Query 048682
Match_columns 75
No_of_seqs 242 out of 1516
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13242 Hydrolase_like: HAD-h 99.5 7.4E-15 1.6E-19 78.0 3.6 54 2-55 17-75 (75)
2 PLN02779 haloacid dehalogenase 99.5 2.8E-14 6.1E-19 91.9 5.8 63 2-64 215-277 (286)
3 PLN02575 haloacid dehalogenase 99.4 2.8E-13 6.2E-18 90.4 5.4 64 1-65 284-347 (381)
4 PLN02770 haloacid dehalogenase 99.4 3.6E-13 7.7E-18 85.0 4.9 56 1-56 176-232 (248)
5 PRK13225 phosphoglycolate phos 99.4 2.6E-13 5.7E-18 87.1 4.2 62 2-64 208-271 (273)
6 PRK11587 putative phosphatase; 99.4 5E-13 1.1E-17 82.7 5.2 57 1-58 150-206 (218)
7 PLN03243 haloacid dehalogenase 99.4 4.1E-13 8.9E-18 85.7 4.5 61 1-62 177-237 (260)
8 PRK13478 phosphonoacetaldehyde 99.4 6.9E-13 1.5E-17 84.3 5.4 63 1-64 170-258 (267)
9 PLN02811 hydrolase 99.4 5.1E-13 1.1E-17 82.8 4.6 57 3-59 154-210 (220)
10 TIGR00213 GmhB_yaeD D,D-heptos 99.4 4.4E-13 9.6E-18 80.9 4.1 55 1-55 118-174 (176)
11 COG0546 Gph Predicted phosphat 99.4 4.6E-13 1E-17 83.3 4.0 54 2-55 158-213 (220)
12 TIGR01422 phosphonatase phosph 99.4 6E-13 1.3E-17 83.8 4.5 55 1-55 168-248 (253)
13 COG0637 Predicted phosphatase/ 99.4 9.6E-13 2.1E-17 82.1 5.1 61 1-62 154-214 (221)
14 TIGR01454 AHBA_synth_RP 3-amin 99.4 7.9E-13 1.7E-17 80.9 4.4 55 1-55 143-199 (205)
15 PRK13288 pyrophosphatase PpaX; 99.4 8.5E-13 1.8E-17 81.2 4.5 55 1-55 150-206 (214)
16 PRK13226 phosphoglycolate phos 99.3 8.7E-13 1.9E-17 82.3 3.5 55 1-55 163-220 (229)
17 TIGR01449 PGP_bact 2-phosphogl 99.3 1.2E-12 2.7E-17 80.1 3.6 55 1-55 153-209 (213)
18 TIGR01452 PGP_euk phosphoglyco 99.3 4.2E-12 9E-17 81.4 5.5 54 2-55 215-279 (279)
19 PRK08942 D,D-heptose 1,7-bisph 99.3 4.1E-12 9E-17 76.8 4.8 55 1-55 115-172 (181)
20 PRK06769 hypothetical protein; 99.3 1.7E-12 3.6E-17 78.4 2.8 55 1-55 105-167 (173)
21 PRK10826 2-deoxyglucose-6-phos 99.3 2E-12 4.3E-17 80.1 3.0 56 1-56 160-216 (222)
22 PLN02940 riboflavin kinase 99.3 5.9E-12 1.3E-16 84.0 5.4 59 1-59 162-220 (382)
23 TIGR03351 PhnX-like phosphonat 99.3 5.8E-12 1.3E-16 77.6 3.9 55 1-55 157-215 (220)
24 TIGR02253 CTE7 HAD superfamily 99.3 9.2E-12 2E-16 76.6 4.5 55 1-55 162-220 (221)
25 PRK10563 6-phosphogluconate ph 99.2 2.9E-12 6.2E-17 79.1 1.8 55 1-55 154-208 (221)
26 PRK13222 phosphoglycolate phos 99.2 1.9E-11 4.1E-16 75.3 4.5 54 2-55 162-217 (226)
27 PRK06698 bifunctional 5'-methy 99.2 2.7E-11 5.7E-16 82.2 5.4 52 4-55 398-449 (459)
28 PLN02645 phosphoglycolate phos 99.2 2.2E-11 4.7E-16 79.3 4.6 55 1-55 242-303 (311)
29 PRK13223 phosphoglycolate phos 99.2 1.6E-11 3.5E-16 78.6 3.9 55 1-55 169-225 (272)
30 TIGR02254 YjjG/YfnB HAD superf 99.2 1.4E-11 3E-16 75.7 3.3 54 2-55 165-220 (224)
31 PRK10444 UMP phosphatase; Prov 99.2 3E-11 6.5E-16 76.7 4.6 54 2-55 187-245 (248)
32 PRK09449 dUMP phosphatase; Pro 99.2 3.7E-11 8.1E-16 74.2 4.1 55 1-55 162-218 (224)
33 PLN02919 haloacid dehalogenase 99.2 8E-11 1.7E-15 86.5 6.3 61 1-62 230-292 (1057)
34 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.1 9.6E-11 2.1E-15 74.2 5.3 54 2-55 191-249 (249)
35 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.1 9.2E-11 2E-15 74.6 4.5 55 1-55 191-250 (257)
36 PRK14988 GMP/IMP nucleotidase; 99.1 9.3E-11 2E-15 73.2 3.9 38 1-38 161-199 (224)
37 PHA02597 30.2 hypothetical pro 99.1 5.4E-11 1.2E-15 72.4 2.3 48 6-55 145-194 (197)
38 PRK10748 flavin mononucleotide 99.1 1.2E-10 2.6E-15 73.1 3.6 55 1-55 175-234 (238)
39 TIGR01656 Histidinol-ppas hist 99.1 1.4E-10 3E-15 68.2 3.6 35 1-35 113-147 (147)
40 KOG2914 Predicted haloacid-hal 99.1 2.9E-10 6.2E-15 71.4 5.1 57 1-57 163-220 (222)
41 TIGR01691 enolase-ppase 2,3-di 99.0 3.5E-10 7.5E-15 70.9 4.8 54 1-54 164-219 (220)
42 TIGR01990 bPGM beta-phosphoglu 99.0 2.2E-10 4.8E-15 68.6 3.0 33 1-33 153-185 (185)
43 PRK10725 fructose-1-P/6-phosph 99.0 3.4E-10 7.4E-15 68.2 3.0 33 1-33 154-186 (188)
44 TIGR01668 YqeG_hyp_ppase HAD s 99.0 5.9E-10 1.3E-14 67.1 3.6 39 1-39 103-142 (170)
45 TIGR01685 MDP-1 magnesium-depe 99.0 5.7E-10 1.2E-14 67.8 3.2 35 3-37 127-161 (174)
46 PRK09456 ?-D-glucose-1-phospha 99.0 8E-10 1.7E-14 67.5 3.9 38 1-38 153-190 (199)
47 TIGR01428 HAD_type_II 2-haloal 99.0 8.9E-10 1.9E-14 67.0 4.1 35 2-36 161-195 (198)
48 TIGR01993 Pyr-5-nucltdase pyri 98.9 1.3E-09 2.8E-14 65.7 3.4 32 1-32 153-184 (184)
49 COG1011 Predicted hydrolase (H 98.9 2.3E-09 4.9E-14 66.0 4.4 55 1-55 166-222 (229)
50 TIGR02009 PGMB-YQAB-SF beta-ph 98.9 1.1E-09 2.4E-14 65.6 2.8 32 1-32 154-185 (185)
51 TIGR01509 HAD-SF-IA-v3 haloaci 98.9 2.2E-09 4.9E-14 63.9 3.7 32 1-32 152-183 (183)
52 TIGR01261 hisB_Nterm histidino 98.9 1.9E-09 4.1E-14 64.7 3.3 36 2-37 116-151 (161)
53 PF13419 HAD_2: Haloacid dehal 98.9 2E-09 4.3E-14 63.1 3.3 31 2-32 146-176 (176)
54 TIGR02247 HAD-1A3-hyp Epoxide 98.9 2E-09 4.4E-14 66.0 3.0 36 1-36 164-199 (211)
55 TIGR01662 HAD-SF-IIIA HAD-supe 98.7 8.7E-09 1.9E-13 59.2 3.2 32 2-33 98-131 (132)
56 TIGR02252 DREG-2 REG-2-like, H 98.7 5.6E-09 1.2E-13 63.7 2.4 31 1-31 172-203 (203)
57 PHA02530 pseT polynucleotide k 98.7 1.2E-08 2.6E-13 65.6 3.6 34 3-36 265-299 (300)
58 TIGR01456 CECR5 HAD-superfamil 98.6 3.8E-08 8.3E-13 64.4 4.0 51 5-55 262-316 (321)
59 COG0647 NagD Predicted sugar p 98.6 2.8E-08 6E-13 64.1 3.2 54 2-55 203-261 (269)
60 PRK09552 mtnX 2-hydroxy-3-keto 98.6 1.1E-08 2.5E-13 63.4 1.3 59 2-63 156-215 (219)
61 TIGR01670 YrbI-phosphatas 3-de 98.6 8.7E-08 1.9E-12 56.9 4.9 50 2-54 88-137 (154)
62 TIGR01460 HAD-SF-IIA Haloacid 98.6 4.6E-08 1E-12 61.5 3.6 34 2-35 201-236 (236)
63 PRK05446 imidazole glycerol-ph 98.6 7.9E-08 1.7E-12 64.0 4.2 34 2-35 117-150 (354)
64 PLN02954 phosphoserine phospha 98.6 9.3E-08 2E-12 59.0 4.2 50 6-55 169-219 (224)
65 COG2179 Predicted hydrolase of 98.5 4E-08 8.7E-13 59.4 2.1 34 1-34 105-139 (175)
66 PRK13582 thrH phosphoserine ph 98.5 5E-08 1.1E-12 59.5 2.1 60 3-66 141-201 (205)
67 PRK11009 aphA acid phosphatase 98.5 1.7E-07 3.7E-12 59.5 4.1 31 8-38 186-216 (237)
68 TIGR01672 AphA HAD superfamily 98.5 1.7E-07 3.8E-12 59.4 4.1 30 9-38 187-216 (237)
69 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 2E-07 4.4E-12 58.7 4.2 33 2-34 208-242 (242)
70 PRK09484 3-deoxy-D-manno-octul 98.5 3.9E-07 8.5E-12 55.4 5.1 46 2-50 108-153 (183)
71 TIGR00338 serB phosphoserine p 98.5 2.5E-07 5.4E-12 56.9 4.1 47 2-52 164-210 (219)
72 TIGR01664 DNA-3'-Pase DNA 3'-p 98.4 1.1E-07 2.5E-12 57.2 2.0 28 4-31 125-160 (166)
73 KOG3085 Predicted hydrolase (H 98.4 2E-07 4.2E-12 59.2 2.7 37 1-37 180-217 (237)
74 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.4 3.1E-07 6.6E-12 55.6 3.0 35 2-36 159-193 (201)
75 TIGR01549 HAD-SF-IA-v1 haloaci 98.3 5.8E-07 1.2E-11 52.6 3.0 25 1-26 130-154 (154)
76 KOG2882 p-Nitrophenyl phosphat 98.3 4.1E-07 8.9E-12 59.3 2.3 41 1-41 236-277 (306)
77 PRK10530 pyridoxal phosphate ( 98.3 9E-07 2E-11 55.9 3.5 52 1-55 210-261 (272)
78 smart00577 CPDc catalytic doma 98.3 3.7E-07 8E-12 53.8 1.3 30 1-30 110-139 (148)
79 TIGR01548 HAD-SF-IA-hyp1 haloa 98.2 1.2E-06 2.5E-11 53.4 2.6 24 2-25 174-197 (197)
80 PRK11133 serB phosphoserine ph 98.2 4.3E-06 9.2E-11 55.1 5.1 46 1-50 259-304 (322)
81 TIGR02726 phenyl_P_delta pheny 98.2 1.5E-06 3.3E-11 52.6 2.5 50 1-53 93-142 (169)
82 cd01427 HAD_like Haloacid deha 98.1 3.2E-06 6.9E-11 47.3 3.0 31 2-32 109-139 (139)
83 TIGR03333 salvage_mtnX 2-hydro 98.1 9.9E-07 2.2E-11 54.6 0.8 25 3-27 153-177 (214)
84 KOG3040 Predicted sugar phosph 98.1 1.9E-06 4.2E-11 54.2 1.7 54 2-55 194-252 (262)
85 TIGR01493 HAD-SF-IA-v2 Haloaci 98.0 1.8E-06 3.8E-11 51.4 1.2 25 1-25 151-175 (175)
86 COG0241 HisB Histidinol phosph 97.9 1.4E-05 3.1E-10 49.0 3.4 54 2-55 118-172 (181)
87 TIGR00685 T6PP trehalose-phosp 97.9 2.6E-05 5.7E-10 49.2 4.1 55 2-61 179-240 (244)
88 PF00702 Hydrolase: haloacid d 97.8 1.4E-05 2.9E-10 48.5 2.5 25 2-26 191-215 (215)
89 PRK01158 phosphoglycolate phos 97.8 3E-05 6.6E-10 47.9 3.8 50 2-54 169-218 (230)
90 PRK00192 mannosyl-3-phosphogly 97.8 6E-05 1.3E-09 48.2 4.8 31 2-32 202-233 (273)
91 TIGR01482 SPP-subfamily Sucros 97.8 2.2E-05 4.8E-10 48.3 2.6 50 2-54 161-210 (225)
92 TIGR01485 SPP_plant-cyano sucr 97.8 4.6E-05 1E-09 48.0 4.1 35 2-36 179-213 (249)
93 TIGR01525 ATPase-IB_hvy heavy 97.8 5.4E-05 1.2E-09 52.9 4.7 45 4-51 445-489 (556)
94 TIGR01512 ATPase-IB2_Cd heavy 97.7 4.3E-05 9.4E-10 53.2 3.5 49 4-55 423-474 (536)
95 TIGR02463 MPGP_rel mannosyl-3- 97.7 5.6E-05 1.2E-09 46.7 3.6 30 1-30 190-219 (221)
96 TIGR00099 Cof-subfamily Cof su 97.7 7.2E-05 1.6E-09 47.2 4.1 50 2-54 200-249 (256)
97 TIGR01487 SPP-like sucrose-pho 97.7 6.5E-05 1.4E-09 46.3 3.8 49 2-53 159-207 (215)
98 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.6 4.6E-05 9.9E-10 46.3 2.1 32 2-33 167-198 (202)
99 PTZ00445 p36-lilke protein; Pr 97.6 7.1E-05 1.5E-09 47.1 2.8 35 1-35 173-207 (219)
100 KOG3109 Haloacid dehalogenase- 97.6 0.00013 2.9E-09 46.1 3.9 35 2-36 173-208 (244)
101 TIGR01511 ATPase-IB1_Cu copper 97.5 8.7E-05 1.9E-09 52.0 3.4 49 4-55 464-514 (562)
102 PRK10671 copA copper exporting 97.5 0.0002 4.3E-09 52.2 4.5 50 3-55 709-760 (834)
103 TIGR02244 HAD-IG-Ncltidse HAD 97.4 0.00017 3.7E-09 48.2 3.5 34 2-35 290-325 (343)
104 TIGR01489 DKMTPPase-SF 2,3-dik 97.4 7.4E-05 1.6E-09 44.6 1.5 23 6-28 162-184 (188)
105 PRK10513 sugar phosphate phosp 97.4 0.00024 5.3E-09 45.0 3.9 50 2-54 208-257 (270)
106 PF09419 PGP_phosphatase: Mito 97.4 0.00026 5.7E-09 43.0 3.5 33 4-36 134-167 (168)
107 TIGR01484 HAD-SF-IIB HAD-super 97.2 0.00024 5.1E-09 43.3 2.2 29 2-30 175-203 (204)
108 TIGR01488 HAD-SF-IB Haloacid D 97.2 0.00021 4.6E-09 42.3 1.7 24 2-25 154-177 (177)
109 PRK10976 putative hydrolase; P 97.2 0.00027 5.9E-09 44.7 2.0 34 1-35 201-234 (266)
110 TIGR02471 sucr_syn_bact_C sucr 97.1 0.00023 5.1E-09 44.4 1.7 32 2-34 171-202 (236)
111 PF08282 Hydrolase_3: haloacid 97.1 0.0012 2.7E-08 40.4 4.5 50 2-54 198-247 (254)
112 TIGR02137 HSK-PSP phosphoserin 97.0 0.00092 2E-08 41.4 3.4 28 7-34 145-172 (203)
113 COG4229 Predicted enolase-phos 97.0 0.0014 3E-08 40.8 4.1 52 2-53 173-224 (229)
114 TIGR02461 osmo_MPG_phos mannos 97.0 0.0013 2.8E-08 41.3 3.7 28 3-30 196-223 (225)
115 TIGR01681 HAD-SF-IIIC HAD-supe 96.9 0.00076 1.6E-08 38.8 2.1 23 2-24 102-126 (128)
116 PLN02887 hydrolase family prot 96.9 0.002 4.4E-08 45.7 4.5 51 1-54 518-568 (580)
117 TIGR01486 HAD-SF-IIB-MPGP mann 96.8 0.0013 2.7E-08 41.7 2.6 33 2-35 188-222 (256)
118 TIGR01686 FkbH FkbH-like domai 96.7 0.0014 3.1E-08 43.0 2.7 28 1-28 98-125 (320)
119 PRK15126 thiamin pyrimidine py 96.7 0.0011 2.5E-08 42.1 2.2 33 2-35 200-232 (272)
120 TIGR02251 HIF-SF_euk Dullard-l 96.7 0.00054 1.2E-08 41.0 0.4 32 2-33 108-139 (162)
121 PRK10187 trehalose-6-phosphate 96.6 0.0082 1.8E-07 38.5 5.6 60 2-68 186-248 (266)
122 PRK08238 hypothetical protein; 96.6 0.0047 1E-07 43.0 4.4 30 6-36 139-168 (479)
123 PRK03669 mannosyl-3-phosphogly 96.5 0.0025 5.5E-08 40.7 2.7 29 2-30 199-230 (271)
124 COG0561 Cof Predicted hydrolas 96.4 0.0016 3.5E-08 41.2 1.4 30 2-31 201-230 (264)
125 PLN02382 probable sucrose-phos 96.3 0.0065 1.4E-07 41.4 3.9 34 3-36 191-224 (413)
126 TIGR01544 HAD-SF-IE haloacid d 96.2 0.0031 6.6E-08 41.1 2.0 22 4-25 209-230 (277)
127 TIGR01663 PNK-3'Pase polynucle 96.2 0.0024 5.2E-08 44.9 1.3 26 3-28 281-306 (526)
128 PRK11033 zntA zinc/cadmium/mer 95.8 0.039 8.4E-07 40.3 6.2 47 6-55 628-676 (741)
129 COG4087 Soluble P-type ATPase 95.8 0.009 2E-07 35.3 2.3 50 6-55 93-142 (152)
130 TIGR01522 ATPase-IIA2_Ca golgi 95.5 0.031 6.7E-07 41.4 4.7 47 6-55 617-666 (884)
131 COG3700 AphA Acid phosphatase 95.4 0.013 2.9E-07 36.4 2.3 26 9-34 187-212 (237)
132 PF05116 S6PP: Sucrose-6F-phos 95.4 0.012 2.6E-07 37.4 2.1 34 2-36 177-210 (247)
133 PF08645 PNK3P: Polynucleotide 95.4 0.024 5.2E-07 33.9 3.2 27 4-30 116-153 (159)
134 COG0560 SerB Phosphoserine pho 95.0 0.026 5.7E-07 35.3 2.6 30 2-31 156-185 (212)
135 TIGR01116 ATPase-IIA1_Ca sarco 94.4 0.05 1.1E-06 40.5 3.3 48 5-55 629-678 (917)
136 KOG2961 Predicted hydrolase (H 94.0 0.088 1.9E-06 32.1 3.3 35 4-38 137-172 (190)
137 PRK14501 putative bifunctional 93.7 0.09 2E-06 38.2 3.5 53 3-62 668-722 (726)
138 PLN02423 phosphomannomutase 92.9 0.099 2.2E-06 33.2 2.4 32 5-36 199-234 (245)
139 PLN02205 alpha,alpha-trehalose 92.4 0.27 5.8E-06 36.7 4.3 56 2-64 777-845 (854)
140 PF05761 5_nucleotid: 5' nucle 92.1 0.22 4.7E-06 34.7 3.4 35 2-36 291-327 (448)
141 PF12689 Acid_PPase: Acid Phos 91.8 0.32 7E-06 29.6 3.6 37 2-38 120-156 (169)
142 COG5663 Uncharacterized conser 91.7 0.21 4.5E-06 30.8 2.6 31 9-39 136-167 (194)
143 PF06941 NT5C: 5' nucleotidase 91.6 0.13 2.9E-06 31.2 1.8 43 10-55 139-181 (191)
144 KOG2630 Enolase-phosphatase E- 91.5 0.4 8.7E-06 30.9 3.9 54 2-55 193-248 (254)
145 COG4359 Uncharacterized conser 91.4 0.099 2.2E-06 32.7 1.1 24 4-27 157-180 (220)
146 TIGR01459 HAD-SF-IIA-hyp4 HAD- 91.3 0.89 1.9E-05 28.6 5.3 26 2-27 91-116 (242)
147 PLN02580 trehalose-phosphatase 90.4 0.81 1.8E-05 31.3 4.8 51 10-66 324-379 (384)
148 PRK14502 bifunctional mannosyl 89.0 0.7 1.5E-05 33.9 3.8 34 2-36 625-660 (694)
149 PTZ00174 phosphomannomutase; P 87.6 0.48 1E-05 29.9 2.1 29 6-34 200-232 (247)
150 COG1778 Low specificity phosph 86.7 0.16 3.5E-06 30.9 -0.4 30 1-30 94-123 (170)
151 COG4030 Uncharacterized protei 85.0 2.2 4.9E-05 27.8 4.1 24 5-28 205-228 (315)
152 PF02350 Epimerase_2: UDP-N-ac 83.2 5.6 0.00012 26.6 5.6 29 9-38 260-289 (346)
153 PF04230 PS_pyruv_trans: Polys 81.3 2.8 6E-05 25.6 3.4 27 9-35 259-285 (286)
154 PLN03190 aminophospholipid tra 81.0 1.2 2.7E-05 34.5 2.0 47 7-55 872-918 (1178)
155 PF12242 Eno-Rase_NADH_b: NAD( 79.5 3 6.6E-05 22.4 2.7 31 5-35 38-73 (78)
156 PF13580 SIS_2: SIS domain; PD 78.0 6 0.00013 22.8 3.9 31 3-33 100-137 (138)
157 PF06888 Put_Phosphatase: Puta 77.8 1.1 2.3E-05 28.7 0.8 36 3-38 166-202 (234)
158 PRK12702 mannosyl-3-phosphogly 76.1 3.7 8E-05 27.4 2.9 29 8-37 228-256 (302)
159 TIGR00715 precor6x_red precorr 72.6 3.6 7.7E-05 26.6 2.2 21 16-36 213-233 (256)
160 PF06849 DUF1246: Protein of u 71.5 10 0.00022 22.1 3.7 57 18-74 12-72 (124)
161 KOG1615 Phosphoserine phosphat 71.1 1.7 3.6E-05 27.6 0.4 22 3-24 170-191 (227)
162 COG4548 NorD Nitric oxide redu 68.1 14 0.00031 26.9 4.4 57 10-67 574-635 (637)
163 PF02571 CbiJ: Precorrin-6x re 66.4 4.9 0.00011 25.9 1.9 20 17-36 210-229 (249)
164 PF07085 DRTGG: DRTGG domain; 65.1 8 0.00017 21.1 2.4 35 5-39 39-74 (105)
165 TIGR03568 NeuC_NnaA UDP-N-acet 64.9 9.6 0.00021 25.6 3.1 26 8-33 282-307 (365)
166 PRK08057 cobalt-precorrin-6x r 61.7 9.8 0.00021 24.5 2.6 20 17-36 206-225 (248)
167 PF03659 Glyco_hydro_71: Glyco 60.2 53 0.0012 22.6 6.2 20 16-35 20-39 (386)
168 TIGR03609 S_layer_CsaB polysac 59.7 17 0.00037 23.3 3.5 27 9-35 252-278 (298)
169 KOG0023 Alcohol dehydrogenase, 58.6 18 0.00039 24.8 3.4 52 3-54 178-236 (360)
170 KOG1618 Predicted phosphatase 58.2 6 0.00013 27.0 1.2 33 5-37 296-344 (389)
171 PRK05198 2-dehydro-3-deoxyphos 57.8 34 0.00074 22.5 4.6 46 19-70 215-260 (264)
172 COG0657 Aes Esterase/lipase [L 57.0 9.9 0.00022 24.5 2.1 22 2-23 147-168 (312)
173 TIGR01362 KDO8P_synth 3-deoxy- 56.0 38 0.00082 22.2 4.5 46 19-70 207-252 (258)
174 COG1148 HdrA Heterodisulfide r 55.5 23 0.00051 25.7 3.7 28 7-34 125-155 (622)
175 PF11019 DUF2608: Protein of u 54.9 17 0.00036 23.4 2.8 35 2-36 174-212 (252)
176 PRK08641 sdhA succinate dehydr 54.9 23 0.0005 25.5 3.7 29 5-33 2-33 (589)
177 TIGR01497 kdpB K+-transporting 54.7 74 0.0016 23.7 6.3 24 7-30 509-532 (675)
178 PF06506 PrpR_N: Propionate ca 54.3 17 0.00037 21.8 2.7 25 10-35 128-152 (176)
179 COG2876 AroA 3-deoxy-D-arabino 53.6 36 0.00078 22.6 4.1 47 19-71 235-281 (286)
180 TIGR01658 EYA-cons_domain eyes 53.2 28 0.00061 22.9 3.6 34 2-35 226-259 (274)
181 COG2217 ZntA Cation transport 52.7 28 0.0006 26.0 3.9 46 7-55 600-647 (713)
182 PLN03033 2-dehydro-3-deoxyphos 52.5 49 0.0011 22.1 4.7 46 19-70 226-271 (290)
183 PF13382 Adenine_deam_C: Adeni 52.5 23 0.00049 21.7 3.0 32 4-35 63-98 (171)
184 PRK12457 2-dehydro-3-deoxyphos 51.7 55 0.0012 21.8 4.8 46 19-70 223-268 (281)
185 PRK10162 acetyl esterase; Prov 51.6 15 0.00032 24.1 2.2 23 2-24 149-171 (318)
186 TIGR02329 propionate_PrpR prop 51.6 19 0.00042 25.7 2.9 26 9-35 147-172 (526)
187 PRK11590 hypothetical protein; 50.6 23 0.0005 21.7 2.9 28 3-30 173-200 (211)
188 TIGR01524 ATPase-IIIB_Mg magne 50.4 28 0.0006 26.4 3.7 45 8-55 604-650 (867)
189 PF00657 Lipase_GDSL: GDSL-lik 50.2 9.6 0.00021 22.8 1.1 11 9-19 1-11 (234)
190 TIGR01517 ATPase-IIB_Ca plasma 50.1 23 0.0005 27.0 3.2 46 8-55 670-717 (941)
191 COG0466 Lon ATP-dependent Lon 50.1 19 0.0004 27.2 2.7 59 7-66 713-771 (782)
192 PLN02645 phosphoglycolate phos 50.1 36 0.00078 22.3 3.9 26 6-31 111-136 (311)
193 TIGR01523 ATPase-IID_K-Na pota 50.0 26 0.00055 27.2 3.5 47 7-55 746-794 (1053)
194 TIGR01652 ATPase-Plipid phosph 50.0 17 0.00037 28.0 2.6 47 7-55 769-815 (1057)
195 PF07859 Abhydrolase_3: alpha/ 49.6 5.9 0.00013 23.7 0.1 22 2-23 66-87 (211)
196 TIGR01106 ATPase-IIC_X-K sodiu 49.4 22 0.00048 27.3 3.1 22 8-29 685-706 (997)
197 KOG3120 Predicted haloacid deh 49.1 8.2 0.00018 25.0 0.7 35 3-37 179-214 (256)
198 smart00775 LNS2 LNS2 domain. T 48.7 19 0.00041 21.3 2.2 26 10-35 123-150 (157)
199 PF05822 UMPH-1: Pyrimidine 5' 48.3 7.2 0.00016 25.3 0.4 31 6-36 179-213 (246)
200 TIGR02061 aprA adenosine phosp 48.1 32 0.00069 25.1 3.6 26 8-33 1-33 (614)
201 TIGR01170 rplA_mito ribosomal 47.6 32 0.00069 20.3 3.0 25 7-31 53-77 (141)
202 smart00481 POLIIIAc DNA polyme 46.9 23 0.0005 17.5 2.1 19 18-36 20-38 (67)
203 TIGR01361 DAHP_synth_Bsub phos 46.2 63 0.0014 20.9 4.5 46 18-69 214-259 (260)
204 TIGR01533 lipo_e_P4 5'-nucleot 44.8 17 0.00036 23.7 1.7 14 9-22 191-204 (266)
205 cd01846 fatty_acyltransferase_ 44.6 11 0.00025 23.6 0.9 12 9-20 2-13 (270)
206 PRK10517 magnesium-transportin 44.3 43 0.00092 25.6 3.9 45 8-55 639-685 (902)
207 PRK13397 3-deoxy-7-phosphohept 44.2 60 0.0013 21.1 4.1 45 19-69 205-249 (250)
208 PF01936 NYN: NYN domain; Int 43.7 43 0.00093 18.7 3.2 24 10-33 101-126 (146)
209 PRK15122 magnesium-transportin 43.6 47 0.001 25.4 4.0 45 8-55 639-685 (903)
210 PF03486 HI0933_like: HI0933-l 43.4 42 0.0009 23.2 3.5 28 8-35 2-32 (409)
211 PRK01122 potassium-transportin 42.8 1.1E+02 0.0024 22.8 5.7 21 8-28 509-529 (679)
212 KOG2368 Hydroxymethylglutaryl- 42.8 44 0.00095 22.0 3.3 55 15-73 95-149 (316)
213 COG0052 RpsB Ribosomal protein 42.6 85 0.0018 20.6 4.6 45 7-54 157-204 (252)
214 cd01841 NnaC_like NnaC (CMP-Ne 42.5 17 0.00037 21.1 1.3 11 7-17 1-11 (174)
215 cd01847 Triacylglycerol_lipase 42.5 13 0.00028 23.8 0.9 13 7-19 2-14 (281)
216 PF09298 FAA_hydrolase_N: Fuma 42.5 6.8 0.00015 22.0 -0.3 23 6-28 16-38 (107)
217 TIGR01647 ATPase-IIIA_H plasma 41.8 41 0.00089 25.1 3.4 45 8-55 536-582 (755)
218 COG0821 gcpE 1-hydroxy-2-methy 41.2 54 0.0012 22.5 3.6 36 4-40 101-138 (361)
219 TIGR01545 YfhB_g-proteo haloac 41.2 38 0.00081 21.0 2.8 26 5-30 174-199 (210)
220 TIGR01657 P-ATPase-V P-type AT 41.2 28 0.00062 26.9 2.6 21 8-28 803-823 (1054)
221 cd01835 SGNH_hydrolase_like_3 40.9 15 0.00032 21.8 0.9 12 6-17 1-12 (193)
222 PRK08275 putative oxidoreducta 40.7 50 0.0011 23.5 3.6 26 8-33 11-41 (554)
223 PRK07057 sdhA succinate dehydr 40.7 46 0.00099 24.0 3.5 27 8-34 14-43 (591)
224 PRK10017 colanic acid biosynth 40.7 98 0.0021 21.6 5.0 28 10-37 330-357 (426)
225 PRK13278 purP 5-formaminoimida 40.6 54 0.0012 22.4 3.6 21 16-36 30-50 (358)
226 PRK09078 sdhA succinate dehydr 40.5 44 0.00096 24.1 3.4 26 8-33 14-42 (598)
227 PRK08958 sdhA succinate dehydr 40.0 63 0.0014 23.3 4.0 28 7-34 8-38 (588)
228 PRK07804 L-aspartate oxidase; 40.0 50 0.0011 23.5 3.5 27 7-33 17-46 (541)
229 cd06831 PLPDE_III_ODC_like_AZI 39.7 68 0.0015 21.9 4.0 32 2-33 76-109 (394)
230 COG0279 GmhA Phosphoheptose is 39.5 93 0.002 19.3 4.4 20 17-36 127-146 (176)
231 PRK08626 fumarate reductase fl 39.5 45 0.00097 24.5 3.3 27 7-33 6-35 (657)
232 TIGR01358 DAHP_synth_II 3-deox 39.2 72 0.0016 22.6 4.1 53 18-71 329-381 (443)
233 PRK13398 3-deoxy-7-phosphohept 39.0 1.1E+02 0.0024 19.9 4.9 49 16-70 214-262 (266)
234 PRK14869 putative manganese-de 38.6 91 0.002 22.1 4.6 33 5-37 180-212 (546)
235 PLN02291 phospho-2-dehydro-3-d 38.4 73 0.0016 22.8 4.0 53 18-71 349-401 (474)
236 PRK06452 sdhA succinate dehydr 38.4 52 0.0011 23.6 3.4 27 7-33 6-35 (566)
237 TIGR01812 sdhA_frdA_Gneg succi 38.3 52 0.0011 23.4 3.4 26 8-33 1-29 (566)
238 PRK10886 DnaA initiator-associ 38.3 50 0.0011 20.5 3.0 21 17-37 127-147 (196)
239 cd01840 SGNH_hydrolase_yrhL_li 38.1 20 0.00044 20.6 1.2 25 8-32 1-26 (150)
240 PF12831 FAD_oxidored: FAD dep 38.1 32 0.00068 23.6 2.3 27 8-34 1-30 (428)
241 PRK07395 L-aspartate oxidase; 37.9 54 0.0012 23.5 3.4 26 8-33 11-38 (553)
242 PF07405 DUF1506: Protein of u 37.6 11 0.00024 21.8 0.0 21 3-23 59-80 (127)
243 COG2099 CobK Precorrin-6x redu 37.5 25 0.00054 23.0 1.6 20 16-35 212-231 (257)
244 TIGR01494 ATPase_P-type ATPase 37.4 36 0.00078 23.8 2.5 22 7-28 407-428 (499)
245 PRK08673 3-deoxy-7-phosphohept 37.4 92 0.002 21.1 4.3 45 20-70 284-328 (335)
246 COG1759 5-formaminoimidazole-4 37.2 56 0.0012 22.4 3.2 58 17-74 31-92 (361)
247 PRK07121 hypothetical protein; 37.0 62 0.0014 22.5 3.6 26 8-33 22-50 (492)
248 cd05710 SIS_1 A subgroup of th 36.6 60 0.0013 18.0 3.0 22 16-37 64-85 (120)
249 cd05014 SIS_Kpsf KpsF-like pro 36.6 59 0.0013 17.9 2.9 22 16-37 64-85 (128)
