BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048683
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 36/208 (17%)
Query: 211 LALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD 270
+ L+S +KKMI D+ F ++Y G ++RGYLL+GPPG+GK++ + ++A L +D
Sbjct: 210 VVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYD 269
Query: 271 IYHLDLTDIQFSSD-LQFLLLTMPSR--------------------------VTLSGLLN 303
I L+L + + D L LL +P + VT SGLLN
Sbjct: 270 ICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFHANVTFSGLLN 329
Query: 304 FIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMN 363
+DG S + RII TNH EKLDPAL+RPGR+D +A YLG + +M
Sbjct: 330 ALDGVTS--SDERIIFMTTNHPEKLDPALVRPGRVDVKA--YLGNATPEQVREMFTRFYG 385
Query: 364 GTPAEAAGELAN----SAEAQVSLQGLI 387
+P E A +L++ + SLQGL
Sbjct: 386 HSP-EMADDLSDIVCPKNTSMASLQGLF 412
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 33/175 (18%)
Query: 213 LDSELKKMIIKDL-DIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDI 271
LDS +K+ I+ D+ D +NGK Y R G ++RGYLL+GPPG+GK++ I ++A L ++I
Sbjct: 230 LDSGIKEGILDDVYDFMKNGKWYSDR-GIPYRRGYLLYGPPGSGKTSFIQALAGELDYNI 288
Query: 272 YHLDLTDIQFSSD-LQFLLLTMPSR--------------------------VTLSGLLNF 304
L+L++ + D L L+ MP R VT SGLLN
Sbjct: 289 CILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSSVTFSGLLNA 348
Query: 305 IDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI 359
+DG S E I TNH EKLD A++RPGR+D + F +G + + E+M +
Sbjct: 349 LDGVTS--SEETITFMTTNHPEKLDAAIMRPGRIDYKVF--VGNATPYQVEKMFM 399
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 170 HVLKKAK--AVKEDCNTVKLHTVLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDI 227
++L++A+ A+K++ ++T + W + + L+S + + I+ D+
Sbjct: 149 NILQEARELALKQEEGRTVMYTAMGAEWRPFGFPRR-RRPLSSVVLESGVAERIVDDVKE 207
Query: 228 FRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSD-LQ 286
F ++Y G ++RGYLL+GPPG GKS+ I ++A L + I + L+D S D L
Sbjct: 208 FIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLN 267
Query: 287 FLLLTMP-------------------------------SRVTLSGLLNFIDGSWSWCGEG 315
LL P R+T SGLLN +DG S E
Sbjct: 268 HLLSVAPQQSIILLEDVDAAFVSRELLPTENPLAYQGMGRLTFSGLLNALDGVAS--SEA 325
Query: 316 RIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELAN 375
RI+ TN E+LDPAL+RPGR+D + Y+G H QM P E+A E +
Sbjct: 326 RIVFMTTNFIERLDPALVRPGRVDLK--QYVGHCSHWQLTQMF---RRFYPQESAAEADH 380
Query: 376 SAE 378
+E
Sbjct: 381 FSE 383
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 89/201 (44%), Gaps = 58/201 (28%)
Query: 213 LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY 272
LD ++II+D+ F N ++Y G ++RGYLL+GPPGTGKS+ I ++A L+ I
Sbjct: 211 LDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSIC 270
Query: 273 HLDLTDIQFS-SDLQFLLLTMPSR------------------------------------ 295
L+L S + L LL T P R
Sbjct: 271 ILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGL 330
Query: 296 -----------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRM 338
+T SGLLN +DG EGRI+ TNH EKLD L+RPGR+
Sbjct: 331 QYQGYYGNPSVSSGGSALTFSGLLNALDG--VAASEGRILFMTTNHLEKLDKVLIRPGRV 388
Query: 339 DQRAFNYLGISHHHLYEQMLI 359
D + +G+ + EQM +
Sbjct: 389 DLQI--EIGLCSSYQMEQMFL 407
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 110/242 (45%), Gaps = 41/242 (16%)
Query: 170 HVLKKAK--AVKEDCNTVKLHTVLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDI 227
++L++A+ A++++ ++T + + W + + L L I++D+
Sbjct: 149 NILEEARELALQQEEGKTVMYTAVGSEWRPFGYP-RRRRPLNSVVLQQGLADRIVRDVQE 207
Query: 228 FRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY--------------- 272
F + ++Y G ++RGYLL+GPPG GKS+ I ++A L+ I
Sbjct: 208 FIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLN 267
Query: 273 HLDLTDIQFS------SDLQFLLLTMP----------SRVTLSGLLNFIDGSWSWCGEGR 316
HL Q S D FL + R+T SGLLN +DG S E R
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRLTFSGLLNALDGVAS--TEAR 325
Query: 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELANS 376
I+ TNH ++LDPAL+RPGR+D + Y+G H QM P +A N
Sbjct: 326 IVFMTTNHVDRLDPALIRPGRVDLK--EYVGYCSHWQLTQMF---QRFYPGQAPSLAENF 380
Query: 377 AE 378
AE
Sbjct: 381 AE 382
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 43/243 (17%)
Query: 170 HVLKKAKAV---KEDCNTVKLHTVLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLD 226
++L++A+A+ +E+ TV ++T + + W + + L L I+KD+
Sbjct: 149 NILEEARALALQQEEGKTV-MYTAVGSEWRTFGYP-RRRRPLDSVVLQQGLADRIVKDIR 206
Query: 227 IFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY-------------- 272
F + ++Y G ++RGYLL+GPPG GKS+ I ++A L+ I
Sbjct: 207 EFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRL 266
