_pred CCCccEEEccCCcccccCCcc------------------ccccccCCeeecccccccccCC--------eEEeeCCeeee
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQ------------------IGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNG 253 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~ 253 (266)
+++|++|++++|.++ .+|.. +..+++|++|++++|+++..++ .|++++|.+++
T Consensus 409 ~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCC
T ss_pred cccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCC
Confidence 444555555555443 12211 1356777777888777774432 78888888887
Q ss_pred cCChhhhhcccCC
Q 048681 254 KIPPQLVELNALA 266 (266)
Q Consensus 254 ~~p~~~~~~~~l~ 266 (266)
..|..+.++++|+
T Consensus 488 ~~~~~~~~l~~L~ 500 (549)
T 2z81_A 488 VPDGIFDRLTSLQ 500 (549)
T ss_dssp CCTTGGGGCTTCC
T ss_pred cCHHHHhcCcccC
Confidence 7777777777664
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=187.28 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=73.0
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHF 80 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~ 80 (266)
..|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+++..+. .|..+ ++|++|++++|... ..+..+
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGL-SSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTC-TTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCc-cccccccccccccccCCCcccccc
Confidence 3567778888888888877777777777888888888888877754444 66666 77888888777621 123444
Q ss_pred CCcceecccCc-----ccccCcccccCccEEEccCccccc
Q 048681 81 PNSFTITMSWR-----PFRMPIQSHWHLATLYVSKKFFQG 115 (266)
Q Consensus 81 ~~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~ 115 (266)
+++...+.+.+ .+|..+..+++|++|++++|.+++
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 55544333332 246667777777777777777653
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.9e-23 Score=183.50 Aligned_cols=118 Identities=22% Similarity=0.217 Sum_probs=60.8
Q ss_pred ccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc-ccCCcccccc
Q 048681 146 IGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV-GEIPPQIGKL 224 (266)
Q Consensus 146 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l 224 (266)
+..+++|+.|++++|++.+..+...+..+.+++.+++..+....... .....++.|+.|++++|.++ +.+|..+..+
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 44444555555555554433332333444455555544443322221 12223556666666666655 3455556666
Q ss_pred ccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681 225 TRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
++|++|++++|.+++..| .|++++|.+++..|..|.++++|
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 666666666666665533 56666666665555555555554
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.5e-22 Score=185.00 Aligned_cols=256 Identities=20% Similarity=0.222 Sum_probs=148.9
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc-cCCCCcchhh-cccccccccccchh----hhhccCC
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLHL-ITSIEYLSTLNYLV----LVSMLHF 80 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~-~~~L~~L~~~~~~~----~~~~~~~ 80 (266)
|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .++...+... .+.|+.|++++|.. +..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 3444455555555555554444445555555555555444211 1111111111 02444444444441 1112223
Q ss_pred CCcceecccCcc----cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc--ccCCccccCCCCCC
Q 048681 81 PNSFTITMSWRP----FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD--GSIPSSIGDLNSLK 153 (266)
Q Consensus 81 ~~~~~~~~~~~~----l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~ 153 (266)
+++...+.+.+. ++ ..+..+++|++|++++|++.+..+..+ ..+++|+.|++.+|.+. +..|..+..+++|+
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCC
Confidence 333333322222 22 334455566666666666553222222 23566666666666654 34567778888899
Q ss_pred EEEccCCeeeecCCccccccccchhHHHhhhcccccccccCC------CCcCCCCccEEEccCCcccccCCc-ccccccc
Q 048681 154 FLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSY------KGKPLNKMYGIDLSCNKLVGEIPP-QIGKLTR 226 (266)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~------~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~ 226 (266)
.|++++|+++ .+++..+..+.+++.++++.+.......... ....++.|+.|++++|.++ .+|. .|.++++
T Consensus 484 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~ 561 (680)
T 1ziw_A 484 ILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred EEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccC
Confidence 9999999887 5666666778888888888776655432221 1345789999999999998 5554 6888999
Q ss_pred CCeeecccccccccCC----------eEEeeCCeeeecCChhhh-hcccC
Q 048681 227 VRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLV-ELNAL 265 (266)
Q Consensus 227 L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~-~~~~l 265 (266)
|+.|++++|++++.++ .|++++|.+++..|..+. .+++|
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 9999999999886654 799999999976666555 45544
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=4.5e-24 Score=190.51 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=80.6
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCccee
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTI 86 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~ 86 (266)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+. .|..+ ++|++|++++|.. +..+..++++...
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hcccc-ccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 4566666666666555555566666666666666666544444 45554 5666666666551 1113334444333
Q ss_pred cccCcc-----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcccc--------------
Q 048681 87 TMSWRP-----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIG-------------- 147 (266)
Q Consensus 87 ~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------------- 147 (266)
+.+.+. .+..+..+++|++|++++|.+.+.+|+..+..+++|++|++++|.+.+..|..+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 322221 2344555666666666666533344433223355666666666665544444443
Q ss_pred ----------CCCCCCEEEccCCeeee
Q 048681 148 ----------DLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 148 ----------~l~~L~~L~l~~n~~~~ 164 (266)
.+++|+.|++++|++.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccccchhhHhhcccccEEEccCCcccc
Confidence 35677777777777653
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=4.6e-23 Score=192.73 Aligned_cols=256 Identities=18% Similarity=0.176 Sum_probs=179.5
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF 84 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~ 84 (266)
-.++|++|++++|.++...|..|+++++|++|++++|.+.+.++...|..+ ++|++|++++|.+ +..+..++++.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccC
Confidence 458899999999999988999999999999999999976656644378887 9999999999983 33344555554
Q ss_pred eecccCccc----ccC--cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCC--CCCCEEE
Q 048681 85 TITMSWRPF----RMP--IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDL--NSLKFLD 156 (266)
Q Consensus 85 ~~~~~~~~l----~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ 156 (266)
.++.+.+.+ +.. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 444433332 222 66677777777777777644333333337777777777777765556666555 6777777
Q ss_pred ccCCeeeecCCcccccccc------chhHHHhhhcccccc------------------------------------cccC
Q 048681 157 LSHNQLTGEIPKHLAIGCF------NLEYLVESLMFTTKE------------------------------------TSYS 194 (266)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~------~l~~l~~~~~~~~~~------------------------------------~~~~ 194 (266)
+++|.+.+..+..+. .+. .++.++++.+..... ....
T Consensus 181 L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 181 LAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp ECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred CCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 777777654443331 111 255555554421110 0011
Q ss_pred CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhccc
Q 048681 195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNA 264 (266)
Q Consensus 195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~ 264 (266)
+.....++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+ .|++++|.+.+..|..|.++++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 111124789999999999987778889999999999999999987754 8999999999888999988887
Q ss_pred CC
Q 048681 265 LA 266 (266)
Q Consensus 265 l~ 266 (266)
|+
T Consensus 340 L~ 341 (844)
T 3j0a_A 340 VA 341 (844)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=6.8e-23 Score=178.28 Aligned_cols=211 Identities=22% Similarity=0.237 Sum_probs=154.7
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
++.|.++++|++|++++|.+....+..|.++++|++|++++|.++. ++...|..+ ++|++|++++|.+.
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~L~~N~i~--------- 149 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYL-SKLKELWLRNNPIE--------- 149 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSC-SSCCEEECCSCCCC---------
T ss_pred HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhcc-ccCceeeCCCCccc---------
Confidence 3678899999999999999998888999999999999999999985 444267777 99999999999741
Q ss_pred ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.++ ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+. .+| .+..+++|+.|++++|++
T Consensus 150 --------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 150 --------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp --------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred --------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 111 234566677777777644444555554444677777777777775 344 356667777777777777
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
++..+ ..+..+.+++.+++..+.........+ ..+++|+.|+|++|.+++..+..+..+++|+.|++++|++.
T Consensus 220 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECT-TTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccCh-hhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 64333 334566677777666665554443322 34789999999999999666667888999999999999876
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.2e-23 Score=186.96 Aligned_cols=238 Identities=18% Similarity=0.186 Sum_probs=174.3
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCC
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPN 82 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~ 82 (266)
|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+. .|..+ ++|++|++++|.+ +.. +..+++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNV-PLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCC-CCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 56789999999999999988888999999999999999999875555 67777 9999999999982 222 245566
Q ss_pred cceecccCcc---c-ccCcccccCccEEEccCccccccCCcccccc----------------------------------
Q 048681 83 SFTITMSWRP---F-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---------------------------------- 124 (266)
Q Consensus 83 ~~~~~~~~~~---l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------------------- 124 (266)
+..++.+.+. + |..+..+++|++|++++|.+++ ++......
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 6554444333 3 4568889999999999999874 33221110
Q ss_pred ---CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCC
Q 048681 125 ---FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN 201 (266)
Q Consensus 125 ---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 201 (266)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+ ..+.+++.|++..+....+. .....++
T Consensus 228 ~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~---~~~~~l~ 301 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN---LYGQPIP 301 (597)
T ss_dssp CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCEEE---CSSSCCT
T ss_pred cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCCCC---cccccCC
Confidence 1234444555555432 3456778888999999988886555444 57788888888877655543 3334578
Q ss_pred CccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeeec
Q 048681 202 KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNGK 254 (266)
Q Consensus 202 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~~ 254 (266)
.|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.+. .|++++|++.+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 8999999999988 678878888999999999999886533 899999998764
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=9.4e-23 Score=171.01 Aligned_cols=235 Identities=17% Similarity=0.189 Sum_probs=152.7
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcceec
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTIT 87 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~~ 87 (266)
+++.++++++.+. .+|..+. ++|++|++++|.+++..+. .+..+ ++|++|++++|.+ +..+..++.+...+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKD-DFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHh-HhhCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 6899999999998 5566553 7999999999999976565 78887 9999999999983 23344444444433
Q ss_pred cc---CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCee
Q 048681 88 MS---WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG--SIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 88 ~~---~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
.+ ...+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|++
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 32 233444333 56677777777666 4444433446677777777776642 344555555 677777777766
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
+ .+|..+. .+++.+++..+........ ....++.|+.|++++|.+++..+..+..+++|++|++++|+++..++
T Consensus 185 ~-~l~~~~~---~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 185 T-GIPKDLP---ETLNELHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp S-SCCSSSC---SSCSCCBCCSSCCCCCCTT--SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred C-ccCcccc---CCCCEEECCCCcCCccCHH--HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 6 3554443 3555555555544433322 23346778888888888776555567778888888888887774433
Q ss_pred ---------eEEeeCCeeeecCChhhhh
Q 048681 243 ---------SLDVSYNNLNGKIPPQLVE 261 (266)
Q Consensus 243 ---------~l~l~~n~i~~~~p~~~~~ 261 (266)
.|++++|.+++..+..|..
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred hhhcCccCCEEECCCCCCCccChhHccc
Confidence 6888888887555555543
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.7e-22 Score=164.67 Aligned_cols=217 Identities=17% Similarity=0.120 Sum_probs=174.2
Q ss_pred CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92 (266)
Q Consensus 13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
-++++.+++.+. .+|..+ .++|++|++++|.+++..+. .+..+ ++|++|++++|.. ..
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~-~~L~~L~l~~n~l-----------------~~ 70 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAA-SFRAC-RNLTILWLHSNVL-----------------AR 70 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCC-----------------CE
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHH-HcccC-CCCCEEECCCCcc-----------------ce
Confidence 367899999888 445544 47999999999999965555 67777 9999999999864 12
Q ss_pred c-ccCcccccCccEEEccCcc-ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681 93 F-RMPIQSHWHLATLYVSKKF-FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170 (266)
Q Consensus 93 l-~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 170 (266)
+ +..+..+++|++|++++|. +. .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...
T Consensus 71 ~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 148 (285)
T 1ozn_A 71 IDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred eCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhH
Confidence 2 4557788999999999997 66 554444444899999999999998666788899999999999999998 566665
Q ss_pred cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------
Q 048681 171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------- 242 (266)
Q Consensus 171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 242 (266)
+..+.+++.+++..+......... ...++.|+.|++++|.+++..|..+..+++|+.|++++|.+++.++
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hccCCCccEEECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 677888999888877655444322 3347899999999999997778889999999999999999987654
Q ss_pred --eEEeeCCeeeecC
Q 048681 243 --SLDVSYNNLNGKI 255 (266)
Q Consensus 243 --~l~l~~n~i~~~~ 255 (266)
.|++++|++...-
T Consensus 227 L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCEEECCSSCEECSG
T ss_pred cCEEeccCCCccCCC
Confidence 7999999987543
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.7e-22 Score=163.92 Aligned_cols=209 Identities=18% Similarity=0.114 Sum_probs=157.9
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
++|++|++++|.++...+..|.++++|++|++++|.+++..+. .+..+ ++|++|++++|.....
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~-------------- 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSL-SHLSTLILTGNPIQSL-------------- 91 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-TTTTC-TTCCEEECTTCCCCEE--------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-HccCC-cCCCEEECCCCccCcc--------------
Confidence 4699999999999988888999999999999999999865554 67777 9999999999874111
Q ss_pred cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
.+..+..+++|++|++++|.+.+ ++......+++|++|++++|.+... +|..+..+++|+.|++++|++++ ++..
T Consensus 92 --~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 167 (276)
T 2z62_A 92 --ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCT 167 (276)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGG
T ss_pred --ChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHH
Confidence 12456778899999999999984 4443334488999999999999753 58889999999999999999985 4433
Q ss_pred ccccccchh----HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 170 LAIGCFNLE----YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 170 ~~~~~~~l~----~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.+..+.+++ .++++.+.........+ ...+|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc---CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 334444554 34444444433332222 23479999999999985545557888999999999999887655
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.3e-22 Score=174.45 Aligned_cols=128 Identities=25% Similarity=0.337 Sum_probs=65.5
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 204 (266)
+++|+.|++++|.+.. + ..+..+++|+.|++++|++.+. +. +..+.+++.+++..+....... ...++.|+
T Consensus 220 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~ 290 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISP----LAGLTALT 290 (466)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCS
T ss_pred cCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCcccc----ccCCCccC
Confidence 3344444444444331 1 2334444555555555544422 11 2344455555554444333322 22356666
Q ss_pred EEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeecCChhhhhcccC
Q 048681 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|++++|.+++ ++. +..+++|+.|++++|++++..| +|++++|.+.+. ..+.++++|
T Consensus 291 ~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 291 NLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp EEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred eEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 66666666663 222 5666777777777777665543 677777777642 356666555
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-23 Score=178.02 Aligned_cols=232 Identities=19% Similarity=0.175 Sum_probs=168.0
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh---h--hccCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL---V--SMLHF 80 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~---~--~~~~~ 80 (266)
.|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++ ++...+..+ ++|++|++++|... . .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCC-ccCCEEECCCCCCcccCchhhhccC
Confidence 58899999999999999998888899999999999999999985 554146666 99999999999832 1 23445
Q ss_pred CCcceeccc----Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCCE
Q 048681 81 PNSFTITMS----WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLKF 154 (266)
Q Consensus 81 ~~~~~~~~~----~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 154 (266)
+++...+.+ ...+ +..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+. ..+. .+..+++|+.
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCST-THHHHHHHHTTTEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCccc-cchhhhhhhcccccE
Confidence 555543332 3334 457888999999999999998666666665 889999999999986 4443 3446899999
Q ss_pred EEccCCeeeecCCcccc--ccccchhHHHhhhcccccc--cccCCCCcCCCCccEEEccCCcccccCCcc-ccccccCCe
Q 048681 155 LDLSHNQLTGEIPKHLA--IGCFNLEYLVESLMFTTKE--TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRA 229 (266)
Q Consensus 155 L~l~~n~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~ 229 (266)
|++++|++++..+..+. .....++.+.+..+...+. ...+.....+++|+.|++++|.++ .+|.. +..+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 99999999854333221 1122222222222211110 111122234789999999999999 66765 589999999
Q ss_pred eecccccccccCC
Q 048681 230 LNLSHNNLTGVIP 242 (266)
Q Consensus 230 L~l~~n~l~~~~~ 242 (266)
|++++|++++..|
T Consensus 306 L~L~~N~~~~~~~ 318 (353)
T 2z80_A 306 IWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEeeCCCccCcCC
Confidence 9999999998765
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=4.1e-23 Score=171.78 Aligned_cols=139 Identities=24% Similarity=0.244 Sum_probs=79.1
Q ss_pred CCCCCcEEECCCccCccCCChhh--hcCCCCcEEeccCCcccccCCCCcchhhc----ccccccccccchhhhhccCCCC
Q 048681 9 RLRNLQELHMGANDLRGTLPWCL--ENITSLKVLDLYLNQLTRNISSSPLLHLI----TSIEYLSTLNYLVLVSMLHFPN 82 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~----~~L~~L~~~~~~~~~~~~~~~~ 82 (266)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |. .+..+. ++|++|++++|.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l--------- 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHS--------- 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSC---------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCC---------
Confidence 56677777777777766666655 5667777777777776654 44 444442 5666666666653
Q ss_pred cceecccCccc-ccCcccccCccEEEccCcccccc--CCccc-cccCCCCcEEEcccccccc--cCC-ccccCCCCCCEE
Q 048681 83 SFTITMSWRPF-RMPIQSHWHLATLYVSKKFFQGN--IPLEI-GVYFPRLMYLNLSRNEFDG--SIP-SSIGDLNSLKFL 155 (266)
Q Consensus 83 ~~~~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L 155 (266)
..+ +..+..+++|++|++++|++.+. ++..+ +..+++|++|++++|.+.. ..+ ..+..+++|+.|
T Consensus 162 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 162 --------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp --------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred --------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 111 23455566666666666665433 12222 1235666666666666651 111 223455666666
Q ss_pred EccCCeeeecC
Q 048681 156 DLSHNQLTGEI 166 (266)
Q Consensus 156 ~l~~n~~~~~~ 166 (266)
++++|++++..
T Consensus 234 ~Ls~N~l~~~~ 244 (312)
T 1wwl_A 234 DLSHNSLRDAA 244 (312)
T ss_dssp ECTTSCCCSSC
T ss_pred ECCCCcCCccc
Confidence 66666666433
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.2e-21 Score=171.73 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=84.0
Q ss_pred ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681 100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179 (266)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 179 (266)
+++|++|++++|.+. .++ .+. .+++|+.|++++|.+.+..+ +..+++|+.|++++|++++ ++. ...+.+++.