250 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.4 59 0.0013 17.8 2.9 21 16-36 63-83 (126)
251 PRK13396 3-deoxy-7-phosphohept 36.4 82 0.0018 21.6 4.0 46 18-69 291-336 (352)
252 PRK10528 multifunctional acyl- 36.2 25 0.00053 21.2 1.4 13 5-17 9-21 (191)
253 PRK06116 glutathione reductase 36.2 67 0.0015 22.0 3.6 26 8-33 6-34 (450)
254 PLN03017 trehalose-phosphatase 35.8 67 0.0014 22.1 3.5 54 8-66 304-361 (366)
255 PF13528 Glyco_trans_1_3: Glyc 35.6 65 0.0014 20.5 3.3 27 9-35 96-123 (318)
256 PF14871 GHL6: Hypothetical gl 35.5 40 0.00087 19.6 2.2 16 19-34 50-65 (132)
257 PRK05424 rplA 50S ribosomal pr 35.4 53 0.0012 21.0 2.8 24 7-31 72-95 (230)
258 COG1432 Uncharacterized conser 35.4 86 0.0019 19.1 3.7 33 11-43 117-151 (181)
259 PF04273 DUF442: Putative phos 35.3 78 0.0017 17.8 3.3 61 10-71 9-86 (110)
260 KOG2004 Mitochondrial ATP-depe 35.1 82 0.0018 24.2 4.0 59 8-67 838-896 (906)
261 PRK13277 5-formaminoimidazole- 35.0 38 0.00083 23.3 2.2 58 17-74 30-92 (366)
262 cd01844 SGNH_hydrolase_like_6 35.0 25 0.00055 20.6 1.3 10 8-17 1-10 (177)
263 PF01474 DAHP_synth_2: Class-I 34.9 35 0.00075 24.1 2.0 53 18-71 332-384 (439)
264 TIGR01169 rplA_bact ribosomal 34.6 57 0.0012 20.8 2.9 24 7-31 71-94 (227)
265 cd01480 vWA_collagen_alpha_1-V 34.4 69 0.0015 19.1 3.2 53 6-58 110-178 (186)
266 PRK06481 fumarate reductase fl 34.4 65 0.0014 22.6 3.4 26 8-33 63-91 (506)
267 PRK13937 phosphoheptose isomer 34.3 1.1E+02 0.0024 18.5 5.4 20 17-36 124-143 (188)
268 PRK07206 hypothetical protein; 34.2 1.5E+02 0.0032 20.0 5.3 29 7-35 3-34 (416)
269 PRK07803 sdhA succinate dehydr 34.2 64 0.0014 23.5 3.4 26 8-33 10-38 (626)
270 PRK00881 purH bifunctional pho 34.0 1.3E+02 0.0029 21.8 4.8 34 4-37 450-487 (513)
271 PRK15424 propionate catabolism 33.8 54 0.0012 23.7 2.9 26 9-35 157-182 (538)
272 cd06167 LabA_like LabA_like pr 33.7 94 0.002 17.6 4.3 25 11-35 106-132 (149)
273 PLN00128 Succinate dehydrogena 33.5 67 0.0015 23.5 3.4 27 8-34 52-81 (635)
274 KOG0209 P-type ATPase [Inorgan 33.2 26 0.00056 27.2 1.3 29 8-36 808-836 (1160)
275 COG0474 MgtA Cation transport 33.1 43 0.00093 25.6 2.5 24 8-31 640-663 (917)
276 PRK08010 pyridine nucleotide-d 33.1 77 0.0017 21.6 3.5 28 7-34 4-34 (441)
277 PTZ00139 Succinate dehydrogena 32.8 70 0.0015 23.3 3.4 26 8-33 31-59 (617)
278 cd01829 SGNH_hydrolase_peri2 S 32.7 30 0.00065 20.5 1.4 10 8-17 1-10 (200)
279 PRK06854 adenylylsulfate reduc 32.5 77 0.0017 23.0 3.5 26 8-33 13-43 (608)
280 cd01836 FeeA_FeeB_like SGNH_hy 32.4 27 0.00058 20.6 1.1 12 6-17 2-13 (191)
281 PF03767 Acid_phosphat_B: HAD 32.3 20 0.00043 22.7 0.5 26 9-34 195-223 (229)
282 PRK14010 potassium-transportin 32.1 2.2E+02 0.0047 21.3 6.7 45 8-55 505-551 (673)
283 cd01820 PAF_acetylesterase_lik 31.9 33 0.00072 20.9 1.5 14 5-18 31-44 (214)
284 PRK07573 sdhA succinate dehydr 31.1 79 0.0017 23.1 3.4 26 8-33 37-65 (640)
285 PRK08401 L-aspartate oxidase; 30.6 88 0.0019 21.7 3.5 28 7-34 2-32 (466)
286 PRK15381 pathogenicity island 30.5 27 0.00059 24.2 1.0 14 6-19 142-155 (408)
287 COG3273 Uncharacterized conser 30.5 38 0.00081 21.4 1.5 31 6-36 126-156 (204)
288 TIGR00661 MJ1255 conserved hyp 30.3 92 0.002 20.2 3.4 25 10-34 96-121 (321)
289 PRK07251 pyridine nucleotide-d 30.3 96 0.0021 21.1 3.6 27 7-33 4-33 (438)
290 TIGR00236 wecB UDP-N-acetylglu 30.3 1.6E+02 0.0035 19.3 4.6 25 10-34 277-301 (365)
291 cd05006 SIS_GmhA Phosphoheptos 29.6 84 0.0018 18.6 3.0 35 15-50 117-151 (177)
292 PF14314 Methyltrans_Mon: Viru 29.5 57 0.0012 24.4 2.5 26 1-26 318-343 (675)
293 PRK06263 sdhA succinate dehydr 29.4 90 0.002 22.1 3.4 28 7-34 8-37 (543)
294 KOG3107 Predicted haloacid deh 29.4 75 0.0016 22.4 2.9 28 8-35 426-453 (468)
295 PRK05294 carB carbamoyl phosph 29.3 1.9E+02 0.0041 22.7 5.2 30 6-35 554-597 (1066)
296 PRK12834 putative FAD-binding 29.3 98 0.0021 22.0 3.6 27 7-33 5-34 (549)
297 cd01831 Endoglucanase_E_like E 29.2 32 0.00069 20.0 1.1 8 9-16 2-9 (169)
298 KOG1515 Arylacetamide deacetyl 29.1 48 0.001 22.4 2.0 17 2-18 161-177 (336)
299 PF13839 PC-Esterase: GDSL/SGN 28.9 37 0.0008 21.0 1.3 12 6-17 15-26 (263)
300 PRK05192 tRNA uridine 5-carbox 28.9 85 0.0018 23.2 3.3 27 8-34 6-35 (618)
301 PRK11440 putative hydrolase; P 28.6 72 0.0016 19.1 2.6 16 19-34 41-56 (188)
302 COG2327 WcaK Polysaccharide py 28.3 2.1E+02 0.0046 20.0 5.2 28 10-37 288-315 (385)
303 PRK06069 sdhA succinate dehydr 28.1 93 0.002 22.3 3.3 27 7-33 6-38 (577)
304 PRK08274 tricarballylate dehyd 28.1 1.1E+02 0.0024 21.0 3.6 27 7-33 5-34 (466)
305 PRK12835 3-ketosteroid-delta-1 28.1 95 0.0021 22.4 3.4 27 7-33 12-41 (584)
306 TIGR00288 conserved hypothetic 28.1 1.5E+02 0.0032 18.0 4.7 28 9-36 110-139 (160)
307 CHL00129 rpl1 ribosomal protei 27.9 84 0.0018 20.1 2.8 24 7-31 72-95 (229)
308 TIGR01790 carotene-cycl lycope 27.8 1.2E+02 0.0025 20.1 3.6 26 8-33 1-29 (388)
309 PRK12837 3-ketosteroid-delta-1 27.8 90 0.0019 22.0 3.2 26 7-33 8-36 (513)
310 COG0731 Fe-S oxidoreductases [ 27.5 1.1E+02 0.0024 20.5 3.4 59 4-62 78-147 (296)
311 PRK09231 fumarate reductase fl 27.3 96 0.0021 22.4 3.3 26 8-33 6-36 (582)
312 KOG3349 Predicted glycosyltran 27.3 49 0.0011 20.3 1.6 43 10-54 48-90 (170)
313 cd01295 AdeC Adenine deaminase 27.2 81 0.0017 21.6 2.8 21 5-25 321-341 (422)
314 cd01825 SGNH_hydrolase_peri1 S 27.1 31 0.00067 20.1 0.7 11 8-18 1-11 (189)
315 PRK06847 hypothetical protein; 27.0 1.3E+02 0.0028 19.7 3.7 29 5-33 3-34 (375)
316 TIGR03127 RuMP_HxlB 6-phospho 27.0 99 0.0021 18.3 2.9 20 17-36 90-109 (179)
317 PF13045 DUF3905: Protein of u 27.0 28 0.00061 18.7 0.5 10 8-17 33-42 (84)
318 PRK06111 acetyl-CoA carboxylas 26.9 1.3E+02 0.0028 20.6 3.8 27 7-33 3-32 (450)
319 COG0854 PdxJ Pyridoxal phospha 26.6 1.3E+02 0.0029 19.5 3.5 28 9-36 128-155 (243)
320 PRK10262 thioredoxin reductase 26.6 78 0.0017 20.5 2.6 28 5-32 5-35 (321)
321 TIGR01176 fum_red_Fp fumarate 26.5 1E+02 0.0022 22.3 3.3 26 8-33 5-35 (580)
322 cd01832 SGNH_hydrolase_like_1 26.5 36 0.00078 19.8 1.0 9 9-17 2-10 (185)
323 PF00070 Pyr_redox: Pyridine n 26.5 89 0.0019 15.8 2.4 26 8-33 1-29 (80)
324 cd05005 SIS_PHI Hexulose-6-pho 26.4 1E+02 0.0022 18.2 3.0 22 16-37 92-113 (179)
325 PF02811 PHP: PHP domain; Int 26.3 46 0.001 19.1 1.4 18 18-35 21-38 (175)
326 TIGR02653 Lon_rel_chp conserve 26.3 74 0.0016 23.8 2.6 29 8-36 613-641 (675)
327 PRK06175 L-aspartate oxidase; 26.3 1.1E+02 0.0023 21.1 3.3 26 8-33 6-33 (433)
328 PRK12770 putative glutamate sy 26.2 95 0.0021 20.5 3.0 29 5-33 17-48 (352)
329 TIGR01178 ade adenine deaminas 26.1 84 0.0018 22.7 2.8 21 5-25 442-462 (552)
330 PF06437 ISN1: IMP-specific 5' 25.9 55 0.0012 22.9 1.8 31 3-35 366-401 (408)
331 PF05362 Lon_C: Lon protease ( 25.9 64 0.0014 20.2 2.0 29 8-36 144-172 (204)
332 PRK08071 L-aspartate oxidase; 25.8 1.4E+02 0.0029 21.2 3.8 28 6-33 3-32 (510)
333 cd01830 XynE_like SGNH_hydrola 25.8 37 0.00079 20.5 0.9 9 9-17 2-10 (204)
334 PRK04176 ribulose-1,5-biphosph 25.8 1.4E+02 0.003 19.1 3.6 27 7-33 26-55 (257)
335 TIGR01811 sdhA_Bsu succinate d 25.7 86 0.0019 22.8 2.8 25 9-33 1-28 (603)
336 PF07992 Pyr_redox_2: Pyridine 25.7 74 0.0016 18.6 2.2 25 8-32 1-28 (201)
337 TIGR01292 TRX_reduct thioredox 25.6 73 0.0016 19.9 2.3 26 8-33 2-30 (300)
338 PF10113 Fibrillarin_2: Fibril 25.6 1.6E+02 0.0034 21.2 3.9 34 3-36 219-256 (505)
339 PLN02268 probable polyamine ox 25.5 1.4E+02 0.0031 20.2 3.8 25 8-32 2-29 (435)
340 PRK01122 potassium-transportin 25.4 1.5E+02 0.0033 22.2 4.1 62 9-71 439-507 (679)
341 cd01834 SGNH_hydrolase_like_2 25.4 46 0.001 19.3 1.3 11 8-18 3-13 (191)
342 cd06353 PBP1_BmpA_Med_like Per 25.4 82 0.0018 20.0 2.5 22 14-35 188-209 (258)
343 TIGR01369 CPSaseII_lrg carbamo 25.2 2.5E+02 0.0055 22.0 5.3 28 7-34 555-596 (1050)
344 cd07945 DRE_TIM_CMS Leptospira 25.2 2E+02 0.0043 18.8 4.3 23 12-34 73-95 (280)
345 TIGR03845 sulfopyru_alph sulfo 25.1 1.5E+02 0.0033 17.5 3.5 22 12-33 69-91 (157)
346 PF13472 Lipase_GDSL_2: GDSL-l 25.0 37 0.0008 19.0 0.8 8 10-17 1-8 (179)
347 CHL00067 rps2 ribosomal protei 24.9 1.4E+02 0.0031 18.9 3.5 32 7-38 162-196 (230)
348 KOG3698 Hyaluronoglucosaminida 24.8 1.6E+02 0.0034 22.2 3.9 18 17-34 78-95 (891)
349 cd00885 cinA Competence-damage 24.7 44 0.00096 20.1 1.1 35 2-36 31-68 (170)
350 cd01838 Isoamyl_acetate_hydrol 24.7 39 0.00084 19.7 0.9 10 8-17 1-10 (199)
351 PRK06361 hypothetical protein; 24.6 95 0.0021 18.9 2.6 18 19-36 16-33 (212)
352 PF09432 THP2: Tho complex sub 24.6 16 0.00034 21.5 -0.8 14 8-21 105-118 (132)
353 PF13241 NAD_binding_7: Putati 24.4 1E+02 0.0022 16.7 2.5 34 2-35 3-39 (103)
354 TIGR01813 flavo_cyto_c flavocy 24.3 1.3E+02 0.0028 20.4 3.4 26 8-33 1-30 (439)
355 PF04694 Corona_3: Coronavirus 24.3 36 0.00079 16.9 0.6 8 9-16 39-46 (60)
356 PF00289 CPSase_L_chain: Carba 24.3 86 0.0019 17.5 2.2 19 17-35 16-34 (110)
357 PF01134 GIDA: Glucose inhibit 24.2 75 0.0016 22.1 2.2 26 8-33 1-29 (392)
358 PTZ00225 60S ribosomal protein 24.2 1.1E+02 0.0025 19.3 2.9 25 7-32 60-84 (214)
359 cd01822 Lysophospholipase_L1_l 24.1 39 0.00085 19.4 0.8 10 8-17 2-11 (177)
360 COG2877 KdsA 3-deoxy-D-manno-o 24.1 2.2E+02 0.0048 18.8 4.5 46 19-70 222-267 (279)
361 TIGR03614 RutB pyrimidine util 24.1 1E+02 0.0022 19.2 2.7 19 18-36 54-72 (226)
362 PF01380 SIS: SIS domain SIS d 24.0 1.3E+02 0.0029 16.2 3.0 22 16-37 70-91 (131)
363 COG0191 Fba Fructose/tagatose 24.0 1.3E+02 0.0027 20.2 3.2 26 13-38 85-110 (286)
364 PF05834 Lycopene_cycl: Lycope 24.0 1.5E+02 0.0033 19.8 3.7 26 8-33 1-31 (374)
365 cd01827 sialate_O-acetylestera 24.0 43 0.00094 19.6 1.0 9 8-16 2-10 (188)
366 TIGR01858 tag_bisphos_ald clas 23.5 1.3E+02 0.0029 19.8 3.2 26 13-38 82-107 (282)
367 TIGR00623 sula cell division i 23.5 1.2E+02 0.0027 18.6 2.8 33 2-34 80-117 (168)
368 cd01837 SGNH_plant_lipase_like 23.4 37 0.00079 22.1 0.6 12 9-20 3-14 (315)
369 PLN02151 trehalose-phosphatase 23.4 1.5E+02 0.0032 20.4 3.5 51 9-65 291-346 (354)
370 PF13549 ATP-grasp_5: ATP-gras 23.3 2.1E+02 0.0045 18.1 4.3 66 2-68 22-89 (222)
371 PRK05945 sdhA succinate dehydr 23.1 1.3E+02 0.0028 21.6 3.3 27 8-34 5-36 (575)
372 PF02784 Orn_Arg_deC_N: Pyrido 23.1 1.4E+02 0.0031 18.7 3.3 30 3-32 61-92 (251)
373 PRK07494 2-octaprenyl-6-methox 23.1 2.3E+02 0.0051 18.7 4.4 31 3-33 4-37 (388)
374 PRK11337 DNA-binding transcrip 23.0 1.2E+02 0.0026 19.4 3.0 34 4-37 185-225 (292)
375 PRK06292 dihydrolipoamide dehy 23.0 1.6E+02 0.0034 20.2 3.6 26 8-33 5-33 (460)
376 COG0034 PurF Glutamine phospho 22.8 1.3E+02 0.0029 21.5 3.2 30 6-35 348-384 (470)
377 cd04501 SGNH_hydrolase_like_4 22.7 43 0.00094 19.5 0.8 10 8-17 2-11 (183)
378 COG2845 Uncharacterized protei 22.6 2.7E+02 0.0059 19.2 5.7 19 6-24 116-135 (354)
379 PF00107 ADH_zinc_N: Zinc-bind 22.6 1.4E+02 0.0031 16.1 3.2 23 8-30 16-38 (130)
380 PRK05249 soluble pyridine nucl 22.5 2.1E+02 0.0045 19.6 4.1 28 6-33 5-35 (461)
381 PRK07818 dihydrolipoamide dehy 22.5 1.6E+02 0.0034 20.4 3.6 27 7-33 5-34 (466)
382 COG4770 Acetyl/propionyl-CoA c 22.4 1.9E+02 0.0042 21.5 4.0 19 17-35 16-34 (645)
383 KOG0238 3-Methylcrotonyl-CoA c 22.3 2.5E+02 0.0054 20.9 4.5 19 17-35 12-30 (670)
384 cd01839 SGNH_arylesterase_like 22.3 50 0.0011 19.8 1.0 9 9-17 2-10 (208)
385 PF14488 DUF4434: Domain of un 22.2 1.9E+02 0.0041 17.4 4.6 18 17-34 24-41 (166)
386 COG2232 Predicted ATP-dependen 22.2 2.8E+02 0.0061 19.3 5.4 28 8-35 13-41 (389)
387 COG3075 GlpB Anaerobic glycero 22.2 1.8E+02 0.004 20.3 3.7 30 8-37 4-36 (421)
388 PRK12266 glpD glycerol-3-phosp 22.2 1.6E+02 0.0035 20.8 3.6 27 7-33 7-36 (508)
389 PRK09424 pntA NAD(P) transhydr 22.2 2.2E+02 0.0048 20.5 4.3 30 4-33 163-195 (509)
390 PF13086 AAA_11: AAA domain; P 22.1 55 0.0012 19.5 1.2 11 5-15 216-226 (236)
391 PRK07709 fructose-bisphosphate 22.0 1.6E+02 0.0034 19.6 3.3 25 14-38 88-112 (285)
392 PF11341 DUF3143: Protein of u 22.0 80 0.0017 16.2 1.6 12 15-26 52-63 (63)
393 PRK00414 gmhA phosphoheptose i 21.9 2E+02 0.0044 17.5 5.7 20 17-36 129-148 (192)
394 PRK05732 2-octaprenyl-6-methox 21.8 1.9E+02 0.004 19.1 3.7 28 7-34 4-37 (395)
395 TIGR03358 VI_chp_5 type VI sec 21.8 2E+02 0.0044 17.5 3.9 53 14-67 60-112 (159)
396 PLN03156 GDSL esterase/lipase; 21.7 54 0.0012 22.1 1.2 14 7-20 28-41 (351)
397 COG3236 Uncharacterized protei 21.7 45 0.00097 20.2 0.7 15 5-19 120-134 (162)
398 PRK13800 putative oxidoreducta 21.7 1.5E+02 0.0033 22.6 3.6 26 8-33 15-43 (897)
399 PRK08020 ubiF 2-octaprenyl-3-m 21.6 1.8E+02 0.0038 19.3 3.6 28 6-33 5-35 (391)
400 COG0541 Ffh Signal recognition 21.4 81 0.0018 22.4 2.0 30 4-33 211-247 (451)
401 PRK11302 DNA-binding transcrip 21.3 2.1E+02 0.0046 18.1 3.8 18 17-34 193-210 (284)
402 cd01828 sialate_O-acetylestera 21.3 58 0.0013 18.7 1.1 9 9-17 2-10 (169)
403 TIGR00441 gmhA phosphoheptose 21.3 1.9E+02 0.004 16.8 5.4 20 17-36 97-116 (154)
404 KOG0622 Ornithine decarboxylas 21.2 1.6E+02 0.0035 21.0 3.3 32 2-33 119-152 (448)
405 cd05017 SIS_PGI_PMI_1 The memb 21.2 1.4E+02 0.0031 16.4 2.7 20 16-35 60-79 (119)
406 TIGR03492 conserved hypothetic 21.2 1.4E+02 0.0031 20.3 3.1 29 5-34 93-121 (396)
407 cd01821 Rhamnogalacturan_acety 21.2 53 0.0011 19.5 1.0 9 8-16 2-10 (198)
408 COG2355 Zn-dependent dipeptida 21.1 1.5E+02 0.0032 20.1 3.1 33 6-38 101-133 (313)
409 PF06189 5-nucleotidase: 5'-nu 21.1 1.4E+02 0.0029 19.8 2.8 27 10-37 236-262 (264)
410 KOG2470 Similar to IMP-GMP spe 21.1 98 0.0021 21.8 2.3 31 4-34 344-376 (510)
411 PF00356 LacI: Bacterial regul 21.0 1.1E+02 0.0025 14.3 2.3 28 48-75 19-46 (46)
412 cd04795 SIS SIS domain. SIS (S 21.0 1.2E+02 0.0027 15.1 2.3 18 16-33 64-81 (87)
413 PRK07236 hypothetical protein; 21.0 2E+02 0.0044 19.1 3.8 30 4-33 4-36 (386)
414 PF09949 DUF2183: Uncharacteri 21.0 1.1E+02 0.0023 17.0 2.1 17 6-22 64-81 (100)
415 TIGR02032 GG-red-SF geranylger 20.9 2E+02 0.0043 17.8 3.6 27 8-34 2-31 (295)
416 PRK02947 hypothetical protein; 20.9 1.9E+02 0.0042 18.3 3.5 33 4-36 104-143 (246)
417 COG1750 Archaeal serine protea 20.9 1.3E+02 0.0028 22.2 2.9 30 9-38 150-179 (579)
418 smart00812 Alpha_L_fucos Alpha 20.8 2.6E+02 0.0055 19.3 4.3 17 19-35 87-103 (384)
419 COG3240 Phospholipase/lecithin 20.8 61 0.0013 22.4 1.2 15 6-20 29-43 (370)
420 cd06830 PLPDE_III_ADC Type III 20.7 1.8E+02 0.0038 20.0 3.5 41 15-55 72-124 (409)
421 PF06014 DUF910: Bacterial pro 20.6 37 0.0008 17.4 0.2 14 9-22 17-30 (62)
422 PF05728 UPF0227: Uncharacteri 20.6 2.2E+02 0.0048 17.4 4.4 33 5-37 57-92 (187)
423 TIGR02468 sucrsPsyn_pln sucros 20.5 80 0.0017 24.9 1.9 34 1-34 967-1002(1050)
424 PF02358 Trehalose_PPase: Treh 20.5 1.1E+02 0.0023 19.0 2.3 22 6-27 184-205 (235)
425 PF08468 MTS_N: Methyltransfer 20.4 52 0.0011 19.6 0.8 19 7-25 99-117 (155)
426 PTZ00029 60S ribosomal protein 20.4 1.6E+02 0.0034 18.6 3.0 25 7-32 62-86 (216)
427 COG4594 FecB ABC-type Fe3+-cit 20.3 1.9E+02 0.0042 19.4 3.4 32 4-37 47-78 (310)
428 COG0019 LysA Diaminopimelate d 20.2 1.9E+02 0.0041 20.0 3.5 31 3-33 93-125 (394)
429 PF15648 Tox-REase-5: Restrict 20.1 71 0.0015 17.5 1.3 11 3-13 33-43 (95)
430 PF01266 DAO: FAD dependent ox 20.1 2.4E+02 0.0052 17.9 3.9 28 8-35 1-31 (358)
431 PF08235 LNS2: LNS2 (Lipin/Ned 20.0 79 0.0017 19.1 1.5 25 11-35 124-150 (157)
No 1
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.54 E-value=7.4e-15 Score=78.00 Aligned_cols=54 Identities=26% Similarity=0.473 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEecC-HHhHHHHHHcCCeEEEEcCCCCchhhh----hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDS-VIGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs-~~di~aA~~AG~~~i~v~~~~~~~~~~----~~~~~~~~~~~~l 55 (75)
++++|++|+||||+ .+||++|+++|+.+|+|.+|....+.. ..++++++++.|+
T Consensus 17 ~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 17 LGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp HTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred cCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 57889999999999 899999999999999999988665443 4789999998763
No 2
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=2.8e-14 Score=91.90 Aligned_cols=63 Identities=52% Similarity=0.856 Sum_probs=55.7
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 64 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 64 (75)
+|++|++|+|||||.+|+++|++|||++|++.+++.....+..++++++++.++.+..++-++
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~~~~~ 277 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDFDLLF 277 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhhHHHH
Confidence 688999999999999999999999999999998876555556789999999999988887654
No 3
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.42 E-value=2.8e-13 Score=90.39 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=53.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 65 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 65 (75)
++|++|++|+|||||..|++||++|||++|+|.++... ..+..++++++++.++.+..+++++.
T Consensus 284 ~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~-~~l~~Ad~iI~s~~EL~~~~l~~l~~ 347 (381)
T PLN02575 284 LLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPI-YELGAADLVVRRLDELSIVDLKNLAD 347 (381)
T ss_pred HcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCh-hHhcCCCEEECCHHHHHHHHHhhhhh
Confidence 47899999999999999999999999999999876433 33456888999999998877766543
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=3.6e-13 Score=85.02 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhh-hhccceeeCCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD-FKDAIAIYPDLSNVR 56 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~-~~~~~~~~~~~~~l~ 56 (75)
+++++|++|+|||||..|+++|++|||++|++.|+...... ...++++++++.++.
T Consensus 176 ~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~ 232 (248)
T PLN02770 176 VLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPK 232 (248)
T ss_pred HhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhH
Confidence 36889999999999999999999999999999987643222 246889999999864
No 5
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.41 E-value=2.6e-13 Score=87.09 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=50.8
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCCCHHHHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNVRLKDLELLL 64 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~ 64 (75)
++++|++|+|||||..|+++|++|||.+|++.++......+ ..++++++++.++ +..+.+++
T Consensus 208 ~~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL-~~~~~~~~ 271 (273)
T PRK13225 208 EGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL-LQAVTQLM 271 (273)
T ss_pred hCcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH-HHHHHHHh
Confidence 57899999999999999999999999999999987654433 4688999998887 55554443
No 6
>PRK11587 putative phosphatase; Provisional
Probab=99.40 E-value=5e-13 Score=82.69 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=47.6
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLK 58 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 58 (75)
++|++|++|+|||||..|+++|++|||++|++.++... .....++++++++.++...
T Consensus 150 ~~g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 150 LLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred HcCCCcccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhheeEE
Confidence 37899999999999999999999999999999876532 2345678899999888543
No 7
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.39 E-value=4.1e-13 Score=85.66 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=48.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLEL 62 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 62 (75)
++|++|++|+|||||.+|+++|++|||++|++. +......+..++++++++.++....+..
T Consensus 177 ~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~~~~ 237 (260)
T PLN03243 177 RLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVDLKN 237 (260)
T ss_pred HhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHHHhh
Confidence 368999999999999999999999999999997 4433334556788999998885554443
No 8
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.39 E-value=6.9e-13 Score=84.31 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=49.3
Q ss_pred CCCCC-CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCc-----------------------hhhh--hccceeeCCCCC
Q 048682 1 RLGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSSTA-----------------------EQDF--KDAIAIYPDLSN 54 (75)
Q Consensus 1 ~l~~~-p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~-----------------------~~~~--~~~~~~~~~~~~ 54 (75)
++|+. |++|+|||||.+|+++|++|||++|+|.+++.. ...+ ..++++++++.+
T Consensus 170 ~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~~~~~ 249 (267)
T PRK13478 170 ELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVIDTIAD 249 (267)
T ss_pred HcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeehhhHHH
Confidence 36775 699999999999999999999999999988752 1222 468899999988
Q ss_pred CCHHHHHHHH
Q 048682 55 VRLKDLELLL 64 (75)
Q Consensus 55 l~~~~l~~~~ 64 (75)
+ .+.+..+.
T Consensus 250 l-~~~l~~~~ 258 (267)
T PRK13478 250 L-PAVIADIE 258 (267)
T ss_pred H-HHHHHHHH
Confidence 8 45554433
No 9
>PLN02811 hydrolase
Probab=99.39 E-value=5.1e-13 Score=82.81 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHH
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKD 59 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 59 (75)
|++|++|+||||+..|+++|++|||++|++.++.........++++++++.++....