Query: 273 -HLDLTDIQFS------SDLQFLLLTMP----------SRVTLSGLLNFIDGSWSWCGEG 315
HL Q S D FL + R+T SGLLN +DG S E
Sbjct: 267 NHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRLTFSGLLNALDGVAS--TEA 324
Query: 316 RIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELAN 375
RI+ TN+ ++LDPAL+RPGR+D + Y+G H QM P +A N
Sbjct: 325 RIVFMTTNYIDRLDPALIRPGRVDLK--EYVGYCSHWQLTQMF---QRFYPGQAPSLAEN 379
Query: 376 SAE 378
AE
Sbjct: 380 FAE 382
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 38/193 (19%)
Query: 211 LALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD 270
+ L+ + + I++D+ F ++Y G ++RGYLL+GPPG GKS+ I ++A L++
Sbjct: 191 VVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYS 250
Query: 271 I-YHLDLTDIQFSSDLQFLLLTMP------------------------------SRVTLS 299
I L LL P R+T S
Sbjct: 251 ICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQGMGRLTFS 310
Query: 300 GLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI 359
GLLN +DG S E RI+ TNH ++LDPAL+RPGR+D + Y+G H Q+
Sbjct: 311 GLLNALDGVAS--TEARIVFMTTNHIDRLDPALIRPGRVDVK--QYVG---HCTNWQLSQ 363
Query: 360 MEMNGTPAEAAGE 372
M + P + AG+
Sbjct: 364 MFLRFYPDQTAGQ 376
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 41/242 (16%)
Query: 170 HVLKKAK--AVKEDCNTVKLHTVLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDI 227
++L++A+ A++++ ++T + + W + + L+ + + I++D+
Sbjct: 149 NILEEARELALQQEEGKTVMYTAVGSEWRPFGYP-RRRRPLNSVVLEQGVTERIVRDIRE 207
Query: 228 FRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY--------------- 272
F + ++Y G ++RGYLL+GPPG GKS+ I ++A L+ I
Sbjct: 208 FIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLN 267
Query: 273 HLDLTDIQFS------SDLQFLLLTMPS----------RVTLSGLLNFIDGSWSWCGEGR 316
HL Q S D FL + + R+T SGLLN +DG S E R
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKYQGLGRLTFSGLLNALDGVAS--TEAR 325
Query: 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELANS 376
I+ TNH ++LDPAL+RPGR+D + Y+G H Q+ M P +A N
Sbjct: 326 IVFMTTNHIDRLDPALIRPGRVDMK--EYVG---HCSRWQLTQMFQRFYPGQATSLAENF 380
Query: 377 AE 378
A+
Sbjct: 381 AD 382
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 36/166 (21%)
Query: 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANH 266
+ + L +LK +I+D+ F + +YR G ++RGYLL+G PG GKS+LI ++A
Sbjct: 185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGE 244
Query: 267 LKFDIYHLDLT--DIQFSSDLQFLLLTMPSR----------------------------- 295
L DI + L+ DI + LL P +
Sbjct: 245 LNLDICIVSLSSKDID-DKQINHLLNNAPPKSILLIEDIDAAFKSHRDNVDSNNNNSNNN 303
Query: 296 --VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMD 339
+T SGLLN +DG S EGRI+ TN E LD AL+R GR+D
Sbjct: 304 NSLTYSGLLNALDGVASQ--EGRILFMTTNKIELLDSALIREGRID 347
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 26/180 (14%)
Query: 217 LKKMIIKDLD-IFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275
LKK I + +D F + K +Y+ +KRG LL+GPPG GK+ L+ S+A + + +
Sbjct: 193 LKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQ 252
Query: 276 LTDIQFSSDLQFLLL----------------TMPSRVTLSGLLNFIDGSWSWCGEGRIIL 319
+T+ S ++ + +MP V S LN +DG+ S EG ++
Sbjct: 253 ITEFTSSETIEEVFQAARRLAPAVLVIEDIDSMPEDVR-SFFLNTLDGATS--KEGLFLI 309
Query: 320 FWTNHKEKLDPALL-RPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAE-AAGELANSA 377
TN+ E++DP L+ R GR D RA+ +G+ L ++ M+M G + GE+ N+A
Sbjct: 310 GTTNYPEEIDPGLMNRAGRFD-RAYE-IGLPDEEL--RLEYMKMRGFGIFLSEGEIKNAA 365
>sp|Q1LLA9|FTSH_RALME ATP-dependent zinc metalloprotease FtsH OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=ftsH PE=3 SV=1
Length = 649
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 56/232 (24%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q+A+TF D+A E K+ +++ +D ++ +++ + GR+ RG LL GPPGTGK+ L +
Sbjct: 164 QNAVTFADVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-PRGVLLVGPPGTGKTLLARA 222
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A K + + +D ++ + +RV
Sbjct: 223 IAGEAKVPFFSISGSDF-----VEMFVGVGAARVRDMFENAKKQAPCIVFIDEIDAVGRH 277
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA 342
TL+ +L +DG + G I++ TN + LD ALLRPGR D++
Sbjct: 278 RGAGMGGGNDEREQTLNQMLVEMDGFEA--NSGVIVIAATNRADVLDKALLRPGRFDRQV 335
Query: 343 FNYLGISHHHLYEQMLIMEMNGTPAEAAGELANSAEAQVSLQGLIKFLHVKL 394
Y+G+ EQ+L + M P + N +A + +G F L
Sbjct: 336 --YVGLPDIRGREQILKVHMRKVP------IGNDVDASIIARGTPGFSGADL 379
>sp|Q0TTK8|FTSH_CLOP1 ATP-dependent zinc metalloprotease FtsH OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=ftsH PE=3
SV=1
Length = 717
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 37/173 (21%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