T Consensus 220 l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 220 LTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAGLTALTN 291 (466)
T ss_dssp CTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSE
T ss_pred cCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccCCCccCe
Confidence 344444444444444 221 222 25667777777776653222 5666677777777776663 322 345566666
Q ss_pred HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCee
Q 048681 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNL 251 (266)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i 251 (266)
+++..+....... ...++.|+.|++++|.+++..| +..+++|+.|++++|++++... .|++++|.+
T Consensus 292 L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 292 LELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence 6666554444332 2335667777777776664333 5666677777777776665421 667777776
Q ss_pred eecCChhhhhcccC
Q 048681 252 NGKIPPQLVELNAL 265 (266)
Q Consensus 252 ~~~~p~~~~~~~~l 265 (266)
.+..| +..+++|
T Consensus 366 ~~~~~--~~~l~~L 377 (466)
T 1o6v_A 366 SDLTP--LANLTRI 377 (466)
T ss_dssp CBCGG--GTTCTTC
T ss_pred Cccch--hhcCCCC
Confidence 65444 5555544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=8.4e-24 Score=175.97 Aligned_cols=111 Identities=22% Similarity=0.186 Sum_probs=54.2
Q ss_pred cCCCCcEEeccCCcccccCCCCcc--hhhcccccccccccchhhhhccCCCCcceecccCcccccCcccc-----cCccE
Q 048681 33 NITSLKVLDLYLNQLTRNISSSPL--LHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSH-----WHLAT 105 (266)
Q Consensus 33 ~l~~L~~L~l~~n~i~~~~~~~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~L~~ 105 (266)
++++|++|++++|.+++.+|. .+ ..+ ++|++|++++|.. ..+|..+..+ ++|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~l-~~L~~L~Ls~N~l-----------------~~~~~~~~~l~~~~~~~L~~ 153 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP-PLLEATG-PDLNILNLRNVSW-----------------ATRDAWLAELQQWLKPGLKV 153 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC-CSSSCCS-CCCSEEEEESCBC-----------------SSSSSHHHHHHTTCCTTCCE
T ss_pred CcCCccEEEccCCcccchhHH-HHHHhcC-CCccEEEccCCCC-----------------cchhHHHHHHHHhhcCCCcE
Confidence 355555555555555544444 32 333 5555555555542 1112223333 55666
Q ss_pred EEccCccccccCCccccccCCCCcEEEccccccccc--CCccc--cCCCCCCEEEccCCeee
Q 048681 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS--IPSSI--GDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 106 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~~~ 163 (266)
|++++|.+.+..+..+.. +++|++|++++|.+.+. .+..+ ..+++|+.|++++|+++
T Consensus 154 L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVRV-FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp EEEESCSCCCCCTTTCCC-CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred EEeeCCCCccchHHHhcc-CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 666666665332233333 55666666666654322 12222 45566666666666654
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.6e-22 Score=162.12 Aligned_cols=204 Identities=22% Similarity=0.148 Sum_probs=143.0
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
.+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+. .+..+ ++|++|++++|.+.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l-~~L~~L~L~~n~l~----------- 68 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-TLMPY-TRLTQLNLDRAELT----------- 68 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTC-TTCCEEECTTSCCC-----------
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcC-CCCCEEECCCCccC-----------
Confidence 3678889999999999988 4455443 6899999999999866555 67777 89999999988731
Q ss_pred ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681 86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
.++.. ..+++|++|++++|.++ .+|..+.. +++|+.|++++|.++...+..+..+++|+.|++++|+++ .
T Consensus 69 ------~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 138 (290)
T 1p9a_G 69 ------KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138 (290)
T ss_dssp ------EEECC-SCCTTCCEEECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-C
T ss_pred ------cccCC-CCCCcCCEEECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-c
Confidence 11111 35567777777777776 66655443 677777777777777555566777777777777777776 4
Q ss_pred CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
++...+..+.+++.+++..+......... +..+++|+.|++++|.++ .+|..+....+|+.+++.+|++.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHH--hcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55555555666666666555444333221 123678888888888887 67777777778888888888765
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.3e-21 Score=169.24 Aligned_cols=212 Identities=19% Similarity=0.152 Sum_probs=127.3
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh-hhccCCCC
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL-VSMLHFPN 82 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~ 82 (266)
+..+.++++|++|++++|.+.+. | .|..+++|++|++++|.+++ + .+..+ ++|++|++++|... ..+..+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~---~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-L---DLSQN-TNLTYLACDSNKLTNLDVTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-C---CCTTC-TTCSEEECCSSCCSCCCCTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-E---ccccC-CCCCEEECcCCCCceeecCCCCc
Confidence 34566788888888888888754 4 57788888888888888775 2 25555 78888888887721 12444444
Q ss_pred cceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 83 SFTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 83 ~~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
+...+.+.+.+. ..+..+++|++|++++|.+++ ++ +.. +++|+.|++++|...+.+ .+..+++|+.|++++|+
T Consensus 108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~-l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSH-NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTT-CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--ccc-CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 444333332221 125666777777777777763 33 222 666777777766433233 35566667777777776
Q ss_pred eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
+++ +| ...+.+++.+++..+..... ....++.|+.|++++|.+++ +| +..+++|+.|++++|++++.
T Consensus 182 l~~-l~---l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 ITE-LD---VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCC-CC---CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred cce-ec---cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 663 33 33455555555555444332 12335666666666666663 44 55666666666666666544
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.9e-21 Score=156.00 Aligned_cols=202 Identities=21% Similarity=0.238 Sum_probs=103.4
Q ss_pred CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92 (266)
Q Consensus 13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
.++++++++.++ .+|..+. +++++|++++|.++...+. .|..+ ++|++|++++|.+ ..
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~ 75 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSK-AFHRL-TKLRLLYLNDNKL-----------------QT 75 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTT-SSSSC-TTCCEEECCSSCC-----------------SC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHH-HhcCC-CCCCEEECCCCcc-----------------Ce
Confidence 455555555555 2333332 4555556665555532222 44444 5555555555542 11
Q ss_pred ccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681 93 FRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 93 l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 171 (266)
++. .+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...+
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 153 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHc
Confidence 121 1234455555555555554 333333333555555555555555333444455555555555555554 3333333
Q ss_pred ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
..+.+++.+++..+......... ...+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCCcccceeEecCCcCcEeChhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 33444444444333322222111 12367788888888888754444577788888888888876543
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=9e-21 Score=171.46 Aligned_cols=70 Identities=27% Similarity=0.316 Sum_probs=58.9
Q ss_pred CCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhc-cc
Q 048681 196 KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL-NA 264 (266)
Q Consensus 196 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~-~~ 264 (266)
....+++|++|+|++|.+++..|..|.++++|++|++++|++++.++ .|++++|.|++..|+.+.++ ++
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 568 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTT
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCc
Confidence 34457899999999999997778889999999999999999987755 89999999998888888776 44
Q ss_pred C
Q 048681 265 L 265 (266)
Q Consensus 265 l 265 (266)
|
T Consensus 569 L 569 (635)
T 4g8a_A 569 L 569 (635)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=5.5e-21 Score=155.91 Aligned_cols=185 Identities=24% Similarity=0.221 Sum_probs=148.1
Q ss_pred CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681 2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 81 (266)
.+++++..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+. .+..+ ++|++|++++|..
T Consensus 54 ~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l-------- 121 (272)
T 3rfs_A 54 KSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-VFDKL-TNLKELVLVENQL-------- 121 (272)
T ss_dssp CCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT-TTTTC-TTCCEEECTTSCC--------
T ss_pred ccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh-HhcCC-cCCCEEECCCCcC--------
Confidence 4667889999999999999999853 4789999999999999999965444 56777 9999999999874
Q ss_pred CcceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 82 NSFTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 82 ~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
..++ ..+..+++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 122 ---------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 122 ---------QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp ---------CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ---------CccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 2222 33677899999999999998 566555555899999999999998666667889999999999999
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
++++..+..+ . .+++|+.|++++|.+.+. +++|+.++++.|.++|.
T Consensus 192 ~l~~~~~~~~-~--------------------------~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 192 QLKSVPDGVF-D--------------------------RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CCSCCCTTTT-T--------------------------TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG
T ss_pred cCCccCHHHH-h--------------------------CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc
Confidence 9985433322 1 267888899988877633 44688888888888887
Q ss_pred CC
Q 048681 241 IP 242 (266)
Q Consensus 241 ~~ 242 (266)
+|
T Consensus 238 ip 239 (272)
T 3rfs_A 238 VR 239 (272)
T ss_dssp BB
T ss_pred cc
Confidence 76
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.2e-20 Score=164.72 Aligned_cols=220 Identities=18% Similarity=0.173 Sum_probs=152.0
Q ss_pred cCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh-hccCCCCcceecccCcccc-cCccc
Q 048681 22 DLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV-SMLHFPNSFTITMSWRPFR-MPIQS 99 (266)
Q Consensus 22 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~ 99 (266)
......+..++.+++|++|++++|.+++ +| ++..+ ++|++|++++|.... .+..++++...+.+.+.+. ..+..
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 104 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITD-MT--GIEKL-TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTP 104 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGC-TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTT
T ss_pred CcCcccccChhHcCCCCEEEccCCCccc-Ch--hhccc-CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCC
Confidence 3444556678899999999999999985 44 57777 999999999998311 2444455444333333221 12667
Q ss_pred ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681 100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179 (266)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 179 (266)
+++|++|++++|.+++ ++ +. .+++|+.|++++|.+++ + .+..+++|+.|++++|+..+.++ +..+.+++.
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~ 174 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTT 174 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CT-TCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCE
T ss_pred CCcCCEEECCCCcCCe-ec--CC-CCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc---cccCCcCCE
Confidence 7788888888887773 44 33 37788888888887764 3 26677788888888875433332 345667777
Q ss_pred HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeee
Q 048681 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLN 252 (266)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~ 252 (266)
+++..+...... ...++.|+.|++++|.+++ ++ +..+++|+.|++++|++++.+. .|++++|.+.
T Consensus 175 L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 175 LDCSFNKITELD-----VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EECCSSCCCCCC-----CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred EECCCCccceec-----cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCC
Confidence 777766555432 3457888899999988884 33 7888899999999998887422 8999999998
Q ss_pred ecCChhhhhcc
Q 048681 253 GKIPPQLVELN 263 (266)
Q Consensus 253 ~~~p~~~~~~~ 263 (266)
+..+..+.+++
T Consensus 247 ~~~~~~l~~L~ 257 (457)
T 3bz5_A 247 ELDVSTLSKLT 257 (457)
T ss_dssp CCCCTTCTTCC
T ss_pred CcCHHHCCCCC
Confidence 76555555444
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.2e-20 Score=151.56 Aligned_cols=215 Identities=24% Similarity=0.199 Sum_probs=144.6
Q ss_pred EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc-
Q 048681 15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF- 93 (266)
Q Consensus 15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l- 93 (266)
.++-.+..+. .+|..+. ++|++|++++|.+++..+. .+..+ ++|++|++++|.+ ..+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~~~ 68 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSF-PELQVLDLSRCEI-----------------QTIE 68 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTT-TTTTC-TTCSEEECTTCCC-----------------CEEC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHh-Hhccc-cCCcEEECCCCcC-----------------CccC
Confidence 4555666666 4566554 6899999999999976555 77777 9999999999874 122
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec-CCccccc
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE-IPKHLAI 172 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~ 172 (266)
+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+....+..+..+++|+.|++++|++++. +|..+ .
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-~ 146 (276)
T 2z62_A 69 DGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-S 146 (276)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-G
T ss_pred HHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-c
Confidence 23467788999999999999844444444 489999999999999866566788999999999999999842 34444 4
Q ss_pred cccchhHHHhhhcccccccccCCCCcCCCCcc----EEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMY----GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 173 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
.+.+++.+++..+.........+. .++.|+ .|++++|.+++ ++.......+|+.|++++|.+++.++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred cCCCCCEEECCCCCCCcCCHHHhh--hhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhccc
Confidence 566666666665544433221111 122233 66667766663 33323333466777777776665433
Q ss_pred ----eEEeeCCeeeecCC
Q 048681 243 ----SLDVSYNNLNGKIP 256 (266)
Q Consensus 243 ----~l~l~~n~i~~~~p 256 (266)
.|++++|++.+.-|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 56777776665443
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=155.87 Aligned_cols=198 Identities=17% Similarity=0.225 Sum_probs=138.5
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
.+.++++|++|++++|.+.. ++ .+..+++|++|++++|.+++. + .+..+ ++|++|++++|...
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~--~~~~l-~~L~~L~L~~n~l~----------- 98 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-A--PLKNL-TKITELELSGNPLK----------- 98 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G--GGTTC-CSCCEEECCSCCCS-----------
T ss_pred cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-h--hHccC-CCCCEEEccCCcCC-----------
Confidence 44568889999999998884 34 688899999999999988753 3 26666 89999999988731
Q ss_pred ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681 86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
.++ .+..+++|++|++++|.++ .++. +. .+++|+.|++++|.+.. .+. +..+++|+.|++++|++++
T Consensus 99 ------~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 99 ------NVS-AIAGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp ------CCG-GGTTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-
T ss_pred ------Cch-hhcCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-
Confidence 111 3556677888888888876 3443 33 37788888888888763 332 6777888888888887763
Q ss_pred CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC
Q 048681 166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241 (266)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 241 (266)
++. +..+.+++.+++..+....... ...++.|+.|++++|.+++ ++. +..+++|+.|++++|++++.+
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCc-ccc-ccCCCCCCEEEccCCeeecCC
Confidence 333 3455666666666555444333 2346788888888888874 333 677888888888888887643
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=4.5e-20 Score=166.89 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=95.9
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 204 (266)
+.+++.++++.|.+....+..+..+++++.|++++|+..+.+.+..+..+.+++.++++.+......+..+ ..+++|+
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f--~~l~~L~ 521 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQ 521 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCC
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH--cCCCCCC
Confidence 44566666666666655566677778888888888875544444455677888888888876665544333 4488999
Q ss_pred EEEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEeeCCeeee
Q 048681 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVSYNNLNG 253 (266)
Q Consensus 205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~~n~i~~ 253 (266)
+|+|++|.+++..+..|..+++|++|++++|++++.+| .|++++|++.-
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999997777788999999999999999987755 79999998753
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.8e-20 Score=149.91 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=134.1
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccccCCCCcchhhccccccccccc-chhhhhccCCCCcceecc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTRNISSSPLLHLITSIEYLSTLN-YLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~ 88 (266)
++|++|++++|.++...+..|.++++|++|++++|. ++...+. .|..+ ++|++|++++ |..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l-~~L~~L~l~~~n~l--------------- 93 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNL-SKVTHIEIRNTRNL--------------- 93 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESC-TTCCEEEEEEETTC---------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCC-cCCcEEECCCCCCe---------------
Confidence 479999999999998777789999999999999997 7754333 67676 8899999887 553
Q ss_pred cCcccc-cCcccccCccEEEccCccccccCCccccccCCCCc---EEEcccc-cccccCCccccCCCCCC-EEEccCCee
Q 048681 89 SWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM---YLNLSRN-EFDGSIPSSIGDLNSLK-FLDLSHNQL 162 (266)
Q Consensus 89 ~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~~ 162 (266)
..++ ..+..+++|++|++++|.++ .+|. +. .+++|+ .|++++| .+....+..+..+++|+ .|++++|++
T Consensus 94 --~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 94 --TYIDPDALKELPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp --CEECTTSEECCTTCCEEEEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred --eEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 2222 34667788999999998887 4665 33 367777 8999998 88755556688888899 999998888
Q ss_pred eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCc-ccccCCcccccc-ccCCeeeccccccccc
Q 048681 163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKL-TRVRALNLSHNNLTGV 240 (266)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 240 (266)
+ .+|...+. .++|+.|++++|. +++..+..|..+ ++|+.|++++|++++.
T Consensus 169 ~-~i~~~~~~---------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 169 T-SVQGYAFN---------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp C-EECTTTTT---------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred c-ccCHhhcC---------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 7 55544431 2567788888884 774445566777 7788887777777754
Q ss_pred CC
Q 048681 241 IP 242 (266)
Q Consensus 241 ~~ 242 (266)
++
T Consensus 221 ~~ 222 (239)
T 2xwt_C 221 PS 222 (239)
T ss_dssp CC
T ss_pred Ch
Confidence 33
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=7.6e-20 Score=159.55 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++|++|++++|.+.+ +| .|+++++|++|++++|.+++ +|. . +.+|++|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~-~----~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD-L----PPSLEFIAAGNNQ 184 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-C----CTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-C----cccccEEECcCCc
Confidence 456666666666553 34 35666666666666666553 332 1 1355555555554
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.1e-19 Score=146.32 Aligned_cols=181 Identities=20% Similarity=0.221 Sum_probs=134.4
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
...++++++++.+. .+|..+. +++++|++++|.+++..+. .+..+ ++|++|++++|.+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~--------------- 73 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGL-TKLTWLNLDYNQLQT--------------- 73 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTC-TTCCEEECTTSCCCC---------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHh-HhcCc-ccCCEEECCCCcCCc---------------
Confidence 45678888888888 4555554 5888888888888865555 67776 888888888876311
Q ss_pred cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 170 (266)
..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ++...
T Consensus 74 -~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~ 150 (251)
T 3m19_A 74 -LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGA 150 (251)
T ss_dssp -CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred -cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHH
Confidence 11233567788999999999887 5555555558899999999998885555567788899999999998874 44322
Q ss_pred cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 151 ~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 F--------------------------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp T--------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred c--------------------------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 2 1267888999999988865556788888899999999988866
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.9e-20 Score=151.09 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=141.1
Q ss_pred CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681 2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 81 (266)
..++++..+++|++|++++|.+....+ +..+++|++|++++|.+++ ++ .+..+ ++|++|++++|..
T Consensus 54 ~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l-~~L~~L~l~~n~l-------- 119 (308)
T 1h6u_A 54 TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGL-QSIKTLDLTSTQI-------- 119 (308)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTC-TTCCEEECTTSCC--------
T ss_pred cCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCC-CCCCEEECCCCCC--------
Confidence 456788999999999999999996544 9999999999999999985 32 57777 9999999999874
Q ss_pred CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
..++. +..+++|++|++++|.++ .++. +. .+++|+.|++++|.+.. ++. +..+++|+.|++++|+
T Consensus 120 ---------~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 120 ---------TDVTP-LAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp ---------CCCGG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred ---------CCchh-hcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 11222 567788999999999887 4443 33 37889999999998873 333 7788899999999998
Q ss_pred eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcc
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ 220 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 220 (266)
+++ ++. +..+.+++.+++..+....... ...+++|+.|++++|.++ ..|..