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEE 210 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHH
Confidence 489999999999999999999999999999887654434456788999999887655
No 10
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.39 E-value=4.4e-13 Score=80.86 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeE-EEEcCCCCchhhh-hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMAC-VITYTSSTAEQDF-KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~-i~v~~~~~~~~~~-~~~~~~~~~~~~l 55 (75)
+++++|++|+|||||.+|+++|++||+++ +++.++....... ..++++++++.++
T Consensus 118 ~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 118 ELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred HcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 36899999999999999999999999998 7998876532222 3588999988776
No 11
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.38 E-value=4.6e-13 Score=83.26 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=45.9
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchh--hhhccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ--DFKDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l 55 (75)
++++|++++|||||.+|+++|++||+++|+|.|++.... ....++++++++.++
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred hCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 567788999999999999999999999999999985222 235689999998777
No 12
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.38 E-value=6e-13 Score=83.83 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=45.2
Q ss_pred CCCCC-CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCc-----------------------hhhh--hccceeeCCCCC
Q 048682 1 RLGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSSTA-----------------------EQDF--KDAIAIYPDLSN 54 (75)
Q Consensus 1 ~l~~~-p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~-----------------------~~~~--~~~~~~~~~~~~ 54 (75)
++++. |++|+|||||++|+++|++|||++|+|.+++.. ...+ ..++++++++.+
T Consensus 168 ~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~e 247 (253)
T TIGR01422 168 ELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVIDTLAE 247 (253)
T ss_pred HcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEehhcHHH
Confidence 36774 999999999999999999999999999988752 1222 357899999877
Q ss_pred C
Q 048682 55 V 55 (75)
Q Consensus 55 l 55 (75)
+
T Consensus 248 l 248 (253)
T TIGR01422 248 L 248 (253)
T ss_pred H
Confidence 6
No 13
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.37 E-value=9.6e-13 Score=82.13 Aligned_cols=61 Identities=34% Similarity=0.428 Sum_probs=43.4
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLEL 62 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 62 (75)
+||++|++||+||||.+|++||++|||.+|++..+.... ..........+.....+..+..
T Consensus 154 ~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 214 (221)
T COG0637 154 RLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRP-HLDPLDAHGADTVLLDLAELPA 214 (221)
T ss_pred HcCCChHHeEEEecchhHHHHHHHCCCEEEEecCCCCcc-ccchhhhhhcchhhccHHHHHH
Confidence 478999999999999999999999999999998743321 2223334444444444455443
No 14
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.37 E-value=7.9e-13 Score=80.91 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l 55 (75)
+++++|++|+||||+.+|+++|+++||++|++.|++.....+ ..++++++++.++
T Consensus 143 ~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l 199 (205)
T TIGR01454 143 LLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL 199 (205)
T ss_pred HcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH
Confidence 368899999999999999999999999999999998655443 3578888887665
No 15
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.36 E-value=8.5e-13 Score=81.23 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l 55 (75)
+++++|++|+|||||.+|+++|++|||++|++.|+......+ ..++++++++.++
T Consensus 150 ~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l 206 (214)
T PRK13288 150 LLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL 206 (214)
T ss_pred HcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH
Confidence 367899999999999999999999999999999986544333 3578888887766
No 16
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.34 E-value=8.7e-13 Score=82.32 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=45.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchh-h--hhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ-D--FKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~-~--~~~~~~~~~~~~~l 55 (75)
++|++|++|+||||+.+|+++|++|||++|++.|++.... . ...++++++++.++
T Consensus 163 ~l~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 163 RIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred HhCCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 3689999999999999999999999999999998875221 2 24588899888766
No 17
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.33 E-value=1.2e-12 Score=80.06 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=45.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l 55 (75)
+++++|++|+|||||.+|+++|++|||++|++.+++.....+ ..++++++++.++
T Consensus 153 ~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred HcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 368899999999999999999999999999999877543322 4578888888765
No 18
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.31 E-value=4.2e-12 Score=81.39 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=45.9
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhhh----------ccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFK----------DAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~~----------~~~~~~~~~~~l 55 (75)
++++|++|+||||+. +||++|+++||++|+|.||....+.+. .++++++++.++
T Consensus 215 ~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 215 FSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred hCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 688999999999995 999999999999999999987554432 478999988764
No 19
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.30 E-value=4.1e-12 Score=76.79 Aligned_cols=55 Identities=29% Similarity=0.288 Sum_probs=43.8
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh-hcc--ceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF-KDA--IAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~-~~~--~~~~~~~~~l 55 (75)
++|++|++|+||||+.+|+++|+++||++|++.++....... ..+ +++++++.++
T Consensus 115 ~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el 172 (181)
T PRK08942 115 RLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADL 172 (181)
T ss_pred HcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHH
Confidence 368899999999999999999999999999998876532222 234 7788887665
No 20
>PRK06769 hypothetical protein; Validated
Probab=99.29 E-value=1.7e-12 Score=78.41 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=43.0
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCch------hhh--hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE------QDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~------~~~--~~~~~~~~~~~~l 55 (75)
+++++|++|+||||+.+|+++|++|||++|++.++.... ..+ ..++++++++.++
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 368899999999999999999999999999999876431 111 2456677776655
No 21
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.29 E-value=2e-12 Score=80.06 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=46.3
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchh-hhhccceeeCCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ-DFKDAIAIYPDLSNVR 56 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~ 56 (75)
++|++|++|+|||||.+|+++|++|||++|++.++....+ ....++.++.++.++.
T Consensus 160 ~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~ 216 (222)
T PRK10826 160 KLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELT 216 (222)
T ss_pred HcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHh
Confidence 3689999999999999999999999999999988764432 2345788888888774
No 22
>PLN02940 riboflavin kinase
Probab=99.29 E-value=5.9e-12 Score=84.03 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=49.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKD 59 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 59 (75)
+++++|++|+|||||..|+++|++|||++|++.++.........++.+++++.++....
T Consensus 162 ~lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 162 RLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEK 220 (382)
T ss_pred HcCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHH
Confidence 36899999999999999999999999999999987644334456788999998886443
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.26 E-value=5.8e-12 Score=77.64 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=44.2
Q ss_pred CCCCC-CCcEEEEecCHHhHHHHHHcCCeE-EEEcCCCCchhhh--hccceeeCCCCCC
Q 048682 1 RLGIS-EKDCLVVEDSVIGLQAATRAGMAC-VITYTSSTAEQDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~-p~~~l~igDs~~di~aA~~AG~~~-i~v~~~~~~~~~~--~~~~~~~~~~~~l 55 (75)
++++. |++|+||||+.+|+++|+++||++ |++.++......+ ..++++++++.++
T Consensus 157 ~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred HcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 36776 799999999999999999999999 8998876544333 3567788887665
No 24
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.25 E-value=9.2e-12 Score=76.64 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=43.7
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchh---hhhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQ---DFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~---~~~~~~~~~~~~~~l 55 (75)
++|++|++|+|||||. +|+++|+++||++|++.++..... ....++++++++.++
T Consensus 162 ~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 3689999999999998 899999999999999988764321 123467788887654
No 25
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.24 E-value=2.9e-12 Score=79.13 Aligned_cols=55 Identities=20% Similarity=0.406 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
+++++|++|+|||||..|+++|++|||++|++..+.........++.+++++.++
T Consensus 154 ~~~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 208 (221)
T PRK10563 154 AMNVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQL 208 (221)
T ss_pred HcCCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHH
Confidence 3688999999999999999999999999998865432211112233345555444
No 26
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.21 E-value=1.9e-11 Score=75.30 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhh--hhccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD--FKDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~--~~~~~~~~~~~~~l 55 (75)
++++|++|+||||+.+|+++|+++|+++|++.++...... ...++++++++.++
T Consensus 162 ~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l 217 (226)
T PRK13222 162 LGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL 217 (226)
T ss_pred cCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHH
Confidence 6788999999999999999999999999999988653322 24678899988777
No 27
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.21 E-value=2.7e-11 Score=82.23 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
++|++|+|||||.+|+++|++|||++|++.++......+..++++++++.++
T Consensus 398 l~~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el 449 (459)
T PRK06698 398 YDIKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLEL 449 (459)
T ss_pred cCcceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHH
Confidence 4689999999999999999999999999998765443445678888887665
No 28
>PLN02645 phosphoglycolate phosphatase
Probab=99.20 E-value=2.2e-11 Score=79.30 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=45.9
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh------hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF------KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~------~~~~~~~~~~~~l 55 (75)
++++++++|+||||+. +||++|+++||++|+|.+|......+ ..++++++++.++
T Consensus 242 ~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l 303 (311)
T PLN02645 242 KFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDF 303 (311)
T ss_pred HcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHH
Confidence 3688999999999997 99999999999999999988655433 2478888887665
No 29
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.20 E-value=1.6e-11 Score=78.59 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=46.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l 55 (75)
++|++|++|+||||+.+|+++|+++||++++|.+++.....+ ..++++++++.++
T Consensus 169 ~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 169 MAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 368899999999999999999999999999999886543332 3678888888776
No 30
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.20 E-value=1.4e-11 Score=75.74 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=42.6
Q ss_pred C-CCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 2 L-GISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 2 l-~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
+ +++|++|+|||||. +|+++|+++||++|++.++.........++++++++.++
T Consensus 165 ~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 165 MPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEEL 220 (224)
T ss_pred hcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHH
Confidence 5 88999999999998 799999999999999987643322223466778877665
No 31
>PRK10444 UMP phosphatase; Provisional
Probab=99.19 E-value=3e-11 Score=76.72 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh----hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~----~~~~~~~~~~~~l 55 (75)
++++|++|+||||+. +|+++|+++|+++++|.+|....+.+ ..++++++++.++
T Consensus 187 ~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 187 MQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 578999999999996 89999999999999999998765444 3578899988776
No 32
>PRK09449 dUMP phosphatase; Provisional
Probab=99.16 E-value=3.7e-11 Score=74.21 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCCC-CCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 1 RLGIS-EKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~-p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
++|+. +++|+|||||. +|+++|++|||++|++.++.........++++++++.++
T Consensus 162 ~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el 218 (224)
T PRK09449 162 QMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSEL 218 (224)
T ss_pred HcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHH
Confidence 36765 47999999998 799999999999999974322111112467788887665
No 33
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=8e-11 Score=86.48 Aligned_cols=61 Identities=33% Similarity=0.592 Sum_probs=51.4
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh--hccceeeCCCCCCCHHHHHH
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPDLSNVRLKDLEL 62 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~ 62 (75)
+++++|++|+||||+..|+++|++|||++|++.++... ..+ ..++++++++.++++..+..
T Consensus 230 ~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~-~~L~~~~a~~vi~~l~el~~~~~~~ 292 (1057)
T PLN02919 230 ILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSE-EILKDAGPSLIRKDIGNISLSDILT 292 (1057)
T ss_pred HcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCH-HHHhhCCCCEEECChHHCCHHHHHh
Confidence 47899999999999999999999999999999987643 333 46788999999998776543
No 34
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.14 E-value=9.6e-11 Score=74.21 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=44.9
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh----hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~----~~~~~~~~~~~~l 55 (75)
++++|++|+||||+. +|+.+|+++||++++|.+|....... ..++++++++.++
T Consensus 191 ~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 191 LGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 678999999999996 89999999999999999987654433 2478888887654
No 35
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.12 E-value=9.2e-11 Score=74.63 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhh----hhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQD----FKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l 55 (75)
+++++|++|+||||+. +|+++|+++||++|+|.+|...... ...++++++++.++
T Consensus 191 ~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 191 ATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred HhCCChhhEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 3678999999999996 9999999999999999988533221 13578888888776
No 36
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.10 E-value=9.3e-11 Score=73.19 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCe-EEEEcCCCCc
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMA-CVITYTSSTA 38 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~-~i~v~~~~~~ 38 (75)
++|++|++|+|||||..|+++|++|||+ +++|.++...
T Consensus 161 ~~~~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~~ 199 (224)
T PRK14988 161 HTGLKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPDSG 199 (224)
T ss_pred HcCCChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 4789999999999999999999999998 4778876543
No 37
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.08 E-value=5.4e-11 Score=72.39 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCcEEEEecCHHhHHHHHHc--CCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRA--GMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~A--G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
|++|+|||||..|+++|++| ||++|++.|+.. .....+++.+.++.++
T Consensus 145 ~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 145 DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDI 194 (197)
T ss_pred CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHH
Confidence 78899999999999999999 999999998864 2333455777776655
No 38
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.08 E-value=1.2e-10 Score=73.10 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEEecC-HHhHHHHHHcCCeEEEEcCCCCch----hhhhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDS-VIGLQAATRAGMACVITYTSSTAE----QDFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs-~~di~aA~~AG~~~i~v~~~~~~~----~~~~~~~~~~~~~~~l 55 (75)
++|++|++|+||||+ ..|+++|+++||++|++..+.... .....++..+.++.++
T Consensus 175 ~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 175 KLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred HcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 368899999999999 599999999999999997654321 1112356666666554
No 39
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.07 E-value=1.4e-10 Score=68.23 Aligned_cols=35 Identities=43% Similarity=0.603 Sum_probs=32.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
+++++|++|+||||+..|+++|+++||++|+|..+
T Consensus 113 ~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 113 RLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 36889999999999999999999999999998754
No 40
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.07 E-value=2.9e-10 Score=71.44 Aligned_cols=57 Identities=37% Similarity=0.476 Sum_probs=45.6
Q ss_pred CCCCCC-CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCH
Q 048682 1 RLGISE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRL 57 (75)
Q Consensus 1 ~l~~~p-~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~ 57 (75)
+||..| +.|++||||+.|++||++|||++|++++..........++.+++++.++.+
T Consensus 163 ~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (222)
T KOG2914|consen 163 RLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKP 220 (222)
T ss_pred hcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCc
Confidence 367777 999999999999999999999999999844333233567788888877754
No 41
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.05 E-value=3.5e-10 Score=70.90 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=39.8
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCch-hhh-hccceeeCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE-QDF-KDAIAIYPDLSN 54 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~-~~~-~~~~~~~~~~~~ 54 (75)
++|++|++|+||||+..|+++|++|||++|++.++.... ... ......+.+|.+
T Consensus 164 ~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 164 QLGSPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred HhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 368999999999999999999999999999987665321 111 111445666654
No 42
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.02 E-value=2.2e-10 Score=68.64 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=30.5
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEc
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITY 33 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~ 33 (75)
+++++|++|+||||+.+|+++|+++||++|+|.
T Consensus 153 ~~~~~~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 153 GLGVSPSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HcCCCHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 368899999999999999999999999999873
No 43
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.99 E-value=3.4e-10 Score=68.16 Aligned_cols=33 Identities=39% Similarity=0.634 Sum_probs=30.8
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEc
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITY 33 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~ 33 (75)
+++++|++|||||||.+|+++|++||+++|++.
T Consensus 154 ~~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 154 LMGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HcCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 468899999999999999999999999999985
No 44
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.97 E-value=5.9e-10 Score=67.14 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCch
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAE 39 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~ 39 (75)
+++++|++|+||||+. .|+++|+++||++|+|.++....
T Consensus 103 ~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 103 EMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred HcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 3678999999999998 79999999999999999887543
No 45
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.96 E-value=5.7e-10 Score=67.85 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=32.9
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
+++|++|+|||||+.|+++|++||+++|++.++..
T Consensus 127 gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 127 VLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred CCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence 68999999999999999999999999999988764
No 46
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.96 E-value=8e-10 Score=67.53 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
++|++|++|+||||+..|+++|+++||++|++.++...
T Consensus 153 ~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~~ 190 (199)
T PRK09456 153 AEGFSAADAVFFDDNADNIEAANALGITSILVTDKQTI 190 (199)
T ss_pred HcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCCccH
Confidence 47899999999999999999999999999999876543
No 47
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.96 E-value=8.9e-10 Score=67.02 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+|++|++|++|||+.+|+++|+++||++|++..+.
T Consensus 161 ~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 161 LGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred hCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 68899999999999999999999999999997643
No 48
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.90 E-value=1.3e-09 Score=65.68 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
++|++|++|+||||+..|+++|+++||++|+|
T Consensus 153 ~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 153 EAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 36899999999999999999999999999875
No 49
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.90 E-value=2.3e-09 Score=66.04 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCch-hhhhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAE-QDFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~-~~~~~~~~~~~~~~~l 55 (75)
++|++|++|+||||+. +|+.+|+++||++|++..+.... .....+++.+.++.++
T Consensus 166 ~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l 222 (229)
T COG1011 166 KLGVPPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAEL 222 (229)
T ss_pred HcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHH
Confidence 4789999999999996 77799999999999997655321 1113456666766555
No 50
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.90 E-value=1.1e-09 Score=65.61 Aligned_cols=32 Identities=47% Similarity=0.761 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
+++++|++|+|||||..|+++|+++||++|+|
T Consensus 154 ~~~~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 154 LLGVSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred HcCCCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 36889999999999999999999999999975
No 51
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.88 E-value=2.2e-09 Score=63.93 Aligned_cols=32 Identities=44% Similarity=0.825 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
+++++|++|+||||+..|+++|+++||++|+|
T Consensus 152 ~~~~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 152 KLGLKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred HcCCCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 36889999999999999999999999999975
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.88 E-value=1.9e-09 Score=64.70 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
++++|++|+||||+.+|+++|+++||+++++.++..
T Consensus 116 ~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~ 151 (161)
T TIGR01261 116 NLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEEL 151 (161)
T ss_pred cCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhc
Confidence 578999999999999999999999999999987654
No 53
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.87 E-value=2e-09 Score=63.06 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
++++|++|++|||+..|+++|+++||++|+|
T Consensus 146 ~~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 146 LGIPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HTSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred cCCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 5789999999999999999999999999986
No 54
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.85 E-value=2e-09 Score=65.99 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
++|++|++|+||||+..|+++|+++||++|++.++.
T Consensus 164 ~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 164 RLGVAPEECVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 468999999999999999999999999999997643
No 55
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.75 E-value=8.7e-09 Score=59.22 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=29.6
Q ss_pred C-CCCCCcEEEEec-CHHhHHHHHHcCCeEEEEc
Q 048682 2 L-GISEKDCLVVED-SVIGLQAATRAGMACVITY 33 (75)
Q Consensus 2 l-~~~p~~~l~igD-s~~di~aA~~AG~~~i~v~ 33 (75)
+ +++|++|+|||| +..|+++|+++|+++|++.
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 5 489999999999 7999999999999999875
No 56
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.75 E-value=5.6e-09 Score=63.66 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=28.3
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEE
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVI 31 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~ 31 (75)
++|++|++|+||||+. +|+++|+++||++|+
T Consensus 172 ~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 172 RAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 3689999999999997 899999999999874
No 57
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.73 E-value=1.2e-08 Score=65.63 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=30.8
Q ss_pred CC-CCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 3 GI-SEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 3 ~~-~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+. +|++|+||||+.+|+++|+++||++|+|.||.
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 45 57999999999999999999999999998873
No 58
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.64 E-value=3.8e-08 Score=64.43 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=40.3
Q ss_pred CCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh---hccceeeCCCCCC
Q 048682 5 SEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF---KDAIAIYPDLSNV 55 (75)
Q Consensus 5 ~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~---~~~~~~~~~~~~l 55 (75)
++++++||||++ +||.+|+++||.+|+|.+|.....+. ..++++++++.++
T Consensus 262 ~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~vv~~l~e~ 316 (321)
T TIGR01456 262 PFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLIVNDVFDA 316 (321)
T ss_pred ChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEEECCHHHH
Confidence 457999999997 99999999999999999874332221 2468888888665
No 59
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2.8e-08 Score=64.08 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=43.3
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh----hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~----~~~~~~~~~~~~l 55 (75)
++.++++|+||||+. +||++|+++||.++.|.+|.+...+. ..++++++++.++
T Consensus 203 ~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~ 261 (269)
T COG0647 203 LGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAEL 261 (269)
T ss_pred hCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHH
Confidence 577889999999996 89999999999999999998755443 2356666666555
No 60
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.63 E-value=1.1e-08 Score=63.35 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCch-hhhhccceeeCCCCCCCHHHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE-QDFKDAIAIYPDLSNVRLKDLELL 63 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~ 63 (75)
++..+++|+|||||.+|+.+|++||+..+ ....... .....+...+++|.++ .+.|+++
T Consensus 156 ~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~ei-~~~l~~~ 215 (219)
T PRK09552 156 LSDTNDFHIVIGDSITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHDV-QTELKHL 215 (219)
T ss_pred hccCCCCEEEEeCCHHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHHH-HHHHHHH
Confidence 46778999999999999999999999333 2211111 1122355667777777 4555443
No 61
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.62 E-value=8.7e-08 Score=56.87 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+++++++|+|||||.+|+.+++++|+. +++.+... .....+++++.+...
T Consensus 88 ~~~~~~~~~~vGDs~~D~~~~~~ag~~-~~v~~~~~--~~~~~a~~i~~~~~~ 137 (154)
T TIGR01670 88 LALAPENVAYIGDDLIDWPVMEKVGLS-VAVADAHP--LLIPRADYVTRIAGG 137 (154)
T ss_pred cCCCHHHEEEECCCHHHHHHHHHCCCe-EecCCcCH--HHHHhCCEEecCCCC
Confidence 678999999999999999999999997 77766542 223457788877653
No 62
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.60 E-value=4.6e-08 Score=61.55 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCCCCCcE-EEEecCH-HhHHHHHHcCCeEEEEcCC
Q 048682 2 LGISEKDC-LVVEDSV-IGLQAATRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~-l~igDs~-~di~aA~~AG~~~i~v~~~ 35 (75)
++++++++ +||||+. +||++|+++|+++|+|.+|
T Consensus 201 ~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 201 LQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred hCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 56778887 9999998 8999999999999999764
No 63
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.58 E-value=7.9e-08 Score=64.02 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
++++|++|+||||+.+|+++|+++||++|++...
T Consensus 117 l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 117 GAIDLANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred cCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 5788999999999999999999999999999543
No 64
>PLN02954 phosphoserine phosphatase
Probab=98.57 E-value=9.3e-08 Score=59.04 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchh-hhhccceeeCCCCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ-DFKDAIAIYPDLSNV 55 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l 55 (75)
.++|+|||||.+|+++|+++|+.+++..++..... ....++++++++.++
T Consensus 169 ~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 169 YKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred CCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 46899999999999999999988765544332222 224578888887665
No 65
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.55 E-value=4e-08 Score=59.39 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYT 34 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~ 34 (75)
+|+++|++|+||||.. +|+.+|+.+||+||.|..
T Consensus 105 ~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 105 EMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred HcCCChhHEEEEcchhhhhhhcccccCcEEEEEEE
Confidence 4789999999999996 899999999999999853
No 66
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.53 E-value=5e-08 Score=59.47 Aligned_cols=60 Identities=8% Similarity=-0.081 Sum_probs=39.6
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccce-eeCCCCCCCHHHHHHHHHH
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIA-IYPDLSNVRLKDLELLLQN 66 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~ 66 (75)
+..+++|+|||||.+|++++++||+.+. +. .........+++ +++++.++ ++.+....++
T Consensus 141 ~~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~--~~~~~~~~~~~~~~~~~~~el-~~~l~~~~~~ 201 (205)
T PRK13582 141 KSLGYRVIAAGDSYNDTTMLGEADAGIL-FR--PPANVIAEFPQFPAVHTYDEL-LAAIDKASAR 201 (205)
T ss_pred HHhCCeEEEEeCCHHHHHHHHhCCCCEE-EC--CCHHHHHhCCcccccCCHHHH-HHHHHHHHhh
Confidence 3456899999999999999999998543 32 221111123343 78888877 5666655543
No 67
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.50 E-value=1.7e-07 Score=59.49 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=28.7
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
-|+||||+.+|+++|++||+++|++.|++..
T Consensus 186 i~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 186 IRIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred CeEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 4999999999999999999999999998764
No 68
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.50 E-value=1.7e-07 Score=59.42 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=28.1
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
|+||||+.+|+.+|++||+++|++.|++..
T Consensus 187 ~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 899999999999999999999999988754
No 69
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.49 E-value=2e-07 Score=58.65 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCCC-CCcEEEEecC-HHhHHHHHHcCCeEEEEcC
Q 048682 2 LGIS-EKDCLVVEDS-VIGLQAATRAGMACVITYT 34 (75)
Q Consensus 2 l~~~-p~~~l~igDs-~~di~aA~~AG~~~i~v~~ 34 (75)
++.. +++|+||||+ .+|+++|+++||++++|.+
T Consensus 208 ~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 208 CSNIPKNRMLMVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred cCCCCcccEEEECCCcHHHHHHHHHCCCeEEEEeC
Confidence 4554 5789999999 6999999999999999853
No 70
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.47 E-value=3.9e-07 Score=55.44 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP 50 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~ 50 (75)
+|++|++|+||||+.+|+.+++++|+.+ ++.+. .......++++++
T Consensus 108 ~gl~~~ev~~VGDs~~D~~~a~~aG~~~-~v~~~--~~~~~~~a~~v~~ 153 (183)
T PRK09484 108 LAIAPEQVAYIGDDLIDWPVMEKVGLSV-AVADA--HPLLLPRADYVTR 153 (183)
T ss_pred hCCCHHHEEEECCCHHHHHHHHHCCCeE-ecCCh--hHHHHHhCCEEec
Confidence 6889999999999999999999999984 45321 1111245677775
No 71
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.46 E-value=2.5e-07 Score=56.94 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDL 52 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~ 52 (75)
++++|++|+|||||.+|+++|++||+.++ +. +. ......+++++.+.
T Consensus 164 ~~~~~~~~i~iGDs~~Di~aa~~ag~~i~-~~-~~--~~~~~~a~~~i~~~ 210 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLSMIKAAGLGIA-FN-AK--PKLQQKADICINKK 210 (219)
T ss_pred cCCCHHHEEEEECCHHHHHHHHhCCCeEE-eC-CC--HHHHHhchhccCCC
Confidence 57889999999999999999999999853 32 21 11224566766644
No 72
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.43 E-value=1.1e-07 Score=57.18 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCCCcEEEEecCH--------HhHHHHHHcCCeEEE
Q 048682 4 ISEKDCLVVEDSV--------IGLQAATRAGMACVI 31 (75)
Q Consensus 4 ~~p~~~l~igDs~--------~di~aA~~AG~~~i~ 31 (75)
++|++|+||||+. +|+++|++||+++++
T Consensus 125 ~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 125 IKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred CCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 8899999999996 699999999999863
No 73
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.41 E-value=2e-07 Score=59.21 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCC
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~ 37 (75)
++++.|++|++|||+. +|+++|+++||.++.|.....
T Consensus 180 ~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 180 RLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred HhCCChHHeEEecCccccccHhHHHcCCEEEEEccccc
Confidence 4689999999999996 899999999999999876544
No 74
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.38 E-value=3.1e-07 Score=55.55 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+++++++|+|||||.+|+++|+.||+.++..+.+.
T Consensus 159 ~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 159 LNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred hCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 57789999999999999999999999877655443
No 75
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.31 E-value=5.8e-07 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=23.0
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAG 26 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG 26 (75)
+++++| +|+|||||..|+++|++||
T Consensus 130 ~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 130 SLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 368888 9999999999999999997
No 76
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.1e-07 Score=59.31 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhh
Q 048682 1 RLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQD 41 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~ 41 (75)
+++++|++|+||||+. +||.-|++.|++++++.+|-+..++
T Consensus 236 ~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led 277 (306)
T KOG2882|consen 236 KFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLED 277 (306)
T ss_pred HcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHH
Confidence 3578999999999996 8999999999999999988765443
No 77
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.28 E-value=9e-07 Score=55.92 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=37.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
++|+++++|++|||+.+|+.+++.||+. |++.++ .......++++.++-.+=
T Consensus 210 ~~gi~~~e~i~~GD~~NDi~m~~~ag~~-vamgna--~~~lk~~Ad~v~~~n~~d 261 (272)
T PRK10530 210 AQGWSMKNVVAFGDNFNDISMLEAAGLG-VAMGNA--DDAVKARADLVIGDNTTP 261 (272)
T ss_pred HcCCCHHHeEEeCCChhhHHHHHhcCce-EEecCc--hHHHHHhCCEEEecCCCC
Confidence 3689999999999999999999999973 334332 222234678887766553
No 78
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.25 E-value=3.7e-07 Score=53.81 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+++++|++|||||||..|+++|+++|+..-
T Consensus 110 ~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 110 LLGRDLSNVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred HcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence 368899999999999999999999998754
No 79
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.19 E-value=1.2e-06 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHc
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~A 25 (75)
+|++|++|+||||+.+|+++|++|
T Consensus 174 ~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 174 LGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred hCcCcccEEEEeCCHHHHHHHHhC
Confidence 688999999999999999999986
No 80
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.17 E-value=4.3e-06 Score=55.15 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP 50 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~ 50 (75)
++|+++++|++|||+.+|+.+++.||+.+++ +.. ..-...++..++
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~--nAk--p~Vk~~Ad~~i~ 304 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY--HAK--PKVNEQAQVTIR 304 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe--CCC--HHHHhhCCEEec
Confidence 3689999999999999999999999997664 222 112245677775
No 81
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.15 E-value=1.5e-06 Score=52.60 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 53 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~ 53 (75)
++++++++|++|||+.+|+.+++.+|+..+.- +.. ..-...++++..+-.
T Consensus 93 ~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~-nA~--~~lk~~A~~I~~~~~ 142 (169)
T TIGR02726 93 EMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG-DAV--ADVKEAAAYVTTARG 142 (169)
T ss_pred HcCcCHHHEEEECCCHHHHHHHHHCCCeEECc-Cch--HHHHHhCCEEcCCCC
Confidence 36889999999999999999999999986633 222 112244566655433
No 82
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.10 E-value=3.2e-06 Score=47.25 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=27.7
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
++.+++++++|||+.+|+++++++|+++++|
T Consensus 109 ~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 109 LGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred cCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 4566899999999999999999999999874
No 83
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.09 E-value=9.9e-07 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCC
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGM 27 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~ 27 (75)
+..+++|+||||+.+|+.+|+.||+
T Consensus 153 ~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 153 SEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred hhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 3467889999999999999999998
No 84
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.07 E-value=1.9e-06 Score=54.19 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=41.2
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCchhhh----hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~~~~----~~~~~~~~~~~~l 55 (75)
+|++|++|+||||-. .|+-.|.+.||+.|.|.+|.....+. ..++...++|.+-
T Consensus 194 ~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~A 252 (262)
T KOG3040|consen 194 LGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADA 252 (262)
T ss_pred cCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHH
Confidence 588999999999986 69999999999999999887543211 2455566666443
No 85
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.04 E-value=1.8e-06 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHc
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~A 25 (75)
++|++|++|+||||+..|+++|+++
T Consensus 151 ~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 151 TVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHCCCHHHeEeEecChhhHHHHhcC
Confidence 3689999999999999999999875
No 86
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.91 E-value=1.4e-05 Score=49.00 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh-hccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF-KDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~-~~~~~~~~~~~~l 55 (75)
+++++++.+||||+.+|+++|.++|++.+.+.++....... ...+..++++.++
T Consensus 118 ~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (181)
T COG0241 118 YNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEF 172 (181)
T ss_pred hCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHH
Confidence 46889999999999999999999999988776655332111 1234455555444
No 87
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.85 E-value=2.6e-05 Score=49.21 Aligned_cols=55 Identities=18% Similarity=-0.033 Sum_probs=41.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHc-------CCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRA-------GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLE 61 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~A-------G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 61 (75)
++..+.+++||||+.+|+.+.+.+ |..+|.+.++. ....++++++++.++ ...|.