+ +TFKD+A E K+ +++ +D + ++Y +G +G LL GPPGTGK+ L +
Sbjct: 160 ETGITFKDVAGQDEAKESLVEIVDFLHDTRKYVE-IGAKLPKGALLVGPPGTGKTLLAKA 218
Query: 263 MANHLKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRV 296
+A K + + +D I F ++ + + +
Sbjct: 219 VAGEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAI 278
Query: 297 --------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG S +G +IL TN E LD ALLRPGR D+R
Sbjct: 279 QGNDEREQTLNQLLTEMDGFDS--SKGVVILAATNRPEVLDKALLRPGRFDRR 329
>sp|B3DY14|FTSH2_METI4 ATP-dependent zinc metalloprotease FtsH 2 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH2 PE=3 SV=1
Length = 641
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 61/223 (27%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TFKD+A E K+ + + ++ ++ K++ + GR+ K G L+ GPPGTGK+ L ++A
Sbjct: 150 VTFKDVAGVEEAKEEVQELVEFLKDPKKFQKLGGRIPK-GVLMVGPPGTGKTLLAKAIAG 208
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
+ + +D ++ + SRV
Sbjct: 209 EADVPFFSISGSDF-----VEMFVGVGASRVRDMFEQARRHAPCIVFIDEIDAVGRARGT 263
Query: 297 -----------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA-FN 344
TL+ LL +DG S EG I++ TN K+ LDPALLRPGR D+ N
Sbjct: 264 GLGGGHDEREQTLNALLVEMDGIESQ--EGVIVIAATNRKDVLDPALLRPGRFDREVRVN 321
Query: 345 YLGISHHH----LYEQMLIMEMN--------GTPAEAAGELAN 375
I ++ Q + + N GTP + ELAN
Sbjct: 322 LPDIRGREQILRVHAQKIKLSKNADLSALARGTPGFSGAELAN 364
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 137 LEDHNASLRSE--VRHYELSFHK------KHTDTVLNLY-LPHVLKKAKAVKEDCNTVK- 186
+ D + +R E V Y++ K + D L LY LP + +K+ N +K
Sbjct: 71 INDFGSQIRYELNVGFYKIKTRKHGWIFVNYVDNKLILYKLPKISFFPPQIKKQTNRLKK 130
Query: 187 ----LHTV------LRNCWDANN-----VVLQHAMTFKDLALDSELKKMIIKDLDIFRNG 231
+H++ +R C+ +NN +++ F D L +E++ ++KD+D+F
Sbjct: 131 FIDSVHSISCRPDEMRMCYTSNNNNWSYPIIRRPCKFLDSNLTTEMRS-VLKDVDVFMRN 189
Query: 232 KEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLT 291
++ YR +G ++RG LL+G G GK+ LI+ ++N D Y L+L S +L++
Sbjct: 190 EDTYRELGANYRRGMLLYGESGCGKTGLISIISNKYGMDSYILNLNSKDMSDS---VLIS 246
Query: 292 MPSRVTLSGLL 302
+ S V +L
Sbjct: 247 LASNVKARSIL 257
>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
Length = 646
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 39/172 (22%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF D+A E K+ + + +D +N + Y+R+G +G LL GPPGTGK+ L ++A
Sbjct: 194 VTFDDVAGIEEAKQELAEIVDFLKN-PQKYQRLGGTIPKGVLLIGPPGTGKTLLARAVAG 252
Query: 266 HLKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRVTLS 299
+ + ++ I F +L + S + +
Sbjct: 253 EAGVPFFSMSGSEFVEMIVGVGAARVRELFQQAKKEAPCIIFVDELDAIGRRRGSSINVG 312
Query: 300 G----------LLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
G LL +DG S +G I+L TN + LDPALLRPGR D+R
Sbjct: 313 GHDEREQTLNQLLVEMDGFDSR--QGVIVLAATNRPDVLDPALLRPGRFDRR 362
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 38/169 (22%)
Query: 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANH 266
TF+D+A E + + +D +N ++Y GR+ K G LL GPPGTGK+ L ++A
Sbjct: 249 TFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPK-GVLLVGPPGTGKTLLAKAIAGE 307
Query: 267 LKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRV---- 296
+ L +D I F +L L + V
Sbjct: 308 AGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDALGKSRSGSVVGGH 367
Query: 297 -----TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340
TL+ LL +DG S G I++ TN E LDPALLRPGR D+
Sbjct: 368 DEREQTLNALLVEMDGFDS--NSGVIVVAATNRPETLDPALLRPGRFDR 414
>sp|A1URA3|FTSH_BARBK ATP-dependent zinc metalloprotease FtsH OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=ftsH PE=3 SV=1
Length = 764
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 48/179 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q +TFKD+A E K+ + + +D R +++ R GR+ RG LL GPPGTGK+ L S
Sbjct: 150 QGRVTFKDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-PRGVLLVGPPGTGKTLLARS 208
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 209 IAGEANVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRH 263
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG E I++ TN + LDPALLRPGR D++
Sbjct: 264 RGAGLGGGNDEREQTLNQLLVEMDGFEP--NESIILIAATNRPDVLDPALLRPGRFDRQ 320
>sp|A6TWP7|FTSH2_ALKMQ ATP-dependent zinc metalloprotease FtsH 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH2 PE=3 SV=1
Length = 689
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 50/201 (24%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF D+A E K + + +D +N K+Y R+ K G L+ GPPGTGK+ L ++A
Sbjct: 162 ITFDDVAGLDEEKAEVEELVDFLKNPKKYIELGARIPK-GILMIGPPGTGKTYLTKAVAG 220
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