T Consensus 185 l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~-~~~~~ 235 (308)
T 1h6u_A 185 ISD-ISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTIT-NQPVF 235 (308)
T ss_dssp CCC-CGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEE-CCCEE
T ss_pred cCc-Chh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeee-cCCee
Confidence 874 433 4667788888888777666553 345899999999999998 44543
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=157.86 Aligned_cols=183 Identities=21% Similarity=0.199 Sum_probs=109.7
Q ss_pred CCCcEEECCCccCccCCChhh--hcCCCCcEEeccCCcccccCCC---CcchhhcccccccccccchhhhhccCCCCcce
Q 048681 11 RNLQELHMGANDLRGTLPWCL--ENITSLKVLDLYLNQLTRNISS---SPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+. ..+..+ ++|++|++++|.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l------------ 157 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK-PGLKVLSIAQAHS------------ 157 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC-SCCCEEEEECCSS------------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc-cCCCEEEeeCCCc------------
Confidence 446666666666666666655 5666666666666666543331 022223 5666666666553
Q ss_pred ecccCcc-cccCcccccCccEEEccCcccccc--CC-ccccccCCCCcEEEcccccccccCCc----cccCCCCCCEEEc
Q 048681 86 ITMSWRP-FRMPIQSHWHLATLYVSKKFFQGN--IP-LEIGVYFPRLMYLNLSRNEFDGSIPS----SIGDLNSLKFLDL 157 (266)
Q Consensus 86 ~~~~~~~-l~~~~~~~~~L~~L~l~~n~~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 157 (266)
.. .+..+..+++|++|++++|++.+. ++ ......+++|++|++++|.++ .++. .+..+++|++|++
T Consensus 158 -----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 158 -----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp -----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEEC
T ss_pred -----chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEEC
Confidence 22 235567788999999999987532 22 222234788999999999886 3333 2467789999999
Q ss_pred cCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccc
Q 048681 158 SHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237 (266)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 237 (266)
++|++++..|+.+.. +. .++.|+.|++++|.++ .+|..+. ++|++|++++|++
T Consensus 232 s~N~l~~~~p~~~~~-~~-----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 232 SHNSLRATVNPSAPR-CM-----------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp TTSCCCCCCCSCCSS-CC-----------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred CCCCCCccchhhHHh-cc-----------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 999998655655531 10 0245555555555555 4444332 4555555555555
Q ss_pred cc
Q 048681 238 TG 239 (266)
Q Consensus 238 ~~ 239 (266)
++
T Consensus 285 ~~ 286 (310)
T 4glp_A 285 NR 286 (310)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=2e-20 Score=155.85 Aligned_cols=194 Identities=24% Similarity=0.173 Sum_probs=120.2
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh-ccCCCCc
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS-MLHFPNS 83 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~~ 83 (266)
+.|.++++|++|++++|.+.+..+ |..+++|++|++++|.+++ +... ++|++|++++|.+... ...++.+
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~-~~L~~L~l~~n~l~~~~~~~~~~L 122 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVG-PSIETLHAANNNISRVSCSRGQGK 122 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEEC-TTCCEEECCSSCCSEEEECCCSSC
T ss_pred HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCC-CCcCEEECCCCccCCcCccccCCC
Confidence 468899999999999999986654 8999999999999999984 3333 8999999999883221 2223333
Q ss_pred ceecccCcc---c-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681 84 FTITMSWRP---F-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 84 ~~~~~~~~~---l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 159 (266)
.....+.+. + +..+..+++|++|++++|.+++..+..+...+++|++|++++|.+... +. ...+++|+.|++++
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS 200 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCC
Confidence 333322222 2 234555666777777776666444444443356677777777766532 22 22466677777777
Q ss_pred CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
|++++ +++.+ .. ++.|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 201 N~l~~-l~~~~-~~--------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 201 NKLAF-MGPEF-QS--------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCE-ECGGG-GG--------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCc-chhhh-cc--------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 76663 33332 23 455555555555555 34544555555555555555555
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=5.8e-21 Score=166.63 Aligned_cols=50 Identities=34% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------eEEeeCCeeee
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------SLDVSYNNLNG 253 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~l~l~~n~i~~ 253 (266)
++.|++|++++|.++ .+|.. .++|+.|++++|.+++.++ .|++++|.+.+
T Consensus 236 l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 236 LPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred CCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence 444455555544444 23321 2344455555554443211 45555555554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4.5e-20 Score=162.38 Aligned_cols=195 Identities=23% Similarity=0.156 Sum_probs=127.4
Q ss_pred CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh-ccCCCC
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS-MLHFPN 82 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~ 82 (266)
+..|..+++|++|++++|.+.+..| |..+++|++|++++|.+++. ... ++|+.|++++|.+... ...++.
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~-~~L~~L~L~~N~l~~~~~~~l~~ 121 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVG-PSIETLHAANNNISRVSCSRGQG 121 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EEC-TTCCEEECCSSCCCCEEECCCSS
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCC-CCcCEEECcCCcCCCCCccccCC
Confidence 4578899999999999999987665 89999999999999999843 233 8999999999983221 122333
Q ss_pred cceecccCcc----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 048681 83 SFTITMSWRP----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLS 158 (266)
Q Consensus 83 ~~~~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 158 (266)
+...+.+.+. .|..+..+++|++|++++|.+++..|..+...+++|+.|++++|.+++. +. ...+++|+.|+++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls 199 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence 3333222222 1334555666666666666666544544443356666666666666532 21 2245666666666
Q ss_pred CCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
+|++++ +|+.+ ..++.|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 200 ~N~l~~-~~~~~---------------------------~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 200 SNKLAF-MGPEF---------------------------QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SSCCCE-ECGGG---------------------------GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCC-CCHhH---------------------------cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 666653 32222 23577788888888877 46766777778888888888776
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.9e-21 Score=163.13 Aligned_cols=227 Identities=16% Similarity=0.175 Sum_probs=132.9
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCccccc-CCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRN-ISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+ ++|++|++++|.....
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~-~~L~~L~L~~~~l~~~------------- 133 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQC-SKLQNLSLEGLRLSDP------------- 133 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTB-CCCSEEECTTCBCCHH-------------
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhC-CCCCEEeCcCcccCHH-------------
Confidence 6777777777777755544 45677777777777777643 333 34444 7777777777752111
Q ss_pred CcccccCcccccCccEEEccCc-ccccc-CCccccccCCCCcEEEcccc-ccccc-CCccccCCC-CCCEEEccCCe--e
Q 048681 90 WRPFRMPIQSHWHLATLYVSKK-FFQGN-IPLEIGVYFPRLMYLNLSRN-EFDGS-IPSSIGDLN-SLKFLDLSHNQ--L 162 (266)
Q Consensus 90 ~~~l~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~n~--~ 162 (266)
.+..+..+++|++|++++| .+++. ++..+.. +++|++|++++| .++.. ++..+..++ +|+.|++++|. +
T Consensus 134 ---~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 134 ---IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ---HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ---HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 1222334555666666665 34431 2222222 556666666666 55422 334445555 66666666652 2
Q ss_pred ee-cCCccccccccchhHHHhhhccc-ccccccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeecccccccc
Q 048681 163 TG-EIPKHLAIGCFNLEYLVESLMFT-TKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNNLTG 239 (266)
Q Consensus 163 ~~-~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~ 239 (266)
++ .++. .+..+++++.+++..+.. .+.... ....+++|+.|++++|. +.......+..+++|+.|++++| ++.
T Consensus 210 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 210 QKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQ--EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp CHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGG--GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred CHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHH--HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 21 1221 223455555555555441 111111 11236899999999994 44333335788999999999998 553
Q ss_pred --------cCCeEEeeCCeeeecCChhhhh
Q 048681 240 --------VIPSLDVSYNNLNGKIPPQLVE 261 (266)
Q Consensus 240 --------~~~~l~l~~n~i~~~~p~~~~~ 261 (266)
..|.|++++|.+++..|..+++
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 2668999999999988887764
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=5.1e-19 Score=159.35 Aligned_cols=217 Identities=23% Similarity=0.195 Sum_probs=116.4
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec---
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT--- 87 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~--- 87 (266)
++|++|++++|.++. +|. .+++|++|++++|.++ .+|. . +++|++|++++|.+..-...++++..+.
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~-l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----L-PPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----C-CTTCCEEEECSCCCCCCCCCCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----C-CCCCCEEECcCCcCCCCCCCCCCcCEEECCC
Confidence 567777777777763 333 4567777777777766 3443 2 2677777777766221111222222222
Q ss_pred ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 167 (266)
+.+..+|.. +++|++|++++|.++ .+|.. ..+|+.|++++|.++ .+| ..+++|+.|++++|+++ .+|
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~-~l~ 197 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLP 197 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCC
T ss_pred CCCCcCCCC---CCCCCEEECcCCcCC-CcCCc----cCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCC-CCC
Confidence 222333332 366777777777666 34431 345666666666665 333 34466777777777776 343
Q ss_pred ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----
Q 048681 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----- 242 (266)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----- 242 (266)
.. ..+++.+++..+....+.. .+++|+.|++++|.++ .+| ..+++|+.|++++|++++.++
T Consensus 198 ~~----~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L 263 (622)
T 3g06_A 198 TL----PSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGL 263 (622)
T ss_dssp CC----CTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred Cc----cchhhEEECcCCcccccCC------CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccC
Confidence 32 2344444444443332221 1355666666666665 344 334556666666666654322
Q ss_pred -eEEeeCCeeeecCChhhhhcccC
Q 048681 243 -SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 243 -~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|++++|.|+ .+|.++.++++|
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTT
T ss_pred cEEeCCCCCCC-cCCHHHhhcccc
Confidence 5666666665 556666655554
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-19 Score=141.84 Aligned_cols=177 Identities=22% Similarity=0.256 Sum_probs=102.3
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.++.+++.+. .+|..+ .++|++|++++|.+++ ++...+..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~----------------------------------- 50 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKS-LPNGVFDE----------------------------------- 50 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCC-CCTTTTTT-----------------------------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCc-CChhhhcc-----------------------------------
Confidence 45667777666 334333 3577788888887764 33213333
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccccc
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 173 (266)
+++|++|++++|+++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ++...+
T Consensus 51 ------l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-- 120 (208)
T 2o6s_A 51 ------LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVF-- 120 (208)
T ss_dssp ------CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT--
T ss_pred ------cccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHh--
Confidence 345556666666665 4444433335666666666666654334445666666666666666653 322211
Q ss_pred ccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC---eEEeeCCe
Q 048681 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---SLDVSYNN 250 (266)
Q Consensus 174 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~l~l~~n~ 250 (266)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..| +|++++|.
T Consensus 121 ------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 121 ------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 176 (208)
T ss_dssp ------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred ------------------------ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence 124566666666666664333445666666667776666666555 56666666
Q ss_pred eeecCChhhhhcc
Q 048681 251 LNGKIPPQLVELN 263 (266)
Q Consensus 251 i~~~~p~~~~~~~ 263 (266)
++|.+|++++++.
T Consensus 177 ~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 177 HSGVVRNSAGSVA 189 (208)
T ss_dssp CTTTBBCTTSSBC
T ss_pred CCceeeccCcccc
Confidence 7677776666554
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4.6e-19 Score=142.78 Aligned_cols=171 Identities=21% Similarity=0.190 Sum_probs=135.5
Q ss_pred CCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcccc
Q 048681 35 TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114 (266)
Q Consensus 35 ~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~ 114 (266)
.+.++++++++.++ .+|. .+ ++.++.|++++|.+... .+..+..+++|++|++++|.++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~-~~---~~~l~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPS-GI---PADTEKLDLQSTGLATL----------------SDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCS-SCCS-CC---CTTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCcc-ccCC-CC---CCCCCEEEccCCCcCcc----------------CHhHhcCcccCCEEECCCCcCC
Confidence 46789999999998 5776 43 36889999998874111 1234677889999999999998
Q ss_pred ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS 194 (266)
Q Consensus 115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 194 (266)
+ +++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...+
T Consensus 73 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~----------------------- 127 (251)
T 3m19_A 73 T-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF----------------------- 127 (251)
T ss_dssp C-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-----------------------
T ss_pred c-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHh-----------------------
Confidence 4 44444444889999999999998666677889999999999999998 4444332
Q ss_pred CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeec
Q 048681 195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGK 254 (266)
Q Consensus 195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~ 254 (266)
..++.|+.|++++|.+++..+..|..+++|++|++++|.+++.++ .|++++|.+.+.
T Consensus 128 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 ---DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 136899999999999996555578999999999999999997755 899999999865
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.7e-19 Score=160.29 Aligned_cols=221 Identities=21% Similarity=0.205 Sum_probs=134.1
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~ 88 (266)
.+++|++|++++|.++. +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+..-...++++..++.
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~-----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~L 148 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC-----CCCCcCEEECCCCCCCcCCCCCCCCCEEEC
Confidence 57889999999999884 444 67889999999998874 443 237788888888873222222344433333
Q ss_pred cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681 89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK 168 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 168 (266)
+.+.+..--....+|+.|++++|.++ .+| ..+++|+.|++++|.+. .+|.. .++|+.|++++|.++ .+|.
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~-~l~~ 218 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA 218 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc-ccCC
Confidence 33332221123356777777777776 455 22567777777777776 33432 356777777777666 3443
Q ss_pred cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242 (266)
Q Consensus 169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------ 242 (266)
. +.+++.++++.+....++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++..++
T Consensus 219 ~----~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~ 284 (622)
T 3g06_A 219 L----PSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLS 284 (622)
T ss_dssp C----CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSC
T ss_pred C----CCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhcc
Confidence 2 245555555555433322 23466777777777766 4554 45667777777777663322
Q ss_pred ---eEEeeCCeeeecCChhhhhcc
Q 048681 243 ---SLDVSYNNLNGKIPPQLVELN 263 (266)
Q Consensus 243 ---~l~l~~n~i~~~~p~~~~~~~ 263 (266)
.|++++|.+.+..|..+.++.
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhcc
Confidence 577777777766666665443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.1e-19 Score=144.05 Aligned_cols=183 Identities=21% Similarity=0.215 Sum_probs=139.4
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
+++++|++++|.+....+..|.++++|++|++++|.++. ++...+..+ ++|++|++++|..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l-~~L~~L~l~~n~l----------------- 97 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKEL-KNLETLWVTDNKL----------------- 97 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSC-TTCCEEECCSSCC-----------------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCC-CCCCEEECCCCcC-----------------
Confidence 579999999999998888899999999999999999984 555245566 9999999999874
Q ss_pred cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
..++ ..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 175 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred CcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChh
Confidence 1222 23566788888999888887 455444444888999999988887555556778888999999888887 45555
Q ss_pred ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc
Q 048681 170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE 216 (266)
Q Consensus 170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 216 (266)
.+..+.+++.+++..+......... ...++.|+.|++++|.+...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCS
T ss_pred HhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCCeeCC
Confidence 5567788888888777555443322 23478999999999998643
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=5.5e-19 Score=145.33 Aligned_cols=178 Identities=23% Similarity=0.103 Sum_probs=142.6
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
++++.|++++|.+.+..+..|.++++|++|++++|.+++. +. ...+ ++|++|++++|..
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~--~~~l-~~L~~L~Ls~N~l----------------- 89 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV--DGTL-PVLGTLDLSHNQL----------------- 89 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC--CSCC-TTCCEEECCSSCC-----------------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC--CCCC-CcCCEEECCCCcC-----------------
Confidence 6899999999999988889999999999999999999853 33 2445 8999999999874
Q ss_pred cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681 91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170 (266)
Q Consensus 91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 170 (266)
..+|..+..+++|++|++++|+++ .+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|...
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 167 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTT
T ss_pred CcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHH
Confidence 345556677888999999999988 556554455889999999999988655666778899999999999988 677777
Q ss_pred cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681 171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV 214 (266)
Q Consensus 171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 214 (266)
+..+.+++.+++..+....+. ........|+.+++++|.+.
T Consensus 168 ~~~l~~L~~L~L~~N~l~~ip---~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 168 LNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCC---TTTTTTCCCSEEECCSCCBC
T ss_pred hcCcCCCCEEECCCCcCCccC---hhhcccccCCeEEeCCCCcc
Confidence 777888888888777655433 33334578999999999876
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=3.8e-21 Score=164.48 Aligned_cols=239 Identities=15% Similarity=0.155 Sum_probs=145.8
Q ss_pred CccccCCCCCcEEECCCccCccCCChh----hhcCCCCcEEeccCCcc---cccCCCCcc-------hhhcccccccccc
Q 048681 4 ISGLFRLRNLQELHMGANDLRGTLPWC----LENITSLKVLDLYLNQL---TRNISSSPL-------LHLITSIEYLSTL 69 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~i---~~~~~~~~~-------~~~~~~L~~L~~~ 69 (266)
+..+.++++|++|++++|.+....+.. |..+++|++|++++|.+ ++.+|. ++ ..+ ++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~-~~~~l~~~l~~~-~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-ALRLLLQALLKC-PKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-HHHHHHHHHTTC-TTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH-HHHHHHHHHhhC-CcccEEECC
Confidence 345667888999999999888664444 55789999999998643 334444 33 344 888889988
Q ss_pred cchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccccc---C---------CCCcEEEccccc
Q 048681 70 NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---F---------PRLMYLNLSRNE 137 (266)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~---------~~L~~L~l~~~~ 137 (266)
+|..... ....++..+..+++|++|++++|.+++..+..+... + ++|++|++++|.
T Consensus 103 ~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 103 DNAFGPT------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp SCCCCTT------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCcCCHH------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 8873210 001234445566677777777777653322222221 2 677777777777
Q ss_pred cc-ccCC---ccccCCCCCCEEEccCCeeeec----CCccccccccchhHHHhhhcccccc--cccCCCCcCCCCccEEE
Q 048681 138 FD-GSIP---SSIGDLNSLKFLDLSHNQLTGE----IPKHLAIGCFNLEYLVESLMFTTKE--TSYSYKGKPLNKMYGID 207 (266)
Q Consensus 138 ~~-~~~~---~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~L~~L~ 207 (266)
+. ..++ ..+..+++|+.|++++|+++.. +.+..+..+.+++.|+++.+..... ...+.....+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 2222 3455666777777777766521 1111223455555555555443211 11112223467888999
Q ss_pred ccCCccccc----CCccccc--cccCCeeecccccccc----cC--------C---eEEeeCCeeeecCC
Q 048681 208 LSCNKLVGE----IPPQIGK--LTRVRALNLSHNNLTG----VI--------P---SLDVSYNNLNGKIP 256 (266)
Q Consensus 208 L~~n~i~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~--------~---~l~l~~n~i~~~~p 256 (266)
|++|.+++. ++..+.. +++|++|++++|.+++ .+ + .|++++|.+.+..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999888754 4555533 7889999999988886 11 2 88889998886553
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=3.2e-19 Score=142.58 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=140.3
Q ss_pred cccCCCCCcEEECCCcc-CccCCChhhhcCCCCcEEeccC-CcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 6 GLFRLRNLQELHMGAND-LRGTLPWCLENITSLKVLDLYL-NQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
.|.++++|++|++++|. ++.+.+.+|.++++|++|++++ |.++...+. .|..+ ++|++|++++|..
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l-~~L~~L~l~~n~l---------- 117 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKEL-PLLKFLGIFNTGL---------- 117 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECC-TTCCEEEEEEECC----------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCC-CCCCEEeCCCCCC----------
Confidence 58899999999999997 8877788999999999999998 999854444 67777 9999999999874
Q ss_pred ceecccCcccccCcccccCcc---EEEccCc-cccccCCccccccCCCCc-EEEcccccccccCCccccCCCCCCEEEcc
Q 048681 84 FTITMSWRPFRMPIQSHWHLA---TLYVSKK-FFQGNIPLEIGVYFPRLM-YLNLSRNEFDGSIPSSIGDLNSLKFLDLS 158 (266)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 158 (266)
..+|. +..+++|+ +|++++| .++ .+++..+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus 118 -------~~lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 118 -------KMFPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp -------CSCCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred -------ccccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 22333 45566666 9999999 887 56665555588999 9999999998 555443344899999999
Q ss_pred CCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681 159 HNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236 (266)
Q Consensus 159 ~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 236 (266)
+|+ ++ .++...+. .+ +.|+.|++++|.++ .+|.. .+++|+.|++.++.
T Consensus 188 ~n~~l~-~i~~~~~~--------------------------~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFG--------------------------GVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCC-EECTTTTT--------------------------TCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcc-cCCHHHhh--------------------------ccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 995 87 44433321 25 78999999999998 56653 67889999988763
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3e-20 Score=157.62 Aligned_cols=236 Identities=16% Similarity=0.132 Sum_probs=137.3
Q ss_pred CCCCCcEEECCCccCccCCC----hhhhcCC-CCcEEeccCCcccccCCCCcchhh----cccccccccccchhhhhccC
Q 048681 9 RLRNLQELHMGANDLRGTLP----WCLENIT-SLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYLVLVSMLH 79 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~~~~~~~~ 79 (266)
..++|++|++++|.+....+ +.|..++ +|++|++++|.+++..+. .+... +++|++|++++|.......