T Consensus 179 ~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~----~~~~A~~~~~~~~~v-~~~L~ 240 (244)
T TIGR00685 179 QPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS----KKTVAKFHLTGPQQV-LEFLG 240 (244)
T ss_pred cccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC----cCCCceEeCCCHHHH-HHHHH
Confidence 466788999999999999999999 77778776442 123477888887775 44443
No 88
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.83 E-value=1.4e-05 Score=48.50 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAG 26 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG 26 (75)
|++++++|+||||+.+|+.|+++||
T Consensus 191 l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 191 LQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred HhcCCCEEEEEccCHHHHHHHHhCc
Confidence 5678899999999999999999997
No 89
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.81 E-value=3e-05 Score=47.92 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+|++++++++|||+.+|+.+.+.+|+.++ +.+... .-...++++..+..+
T Consensus 169 ~~i~~~~~i~~GD~~NDi~m~~~ag~~va-m~Na~~--~vk~~a~~v~~~n~~ 218 (230)
T PRK01158 169 MGIDPEEVAAIGDSENDLEMFEVAGFGVA-VANADE--ELKEAADYVTEKSYG 218 (230)
T ss_pred hCCCHHHEEEECCchhhHHHHHhcCceEE-ecCccH--HHHHhcceEecCCCc
Confidence 68899999999999999999999998754 444321 122456777665544
No 90
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.77 E-value=6e-05 Score=48.15 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.8
Q ss_pred CCCCC-CcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 2 LGISE-KDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 2 l~~~p-~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
+|+++ +++++|||+.+|+.+.+.+|+.+++-
T Consensus 202 ~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~ 233 (273)
T PRK00192 202 YRRQDGVETIALGDSPNDLPMLEAADIAVVVP 233 (273)
T ss_pred HhccCCceEEEEcCChhhHHHHHhCCeeEEeC
Confidence 57899 99999999999999999999876643
No 91
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.76 E-value=2.2e-05 Score=48.32 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+|++++++++|||+.+|+.+.+.+|..+ ++.+.. ..-...++++..+..+
T Consensus 161 ~~i~~~~~i~~GD~~NDi~m~~~ag~~v-am~Na~--~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 161 LGIKPGETLVCGDSENDIDLFEVPGFGV-AVANAQ--PELKEWADYVTESPYG 210 (225)
T ss_pred hCCCHHHEEEECCCHhhHHHHHhcCceE-EcCChh--HHHHHhcCeecCCCCC
Confidence 6889999999999999999999999964 454432 1222456666655443
No 92
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.76 E-value=4.6e-05 Score=48.04 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+++++++|++|||+.+|+.+.+.++..+|++.+..
T Consensus 179 ~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~ 213 (249)
T TIGR01485 179 LAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQ 213 (249)
T ss_pred cCCCccCEEEEECChhHHHHHHccCCcEEEECCCH
Confidence 68899999999999999999999888888887654
No 93
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.75 E-value=5.4e-05 Score=52.90 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 51 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~ 51 (75)
..+++|+||||+.+|+.++++|| +++.++.........++.++.+
T Consensus 445 ~~~~~v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~ 489 (556)
T TIGR01525 445 EEGGVVAMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLN 489 (556)
T ss_pred HcCCEEEEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeC
Confidence 35678999999999999999999 5666664332233567887764
No 94
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.69 E-value=4.3e-05 Score=53.21 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC-Cchhhhhccceee--CCCCCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSS-TAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~-~~~~~~~~~~~~~--~~~~~l 55 (75)
...++++||||+.+|+.++++||+ ++.+++ ........++.++ +++.++
T Consensus 423 ~~~~~v~~vGDg~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l 474 (536)
T TIGR01512 423 EKYGPVAMVGDGINDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRL 474 (536)
T ss_pred hcCCEEEEEeCCHHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHH
Confidence 345789999999999999999995 565663 2222334677777 777776
No 95
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.68 E-value=5.6e-05 Score=46.65 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
++|+++++|++|||+.+|+.+-+.||..++
T Consensus 190 ~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 190 TYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred HhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 368999999999999999999999997653
No 96
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.68 E-value=7.2e-05 Score=47.15 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+++++++|++|||+.+|+.+.+.+|+.+++ .+. .......++++..+..+
T Consensus 200 ~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~-~na--~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 200 LGISLEDVIAFGDGMNDIEMLEAAGYGVAM-GNA--DEELKALADYVTDSNNE 249 (256)
T ss_pred cCCCHHHEEEeCCcHHhHHHHHhCCceeEe-cCc--hHHHHHhCCEEecCCCC
Confidence 688999999999999999999999987543 332 22222456777665443
No 97
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.67 E-value=6.5e-05 Score=46.28 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 53 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~ 53 (75)
++++++++++||||.+|+.+.+.+|+.+. +.++. ..-...++++..+-.
T Consensus 159 ~~i~~~~~i~iGDs~ND~~ml~~ag~~va-m~na~--~~~k~~A~~v~~~~~ 207 (215)
T TIGR01487 159 LGIKPEEVAAIGDSENDIDLFRVVGFKVA-VANAD--DQLKEIADYVTSNPY 207 (215)
T ss_pred hCCCHHHEEEECCCHHHHHHHHhCCCeEE-cCCcc--HHHHHhCCEEcCCCC
Confidence 57889999999999999999999998755 43332 122234666665433
No 98
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.58 E-value=4.6e-05 Score=46.28 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=27.7
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEc
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITY 33 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~ 33 (75)
.++++++|+++|||.+|+.+++.+|..++..+
T Consensus 167 ~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 167 EQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred cCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 46778999999999999999999998876443
No 99
>PTZ00445 p36-lilke protein; Provisional
Probab=97.56 E-value=7.1e-05 Score=47.05 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
+.|+.|++|++|.|+...+++|++.|+.++.+..+
T Consensus 173 ~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 173 DFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred HcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 36899999999999999999999999999988654
No 100
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.55 E-value=0.00013 Score=46.12 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCC-CCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~-p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
.|+. |.+|++|.||.+.|++|++.||++|.+....
T Consensus 173 agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 173 AGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred hCCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 3666 9999999999999999999999999886543
No 101
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.55 E-value=8.7e-05 Score=52.05 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=34.1
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeC--CCCCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP--DLSNV 55 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l 55 (75)
.++++|+||||+.+|+.++++||+ ++.++.........++.++. ++..+
T Consensus 464 ~~~~~v~~VGDg~nD~~al~~A~v---gia~g~g~~~a~~~Advvl~~~~l~~l 514 (562)
T TIGR01511 464 EKGRVVAMVGDGINDAPALAQADV---GIAIGAGTDVAIEAADVVLMRNDLNDV 514 (562)
T ss_pred HcCCEEEEEeCCCccHHHHhhCCE---EEEeCCcCHHHHhhCCEEEeCCCHHHH
Confidence 356789999999999999999996 44444433323355777773 55444
No 102
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.48 E-value=0.0002 Score=52.24 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccce--eeCCCCCC
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 55 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~--~~~~~~~l 55 (75)
+..+++++||||+.+|+.++++||+ ++.++.........++. ..+++..+
T Consensus 709 ~~~~~~v~~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i 760 (834)
T PRK10671 709 QSQGRQVAMVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGV 760 (834)
T ss_pred hhcCCEEEEEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHH
Confidence 4457889999999999999999998 34444433333344444 34566555
No 103
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.44 E-value=0.00017 Score=48.16 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEecCH-HhHHHHH-HcCCeEEEEcCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAAT-RAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~-~AG~~~i~v~~~ 35 (75)
+++.+++++||||.+ .|+.+|+ .+||++|+|...
T Consensus 290 l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 290 LKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred HCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 578899999999996 8999998 999999998653
No 104
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.41 E-value=7.4e-05 Score=44.57 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.0
Q ss_pred CCcEEEEecCHHhHHHHHHcCCe
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~ 28 (75)
+++|+||||+.+|+++|++|++-
T Consensus 162 ~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 162 YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CceEEEECCCcchhchHhcCCcc
Confidence 78999999999999999999753
No 105
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.41 E-value=0.00024 Score=44.97 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+|++++++++|||+.||+.+-+.||...+ +.+.. ..-...++++..+-.+
T Consensus 208 ~gi~~~~v~afGD~~NDi~Ml~~ag~~vA-m~NA~--~~vK~~A~~vt~~n~~ 257 (270)
T PRK10513 208 LGIKPEEVMAIGDQENDIAMIEYAGVGVA-MGNAI--PSVKEVAQFVTKSNLE 257 (270)
T ss_pred hCCCHHHEEEECCchhhHHHHHhCCceEE-ecCcc--HHHHHhcCeeccCCCc
Confidence 68999999999999999999999998544 44432 2223457777766544
No 106
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=97.38 E-value=0.00026 Score=43.01 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCC
Q 048682 4 ISEKDCLVVEDSV-IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 4 ~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~ 36 (75)
..|++++||||.. +||.+|...|+.+|++..|-
T Consensus 134 ~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 134 TSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred CCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 3699999999996 89999999999999998763
No 107
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.22 E-value=0.00024 Score=43.31 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
++++++++++|||+.+|+.+.+.+|+..+
T Consensus 175 ~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 175 LNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred hCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 57788999999999999999999998754
No 108
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.19 E-value=0.00021 Score=42.33 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHc
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~A 25 (75)
+++++++|++||||.+|+.+++.|
T Consensus 154 ~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCCHHHHHHHhcC
Confidence 467789999999999999998764
No 109
>PRK10976 putative hydrolase; Provisional
Probab=97.15 E-value=0.00027 Score=44.71 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=29.0
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
++|++++++++|||+.||+.+-+.||.. |++.+.
T Consensus 201 ~lgi~~~~viafGD~~NDi~Ml~~ag~~-vAm~NA 234 (266)
T PRK10976 201 KLGYSLKDCIAFGDGMNDAEMLSMAGKG-CIMGNA 234 (266)
T ss_pred HcCCCHHHeEEEcCCcccHHHHHHcCCC-eeecCC
Confidence 3789999999999999999999999985 445444
No 110
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.15 E-value=0.00023 Score=44.43 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~ 34 (75)
+|+++++|++|||+.+|+.+.+.+|... ++.+
T Consensus 171 ~g~~~~~~i~~GD~~nD~~ml~~~~~~i-av~n 202 (236)
T TIGR02471 171 WGLPLEQILVAGDSGNDEEMLRGLTLGV-VVGN 202 (236)
T ss_pred hCCCHHHEEEEcCCccHHHHHcCCCcEE-EEcC
Confidence 6788999999999999999999998654 4544
No 111
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.09 E-value=0.0012 Score=40.40 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
+|++++++++|||+.+|+.+-+.+|...+ +.+.. ..-...++++..+..+
T Consensus 198 ~~i~~~~~~~~GD~~ND~~Ml~~~~~~~a-m~na~--~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 198 LGISPEDIIAFGDSENDIEMLELAGYSVA-MGNAT--PELKKAADYITPSNND 247 (254)
T ss_dssp HTTSGGGEEEEESSGGGHHHHHHSSEEEE-ETTS---HHHHHHSSEEESSGTC
T ss_pred cccccceeEEeecccccHhHHhhcCeEEE-EcCCC--HHHHHhCCEEecCCCC
Confidence 57899999999999999999999998744 54432 2223456777766554
No 112
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.02 E-value=0.00092 Score=41.45 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=24.4
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~ 34 (75)
.+|++||||.+|+.+++.||+++++...
T Consensus 145 ~~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 145 YRVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred CCEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 3799999999999999999999876543
No 113
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=97.02 E-value=0.0014 Score=40.79 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 53 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~ 53 (75)
.|++|.+.+++.|.+.-+.||+.+||.++.+..+............++.+|.
T Consensus 173 iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 173 IGLPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred cCCCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 4789999999999999999999999999877654322111122345566665
No 114
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.96 E-value=0.0013 Score=41.28 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+.++++|++|||+.+|+.+-+.+|+.++
T Consensus 196 ~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 196 RPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred ccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 4467799999999999999999999764
No 115
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.88 E-value=0.00076 Score=38.83 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred CC--CCCCcEEEEecCHHhHHHHHH
Q 048682 2 LG--ISEKDCLVVEDSVIGLQAATR 24 (75)
Q Consensus 2 l~--~~p~~~l~igDs~~di~aA~~ 24 (75)
+| ++|++|+||||+..++...+.
T Consensus 102 lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 102 LNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred hcCCCCcceEEEECCCHhHHHHHHh
Confidence 57 899999999999999877653
No 116
>PLN02887 hydrolase family protein
Probab=96.87 E-value=0.002 Score=45.68 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
++|++++++++|||+.||+.+=+.||.. |++.++. ..-...++++..+-.+
T Consensus 518 ~lGI~~eeviAFGDs~NDIeMLe~AG~g-VAMgNA~--eeVK~~Ad~VT~sNdE 568 (580)
T PLN02887 518 HLGVSPDEIMAIGDGENDIEMLQLASLG-VALSNGA--EKTKAVADVIGVSNDE 568 (580)
T ss_pred HcCCCHHHEEEEecchhhHHHHHHCCCE-EEeCCCC--HHHHHhCCEEeCCCCc
Confidence 3689999999999999999999999985 4454443 2223456777665443
No 117
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.78 E-value=0.0013 Score=41.66 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=27.5
Q ss_pred CCCC--CCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 2 LGIS--EKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~--p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
++++ ++++++|||+.+|+.+-+.+|..++ +.+.
T Consensus 188 ~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~va-m~Na 222 (256)
T TIGR01486 188 YNQPGGAIKVVGLGDSPNDLPLLEVVDLAVV-VPGP 222 (256)
T ss_pred HhhcCCCceEEEEcCCHhhHHHHHHCCEEEE-eCCC
Confidence 4667 8999999999999999999998755 4443
No 118
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.73 E-value=0.0014 Score=42.96 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=25.4
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCe
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~ 28 (75)
++|+++++|+||||++.|+.++++++-.
T Consensus 98 ~l~i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 98 KLNLGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred HhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence 3789999999999999999999998864
No 119
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.73 E-value=0.0011 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
+|++++++++|||+.||+.+=+.+|.. |++.+.
T Consensus 200 ~gi~~~~v~afGD~~NDi~Ml~~ag~~-vAm~Na 232 (272)
T PRK15126 200 LGLSLADCMAFGDAMNDREMLGSVGRG-FIMGNA 232 (272)
T ss_pred hCCCHHHeEEecCCHHHHHHHHHcCCc-eeccCC
Confidence 689999999999999999999999974 445443
No 120
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.67 E-value=0.00054 Score=41.03 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=28.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEc
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITY 33 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~ 33 (75)
+|.++++||+|||++.++.++.++|+++....
T Consensus 108 l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 108 VGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred cCCChhhEEEEeCChhhhccCccCEeecCCCC
Confidence 57889999999999999999999999877554
No 121
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.62 E-value=0.0082 Score=38.55 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHc---CCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHh
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRA---GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQ 68 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~A---G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 68 (75)
+++..+++++|||..+|+.+=+.+ +-.+|.+.... ..+.+.++++.++ ...|..+....+
T Consensus 186 ~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~------~~A~~~l~~~~~v-~~~L~~l~~~~~ 248 (266)
T PRK10187 186 APFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA------TQASWRLAGVPDV-WSWLEMITTAQQ 248 (266)
T ss_pred cCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC------CcCeEeCCCHHHH-HHHHHHHHHhhh
Confidence 567788999999999998887766 34556664432 3366788888877 566666554433
No 122
>PRK08238 hypothetical protein; Validated
Probab=96.56 E-value=0.0047 Score=42.96 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.0
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
.++++|+|||.+|+.+++.|| ..++|..+.
T Consensus 139 ~~~~~yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 139 ERGFDYAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred ccCeeEecCCHHHHHHHHhCC-CeEEECCCH
Confidence 356999999999999999999 667776544
No 123
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.51 E-value=0.0025 Score=40.66 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=25.8
Q ss_pred CCC---CCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 2 LGI---SEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 2 l~~---~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+|+ ++++++.|||+.||+.+=+.||..++
T Consensus 199 lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvA 230 (271)
T PRK03669 199 YQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVV 230 (271)
T ss_pred HHhhcCCCceEEEEcCCHHHHHHHHhCCEEEE
Confidence 567 89999999999999999999997544
No 124
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.41 E-value=0.0016 Score=41.20 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
+|++++++++|||+.+|+.+=+.+|..+++
T Consensus 201 lgi~~~~v~afGD~~ND~~Ml~~ag~gvam 230 (264)
T COG0561 201 LGIKLEEVIAFGDSTNDIEMLEVAGLGVAM 230 (264)
T ss_pred hCCCHHHeEEeCCccccHHHHHhcCeeeec
Confidence 688999999999999999999999987553
No 125
>PLN02382 probable sucrose-phosphatase
Probab=96.30 E-value=0.0065 Score=41.44 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
|++++++++||||.||++.=..+|...|++.+..
T Consensus 191 gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 191 GKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred CCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCc
Confidence 8899999999999999999999997677776554
No 126
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.24 E-value=0.0031 Score=41.13 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.1
Q ss_pred CCCCcEEEEecCHHhHHHHHHc
Q 048682 4 ISEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~A 25 (75)
.++++||+||||.+|+.+|...
T Consensus 209 ~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 209 KDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred CCcceEEEECcChhhhhHhcCC
Confidence 6789999999999999998766
No 127
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.18 E-value=0.0024 Score=44.89 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCe
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~ 28 (75)
++++++|+||||+..|+++|++||.+
T Consensus 281 ~Id~~~S~~VGDaagr~~~g~~ag~~ 306 (526)
T TIGR01663 281 EIQEDDCFFVGDAAGRPANGKAAGKK 306 (526)
T ss_pred CCCHHHeEEeCCcccchHHHHhcCCC
Confidence 58899999999999999999988864
No 128
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.85 E-value=0.039 Score=40.25 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=31.2
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
++.++||||+.+|..+.+.|+ |++..+.........++.++ +++..+
T Consensus 628 ~~~v~mvGDgiNDapAl~~A~---vgia~g~~~~~a~~~adivl~~~~l~~l 676 (741)
T PRK11033 628 HAPLAMVGDGINDAPAMKAAS---IGIAMGSGTDVALETADAALTHNRLRGL 676 (741)
T ss_pred CCCEEEEECCHHhHHHHHhCC---eeEEecCCCHHHHHhCCEEEecCCHHHH
Confidence 467999999999999999999 44444443333334455544 445444
No 129
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.79 E-value=0.009 Score=35.34 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=37.3
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
-+.|+||||..+|+.+-++|-+-.+-+....-....+..+|.++.+..++
T Consensus 93 ~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ 142 (152)
T COG4087 93 YEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEI 142 (152)
T ss_pred CcEEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHH
Confidence 37899999999999999999988776655433333345678888776655
No 130
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.48 E-value=0.031 Score=41.41 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=33.1
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCC-chhhhhccceee--CCCCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSST-AEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~-~~~~~~~~~~~~--~~~~~l 55 (75)
.+.+.|+||+.+|+.|.++|++ +|..+.. ..-....+|.++ +++..+
T Consensus 617 g~~v~mvGDGvND~pAl~~AdV---Gia~g~~g~~va~~aaDivl~dd~~~~i 666 (884)
T TIGR01522 617 GDVVAMTGDGVNDAPALKLADI---GVAMGQTGTDVAKEAADMILTDDDFATI 666 (884)
T ss_pred CCEEEEECCCcccHHHHHhCCe---eEecCCCcCHHHHHhcCEEEcCCCHHHH
Confidence 4678999999999999999994 5555532 222224578887 556665
No 131
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=95.42 E-value=0.013 Score=36.43 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.1
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~ 34 (75)
-|..|||.+||.||+.||++.|-+..
T Consensus 187 ~IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 187 RIHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred eEEecCCchhhhHHHhcCccceeEEe
Confidence 57889999999999999999987754
No 132
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.41 E-value=0.012 Score=37.44 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+++++++++++|||-+|+.+= ..+.+.|.|.+..
T Consensus 177 ~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~ 210 (247)
T PF05116_consen 177 WGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQ 210 (247)
T ss_dssp HT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-
T ss_pred hCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCC
Confidence 578899999999999999877 7888889887644
No 133
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.36 E-value=0.024 Score=33.92 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.5
Q ss_pred CCCCcEEEEecC-----------HHhHHHHHHcCCeEE
Q 048682 4 ISEKDCLVVEDS-----------VIGLQAATRAGMACV 30 (75)
Q Consensus 4 ~~p~~~l~igDs-----------~~di~aA~~AG~~~i 30 (75)
++.++++||||+ .+|.+-|.+.|++..
T Consensus 116 id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 116 IDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred ccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 578999999996 689999999999743
No 134
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.96 E-value=0.026 Score=35.27 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=27.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
+|+++++++++|||.+|+-.=..||.+.+.
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 588899999999999999999999998663
No 135
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=94.42 E-value=0.05 Score=40.54 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCC--CCCC
Q 048682 5 SEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD--LSNV 55 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~--~~~l 55 (75)
..+.+.|+||+.+|+.|-+.|++. |++ +.........+++++.+ |..+
T Consensus 629 ~g~~va~iGDG~ND~~alk~AdVG-ia~--g~g~~~ak~aAD~vl~dd~f~~i 678 (917)
T TIGR01116 629 QGEIVAMTGDGVNDAPALKKADIG-IAM--GSGTEVAKEASDMVLADDNFATI 678 (917)
T ss_pred cCCeEEEecCCcchHHHHHhCCee-EEC--CCCcHHHHHhcCeEEccCCHHHH
Confidence 346688999999999999999983 333 32222223457888766 5554
No 136
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.01 E-value=0.088 Score=32.06 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCCCcEEEEecCH-HhHHHHHHcCCeEEEEcCCCCc
Q 048682 4 ISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 4 ~~p~~~l~igDs~-~di~aA~~AG~~~i~v~~~~~~ 38 (75)
..+++.+||||.. +||..|..-|--.|++..+...
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRA 172 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEecccccc
Confidence 4688999999996 8999999999999998776543
No 137
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.70 E-value=0.09 Score=38.17 Aligned_cols=53 Identities=13% Similarity=-0.078 Sum_probs=36.8
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcC--CeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHH
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAG--MACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLEL 62 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG--~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 62 (75)
+++++.+++|||+.+|+.+-+.++ ..+|.+... ...+.+++++..++ ...|..
T Consensus 668 ~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~------~s~A~~~l~~~~eV-~~~L~~ 722 (726)
T PRK14501 668 AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG------ESRARYRLPSQREV-RELLRR 722 (726)
T ss_pred cCCCCEEEEECCCCChHHHHHhcccCceEEEECCC------CCcceEeCCCHHHH-HHHHHH
Confidence 457889999999999999999874 344555332 23467888887664 444444
No 138
>PLN02423 phosphomannomutase
Probab=92.87 E-value=0.099 Score=33.17 Aligned_cols=32 Identities=3% Similarity=-0.151 Sum_probs=28.6
Q ss_pred CCCcEEEEec----CHHhHHHHHHcCCeEEEEcCCC
Q 048682 5 SEKDCLVVED----SVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 5 ~p~~~l~igD----s~~di~aA~~AG~~~i~v~~~~ 36 (75)
+++++++||| ..||++.-+.-|+.++.|.++.
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~ 234 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPD 234 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHH
Confidence 7899999999 7999999999999999987653
No 139
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.40 E-value=0.27 Score=36.72 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=37.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcC-------------CeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAG-------------MACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 64 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG-------------~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 64 (75)
+|..++.+++|||..+|..+=+.++ ..+|-|..+ ...+.+.+++..++ ...|+.+.
T Consensus 777 ~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~------~S~A~y~L~d~~eV-~~lL~~L~ 845 (854)
T PLN02205 777 RGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK------PSKAKYYLDDTAEI-VRLMQGLA 845 (854)
T ss_pred cCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECCC------CccCeEecCCHHHH-HHHHHHHH
Confidence 4778899999999999988877665 233444221 23456778887776 55555433
No 140
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=92.12 E-value=0.22 Score=34.68 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEecCH-HhHHHHHHc-CCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSV-IGLQAATRA-GMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~-~di~aA~~A-G~~~i~v~~~~ 36 (75)
+|..-.+++||||+. .||...+.. |++|++|-..-
T Consensus 291 l~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL 327 (448)
T PF05761_consen 291 LGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL 327 (448)
T ss_dssp CT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred HccCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence 456678999999997 799888887 99999996543
No 141
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=91.80 E-value=0.32 Score=29.58 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
.|++.++.++|.|-...++...+.|+.+|.++.|.+.
T Consensus 120 tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp H---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--H
T ss_pred cCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCH
Confidence 3788999999999999999999999999999887543
No 142
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=0.21 Score=30.82 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEEecCH-HhHHHHHHcCCeEEEEcCCCCch
Q 048682 9 CLVVEDSV-IGLQAATRAGMACVITYTSSTAE 39 (75)
Q Consensus 9 ~l~igDs~-~di~aA~~AG~~~i~v~~~~~~~ 39 (75)
-+++||+. +-++.|+++|++++.+.+++...
T Consensus 136 dlf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 136 DLFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred CccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 36899995 88999999999999998887643
No 143
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=91.57 E-value=0.13 Score=31.19 Aligned_cols=43 Identities=9% Similarity=0.255 Sum_probs=31.0
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
++|+|++.-+..+..+|+++|.+..++..... ....+.+..|+
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei 181 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEI 181 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSH
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHH
Confidence 79999999999999999999999877644222 45678888887
No 144
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=91.53 E-value=0.4 Score=30.91 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchh-h-hhccceeeCCCCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ-D-FKDAIAIYPDLSNV 55 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~l 55 (75)
+|.++.+.+++-|-+.-..+|+.||+.+..+..+....- + ......++.+|..+
T Consensus 193 Ig~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 193 IGKSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred hCCChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 578899999999999999999999999987766543221 1 11123456666544
No 145
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=0.099 Score=32.72 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGM 27 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~ 27 (75)
-+++..+|+|||.+|+.||+..-.
T Consensus 157 e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 157 EPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred cCCceEEEecCCcccccHhhhhhh
Confidence 356788999999999999998764
No 146
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=91.27 E-value=0.89 Score=28.56 Aligned_cols=26 Identities=4% Similarity=-0.080 Sum_probs=20.3
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGM 27 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~ 27 (75)
++++|++|++|||+..|++.-...|.
T Consensus 91 ~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 91 FDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred ccCCCceEEEeCCcccchhhhcCCCc
Confidence 45678999999999988887755443
No 147
>PLN02580 trehalose-phosphatase
Probab=90.45 E-value=0.81 Score=31.34 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=33.4
Q ss_pred EEEecCHHhHHHHHH-----cCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHH
Q 048682 10 LVVEDSVIGLQAATR-----AGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQN 66 (75)
Q Consensus 10 l~igDs~~di~aA~~-----AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 66 (75)
++|||..+|..+=+. .|+ .|.|..+. ....+.+.+++..++ .+.|..+...
T Consensus 324 i~iGDD~TDedmF~~L~~~~~G~-~I~Vgn~~----~~t~A~y~L~dp~eV-~~~L~~L~~~ 379 (384)
T PLN02580 324 IYIGDDRTDEDAFKVLREGNRGY-GILVSSVP----KESNAFYSLRDPSEV-MEFLKSLVTW 379 (384)
T ss_pred EEECCCchHHHHHHhhhccCCce-EEEEecCC----CCccceEEcCCHHHH-HHHHHHHHHh
Confidence 799999999888765 343 45554432 123467888998888 5666554443
No 148
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=88.96 E-value=0.7 Score=33.93 Aligned_cols=34 Identities=6% Similarity=-0.025 Sum_probs=27.2
Q ss_pred CCCCCCcEEEE--ecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVV--EDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~i--gDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
++++.++++.| ||+.||+.+=+.||..++ +..+.
T Consensus 625 ~gI~~~eViafalGDs~NDisMLe~Ag~gVA-M~~~~ 660 (694)
T PRK14502 625 FRLNFGNIHTFGLGDSENDYSMLETVDSPIL-VQRPG 660 (694)
T ss_pred hCCCccceEEEEcCCcHhhHHHHHhCCceEE-EcCCC
Confidence 46677888888 999999999999999755 44433
No 149
>PTZ00174 phosphomannomutase; Provisional
Probab=87.59 E-value=0.48 Score=29.94 Aligned_cols=29 Identities=7% Similarity=-0.147 Sum_probs=25.3
Q ss_pred CCcEEEEec----CHHhHHHHHHcCCeEEEEcC
Q 048682 6 EKDCLVVED----SVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 6 p~~~l~igD----s~~di~aA~~AG~~~i~v~~ 34 (75)
++++++||| +.||+.+=+.++...++|.+
T Consensus 200 ~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 200 FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 579999999 89999999998887787763
No 150
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=86.69 E-value=0.16 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
++++.+++|.||||-.+|+-.=.+.|.++.
T Consensus 94 ~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a 123 (170)
T COG1778 94 KLNLDPEEVAYVGDDLVDLPVMEKVGLSVA 123 (170)
T ss_pred HhCCCHHHhhhhcCccccHHHHHHcCCccc
Confidence 368999999999999999999999998765
No 151
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.03 E-value=2.2 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCCcEEEEecCHHhHHHHHHcCCe
Q 048682 5 SEKDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~AG~~ 28 (75)
.+..+++||||.+|++.-+.+.-+
T Consensus 205 ~d~sa~~VGDSItDv~ml~~~rgr 228 (315)
T COG4030 205 IDFSAVVVGDSITDVKMLEAARGR 228 (315)
T ss_pred CCcceeEecCcccchHHHHHhhcc
Confidence 345589999999998876666543
No 152
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=83.16 E-value=5.6 Score=26.58 Aligned_cols=29 Identities=38% Similarity=0.363 Sum_probs=21.4
Q ss_pred EEEEecCHHhHH-HHHHcCCeEEEEcCCCCc
Q 048682 9 CLVVEDSVIGLQ-AATRAGMACVITYTSSTA 38 (75)
Q Consensus 9 ~l~igDs~~di~-aA~~AG~~~i~v~~~~~~ 38 (75)
.+|||||- ||+ -|-..|.++|-+......
T Consensus 260 ~~vvgdSs-GI~eEa~~lg~P~v~iR~~geR 289 (346)
T PF02350_consen 260 DLVVGDSS-GIQEEAPSLGKPVVNIRDSGER 289 (346)
T ss_dssp SEEEESSH-HHHHHGGGGT--EEECSSS-S-
T ss_pred eEEEEcCc-cHHHHHHHhCCeEEEecCCCCC
Confidence 46899999 999 999999999988654433
No 153
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=81.28 E-value=2.8 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
-++|+.+.++.-.|...|+++|++.+.
T Consensus 259 ~~~Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 259 DLVISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred CEEEecCCHHHHHHHHcCCCEEEEecC
Confidence 468999999999999999999999764
No 154
>PLN03190 aminophospholipid translocase; Provisional
Probab=80.96 E-value=1.2 Score=34.48 Aligned_cols=47 Identities=9% Similarity=-0.036 Sum_probs=34.0
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
.-+++|||+.||+-+=++|.+-. ++.+..+. +....+|+.+..|..|
T Consensus 872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG~EG~-qA~~aSDfaI~~Fr~L 918 (1178)
T PLN03190 872 DMTLAIGDGANDVSMIQMADVGV-GISGQEGR-QAVMASDFAMGQFRFL 918 (1178)
T ss_pred cEEEEECCCcchHHHHHhcCeee-eecCchhH-HHHHhhccchhhhHHH
Confidence 45899999999999999998754 66433221 2334678888887766
No 155
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=79.50 E-value=3 Score=22.37 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCCcEEEEecCH-HhH----HHHHHcCCeEEEEcCC
Q 048682 5 SEKDCLVVEDSV-IGL----QAATRAGMACVITYTS 35 (75)
Q Consensus 5 ~p~~~l~igDs~-~di----~aA~~AG~~~i~v~~~ 35 (75)
.|++.|+||-|. +|+ .+|..+|+.+|+|...
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 378899999885 554 4677889999999754
No 156
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=77.96 E-value=6 Score=22.82 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=19.4
Q ss_pred CCCCCcEEEE----ecCHH---hHHHHHHcCCeEEEEc
Q 048682 3 GISEKDCLVV----EDSVI---GLQAATRAGMACVITY 33 (75)
Q Consensus 3 ~~~p~~~l~i----gDs~~---di~aA~~AG~~~i~v~ 33 (75)
.+.|.+++++ |.|++ -++.|++-||++|++.
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4678888866 56654 5667888899999885
No 157
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=77.78 E-value=1.1 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCe-EEEEcCCCCc
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMA-CVITYTSSTA 38 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~-~i~v~~~~~~ 38 (75)
|+.-++.+||||+.+|+-.+++-+-. .++...+++-
T Consensus 166 g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l 202 (234)
T PF06888_consen 166 GVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPL 202 (234)
T ss_pred CCCcceEEEECCCCCCcCcccccCCCCEEecCCCChH
Confidence 35567899999999999999987765 4555556543
No 158
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=76.13 E-value=3.7 Score=27.39 Aligned_cols=29 Identities=14% Similarity=-0.046 Sum_probs=24.2
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
.+|.+|||+||+..=..+-..+| |+.+..