+ + +D ++ + SRV
Sbjct: 221 EAGVPFFSISGSDF-----VEMFVGVGASRVRDLFEQAKKSAPCIIFIDEIDAVGRKRGA 275
Query: 297 -----------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNY 345
TL+ LL +DG EG II+ TN + LDPALLRPGR D++
Sbjct: 276 GLGGGHDEREQTLNQLLVEMDG--FGINEGIIIVAATNRPDILDPALLRPGRFDRQVM-- 331
Query: 346 LGISHHHLYEQMLIMEMNGTP 366
+G EQ+L + G P
Sbjct: 332 VGAPDIKGREQILQVHAKGKP 352
>sp|Q6LUJ8|FTSH_PHOPR ATP-dependent zinc metalloprotease FtsH OS=Photobacterium profundum
GN=ftsH PE=3 SV=1
Length = 696
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 46/205 (22%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + +D R+ + + G++ G LL GPPGTGK+ L +
Sbjct: 173 QIKTTFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-PTGILLVGPPGTGKTLLAKA 231
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 232 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 286
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 287 RGAGVGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDRQVV- 345
Query: 345 YLGISHHHLYEQMLIMEMNGTPAEA 369
+G+ EQ+L + M P E
Sbjct: 346 -VGLPDVRGREQILKVHMRKVPLEG 369
>sp|D0LWB8|FTSH_HALO1 ATP-dependent zinc metalloprotease FtsH OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=ftsH PE=3 SV=1
Length = 682
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 48/179 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q+ +TFKD+A E K + + + ++ K++ R GR+ K G L+ GPPGTGK+ L +
Sbjct: 186 QNKVTFKDVAGVEEAKDEVEEIIAFLKDPKKFTRLGGRIPK-GVLMMGPPGTGKTLLARA 244
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 245 IAGEAGVPFFSISGSDF-----VEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRH 299
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG S +G I++ TN + LDPALLRPGR D+R
Sbjct: 300 RGAGLGGGHDEREQTLNQLLVEMDGFES--NDGVILIAATNRPDVLDPALLRPGRFDRR 356
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 49/175 (28%)
Query: 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267
F D+A +K I + +D R+ E YRR G RG L+ GPPGTGK+ + ++A
Sbjct: 178 FSDVAGYDGVKAEIAEVVDFLRS-PERYRRAGAAIPRGVLMVGPPGTGKTLMARAVAG-- 234
Query: 268 KFDIYHLDLTDIQFSSDLQFLLLTMPSRV------------------------------- 296
+ + L +T F ++ + SRV
Sbjct: 235 EAGVPFLSVTGSSF---VEMFVGVGASRVRDLFEEARKHAPCIVFVDEIDAIGQRRAGAG 291
Query: 297 ----------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG +G ++L TN E LDPALLRPGR D++
Sbjct: 292 TIVANDEREQTLNQLLAEMDGFEPA--QGVVVLAATNRPEVLDPALLRPGRFDRQ 344
>sp|C1F8X6|FTSH_ACIC5 ATP-dependent zinc metalloprotease FtsH OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=ftsH PE=3 SV=1
Length = 639
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 48/179 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q +TFKD+A E K+ + + ++ R +++ + GR+ K G LL GPPGTGK+ L +
Sbjct: 150 QKKVTFKDVAGVDEAKEELKEIIEFLREAQKFQKLGGRIPK-GVLLVGPPGTGKTLLARA 208
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 209 VAGEANVPFFSISGSDF-----VEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRH 263
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG + +G I++ TN + LDPALLRPGR D+R
Sbjct: 264 RGAGLGGGHDEREQTLNQLLVEMDGFEA--NDGVILVAATNRPDVLDPALLRPGRFDRR 320
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMA 264
+TF D+A E + + + +D R+ ++Y + GR+ K G LL GPPGTGK+ L ++A
Sbjct: 218 GITFNDVAGIDEAVEEVREVVDFLRSPEKYQKLGGRIPK-GVLLVGPPGTGKTLLAKAIA 276
Query: 265 NHLKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRV-- 296
+ L +D I F +L L + + +
Sbjct: 277 GEAGVPFFSLSGSDFVEMFVGVGAARVRDMFQQAEAKAPCIIFIDELDALGKSRGAGIMG 336
Query: 297 -------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340
TL+ LL +DG S G I++ TN E LDPALLRPGR D+
Sbjct: 337 GHDEREQTLNALLVEMDGFGSNSGV--IVMAATNRPETLDPALLRPGRFDR 385
>sp|Q67LC0|FTSH1_SYMTH ATP-dependent zinc metalloprotease FtsH 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH1 PE=3 SV=1
Length = 594
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 38/175 (21%)
Query: 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLI 260
V + ++T +D+A E+K + + +D R E YR +G RG LL GPPGTGK+ L
Sbjct: 138 VGEASVTLQDVAGLDEVKAELQEVIDFLRE-PERYRAMGARIPRGILLSGPPGTGKTLLA 196
Query: 261 ASMANHLKFDIYHLDLTD--------------------------IQFSSDLQFL------ 288
++A + +D I F ++ L
Sbjct: 197 RALAGEAGVPFFSASGSDFVELFAGTGAARVRALFDRARKAAPCIVFIDEIDALARRRGV 256
Query: 289 ---LLTMPSRVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340
T T++ LL +DG S GEG I++ TN + LDPA+LRPGR D+
Sbjct: 257 GAGGGTEEREQTINQLLVEMDGFDS--GEGVIVVAATNRPDVLDPAVLRPGRFDR 309
>sp|C6V4R9|FTSH_NEORI ATP-dependent zinc metalloprotease FtsH OS=Neorickettsia risticii