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~- 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSS- 97 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCH-
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHH-
Confidence 34459999999999997776 7778888 899999999999875554 55553 3789999999998421110
Q ss_pred CCCcceecccCcccccCcccc-cCccEEEccCccccccCCcccccc----CCCCcEEEccccccccc----CCccccCCC
Q 048681 80 FPNSFTITMSWRPFRMPIQSH-WHLATLYVSKKFFQGNIPLEIGVY----FPRLMYLNLSRNEFDGS----IPSSIGDLN 150 (266)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~ 150 (266)
..+...+... ++|++|++++|.+++..+..+... .++|++|++++|.+... ++..+...+
T Consensus 98 -----------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 98 -----------DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp -----------HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred -----------HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 0000112222 456666666666653322222211 13666666666666532 222333343
Q ss_pred -CCCEEEccCCeeeecCCcccc---ccc-cchhHHHhhhccccccccc--CCCCcC-CCCccEEEccCCcccccCC----
Q 048681 151 -SLKFLDLSHNQLTGEIPKHLA---IGC-FNLEYLVESLMFTTKETSY--SYKGKP-LNKMYGIDLSCNKLVGEIP---- 218 (266)
Q Consensus 151 -~L~~L~l~~n~~~~~~~~~~~---~~~-~~l~~l~~~~~~~~~~~~~--~~~~~~-~~~L~~L~L~~n~i~~~~~---- 218 (266)
+|+.|++++|++++..+..+. ..+ .+++.++++.+........ ...... .++|+.|++++|.+++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 666666666666533332221 122 3555555555544432211 111111 3578888888888875433
Q ss_pred ccccccccCCeeeccccccccc-----------------CCeEEeeCCeeeecCCh
Q 048681 219 PQIGKLTRVRALNLSHNNLTGV-----------------IPSLDVSYNNLNGKIPP 257 (266)
Q Consensus 219 ~~~~~l~~L~~L~l~~n~l~~~-----------------~~~l~l~~n~i~~~~p~ 257 (266)
..+..+++|+.|++++|.+.+. +.+||+++|.+.+..|.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2346677888888888874322 11688888887755333
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=9.6e-20 Score=151.28 Aligned_cols=215 Identities=21% Similarity=0.177 Sum_probs=147.2
Q ss_pred CCCCCcEEECCCccCccCCCh---hhhcCCCCcEEeccCCcccccCCCCcc--hhhcccccccccccchhhhhccCCCCc
Q 048681 9 RLRNLQELHMGANDLRGTLPW---CLENITSLKVLDLYLNQLTRNISSSPL--LHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
....++.+.+.++.+....-. .+..+++|++|++++|.+++..|. .+ ..+ ++|++|++++|.+......
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~-~~L~~L~Ls~n~i~~~~~~---- 135 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATG-LALSSLRLRNVSWATGRSW---- 135 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCC-BCCSSCEEESCCCSSTTSS----
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccC-CCCCEEEeecccccchhhh----
Confidence 344567778877776522111 122457799999999999887777 55 555 8999999998874221100
Q ss_pred ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc--C--CccccCCCCCCEEEcc
Q 048681 84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS--I--PSSIGDLNSLKFLDLS 158 (266)
Q Consensus 84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~ 158 (266)
++ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+. + +..+..+++|+.|+++
T Consensus 136 ---------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 136 ---------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp ---------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ---------hHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 00 1234577899999999999744434444 488999999999986531 2 2334678899999999
Q ss_pred CCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccc---ccCCeeecccc
Q 048681 159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL---TRVRALNLSHN 235 (266)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n 235 (266)
+|+++ .++.... .+ ...++.|++|++++|.+++..|..+..+ ++|++|++++|
T Consensus 206 ~N~l~-~l~~~~~----~l-------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 206 NTGME-TPTGVCA----AL-------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp SSCCC-CHHHHHH----HH-------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred CCCCC-chHHHHH----HH-------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 99886 2322110 00 0126899999999999997778777766 69999999999
Q ss_pred cccccCC-------eEEeeCCeeeecCChhhhhcccC
Q 048681 236 NLTGVIP-------SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 236 ~l~~~~~-------~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
++++.++ .|++++|.+++ +|. +..+++|
T Consensus 262 ~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~-~~~l~~L 296 (310)
T 4glp_A 262 GLEQVPKGLPAKLRVLDLSSNRLNR-APQ-PDELPEV 296 (310)
T ss_dssp CCCSCCSCCCSCCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred CCCchhhhhcCCCCEEECCCCcCCC-Cch-hhhCCCc
Confidence 9995543 89999999995 343 4555444
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=142.47 Aligned_cols=176 Identities=20% Similarity=0.275 Sum_probs=135.0
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF 84 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 84 (266)
..+..+++|++|++++|.+... + .+..+++|++|++++|.+++.. .+..+ ++|++|++++|...
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~---~l~~l-~~L~~L~l~~n~l~---------- 103 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK---PLANL-KNLGWLFLDENKVK---------- 103 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG---GGTTC-TTCCEEECCSSCCC----------
T ss_pred cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc---ccccC-CCCCEEECCCCcCC----------
Confidence 3456788999999999999854 3 4889999999999999998532 26666 89999999988731
Q ss_pred eecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 85 TITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
.++ .+..+++|++|++++|+++ .++ .+.. +++|+.|++++|.+... ..+..+++|+.|++++|++++
T Consensus 104 -------~~~-~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 104 -------DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp -------CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred -------CCh-hhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 112 2567788999999999987 343 4444 88999999999998743 677889999999999999874
Q ss_pred cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
++. + ..++.|+.|++++|.++ .++. +..+++|+.|++++|+++..
T Consensus 171 -~~~-l---------------------------~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 -IVP-L---------------------------AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -CGG-G---------------------------TTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred -chh-h---------------------------cCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccCC
Confidence 332 2 12678888888888887 3443 77888888888888887754
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.2e-18 Score=155.29 Aligned_cols=185 Identities=25% Similarity=0.294 Sum_probs=126.8
Q ss_pred CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681 12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR 91 (266)
Q Consensus 12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (266)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+|. .+++|++|++++|.+ .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip~-----~l~~L~~L~Ls~N~l-----------------~ 113 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPE-----LPASLEYLDACDNRL-----------------S 113 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCCC-----CCTTCCEEECCSSCC-----------------S
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-cccc-----ccCCCCEEEccCCCC-----------------C
Confidence 89999999999986 56555 378999999999998 5652 248999999999874 1
Q ss_pred ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681 92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 171 (266)
.+|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 114 ~ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~ 179 (571)
T 3cvr_A 114 TLPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP 179 (571)
T ss_dssp CCCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC
T ss_pred Ccch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh
Confidence 2233 222 67777777777763 555 26677777777777763 454 45677777777777763 555 32
Q ss_pred ccccchhHHHhhhcccccccccCCCC---cCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 172 IGCFNLEYLVESLMFTTKETSYSYKG---KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 172 ~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.+++.|+++.+....++. +.. ...+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus 180 ---~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 ---ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ---CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 556666666555443333 110 01122388899999888 688877778888888888888886644
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.5e-20 Score=162.74 Aligned_cols=60 Identities=23% Similarity=0.148 Sum_probs=33.0
Q ss_pred CCcEEECCCccCcc----CCChhhhcCCCCcEEeccCCcccccCCCCcchhh----cccccccccccch
Q 048681 12 NLQELHMGANDLRG----TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYL 72 (266)
Q Consensus 12 ~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~ 72 (266)
+|++|++++|.+.. .++..|..+++|++|++++|.+++..+. .+... ..+|++|++++|.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSC
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHhcCCCcceEEECCCCC
Confidence 56777777776663 2355666666777777776666543222 22221 1245666665554
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.4e-18 Score=145.25 Aligned_cols=206 Identities=18% Similarity=0.152 Sum_probs=113.9
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhccccccccc-ccchhhhhccCCCCcceeccc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST-LNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~-~~~~~~~~~~~~~~~~~~~~~ 89 (266)
+++++|++++|.|+.+.+.+|+++++|++|++++|.+.+.++...|..+ ++++++.. ..|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~N~----------------- 91 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANN----------------- 91 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEETT-----------------
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-hhhhhhhcccCCc-----------------
Confidence 3566666666666655455566666666666666665544544234444 44443222 2222
Q ss_pred Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEccc-ccccccCCccccCC-CCCCEEEccCCeeeecC
Q 048681 90 WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR-NEFDGSIPSSIGDL-NSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 90 ~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~ 166 (266)
+..+ +..+..+++|++|++++|.+. .+++..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 2333 345677788888888888887 44444333345677777755 44543334455554 35778888888887 45
Q ss_pred CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC-CcccccCC-ccccccccCCeeecccccccccCC--
Q 048681 167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC-NKLVGEIP-PQIGKLTRVRALNLSHNNLTGVIP-- 242 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-- 242 (266)
+...+. ..+|+.+++.+ |.++ .+| ..|..+++|++|++++|+++..++
T Consensus 170 ~~~~f~---------------------------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 170 HNSAFN---------------------------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp CTTSST---------------------------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred Chhhcc---------------------------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 544431 34556666653 4444 344 345666666666666666665433
Q ss_pred -----eEEeeCCeeeecCChhhhhcccC
Q 048681 243 -----SLDVSYNNLNGKIPPQLVELNAL 265 (266)
Q Consensus 243 -----~l~l~~n~i~~~~p~~~~~~~~l 265 (266)
.|.+.++.-.+.+|. +.++++|
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred hccchHhhhccCCCcCcCCC-chhCcCh
Confidence 455444443335553 4444444
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=135.14 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=80.6
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
.++|++|++++|.+....+..|..+++|++|++++|.+++ ++...+..+ ++|++|++++|..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-~~L~~L~Ls~n~l---------------- 88 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKL-TSLTYLNLSTNQL---------------- 88 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTC-TTCCEEECCSSCC----------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCC-CCcCEEECCCCcC----------------
Confidence 4689999999999998887888999999999999999984 444244455 6666666655542
Q ss_pred Ccccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681 90 WRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 90 ~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 162 (266)
..++ ..+..+++|++|++++|.++ .+++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 89 -~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 -QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred -CccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 1111 11344455555555555554 33333222345555555555555433333344555555555555544
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3e-18 Score=154.02 Aligned_cols=176 Identities=20% Similarity=0.280 Sum_probs=133.0
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF 84 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 84 (266)
..+..+++|+.|++++|.+... + .|..+++|+.|+|++|.+++.. .+..+ ++|+.|++++|.+.
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~---~l~~l-~~L~~L~Ls~N~l~---------- 100 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK---PLTNL-KNLGWLFLDENKIK---------- 100 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG---GGGGC-TTCCEEECCSSCCC----------
T ss_pred cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh---hhccC-CCCCEEECcCCCCC----------
Confidence 3456788999999999998843 3 5889999999999999988533 36666 89999999988741
Q ss_pred eecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 85 TITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
.++ .+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.+... ..+..+++|+.|++++|++.+
T Consensus 101 -------~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 101 -------DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp -------CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred -------CCh-hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 112 4567888999999999987 343 3444 88999999999998743 677889999999999999874
Q ss_pred cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
..| + . .++.|+.|+|++|.+++ ++ .+..+++|+.|++++|++++.
T Consensus 168 ~~~--l-~--------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--L-A--------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--G-T--------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred chh--h-c--------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 333 2 1 26777888888887774 43 467778888888888877754
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.3e-18 Score=132.76 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=105.0
Q ss_pred hcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681 32 ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111 (266)
Q Consensus 32 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n 111 (266)
+.+++|++|++++|.++ .++ ++..+ ++|++|++++|.+ . . ...+..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l-~~L~~L~l~~n~~-~----------------~-~~~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYA-HNIKDLTINNIHA-T----------------N-YNPISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGC-TTCSEEEEESCCC-S----------------C-CGGGTTCTTCCEEEEECT
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcC-CCCCEEEccCCCC-C----------------c-chhhhcCCCCCEEEeECC
Confidence 44555555555555554 222 24444 5555555555421 0 0 112455678899999999
Q ss_pred cccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccc
Q 048681 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKE 190 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 190 (266)
.+++..+..+.. +++|+.|++++|.+....+..+..+++|+.|++++|+ ++ .++ .+.
T Consensus 99 ~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~------------------- 156 (197)
T 4ezg_A 99 DVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK------------------- 156 (197)
T ss_dssp TCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-------------------
T ss_pred ccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-------------------
Confidence 988656666655 8899999999999986677888899999999999997 65 443 221
Q ss_pred cccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccc
Q 048681 191 TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239 (266)
Q Consensus 191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 239 (266)
.+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 157 --------~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 --------TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --------GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred --------CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 26889999999999984 55 57889999999999998864
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.5e-20 Score=162.73 Aligned_cols=241 Identities=19% Similarity=0.108 Sum_probs=147.4
Q ss_pred ccCCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcc----cccccccccchhhhhcc
Q 048681 7 LFRLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT----SIEYLSTLNYLVLVSML 78 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~----~L~~L~~~~~~~~~~~~ 78 (266)
+..+++|++|++++|.+... ++..+..+++|++|++++|.+++..+. .+...+. +|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~--- 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-CVLQGLQTPSCKIQKLSLQNCCLTG--- 99 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH-HHHHTTCSTTCCCCEEECTTSCCBG---
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH-HHHHHHhhCCCceeEEEccCCCCCH---
Confidence 44566666666666666532 344555566666666666666543332 2333223 46666666665211
Q ss_pred CCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc----ccCCCCcEEEccccccccc----CCccccCCC
Q 048681 79 HFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG----VYFPRLMYLNLSRNEFDGS----IPSSIGDLN 150 (266)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~l~ 150 (266)
..+..++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.++.. ++..+..++
T Consensus 100 ---------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 100 ---------AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp ---------GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence 01123455567788899999999988744333322 2245799999999988743 355566778
Q ss_pred CCCEEEccCCeeeecCCccccc----cccchhHHHhhhcccccccc--cCCCCcCCCCccEEEccCCcccccC-----Cc
Q 048681 151 SLKFLDLSHNQLTGEIPKHLAI----GCFNLEYLVESLMFTTKETS--YSYKGKPLNKMYGIDLSCNKLVGEI-----PP 219 (266)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~-----~~ 219 (266)
+|+.|++++|++++..+..+.. ...+++.+++..+....... .......++.|+.|++++|.+++.. +.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 9999999999887543333332 23366777766664443221 1122224678889999988877432 22
Q ss_pred cccccccCCeeeccccccccc--------------CCeEEeeCCeeeecCChhhh
Q 048681 220 QIGKLTRVRALNLSHNNLTGV--------------IPSLDVSYNNLNGKIPPQLV 260 (266)
Q Consensus 220 ~~~~l~~L~~L~l~~n~l~~~--------------~~~l~l~~n~i~~~~p~~~~ 260 (266)
.+..+++|++|++++|.+++. +..|++++|.+.+..+..+.
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 223578899999998888752 33889999988765555444
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=7e-19 Score=149.17 Aligned_cols=224 Identities=17% Similarity=0.126 Sum_probs=148.2
Q ss_pred EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCC----CCcchhhcc-cccccccccchhhhhccCCCCcceeccc
Q 048681 15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNIS----SSPLLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
++.++.|.+++.+|..+....+|++|++++|.+++..+ . .+..+ + +|++|++++|.+.....
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~-~~~L~~L~Ls~N~l~~~~~----------- 68 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQ-AFANT-PASVTSLNLSGNSLGFKNS----------- 68 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTC-CTTCCEEECCSSCGGGSCH-----------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHH-HHHhC-CCceeEEECcCCCCCHHHH-----------
Confidence 47889999998877766667779999999999986544 3 45555 5 89999999997422100
Q ss_pred CcccccCcccc-cCccEEEccCccccccCCcccccc---C-CCCcEEEcccccccccCCcc----ccC-CCCCCEEEccC
Q 048681 90 WRPFRMPIQSH-WHLATLYVSKKFFQGNIPLEIGVY---F-PRLMYLNLSRNEFDGSIPSS----IGD-LNSLKFLDLSH 159 (266)
Q Consensus 90 ~~~l~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~ 159 (266)
..+...+... ++|++|++++|.+++..+..+... . ++|++|++++|.++...+.. +.. .++|+.|++++
T Consensus 69 -~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 69 -DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp -HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred -HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 0011111222 789999999999986555443331 3 79999999999997544433 333 36999999999
Q ss_pred CeeeecCCccccc---cc-cchhHHHhhhcccccccccCC--CCcCC-CCccEEEccCCccccc----CCccccc-cccC
Q 048681 160 NQLTGEIPKHLAI---GC-FNLEYLVESLMFTTKETSYSY--KGKPL-NKMYGIDLSCNKLVGE----IPPQIGK-LTRV 227 (266)
Q Consensus 160 n~~~~~~~~~~~~---~~-~~l~~l~~~~~~~~~~~~~~~--~~~~~-~~L~~L~L~~n~i~~~----~~~~~~~-l~~L 227 (266)
|++++.....+.. .. .+++.+++..+.......... ..... ++|+.|+|++|.+++. ++..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 9998543333322 22 267777777665544332211 11123 4788888888888753 3444444 3578
Q ss_pred Ceeeccccccccc--------------CCeEEeeCCeee
Q 048681 228 RALNLSHNNLTGV--------------IPSLDVSYNNLN 252 (266)
Q Consensus 228 ~~L~l~~n~l~~~--------------~~~l~l~~n~i~ 252 (266)
++|++++|.+++. +..|++++|.+.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 8888888887753 227888888754
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=4.3e-19 Score=151.69 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=136.9
Q ss_pred cccCCCCCcEEECCCccC---ccCCChhh-------hcCCCCcEEeccCCcccc----cCCCCcchhhcccccccccccc
Q 048681 6 GLFRLRNLQELHMGANDL---RGTLPWCL-------ENITSLKVLDLYLNQLTR----NISSSPLLHLITSIEYLSTLNY 71 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i---~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~~~~~~~~~L~~L~~~~~ 71 (266)
.+.++++|++|++++|.+ .+.+|..+ ..+++|++|++++|.++. .++. .+..+ ++|++|++++|
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~-~~L~~L~L~~n 132 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKH-TPLEHLYLHNN 132 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHC-TTCCEEECCSS
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhC-CCCCEEECcCC
Confidence 467899999999999744 34455555 678999999999999986 2444 55565 99999999999
Q ss_pred hhhhh-ccCCCCcceecccCcccccCcccc---------cCccEEEccCccccc-cCC---ccccccCCCCcEEEccccc
Q 048681 72 LVLVS-MLHFPNSFTITMSWRPFRMPIQSH---------WHLATLYVSKKFFQG-NIP---LEIGVYFPRLMYLNLSRNE 137 (266)
Q Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~~L~~L~l~~~~ 137 (266)
..... ... ++..+..+ ++|++|++++|++++ .++ ..+.. +++|++|++++|.
