BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048682
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40119|CBBYC_CUPNH Protein CbbY, chromosomal OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3
Length = 254
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54
RLG+ DCL +EDS GL+AA AG+ V+T T+ +A+ F+ A+ + P L +
Sbjct: 167 RLGLEGGDCLAIEDSANGLRAARAAGIPTVVTPTAFSAQDSFEGALLVLPHLGD 220
>sp|Q04541|CBBYP_CUPNH Protein CbbY, plasmid OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=cbbYP PE=3 SV=1
Length = 254
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54
RLG+ DCL +EDS GL+AA AG+ V+T T+ +A+ F+ A+ + P L +
Sbjct: 167 RLGLEAGDCLAIEDSGNGLRAARAAGIPTVVTPTTFSAQDSFEGALLVLPHLGD 220
>sp|P54607|YHCW_BACSU Uncharacterized protein YhcW OS=Bacillus subtilis (strain 168)
GN=yhcW PE=3 SV=1
Length = 220
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKD 44
LG+S +CL EDSV G AA RAGM CVI T F+D
Sbjct: 154 LGVSPAECLAFEDSVNGSIAAKRAGMKCVIVPNKVTGTLMFED 196
>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1
Length = 227
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 53
LG+ CL EDS GL +A AG+ V+T + T DF A PDLS
Sbjct: 165 LGLPPAACLAFEDSRAGLASARAAGLRVVLTPSEYTRGDDFSAADWRIPDLS 216
>sp|Q94529|GS1_DROME Probable pseudouridine-5'-monophosphatase OS=Drosophila
melanogaster GN=Gs1l PE=2 SV=2
Length = 231
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1 RLGISEK--DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVR 56
R G+ K DCLV EDS G+ AA AGM V+ +++ A + L++ +
Sbjct: 163 RFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQEKTSHATQVLASLADFK 220
>sp|P77475|YQAB_ECOLI Fructose-1-phosphate phosphatase YqaB OS=Escherichia coli (strain
K12) GN=yqaB PE=1 SV=1
Length = 188
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 RLGISEKDCLVVEDSVIGLQAATRAGMACV 30
R+G+ C+V ED+ G+QAA AGM V
Sbjct: 154 RMGVQPTQCVVFEDADFGIQAARAAGMDAV 183
>sp|Q9D5U5|HDHD1_MOUSE Pseudouridine-5'-monophosphatase OS=Mus musculus GN=Hdhd1 PE=2 SV=1
Length = 234
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 7 KDCLVVEDSVIGLQAATRAGMACVI 31
KDCLV EDS G++AA GM V+
Sbjct: 174 KDCLVFEDSPNGVEAAIHCGMQVVM 198
>sp|P95649|CBBY_RHOSH Protein CbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1
Length = 230
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 1 RLGISEKD-----CLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDA 45
RL + E D + +EDS+ GL+AA AG+ C+++ T ++F A
Sbjct: 158 RLALRELDVPPERAVALEDSLNGLRAAKGAGLRCIVSPGFYTRHEEFAGA 207
>sp|Q9PAM6|GPH_XYLFA Phosphoglycolate phosphatase OS=Xylella fastidiosa (strain 9a5c)
GN=gph PE=3 SV=1
Length = 229
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD 41
R+G+ DC+ V D V +QAA AGM ++ + +D
Sbjct: 163 RIGVMPTDCVYVGDDVSDIQAARAAGMPSMVALWGYRSHED 203
>sp|Q87BG6|GPH_XYLFT Phosphoglycolate phosphatase OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=gph PE=3 SV=1
Length = 229
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD 41
R+G+ DC+ V D V +QAA AGM ++ + +D
Sbjct: 163 RIGVMPTDCVYVGDDVRDIQAARAAGMPSMVALWGYRSHED 203
>sp|O59760|YJM7_SCHPO Putative uncharacterized hydrolase C1020.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1020.07 PE=3 SV=1
Length = 236
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 4 ISEKDCLVVEDSVIGLQAATRAGMACV 30
I ++CLV EDS+ G+Q+ AGM V
Sbjct: 173 ILPENCLVFEDSITGVQSGRAAGMKVV 199
>sp|Q6AEK8|MURI_LEIXX Glutamate racemase OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=murI PE=3 SV=1
Length = 272
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 11 VVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDL 52
V++ +V AATR G VI + A + ++DA A PDL
Sbjct: 95 VIQPAVRRAVAATRTGRVGVIGTVGTIASRAYEDAFAAAPDL 136
>sp|Q8DXX6|MUTS2_STRA5 MutS2 protein OS=Streptococcus agalactiae serotype V (strain ATCC
BAA-611 / 2603 V/R) GN=mutS2 PE=3 SV=1
Length = 779
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|Q3JZH6|MUTS2_STRA1 MutS2 protein OS=Streptococcus agalactiae serotype Ia (strain ATCC
27591 / A909 / CDC SS700) GN=mutS2 PE=3 SV=1
Length = 779
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|Q8E3J5|MUTS2_STRA3 MutS2 protein OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=mutS2 PE=3 SV=1
Length = 779
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|A2RCQ8|MUTS2_STRPG MutS2 protein OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=mutS2 PE=3 SV=1
Length = 779
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|Q8NZI5|MUTS2_STRP8 MutS2 protein OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=mutS2 PE=3 SV=1
Length = 779
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|Q99Y73|MUTS2_STRP1 MutS2 protein OS=Streptococcus pyogenes serotype M1 GN=mutS2 PE=3
SV=1
Length = 779
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL NV + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLDNVSFQSLDRLFENLEQ--FPN 129
>sp|B5XI46|MUTS2_STRPZ MutS2 protein OS=Streptococcus pyogenes serotype M49 (strain NZ131)
GN=mutS2 PE=3 SV=1
Length = 779
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 40 QDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74
Q D I Y DL+N+ + L+ L +NL+Q PN
Sbjct: 97 QSSSDMIHFYSDLNNISFQSLDRLFENLEQ--FPN 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,309,541
Number of Sequences: 539616
Number of extensions: 697891
Number of successful extensions: 2078
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 23
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)