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vv-i~~~~~ 256 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVV-LPSPIA 256 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEE-ecCCCC
Confidence 68999999999999999999877 555443
No 159
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=72.56 E-value=3.6 Score=26.60 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.6
Q ss_pred HHhHHHHHHcCCeEEEEcCCC
Q 048682 16 VIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~ 36 (75)
..=++||++.|+++|.|..+.
T Consensus 213 ~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 213 LEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred HHHHHHHHHcCCcEEEEeCCC
Confidence 556899999999999997764
No 160
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=71.52 E-value=10 Score=22.10 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=33.2
Q ss_pred hHHHHHHcCCeEEEEcCCCCch--hhhhcc--ceeeCCCCCCCHHHHHHHHHHHhhccCCC
Q 048682 18 GLQAATRAGMACVITYTSSTAE--QDFKDA--IAIYPDLSNVRLKDLELLLQNLQQLNLPN 74 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~--~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 74 (75)
=+.+|+.-|.+|++|.-..... ..+.-. ..+++++.++.-+.+++-+...++.-+|+
T Consensus 12 Il~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N~I~VPh 72 (124)
T PF06849_consen 12 ILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMNAIFVPH 72 (124)
T ss_dssp HHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTTEEE--B
T ss_pred HhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCCeEEecC
Confidence 3578999999999887654322 122223 34678999986566665555555555554
No 161
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=71.07 E-value=1.7 Score=27.60 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.5
Q ss_pred CCCCCcEEEEecCHHhHHHHHH
Q 048682 3 GISEKDCLVVEDSVIGLQAATR 24 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~ 24 (75)
+.+-+.++||||..+|++|-..
T Consensus 170 ~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 170 NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred CCChheeEEecCCccccccCCc
Confidence 4566789999999999998766
No 162
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=68.05 E-value=14 Score=26.90 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCCchhhh-----hccceeeCCCCCCCHHHHHHHHHHH
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDF-----KDAIAIYPDLSNVRLKDLELLLQNL 67 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~ 67 (75)
.-|+||.--+..|++-|+.++.|.-.......+ .....++++...+ +..|..+++.+
T Consensus 574 ~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fgqngYa~V~~v~~L-P~~L~~lyrkL 635 (637)
T COG4548 574 FGIEDTREAVIEARKSGIEVFNVTLDREAISYLPALFGQNGYAFVERVAQL-PGALPPLYRKL 635 (637)
T ss_pred cchhhHHHHHHHHHhcCceEEEEEecchhhhhhHHHhccCceEEccchhhc-chhHHHHHHHh
Confidence 468899999999999999988776433222221 2334678888888 77777777764
No 163
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=66.40 E-value=4.9 Score=25.86 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=16.8
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.=++||++.|+++|.|..+.
T Consensus 210 eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 210 EKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 34789999999999998764
No 164
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=65.08 E-value=8 Score=21.13 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCCcEEEE-ecCHHhHHHHHHcCCeEEEEcCCCCch
Q 048682 5 SEKDCLVV-EDSVIGLQAATRAGMACVITYTSSTAE 39 (75)
Q Consensus 5 ~p~~~l~i-gDs~~di~aA~~AG~~~i~v~~~~~~~ 39 (75)
.+...|++ ||+..=+.+|..+|+.++.+.++....
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~ 74 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPS 74 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 35677777 999888999999999998887766443
No 165
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=64.90 E-value=9.6 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~ 33 (75)
.-++|+||..+++-|-..|.++|.+.
T Consensus 282 a~~vitdSSggi~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 282 ADAVIGNSSSGIIEAPSFGVPTINIG 307 (365)
T ss_pred CCEEEEcChhHHHhhhhcCCCEEeec
Confidence 35789999999999999999999775
No 166
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=61.74 E-value=9.8 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.7
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.=++||++.|+++|.|..+.
T Consensus 206 eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 206 AKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 44789999999999997764
No 167
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=60.25 E-value=53 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHhHHHHHHcCCeEEEEcCC
Q 048682 16 VIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~ 35 (75)
..||+.|+++|+...++..+
T Consensus 20 ~~di~~A~~~GIDgFaLNig 39 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIG 39 (386)
T ss_pred HHHHHHHHHcCCCEEEEecc
Confidence 68999999999999988766
No 168
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=59.70 E-value=17 Score=23.33 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=24.0
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
-++|+.+.+.+-.|..+|++++++.+.
T Consensus 252 ~~vI~~RlH~~I~A~~~gvP~i~i~y~ 278 (298)
T TIGR03609 252 RLVIGMRLHALILAAAAGVPFVALSYD 278 (298)
T ss_pred CEEEEechHHHHHHHHcCCCEEEeecc
Confidence 369999999999999999999999543
No 169
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.60 E-value=18 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCCCCcEEEE-e---cCHHhHHHHHHcCCeEEEEcCCCCchhh-h--hccceeeCCCCC
Q 048682 3 GISEKDCLVV-E---DSVIGLQAATRAGMACVITYTSSTAEQD-F--KDAIAIYPDLSN 54 (75)
Q Consensus 3 ~~~p~~~l~i-g---Ds~~di~aA~~AG~~~i~v~~~~~~~~~-~--~~~~~~~~~~~~ 54 (75)
|+.|..-+.| | =..-+++-|++-|++++++..+...+++ + -+++..+.++++
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d 236 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTED 236 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCC
Confidence 4556665533 2 1246899999999999999888644433 2 356666666643
No 170
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=58.15 E-value=6 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCCcEEEEecCH-HhHHHHH---------------HcCCeEEEEcCCCC
Q 048682 5 SEKDCLVVEDSV-IGLQAAT---------------RAGMACVITYTSST 37 (75)
Q Consensus 5 ~p~~~l~igDs~-~di~aA~---------------~AG~~~i~v~~~~~ 37 (75)
+++...||||.+ +|+..|. .-|+.+|.|.+|-.
T Consensus 296 ~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~ 344 (389)
T KOG1618|consen 296 PIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVY 344 (389)
T ss_pred CcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeee
Confidence 356778999997 8999996 66788888876643
No 171
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=57.81 E-value=34 Score=22.52 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+||.++|+..+++-....+ .....+....++++.++.+++++++.
T Consensus 215 a~AAvA~GadGl~iEvHpdP------~~AlsDg~q~l~~~~~~~ll~~l~~i 260 (264)
T PRK05198 215 ARAAVAVGVAGLFIETHPDP------DNALSDGPNMLPLDKLEPLLEQLKAI 260 (264)
T ss_pred HHHHHHcCCCEEEEEeCCCc------cccCCCccccCCHHHHHHHHHHHHHH
Confidence 46899999999888543221 23445677788899999988887754
No 172
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=57.05 E-value=9.9 Score=24.53 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=18.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAAT 23 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~ 23 (75)
+|.+|+++.+.|||.-|-.++.
T Consensus 147 ~g~dp~~i~v~GdSAGG~La~~ 168 (312)
T COG0657 147 LGIDPSRIAVAGDSAGGHLALA 168 (312)
T ss_pred hCCCccceEEEecCcccHHHHH
Confidence 6889999999999987655543
No 173
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=56.01 E-value=38 Score=22.23 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+||.++|+..+++-....+ .....+....++++.++.+++.+++.
T Consensus 207 a~AAvA~GaDGl~iEvHpdP------~~AlsDg~q~l~~~~~~~ll~~l~~i 252 (258)
T TIGR01362 207 ARAAVAVGIDGLFMETHPDP------KNAKSDGPNMLPLSELEGLLEKLLAI 252 (258)
T ss_pred HHHHHHhCCCEEEEEeCCCc------cccCCCccccCCHHHHHHHHHHHHHH
Confidence 46789999998888543321 22345667788899998888887654
No 174
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=55.50 E-value=23 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.2
Q ss_pred CcEEEEecCHHhHHHHHH---cCCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATR---AGMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~---AG~~~i~v~~ 34 (75)
+++++||-.+.||+||.. .|.+++.|--
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEK 155 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEK 155 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999999985 6899998853
No 175
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=54.88 E-value=17 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEecCHHhHH----HHHHcCCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQ----AATRAGMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~----aA~~AG~~~i~v~~~~ 36 (75)
+|..|+.+|||.|+...++ +.++.|+..+++.+..
T Consensus 174 ~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 174 INQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 5778999999999987665 4566788888887654
No 176
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.85 E-value=23 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCCcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 5 SEKDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
.+.++|+||=...|+.||.+| |.+++.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lie 33 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFS 33 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEE
Confidence 567899999999999888665 88888775
No 177
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=54.75 E-value=74 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.6
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+.+.|+||..||..+=+.|++...
T Consensus 509 ~~VamvGDG~NDapAL~~AdvGiA 532 (675)
T TIGR01497 509 KLVAMTGDGTNDAPALAQADVGVA 532 (675)
T ss_pred CeEEEECCCcchHHHHHhCCEeEE
Confidence 358899999999999999997643
No 178
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.27 E-value=17 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=16.4
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
++||++.. ...|++.|++++.+..+
T Consensus 128 viVGg~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 128 VIVGGGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp EEEESHHH-HHHHHHTTSEEEESS--
T ss_pred EEECCHHH-HHHHHHcCCcEEEEEec
Confidence 56777753 67778888887776544
No 179
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=53.57 E-value=36 Score=22.62 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhcc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 71 (75)
..+|.++|...+.+.-...+ .....++-++++++.++++..++++..
T Consensus 235 a~AA~AaGAdglmiEVHp~P------~~AlsD~~Qql~~~~f~~l~~~~~~~~ 281 (286)
T COG2876 235 AKAAIAAGADGLMIEVHPDP------EKALSDAKQQLTPEEFEELVKELRALA 281 (286)
T ss_pred HHHHHhccCCeeEEEecCCc------ccccCcccccCCHHHHHHHHHHHHHHh
Confidence 46899999988877533211 234457778899999999998887654
No 180
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=53.18 E-value=28 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=27.7
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
+|-+.-.-++|||...--+||+.-+++++-|...
T Consensus 226 fg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 226 FGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred hCCCCceEEEeCCChhHHHHHHhcCCCeEEeecC
Confidence 3444556679999999999999999999988654
No 181
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=52.72 E-value=28 Score=26.03 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=28.7
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
..+.||||..||.-|=..|-+- |++ +...+-....+|.++ +++..+
T Consensus 600 ~~VamVGDGINDAPALA~AdVG-iAm--G~GtDvA~eaADvvL~~~dL~~v 647 (713)
T COG2217 600 RKVAMVGDGINDAPALAAADVG-IAM--GSGTDVAIEAADVVLMRDDLSAV 647 (713)
T ss_pred CEEEEEeCCchhHHHHhhcCee-Eee--cCCcHHHHHhCCEEEecCCHHHH
Confidence 3588999999999988888753 333 333322345566543 445544
No 182
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=52.53 E-value=49 Score=22.11 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+||.++|+..+++-....+ .....+....++++.++.+++.+++.
T Consensus 226 arAAvA~GaDGlfiEvHpdP------~~AlsDg~q~l~~~~l~~ll~~l~~i 271 (290)
T PLN03033 226 ARTAVAVGVDGIFMEVHDDP------LSAPVDGPTQWPLRHLEELLEELIAI 271 (290)
T ss_pred HHHHHHhCCCEEEEEecCCc------cccCCCcccCcCHHHHHHHHHHHHHH
Confidence 57899999999988643322 12345666777888888877776543
No 183
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=52.51 E-value=23 Score=21.67 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=21.9
Q ss_pred CCCCcEEEEecCHHhHHHHHHc----CCeEEEEcCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRA----GMACVITYTS 35 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~A----G~~~i~v~~~ 35 (75)
-+..+.++||++..|+..|.+. |=-.+.+..+
T Consensus 63 hDshniiviG~~~~dm~~A~n~l~~~gGG~vvv~~g 98 (171)
T PF13382_consen 63 HDSHNIIVIGTNDEDMALAANRLIEMGGGIVVVDDG 98 (171)
T ss_dssp TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3567899999999999999876 4334545444
No 184
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=51.66 E-value=55 Score=21.78 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+||.++|+..+++-....+ .....+....++++.++.+++.+++.
T Consensus 223 arAAvA~GaDGl~iEvHpdP------~~AlsDg~q~l~~~~~~~l~~~l~~i 268 (281)
T PRK12457 223 ARAGMAVGLAGLFLEAHPDP------DRARCDGPSALPLDQLEPFLSQVKAL 268 (281)
T ss_pred HHHHHHhCCCEEEEEecCCc------cccCCCcccccCHHHHHHHHHHHHHH
Confidence 57899999999988644322 12344666777888888877776543
No 185
>PRK10162 acetyl esterase; Provisional
Probab=51.64 E-value=15 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=18.7
Q ss_pred CCCCCCcEEEEecCHHhHHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAATR 24 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~ 24 (75)
+++++++++++|||.-+..++.-
T Consensus 149 ~~~d~~~i~l~G~SaGG~la~~~ 171 (318)
T PRK10162 149 YGINMSRIGFAGDSAGAMLALAS 171 (318)
T ss_pred hCCChhHEEEEEECHHHHHHHHH
Confidence 57889999999999987766543
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=51.63 E-value=19 Score=25.70 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
-++|||... ...|+++||+.|.+..+
T Consensus 147 ~~viG~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 147 GAVVGAGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CEEECChHH-HHHHHHcCCceEEEecH
Confidence 468899954 78899999999998764
No 187
>PRK11590 hypothetical protein; Provisional
Probab=50.55 E-value=23 Score=21.70 Aligned_cols=28 Identities=11% Similarity=-0.202 Sum_probs=23.3
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+.+...|.+.|||.+|+..-.-||-+.+
T Consensus 173 ~~~~~~~~aY~Ds~~D~pmL~~a~~~~~ 200 (211)
T PRK11590 173 GTPLRLYSGYSDSKQDNPLLYFCQHRWR 200 (211)
T ss_pred CCCcceEEEecCCcccHHHHHhCCCCEE
Confidence 4456678899999999999999998765
No 188
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=50.41 E-value=28 Score=26.39 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=28.9
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
.+.|+||..||.-|=+.|.+-. ++..+ ..-....+|.++ ++|..+
T Consensus 604 vVam~GDGvNDapALk~AdVGI-Amg~g--tdvAk~aADiVLldd~~~~I 650 (867)
T TIGR01524 604 TVGFLGDGINDAPALRKADVGI-SVDTA--ADIAKEASDIILLEKSLMVL 650 (867)
T ss_pred EEEEECCCcccHHHHHhCCEEE-EeCCc--cHHHHHhCCEEEecCChHHH
Confidence 4779999999999999999753 33332 222234456655 445444
No 189
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=50.16 E-value=9.6 Score=22.78 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=8.8
Q ss_pred EEEEecCHHhH
Q 048682 9 CLVVEDSVIGL 19 (75)
Q Consensus 9 ~l~igDs~~di 19 (75)
.++||||.+|-
T Consensus 1 i~~fGDS~td~ 11 (234)
T PF00657_consen 1 IVVFGDSLTDG 11 (234)
T ss_dssp EEEEESHHHHT
T ss_pred CEEEeehhccc
Confidence 47899998776
No 190
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=50.14 E-value=23 Score=27.01 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=28.6
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeC--CCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP--DLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l 55 (75)
-+.|+||..||.-|=++|.+-.. +.- ...+-....+|.++. +|..+
T Consensus 670 vVam~GDGvNDapALk~AdVGIA-mg~-~gtdvAk~aADivL~dd~f~~I 717 (941)
T TIGR01517 670 VVAVTGDGTNDAPALKLADVGFS-MGI-SGTEVAKEASDIILLDDNFASI 717 (941)
T ss_pred EEEEECCCCchHHHHHhCCccee-cCC-CccHHHHHhCCEEEecCCHHHH
Confidence 47899999999999999986432 220 112222345666664 44444
No 191
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=50.11 E-value=19 Score=27.17 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=37.5
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHH
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQN 66 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 66 (75)
.+++-||-=.-=+.||+++|+++|.++-.... +...-++.+-+++.-.....+..++..
T Consensus 713 G~VLpIGGLKEKllAA~R~GIk~viiP~~N~~-DleeiP~~vk~~l~i~~V~~~~eVl~~ 771 (782)
T COG0466 713 GRVLPIGGLKEKLLAAHRGGIKTVIIPKDNER-DLEEIPDNVKEGLEIHPVKTIDEVLKL 771 (782)
T ss_pred eceeecccHHHHHHHHHhcCCcEEeccccccc-cHHhCCHHHHcCCeEEEeccHHHHHHH
Confidence 45677777777789999999999999765432 112334555555555444555544443
No 192
>PLN02645 phosphoglycolate phosphatase
Probab=50.09 E-value=36 Score=22.31 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=22.0
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
..+.+++.++..+.+.++.+|+.++.
T Consensus 111 ~~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 111 KDKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CCCEEEEEcCHHHHHHHHHCCCEEec
Confidence 34568999999999999999998765
No 193
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=49.99 E-value=26 Score=27.25 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCC--CCCC
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD--LSNV 55 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~--~~~l 55 (75)
+-+.|+||..||.-|=+.|.+... +.... .......+|.++.+ |..+
T Consensus 746 ~~Vam~GDGvNDapaLk~AdVGIA-mg~~g-t~vak~aADivl~dd~f~~I 794 (1053)
T TIGR01523 746 AFCAMTGDGVNDSPSLKMANVGIA-MGING-SDVAKDASDIVLSDDNFASI 794 (1053)
T ss_pred CeeEEeCCCcchHHHHHhCCccEe-cCCCc-cHHHHHhcCEEEecCCHHHH
Confidence 347799999999999999996533 22111 11123456776643 5544
No 194
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=49.98 E-value=17 Score=28.02 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=32.0
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCC
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 55 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l 55 (75)
+-++|+||+.+|+.+=++|.+-. ++.+.... +....+|+++.+|..+
T Consensus 769 ~~vl~iGDG~ND~~mlk~AdVGI-gi~g~eg~-qA~~aaD~~i~~F~~L 815 (1057)
T TIGR01652 769 KTTLAIGDGANDVSMIQEADVGV-GISGKEGM-QAVMASDFAIGQFRFL 815 (1057)
T ss_pred CeEEEEeCCCccHHHHhhcCeee-EecChHHH-HHHHhhhhhhhhHHHH
Confidence 46889999999999999998764 55432211 1224567777765544
No 195
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=49.59 E-value=5.9 Score=23.74 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=17.5
Q ss_pred CCCCCCcEEEEecCHHhHHHHH
Q 048682 2 LGISEKDCLVVEDSVIGLQAAT 23 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~ 23 (75)
++.++++++++|||.-+-.+..
T Consensus 66 ~~~d~~~i~l~G~SAGg~la~~ 87 (211)
T PF07859_consen 66 LGIDPERIVLIGDSAGGHLALS 87 (211)
T ss_dssp HTEEEEEEEEEEETHHHHHHHH
T ss_pred ccccccceEEeecccccchhhh
Confidence 4678899999999987766554
No 196
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=49.36 E-value=22 Score=27.31 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.1
Q ss_pred cEEEEecCHHhHHHHHHcCCeE
Q 048682 8 DCLVVEDSVIGLQAATRAGMAC 29 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~ 29 (75)
-+.|+||+.+|+.|=+.|.+-.
T Consensus 685 vv~~~GDG~ND~paLk~AdVGi 706 (997)
T TIGR01106 685 IVAVTGDGVNDSPALKKADIGV 706 (997)
T ss_pred EEEEECCCcccHHHHhhCCcce
Confidence 4779999999999999999653
No 197
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=49.08 E-value=8.2 Score=25.01 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCHHhHHHHHHcCCe-EEEEcCCCC
Q 048682 3 GISEKDCLVVEDSVIGLQAATRAGMA-CVITYTSST 37 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~AG~~-~i~v~~~~~ 37 (75)
|+.-++.+||||+-+|+-.-..-.-. ++....+++
T Consensus 179 gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfp 214 (256)
T KOG3120|consen 179 GVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFP 214 (256)
T ss_pred CCceeeEEEEcCCCCCcCcchhcccCceecccCCCc
Confidence 45667899999999999876665544 444445554
No 198
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=48.74 E-value=19 Score=21.33 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=20.1
Q ss_pred EEEecCHHhHHHHHHcCCeE--EEEcCC
Q 048682 10 LVVEDSVIGLQAATRAGMAC--VITYTS 35 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~--i~v~~~ 35 (75)
..+||+.+|+++-.++|++. |.+-++
T Consensus 123 ~~~gn~~~D~~~y~~~gi~~~~i~~i~~ 150 (157)
T smart00775 123 AGFGNRITDVISYSAVGIPPSRIFTINP 150 (157)
T ss_pred EEeCCCchhHHHHHHcCCChhhEEEECC
Confidence 45888899999999999975 444443
No 199
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=48.27 E-value=7.2 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=19.5
Q ss_pred CCcEEEEecCHHhHHHHHHc-CCe---EEEEcCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRA-GMA---CVITYTSS 36 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~A-G~~---~i~v~~~~ 36 (75)
..+++.+|||..|+.+|... ... .|++.+..
T Consensus 179 R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ 213 (246)
T PF05822_consen 179 RTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDK 213 (246)
T ss_dssp --EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SS
T ss_pred CCcEEEecCccCChHhhcCCCccccEEEEEecccC
Confidence 46799999999999998766 333 45665543
No 200
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=48.15 E-value=32 Score=25.11 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.9
Q ss_pred cEEEEecCHHhHHHHHHc-------CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-------GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-------G~~~i~v~ 33 (75)
++|+||-...|+.||.+| |.+++.+.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~Vilie 33 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVE 33 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEE
Confidence 478999999999999876 78888774
No 201
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=47.59 E-value=32 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.3
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
-.+.+|.+.....+.|++||...++
T Consensus 53 ~kV~Vf~~~~~~~~~Ak~aGa~~vg 77 (141)
T TIGR01170 53 PKIAVFTKGASEVEEAREAGADYVG 77 (141)
T ss_pred CEEEEECCChHHHHHHHHcCCCEeC
Confidence 4678898888877899999988653
No 202
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=46.88 E-value=23 Score=17.49 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.9
Q ss_pred hHHHHHHcCCeEEEEcCCC
Q 048682 18 GLQAATRAGMACVITYTSS 36 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~ 36 (75)
=++.|++.|+..+++.+..
T Consensus 20 ~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 20 LVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHcCCCEEEEeeCC
Confidence 3688999999999998654
No 203
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=46.18 E-value=63 Score=20.90 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=31.4
Q ss_pred hHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhh
Q 048682 18 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQ 69 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 69 (75)
-..+|.+.|...+.+-...+....+ .+....++++.|..+++.+++
T Consensus 214 ~~~aAva~Ga~gl~iE~H~t~d~a~------~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 214 LAKAAIAAGADGLMIEVHPDPEKAL------SDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred HHHHHHHcCCCEEEEEeCCCccccC------CcchhcCCHHHHHHHHHHHhh
Confidence 3567888898877665443322111 466777889999999988775
No 204
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=44.82 E-value=17 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=12.2
Q ss_pred EEEEecCHHhHHHH
Q 048682 9 CLVVEDSVIGLQAA 22 (75)
Q Consensus 9 ~l~igDs~~di~aA 22 (75)
+++|||..+|+.+.
T Consensus 191 vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 191 VLLFGDNLLDFDDF 204 (266)
T ss_pred EEEECCCHHHhhhh
Confidence 78999999999764
No 205
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=44.59 E-value=11 Score=23.64 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.8
Q ss_pred EEEEecCHHhHH
Q 048682 9 CLVVEDSVIGLQ 20 (75)
Q Consensus 9 ~l~igDs~~di~ 20 (75)
.++||||.+|.-
T Consensus 2 l~vFGDS~sD~G 13 (270)
T cd01846 2 LVVFGDSLSDTG 13 (270)
T ss_pred eEEeeCccccCC
Confidence 567888887763
No 206
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=44.31 E-value=43 Score=25.62 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=28.6
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
-+.|+||..||.-|=++|.+- |++..+ .+-....+|.++ +++..+
T Consensus 639 vVam~GDGvNDaPALk~ADVG-IAmg~g--tdvAkeaADiVLldd~~~~I 685 (902)
T PRK10517 639 VVGFMGDGINDAPALRAADIG-ISVDGA--VDIAREAADIILLEKSLMVL 685 (902)
T ss_pred EEEEECCCcchHHHHHhCCEE-EEeCCc--CHHHHHhCCEEEecCChHHH
Confidence 367999999999999999965 333322 222234566665 444444
No 207
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.18 E-value=60 Score=21.14 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhh
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQ 69 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 69 (75)
-.+|.++|...+.+-..... .....+....++++.|+++++++++
T Consensus 205 a~AAvA~GAdGl~IE~H~~P------~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 205 AKIAKAVGANGIMMEVHPDP------DHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred HHHHHHhCCCEEEEEecCCc------ccccCchhhhCCHHHHHHHHHHhcc
Confidence 46788888887766433221 1234566778899999999988865
No 208
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=43.74 E-value=43 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=14.8
Q ss_pred EEEecC--HHhHHHHHHcCCeEEEEc
Q 048682 10 LVVEDS--VIGLQAATRAGMACVITY 33 (75)
Q Consensus 10 l~igDs--~~di~aA~~AG~~~i~v~ 33 (75)
|+-||+ ..-++..++.|.+++.+.
T Consensus 101 LvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 101 LVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp EE---GGGHHHHHHHHHH--EEEEEE
T ss_pred EEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 455888 478999999999887776
No 209
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=43.57 E-value=47 Score=25.37 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=29.4
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
-+.|+||..||.-|=++|.+- |++..+ ..-....+|.++ ++|..+
T Consensus 639 vVamtGDGvNDaPALk~ADVG-IAmg~g--tdvAkeaADiVLldd~f~~I 685 (903)
T PRK15122 639 TVGFLGDGINDAPALRDADVG-ISVDSG--ADIAKESADIILLEKSLMVL 685 (903)
T ss_pred EEEEECCCchhHHHHHhCCEE-EEeCcc--cHHHHHhcCEEEecCChHHH
Confidence 367999999999999999975 344332 222234566665 455554
No 210
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.36 E-value=42 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=19.5
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEcCC
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITYTS 35 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~~~ 35 (75)
++++||-.+.|+.||..| |.+++.+-..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578999999999999998 8888877543
No 211
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=42.84 E-value=1.1e+02 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.5
Q ss_pred cEEEEecCHHhHHHHHHcCCe
Q 048682 8 DCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~ 28 (75)
-+.|+||..||.-|=++|.+-
T Consensus 509 ~VaMtGDGvNDAPALa~ADVG 529 (679)
T PRK01122 509 LVAMTGDGTNDAPALAQADVG 529 (679)
T ss_pred eEEEECCCcchHHHHHhCCEe
Confidence 367999999999999999864
No 212
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=42.79 E-value=44 Score=21.96 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=31.6
Q ss_pred CHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhccCC
Q 048682 15 SVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQLNLP 73 (75)
Q Consensus 15 s~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 73 (75)
...|.++|.+||..-|+|....... +.. .-+..--+-++..+..+....+..++|
T Consensus 95 NlkGf~~AvaaGa~EvavFgaASe~--Fsl--kNiNctiees~~rf~~v~kaA~~~ni~ 149 (316)
T KOG2368|consen 95 NLKGFEAAVAAGAEEVAVFGAASEA--FSL--KNINCTIEESLKRFMEVLKAAQEHNIR 149 (316)
T ss_pred chhhHHHHHhcCceeEEeeehhhhh--hhh--ccCCccHHHHHHHHHHHHHHHHHcCCc
Confidence 3568999999999999886544321 211 111211122255555666666666665
No 213
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=42.58 E-value=85 Score=20.59 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=29.8
Q ss_pred CcEEEEecCHHh---HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 7 KDCLVVEDSVIG---LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 7 ~~~l~igDs~~d---i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
-++++|=|...+ |.-|+..|+++|++.+..... ...|++++.=.+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp---d~VD~~IP~Ndd 204 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP---DGVDYVIPGNDD 204 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC---ccCceeecCCCh
Confidence 357888888654 566888899999998765432 234555554443
No 214
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=42.50 E-value=17 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=8.8
Q ss_pred CcEEEEecCHH
Q 048682 7 KDCLVVEDSVI 17 (75)
Q Consensus 7 ~~~l~igDs~~ 17 (75)
+.+++||||..
T Consensus 1 ~~iv~~GdS~t 11 (174)
T cd01841 1 KNIVFIGDSLF 11 (174)
T ss_pred CCEEEEcchhh
Confidence 35799999975
No 215
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=42.48 E-value=13 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.9
Q ss_pred CcEEEEecCHHhH
Q 048682 7 KDCLVVEDSVIGL 19 (75)
Q Consensus 7 ~~~l~igDs~~di 19 (75)
...++||||..|.
T Consensus 2 ~~i~vFGDSl~D~ 14 (281)
T cd01847 2 SRVVVFGDSLSDV 14 (281)
T ss_pred CceEEecCccccc
Confidence 3567889998875
No 216
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=42.47 E-value=6.8 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCcEEEEecCHHhHHHHHHcCCe
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~ 28 (75)
|.-++.|||..-|+.+..++|..
T Consensus 16 pR~gvaIGd~VlDL~al~~~g~~ 38 (107)
T PF09298_consen 16 PRVGVAIGDQVLDLSALAAAGLF 38 (107)
T ss_dssp EEEEEEETTEEEEHHHH--GGG-
T ss_pred CeeEEEECCEEEehHHHhhhccc
Confidence 45688999999999999999853
No 217
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=41.82 E-value=41 Score=25.06 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=28.5
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
-+.|+||..||.-|=++|.+- |++..+ ..-....+|.++ +++..+
T Consensus 536 ~VamvGDGvNDapAL~~AdVG-IAm~~g--tdvAkeaADivLl~d~l~~I 582 (755)
T TIGR01647 536 LVGMTGDGVNDAPALKKADVG-IAVAGA--TDAARSAADIVLTEPGLSVI 582 (755)
T ss_pred EEEEEcCCcccHHHHHhCCee-EEecCC--cHHHHHhCCEEEEcCChHHH
Confidence 467999999999999999976 444332 222223455554 344444
No 218
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=41.21 E-value=54 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCCcEEEEecCH-HhHHHHHHcCCeE-EEEcCCCCchh
Q 048682 4 ISEKDCLVVEDSV-IGLQAATRAGMAC-VITYTSSTAEQ 40 (75)
Q Consensus 4 ~~p~~~l~igDs~-~di~aA~~AG~~~-i~v~~~~~~~~ 40 (75)
++|.+.- .+|.. .=+++|+..|.+. |+|.||.....
T Consensus 101 INPGNig-~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~ 138 (361)
T COG0821 101 INPGNIG-FKDRVREVVEAAKDKGIPIRIGVNAGSLEKR 138 (361)
T ss_pred ECCcccC-cHHHHHHHHHHHHHcCCCEEEecccCchhHH
Confidence 3455432 33443 3478999999985 99999876543
No 219
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=41.19 E-value=38 Score=20.97 Aligned_cols=26 Identities=12% Similarity=-0.253 Sum_probs=22.0
Q ss_pred CCCcEEEEecCHHhHHHHHHcCCeEE
Q 048682 5 SEKDCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~AG~~~i 30 (75)
+.+.|.+.|||.+|+..-.-||-+.+
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~ 199 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWR 199 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEE
Confidence 45678899999999999999998765
No 220
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=41.17 E-value=28 Score=26.89 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=18.7
Q ss_pred cEEEEecCHHhHHHHHHcCCe
Q 048682 8 DCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~ 28 (75)
-+.|+||..||+-|=++|.+-
T Consensus 803 ~V~m~GDG~ND~~ALK~AdVG 823 (1054)
T TIGR01657 803 TVGMCGDGANDCGALKQADVG 823 (1054)
T ss_pred eEEEEeCChHHHHHHHhcCcc
Confidence 477999999999999999864
No 221
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.92 E-value=15 Score=21.79 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=9.5
Q ss_pred CCcEEEEecCHH
Q 048682 6 EKDCLVVEDSVI 17 (75)
Q Consensus 6 p~~~l~igDs~~ 17 (75)
|.+.+++|||..