(strain Illinois) GN=ftsH PE=3 SV=1
Length = 636
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 69/229 (30%)
Query: 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASM 263
+ +TF D+A E K+ + + ++ R K++ + G++ K G LL GPPGTGK+ L ++
Sbjct: 152 NKVTFHDVAGIDEAKEELAEIVEFLREPKKFQKLGGKIPK-GCLLIGPPGTGKTLLAKAI 210
Query: 264 ANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------------------------- 296
A K + + +D ++ + SRV
Sbjct: 211 AGEAKVPFFSISGSDF-----VEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGRHR 265
Query: 297 -------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAF 343
TL+ LL +DG + EG II+ TN + LDPALLRPGR D++
Sbjct: 266 GVGFGGGNDEREQTLNQLLVEMDGFEA--NEGVIIIAATNRPDVLDPALLRPGRFDRQ-- 321
Query: 344 NYLGISHHHLYEQMLIMEMN-----------------GTPAEAAGELAN 375
+ IS + + I+E++ GTP + +LAN
Sbjct: 322 --ITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARGTPGFSGADLAN 368
>sp|B9L3S8|FTSH2_THERP ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
Length = 699
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 46/218 (21%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF D+A + E K + + +D +N +Y+R +G RG LL GPPGTGK+ L ++A
Sbjct: 248 VTFADVAGEEEAKAELAQVVDFLKNPAKYHR-IGARLPRGVLLVGPPGTGKTLLARAVAG 306
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSWSWC 312
+ + ++ ++ + SRV + + FID G +
Sbjct: 307 EAGVPFFSVSASEF-----VEMFVGVGASRVRDLFERAKAQAPSIIFIDELDAVGRQRFA 361
Query: 313 GEG-------------------------RIILFWTNHKEKLDPALLRPGRMDQRAFNYLG 347
G G +++ TN + LDPALLRPGR D++ +G
Sbjct: 362 GLGVGNDEREQTLNQLLVEMDGFEAHTDVVVIAATNRPDVLDPALLRPGRFDRQVV--VG 419
Query: 348 ISHHHLYEQMLIMEMNGTPAEAAGELANSAEAQVSLQG 385
+ +L + G P +L A A G
Sbjct: 420 LPDKRGRAAILRIHTRGIPIAPDVDLEGLAAATPGFSG 457
>sp|P46469|FTSH_LACLA ATP-dependent zinc metalloprotease FtsH OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=ftsH PE=3 SV=1
Length = 695
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 56/208 (26%)
Query: 169 PHVLKKAKAVKEDCNTVKLHTVLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIF 228
P K++A ++D T K+ F D+A E K+ +++ +D
Sbjct: 172 PMSFGKSRAKQQDGKTSKVR-------------------FADVAGSEEEKQELVEVVDFL 212
Query: 229 RNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI------QFS 282
+N K+Y+ R+ G LL GPPGTGK+ L ++A Y + +D +
Sbjct: 213 KNPKKYHDLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGA 271
Query: 283 SDLQFLL----LTMPSRV-------------------------TLSGLLNFIDGSWSWCG 313
S ++ L T PS + TL+ LL +DG + G
Sbjct: 272 SRVRDLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-FQDDG 330
Query: 314 EGRIILFWTNHKEKLDPALLRPGRMDQR 341
I++ TN + LDPALLRPGR D++
Sbjct: 331 NSVIVIAATNRSDVLDPALLRPGRFDRK 358
>sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsH PE=3
SV=1
Length = 635
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 67/229 (29%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q +TF D+A E K+ + + +D R+ ++ G++ K G L+ GPPGTGK+ L +
Sbjct: 145 QIKVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKIPK-GILMVGPPGTGKTLLARA 203
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A K + + +D ++ + SRV
Sbjct: 204 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQ 258
Query: 297 --------------TLSGLLNFIDGSWSWCG-EGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ +L +DG + G +G I++ TN + LDPAL RPGR D++
Sbjct: 259 RGAGLGGGHDEREQTLNQMLVEMDG---FSGNDGVIVIAATNRPDVLDPALTRPGRFDRQ 315
Query: 342 AFNYLGISHHHLYEQMLIMEM---------------NGTPAEAAGELAN 375
+G+ EQ+L + M GTP + +LAN
Sbjct: 316 VV--VGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLAN 362
>sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ftsH PE=3 SV=1
Length = 644
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 52/230 (22%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + ++ R + + G++ K G L+ GPPGTGK+ L +
Sbjct: 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 205 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV- 318
Query: 345 YLGISHHHLYEQMLIMEMNGTPAEAAGELANSAEAQVSLQGLIKFLHVKL 394
+G+ EQ+L + M P LA +A + +G F L
Sbjct: 319 -VGLPDVRGREQILKVHMRRVP------LATDIDAAIIARGTPGFSGADL 361
>sp|P63344|FTSH_SALTI ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhi GN=ftsH
PE=3 SV=1
Length = 644
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 52/230 (22%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + ++ R + + G++ K G L+ GPPGTGK+ L +
Sbjct: 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 205 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV- 318
Query: 345 YLGISHHHLYEQMLIMEMNGTPAEAAGELANSAEAQVSLQGLIKFLHVKL 394
+G+ EQ+L + M P LA +A + +G F L