T Consensus 133 ~l~~~~~~~-------------l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 133 GLGPQAGAK-------------IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNG 198 (386)
T ss_dssp CCHHHHHHH-------------HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSC
T ss_pred CCCHHHHHH-------------HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-CCCcCEEECcCCC
Confidence 83211 100 11112222 566666666666642 222 12222 5566666666666
Q ss_pred ccc-----cCCccccCCCCCCEEEccCCeee----ecCCccccccccchhHHHhhhccccccccc--CCC--CcCCCCcc
Q 048681 138 FDG-----SIPSSIGDLNSLKFLDLSHNQLT----GEIPKHLAIGCFNLEYLVESLMFTTKETSY--SYK--GKPLNKMY 204 (266)
Q Consensus 138 ~~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~--~~~~~~L~ 204 (266)
+.. ..+..+..+++|+.|++++|+++ ..++..+ ..+.+++.|+++.+........ +.. ...+++|+
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 541 12225556666666666666653 1233322 3455555555555544333111 111 12378999
Q ss_pred EEEccCCcccc----cCCccc-cccccCCeeecccccccccCC
Q 048681 205 GIDLSCNKLVG----EIPPQI-GKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 205 ~L~L~~n~i~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.|++++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999996 377777 568999999999999997763
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=128.93 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.+++++|.++. +|..+. ..+++|++++|.+++..+...|..+ ++|++|++++|.+ ..+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i-----------------~~i 72 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKI-----------------TDI 72 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCC-----------------CEE
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcC-----------------CEE
Confidence 578899988884 555543 4568899999998865454234455 6666666666542 111
Q ss_pred -ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 94 -RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 94 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
+..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+....|..+..+++|+.|++++|++++
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred CHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence 123445556666666666665 3333333335566666666666654445555566666666666666653
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=5.2e-17 Score=128.98 Aligned_cols=126 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.++.+++.+. .+|..+. ++|++|++++|.+++..+. .+..+ ++|++|++++|.+ ..+
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~L~~N~l-----------------~~i 79 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPG-VFDSL-INLKELYLGSNQL-----------------GAL 79 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCC-----------------CCC
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHH-HhhCc-cCCcEEECCCCCC-----------------CCc
Confidence 45667777666 3444333 6777777777777754444 44444 4444444444332 111
Q ss_pred c-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 94 R-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 94 ~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
+ ..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 1 11233344444444444444 333332222444444444444444 33444444444444444444444
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=7e-17 Score=127.44 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=85.9
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.++.+++.++ .+|..+. +++++|++++|.|++..+. .|..+ ++|++|++++|.+.. ..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~-~~~~l-~~L~~L~Ls~N~i~~----------------~~ 72 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPG-AFSPY-KKLRRIDLSNNQISE----------------LA 72 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTT-SSTTC-TTCCEEECCSSCCCE----------------EC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHh-HhhCC-CCCCEEECCCCcCCC----------------cC
Confidence 56788888877 4455443 6788888888888754443 56555 667777766665310 01
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
|..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+....+..+..+++|+.|++++|++++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 344556677777777777776 5666555557777777777777765556667777777777777777763
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.7e-17 Score=139.33 Aligned_cols=178 Identities=24% Similarity=0.196 Sum_probs=130.8
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcch-hhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLL-HLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
+.++.+++.+. .+|..+. ..++.|++++|.|++..+. .+. .+ ++|++|++++|.+ ..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~-~~~~~l-~~L~~L~L~~N~i-----------------~~ 78 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAE-WTPTRL-TNLHSLLLSHNHL-----------------NF 78 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTT-SSSSCC-TTCCEEECCSSCC-----------------CE
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChh-hhhhcc-cccCEEECCCCcC-----------------Cc
Confidence 57888888888 4555443 4588899999998865444 555 55 8888888888864 22
Q ss_pred cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681 93 FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171 (266)
Q Consensus 93 l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 171 (266)
++ ..+..+++|++|++++|+++ .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|...+
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 156 (361)
T 2xot_A 79 ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGT
T ss_pred cChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHh
Confidence 22 34677788999999999987 555555555889999999999998667788889999999999999988 4665543
Q ss_pred ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccccc--CCeeeccccccc
Q 048681 172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR--VRALNLSHNNLT 238 (266)
Q Consensus 172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~ 238 (266)
..+ ..+++|+.|+|++|.+++..+..+..++. ++.|++.+|++.
T Consensus 157 ~~~-----------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KDG-----------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C---------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCc-----------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 211 12678899999999988433355666766 478888888876
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.6e-17 Score=140.14 Aligned_cols=210 Identities=20% Similarity=0.150 Sum_probs=130.1
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF 84 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 84 (266)
+.++++.. ++++-+++.++ .+|..+ .+++++|++++|+|+ .+|...|..+ ++|++|++++|.+...
T Consensus 4 ~~~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l-~~L~~L~Ls~N~i~~~-------- 69 (350)
T 4ay9_X 4 HRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGF-GDLEKIEISQNDVLEV-------- 69 (350)
T ss_dssp CSSSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTC-TTCCEEEEECCTTCCE--------
T ss_pred CCccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCC-CCCCEEECcCCCCCCc--------
Confidence 34555544 56778888888 556655 368999999999998 4555356666 7777777777653211
Q ss_pred eecccCcccc-cCcccccCccE-EEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC-Ce
Q 048681 85 TITMSWRPFR-MPIQSHWHLAT-LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-NQ 161 (266)
Q Consensus 85 ~~~~~~~~l~-~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~ 161 (266)
++ ..|..++++++ +.+..|+++ .+++..+..+++|++|++++|.+....+..+....++..+++.+ ++
T Consensus 70 --------i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 70 --------IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp --------ECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred --------cChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccc
Confidence 11 12344555544 444556665 44444444466777777777766533333444445556666644 34
Q ss_pred eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccc-cccccc
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH-NNLTGV 240 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~ 240 (266)
+. .++...+.. ....++.|++++|.++ .++.......+|+.+++.+ |.++..
T Consensus 141 i~-~l~~~~f~~-------------------------~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 141 IH-TIERNSFVG-------------------------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp CC-EECTTSSTT-------------------------SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred cc-cccccchhh-------------------------cchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCC
Confidence 43 333222111 1356899999999998 5666666677899999976 556644
Q ss_pred CC----------eEEeeCCeeeecCCh-hhhhcccC
Q 048681 241 IP----------SLDVSYNNLNGKIPP-QLVELNAL 265 (266)
Q Consensus 241 ~~----------~l~l~~n~i~~~~p~-~~~~~~~l 265 (266)
++ .|++++|+|+ .+|. .+.+++.|
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L 228 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred CHHHhccCcccchhhcCCCCcC-ccChhhhccchHh
Confidence 33 8999999999 5554 56666654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=5.9e-17 Score=144.41 Aligned_cols=170 Identities=22% Similarity=0.216 Sum_probs=125.9
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
+++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. .+|++|++++|.+
T Consensus 79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~---~~L~~L~Ls~N~l---------------- 132 (571)
T 3cvr_A 79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LP---ASLKHLDVDNNQL---------------- 132 (571)
T ss_dssp CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CC---TTCCEEECCSSCC----------------
T ss_pred cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hh---cCCCEEECCCCcC----------------
Confidence 478999999999999 556 457999999999999986 654 32 3899999999874
Q ss_pred CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
..+|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|+++ .+|.
T Consensus 133 -~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 133 -TMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp -SCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred -CCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 22333 4577888888888887 4665 36788888888888874 666 54 78888888888887 6666
Q ss_pred ccccccch-------hHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccccc
Q 048681 170 LAIGCFNL-------EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR 226 (266)
Q Consensus 170 ~~~~~~~l-------~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 226 (266)
+.. ++ +.+++..+....+ +.....+++|+.|++++|.+++.+|..+..+..
T Consensus 198 ~~~---~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPV---RNHHSEETEIFFRCRENRITHI---PENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-----------CCEEEECCSSCCCCC---CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHH---hhhcccccceEEecCCCcceec---CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 432 45 6666666655433 333334889999999999999888887776554
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=7.1e-19 Score=147.40 Aligned_cols=219 Identities=16% Similarity=0.113 Sum_probs=164.1
Q ss_pred CCCcEEECCCccCccCCChhhhcC--CCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681 11 RNLQELHMGANDLRGTLPWCLENI--TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM 88 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~ 88 (266)
..++.++++++.+. +..+..+ ++++.|++++|.+++..+. +..+ ++|++|++++|.....
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~-~~L~~L~L~~~~l~~~------------ 108 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSP-FRVQHMDLSNSVIEVS------------ 108 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCC-BCCCEEECTTCEECHH------------
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccC-CCCCEEEccCCCcCHH------------
Confidence 34789999999876 5677777 9999999999999875543 5566 9999999999873111
Q ss_pred cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc-cccc-cCCccccCCCCCCEEEccCC-eeeec
Q 048681 89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN-EFDG-SIPSSIGDLNSLKFLDLSHN-QLTGE 165 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~ 165 (266)
.++..+..+++|++|++++|.+++..+..+.. +++|++|++++| .++. .++..+..+++|+.|++++| .+++.
T Consensus 109 ---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 109 ---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred ---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 13334567889999999999998777776666 899999999999 5653 25666788999999999999 88743
Q ss_pred CCcccccccc-chhHHHhhhccc-ccccccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeeccccc-cccc-
Q 048681 166 IPKHLAIGCF-NLEYLVESLMFT-TKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN-LTGV- 240 (266)
Q Consensus 166 ~~~~~~~~~~-~l~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~- 240 (266)
........++ +++.+++..+.. ......+.....+++|+.|++++|. +++..+..+..+++|++|++++|. ++..
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 2233445677 888888877642 1111122222347899999999998 776777788899999999999994 4322
Q ss_pred ---------CCeEEeeCCeee
Q 048681 241 ---------IPSLDVSYNNLN 252 (266)
Q Consensus 241 ---------~~~l~l~~n~i~ 252 (266)
+..|++++| +.
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SC
T ss_pred HHHHhcCCCCCEEeccCc-cC
Confidence 228999998 54
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=8.9e-17 Score=130.27 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
+.+++.++++++.+... + .+..+++|++|++++|.++. ++ .+..+ ++|++|++++|.+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~--~l~~l-~~L~~L~L~~N~i---------------- 75 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA--GMQFF-TNLKELHLSHNQI---------------- 75 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT--TGGGC-TTCCEEECCSSCC----------------
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch--HHhhC-CCCCEEECCCCcc----------------
Confidence 33444445555555522 2 34555555555555555542 22 34444 5555555555542
Q ss_pred CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
..++. +..+++|++|++++|+++ .++.... ++|+.|++++|.+++ + ..+..+++|+.|++++|++++ ++ .
T Consensus 76 -~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~ 145 (263)
T 1xeu_A 76 -SDLSP-LKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-M 145 (263)
T ss_dssp -CCCGG-GTTCSSCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-G
T ss_pred -CCChh-hccCCCCCEEECCCCccC-CcCcccc---CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-H
Confidence 11122 345556666666666665 3333211 566666666666652 2 245566666666666666652 22 1
Q ss_pred ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
+ . .++.|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 146 l-~--------------------------~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 L-G--------------------------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-G--------------------------GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred H-c--------------------------cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1 0 145555555555555532 3355555555555555555544
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.8e-16 Score=125.07 Aligned_cols=134 Identities=15% Similarity=0.203 Sum_probs=114.7
Q ss_pred CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681 11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW 90 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
++|++|++++|.+....+..|..+++|++|++++|.+++..|. .|..+ ++|++|++++|.+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l-~~L~~L~Ls~N~l----------------- 92 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGL-RSLNSLVLYGNKI----------------- 92 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTC-SSCCEEECCSSCC-----------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCC-cCCCEEECCCCcC-----------------
Confidence 6899999999999988888999999999999999999977677 88888 9999999999974
Q ss_pred cccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 91 RPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 91 ~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
..+|.. +..+++|++|++++|++++..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 233433 56789999999999999854444444 48999999999999986666778899999999999999874
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.5e-16 Score=130.76 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=125.0
Q ss_pred CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681 2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 81 (266)
.+++++..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+ ++|++|++++|.+.
T Consensus 59 ~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l-~~L~~L~L~~n~i~------- 125 (291)
T 1h6t_A 59 KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKDL-KKLKSLSLEHNGIS------- 125 (291)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTTC-TTCCEEECTTSCCC-------
T ss_pred ccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhccC-CCCCEEECCCCcCC-------
Confidence 456778999999999999999996554 9999999999999999985 33 46676 99999999998741
Q ss_pred CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681 82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161 (266)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 161 (266)
.+ ..+..+++|++|++++|.+++ + ..+.. +++|+.|++++|.+.+. +. +..+++|+.|++++|+
T Consensus 126 ----------~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 126 ----------DI-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp ----------CC-GGGGGCTTCCEEECCSSCCCC-C-GGGGG-CTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred ----------CC-hhhcCCCCCCEEEccCCcCCc-c-hhhcc-CCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc
Confidence 11 235678899999999999984 4 34444 89999999999999744 33 8899999999999999
Q ss_pred eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 215 (266)
+++ ++. + ..+++|+.|++++|.++.
T Consensus 190 i~~-l~~-l---------------------------~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LRA-L---------------------------AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CGG-G---------------------------TTCTTCSEEEEEEEEEEC
T ss_pred CCC-Chh-h---------------------------ccCCCCCEEECcCCcccC
Confidence 973 432 2 126788999999998874
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.8e-16 Score=123.95 Aligned_cols=156 Identities=17% Similarity=0.077 Sum_probs=121.2
Q ss_pred CcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc--ccCcccccCccEEEccCcccc
Q 048681 37 LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF--RMPIQSHWHLATLYVSKKFFQ 114 (266)
Q Consensus 37 L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~n~~~ 114 (266)
-+++++++|.++ .+|. .+. ..++.|++++|.+ ..+ +..+..+++|++|++++|.++
T Consensus 13 ~~~l~~s~n~l~-~iP~-~~~---~~~~~L~L~~N~l-----------------~~~~~~~~~~~l~~L~~L~L~~N~i~ 70 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPE-HIP---QYTAELRLNNNEF-----------------TVLEATGIFKKLPQLRKINFSNNKIT 70 (220)
T ss_dssp TTEEECCSSCCS-SCCS-CCC---TTCSEEECCSSCC-----------------CEECCCCCGGGCTTCCEEECCSSCCC
T ss_pred CCEeEeCCCCcc-cCcc-CCC---CCCCEEEcCCCcC-----------------CccCchhhhccCCCCCEEECCCCcCC
Confidence 468999999998 4776 442 4567888888863 122 123667888999999999998
Q ss_pred ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS 194 (266)
Q Consensus 115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 194 (266)
.+++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..+.
T Consensus 71 -~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------- 126 (220)
T 2v70_A 71 -DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI----------------------- 126 (220)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-----------------------
T ss_pred -EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-----------------------
Confidence 44444344488999999999999866666788899999999999998854444442
Q ss_pred CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
.+++|+.|+|++|.+++..|..|..+++|+.|++++|++.+.-+
T Consensus 127 ----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 127 ----GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ----TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ----CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 36889999999999997778889999999999999999986544
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=4.1e-16 Score=140.19 Aligned_cols=158 Identities=23% Similarity=0.339 Sum_probs=126.4
Q ss_pred CCCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681 1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF 80 (266)
Q Consensus 1 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 80 (266)
|.+++.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+..+ ++|+.|++++|.+.
T Consensus 55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l-~~L~~L~Ls~N~l~------ 122 (605)
T 1m9s_A 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDL-KKLKSLSLEHNGIS------ 122 (605)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTC-TTCCEEECTTSCCC------
T ss_pred CCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccC-CCCCEEEecCCCCC------
Confidence 3456788999999999999999996654 8999999999999999985 33 57777 99999999998741
Q ss_pred CCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
.+ ..+..+++|+.|++++|.+++ + ..+.. +++|+.|++++|.+.+..| +..+++|+.|++++|
T Consensus 123 -----------~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 123 -----------DI-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp -----------CC-GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred -----------CC-ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 11 236678899999999999984 4 34444 8899999999999985444 889999999999999
Q ss_pred eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc
Q 048681 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE 216 (266)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 216 (266)
++++ ++. + ..++.|+.|+|++|.+.+.
T Consensus 186 ~i~~-l~~-l---------------------------~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISD-LRA-L---------------------------AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCB-CGG-G---------------------------TTCTTCSEEECCSEEEECC
T ss_pred CCCC-ChH-H---------------------------ccCCCCCEEEccCCcCcCC
Confidence 9974 332 2 1267889999999988743
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=5.9e-16 Score=131.10 Aligned_cols=165 Identities=25% Similarity=0.266 Sum_probs=125.8
Q ss_pred CcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccc-cCcc-cccCccEEEccCcccc
Q 048681 37 LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFR-MPIQ-SHWHLATLYVSKKFFQ 114 (266)
Q Consensus 37 L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~L~~L~l~~n~~~ 114 (266)
-++++++++.++ .+|. .+ +..++.|++++|.+ ..++ ..+. .+++|++|++++|.++
T Consensus 20 ~~~l~c~~~~l~-~iP~-~~---~~~l~~L~Ls~N~l-----------------~~l~~~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQ-SL---PSYTALLDLSHNNL-----------------SRLRAEWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTEEECCSSCCS-SCCS-SC---CTTCSEEECCSSCC-----------------CEECTTSSSSCCTTCCEEECCSSCCC
T ss_pred CCEEEeCCCCcC-ccCc-cC---CCCCCEEECCCCCC-----------------CccChhhhhhcccccCEEECCCCcCC
Confidence 478999999998 5776 43 35688899998874 1222 2244 6788999999999998
Q ss_pred ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS 194 (266)
Q Consensus 115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 194 (266)
.+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+.
T Consensus 78 -~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~----------------------- 133 (361)
T 2xot_A 78 -FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE----------------------- 133 (361)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----------------------
T ss_pred -ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-----------------------
Confidence 45544444488999999999999866667788999999999999998854443331
Q ss_pred CCCcCCCCccEEEccCCcccccCCcc-c---cccccCCeeecccccccccCC------------eEEeeCCeee
Q 048681 195 YKGKPLNKMYGIDLSCNKLVGEIPPQ-I---GKLTRVRALNLSHNNLTGVIP------------SLDVSYNNLN 252 (266)
Q Consensus 195 ~~~~~~~~L~~L~L~~n~i~~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~------------~l~l~~n~i~ 252 (266)
.++.|+.|+|++|.++ .+|.. + ..+++|+.|++++|++++.++ .|++++|++.