T Consensus 1 ~~~i~~lGDSit 12 (193)
T cd01835 1 PKRLIVVGDSLV 12 (193)
T ss_pred CcEEEEEcCccc
Confidence 457889999975
No 222
>PRK08275 putative oxidoreductase; Provisional
Probab=40.73 E-value=50 Score=23.51 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.4
Q ss_pred cEEEEecCHHhHHHHHHc-----CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-----GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-----G~~~i~v~ 33 (75)
++|+||-...|+.||..| |.+++.+.
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g~g~~Vilve 41 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERNPALRVLLLE 41 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 689999999999999887 67887775
No 223
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.72 E-value=46 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.5
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
++++||=...|+.||..| |.+++.|.-
T Consensus 14 DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK 43 (591)
T PRK07057 14 DVVIVGAGGSGMRASLQLARAGLSVAVLSK 43 (591)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 689999999999888766 888887753
No 224
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=40.70 E-value=98 Score=21.57 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=24.2
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
++||=..+..-.|..+|++++++.+...
T Consensus 330 l~ig~RlHa~I~a~~~gvP~i~i~Y~~K 357 (426)
T PRK10017 330 LTVGTRLHSAIISMNFGTPAIAINYEHK 357 (426)
T ss_pred EEEEecchHHHHHHHcCCCEEEeeehHH
Confidence 6788888999999999999999987543
No 225
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=40.55 E-value=54 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHhHHHHHHcCCeEEEEcCCC
Q 048682 16 VIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~ 36 (75)
..=+++|++.|.+|+.+....
T Consensus 30 L~I~~gAkeeGf~ti~v~~~~ 50 (358)
T PRK13278 30 LQILKGAKKEGFRTIAICKKK 50 (358)
T ss_pred HHHHHHHHHCCCeEEEEEeCC
Confidence 345789999999999887654
No 226
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.54 E-value=44 Score=24.10 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.4
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||=...|+.||.+| |.+++.|.
T Consensus 14 DVvVIG~G~AGl~AAl~Aa~~G~~V~lve 42 (598)
T PRK09078 14 DVVVVGAGGAGLRATLGMAEAGLKTACIT 42 (598)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEE
Confidence 699999999999999776 88888773
No 227
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.99 E-value=63 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.1
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
-++|+||=...|+.||.+| |++++.+.-
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK 38 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSK 38 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEc
Confidence 3699999999999888766 888887753
No 228
>PRK07804 L-aspartate oxidase; Provisional
Probab=39.97 E-value=50 Score=23.48 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=22.7
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++|+||=...|+.||..| |.+++.+.
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~Ville 46 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVT 46 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEE
Confidence 3689999999999998776 88888774
No 229
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=39.66 E-value=68 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEec--CHHhHHHHHHcCCeEEEEc
Q 048682 2 LGISEKDCLVVED--SVIGLQAATRAGMACVITY 33 (75)
Q Consensus 2 l~~~p~~~l~igD--s~~di~aA~~AG~~~i~v~ 33 (75)
+|++|+++++-|- +..+++.|.+.|+..+-+-
T Consensus 76 ~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~vD 109 (394)
T cd06831 76 LGVSPENIIYTNPCKQASQIKYAAKVGVNIMTCD 109 (394)
T ss_pred cCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence 5788888888776 4678999999998776553
No 230
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=39.52 E-value=93 Score=19.28 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.4
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
..+++|+.-||.+|++.+..
T Consensus 127 ~Ai~~Ak~~gm~vI~ltG~~ 146 (176)
T COG0279 127 KAIEAAKEKGMTVIALTGKD 146 (176)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 57889999999999987543
No 231
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=39.50 E-value=45 Score=24.46 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=22.8
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++|+||=...|+.||.+| |.+++.+.
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~Vivle 35 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLS 35 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEe
Confidence 4689999999999988766 88888775
No 232
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=39.21 E-value=72 Score=22.63 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=34.3
Q ss_pred hHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhcc
Q 048682 18 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 71 (75)
=|++-+++|-++||+.++-.........-+.-..|.++ ++++..+++-.++.+
T Consensus 329 li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~I-l~Ev~~ff~vh~~~G 381 (443)
T TIGR01358 329 LLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRFDDI-RSEVKGFFEVHRAEG 381 (443)
T ss_pred HHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHH-HHHHHHHHHHHHHcC
Confidence 46788999999999987754332222223444566666 677777776666555
No 233
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.02 E-value=1.1e+02 Score=19.94 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=34.0
Q ss_pred HHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 16 VIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.....+|.++|+..+.+-........ ..+....++++.|+.+.+.++..
T Consensus 214 ~~~~~aAva~Ga~Gl~iE~H~~pd~a------~~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIEVHPEPEKA------LSDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred HHHHHHHHHcCCCEEEEeccCCcccc------CCchhhcCCHHHHHHHHHHHHHH
Confidence 45688999999887777544332211 14667778899999988887654
No 234
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=38.65 E-value=91 Score=22.12 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=27.1
Q ss_pred CCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 5 SEKDCLVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
.+...+.+||...-+.+|..+|+.++.+.++..
T Consensus 180 ~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~ 212 (546)
T PRK14869 180 EEGDIVIVGDREDIQLAAIEAGVRLLIITGGAP 212 (546)
T ss_pred cCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCC
Confidence 345677789999889999999999998877654
No 235
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=38.44 E-value=73 Score=22.80 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=34.4
Q ss_pred hHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhcc
Q 048682 18 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 71 (75)
=|++-+++|-++||..++-.........-+.-..|.++ +.++..+++-.++.+
T Consensus 349 Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~I-l~Ev~~ff~vh~~~G 401 (474)
T PLN02291 349 LIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAI-RAEVRAFFDVHEQEG 401 (474)
T ss_pred HHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHH-HHHHHHHHHHHHHcC
Confidence 36788999999999987754332222223445666666 677777776666555
No 236
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.35 E-value=52 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=22.7
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++|+||=...|+.||.+| |.+++.+.
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lve 35 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999766 88888774
No 237
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=38.27 E-value=52 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=21.6
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||=...|+.||..| |.+++.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lle 29 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVIS 29 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEe
Confidence 478999999999888765 88888774
No 238
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=38.26 E-value=50 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=16.8
Q ss_pred HhHHHHHHcCCeEEEEcCCCC
Q 048682 17 IGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~~ 37 (75)
.-++.|+..|+++|++.....
T Consensus 127 ~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 127 KAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHHHHHCCCEEEEEeCCCC
Confidence 357889999999999986543
No 239
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=38.08 E-value=20 Score=20.62 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=17.0
Q ss_pred cEEEEecCH-HhHHHHHHcCCeEEEE
Q 048682 8 DCLVVEDSV-IGLQAATRAGMACVIT 32 (75)
Q Consensus 8 ~~l~igDs~-~di~aA~~AG~~~i~v 32 (75)
++++||||. .+........++-+.|
T Consensus 1 ~v~~~GDSv~~~~~~~~~~~~p~~~i 26 (150)
T cd01840 1 DITAIGDSVMLDSSPALQEIFPNIQI 26 (150)
T ss_pred CeeEEeehHHHchHHHHHHHCCCCEE
Confidence 367899997 5766666666655444
No 240
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=38.07 E-value=32 Score=23.60 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=18.5
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~~ 34 (75)
++|+||-++.|+.||.+ +|.+++.|-.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEK 30 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-S
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEEC
Confidence 47899999999987754 5899998853
No 241
>PRK07395 L-aspartate oxidase; Provisional
Probab=37.85 E-value=54 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.4
Q ss_pred cEEEEecCHHhHHHHHHc--CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA--GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A--G~~~i~v~ 33 (75)
++|+||=...|+.||.+| |.+++.+.
T Consensus 11 DVlVVG~G~AGl~AAi~A~~G~~V~lie 38 (553)
T PRK07395 11 DVLVVGSGAAGLYAALCLPSHLRVGLIT 38 (553)
T ss_pred CEEEECccHHHHHHHHHhhcCCCEEEEE
Confidence 689999999999999888 77777764
No 242
>PF07405 DUF1506: Protein of unknown function (DUF1506); InterPro: IPR010875 This entry represents proteins found primarily in Borrelia species. Their function is unknown.
Probab=37.58 E-value=11 Score=21.79 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.0
Q ss_pred CCCCCcEEEEecC-HHhHHHHH
Q 048682 3 GISEKDCLVVEDS-VIGLQAAT 23 (75)
Q Consensus 3 ~~~p~~~l~igDs-~~di~aA~ 23 (75)
.++|++.++++|| ..|+++-.
T Consensus 59 ~I~P~E~v~i~~sNi~D~~~y~ 80 (127)
T PF07405_consen 59 DIKPQELVEIYDSNIFDIQGYS 80 (127)
T ss_pred EeChHHeeeeccCCchhhhhhh
Confidence 5789999999999 58887643
No 243
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=37.47 E-value=25 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHhHHHHHHcCCeEEEEcCC
Q 048682 16 VIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~ 35 (75)
.-=+++|.+.|+++|.|..+
T Consensus 212 ~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 212 YEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHHcCCcEEEEecC
Confidence 44589999999999999776
No 244
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=37.41 E-value=36 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred CcEEEEecCHHhHHHHHHcCCe
Q 048682 7 KDCLVVEDSVIGLQAATRAGMA 28 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~ 28 (75)
..+.|+||..+|..+-+.|.+-
T Consensus 407 ~~v~~vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 407 RVVAMTGDGVNDAPALKKADVG 428 (499)
T ss_pred CEEEEECCChhhHHHHHhCCCc
Confidence 4589999999999999999865
No 245
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=37.41 E-value=92 Score=21.13 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 20 QAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 20 ~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+|.++|+..+.+--..+.... ..+....++++.|..+.+.++..
T Consensus 284 ~AAvA~GAdGliIE~H~~pd~a------lsD~~~sl~p~e~~~lv~~i~~i 328 (335)
T PRK08673 284 LAAVAAGADGLIVEVHPDPEKA------LSDGPQSLTPEEFEELMKKLRAI 328 (335)
T ss_pred HHHHHhCCCEEEEEecCCcccC------CCcchhcCCHHHHHHHHHHHHHH
Confidence 8999999997777544332211 25667778899998888877653
No 246
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=37.20 E-value=56 Score=22.43 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=35.6
Q ss_pred HhHHHHHHcCCeEEEEcCCCCch--hhhhcc--ceeeCCCCCCCHHHHHHHHHHHhhccCCC
Q 048682 17 IGLQAATRAGMACVITYTSSTAE--QDFKDA--IAIYPDLSNVRLKDLELLLQNLQQLNLPN 74 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~~~~--~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 74 (75)
.=+.+|+.-|.+|++|....... ..+..+ ..+++++.++.-+.++.-+...++.-+|+
T Consensus 31 ~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~n~I~IP~ 92 (361)
T COG1759 31 QILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELRELNAIFIPH 92 (361)
T ss_pred HHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHHHHHHcCeEEecC
Confidence 34578999999999887533222 223323 35678888875555555455555555554
No 247
>PRK07121 hypothetical protein; Validated
Probab=37.00 E-value=62 Score=22.50 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.0
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||=...|+.||..| |.+++.+-
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~VillE 50 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGARVLVLE 50 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 699999999999887665 89888774
No 248
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.65 E-value=60 Score=18.03 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.1
Q ss_pred HHhHHHHHHcCCeEEEEcCCCC
Q 048682 16 VIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~~ 37 (75)
..-++.|++.|+++|++.....
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 64 VAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred HHHHHHHHHcCCeEEEEECCCC
Confidence 3567788999999999986543
No 249
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.56 E-value=59 Score=17.85 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.3
Q ss_pred HHhHHHHHHcCCeEEEEcCCCC
Q 048682 16 VIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~~ 37 (75)
..=++.|++.|+++|++.....
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC
Confidence 4567888999999999987543
No 250
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.43 E-value=59 Score=17.78 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.6
Q ss_pred HHhHHHHHHcCCeEEEEcCCC
Q 048682 16 VIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~ 36 (75)
..-++.|++.|+++|++....
T Consensus 63 ~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 63 LAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred HHHHHHHHHcCCeEEEEECCC
Confidence 345778899999999998754
No 251
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.37 E-value=82 Score=21.58 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=29.9
Q ss_pred hHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhh
Q 048682 18 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQ 69 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 69 (75)
=-.+|.++|+..+.+-...+.... .-+....++++.|.++.+.++.
T Consensus 291 ~a~AAva~GAdGliIE~H~~pd~A------lsD~~qsl~p~~~~~l~~~i~~ 336 (352)
T PRK13396 291 MAMAAIAAGTDSLMIEVHPNPAKA------LSDGPQSLTPDRFDRLMQELAV 336 (352)
T ss_pred HHHHHHhhCCCeEEEEecCCcccC------CChhhhcCCHHHHHHHHHHHHH
Confidence 457888899987777544332211 1255667788888887777754
No 252
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=36.23 E-value=25 Score=21.16 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.3
Q ss_pred CCCcEEEEecCHH
Q 048682 5 SEKDCLVVEDSVI 17 (75)
Q Consensus 5 ~p~~~l~igDs~~ 17 (75)
.+..++++|||.+
T Consensus 9 ~~~~iv~~GDSit 21 (191)
T PRK10528 9 AADTLLILGDSLS 21 (191)
T ss_pred CCCEEEEEeCchh
Confidence 3567899999975
No 253
>PRK06116 glutathione reductase; Validated
Probab=36.23 E-value=67 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.0
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++++||-.+.|+.+|..+ |.+++.|-
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE 34 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIE 34 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 699999999999998877 67777775
No 254
>PLN03017 trehalose-phosphatase
Probab=35.80 E-value=67 Score=22.13 Aligned_cols=54 Identities=19% Similarity=0.031 Sum_probs=32.3
Q ss_pred cEEEEecCHHhHHHHHHc---C-CeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHH
Q 048682 8 DCLVVEDSVIGLQAATRA---G-MACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQN 66 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G-~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 66 (75)
-.+||||-.+|-.+=+.. | -..|.|.... ....+.+.+++..++ .+.|..+.+.
T Consensus 304 ~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~~----k~T~A~y~L~dp~eV-~~fL~~L~~~ 361 (366)
T PLN03017 304 FPVYIGDDRTDEDAFKMLRDRGEGFGILVSKFP----KDTDASYSLQDPSEV-MDFLARLVEW 361 (366)
T ss_pred eEEEeCCCCccHHHHHHHhhcCCceEEEECCCC----CCCcceEeCCCHHHH-HHHHHHHHHH
Confidence 368999998875554433 2 2345553211 124467888998888 5666665443
No 255
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=35.57 E-value=65 Score=20.54 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEecC-HHhHHHHHHcCCeEEEEcCC
Q 048682 9 CLVVEDS-VIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 9 ~l~igDs-~~di~aA~~AG~~~i~v~~~ 35 (75)
-++|-|. +.-..+|+..|+++|.+...
T Consensus 96 DlVIsD~~~~~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 96 DLVISDFYPLAALAARRAGIPVIVISNQ 123 (318)
T ss_pred CEEEEcChHHHHHHHHhcCCCEEEEEeh
Confidence 3677786 45789999999999988654
No 256
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.52 E-value=40 Score=19.56 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHHHHHcCCeEEEEcC
Q 048682 19 LQAATRAGMACVITYT 34 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~ 34 (75)
++++++.||++++-.+
T Consensus 50 v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 50 VEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHCCCEEEEEEe
Confidence 6899999999986544
No 257
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=35.41 E-value=53 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=18.8
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
..+++|+|.. ..+.|++||+..|+
T Consensus 72 ~kI~Vfa~~~-~~~~Ak~aGa~~vg 95 (230)
T PRK05424 72 VRVAVFAKGE-KAEEAKAAGADIVG 95 (230)
T ss_pred cEEEEECChH-hHHHHHHcCCCEeC
Confidence 4678899775 57889999998664
No 258
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=35.39 E-value=86 Score=19.08 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.0
Q ss_pred EEecC--HHhHHHHHHcCCeEEEEcCCCCchhhhh
Q 048682 11 VVEDS--VIGLQAATRAGMACVITYTSSTAEQDFK 43 (75)
Q Consensus 11 ~igDs--~~di~aA~~AG~~~i~v~~~~~~~~~~~ 43 (75)
+=||+ ..-+++++..|..++.+........++.
T Consensus 117 ~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~ 151 (181)
T COG1432 117 FSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLR 151 (181)
T ss_pred EcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHH
Confidence 33888 4789999999999987776554444453
No 259
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=35.33 E-value=78 Score=17.76 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=29.4
Q ss_pred EEEecC--HHhHHHHHHcCCeEEEEcCCCCchhh------h------hccce---eeCCCCCCCHHHHHHHHHHHhhcc
Q 048682 10 LVVEDS--VIGLQAATRAGMACVITYTSSTAEQD------F------KDAIA---IYPDLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 10 l~igDs--~~di~aA~~AG~~~i~v~~~~~~~~~------~------~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~ 71 (75)
+++..- +.|++..++.|.++|.-..+...... . .+-.+ -+. ..+++.+.+..+.+.+.+.+
T Consensus 9 ~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALESLP 86 (110)
T ss_dssp EEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHHTTT
T ss_pred eEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHHhCC
Confidence 444443 57999999999999866544322110 0 01011 122 24577777777766666543
No 260
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=35.12 E-value=82 Score=24.23 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=38.5
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHH
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNL 67 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 67 (75)
.++=||--.-=+.||+++|+++|.++..... +...-+..+-+.++-...+..+.++..+
T Consensus 838 kVLpiGGiKEK~iAA~Rsg~k~ii~P~~N~~-D~~elp~~vkegLev~~a~~yedv~~~a 896 (906)
T KOG2004|consen 838 KVLPVGGIKEKTIAARRSGVKTIIFPEANRR-DFEELPENVKEGLEVHFAETYEDVFEAA 896 (906)
T ss_pred ceeccCchHHHHHHHHhcCCeEEEccccchh-hHHhhhhhhhccceEEeHHHHHHHHHHH
Confidence 4566676667789999999999988765432 2223455566666655566666665544
No 261
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=35.05 E-value=38 Score=23.32 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=35.3
Q ss_pred HhHHHHHHcCCeEEEEcCCCCch--hhh-h--ccceeeCCCCCCCHHHHHHHHHHHhhccCCC
Q 048682 17 IGLQAATRAGMACVITYTSSTAE--QDF-K--DAIAIYPDLSNVRLKDLELLLQNLQQLNLPN 74 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~~~~--~~~-~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 74 (75)
.=+.+|+.-|.+|++|....... ..+ . .-..++++|.++.-+.+++-+...++.-+|+
T Consensus 30 ~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l~~~n~i~iPh 92 (366)
T PRK13277 30 DVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDELREENAIFVPN 92 (366)
T ss_pred HHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHHHHCCeEEecC
Confidence 34578999999999887544221 123 1 2235678888865455555555555554554
No 262
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.04 E-value=25 Score=20.62 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=7.3
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
+.+++|||.+
T Consensus 1 ~iv~~GDSit 10 (177)
T cd01844 1 PWVFYGTSIS 10 (177)
T ss_pred CEEEEeCchh
Confidence 3678999953
No 263
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=34.89 E-value=35 Score=24.12 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=28.8
Q ss_pred hHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhcc
Q 048682 18 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 71 (75)
=|++-+++|.++||+.++..........-+.-..|.++ +..+..+++-.++.+
T Consensus 332 li~aV~~~g~~vvW~cDPMHGNT~~~~~G~KTR~f~~i-~~Ev~~ff~ih~~~g 384 (439)
T PF01474_consen 332 LIEAVQAAGHPVVWSCDPMHGNTITTSSGYKTRHFDDI-LAEVRGFFEIHRAEG 384 (439)
T ss_dssp HHHHHHTTT---EEEE-TSTTSEEE-TTSSEEEBHHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCceEEeccCCCCCceECCCCccCCcHHHH-HHHHHHHHHHHHHcC
Confidence 37888999999999988754322222222334555556 666666666555544
No 264
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=34.56 E-value=57 Score=20.76 Aligned_cols=24 Identities=21% Similarity=0.100 Sum_probs=18.9
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
..+++|+|.. ..+.|++||+..|+
T Consensus 71 ~kV~Vfa~~~-~~~~Ak~aGa~~vg 94 (227)
T TIGR01169 71 VRVAVFAKGE-KAEEAKAAGADYVG 94 (227)
T ss_pred cEEEEEcCch-hHHHHHHcCCCEeC
Confidence 4678888864 68889999998664
No 265
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.39 E-value=69 Score=19.10 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCcEEEEecCHH------h----HHHHHHcCCeEEEEcCCCCchhhh------hccceeeCCCCCCCHH
Q 048682 6 EKDCLVVEDSVI------G----LQAATRAGMACVITYTSSTAEQDF------KDAIAIYPDLSNVRLK 58 (75)
Q Consensus 6 p~~~l~igDs~~------d----i~aA~~AG~~~i~v~~~~~~~~~~------~~~~~~~~~~~~l~~~ 58 (75)
+.-+|++-|..+ + ++.++++|+....|.-+......+ ....+..+++.++.+.
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~~~~~~l~~~ 178 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYRENFAELLWS 178 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhhcchhhhccc
Confidence 345677777743 1 455778898865554333222222 1223566777666543
No 266
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=34.39 E-value=65 Score=22.64 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=21.6
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||=...|+.||..| |.+++.+-
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence 689999999999887555 88888764
No 267
>PRK13937 phosphoheptose isomerase; Provisional
Probab=34.27 E-value=1.1e+02 Score=18.52 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.1
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.-++.|++.|+++|++.+..
T Consensus 124 ~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 124 AALEKARELGMKTIGLTGRD 143 (188)
T ss_pred HHHHHHHHCCCeEEEEeCCC
Confidence 46778888899999998654
No 268
>PRK07206 hypothetical protein; Provisional
Probab=34.23 E-value=1.5e+02 Score=20.02 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred CcEEEEecCHHh---HHHHHHcCCeEEEEcCC
Q 048682 7 KDCLVVEDSVIG---LQAATRAGMACVITYTS 35 (75)
Q Consensus 7 ~~~l~igDs~~d---i~aA~~AG~~~i~v~~~ 35 (75)
+..+++|=...+ ++++++.|.+++.+...
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEEcC
Confidence 346677665555 67889999999988643
No 269
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.16 E-value=64 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.8
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||=...|+.||.+| |.+++.|.
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lie 38 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVC 38 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEe
Confidence 689999999999888655 88888774
No 270
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=33.97 E-value=1.3e+02 Score=21.78 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=27.3
Q ss_pred CCCCcEEEEecCH----HhHHHHHHcCCeEEEEcCCCC
Q 048682 4 ISEKDCLVVEDSV----IGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 4 ~~p~~~l~igDs~----~di~aA~~AG~~~i~v~~~~~ 37 (75)
.+...++|+-|.. ..|+.|.++|+++|..+.|.-
T Consensus 450 ~~~~gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGSi 487 (513)
T PRK00881 450 LDLKGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGSI 487 (513)
T ss_pred cCcCCeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCCC
Confidence 3346788888885 478999999999999998853
No 271
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=33.77 E-value=54 Score=23.65 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
-++|||... ...|.++|+..+.+..+
T Consensus 157 ~~vvG~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 157 EAVVGAGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred CEEEcCchH-HHHHHHhCCceEEecCH
Confidence 468899765 88999999999988643
No 272
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.74 E-value=94 Score=17.60 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.9
Q ss_pred EEecC--HHhHHHHHHcCCeEEEEcCC
Q 048682 11 VVEDS--VIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 11 ~igDs--~~di~aA~~AG~~~i~v~~~ 35 (75)
+=||+ ..-++.+++-|.+++.+.+.
T Consensus 106 vSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 106 VSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EECCccHHHHHHHHHHcCCEEEEEccC
Confidence 44787 46788999999999888776
No 273
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=33.49 E-value=67 Score=23.51 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=22.3
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
++|+||-...|+.||.+| |.+++.|.-
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK 81 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITK 81 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEc
Confidence 689999999999888665 788887753
No 274
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=33.17 E-value=26 Score=27.20 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.3
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
-++|.||..||+-|-+.|.+-+..+....
T Consensus 808 ~TLMCGDGTNDVGALK~AhVGVALL~~~~ 836 (1160)
T KOG0209|consen 808 VTLMCGDGTNDVGALKQAHVGVALLNNPE 836 (1160)
T ss_pred EEEEecCCCcchhhhhhcccceehhcCCh
Confidence 47999999999999999998876665544
No 275
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.15 E-value=43 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.2
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEE
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
-+.|+||..||.-|=++|.+-...
T Consensus 640 vVamtGDGvNDapALk~ADVGIam 663 (917)
T COG0474 640 VVAMTGDGVNDAPALKAADVGIAM 663 (917)
T ss_pred EEEEeCCCchhHHHHHhcCccEEe
Confidence 366999999999999999976533
No 276
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=33.09 E-value=77 Score=21.61 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=22.8
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
-++++||-.+.|+.+|..+ |.+++.+..
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcC
Confidence 3789999999999999876 777766653
No 277
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=32.76 E-value=70 Score=23.27 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.2
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++|+||-...|+.||.+| |.+++.+.
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lve 59 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYKTACIS 59 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEe
Confidence 699999999999998765 88888774
No 278
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.69 E-value=30 Score=20.51 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=8.1
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
..++||||..
T Consensus 1 ril~iGDS~~ 10 (200)
T cd01829 1 RVLVIGDSLA 10 (200)
T ss_pred CEEEEechHH
Confidence 3689999975
No 279
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=32.50 E-value=77 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.3
Q ss_pred cEEEEecCHHhHHHHHHc-----CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-----GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-----G~~~i~v~ 33 (75)
++|+||=...|+.||..| |.+++.+.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lie 43 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVE 43 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 799999999999988765 88888775
No 280
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.44 E-value=27 Score=20.58 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=9.3
Q ss_pred CCcEEEEecCHH
Q 048682 6 EKDCLVVEDSVI 17 (75)
Q Consensus 6 p~~~l~igDs~~ 17 (75)
|-+.+++|||..
T Consensus 2 ~~~i~~~GDSit 13 (191)
T cd01836 2 PLRLLVLGDSTA 13 (191)
T ss_pred CeEEEEEecccc
Confidence 457889999973
No 281
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=32.31 E-value=20 Score=22.67 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.7
Q ss_pred EEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 9 CLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 9 ~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
.++|||..+|+..++.+ +-+.+-+++
T Consensus 195 i~~iGD~~~D~~~~~~~~~~~~r~f~lPN 223 (229)
T PF03767_consen 195 IANIGDQLSDFSGAKTAGARAERWFKLPN 223 (229)
T ss_dssp EEEEESSGGGCHCTHHHHHHHTTEEE-TT
T ss_pred EEEeCCCHHHhhcccccccccceEEEcCC
Confidence 35789999988884433 234454444
No 282
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=32.14 E-value=2.2e+02 Score=21.34 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=27.9
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceee--CCCCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY--PDLSNV 55 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l 55 (75)
-+.|+||..||.-|=++|.+- |++..+ ..-....++.+. +++..+
T Consensus 505 ~VaMtGDGvNDAPALa~ADVG-IAMgsG--TdvAkeAADiVLldd~ls~I 551 (673)
T PRK14010 505 IVAMTGDGTNDAPALAEANVG-LAMNSG--TMSAKEAANLIDLDSNPTKL 551 (673)
T ss_pred EEEEECCChhhHHHHHhCCEE-EEeCCC--CHHHHHhCCEEEcCCCHHHH
Confidence 367999999999999999864 333332 222234455554 344444
No 283
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=31.88 E-value=33 Score=20.87 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.2
Q ss_pred CCCcEEEEecCHHh
Q 048682 5 SEKDCLVVEDSVIG 18 (75)
Q Consensus 5 ~p~~~l~igDs~~d 18 (75)
.+.+.+++|||...
T Consensus 31 ~~~~iv~lGDSit~ 44 (214)
T cd01820 31 KEPDVVFIGDSITQ 44 (214)
T ss_pred CCCCEEEECchHhh
Confidence 46789999999854
No 284
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.06 E-value=79 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.1
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++++||=...|+.||..| |.+++.+.
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~~Vilie 65 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGYNVKVFC 65 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEe
Confidence 689999999999888665 88888774
No 285
>PRK08401 L-aspartate oxidase; Provisional
Probab=30.59 E-value=88 Score=21.71 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
.++++||=...|+.||..| |.+++.+.-
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek 32 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGP 32 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999888665 888877653
No 286
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=30.49 E-value=27 Score=24.24 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=11.6
Q ss_pred CCcEEEEecCHHhH
Q 048682 6 EKDCLVVEDSVIGL 19 (75)
Q Consensus 6 p~~~l~igDs~~di 19 (75)
....++||||.+|.
T Consensus 142 ~~ai~vFGDSlsDt 155 (408)
T PRK15381 142 ITRLVFFGDSLSDS 155 (408)
T ss_pred CCeEEEeCCccccC
Confidence 45688999999988
No 287
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=30.46 E-value=38 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
.+.+.+.|=|..++.=+.+-||.+|++..|.
T Consensus 126 ~~~S~l~gktLg~l~L~t~tGvrVIAIRRG~ 156 (204)
T COG3273 126 EKGSELAGKTLGELDLATNTGVRVIAIRRGE 156 (204)
T ss_pred cCCCeecccchhhhccccccceEEEEEecCC
Confidence 3556788899999999999999999998765
No 288
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=30.35 E-value=92 Score=20.23 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=19.9
Q ss_pred EEEecCH-HhHHHHHHcCCeEEEEcC
Q 048682 10 LVVEDSV-IGLQAATRAGMACVITYT 34 (75)
Q Consensus 10 l~igDs~-~di~aA~~AG~~~i~v~~ 34 (75)
++|.|.. ....+|+..|+++|.+..
T Consensus 96 lVi~d~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 96 LIISDFEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred EEEECCchHHHHHHHhcCCCEEEEec
Confidence 5666764 578899999999998864
No 289
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=30.29 E-value=96 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.0
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
=+.++||=++.|+.+|..+ |.+++.+-
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE 33 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVE 33 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 3689999999999999766 77776664
No 290
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=30.27 E-value=1.6e+02 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.9
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~ 34 (75)
+++++|-..+.-|...|.++|.+..
T Consensus 277 ~vv~~Sg~~~~EA~a~g~PvI~~~~ 301 (365)
T TIGR00236 277 LILTDSGGVQEEAPSLGKPVLVLRD 301 (365)
T ss_pred EEEECChhHHHHHHHcCCCEEECCC
Confidence 6788997778889999999998753
No 291
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.64 E-value=84 Score=18.59 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=22.1
Q ss_pred CHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeC
Q 048682 15 SVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP 50 (75)
Q Consensus 15 s~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~ 50 (75)
...=++.|++.|+++|++....... ....++..+.
T Consensus 117 ~i~~~~~ak~~Ga~vI~IT~~~~s~-La~~aD~~l~ 151 (177)
T cd05006 117 VLKALEAAKERGMKTIALTGRDGGK-LLELADIEIH 151 (177)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCc-hhhhCCEEEE
Confidence 3456788899999999998654322 1233455443
No 292
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=29.46 E-value=57 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCCCCCCcEEEEecCHHhHHHHHHcC
Q 048682 1 RLGISEKDCLVVEDSVIGLQAATRAG 26 (75)
Q Consensus 1 ~l~~~p~~~l~igDs~~di~aA~~AG 26 (75)
++++++..+++.||..-||.|+.-.=
T Consensus 318 ~~~i~~~d~l~~GDGSGGita~lLR~ 343 (675)
T PF14314_consen 318 NLNIKYRDALCGGDGSGGITACLLRM 343 (675)
T ss_pred hcCCCcceeEEEecCchHHHHHHHHh
Confidence 36788999999999999998876443
No 293
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.45 E-value=90 Score=22.14 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=22.6
Q ss_pred CcEEEEecCHHhHHHHHHc--CCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRA--GMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A--G~~~i~v~~ 34 (75)
-++|+||=...|+.||..| |.+++.+.-
T Consensus 8 ~DVlVVG~G~AGl~AAi~A~~G~~VilleK 37 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEAERGKNVVIVSK 37 (543)
T ss_pred cCEEEECccHHHHHHHHHHhcCCCEEEEEc
Confidence 3689999999999988876 777777643
No 294
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=29.37 E-value=75 Score=22.41 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=23.4
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~ 35 (75)
.-++|||..---.+|++-.|+++-|...