Sbjct: 319 -VGLPDVRGREQILKVHMRRVP------LATDIDAAIIARGTPGFSGADL 361
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 37/144 (25%)
Query: 233 EYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI------------- 279
E ++RVG +G LLFGPPGTGK+ L ++A+ L + + + I
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 280 ---QFSSDLQFLLLTMPS-------------------RVTLSGLLNFIDGSWSWCGEGRI 317
++ D Q ++ M + TL LLN +DG + G+ ++
Sbjct: 234 EMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-FDSLGKVKV 292
Query: 318 ILFWTNHKEKLDPALLRPGRMDQR 341
I+ TN + LDPALLRPGR+D++
Sbjct: 293 IM-ATNRPDTLDPALLRPGRLDRK 315
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 39/174 (22%)
Query: 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASM 263
H +TFKD+A E K+ + + ++ +N K++ R G++ K G LL GPPGTGK+ L ++
Sbjct: 206 HRVTFKDVAGLDEAKEEVAEIVEFLKNPKKFTRLGGKLPK-GVLLVGPPGTGKTLLAKAV 264
Query: 264 ANHLKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRV- 296
A + + +D I F ++ + + +
Sbjct: 265 AGEAGVPFFSISGSDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDAIGRSRGRGIM 324
Query: 297 ---------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG + +G II+ TN + LDPALLRPGR D++
Sbjct: 325 MGANDERENTLNQLLVEMDGFNT--DKGVIIMAATNRPDVLDPALLRPGRFDRQ 376
>sp|Q8X9L0|FTSH_ECO57 ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli O157:H7
GN=ftsH PE=3 SV=1
Length = 644
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 61/226 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + ++ R + + G++ K G L+ GPPGTGK+ L +
Sbjct: 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 205 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV- 318
Query: 345 YLGISHHHLYEQMLIMEM---------------NGTPAEAAGELAN 375
+G+ EQ+L + M GTP + +LAN
Sbjct: 319 -VGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 363
>sp|P0AAI4|FTSH_SHIFL ATP-dependent zinc metalloprotease FtsH OS=Shigella flexneri
GN=ftsH PE=3 SV=1
Length = 644
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 61/226 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + ++ R + + G++ K G L+ GPPGTGK+ L +
Sbjct: 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 205 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV- 318
Query: 345 YLGISHHHLYEQMLIMEM---------------NGTPAEAAGELAN 375
+G+ EQ+L + M GTP + +LAN
Sbjct: 319 -VGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 363
>sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain
K12) GN=ftsH PE=1 SV=1
Length = 644
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 61/226 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q TF D+A E K+ + + ++ R + + G++ K G L+ GPPGTGK+ L +
Sbjct: 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSW 309
+A K + + +D ++ + SRV + + FID G
Sbjct: 205 IAGEAKVPFFTISGSDF-----VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 310 SWCG-------------------------EGRIILFWTNHKEKLDPALLRPGRMDQRAFN 344
G EG I++ TN + LDPALLRPGR D++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV- 318
Query: 345 YLGISHHHLYEQMLIMEM---------------NGTPAEAAGELAN 375
+G+ EQ+L + M GTP + +LAN
Sbjct: 319 -VGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 363
>sp|B8I4B9|FTSH_CLOCE ATP-dependent zinc metalloprotease FtsH OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=ftsH PE=3 SV=1
Length = 619
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 50/204 (24%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
+ +TF+++A E K+ + + ++ + K++ R+ K G LL GPPGTGK+ L +
Sbjct: 158 KKKITFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPK-GVLLVGPPGTGKTLLAKA 216
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
++ + + +D ++ + SRV
Sbjct: 217 VSGEAGVPFFSISGSDF-----VEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRH 271
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA 342
TL+ LL +DG EG IIL TN + LDPALLRPGR D+R
Sbjct: 272 RGAGLGGGHDEREQTLNQLLVEMDGFG--INEGVIILAATNRPDILDPALLRPGRFDRRV 329
Query: 343 FNYLGISHHHLYEQMLIMEMNGTP 366
+G+ EQ+L + G P
Sbjct: 330 --VVGLPDIKGREQILKVHSRGKP 351
>sp|D1C8C0|FTSH4_SPHTD ATP-dependent zinc metalloprotease FtsH 4 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsh4 PE=3
SV=1
Length = 658
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 46/199 (23%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF D+A + E K + + +D RN +Y+ +G RG LL GPPGTGK+ L ++A
Sbjct: 200 VTFADVAGEEEAKAELSEVVDFLRNPMKYHA-IGARLPRGILLVGPPGTGKTLLARAVAG 258
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV--------TLSGLLNFID-----GSWSWC 312
+ + ++ ++ + SRV + + F+D G +