T Consensus 134 ----~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 134 ----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----TCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----CcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3789999999999999 45554 4 568999999999999997653 5899999986
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=4.1e-18 Score=152.24 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=139.2
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-------------ccccCCCCcchhhcccccccc-cccch
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-------------LTRNISSSPLLHLITSIEYLS-TLNYL 72 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~~~~~L~~L~-~~~~~ 72 (266)
+..+++|+.|++++|.+. .+|..++.+++|+.|++++|. +.+..|. .+..+ ++|+.|+ +..+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l-~~L~~L~~l~~n~ 421 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYF-STLKAVDPMRAAY 421 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHH-HHHHHHCGGGHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHH-HhcccCcchhhcc
Confidence 356888889999999887 678889999999999987764 3434444 55566 7788887 44443
Q ss_pred hhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCC
Q 048681 73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSL 152 (266)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 152 (266)
. ..+.. +.........++ ...|+.|++++|.++ .+|. +.. +++|+.|++++|.++ .+|..+..+++|
T Consensus 422 ~-~~L~~---l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~-~lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 422 L-DDLRS---KFLLENSVLKME-----YADVRVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp H-HHHHH---HHHHHHHHHHHH-----HTTCSEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred c-chhhh---hhhhcccccccC-----ccCceEEEecCCCCC-CCcC-ccc-cccCcEeecCccccc-ccchhhhcCCCC
Confidence 1 11000 000000000111 125889999999998 5775 554 889999999999998 788899999999
Q ss_pred CEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccC-CccccccccCCeee
Q 048681 153 KFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEI-PPQIGKLTRVRALN 231 (266)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~ 231 (266)
+.|++++|++++ +| .+. .+++|+.|+|++|.+++.. |..+..+++|+.|+
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~---------------------------~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVA---------------------------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CEEECCSSCCCC-CG-GGT---------------------------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CEEECCCCCCCC-Cc-ccC---------------------------CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 999999999984 55 331 3788999999999999655 88899999999999
Q ss_pred cccccccccCC
Q 048681 232 LSHNNLTGVIP 242 (266)
Q Consensus 232 l~~n~l~~~~~ 242 (266)
+++|++++.+|
T Consensus 540 L~~N~l~~~~~ 550 (567)
T 1dce_A 540 LQGNSLCQEEG 550 (567)
T ss_dssp CTTSGGGGSSS
T ss_pred ecCCcCCCCcc
Confidence 99999987765
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=9.8e-16 Score=121.56 Aligned_cols=134 Identities=22% Similarity=0.207 Sum_probs=114.7
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS 89 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 89 (266)
.++|++|++++|.+.+..|..|.++++|++|++++|.++. ++...+..+ ++|++|++++|.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l-~~L~~L~Ls~N~l---------------- 100 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSL-TQLTVLDLGTNQL---------------- 100 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC-TTCCEEECCSSCC----------------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccC-CCcCEEECCCCcC----------------
Confidence 3889999999999999889999999999999999999974 554256676 9999999999974
Q ss_pred Ccccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 90 WRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 90 ~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
..++ ..+..+++|++|++++|+++ .+|..+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 101 -~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 101 -TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -CccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 2223 33567899999999999998 88888765 8999999999999985555678899999999999999874
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=3.2e-16 Score=127.01 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=127.3
Q ss_pred cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681 33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112 (266)
Q Consensus 33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 112 (266)
.+.++..++++++.+++.. .+..+ ++|+.|++++|.+ ..++ .+..+++|++|++++|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l-~~L~~L~l~~n~i-----------------~~l~-~l~~l~~L~~L~L~~N~ 74 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKEL-SGVQNFNGDNSNI-----------------QSLA-GMQFFTNLKELHLSHNQ 74 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHH-TTCSEEECTTSCC-----------------CCCT-TGGGCTTCCEEECCSSC
T ss_pred HHHHHHHHHhcCCCccccc---chhhc-CcCcEEECcCCCc-----------------ccch-HHhhCCCCCEEECCCCc
Confidence 4667888899999987532 46666 9999999998864 2233 46778899999999999
Q ss_pred ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccc
Q 048681 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETS 192 (266)
Q Consensus 113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 192 (266)
++ .+++ +. .+++|+.|++++|.+.+ ++... . ++|+.|++++|++++ ++. +
T Consensus 75 i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~~-l---------------------- 124 (263)
T 1xeu_A 75 IS-DLSP-LK-DLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TDS-L---------------------- 124 (263)
T ss_dssp CC-CCGG-GT-TCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SGG-G----------------------
T ss_pred cC-CChh-hc-cCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Chh-h----------------------
Confidence 98 4555 44 48899999999999973 44433 3 899999999999874 321 2
Q ss_pred cCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeec
Q 048681 193 YSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGK 254 (266)
Q Consensus 193 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~ 254 (266)
..++.|+.|++++|.+++ ++ .+..+++|+.|++++|++++... .|++++|.+.+.
T Consensus 125 -----~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 -----IHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----TTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred -----cCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 137899999999999984 54 58899999999999999987622 899999999854
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.9e-15 Score=116.68 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=55.8
Q ss_pred ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182 (266)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~ 182 (266)
+++|++++|.+++..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+.
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------- 99 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL----------- 99 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-----------
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-----------
Confidence 445555555554222222222355555555555555544455555555555555555555532222221
Q ss_pred hhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
.+++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 100 ----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 100 ----------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ----------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ----------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 144555555555555544455555555555555555555544
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.9e-16 Score=142.21 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=109.6
Q ss_pred CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccE
Q 048681 26 TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT 105 (266)
Q Consensus 26 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 105 (266)
..+..|..+.+|+.|+|++|.+. .+|. .++.+ +.|++|++++|.+ ..+|..+..+++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l-~~L~~L~Ls~N~l-----------------~~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKY-DFLTRLYLNGNSL-----------------TELPAEIKNLSNLRV 274 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCG-GGGGC-CSCSCCBCTTSCC-----------------SCCCGGGGGGTTCCE
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCCh-hhcCC-CCCCEEEeeCCcC-----------------cccChhhhCCCCCCE
Confidence 45778889999999999999998 6777 67777 9999999999875 456777889999999
Q ss_pred EEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhc
Q 048681 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185 (266)
Q Consensus 106 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~ 185 (266)
|++++|+++ .+|..+.. +++|+.|++++|.+. .+|..+..+++|+.|++++|++++.+|..+.........+++..+
T Consensus 275 L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp EECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 999999998 88888876 899999999999997 788889999999999999999987666555322122223344443
Q ss_pred ccccccccCCCCcCCCCccEEEccCC
Q 048681 186 FTTKETSYSYKGKPLNKMYGIDLSCN 211 (266)
Q Consensus 186 ~~~~~~~~~~~~~~~~~L~~L~L~~n 211 (266)
... ...+..|+.|+++.|
T Consensus 352 ~l~--------~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 352 RPE--------IPLPHERRFIEINTD 369 (727)
T ss_dssp CCC--------CCCCCC---------
T ss_pred ccc--------CcCccccceeEeecc
Confidence 321 223567778888777
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.5e-16 Score=146.16 Aligned_cols=71 Identities=31% Similarity=0.386 Sum_probs=36.1
Q ss_pred cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 95 MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
..+..+..|+.|++++|.+. .+|..++. +++|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 33444555555555555554 45554443 555555555555555 45555555555555555555555 44433
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.8e-15 Score=116.13 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=121.4
Q ss_pred cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681 8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT 87 (266)
Q Consensus 8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ 87 (266)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++. +. .+..+ ++|++|++++|....
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~-~l~~l-~~L~~L~l~~n~l~~------------ 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YN-PISGL-SNLERLRIMGKDVTS------------ 102 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CG-GGTTC-TTCCEEEEECTTCBG------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--ch-hhhcC-CCCCEEEeECCccCc------------
Confidence 57889999999999999 555 68999999999999998763 23 56776 999999999987421
Q ss_pred ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCCeeeecC
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNE-FDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 166 (266)
..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|. +. .++ .+..+++|+.|++++|++++ +
T Consensus 103 ----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 103 ----DKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp ----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-C
T ss_pred ----ccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-h
Confidence 12445677899999999999998666666655 8999999999998 65 455 68899999999999999984 4
Q ss_pred CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681 167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV 214 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 214 (266)
+ .+. .+++|+.|++++|.+.
T Consensus 175 ~-~l~---------------------------~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIE---------------------------DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGG---------------------------GCSSCCEEEECBC---
T ss_pred H-Hhc---------------------------cCCCCCEEEeeCcccC
Confidence 3 221 2688999999999886
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=1.2e-17 Score=150.07 Aligned_cols=257 Identities=15% Similarity=0.079 Sum_probs=129.5
Q ss_pred CCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcc---hhhcccccccccccchh---hhhcc
Q 048681 9 RLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPL---LHLITSIEYLSTLNYLV---LVSML 78 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~~L~~L~~~~~~~---~~~~~ 78 (266)
++++|++|++++|.+.+. ++..+..+++|++|++++|.+++.... .+ ...+++|+.|++.+|.. +..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 677788888888876654 223445667777777777776521111 11 12236777777776651 11111
Q ss_pred CCCCccee------------------------------cccCcccccCcccccCccEEEccCccccccCCccccccCCCC
Q 048681 79 HFPNSFTI------------------------------TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128 (266)
Q Consensus 79 ~~~~~~~~------------------------------~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 128 (266)
.++.+... ......+|..+..+++|++|++++|.+++.....+...+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 11211111 111233455566777888888888876543222222336667
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccC-----------Ceee-------------------------ecCCccccc
Q 048681 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-----------NQLT-------------------------GEIPKHLAI 172 (266)
Q Consensus 129 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------n~~~-------------------------~~~~~~~~~ 172 (266)
+.|++..+.....++.....+++|+.|++++ +.++ +..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7776663222212222233455566666652 3333 222222222
Q ss_pred cccchhHHHhhhcc-ccccccc------CCCCcCCCCccEEEccCCc--ccccCCcccc-ccccCCeeeccccccccc--
Q 048681 173 GCFNLEYLVESLMF-TTKETSY------SYKGKPLNKMYGIDLSCNK--LVGEIPPQIG-KLTRVRALNLSHNNLTGV-- 240 (266)
Q Consensus 173 ~~~~l~~l~~~~~~-~~~~~~~------~~~~~~~~~L~~L~L~~n~--i~~~~~~~~~-~l~~L~~L~l~~n~l~~~-- 240 (266)
.+.+++.+++..+. .+.+... ......+++|+.|++++|. +++..+..+. .+++|+.|++++|.+++.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 23333333332111 0111100 0001236677778776543 4544444443 377888888888887642
Q ss_pred ---------CCeEEeeCCeeeec-CChhhhhcccCC
Q 048681 241 ---------IPSLDVSYNNLNGK-IPPQLVELNALA 266 (266)
Q Consensus 241 ---------~~~l~l~~n~i~~~-~p~~~~~~~~l~ 266 (266)
+..|++++|.+++. ++..+..+++|+
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 33889999887654 344345565553
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.3e-15 Score=113.54 Aligned_cols=136 Identities=20% Similarity=0.158 Sum_probs=97.8
Q ss_pred CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681 9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT 87 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ 87 (266)
..++|++|++++|.+. +.+|..|..+++|++|++++|.+++. . .+..+ ++|++|++++|....
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l-~~L~~L~Ls~N~l~~------------ 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKL-PKLKKLELSENRIFG------------ 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCC-SSCCEEEEESCCCCS------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccC-CCCCEEECcCCcCch------------
Confidence 4578999999999987 56788888899999999999998754 3 66666 788888888776411
Q ss_pred ccCcccccCcccccCccEEEccCccccccCC--ccccccCCCCcEEEcccccccccCC---ccccCCCCCCEEEccCCee
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIP--LEIGVYFPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLSHNQL 162 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~ 162 (266)
.+|..+..+++|++|++++|.++ .++ ..+. .+++|+.|++++|.+....+ ..+..+++|+.|++++|..
T Consensus 86 ----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 86 ----GLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ----CCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ----HHHHHHhhCCCCCEEeccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 13344555778888888888876 333 3333 37788888888888763332 2677788888888888877
Q ss_pred eecCC
Q 048681 163 TGEIP 167 (266)
Q Consensus 163 ~~~~~ 167 (266)
. .+|
T Consensus 160 ~-~~~ 163 (168)
T 2ell_A 160 Q-EAP 163 (168)
T ss_dssp C-BCC
T ss_pred h-hcc
Confidence 6 444
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=7.7e-15 Score=113.20 Aligned_cols=132 Identities=20% Similarity=0.143 Sum_probs=94.4
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
++++++++.++ .+|..+.. ++++|++++|.+++..+...+..+ ++|++|++++|.+.. ..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~----------------~~ 70 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTG----------------IE 70 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCC----------------BC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCC----------------cC
Confidence 78999999987 55665543 899999999999865443135565 788888888776311 12
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 166 (266)
|..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred HhHcCCcccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 44566777888888888888744333343 3778888888888887667777888888888888888877543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.6e-14 Score=108.82 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=87.4
Q ss_pred CCCCcEEeccCCccc-ccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681 34 ITSLKVLDLYLNQLT-RNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112 (266)
Q Consensus 34 l~~L~~L~l~~n~i~-~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 112 (266)
.++|++|++++|.++ +.+|. .+.. +++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~-~~~~-----------------------------------------l~~L~~L~l~~n~ 60 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG-LTAE-----------------------------------------FVNLEFLSLINVG 60 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS-CCGG-----------------------------------------GGGCCEEEEESSC
T ss_pred cccCCEEECCCCCCChhhHHH-HHHh-----------------------------------------CCCCCEEeCcCCC
Confidence 477888999988887 44554 3333 3556666666666
Q ss_pred ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC--ccccccccchhHHHhhhcccccc
Q 048681 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIGCFNLEYLVESLMFTTKE 190 (266)
Q Consensus 113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~ 190 (266)
+++ + ..+.. +++|+.|++++|.+...+|..+..+++|+.|++++|++++ ++ ..+
T Consensus 61 l~~-~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l-------------------- 116 (168)
T 2ell_A 61 LIS-V-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPL-------------------- 116 (168)
T ss_dssp CCC-C-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGG--------------------
T ss_pred CCC-h-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHH--------------------
Confidence 653 3 33333 6777777777777765466666667778888888777763 32 111
Q ss_pred cccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeeccccccccc
Q 048681 191 TSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
..++.|+.|++++|.+++..+ ..+..+++|++|++.+|.+...
T Consensus 117 -------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 117 -------KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp -------SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred -------hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 125677888888888774333 2677788888888877776643
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.6e-16 Score=141.96 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=134.8
Q ss_pred CccccCCCCCcEEECCCcc-------------CccCCChhhhcCCCCcEEe-ccCCcccccCCCC-----cchhh-cccc
Q 048681 4 ISGLFRLRNLQELHMGAND-------------LRGTLPWCLENITSLKVLD-LYLNQLTRNISSS-----PLLHL-ITSI 63 (266)
Q Consensus 4 ~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~i~~~~~~~-----~~~~~-~~~L 63 (266)
|+.+.++++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+.. ++.. .+..+ ...|
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L 443 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEYADV 443 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhhhhhhcccccccCccCc
Confidence 5667888899999997775 5566788889999999998 66665431 1100 01111 1356
Q ss_pred cccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCC
Q 048681 64 EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIP 143 (266)
Q Consensus 64 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 143 (266)
+.|++++|.+ ..+|. +..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+++ +|
T Consensus 444 ~~L~Ls~n~l-----------------~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 444 RVLHLAHKDL-----------------TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp SEEECTTSCC-----------------SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CG
T ss_pred eEEEecCCCC-----------------CCCcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCCC-Cc
Confidence 6777777653 34565 788999999999999998 88887776 9999999999999984 66
Q ss_pred ccccCCCCCCEEEccCCeeeecC-CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc---
Q 048681 144 SSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP--- 219 (266)
Q Consensus 144 ~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--- 219 (266)
.+..+++|+.|++++|++++.. |..+. .+++|+.|++++|.+++..+.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLV---------------------------SCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGG---------------------------GCTTCCEEECTTSGGGGSSSCTTH
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHh---------------------------cCCCCCEEEecCCcCCCCccHHHH
Confidence 8899999999999999998654 65553 378999999999999954332
Q ss_pred cccccccCCeeec
Q 048681 220 QIGKLTRVRALNL 232 (266)
Q Consensus 220 ~~~~l~~L~~L~l 232 (266)
.+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 2344788998864
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.4e-15 Score=108.50 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=73.4
Q ss_pred CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681 9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT 87 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ 87 (266)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. . .+..+ ++|++|++++|.+..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l-~~L~~L~Ls~n~i~~------------ 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKL-NKLKKLELSDNRVSG------------ 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCC-TTCCEEECCSSCCCS------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcC-CCCCEEECCCCcccc------------
Confidence 4578999999999998 67788888999999999999998753 3 45554 555555555554210
Q ss_pred ccCcccccCcccccCccEEEccCcccccc-CCccccccCCCCcEEEcccccccccCC---ccccCCCCCCEEEcc
Q 048681 88 MSWRPFRMPIQSHWHLATLYVSKKFFQGN-IPLEIGVYFPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLS 158 (266)
Q Consensus 88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 158 (266)
.+|..+..+++|++|++++|.+++. .+..+.. +++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 79 ----~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 ----GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ----CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ----hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 0222233344555555555555421 1122222 4455555555555542222 234445555555443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=9.2e-14 Score=107.22 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=59.0
Q ss_pred cEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccC
Q 048681 38 KVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI 117 (266)
Q Consensus 38 ~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~ 117 (266)
++++++++.++ .+|. .+ +++++.|++++|.+ ..+|..+..+++|++|++++|.++ .+
T Consensus 13 ~~l~~~~~~l~-~ip~-~~---~~~l~~L~L~~n~i-----------------~~ip~~~~~l~~L~~L~Ls~N~i~-~i 69 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPK-GI---PRDVTELYLDGNQF-----------------TLVPKELSNYKHLTLIDLSNNRIS-TL 69 (193)
T ss_dssp TEEECTTSCCS-SCCS-CC---CTTCCEEECCSSCC-----------------CSCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred CEEEcCCCCCC-cCCC-CC---CCCCCEEECCCCcC-----------------chhHHHhhcccCCCEEECCCCcCC-Ee
Confidence 67888888887 4665 33 24566666665543 233444555566666666666665 33
Q ss_pred CccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 118 PLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
+...+..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 3333333556666666666665444455556666666666666665
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.8e-14 Score=109.49 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=99.2
Q ss_pred CCccccCCCCCcEEECCCccCccCCChhhhcCC-CCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681 3 SISGLFRLRNLQELHMGANDLRGTLPWCLENIT-SLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP 81 (266)
Q Consensus 3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 81 (266)
+.+.+.++++|++|++++|.+.. +|. +..+. +|++|++++|.+++. . .+..+ ++|++|++++|.+
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l-~~L~~L~Ls~N~l-------- 76 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--D-GFPLL-RRLKTLLVNNNRI-------- 76 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--C-CCCCC-SSCCEEECCSSCC--------
T ss_pred HHHhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--c-ccccC-CCCCEEECCCCcc--------
Confidence 44667889999999999999994 454 55554 999999999999864 3 56666 7888888888763
Q ss_pred CcceecccCcccccC-cccccCccEEEccCccccccCCc--cccccCCCCcEEEcccccccccCCcc----ccCCCCCCE
Q 048681 82 NSFTITMSWRPFRMP-IQSHWHLATLYVSKKFFQGNIPL--EIGVYFPRLMYLNLSRNEFDGSIPSS----IGDLNSLKF 154 (266)
Q Consensus 82 ~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~ 154 (266)
..+|.. +..+++|++|++++|.++ .+|. .+.. +++|+.|++++|.+. ..|.. +..+++|+.
T Consensus 77 ---------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 77 ---------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp ---------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred ---------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 223333 366778888888888886 5554 3443 778888888888886 45553 777888888
Q ss_pred EEccCCeee
Q 048681 155 LDLSHNQLT 163 (266)
Q Consensus 155 L~l~~n~~~ 163 (266)
|+++.|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 888877665
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=6.7e-16 Score=138.79 Aligned_cols=221 Identities=15% Similarity=0.019 Sum_probs=105.4
Q ss_pred ccCCCCCcEEECCCccCc---cCCChh------------hhcCCCCcEEeccCCcccccCCCCcchhhccc-cccccccc
Q 048681 7 LFRLRNLQELHMGANDLR---GTLPWC------------LENITSLKVLDLYLNQLTRNISSSPLLHLITS-IEYLSTLN 70 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~---~~~~~~------------~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~-L~~L~~~~ 70 (266)
+.++++|+.|+++++... +..|.. +..+++|++|++++|.+++..+. .+...++. |++|++++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEES
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcC
Confidence 356888999999876321 122222 22789999999999988765544 45553355 99999988
Q ss_pred chhh--hhc----cCCCCcceecccCccc--------ccCcccccCccEEEccCccccc----cCCccccccCCCCcEEE
Q 048681 71 YLVL--VSM----LHFPNSFTITMSWRPF--------RMPIQSHWHLATLYVSKKFFQG----NIPLEIGVYFPRLMYLN 132 (266)
Q Consensus 71 ~~~~--~~~----~~~~~~~~~~~~~~~l--------~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~ 132 (266)
|... ..+ ..++++..++.+...+ +.....+++|++|+++.|.+++ .++..+ ..+++|+.|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~ 226 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVK 226 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEE
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEe
Confidence 7621 111 1223332222222221 1112233444444444444431 111111 1144444555
Q ss_pred cccccccccCCccccCCCCCCEEEccCCeeeecCC--ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC
Q 048681 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC 210 (266)
Q Consensus 133 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 210 (266)
+.+|.+. .++..+..+++|+.|+++......... ......+.+++.+.+.... ....+.....+++|+.|++++
T Consensus 227 L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 227 VGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp CSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETT
T ss_pred ccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCC
Confidence 5444443 233444444445544444321110000 0011222333333332221 111222223466788888888
Q ss_pred CcccccCC-ccccccccCCeeecc
Q 048681 211 NKLVGEIP-PQIGKLTRVRALNLS 233 (266)
Q Consensus 211 n~i~~~~~-~~~~~l~~L~~L~l~ 233 (266)
|.+++... ..+..+++|++|++.