T Consensus 426 ~yvvIgdG~eee~aAK~ln~PfwrI~~h 453 (468)
T KOG3107|consen 426 VYVVIGDGVEEEQAAKALNMPFWRISSH 453 (468)
T ss_pred EEEEecCcHHHHHHHHhhCCceEeeccC
Confidence 3468999999999999999999877543
No 295
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.33 E-value=1.9e+02 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCcEEEEecCHH--------------hHHHHHHcCCeEEEEcCC
Q 048682 6 EKDCLVVEDSVI--------------GLQAATRAGMACVITYTS 35 (75)
Q Consensus 6 p~~~l~igDs~~--------------di~aA~~AG~~~i~v~~~ 35 (75)
....+++|-++. -++++++.|..+|.+...
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~n 597 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCN 597 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCC
Confidence 356778887654 389999999999988643
No 296
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=29.32 E-value=98 Score=21.99 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred CcEEEEecCHHhHHHHH---HcCCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAAT---RAGMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~---~AG~~~i~v~ 33 (75)
-++|+||=...|+.||. ++|.+++.+.
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlE 34 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLD 34 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999998875 5689888774
No 297
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=29.24 E-value=32 Score=20.03 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=6.4
Q ss_pred EEEEecCH
Q 048682 9 CLVVEDSV 16 (75)
Q Consensus 9 ~l~igDs~ 16 (75)
.++||||.
T Consensus 2 i~~iGDSi 9 (169)
T cd01831 2 IEFIGDSI 9 (169)
T ss_pred EEEEeccc
Confidence 57889986
No 298
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=29.10 E-value=48 Score=22.43 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCCCCCcEEEEecCHHh
Q 048682 2 LGISEKDCLVVEDSVIG 18 (75)
Q Consensus 2 l~~~p~~~l~igDs~~d 18 (75)
.++++++|++.|||.-|
T Consensus 161 ~~~D~~rv~l~GDSaGG 177 (336)
T KOG1515|consen 161 LGADPSRVFLAGDSAGG 177 (336)
T ss_pred hCCCcccEEEEccCccH
Confidence 57899999999999743
No 299
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=28.93 E-value=37 Score=21.00 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=8.9
Q ss_pred CCcEEEEecCHH
Q 048682 6 EKDCLVVEDSVI 17 (75)
Q Consensus 6 p~~~l~igDs~~ 17 (75)
-...++||||..
T Consensus 15 ~k~i~fiGDS~~ 26 (263)
T PF13839_consen 15 NKRIVFIGDSTT 26 (263)
T ss_pred CCEEEEEechhh
Confidence 456789999963
No 300
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=28.88 E-value=85 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.1
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~~ 34 (75)
++++||-.+.|++||.+ .|.++..+..
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~ 35 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTH 35 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEec
Confidence 68999999999999854 4788887753
No 301
>PRK11440 putative hydrolase; Provisional
Probab=28.63 E-value=72 Score=19.13 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=13.2
Q ss_pred HHHHHHcCCeEEEEcC
Q 048682 19 LQAATRAGMACVITYT 34 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~ 34 (75)
+++|+++|+++|.+..
T Consensus 41 ~~~ar~~g~pVi~~~~ 56 (188)
T PRK11440 41 AAKFRASGSPVVLVRV 56 (188)
T ss_pred HHHHHHcCCcEEEEec
Confidence 5688999999998764
No 302
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=28.32 E-value=2.1e+02 Score=19.97 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.0
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
+.||=..+.+-+|.+.|.++|++.+...
T Consensus 288 l~Vg~R~HsaI~al~~g~p~i~i~Y~~K 315 (385)
T COG2327 288 LIVGMRLHSAIMALAFGVPAIAIAYDPK 315 (385)
T ss_pred eEEeehhHHHHHHHhcCCCeEEEeecHH
Confidence 4588888999999999999999987553
No 303
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.07 E-value=93 Score=22.29 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.2
Q ss_pred CcEEEEecCHHhHHHHHHc---C---CeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---G---MACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G---~~~i~v~ 33 (75)
-++++||=...|+.||.+| | .+++.+.
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lle 38 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVS 38 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 3689999999999998776 6 7777764
No 304
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=28.07 E-value=1.1e+02 Score=21.03 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=21.8
Q ss_pred CcEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
-++|+||=...|+.+|.. .|.+++.+-
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 368999999999988755 588888775
No 305
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=28.06 E-value=95 Score=22.42 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=22.4
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++|+||=...|+.||..| |.+++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlE 41 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVE 41 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEE
Confidence 3699999999999887655 99988774
No 306
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.06 E-value=1.5e+02 Score=18.05 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEecCH--HhHHHHHHcCCeEEEEcCCC
Q 048682 9 CLVVEDSV--IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 9 ~l~igDs~--~di~aA~~AG~~~i~v~~~~ 36 (75)
|++=|||- .=++..++.|.+++++....
T Consensus 110 vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 110 ALVTRDADFLPVINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEeccHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 56778985 45666999999999887543
No 307
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=27.93 E-value=84 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=18.7
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVI 31 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~ 31 (75)
-.+++|.|.. ..+.|++||+..++
T Consensus 72 ~kV~Vfa~~~-~~~eAk~aGad~vg 95 (229)
T CHL00129 72 IRIAVLTNEE-KITEAKNAGADIVG 95 (229)
T ss_pred cEEEEECChH-hHHHHHHcCCCEeC
Confidence 4678898875 57789999998654
No 308
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=27.80 E-value=1.2e+02 Score=20.13 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
++++||-.+.|+.+|.. .|.+++.+-
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE 29 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIE 29 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEc
Confidence 47899999999999864 488877775
No 309
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=27.79 E-value=90 Score=22.01 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.6
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++|+||=. .|+.+|..| |.+++.|-
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlE 36 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVE 36 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEe
Confidence 378999999 999887766 99988775
No 310
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=27.51 E-value=1.1e+02 Score=20.48 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=36.3
Q ss_pred CCCCcEEEEecCHH--------hHHHHHHcC-CeEEEEcCCCCch--hhhhccceeeCCCCCCCHHHHHH
Q 048682 4 ISEKDCLVVEDSVI--------GLQAATRAG-MACVITYTSSTAE--QDFKDAIAIYPDLSNVRLKDLEL 62 (75)
Q Consensus 4 ~~p~~~l~igDs~~--------di~aA~~AG-~~~i~v~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~ 62 (75)
..|..+-+.++... =|++.+.-| ++++.|.++.... ..+..++.++-+++..+...+.+
T Consensus 78 ~~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~~~dql~~sLdA~~~~~~~~ 147 (296)
T COG0731 78 TEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELKLPDQLYVSLDAPDEKTFRR 147 (296)
T ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhccCCEEEEEeccCCHHHHHH
Confidence 35555666666531 368889999 6778888776522 22345777777776655444443
No 311
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=27.33 E-value=96 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.5
Q ss_pred cEEEEecCHHhHHHHHHc-----CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-----GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-----G~~~i~v~ 33 (75)
++|+||-...|+.||.+| |.+++.+.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lle 36 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALIS 36 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEE
Confidence 689999999999999887 36777764
No 312
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=27.31 E-value=49 Score=20.28 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=28.4
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 54 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 54 (75)
.++||+...+. +..|....+......-.+....++.++.+-..
T Consensus 48 ~~~~d~~~~~~--k~~gl~id~y~f~psl~e~I~~AdlVIsHAGa 90 (170)
T KOG3349|consen 48 PFFGDPIDLIR--KNGGLTIDGYDFSPSLTEDIRSADLVISHAGA 90 (170)
T ss_pred cCCCCHHHhhc--ccCCeEEEEEecCccHHHHHhhccEEEecCCc
Confidence 56677766665 88888877776554434455667877776543
No 313
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=27.19 E-value=81 Score=21.59 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=18.2
Q ss_pred CCCcEEEEecCHHhHHHHHHc
Q 048682 5 SEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~A 25 (75)
+..+.++||++.-||..|.+.
T Consensus 321 d~hn~~~~g~~~~~~~~a~~~ 341 (422)
T cd01295 321 DSHNIIVIGTNDEDMALAVNR 341 (422)
T ss_pred CcCcEEEEECCHHHHHHHHHH
Confidence 567899999999999998764
No 314
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.12 E-value=31 Score=20.12 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=8.1
Q ss_pred cEEEEecCHHh
Q 048682 8 DCLVVEDSVIG 18 (75)
Q Consensus 8 ~~l~igDs~~d 18 (75)
+.++||||...
T Consensus 1 ~iv~~GDS~t~ 11 (189)
T cd01825 1 RIAQLGDSHIA 11 (189)
T ss_pred CeeEecCcccc
Confidence 36788999753
No 315
>PRK06847 hypothetical protein; Provisional
Probab=27.04 E-value=1.3e+02 Score=19.72 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCCcEEEEecCHHhHHHHH---HcCCeEEEEc
Q 048682 5 SEKDCLVVEDSVIGLQAAT---RAGMACVITY 33 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~---~AG~~~i~v~ 33 (75)
.+.++++||=.+.|+.+|. +.|++++.+-
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 3568999999999999984 4588876663
No 316
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.99 E-value=99 Score=18.25 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.4
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.=++.|++.|+++|++....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred HHHHHHHHCCCeEEEEECCC
Confidence 34556899999999997644
No 317
>PF13045 DUF3905: Protein of unknown function (DUF3905)
Probab=26.99 E-value=28 Score=18.71 Aligned_cols=10 Identities=30% Similarity=0.145 Sum_probs=7.5
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
--|+||||.+
T Consensus 33 ~GVvIGDs~Y 42 (84)
T PF13045_consen 33 FGVVIGDSDY 42 (84)
T ss_pred cCeEeccccc
Confidence 4578999874
No 318
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.92 E-value=1.3e+02 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=22.3
Q ss_pred CcEEEEecCHHhHH---HHHHcCCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQ---AATRAGMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~---aA~~AG~~~i~v~ 33 (75)
...+++|.+..++. +|++.|+.++.+.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~ 32 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIY 32 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999987766 8899999999885
No 319
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=26.61 E-value=1.3e+02 Score=19.52 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+++|.=.+.++++|+..|.+.|=+.+|.
T Consensus 128 SLFiD~d~~qi~aa~~~gA~~IELhTG~ 155 (243)
T COG0854 128 SLFIDPDPEQIEAAAEVGAPRIELHTGP 155 (243)
T ss_pred EEEeCCCHHHHHHHHHhCCCEEEEeccc
Confidence 6778777899999999999999776553
No 320
>PRK10262 thioredoxin reductase; Provisional
Probab=26.58 E-value=78 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCcEEEEecCHHhHHHHHHc---CCeEEEE
Q 048682 5 SEKDCLVVEDSVIGLQAATRA---GMACVIT 32 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~A---G~~~i~v 32 (75)
...++++||=.+.|+.+|..+ |.+++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~i 35 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLI 35 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence 357899999999999998754 6666555
No 321
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=26.55 E-value=1e+02 Score=22.29 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.7
Q ss_pred cEEEEecCHHhHHHHHHc-----CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-----GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-----G~~~i~v~ 33 (75)
++++||-...|+.||..| |.+++.|.
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lve 35 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALIS 35 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEE
Confidence 689999999999999887 47777764
No 322
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=26.52 E-value=36 Score=19.84 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=6.7
Q ss_pred EEEEecCHH
Q 048682 9 CLVVEDSVI 17 (75)
Q Consensus 9 ~l~igDs~~ 17 (75)
.+++|||.+
T Consensus 2 i~~~GDSit 10 (185)
T cd01832 2 YVALGDSIT 10 (185)
T ss_pred eeEecchhh
Confidence 578888874
No 323
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.47 E-value=89 Score=15.77 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=19.0
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
++++||-+..+++.|.. .|..+..+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEe
Confidence 46899999999998865 466655553
No 324
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.43 E-value=1e+02 Score=18.24 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHhHHHHHHcCCeEEEEcCCCC
Q 048682 16 VIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~~ 37 (75)
..=++.|++.|+++|++.....
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 3456778999999999986543
No 325
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.33 E-value=46 Score=19.09 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=15.3
Q ss_pred hHHHHHHcCCeEEEEcCC
Q 048682 18 GLQAATRAGMACVITYTS 35 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~ 35 (75)
=++.|++.|++++++...
T Consensus 21 ~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 21 YVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp HHHHHHHTTESEEEEEEE
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 368899999999999865
No 326
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=26.31 E-value=74 Score=23.82 Aligned_cols=29 Identities=31% Similarity=0.147 Sum_probs=23.4
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
.++-||.=..=+++|+++|+++|.++-..
T Consensus 613 ~VlpVGGlkEKl~aA~raGaK~VLiP~~N 641 (675)
T TIGR02653 613 VINPVQDLAGSLQLAMDSGAKRVLIPMSS 641 (675)
T ss_pred EEEecCCHHHHHHHHHHCCCCEEEccHHH
Confidence 45567777777999999999999997554
No 327
>PRK06175 L-aspartate oxidase; Provisional
Probab=26.26 E-value=1.1e+02 Score=21.11 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.4
Q ss_pred cEEEEecCHHhHHHHHHc--CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA--GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A--G~~~i~v~ 33 (75)
++|+||=...|+.||.+| |.+++.|.
T Consensus 6 DVvVVG~G~AGl~AA~~a~~G~~V~lle 33 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLRKDLKILMVS 33 (433)
T ss_pred cEEEECchHHHHHHHHHhccCCCEEEEe
Confidence 689999999999888765 67777764
No 328
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=26.18 E-value=95 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCCcEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 5 SEKDCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
.+.++++||.+..|+.+|.. .|..+..+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie 48 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD 48 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 46789999999999988765 456666554
No 329
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=26.08 E-value=84 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.2
Q ss_pred CCCcEEEEecCHHhHHHHHHc
Q 048682 5 SEKDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~A 25 (75)
+..+.++||++..||..|.+.
T Consensus 442 dshniivvG~~~~dm~~A~~~ 462 (552)
T TIGR01178 442 DSHNIIAVGSNDEDLALAVNK 462 (552)
T ss_pred CcCcEEEEECCHHHHHHHHHH
Confidence 567999999999999998764
No 330
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=25.89 E-value=55 Score=22.91 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=20.5
Q ss_pred CCCCCcEEEEecCH-----HhHHHHHHcCCeEEEEcCC
Q 048682 3 GISEKDCLVVEDSV-----IGLQAATRAGMACVITYTS 35 (75)
Q Consensus 3 ~~~p~~~l~igDs~-----~di~aA~~AG~~~i~v~~~ 35 (75)
++.|++|+.|||-. ||.+ |+.++ .++||..+
T Consensus 366 ~i~~~~tLHVGDQF~s~GaNDfk-aR~a~-~t~WIasP 401 (408)
T PF06437_consen 366 GIKPSETLHVGDQFLSAGANDFK-ARLAC-TTAWIASP 401 (408)
T ss_pred CCCccceeeehhhhhccCCcchh-hhhhc-eeeEecCH
Confidence 68899999999975 3443 34444 35666654
No 331
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=25.88 E-value=64 Score=20.19 Aligned_cols=29 Identities=38% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEEecCHHhHHHHHHcCCeEEEEcCCC
Q 048682 8 DCLVVEDSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i~v~~~~ 36 (75)
+..-||.=..=+++|+++|++.+.++...
T Consensus 144 ~V~~Vggl~eKl~~A~~~G~k~vliP~~n 172 (204)
T PF05362_consen 144 EVLPVGGLKEKLQAAKRAGAKRVLIPASN 172 (204)
T ss_dssp BEE--STHHHHHHHHHHTT-SEEEEEGGG
T ss_pred ceecccchhHHHHHHHHcCCeEEEEcHHH
Confidence 44556665566899999999999998764
No 332
>PRK08071 L-aspartate oxidase; Provisional
Probab=25.83 E-value=1.4e+02 Score=21.17 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCcEEEEecCHHhHHHHHHc--CCeEEEEc
Q 048682 6 EKDCLVVEDSVIGLQAATRA--GMACVITY 33 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~A--G~~~i~v~ 33 (75)
..++|+||=...|+.||.+| |.+++.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lve 32 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIIT 32 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEe
Confidence 45789999999999999877 67777664
No 333
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.82 E-value=37 Score=20.46 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=7.4
Q ss_pred EEEEecCHH
Q 048682 9 CLVVEDSVI 17 (75)
Q Consensus 9 ~l~igDs~~ 17 (75)
++++|||.+
T Consensus 2 iv~~GDSiT 10 (204)
T cd01830 2 VVALGDSIT 10 (204)
T ss_pred EEEEecccc
Confidence 578999986
No 334
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=25.81 E-value=1.4e+02 Score=19.11 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=21.9
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++++||=.+.|+.+|..+ |.+++.+-
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liE 55 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFE 55 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEe
Confidence 4789999999999998754 77777664
No 335
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=25.74 E-value=86 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 9 CLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 9 ~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
+++||=...|+.||..| |.+++.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~Ville 28 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFS 28 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEE
Confidence 47899999999888776 88888764
No 336
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=25.70 E-value=74 Score=18.63 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.0
Q ss_pred cEEEEecCHHhHHHHHHcC---CeEEEE
Q 048682 8 DCLVVEDSVIGLQAATRAG---MACVIT 32 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG---~~~i~v 32 (75)
++++||=++.|+.+|+.+. .+++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 4789999999999998754 566666
No 337
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.57 E-value=73 Score=19.92 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.6
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
++++||-++.|+.+|.. .|+++..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie 30 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIE 30 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 57899999999999876 467766664
No 338
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=25.56 E-value=1.6e+02 Score=21.19 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCCCcEEEEecCHH----hHHHHHHcCCeEEEEcCCC
Q 048682 3 GISEKDCLVVEDSVI----GLQAATRAGMACVITYTSS 36 (75)
Q Consensus 3 ~~~p~~~l~igDs~~----di~aA~~AG~~~i~v~~~~ 36 (75)
|-..+-+++|||..- |++++..-|+.+..|-++.
T Consensus 219 gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgP 256 (505)
T PF10113_consen 219 GKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGP 256 (505)
T ss_pred CCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 445577889999965 5556666667777676554
No 339
>PLN02268 probable polyamine oxidase
Probab=25.53 E-value=1.4e+02 Score=20.17 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEecCHHhHHHH---HHcCCeEEEE
Q 048682 8 DCLVVEDSVIGLQAA---TRAGMACVIT 32 (75)
Q Consensus 8 ~~l~igDs~~di~aA---~~AG~~~i~v 32 (75)
++++||=..+|+.|| +++|.++..+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vl 29 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLL 29 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 578999999999999 5677776554
No 340
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=25.45 E-value=1.5e+02 Score=22.15 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=36.2
Q ss_pred EEEEecCH-----HhHHHHHHcCCeEEEEcCCCCchh-hhhccceeeC-CCCCCCHHHHHHHHHHHhhcc
Q 048682 9 CLVVEDSV-----IGLQAATRAGMACVITYTSSTAEQ-DFKDAIAIYP-DLSNVRLKDLELLLQNLQQLN 71 (75)
Q Consensus 9 ~l~igDs~-----~di~aA~~AG~~~i~v~~~~~~~~-~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~ 71 (75)
.+.+.|.+ .=++..+++|++++++.+...... .... ..-++ -+.+.+++.=.++.+.+++.+
T Consensus 439 ~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~-elGId~v~A~~~PedK~~iV~~lQ~~G 507 (679)
T PRK01122 439 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAA-EAGVDDFLAEATPEDKLALIRQEQAEG 507 (679)
T ss_pred EEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH-HcCCcEEEccCCHHHHHHHHHHHHHcC
Confidence 34555554 356678899999998876543221 1111 11122 245667887777777777654
No 341
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.44 E-value=46 Score=19.27 Aligned_cols=11 Identities=9% Similarity=0.299 Sum_probs=8.6
Q ss_pred cEEEEecCHHh
Q 048682 8 DCLVVEDSVIG 18 (75)
Q Consensus 8 ~~l~igDs~~d 18 (75)
+.+++|||...
T Consensus 3 ~v~~~GDSit~ 13 (191)
T cd01834 3 RIVFIGNSITD 13 (191)
T ss_pred EEEEeCCChhh
Confidence 57899999754
No 342
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.37 E-value=82 Score=19.99 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=17.2
Q ss_pred cCHHhHHHHHHcCCeEEEEcCC
Q 048682 14 DSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 14 Ds~~di~aA~~AG~~~i~v~~~ 35 (75)
++..=+++|++.|+++|++...
T Consensus 188 ~~~g~~~aa~~~g~~~IG~d~d 209 (258)
T cd06353 188 DSPGVIQAAEEKGVYAIGYVSD 209 (258)
T ss_pred CChHHHHHHHHhCCEEEeeccc
Confidence 5556678999999999998643
No 343
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.22 E-value=2.5e+02 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.5
Q ss_pred CcEEEEecCHH--------------hHHHHHHcCCeEEEEcC
Q 048682 7 KDCLVVEDSVI--------------GLQAATRAGMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~--------------di~aA~~AG~~~i~v~~ 34 (75)
..++++|-+++ -++++++.|..+|.+..
T Consensus 555 ~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~ 596 (1050)
T TIGR01369 555 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596 (1050)
T ss_pred ceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEec
Confidence 46788887764 37899999999999865
No 344
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.18 E-value=2e+02 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.8
Q ss_pred EecCHHhHHHHHHcCCeEEEEcC
Q 048682 12 VEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 12 igDs~~di~aA~~AG~~~i~v~~ 34 (75)
+-+...|++.|+++|++.|.+.-
T Consensus 73 ~~~~~~~~~~A~~~g~~~i~i~~ 95 (280)
T cd07945 73 FVDGDKSVDWIKSAGAKVLNLLT 95 (280)
T ss_pred ecCcHHHHHHHHHCCCCEEEEEE
Confidence 44778899999999999876653
No 345
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.06 E-value=1.5e+02 Score=17.53 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.2
Q ss_pred EecCHHhHHHHH-HcCCeEEEEc
Q 048682 12 VEDSVIGLQAAT-RAGMACVITY 33 (75)
Q Consensus 12 igDs~~di~aA~-~AG~~~i~v~ 33 (75)
+|.+.+++..|. ..+++.+.+.
T Consensus 69 ~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 69 LGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999 9999998776
No 346
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=24.99 E-value=37 Score=19.03 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=4.9
Q ss_pred EEEecCHH
Q 048682 10 LVVEDSVI 17 (75)
Q Consensus 10 l~igDs~~ 17 (75)
++||||..
T Consensus 1 v~~GDS~t 8 (179)
T PF13472_consen 1 VFLGDSIT 8 (179)
T ss_dssp EEEESHHH
T ss_pred CEEccccc
Confidence 46777753
No 347
>CHL00067 rps2 ribosomal protein S2
Probab=24.88 E-value=1.4e+02 Score=18.94 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=23.9
Q ss_pred CcEEEEecCH---HhHHHHHHcCCeEEEEcCCCCc
Q 048682 7 KDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 7 ~~~l~igDs~---~di~aA~~AG~~~i~v~~~~~~ 38 (75)
-++++|=|.. .-+.-|...|+++|++.+...+
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4567776765 4578889999999999876543
No 348
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=1.6e+02 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=13.8
Q ss_pred HhHHHHHHcCCeEEEEcC
Q 048682 17 IGLQAATRAGMACVITYT 34 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~ 34 (75)
+=|.||+.+|+..+....
T Consensus 78 ~Li~aAke~~i~F~YAiS 95 (891)
T KOG3698|consen 78 NLIEAAKENNINFVYAIS 95 (891)
T ss_pred HHHHHHHhcCceEEEEcC
Confidence 458899999999875433
No 349
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=24.73 E-value=44 Score=20.11 Aligned_cols=35 Identities=31% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHc---CCeEEEEcCCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRA---GMACVITYTSS 36 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~A---G~~~i~v~~~~ 36 (75)
+|+....+..++|....|..+.+. ....|.+.+|.
T Consensus 31 ~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~ 68 (170)
T cd00885 31 LGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGL 68 (170)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 466777788999999888877653 45555555443
No 350
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=24.67 E-value=39 Score=19.75 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=7.2
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
+.+++|||.+
T Consensus 1 ~i~~~GDSit 10 (199)
T cd01838 1 KIVLFGDSIT 10 (199)
T ss_pred CEEEecCccc
Confidence 3678888873
No 351
>PRK06361 hypothetical protein; Provisional
Probab=24.61 E-value=95 Score=18.93 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHcCCeEEEEcCCC
Q 048682 19 LQAATRAGMACVITYTSS 36 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~ 36 (75)
+++|.+.|++.+++....
T Consensus 16 v~~A~~~Gl~~i~iTDH~ 33 (212)
T PRK06361 16 VRRARVLGYRAIAITDHA 33 (212)
T ss_pred HHHHHHcCCCEEEEecCC
Confidence 678899999999998764
No 352
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=24.56 E-value=16 Score=21.52 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=10.1
Q ss_pred cEEEEecCHHhHHH
Q 048682 8 DCLVVEDSVIGLQA 21 (75)
Q Consensus 8 ~~l~igDs~~di~a 21 (75)
+-+||||+++-++.
T Consensus 105 E~~mFGD~pnSmkk 118 (132)
T PF09432_consen 105 EMLMFGDGPNSMKK 118 (132)
T ss_pred HHHHhcCChHHHHH
Confidence 34689999887653
No 353
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.44 E-value=1e+02 Score=16.66 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCCCCCcEEEEecCHHhHHHH---HHcCCeEEEEcCC
Q 048682 2 LGISEKDCLVVEDSVIGLQAA---TRAGMACVITYTS 35 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA---~~AG~~~i~v~~~ 35 (75)
|++.-..+++||.+.-+...+ .++|.+...+...
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 356678899999998665544 4678777666544
No 354
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=24.31 E-value=1.3e+02 Score=20.45 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=20.4
Q ss_pred cEEEEecCHHhHHHHHH---cC-CeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATR---AG-MACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG-~~~i~v~ 33 (75)
++|+||=...|+.+|.. +| .+++.+-
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEe
Confidence 47899999999988766 47 7777764
No 355
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=24.30 E-value=36 Score=16.90 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=7.0
Q ss_pred EEEEecCH
Q 048682 9 CLVVEDSV 16 (75)
Q Consensus 9 ~l~igDs~ 16 (75)
||.|||+.
T Consensus 39 cigFGDTl 46 (60)
T PF04694_consen 39 CIGFGDTL 46 (60)
T ss_pred EEecchHH
Confidence 88999986
No 356
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.27 E-value=86 Score=17.52 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.7
Q ss_pred HhHHHHHHcCCeEEEEcCC
Q 048682 17 IGLQAATRAGMACVITYTS 35 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~ 35 (75)
.=++++++.|+++|++.+.
T Consensus 16 r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 16 RIIRALRELGIETVAVNSN 34 (110)
T ss_dssp HHHHHHHHTTSEEEEEEEG
T ss_pred HHHHHHHHhCCcceeccCc
Confidence 4578899999999999754
No 357
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=24.25 E-value=75 Score=22.08 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=19.9
Q ss_pred cEEEEecCHHhHHHHHH---cCCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATR---AGMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~---AG~~~i~v~ 33 (75)
++++||-...|.+||.+ .|.++..+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 47899999999998865 588988883
No 358
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=24.22 E-value=1.1e+02 Score=19.27 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=18.6
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
-++.+|+|... .+.|++||+..+..
T Consensus 60 ~kV~v~~~~~~-~~~Ak~aGad~v~~ 84 (214)
T PTZ00225 60 MTVCLLCDLVH-EDIAKKEGVPTMNQ 84 (214)
T ss_pred cEEEEECChHH-HHHHHHCCCCEECH
Confidence 46677777665 67799999996654
No 359
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=24.14 E-value=39 Score=19.43 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=7.6
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
+.+++|||..
T Consensus 2 ~i~~~GDSit 11 (177)
T cd01822 2 TILALGDSLT 11 (177)
T ss_pred eEEEEccccc
Confidence 4678899973
No 360
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=24.13 E-value=2.2e+02 Score=18.84 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHHhhc
Q 048682 19 LQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQQL 70 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 70 (75)
.+||.+.|+..+++-....+. ....+...-+.+..|+.++..+.+.
T Consensus 222 aRAa~AvGvaGlF~EtHpdP~------~A~sDgp~mlpL~~le~ll~~l~~~ 267 (279)
T COG2877 222 ARAAVAVGVAGLFIETHPDPD------NAKSDGPNMLPLDKLEALLEQLKAI 267 (279)
T ss_pred HHHHHHhccceEEEeccCCcc------cCCCCCccccCHHHHHHHHHHHHHH
Confidence 468888898888876543221 1223555566677777777766554
No 361
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=24.10 E-value=1e+02 Score=19.22 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=14.8
Q ss_pred hHHHHHHcCCeEEEEcCCC
Q 048682 18 GLQAATRAGMACVITYTSS 36 (75)
Q Consensus 18 di~aA~~AG~~~i~v~~~~ 36 (75)
=+++|+++|+++|++...+
T Consensus 54 l~~~aR~~g~pVI~~~~~~ 72 (226)
T TIGR03614 54 AVTAARAAGIQVIYFQNGW 72 (226)
T ss_pred HHHHHHHcCCEEEEEeccc
Confidence 3567899999999886543
No 362
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.05 E-value=1.3e+02 Score=16.25 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHhHHHHHHcCCeEEEEcCCCC
Q 048682 16 VIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~~~ 37 (75)
..-++-|++.|+++|.+.....
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTT
T ss_pred hhhhHHHHhcCCeEEEEeCCCC
Confidence 3567889999999999986544
No 363
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.03 E-value=1.3e+02 Score=20.18 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.4
Q ss_pred ecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 13 EDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 13 gDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
|+|..++..|.++|..++++..+..+
T Consensus 85 g~~~~~~~~ai~~GFsSvMiDgS~~~ 110 (286)
T COG0191 85 GASFEDCKQAIRAGFSSVMIDGSHLP 110 (286)
T ss_pred CCCHHHHHHHHhcCCceEEecCCcCC
Confidence 45788899999999999988765543
No 364
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=24.02 E-value=1.5e+02 Score=19.84 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.1
Q ss_pred cEEEEecCHHhHHHHHHc-----CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA-----GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A-----G~~~i~v~ 33 (75)
++++||-.+.|...|... |.+++.|-
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid 31 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLID 31 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEc
Confidence 578999999999999888 78777773
No 365
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.02 E-value=43 Score=19.59 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=7.2
Q ss_pred cEEEEecCH
Q 048682 8 DCLVVEDSV 16 (75)
Q Consensus 8 ~~l~igDs~ 16 (75)
+.+++|||.
T Consensus 2 ~i~~~GDSi 10 (188)
T cd01827 2 KVACVGNSI 10 (188)
T ss_pred eEEEEeccc
Confidence 367899996
No 366
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.50 E-value=1.3e+02 Score=19.82 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=18.0
Q ss_pred ecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 13 EDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 13 gDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
|.+...+..|..+|..+|++..+..+
T Consensus 82 g~~~e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 82 HESLDDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred CCCHHHHHHHHHcCCCEEeecCCCCC
Confidence 34566778888888888888655433
No 367
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=23.45 E-value=1.2e+02 Score=18.59 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEe-----cCHHhHHHHHHcCCeEEEEcC
Q 048682 2 LGISEKDCLVVE-----DSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 2 l~~~p~~~l~ig-----Ds~~di~aA~~AG~~~i~v~~ 34 (75)
.|++.++.+.|. |+..-++-|.++|...+.+.|
T Consensus 80 ~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~W 117 (168)
T TIGR00623 80 SGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGW 117 (168)
T ss_pred cCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEec
Confidence 588999998883 666778888888887776777
No 368
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.44 E-value=37 Score=22.10 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=9.1
Q ss_pred EEEEecCHHhHH
Q 048682 9 CLVVEDSVIGLQ 20 (75)
Q Consensus 9 ~l~igDs~~di~ 20 (75)
.++||||..|.=
T Consensus 3 l~vFGDS~sD~G 14 (315)
T cd01837 3 LFVFGDSLVDTG 14 (315)
T ss_pred EEEecCccccCC
Confidence 568899988763
No 369
>PLN02151 trehalose-phosphatase
Probab=23.39 E-value=1.5e+02 Score=20.38 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=30.2
Q ss_pred EEEEecCHHhHHHHHHc-----CCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHH
Q 048682 9 CLVVEDSVIGLQAATRA-----GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 65 (75)
Q Consensus 9 ~l~igDs~~di~aA~~A-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 65 (75)
.+||||-.+|-.+=+.. |+ .|.|..+. ....+.+.+++..++ .+.|..+..