Sbjct: 259 EAGVPFFSVSASEF-----VEMFVGVGASRVRDLFERAKASAPSIMFVDELDAVGRQRFA 313
Query: 313 GEGR-------------------------IILFWTNHKEKLDPALLRPGRMDQRAFNYLG 347
G G I++ TN + LDPALLRPGR D++ +G
Sbjct: 314 GLGGGNDEREQTLNQLLVEMDGFEPHQDVIVIAATNRPDVLDPALLRPGRFDRQV--TVG 371
Query: 348 ISHHHLYEQMLIMEMNGTP 366
+ E +L + G P
Sbjct: 372 LPDRRGREAILRIHTRGIP 390
>sp|A9EXK6|FTSH4_SORC5 ATP-dependent zinc metalloprotease FtsH 4 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH4 PE=3 SV=1
Length = 648
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q+ +TF D+A E K + + + ++ K++ + GR+ K G L+ GPPGTGK+ L +
Sbjct: 159 QNKVTFADVAGIDEAKDELEEIIAFLKDPKKFQKLGGRIPK-GVLMMGPPGTGKTLLARA 217
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 218 IAGEAGVPFFSISGSDF-----VEMFVGVGASRVRDLFEQGKKHAPCIIFIDEIDAVGRH 272
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG S EG II+ TN + LDPA+LRPGR D+R
Sbjct: 273 RGAGLGGGHDEREQTLNQLLVEMDGFES--NEGVIIVAATNRPDVLDPAILRPGRFDRR 329
>sp|Q3B6R3|FTSH_PELLD ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon luteolum
(strain DSM 273) GN=ftsH PE=3 SV=1
Length = 706
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 49/177 (27%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TFKD+A E K +++ +D ++ K+Y R G++ K G LL GPPGTGK+ L ++A
Sbjct: 196 ITFKDVAGLDEAKAEVMEVVDFLKDPKKYTRLGGKLPK-GVLLVGPPGTGKTLLAKAVAG 254
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
+ + +D ++ + +RV
Sbjct: 255 EADVPFFSISGSDF-----VEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDAVGRSRGK 309
Query: 297 ------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG + +G I++ TN + LDPALLRPGR D++
Sbjct: 310 GAMMGGNDERENTLNQLLVEMDGFAT--DKGVILMAATNRPDVLDPALLRPGRFDRQ 364
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 48/176 (27%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF D+A E+K+ + + +D ++ K Y R+ K G LL+GPPGTGK+ L ++A
Sbjct: 154 VTFDDVAGIDEVKEELAEIVDFLKHPKRYLELGARIPK-GVLLYGPPGTGKTLLAKAVAG 212
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
+ + +D ++ + SRV
Sbjct: 213 EAGVPFFSISGSDF-----VEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGA 267
Query: 297 -----------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG +S EG II+ TN + LDPALLRPGR D++
Sbjct: 268 GYGGGHDEREQTLNQLLVEMDG-FS-ANEGIIIIAATNRPDVLDPALLRPGRFDRQ 321
>sp|B9MPK5|FTSH_CALBD ATP-dependent zinc metalloprotease FtsH OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=ftsH PE=3 SV=1
Length = 616
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 48/180 (26%)
Query: 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIA 261
L+ +TF D+A E K+ + + +D +N ++Y R+ K G LL GPPGTGK+ L
Sbjct: 161 LKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELGARIPK-GILLVGPPGTGKTLLAK 219
Query: 262 SMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV------------------------- 296
++A + + +D ++ + +RV
Sbjct: 220 AVAGEAGVPFFSISGSDF-----VEMFVGVGAARVRDLFDQAKRNAPCVVFIDEIDAVGR 274
Query: 297 ---------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG + EG I++ TN + LDPALLRPGR D++
Sbjct: 275 HRGAGLGGGHDEREQTLNQLLVEMDGFGT--NEGIIVMAATNRPDILDPALLRPGRFDRQ 332
>sp|A1AT11|FTSH_PELPD ATP-dependent zinc metalloprotease FtsH OS=Pelobacter propionicus
(strain DSM 2379) GN=ftsH PE=3 SV=1
Length = 623
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 48/176 (27%)
Query: 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMA 264
A++FKD+A + K+ + + +D RN K++ R G+V K G LL GPPGTGK+ L ++A
Sbjct: 170 AVSFKDVAGMEDSKQELKEVVDYLRNPKQFARIGGKVPK-GVLLVGPPGTGKTLLARAVA 228
Query: 265 NHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV---------------------------- 296
+ + + QF ++ + SRV
Sbjct: 229 GEAGVAFFSISAS--QF---IEMFVGVGASRVRDLFTNAKKAAPSIVFIDELDAVGRSRG 283
Query: 297 ------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340
TL+ LL+ +DG E I+L TN + LDPALLRPGR D+
Sbjct: 284 AGFGGGHDEREQTLNQLLSEMDGFDQH--EEVIVLAATNRPDVLDPALLRPGRFDR 337
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 49/180 (27%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
+ +TF D+A E+K + + +D +N + YR +G +G LL+GPPGTGK+ L +
Sbjct: 146 ESPVTFADVAGMDEVKGELEEIVDYLKN-PDKYRAIGARIPKGVLLYGPPGTGKTLLARA 204
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + L SS ++ + SRV
Sbjct: 205 VAGEAGVPFFAL-----SGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDAVGRQ 259
Query: 297 ---------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG ++ EG I++ TN + LD ALLRPGR D++
Sbjct: 260 RGSAAVVGGHDEREQTLNQLLTEMDGFGAY--EGVIVMAATNRPDVLDKALLRPGRFDRQ 317
>sp|C8WEG0|FTSH_ZYMMN ATP-dependent zinc metalloprotease FtsH OS=Zymomonas mobilis subsp.