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc
Confidence 77654332 335677788888877
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.7e-13 Score=104.08 Aligned_cols=63 Identities=27% Similarity=0.287 Sum_probs=40.5
Q ss_pred ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
+++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 355666677776666 444444334667777777777776444445666777777777777776
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=5.1e-16 Score=139.53 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=33.2
Q ss_pred CCCccEEEccCCcccccCCccccc-cccCCeeeccccccccc-----------CCeEEeeCCeeeec
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGK-LTRVRALNLSHNNLTGV-----------IPSLDVSYNNLNGK 254 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~-----------~~~l~l~~n~i~~~ 254 (266)
+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++. +..|++++|.+++.
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 45666666655 444333334443 67788888877777532 33788888887543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=6.3e-14 Score=103.44 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=66.1
Q ss_pred cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC-Cccccccccch
Q 048681 99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNL 177 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l 177 (266)
.+++|++|++++|.+++ + ..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|++++.. +..+
T Consensus 40 ~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~------- 109 (149)
T 2je0_A 40 EFEELEFLSTINVGLTS-I-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL------- 109 (149)
T ss_dssp TCTTCCEEECTTSCCCC-C-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG-------
T ss_pred hcCCCcEEECcCCCCCC-c-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH-------
Confidence 34566666776666663 2 33333 667777777777776546666666777777777777776311 1111
Q ss_pred hHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeecc
Q 048681 178 EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLS 233 (266)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~ 233 (266)
..++.|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 110 --------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 110 --------------------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --------------------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --------------------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 125677888888888774433 356777888887765
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=104.48 Aligned_cols=134 Identities=20% Similarity=0.147 Sum_probs=81.7
Q ss_pred hhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEcc
Q 048681 30 CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVS 109 (266)
Q Consensus 30 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 109 (266)
.+.++.+|++|++++|.++. ++ .+.... ++|++|+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~--~~~~~~----------------------------------------~~L~~L~Ls 50 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IE--NLGATL----------------------------------------DQFDAIDFS 50 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CC--CGGGGT----------------------------------------TCCSEEECC
T ss_pred hcCCcCCceEEEeeCCCCch-hH--HhhhcC----------------------------------------CCCCEEECC
Confidence 46678899999999998873 43 344432 245566666
Q ss_pred CccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc--cccccccchhHHHhhhccc
Q 048681 110 KKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK--HLAIGCFNLEYLVESLMFT 187 (266)
Q Consensus 110 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~~~~~~ 187 (266)
+|.+++ + ..+.. +++|++|++++|.++...+..+..+++|+.|++++|+++ .+|. .+
T Consensus 51 ~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l----------------- 109 (176)
T 1a9n_A 51 DNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPL----------------- 109 (176)
T ss_dssp SSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG-----------------
T ss_pred CCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhh-----------------
Confidence 666552 2 23333 666777777777766333333466677777777777665 3332 11
Q ss_pred ccccccCCCCcCCCCccEEEccCCcccccCCcc----ccccccCCeeeccccccc
Q 048681 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ----IGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~ 238 (266)
..++.|+.|++++|.++ .+|.. +..+++|+.|++++|...
T Consensus 110 ----------~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 110 ----------ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ----------GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ----------hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 12566777777777776 45553 666777777777777655
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=8.9e-13 Score=101.65 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=99.8
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.++++++.+. .+|..+. ++|++|++++|.|+ .+|. .+..+ ++|++|++++|.+ ..+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l-~~L~~L~Ls~N~i-----------------~~i 69 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNY-KHLTLIDLSNNRI-----------------STL 69 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGC-TTCCEEECCSSCC-----------------CCC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-Hhhcc-cCCCEEECCCCcC-----------------CEe
Confidence 57888888888 4555443 58889999999887 5775 77777 8888898888874 122
Q ss_pred -ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 94 -RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 94 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
+..+..+++|++|++++|+++ .+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 234677889999999999998 5555444458999999999999985555678899999999999999874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=8.1e-16 Score=119.29 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=43.4
Q ss_pred ccCCCCCcEEECCCccCccCCCh------hhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 7 LFRLRNLQELHMGANDLRGTLPW------CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
+.....++.++++.+.+.+..|. .|..+++|++|++++|.+++ +| .+..+ ++|++|++++|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l-~~L~~L~l~~n~ 81 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGM-ENLRILSLGRNL 81 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHH-TTCCEEEEEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccC-CCCCEEECCCCC
Confidence 45566777777888877777666 88889999999999998875 44 45555 555555555443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=6.6e-13 Score=100.83 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=97.6
Q ss_pred CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92 (266)
Q Consensus 13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
.+.++++++.+.. +|..+ .++|++|++++|.+++..+. .+..+ ++|++|++++|.. ..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~ 66 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHG-VFDKL-TQLTKLSLSQNQI-----------------QS 66 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTT-TTTTC-TTCSEEECCSSCC-----------------CC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHH-HhcCc-ccccEEECCCCcc-----------------eE
Confidence 4678888888874 44433 36888888888888753333 55666 8888888888764 12
Q ss_pred cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681 93 FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165 (266)
Q Consensus 93 l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 165 (266)
++ ..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred eChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 22 23567889999999999998 55655544589999999999999855555568899999999999998743
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=6.1e-13 Score=111.08 Aligned_cols=213 Identities=12% Similarity=0.038 Sum_probs=107.3
Q ss_pred CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC--------C
Q 048681 10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF--------P 81 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~--------~ 81 (266)
+++|+++++.. .++.+.+.+|.++++|+++++.+|.++. ++...|... .++..+.............+ .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~-~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADS-VTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTT-TCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCC-CceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 8888888899999999999999999874 554366665 67777666553321111110 1
Q ss_pred Ccce--ecccCcccccC----cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEE
Q 048681 82 NSFT--ITMSWRPFRMP----IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFL 155 (266)
Q Consensus 82 ~~~~--~~~~~~~l~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 155 (266)
.+.. .......++.. -....+++.+.+.++-.. .....+...+++|+.+++..|.+......+|..+.+|+.+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 0000 00000001100 001122333333222111 0001111124556666666655553444455566666666
Q ss_pred EccCCeeeecCCccccccccchh-HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeee
Q 048681 156 DLSHNQLTGEIPKHLAIGCFNLE-YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231 (266)
Q Consensus 156 ~l~~n~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 231 (266)
++.+| ++ .+++..|.+|.+++ .+.+.. ....+.... +..+++|+.+++..|.++...+.+|.++++|+.++
T Consensus 256 ~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66655 43 34444444443333 332222 111111111 12356677777777766644445667777777665
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=6e-13 Score=111.15 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=52.3
Q ss_pred CCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc-EEEccCCcccccCCccccccccC
Q 048681 149 LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY-GIDLSCNKLVGEIPPQIGKLTRV 227 (266)
Q Consensus 149 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L 227 (266)
+++|+.+++++|+++ .+++..+..|.+++.+.+..+ ...+....+ ..+..|+ .+++.+ .++...+.+|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF--~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF--SNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHh--hCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 678888888888877 566666655544444433332 111111111 2234444 444443 2332222334444444
Q ss_pred CeeecccccccccCCeEEeeCCeeeecCChhhhhcccCC
Q 048681 228 RALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 228 ~~L~l~~n~l~~~~~~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
+ .++++.|.+...-+.+|.+|++|+
T Consensus 300 ~--------------~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 300 R--------------YVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp E--------------EEEECSSCCCEECTTTTCTTCCCC
T ss_pred C--------------EEEeCCCccCccchhhhcCCcchh
Confidence 4 455556666666677889888875
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3.8e-12 Score=96.03 Aligned_cols=109 Identities=24% Similarity=0.227 Sum_probs=84.5
Q ss_pred CccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHH
Q 048681 102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181 (266)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 181 (266)
..+.+++++|+++ .+|..+ .++++.|++++|.+++..+..+..+++|+.|++++|+++ .++...+.
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~--------- 75 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD--------- 75 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTT---------
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhcc---------
Confidence 3578889988887 677655 368899999999998666778888999999999999988 45444321
Q ss_pred hhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC
Q 048681 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241 (266)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 241 (266)
.+++|+.|+|++|.+++..+..|..+++|++|++++|+++...
T Consensus 76 -----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 76 -----------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp -----------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred -----------------CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 2678888999999888544556888888999999888887554
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=1e-14 Score=131.01 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=31.1
Q ss_pred CCCCCcEEECCCccCccCCChhhh-cCCCCcEEeccCC-cccccCCCCcchhhcccccccccccch
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLE-NITSLKVLDLYLN-QLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++++|++|++++|.++...+..+. .+++|++|++++| .++..... .+...+++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA-AIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH-HHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH-HHHHhCCCCCEEeCcCCc
Confidence 455666666666655544444443 4566666666655 33321111 222222556666665554
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.7e-14 Score=122.45 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCCcEEECCCccCccCCChhhhcC-----CCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 11 RNLQELHMGANDLRGTLPWCLENI-----TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 11 ~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
++|++|++++|.++......++.+ ++|++|++++|.++..... .+...+.+|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCC
Confidence 456777777777665444444433 5677777777766543222 222222344444444443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=6.3e-12 Score=95.23 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=84.8
Q ss_pred ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182 (266)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~ 182 (266)
-+.+++++++++ .+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|+++ .+|...+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~----------- 77 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVF----------- 77 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-----------
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHh-----------
Confidence 367888888886 7777653 68999999999998666788889999999999999988 4554432
Q ss_pred hhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242 (266)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 242 (266)
..++.|+.|+|++|.+++..+..|..+++|++|++++|++....+
T Consensus 78 ---------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 78 ---------------DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ---------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ---------------CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 126788899999999885444458888899999999998875543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1e-11 Score=93.68 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=81.8
Q ss_pred CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681 13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92 (266)
Q Consensus 13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
.+.+++++|.++. +|..+. ++|++|++++|.|++..+. .|.
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~-~~~----------------------------------- 51 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPG-VFD----------------------------------- 51 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTT-TTT-----------------------------------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChh-hhc-----------------------------------
Confidence 4678888888884 555443 7888888888888754444 343
Q ss_pred cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681 93 FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164 (266)
Q Consensus 93 l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 164 (266)
.+++|++|++++|+++ .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 52 ------~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 52 ------RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ------TCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ------CcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 3467888888888888 6676665558999999999999985555678899999999999999873
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.6e-11 Score=92.96 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=79.6
Q ss_pred cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681 14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF 93 (266)
Q Consensus 14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (266)
+.++++++.+. .+|..+. ++|++|++++|.|++..|. .|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~-~~------------------------------------- 53 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPG-VF------------------------------------- 53 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTT-TT-------------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHH-Hh-------------------------------------
Confidence 67788888876 4555543 7788888888888754443 33
Q ss_pred ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681 94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
..+++|++|++++|+++ .+|...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 54 ----~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 54 ----DHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----cCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 34467888888888887 677766555899999999999998554556889999999999999987
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=8.8e-14 Score=107.71 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=96.2
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT 85 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~ 85 (266)
.|.++++|++|++++|.+.. +| .|..+++|++|++++|.++ .+|. .+..+ ++|+.|++++|..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~-~~L~~L~L~~N~l------------ 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVA-DTLEELWISYNQI------------ 105 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHH-HHCSEEEEEEEEC------------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcC-CcCCEEECcCCcC------------
Confidence 78899999999999999996 56 8999999999999999998 5776 56565 8889998888863
Q ss_pred ecccCcccccCcccccCccEEEccCccccccCCc-cccccCCCCcEEEcccccccccCCc----------cccCCCCCCE
Q 048681 86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL-EIGVYFPRLMYLNLSRNEFDGSIPS----------SIGDLNSLKF 154 (266)
Q Consensus 86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~ 154 (266)
..+| .+..+++|++|++++|.++ .++. .....+++|+.|++++|.+....|. .+..+++|+.
T Consensus 106 -----~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 106 -----ASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp -----CCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred -----CcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 1222 3566778888888888887 3332 2223377888888888888644333 2667788888
Q ss_pred EE
Q 048681 155 LD 156 (266)
Q Consensus 155 L~ 156 (266)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=1.1e-10 Score=100.04 Aligned_cols=220 Identities=8% Similarity=0.018 Sum_probs=127.2
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPN 82 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~ 82 (266)
+|.++ +|+.+.+..+ +..+...+|.+ .+|+.+.+.. .++ .++...|..+ ++|+.+++..+. +....+....
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c-~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYC-YNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTC-TTCCEEECTTSCCSEECTTTTTTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCc-ccCCeeecCCCcceEechhhEeecc
Confidence 44443 5666666554 45455556655 3566666654 344 2333244444 666666665543 2222222222
Q ss_pred cce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681 83 SFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 83 ~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 159 (266)
+.. .-.+...++ ..|..+++|+.+.+..+ ++ .++...+.. ++|+.+.+.. .+......+|..+++|+.+.+.+
T Consensus 205 L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCchheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCC
Confidence 211 111122232 34667778888888764 43 566666653 6888888843 44435567788888888888887
Q ss_pred Ceee----ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccc
Q 048681 160 NQLT----GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235 (266)
Q Consensus 160 n~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 235 (266)
+.+. ..++...+.+|.+++.+.+.. ....+.... +..+..|+.+.+..+ ++.....+|.++ +|+.+++.+|
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL--LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT--TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh--hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 7653 135566667777777766652 222333333 334788888888655 553445678888 8888888888
Q ss_pred ccccc
Q 048681 236 NLTGV 240 (266)
Q Consensus 236 ~l~~~ 240 (266)
.+...
T Consensus 356 ~~~~l 360 (401)
T 4fdw_A 356 TPPQV 360 (401)
T ss_dssp SCCBC
T ss_pred CCccc
Confidence 76643
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.8e-13 Score=116.10 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=110.8
Q ss_pred CCCCcEEeccCCcccccCCCCcchhh----cccccccccccchhhh-hccCCCCcceecccCcccccCcccccCccEEEc
Q 048681 34 ITSLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYLVLV-SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYV 108 (266)
Q Consensus 34 l~~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 108 (266)
+++|++|++++|.++..... .+... +..|++|++++|.+.. .+.. -...+.+|++|++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~----------------l~~~L~~L~~L~L 133 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRT----------------LLPVFLRARKLGL 133 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHH----------------THHHHHTEEEEEC
T ss_pred HhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHH----------------HHHHHHhccHhhc
Confidence 47899999999998754333 33333 2588899999887311 1111 1123457899999
Q ss_pred cCccccccCCcccc----ccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCccccccccchhHH
Q 048681 109 SKKFFQGNIPLEIG----VYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180 (266)
Q Consensus 109 ~~n~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 180 (266)
++|.+++.....+. ...++|++|++++|.++.. ++..+...++|++|++++|++++.....+...+
T Consensus 134 s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L------ 207 (372)
T 3un9_A 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL------ 207 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG------
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH------
Confidence 99988743323322 2257899999999988632 445557788899999999988742211111110
Q ss_pred HhhhcccccccccCCCCcCCCCccEEEccCCccccc----CCccccccccCCeeeccccccccc
Q 048681 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE----IPPQIGKLTRVRALNLSHNNLTGV 240 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 240 (266)
...+.|+.|+|++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 208 -----------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 208 -----------------DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp -----------------GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred -----------------hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1246899999999999753 334455678999999999998844
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=4.2e-10 Score=96.30 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=141.4
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch--hhhhc-cCCCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL--VLVSM-LHFPN 82 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~--~~~~~-~~~~~ 82 (266)
+|.++ +|+++.+.. .+..+.+.+|.++.+|+.+++.+|.++ .++...|. . .+|+.+.+..+. +.... ..+++
T Consensus 153 aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~-~~L~~l~lp~~l~~I~~~aF~~~~~ 227 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y-AGIEEVLLPVTLKEIGSQAFLKTSQ 227 (401)
T ss_dssp TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T-CCCSEEECCTTCCEECTTTTTTCTT
T ss_pred hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e-cccCEEEeCCchheehhhHhhCCCC
Confidence 45553 688888876 566667778888888888888888777 45552443 4 777777776544 11111 22222
Q ss_pred cce--ecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc-----ccCCccccCCCCCCE
Q 048681 83 SFT--ITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD-----GSIPSSIGDLNSLKF 154 (266)
Q Consensus 83 ~~~--~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~ 154 (266)
+.. ...+...+.. .|.. .+|+.+.+.+ .++ .++...+..+++|+.+.+.++.+. ......|..+++|+.
T Consensus 228 L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 228 LKTIEIPENVSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCCEECCTTCCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCEEecCCCccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 222 1112333333 2333 6788888844 454 566666666889999999887664 245678889999999
Q ss_pred EEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc-cCCeeecc
Q 048681 155 LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT-RVRALNLS 233 (266)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~ 233 (266)
+.+.+ .++ .++...+.+|.+++.+.+... ...+....+ ..+ .|+.+++.+|.+.......|.+++ .++.+++-
T Consensus 305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF--~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAF--NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSS--SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhC--CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 99985 465 677777788888887766432 223333333 346 899999999988754555677774 67888877
Q ss_pred cccc
Q 048681 234 HNNL 237 (266)
Q Consensus 234 ~n~l 237 (266)
.+.+
T Consensus 379 ~~~~ 382 (401)
T 4fdw_A 379 AESV 382 (401)
T ss_dssp GGGH
T ss_pred HHHH
Confidence 6643
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=8.4e-10 Score=92.56 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=72.4
Q ss_pred cCcccccCcccccCccEEEccC-ccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681 89 SWRPFRMPIQSHWHLATLYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167 (266)
Q Consensus 89 ~~~~l~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 167 (266)
.+..+|. +..+++|++|++++ |.++ .+++..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|+++ .+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence 4566788 88888889999986 8887 555444444888999999999888777778888889999999999887 455
Q ss_pred ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV 214 (266)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 214 (266)
...+. .++ |+.|+|.+|.+.