T Consensus 291 pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~~----k~T~A~y~L~dp~eV-~~~L~~L~~ 346 (354)
T PLN02151 291 PIYIGDDRTDEDAFKILRDKKQGL-GILVSKYA----KETNASYSLQEPDEV-MEFLERLVE 346 (354)
T ss_pred EEEEcCCCcHHHHHHHHhhcCCCc-cEEeccCC----CCCcceEeCCCHHHH-HHHHHHHHH
Confidence 69999998875553322 32 33343211 123467889998888 566655443
No 370
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=23.25 E-value=2.1e+02 Score=18.14 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEecCHHhHHHHHHcCCeEEEEcCC--CCchhhhhccceeeCCCCCCCHHHHHHHHHHHh
Q 048682 2 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTS--STAEQDFKDAIAIYPDLSNVRLKDLELLLQNLQ 68 (75)
Q Consensus 2 l~~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 68 (75)
+|++.-...++.+...-.++|...|.+++.=... -..+.+......-+.+..++ .+.+.++.+.++
T Consensus 22 yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v-~~a~~~l~~~~~ 89 (222)
T PF13549_consen 22 YGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEV-REAFERLRERVA 89 (222)
T ss_dssp TT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHH-HHHHHHHHHHHH
T ss_pred cCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHH-HHHHHHHHHHHH
Confidence 5677777788888888899999999997633222 12222333334446665555 455555555554
No 371
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.13 E-value=1.3e+02 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.0
Q ss_pred cEEEEecCHHhHHHHHHc---C--CeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATRA---G--MACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G--~~~i~v~~ 34 (75)
++++||=...|+.||..| | ++++.+.-
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK 36 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCCCcEEEEec
Confidence 689999999999999877 4 77776653
No 372
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=23.10 E-value=1.4e+02 Score=18.67 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=13.1
Q ss_pred CCCCCcEEEEecC--HHhHHHHHHcCCeEEEE
Q 048682 3 GISEKDCLVVEDS--VIGLQAATRAGMACVIT 32 (75)
Q Consensus 3 ~~~p~~~l~igDs--~~di~aA~~AG~~~i~v 32 (75)
|++|+++++-|-. ..+++.|...|...+-+
T Consensus 61 g~~~~~Ii~~gp~k~~~~l~~a~~~~~~~i~v 92 (251)
T PF02784_consen 61 GFPPDRIIFTGPGKSDEELEEAIENGVATINV 92 (251)
T ss_dssp TTTGGGEEEECSS--HHHHHHHHHHTESEEEE
T ss_pred hccccceeEecCcccHHHHHHHHhCCceEEEe
Confidence 3444444444442 23444444444444433
No 373
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=23.06 E-value=2.3e+02 Score=18.68 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCCCcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 3 GISEKDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 3 ~~~p~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
....-++++||-.+.|+.+|... |+++..+-
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE 37 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVA 37 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEe
Confidence 34445799999999999988655 77776664
No 374
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.02 E-value=1.2e+02 Score=19.44 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCCCcEE-EEecC------HHhHHHHHHcCCeEEEEcCCCC
Q 048682 4 ISEKDCL-VVEDS------VIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 4 ~~p~~~l-~igDs------~~di~aA~~AG~~~i~v~~~~~ 37 (75)
+++++++ +|--| ..=++.|++.|+++|+|.....
T Consensus 185 ~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 185 LQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3556654 44322 2446788999999999986543
No 375
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=23.01 E-value=1.6e+02 Score=20.21 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.8
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++++||=.+.|+.+|+.+ |.+++.|-
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie 33 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIE 33 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 689999999999999875 77777664
No 376
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=22.80 E-value=1.3e+02 Score=21.52 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCcEEEEecCH-H------hHHHHHHcCCeEEEEcCC
Q 048682 6 EKDCLVVEDSV-I------GLQAATRAGMACVITYTS 35 (75)
Q Consensus 6 p~~~l~igDs~-~------di~aA~~AG~~~i~v~~~ 35 (75)
=++.++|.||. . =++..+.||.+-|.+.-.
T Consensus 348 GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 348 GKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 36789999985 3 478999999998877543
No 377
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.75 E-value=43 Score=19.52 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=7.8
Q ss_pred cEEEEecCHH
Q 048682 8 DCLVVEDSVI 17 (75)
Q Consensus 8 ~~l~igDs~~ 17 (75)
+.+++|||..
T Consensus 2 ~i~~~GDSi~ 11 (183)
T cd04501 2 RVVCLGDSIT 11 (183)
T ss_pred eEEEEccccc
Confidence 4678899975
No 378
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.60 E-value=2.7e+02 Score=19.24 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCcEEEEecCH-HhHHHHHH
Q 048682 6 EKDCLVVEDSV-IGLQAATR 24 (75)
Q Consensus 6 p~~~l~igDs~-~di~aA~~ 24 (75)
..+++|||||. .++.-+..
T Consensus 116 a~kvLvvGDslm~gla~gl~ 135 (354)
T COG2845 116 ADKVLVVGDSLMQGLAEGLD 135 (354)
T ss_pred CCEEEEechHHhhhhHHHHH
Confidence 46789999996 55555443
No 379
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.57 E-value=1.4e+02 Score=16.12 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=11.0
Q ss_pred cEEEEecCHHhHHHHHHcCCeEE
Q 048682 8 DCLVVEDSVIGLQAATRAGMACV 30 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~AG~~~i 30 (75)
++++++-+..-.+.+++.|...+
T Consensus 16 ~vi~~~~~~~k~~~~~~~Ga~~~ 38 (130)
T PF00107_consen 16 KVIATDRSEEKLELAKELGADHV 38 (130)
T ss_dssp EEEEEESSHHHHHHHHHTTESEE
T ss_pred EEEEEECCHHHHHHHHhhccccc
Confidence 34444444444555555554433
No 380
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=22.51 E-value=2.1e+02 Score=19.61 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 6 EKDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
.-++++||=.+.|+.+|..+ |.++..+-
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE 35 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE 35 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 34799999999999998865 67777774
No 381
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.47 E-value=1.6e+02 Score=20.36 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++++||=.+.|+.||..+ |.++..|-
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie 34 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVE 34 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 3799999999999998876 57776664
No 382
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=22.41 E-value=1.9e+02 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=16.0
Q ss_pred HhHHHHHHcCCeEEEEcCC
Q 048682 17 IGLQAATRAGMACVITYTS 35 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~ 35 (75)
.=|++|++.|+++|+|...
T Consensus 16 RVIRtar~lGi~tVAVYSd 34 (645)
T COG4770 16 RVIRTARDLGIRTVAVYSD 34 (645)
T ss_pred HHHHHHHHcCCceEEEEec
Confidence 4589999999999999654
No 383
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=22.34 E-value=2.5e+02 Score=20.88 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred HhHHHHHHcCCeEEEEcCC
Q 048682 17 IGLQAATRAGMACVITYTS 35 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~ 35 (75)
.=|+.|++.|+++|+|...
T Consensus 12 RVirTakkmGI~tVAV~Sd 30 (670)
T KOG0238|consen 12 RVIRTAKKMGIRTVAVYSD 30 (670)
T ss_pred hhhhHHHHhCCeEEEEEcc
Confidence 3478999999999999654
No 384
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.26 E-value=50 Score=19.81 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=7.1
Q ss_pred EEEEecCHH
Q 048682 9 CLVVEDSVI 17 (75)
Q Consensus 9 ~l~igDs~~ 17 (75)
++++|||.+
T Consensus 2 I~~~GDSiT 10 (208)
T cd01839 2 ILCFGDSNT 10 (208)
T ss_pred EEEEecCcc
Confidence 678899964
No 385
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=22.24 E-value=1.9e+02 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.6
Q ss_pred HhHHHHHHcCCeEEEEcC
Q 048682 17 IGLQAATRAGMACVITYT 34 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~ 34 (75)
..+++-++.||.+|.+-+
T Consensus 24 ~~~~~m~~~GidtlIlq~ 41 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQW 41 (166)
T ss_pred HHHHHHHHcCCcEEEEEE
Confidence 568889999999986654
No 386
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=22.22 E-value=2.8e+02 Score=19.33 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.9
Q ss_pred cEEEEe-cCHHhHHHHHHcCCeEEEEcCC
Q 048682 8 DCLVVE-DSVIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 8 ~~l~ig-Ds~~di~aA~~AG~~~i~v~~~ 35 (75)
++++|| ++.+=+++|.++|..+..|...
T Consensus 13 kiLviGvntR~vveSA~klGf~V~sv~~y 41 (389)
T COG2232 13 KILVIGVNTRPVVESASKLGFEVYSVQYY 41 (389)
T ss_pred eEEEEeecchHhHHHHHhcCeEEEEeEee
Confidence 488999 7788999999999999888653
No 387
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=22.20 E-value=1.8e+02 Score=20.35 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=24.7
Q ss_pred cEEEEecCHHhHHHHH---HcCCeEEEEcCCCC
Q 048682 8 DCLVVEDSVIGLQAAT---RAGMACVITYTSST 37 (75)
Q Consensus 8 ~~l~igDs~~di~aA~---~AG~~~i~v~~~~~ 37 (75)
++++||-...|+.+|. .+|-+|+.|..+..
T Consensus 4 Dv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 4 DVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6889999999998765 57999999987653
No 388
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=22.17 E-value=1.6e+02 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.7
Q ss_pred CcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 7 KDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
-++++||-..+|.-+|+.+ |++++.|-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvE 36 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCE 36 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 4799999999999988876 78887775
No 389
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=22.15 E-value=2.2e+02 Score=20.52 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=22.9
Q ss_pred CCCCcEEEEecCHHhHHH---HHHcCCeEEEEc
Q 048682 4 ISEKDCLVVEDSVIGLQA---ATRAGMACVITY 33 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~a---A~~AG~~~i~v~ 33 (75)
++++.++++|-..-|+.+ |+..|..++++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D 195 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFD 195 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEe
Confidence 568889999999877655 788898655543
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=22.05 E-value=55 Score=19.50 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=7.3
Q ss_pred CCCcEEEEecC
Q 048682 5 SEKDCLVVEDS 15 (75)
Q Consensus 5 ~p~~~l~igDs 15 (75)
.+..+++|||.
T Consensus 216 ~~~~~vlvGD~ 226 (236)
T PF13086_consen 216 APKRIVLVGDP 226 (236)
T ss_dssp TBSEEEEEE-T
T ss_pred hCCEEEEECCh
Confidence 34778888885
No 391
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=22.05 E-value=1.6e+02 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=18.0
Q ss_pred cCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 14 DSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 14 Ds~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
.+...+..|.++|..+|++..+..+
T Consensus 88 ~~~e~i~~ai~~GftSVM~DgS~lp 112 (285)
T PRK07709 88 SSFEKCKEAIDAGFTSVMIDASHHP 112 (285)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4566788888888888888655543
No 392
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=22.04 E-value=80 Score=16.23 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=9.1
Q ss_pred CHHhHHHHHHcC
Q 048682 15 SVIGLQAATRAG 26 (75)
Q Consensus 15 s~~di~aA~~AG 26 (75)
|..||++|.-+|
T Consensus 52 SR~DvE~Ai~~G 63 (63)
T PF11341_consen 52 SREDVEAAIFSG 63 (63)
T ss_pred CHHHHHHHHhcC
Confidence 567888887765
No 393
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.91 E-value=2e+02 Score=17.52 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.1
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.-++.|++.|+++|++....
T Consensus 129 ~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 129 KAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred HHHHHHHHCCCeEEEEeCCC
Confidence 56777888899999998654
No 394
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.80 E-value=1.9e+02 Score=19.11 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.7
Q ss_pred CcEEEEecCHHhHHHHHHc------CCeEEEEcC
Q 048682 7 KDCLVVEDSVIGLQAATRA------GMACVITYT 34 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A------G~~~i~v~~ 34 (75)
-++++||=.+.|+.+|... |++++.+-.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 4689999999999999886 998877653
No 395
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.76 E-value=2e+02 Score=17.48 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=31.8
Q ss_pred cCHHhHHHHHHcCCeEEEEcCCCCchhhhhccceeeCCCCCCCHHHHHHHHHHH
Q 048682 14 DSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNL 67 (75)
Q Consensus 14 Ds~~di~aA~~AG~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 67 (75)
|..+++.++.+-++..- |.+--......-..+..++++.+|.++.+-+-...+
T Consensus 60 dNFd~Vm~~~~p~l~~~-V~N~L~~d~~~l~V~L~f~sm~DF~Pd~Ia~qVp~L 112 (159)
T TIGR03358 60 DNFDEVMEAMNPRLSFA-VKNTLSDDGEELPVDLKFESMDDFSPDAVAKQVPEL 112 (159)
T ss_pred ccHHHHHHhCCCceEEE-CCCccCCCCCeeEEEeccCccccCCHHHHHHHhHHH
Confidence 66778888777776533 433222111122356788999999988765533333
No 396
>PLN03156 GDSL esterase/lipase; Provisional
Probab=21.75 E-value=54 Score=22.08 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=10.7
Q ss_pred CcEEEEecCHHhHH
Q 048682 7 KDCLVVEDSVIGLQ 20 (75)
Q Consensus 7 ~~~l~igDs~~di~ 20 (75)
...++||||..|.=
T Consensus 28 ~aifvFGDSl~D~G 41 (351)
T PLN03156 28 PAIIVFGDSSVDAG 41 (351)
T ss_pred CEEEEecCcCccCC
Confidence 45789999987754
No 397
>COG3236 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.72 E-value=45 Score=20.20 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=11.7
Q ss_pred CCCcEEEEecCHHhH
Q 048682 5 SEKDCLVVEDSVIGL 19 (75)
Q Consensus 5 ~p~~~l~igDs~~di 19 (75)
...+.+.||||++|.
T Consensus 120 ~Tgd~vLVE~s~~D~ 134 (162)
T COG3236 120 ATGDAVLVEASPNDA 134 (162)
T ss_pred hcCCeeEEecCCCcc
Confidence 346788999999884
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.68 E-value=1.5e+02 Score=22.63 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.1
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
++++||=...|+.||..| |.+++.+.
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lle 43 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLE 43 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 689999999999998766 88887774
No 399
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=21.61 E-value=1.8e+02 Score=19.27 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 6 EKDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
.-++++||-.+.|+.+|... |.+++.+-
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE 35 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLE 35 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEc
Confidence 34789999999999998766 78877664
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.36 E-value=81 Score=22.44 Aligned_cols=30 Identities=37% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCCCcEEEEecCHHhHHHHHHc-------CCeEEEEc
Q 048682 4 ISEKDCLVVEDSVIGLQAATRA-------GMACVITY 33 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~A-------G~~~i~v~ 33 (75)
+.|.++++|=|+..|-.|...| |+..|.++
T Consensus 211 ~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 211 INPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred cCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 5799999999999998887655 45656554
No 401
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.34 E-value=2.1e+02 Score=18.08 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=14.7
Q ss_pred HhHHHHHHcCCeEEEEcC
Q 048682 17 IGLQAATRAGMACVITYT 34 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~ 34 (75)
.=++-|+..|+++|++..
T Consensus 193 ~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 193 ELAQLARENGATVIAITS 210 (284)
T ss_pred HHHHHHHHcCCeEEEECC
Confidence 346678899999999986
No 402
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.31 E-value=58 Score=18.75 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=7.4
Q ss_pred EEEEecCHH
Q 048682 9 CLVVEDSVI 17 (75)
Q Consensus 9 ~l~igDs~~ 17 (75)
.+++|||..
T Consensus 2 v~~~GdSi~ 10 (169)
T cd01828 2 LVFLGDSLT 10 (169)
T ss_pred EEEecchhh
Confidence 678999975
No 403
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.26 E-value=1.9e+02 Score=16.85 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.8
Q ss_pred HhHHHHHHcCCeEEEEcCCC
Q 048682 17 IGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 17 ~di~aA~~AG~~~i~v~~~~ 36 (75)
.=++.|++.|+++|++....
T Consensus 97 ~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 97 KAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 45677888899999997643
No 404
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=21.22 E-value=1.6e+02 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=27.2
Q ss_pred CCCCCCcEEEEec--CHHhHHHHHHcCCeEEEEc
Q 048682 2 LGISEKDCLVVED--SVIGLQAATRAGMACVITY 33 (75)
Q Consensus 2 l~~~p~~~l~igD--s~~di~aA~~AG~~~i~v~ 33 (75)
+|++|++||+..- +...|+=|...|+...-+.
T Consensus 119 ~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfD 152 (448)
T KOG0622|consen 119 LGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFD 152 (448)
T ss_pred cCCChHHeEecCCCccHHHHHHHHHcCCeEEeec
Confidence 7999999999975 5789999999999876553
No 405
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.21 E-value=1.4e+02 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=15.9
Q ss_pred HHhHHHHHHcCCeEEEEcCC
Q 048682 16 VIGLQAATRAGMACVITYTS 35 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~~~ 35 (75)
..-++.|++.|+++|.+...
T Consensus 60 i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 60 LSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 35677889999999999743
No 406
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=21.20 E-value=1.4e+02 Score=20.29 Aligned_cols=29 Identities=24% Similarity=0.076 Sum_probs=24.6
Q ss_pred CCCcEEEEecCHHhHHHHHHcCCeEEEEcC
Q 048682 5 SEKDCLVVEDSVIGLQAATRAGMACVITYT 34 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA~~AG~~~i~v~~ 34 (75)
+|+-++.+||-. -+.+|+-.|++++.+.+
T Consensus 93 ~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 93 KGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred cCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 677889999999 88899999999987543
No 407
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=21.16 E-value=53 Score=19.55 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=6.4
Q ss_pred cEEEEecCH
Q 048682 8 DCLVVEDSV 16 (75)
Q Consensus 8 ~~l~igDs~ 16 (75)
+.++||||.
T Consensus 2 ~i~~~GDS~ 10 (198)
T cd01821 2 TIFLAGDST 10 (198)
T ss_pred EEEEEecCC
Confidence 467778886
No 408
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.12 E-value=1.5e+02 Score=20.06 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=28.1
Q ss_pred CCcEEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 6 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
-+.+-.|||....++.=+++|++.+++.|...+
T Consensus 101 ~ega~~~~~dl~~L~~~~~~GvR~lgltwn~~N 133 (313)
T COG2355 101 MEGAEPLGDDLDKLELFHALGVRSLGLTWNRDN 133 (313)
T ss_pred ccCcccccccHHHHHHHHHhCceEEEeeeccCC
Confidence 356778999999999999999999999887643
No 409
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=21.10 E-value=1.4e+02 Score=19.81 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=21.4
Q ss_pred EEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 10 LVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 10 l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
|+|.|...-+++|. -+++++.|+++..
T Consensus 236 IFFDDQ~~H~~~a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 236 IFFDDQDGHLESAS-KVVPSGHVPYGVA 262 (264)
T ss_pred EeecCchhhhhHhh-cCCCEEeccCCcC
Confidence 67888888888888 7888888877643
No 410
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=21.09 E-value=98 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.1
Q ss_pred CCCCcEEEEecCH-HhHHHHH-HcCCeEEEEcC
Q 048682 4 ISEKDCLVVEDSV-IGLQAAT-RAGMACVITYT 34 (75)
Q Consensus 4 ~~p~~~l~igDs~-~di~aA~-~AG~~~i~v~~ 34 (75)
..-.++++|||.+ +|+..-. +.|.++-+|..
T Consensus 344 WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 344 WRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred cCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 4456799999997 6887766 89999887754
No 411
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.03 E-value=1.1e+02 Score=14.31 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=20.1
Q ss_pred eeCCCCCCCHHHHHHHHHHHhhccCCCC
Q 048682 48 IYPDLSNVRLKDLELLLQNLQQLNLPNN 75 (75)
Q Consensus 48 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 75 (75)
++.+-..+..+.-+++++.++++++.+|
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3455566778888888888888886654
No 412
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.02 E-value=1.2e+02 Score=15.06 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHhHHHHHHcCCeEEEEc
Q 048682 16 VIGLQAATRAGMACVITY 33 (75)
Q Consensus 16 ~~di~aA~~AG~~~i~v~ 33 (75)
..=++.+++.|+++|.+.
T Consensus 64 ~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 64 LAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHcCCeEEEEe
Confidence 345778889999998876
No 413
>PRK07236 hypothetical protein; Provisional
Probab=20.98 E-value=2e+02 Score=19.10 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCCCcEEEEecCHHhHHHHHHc---CCeEEEEc
Q 048682 4 ISEKDCLVVEDSVIGLQAATRA---GMACVITY 33 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~A---G~~~i~v~ 33 (75)
..+.++++||=.+.|+.+|... |++++.+-
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 4567899999999999998765 88877664
No 414
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.98 E-value=1.1e+02 Score=16.97 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.6
Q ss_pred CCcEEEEecC-HHhHHHH
Q 048682 6 EKDCLVVEDS-VIGLQAA 22 (75)
Q Consensus 6 p~~~l~igDs-~~di~aA 22 (75)
..+-|.|||| ..|.+.-
T Consensus 64 ~~kfiLIGDsgq~DpeiY 81 (100)
T PF09949_consen 64 ERKFILIGDSGQHDPEIY 81 (100)
T ss_pred CCcEEEEeeCCCcCHHHH
Confidence 3467788887 3565543
No 415
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.92 E-value=2e+02 Score=17.78 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.1
Q ss_pred cEEEEecCHHhHHHHHHc---CCeEEEEcC
Q 048682 8 DCLVVEDSVIGLQAATRA---GMACVITYT 34 (75)
Q Consensus 8 ~~l~igDs~~di~aA~~A---G~~~i~v~~ 34 (75)
++++||=.+.|+.+|... |++++.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 578999999999888654 788776643
No 416
>PRK02947 hypothetical protein; Provisional
Probab=20.92 E-value=1.9e+02 Score=18.34 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=22.2
Q ss_pred CCCCcEEEE-e------cCHHhHHHHHHcCCeEEEEcCCC
Q 048682 4 ISEKDCLVV-E------DSVIGLQAATRAGMACVITYTSS 36 (75)
Q Consensus 4 ~~p~~~l~i-g------Ds~~di~aA~~AG~~~i~v~~~~ 36 (75)
+.+++++++ - +...=++.|++.|+++|++....
T Consensus 104 ~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 104 IRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 456665543 2 22345778999999999998654
No 417
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=20.88 E-value=1.3e+02 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=24.0
Q ss_pred EEEEecCHHhHHHHHHcCCeEEEEcCCCCc
Q 048682 9 CLVVEDSVIGLQAATRAGMACVITYTSSTA 38 (75)
Q Consensus 9 ~l~igDs~~di~aA~~AG~~~i~v~~~~~~ 38 (75)
+..||-..--++||+++|++...++-|...
T Consensus 150 igpVGGi~~K~~AA~~~g~kifLIP~Gq~~ 179 (579)
T COG1750 150 IGPVGGILEKLEAAAKAGAKIFLIPVGQRI 179 (579)
T ss_pred cccccchHHHHHHHHhCCCeEEEeeccccc
Confidence 336778888899999999999988876543
No 418
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.85 E-value=2.6e+02 Score=19.31 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.8
Q ss_pred HHHHHHcCCeEEEEcCC
Q 048682 19 LQAATRAGMACVITYTS 35 (75)
Q Consensus 19 i~aA~~AG~~~i~v~~~ 35 (75)
++.|++|||+-+.+..-
T Consensus 87 a~~~k~AGakY~vlTaK 103 (384)
T smart00812 87 ADLFKKAGAKYVVLTAK 103 (384)
T ss_pred HHHHHHcCCCeEEeeee
Confidence 78999999998766543
No 419
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=20.79 E-value=61 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=11.2
Q ss_pred CCcEEEEecCHHhHH
Q 048682 6 EKDCLVVEDSVIGLQ 20 (75)
Q Consensus 6 p~~~l~igDs~~di~ 20 (75)
-...++||||.+|.-
T Consensus 29 ~~~l~vfGDSlSDsg 43 (370)
T COG3240 29 FQRLVVFGDSLSDSG 43 (370)
T ss_pred cceEEEeccchhhcc
Confidence 456788999988753
No 420
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=20.65 E-value=1.8e+02 Score=19.96 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=24.2
Q ss_pred CHHhHHHHHHcCC-e-EEEEcCCCCchhhhhcc----------ceeeCCCCCC
Q 048682 15 SVIGLQAATRAGM-A-CVITYTSSTAEQDFKDA----------IAIYPDLSNV 55 (75)
Q Consensus 15 s~~di~aA~~AG~-~-~i~v~~~~~~~~~~~~~----------~~~~~~~~~l 55 (75)
|...++.|.++|+ + .+.+..+....+.+..+ ...++|+.|+
T Consensus 72 S~~El~~al~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL 124 (409)
T cd06830 72 SKPELLAALALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSEL 124 (409)
T ss_pred CHHHHHHHHhcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHH
Confidence 5678999999998 2 35555553333333211 2456776665
No 421
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=20.60 E-value=37 Score=17.39 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=6.8
Q ss_pred EEEEecCHHhHHHH
Q 048682 9 CLVVEDSVIGLQAA 22 (75)
Q Consensus 9 ~l~igDs~~di~aA 22 (75)
.|++||...|++-.
T Consensus 17 ~IY~gdr~~DielM 30 (62)
T PF06014_consen 17 IIYVGDRLWDIELM 30 (62)
T ss_dssp ----S-HHHHHHHH
T ss_pred EEEeCChHHHHHHH
Confidence 57888888888754
No 422
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.58 E-value=2.2e+02 Score=17.43 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.7
Q ss_pred CCCcEEEEecCHHhHHHH---HHcCCeEEEEcCCCC
Q 048682 5 SEKDCLVVEDSVIGLQAA---TRAGMACVITYTSST 37 (75)
Q Consensus 5 ~p~~~l~igDs~~di~aA---~~AG~~~i~v~~~~~ 37 (75)
.+++.++||-|.-|.-|. ..-|+++|.|.....
T Consensus 57 ~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 57 KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 456689999999888764 446999998864443
No 423
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=20.52 E-value=80 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCCCCCcEEE-EecCHH-hHHHHHHcCCeEEEEcC
Q 048682 1 RLGISEKDCLV-VEDSVI-GLQAATRAGMACVITYT 34 (75)
Q Consensus 1 ~l~~~p~~~l~-igDs~~-di~aA~~AG~~~i~v~~ 34 (75)
++|++.+++++ +|||-+ |++.=..---++|.+.+
T Consensus 967 rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~g 1002 (1050)
T TIGR02468 967 RWGIELANMAVFVGESGDTDYEGLLGGLHKTVILKG 1002 (1050)
T ss_pred HcCCChHHeEEEeccCCCCCHHHHhCCceeEEEEec
Confidence 47899999955 999988 86654433345665554
No 424
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=20.49 E-value=1.1e+02 Score=19.05 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=14.7
Q ss_pred CCcEEEEecCHHhHHHHHHcCC
Q 048682 6 EKDCLVVEDSVIGLQAATRAGM 27 (75)
Q Consensus 6 p~~~l~igDs~~di~aA~~AG~ 27 (75)
+.-++++||..+|-.+=+...-
T Consensus 184 ~~~~l~~GDD~tDE~~f~~~~~ 205 (235)
T PF02358_consen 184 PDFVLYIGDDRTDEDAFRALRE 205 (235)
T ss_dssp ---EEEEESSHHHHHHHHTTTT
T ss_pred cceeEEecCCCCCHHHHHHHHh
Confidence 4568999999988776555443
No 425
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=20.41 E-value=52 Score=19.64 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.6
Q ss_pred CcEEEEecCHHhHHHHHHc
Q 048682 7 KDCLVVEDSVIGLQAATRA 25 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~A 25 (75)
.+.++||+...||++|..-
T Consensus 99 ~~i~vVGEnk~GIkSa~K~ 117 (155)
T PF08468_consen 99 TEIFVVGENKGGIKSAEKQ 117 (155)
T ss_dssp -EEEEEEEGGGTGGGHHHH
T ss_pred CEEEEEecCcccHHHHHHH
Confidence 5788999999999998763
No 426
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=20.38 E-value=1.6e+02 Score=18.58 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=17.5
Q ss_pred CcEEEEecCHHhHHHHHHcCCeEEEE
Q 048682 7 KDCLVVEDSVIGLQAATRAGMACVIT 32 (75)
Q Consensus 7 ~~~l~igDs~~di~aA~~AG~~~i~v 32 (75)
-++.+|.|... .+.|++||+..|+.
T Consensus 62 ~~v~V~a~~~~-~~~Ak~aGa~vvg~ 86 (216)
T PTZ00029 62 LKVCVLGDAVH-CDEAKKLGLDFMDI 86 (216)
T ss_pred cEEEEECCcHH-HHHHHHcCCCEecH
Confidence 35667766553 66799999986654
No 427
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.34 E-value=1.9e+02 Score=19.38 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCCCcEEEEecCHHhHHHHHHcCCeEEEEcCCCC
Q 048682 4 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 37 (75)
Q Consensus 4 ~~p~~~l~igDs~~di~aA~~AG~~~i~v~~~~~ 37 (75)
-.|.++++.|=|..|..++ .|+..|+|.+...
T Consensus 47 k~PKRVVVLE~SFaDaLaa--l~v~PVGIADDnk 78 (310)
T COG4594 47 KTPKRVVVLELSFADALAA--LGVTPVGIADDNK 78 (310)
T ss_pred CCCceEEEEEecHHHHHHH--cCCeeeeeccCch
Confidence 4589999999999887765 6999999986553
No 428
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=20.24 E-value=1.9e+02 Score=20.03 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=21.3
Q ss_pred CCCCCcEEEEecC--HHhHHHHHHcCCeEEEEc
Q 048682 3 GISEKDCLVVEDS--VIGLQAATRAGMACVITY 33 (75)
Q Consensus 3 ~~~p~~~l~igDs--~~di~aA~~AG~~~i~v~ 33 (75)
|++|+++++-|.. ..+++.|.+.|+++|-+.
T Consensus 93 G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vd 125 (394)
T COG0019 93 GFPPERIVFSGPAKSEEEIAFALELGIKLINVD 125 (394)
T ss_pred CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeC
Confidence 6677777776665 467777777777766553
No 429
>PF15648 Tox-REase-5: Restriction endonuclease fold toxin 5
Probab=20.12 E-value=71 Score=17.47 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=7.3
Q ss_pred CCCCCcEEEEe
Q 048682 3 GISEKDCLVVE 13 (75)
Q Consensus 3 ~~~p~~~l~ig 13 (75)
|..|++|+++|
T Consensus 33 Gf~p~~c~l~E 43 (95)
T PF15648_consen 33 GFDPAECLLLE 43 (95)
T ss_pred CccCCCCEEEe
Confidence 45577777776
No 430
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=20.06 E-value=2.4e+02 Score=17.85 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.6
Q ss_pred cEEEEecCHHhHHHHH---HcCCeEEEEcCC
Q 048682 8 DCLVVEDSVIGLQAAT---RAGMACVITYTS 35 (75)
Q Consensus 8 ~~l~igDs~~di~aA~---~AG~~~i~v~~~ 35 (75)
++++||-...|+..|. +.|.+++.+-..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4789999999999998 789988877654
No 431
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.01 E-value=79 Score=19.10 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=20.1
Q ss_pred EEecCHHhHHHHHHcCCeE--EEEcCC
Q 048682 11 VVEDSVIGLQAATRAGMAC--VITYTS 35 (75)
Q Consensus 11 ~igDs~~di~aA~~AG~~~--i~v~~~ 35 (75)
.+|.+.+|+.+=+++|++. |++-+.
T Consensus 124 gfGN~~tDv~aY~~vGip~~rIF~I~~ 150 (157)
T PF08235_consen 124 GFGNRSTDVIAYKAVGIPKSRIFIINP 150 (157)
T ss_pred ecCCcHHHHHHHHHcCCChhhEEEECC
Confidence 5899999999999999974 555443
Done!