T Consensus 97 ~~~~~--------------------------~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQ--------------------------GLS-LQELVLSGNPLH 116 (347)
T ss_dssp STTTC--------------------------SCC-CCEEECCSSCCC
T ss_pred HHHcc--------------------------cCC-ceEEEeeCCCcc
Confidence 44431 122 888999998887
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.2e-09 Score=91.62 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=21.2
Q ss_pred EEECCCc-cCccCCChhhhcCCCCcEEeccC-Ccccc
Q 048681 15 ELHMGAN-DLRGTLPWCLENITSLKVLDLYL-NQLTR 49 (266)
Q Consensus 15 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~-n~i~~ 49 (266)
.++.+++ .++ .+|. |..+++|++|+|++ |.+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~ 46 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQH 46 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCE
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCC
Confidence 4566666 666 3455 66777777777774 66664
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3.7e-09 Score=89.13 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=114.5
Q ss_pred CCCCcEEECCCccCcc-C-------CChhhhcCCCCcEEeccCCcccc-----cCCC--Ccchhhcccccccccccchhh
Q 048681 10 LRNLQELHMGANDLRG-T-------LPWCLENITSLKVLDLYLNQLTR-----NISS--SPLLHLITSIEYLSTLNYLVL 74 (266)
Q Consensus 10 l~~L~~L~l~~n~i~~-~-------~~~~~~~l~~L~~L~l~~n~i~~-----~~~~--~~~~~~~~~L~~L~~~~~~~~ 74 (266)
...++.|.+..+.+.+ . +.+++..+++|+.|.+.+..... .... ..+...++.|+.|++.++...
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4456778887665431 1 12345567899999886643210 0000 022223377888887765210
Q ss_pred hhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc-ccCCCCcEEEcccc--ccccc-----CCccc
Q 048681 75 VSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG-VYFPRLMYLNLSRN--EFDGS-----IPSSI 146 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~~~-----~~~~l 146 (266)
.++. + .+++|+.|++..+.+.......+. ..+++|+.|+|+.+ ...+. +...+
T Consensus 186 -----------------~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 186 -----------------SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp -----------------BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred -----------------eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 1111 2 257788888887776533222333 23788888887532 11101 11122
Q ss_pred --cCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc----CCcc
Q 048681 147 --GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE----IPPQ 220 (266)
Q Consensus 147 --~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~ 220 (266)
..+++|+.|++.+|++++..+..++. ...++.|+.|+|+.|.+.+. ++..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~------------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLE------------------------SDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHH------------------------CSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHh------------------------CccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 24688888888888776432222210 01267899999999988753 3333
Q ss_pred ccccccCCeeeccccccccc---------CCeEEeeCCe
Q 048681 221 IGKLTRVRALNLSHNNLTGV---------IPSLDVSYNN 250 (266)
Q Consensus 221 ~~~l~~L~~L~l~~n~l~~~---------~~~l~l~~n~ 250 (266)
+..+++|+.|++++|.++.. ..+++++++.
T Consensus 303 L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred cccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 45678999999999988733 2377887775
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=3.1e-07 Score=78.31 Aligned_cols=214 Identities=12% Similarity=0.025 Sum_probs=96.7
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh--hccCCCC
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV--SMLHFPN 82 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~ 82 (266)
.+|.++++|+.+.+..+- ..+...+|.++.+|+.+++..+ ++ .++...|..+ ..|+.+.+..+.... .......
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~-~~L~~i~~~~~~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC-ILLENMEFPNSLYYLGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC-TTCCBCCCCTTCCEECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc-cccceeecCCCceEeehhhcccCC
Confidence 345666667766666543 2245556666666766666554 33 3333244444 666665554443111 1111111
Q ss_pred cce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681 83 SFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH 159 (266)
Q Consensus 83 ~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 159 (266)
+.. .-.....+. ..+..+..++.+.+..+.. .+....+.....++.+......+ ....+..+.+|+.+.+..
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---cccccccccccccccccc
Confidence 100 000111111 1233445555555544332 22333333344555554443322 123455566666666654
Q ss_pred CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecc
Q 048681 160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233 (266)
Q Consensus 160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 233 (266)
+ ++ .+.+..+..|.+++.+.+... ...+.. .++..+.+|+.+.+..+ ++.....+|.+|.+|+.+++.
T Consensus 307 ~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 307 S-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGK--RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CC-EECTTTTTTCTTCCEECCCTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred c-cc-eechhhhcCCCCCCEEEeCCc-ccEEhH--HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3 33 344444455555554443211 111111 22233566666666554 442333456666666666654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=6.3e-09 Score=87.70 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=112.0
Q ss_pred ccCCCCCcEEECCCccCc---------cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhc
Q 048681 7 LFRLRNLQELHMGANDLR---------GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSM 77 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 77 (266)
+.++++|+.|.+...... ..+...+..+++|+.|++++|.-. ..+ .+ .. ++|++|++..+.+....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~--~~-~~-~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIG--KK-PR-PNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCC--SC-BC-TTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eec--cc-cC-CCCcEEEEecCCCChHH
Confidence 456789999998764321 124455677899999999988311 222 22 34 89999999876632111
Q ss_pred -cCCCCcceecccCcccccCcccccCccEEEccC--cccccc-----CCcccc-ccCCCCcEEEcccccccccCCcccc-
Q 048681 78 -LHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK--KFFQGN-----IPLEIG-VYFPRLMYLNLSRNEFDGSIPSSIG- 147 (266)
Q Consensus 78 -~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~--n~~~~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~- 147 (266)
..+ ....+++|++|+++. +...+. +...+. ..+++|++|++.+|.+....+..+.
T Consensus 210 l~~l---------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~ 274 (362)
T 2ra8_A 210 VEDI---------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274 (362)
T ss_dssp HHHH---------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred HHHH---------------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence 000 012568899998753 221111 111222 2378999999999988633322332
Q ss_pred --CCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccc-c
Q 048681 148 --DLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK-L 224 (266)
Q Consensus 148 --~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l 224 (266)
.+++|+.|+++.|.+++.-...+...+ + ++++|+.|++++|.+++.....+.. +
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L---~--------------------~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHV---D--------------------KIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTH---H--------------------HHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhc---c--------------------cCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 578999999999988753322222111 1 2578999999999887554444433 2
Q ss_pred ccCCeeeccccc
Q 048681 225 TRVRALNLSHNN 236 (266)
Q Consensus 225 ~~L~~L~l~~n~ 236 (266)
...++++.+.
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3556777665
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.65 E-value=4.8e-07 Score=77.10 Aligned_cols=126 Identities=12% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc-
Q 048681 5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS- 83 (266)
Q Consensus 5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~- 83 (266)
.+|.++.+|+++.+..+ ++.+...+|.++.+|+++++..+ ++ .++...|..+ .+|+.+.+..+....+..++...
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c-~~L~~i~~p~~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGC-YALKSILLPLMLKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTC-TTCCCCCCCTTCCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhccc-ccchhhcccCceeeecceeeeccc
Confidence 46889999999999854 77677889999999999999765 55 4555355555 88887776554421111111111
Q ss_pred -ce--ecccCccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc
Q 048681 84 -FT--ITMSWRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN 136 (266)
Q Consensus 84 -~~--~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (266)
.. .......+ ...|..+.+|+.+.+.++. . .++...+..+.+|+.+.+..+
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC
Confidence 00 00011111 1235555666666665432 1 344444444555555555443
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=5.4e-09 Score=79.77 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=46.0
Q ss_pred cccCccEEEccCcccccc----CCccccccCCCCcEEEc--cccccccc----CCccccCCCCCCEEEccCCeee
Q 048681 99 SHWHLATLYVSKKFFQGN----IPLEIGVYFPRLMYLNL--SRNEFDGS----IPSSIGDLNSLKFLDLSHNQLT 163 (266)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 163 (266)
..+.|++|++++|.+.+. +...+.. .+.|++|++ ++|.+... +...+...++|+.|++++|.++
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 446788888888888743 2333333 568999999 78888633 3455666789999999999886
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=2.5e-06 Score=72.69 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204 (266)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 204 (266)
+.+|+.+.+..+... ....++..+++|+.+.+.. .+. .+++..+..|.+++.+.+... ...+.. .++..+.+|+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~C~~L~ 337 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILD--DAFAGCEQLE 337 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCC
T ss_pred cccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehH--hHhhCCCCCC
Confidence 345555555443322 3334555566666666643 333 355555566666665544321 112222 2233467777
Q ss_pred EEEccCCcccccCCccccccccCCeeecccccc
Q 048681 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237 (266)
Q Consensus 205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 237 (266)
.+.+..+ ++.....+|.+|.+|+.+++.++..
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 7777544 4423334677777777777766543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=2.4e-08 Score=76.14 Aligned_cols=118 Identities=10% Similarity=0.070 Sum_probs=77.2
Q ss_pred cccccCccEEEccCc-ccccc----CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCC
Q 048681 97 IQSHWHLATLYVSKK-FFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIP 167 (266)
Q Consensus 97 ~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~ 167 (266)
+...+.|++|++++| .+.+. +...+.. .+.|++|++++|.+... +...+...++|++|++++|.+++.-.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 445678889999888 77642 2222222 56889999999888632 34455666788999999988874322
Q ss_pred ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEc--cCCccccc----CCccccccccCCeeeccccccc
Q 048681 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDL--SCNKLVGE----IPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
..+...+ ...+.|++|+| ++|.+.+. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L-----------------------~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEAL-----------------------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGG-----------------------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHH-----------------------HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2221111 11467888999 78888754 3344566678888888888775
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=2.2e-07 Score=74.64 Aligned_cols=18 Identities=50% Similarity=0.556 Sum_probs=12.8
Q ss_pred hcCCCCcEEeccCCcccc
Q 048681 32 ENITSLKVLDLYLNQLTR 49 (266)
Q Consensus 32 ~~l~~L~~L~l~~n~i~~ 49 (266)
.++++|++|+|++|.|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HHCTTCCEEECTTSCCCC
T ss_pred hhCCCCCEEECCCCCCCC
Confidence 456777777777777764
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2.6e-06 Score=68.42 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=36.8
Q ss_pred cCCCCCcEEECCCccCccC--CChhhhcCCCCcEEeccCCcccc
Q 048681 8 FRLRNLQELHMGANDLRGT--LPWCLENITSLKVLDLYLNQLTR 49 (266)
Q Consensus 8 ~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~ 49 (266)
.++++|+.|+|++|.+.+. +|..+..+++|+.|+|++|.|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 3689999999999999973 45777899999999999999974
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=0.00022 Score=60.53 Aligned_cols=249 Identities=10% Similarity=0.072 Sum_probs=127.4
Q ss_pred ccccCCC-CCcEEECCCccCccCCChhhhcCCCCcEEeccCCc---ccccCCCCcchhhcccccccccccchh--hhhc-
Q 048681 5 SGLFRLR-NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ---LTRNISSSPLLHLITSIEYLSTLNYLV--LVSM- 77 (266)
Q Consensus 5 ~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~- 77 (266)
.+|.++. .|+.+.+..+ ++.+...+|.++.+|+++.+..+. ++ .+...+|..+ .+|+.+.+..+.. ....
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c-~~L~~i~~~~~~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFC-SELTDIPILDSVTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTC-TTCCBCGGGTTCSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechhhchhc-ccceeeccCCccceehhhhh
Confidence 4567774 5999999865 676788899999999999998764 54 3555355555 7888777655431 1111
Q ss_pred cCCCCcce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681 78 LHFPNSFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF 154 (266)
Q Consensus 78 ~~~~~~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 154 (266)
..+..+.. .-.....+. ..+..+..|+.+.+..+ +. .+....+. ..+|+.+.+..+... .....+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhhcccccccccceeeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccc-cccchhhhccccce
Confidence 11111111 001111121 23445556666666543 22 34444443 345666666544332 33445555555555
Q ss_pred EEccCCeeee-----------------------------------cCCccccccccchhHHHhhhcccccccccCCCCcC
Q 048681 155 LDLSHNQLTG-----------------------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKP 199 (266)
Q Consensus 155 L~l~~n~~~~-----------------------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 199 (266)
.......... .+....+..+..++.+.+.... ..+ -..++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I--~~~aF~~ 286 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSI--GTGAFMN 286 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEE--CTTTTTT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-cee--cCccccc
Confidence 5443322110 0111112223333222211100 001 1122233
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeecccccccc----------cCCeEEeeCCeeeecCChhhhhcccCC
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG----------VIPSLDVSYNNLNGKIPPQLVELNALA 266 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~l~l~~n~i~~~~p~~~~~~~~l~ 266 (266)
+..|+.+.+.. .++.....+|.++.+|+.+++..+ ++. .+.++.+-.+ ++.+-..+|.+|.+|+
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 56777777753 344233446778888888888654 321 1336777544 5545567888888775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00017 Score=60.85 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=17.4
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeecc
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 233 (266)
+.+|+.+.+..+.++.....+|.++.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4555555555555442223345555555555553
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.4e-06 Score=63.96 Aligned_cols=90 Identities=10% Similarity=0.087 Sum_probs=61.6
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204 (266)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 204 (266)
.+|+.|++++|.++......+..+++|+.|++++|. +++..-..+. .... .+++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~----~~~~-------------------~~~~L~ 117 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS----QLEN-------------------LQKSML 117 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH----TCHH-------------------HHHHCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH----hccc-------------------ccCCCC
Confidence 378899999888875555667788999999999885 5531111111 0000 024689
Q ss_pred EEEccCCc-ccccCCccccccccCCeeeccccc-cc
Q 048681 205 GIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN-LT 238 (266)
Q Consensus 205 ~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~ 238 (266)
.|++++|. +++..-..+..+++|++|++++|. ++
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 99999885 876555567788999999999885 55
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.4e-06 Score=64.02 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=59.2
Q ss_pred CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccccCCCCcchhh---cccccccccccchhhhh--ccCCCC
Q 048681 9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTRNISSSPLLHL---ITSIEYLSTLNYLVLVS--MLHFPN 82 (266)
Q Consensus 9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~---~~~L~~L~~~~~~~~~~--~~~~~~ 82 (266)
.-.+|+.|++++|.++...-..+.++++|++|+|++|. |++..-. .+... ++.|++|++++|....+ +..
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--- 134 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIA--- 134 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHH---
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHH---
Confidence 34468999999999887666777889999999999995 7654222 33331 24689999998862111 111
Q ss_pred cceecccCcccccCcccccCccEEEccCcc
Q 048681 83 SFTITMSWRPFRMPIQSHWHLATLYVSKKF 112 (266)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 112 (266)
+.++++|++|++++|.
T Consensus 135 --------------L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 --------------LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp --------------GGGCTTCCEEEEESCT
T ss_pred --------------HhcCCCCCEEECCCCC
Confidence 3456778888888775
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=2.5e-05 Score=59.54 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCCCCcEEECCCc-cCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681 9 RLRNLQELHMGAN-DLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS 83 (266)
Q Consensus 9 ~l~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 83 (266)
+-+.|++|+++++ .|... +.+++..-+.|++|+|++|.|.+.... .+...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~a------------------------ 93 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIEL------------------------ 93 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHH------------------------
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHH------------------------
Confidence 4456777777764 55532 223333446677777777776654333 33333
Q ss_pred ceecccCcccccCcccccCccEEEccCccccccCCcccccc---CCCCcEEEcccc---cccc----cCCccccCCCCCC
Q 048681 84 FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---FPRLMYLNLSRN---EFDG----SIPSSIGDLNSLK 153 (266)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~---~~~~----~~~~~l~~l~~L~ 153 (266)
+..-+.|++|++++|.+.+.-...+... -..|+.|+++++ .+.. .+.+.+..-++|+
T Consensus 94 -------------L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~ 160 (197)
T 1pgv_A 94 -------------IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL 160 (197)
T ss_dssp -------------HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred -------------HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC
Confidence 2334568888888888874322222221 346899999765 3331 2345666778899
Q ss_pred EEEccCCeee
Q 048681 154 FLDLSHNQLT 163 (266)
Q Consensus 154 ~L~l~~n~~~ 163 (266)
.|+++.+...
T Consensus 161 ~L~l~~~~~g 170 (197)
T 1pgv_A 161 RVGISFASME 170 (197)
T ss_dssp EEECCCCCHH
T ss_pred eEeccCCCcc
Confidence 9999877654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.44 E-value=0.00074 Score=56.86 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=72.8
Q ss_pred ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee
Q 048681 7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI 86 (266)
Q Consensus 7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~ 86 (266)
+.....+..+.+...... ....++....+|+.+.+..+ ++ .+....+... ..|+.+.+..+....+
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~~L~~i~lp~~v~~I~---------- 255 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGM-KALDEIAIPKNVTSIG---------- 255 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTC-SSCCEEEECTTCCEEC----------
T ss_pred ccccccccccccccceeE-Eeecccccccccceeeeccc-ee-EEccccccCC-ccceEEEcCCCccEeC----------
Confidence 444555555555544322 44555666677777766544 22 2333244444 6666655543321000
Q ss_pred cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681 87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166 (266)
Q Consensus 87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 166 (266)
...+..+..|+.+.+..+ +. .++...+..+.+|+.+.+..+.+......+|..+.+|+.+.+..+ ++ .+
T Consensus 256 -------~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I 324 (379)
T 4h09_A 256 -------SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TI 324 (379)
T ss_dssp -------TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EE
T ss_pred -------ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EE
Confidence 011333445555555432 22 344444444556666666555554334455556666666666543 33 34
Q ss_pred CccccccccchhHHHh
Q 048681 167 PKHLAIGCFNLEYLVE 182 (266)
Q Consensus 167 ~~~~~~~~~~l~~l~~ 182 (266)
....+..|.+++.+.+
T Consensus 325 ~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 325 QVYAFKNCKALSTISY 340 (379)
T ss_dssp CTTTTTTCTTCCCCCC
T ss_pred HHHHhhCCCCCCEEEE
Confidence 4444455555554433
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=4.5e-05 Score=58.12 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=71.8
Q ss_pred cccCccEEEccCc-ccccc----CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCcc
Q 048681 99 SHWHLATLYVSKK-FFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKH 169 (266)
Q Consensus 99 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 169 (266)
+-+.|++|+++++ .+.+. +...+.. -+.|+.|+|++|.+... +.+.+..-+.|+.|++++|++++.-...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3467889999885 66532 2222332 45799999999988633 3445556688999999999887432222
Q ss_pred ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCC---cccc----cCCccccccccCCeeecccccc
Q 048681 170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN---KLVG----EIPPQIGKLTRVRALNLSHNNL 237 (266)
Q Consensus 170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n---~i~~----~~~~~~~~l~~L~~L~l~~n~l 237 (266)
+...+. .-+.|+.|+|++| .+.. .+...+...+.|+.|+++.|.+
T Consensus 118 la~aL~-----------------------~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTL-----------------------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTT-----------------------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHh-----------------------hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 221111 1356888888754 3332 2444566677888888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0019 Score=45.74 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238 (266)
Q Consensus 200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 238 (266)
+++|+.|+|++|.|+..-+..|..+++|+.|+|.+|++.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 578999999999999545556788999999999999876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.005 Score=43.50 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=28.0
Q ss_pred EEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681 15 ELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72 (266)
Q Consensus 15 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~ 72 (266)
.++-+++.++ ..+|..+. .+|++|+|++|.|+ .++...|..+ ++|+.|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l-~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDAL-PALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGC-TTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhc-cccCEEEecCCC
Confidence 4555555554 22333222 34666666666665 3444244444 666666666665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.21 E-value=3.2 Score=27.39 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=20.5
Q ss_pred cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCC
Q 048681 6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLN 45 (266)
Q Consensus 6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 45 (266)
+|.++..|+.+.|..+ ++.+-..+|.++.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4555555555555543 33344455555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.75 E-value=45 Score=21.66 Aligned_cols=44 Identities=9% Similarity=-0.052 Sum_probs=25.7
Q ss_pred cCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160 (266)
Q Consensus 116 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 160 (266)
.+....+..+.+|+.+.+..+- +.....+|..+.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3444444446667777666543 2244456677777777776653
Done!