mobilis (strain NCIB 11163) GN=ftsH PE=3 SV=1
Length = 662
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 61/226 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
Q +TFKD+A E ++ + + +D ++ + R G++ K G LL GPPGTGK+ L +
Sbjct: 173 QGRVTFKDIAGIEEAREELEEIVDFLKDPTRFSRLGGKIPK-GALLVGPPGTGKTLLARA 231
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 232 IAGEAGVPFFSISGSDF-----VEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRH 286
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA 342
TL+ LL +DG + EG IIL TN + LDPALLRPGR D++
Sbjct: 287 RGAGLGNGNDEREQTLNQLLVEMDGFEA--NEGIIILAATNRPDVLDPALLRPGRFDRQV 344
Query: 343 F-------NYLGISHHHLYEQMLIMEMN------GTPAEAAGELAN 375
L I H+ + L +++ GTP + +LAN
Sbjct: 345 IVPRPDIEGRLKILQVHMKKTPLAPDVDVRTIARGTPGFSGADLAN 390
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 49/177 (27%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+ F D+A E K+ I++ + +N K +Y R+G RG +L GPPGTGK+ L + A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKFLKNPK-FYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
++ L ++ +F L+ + PSRV
Sbjct: 352 EA--NVPFLSVSGSEF---LEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGR 406
Query: 297 ------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
TL+ LL +DG S E ++ TN + LDPALLRPGR D++
Sbjct: 407 GGQFGSNDERESTLNQLLVEMDGFTS--SEHIVVFAGTNRPDVLDPALLRPGRFDRQ 461
>sp|Q6MLS7|FTSH1_BDEBA ATP-dependent zinc metalloprotease FtsH 1 OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=ftsH1 PE=3 SV=1
Length = 645
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 54/206 (26%)
Query: 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIAS 262
++ +TFK++A E K+ + + + ++ K+Y + GR+ K G LL G PGTGK+ L +
Sbjct: 157 KNRVTFKEVAGVDEAKEDLQEIVSFLKDPKKYTKLGGRIPK-GVLLVGSPGTGKTLLARA 215
Query: 263 MANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV-------------------------- 296
+A + + +D ++ + SRV
Sbjct: 216 VAGEAGVPFFTISGSDF-----VEMFVGVGASRVRDLFEQGKKNAPCLIFIDEIDAVGRH 270
Query: 297 --------------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA 342
TL+ LL +DG S EG I++ TN + LDPALLRPGR D+R
Sbjct: 271 RGAGMGGGHDEREQTLNQLLVEMDGFES--SEGVIMIAATNRPDVLDPALLRPGRFDRRV 328
Query: 343 FNYLGISHHHL--YEQMLIMEMNGTP 366
++ L EQ+L + M TP
Sbjct: 329 I----VNKPDLKGREQILAVHMRKTP 350
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 294 SRVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341
S++TLSG+LN +DG ++ EGRI++ TNH E LDPAL+R GR+D +
Sbjct: 90 SKLTLSGILNSLDGIFN--SEGRIVIMTTNHSEVLDPALIRRGRIDMQ 135
>sp|B3DV46|FTSH1_METI4 ATP-dependent zinc metalloprotease FtsH 1 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH1 PE=3 SV=1
Length = 636
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 40/216 (18%)
Query: 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMA 264
+TF D+A E K + + +D +N YR +G +G LL GPPGTGK+ L ++A
Sbjct: 176 GVTFADVAGCDEAKYELQEVVDFLKN-PSRYRALGAKIPKGVLLVGPPGTGKTLLAKAVA 234
Query: 265 NHLKFDIYHLDLTD--------------------------IQFSSDLQFLLLTMPSRV-- 296
K + + ++ I F +L + R+
Sbjct: 235 GEAKVPFFSISGSEFVEMFVGVGAARVRDLFGQAKSKAPCIVFIDELDAIGRQRGVRIQV 294
Query: 297 -------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGIS 349
TL+ LL +DG EG I+L TN E LD ALLRPGR D++ + +
Sbjct: 295 GSDEHEQTLNQLLVEMDGFDP--NEGIIVLAATNRPEILDRALLRPGRFDRQVV--VDLP 350
Query: 350 HHHLYEQMLIMEMNGTPAEAAGELANSAEAQVSLQG 385
+ E +L + G P + A+A + G
Sbjct: 351 DANGREAILRVHARGKPLSENIDFKEIAQATMGFSG 386
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 64/220 (29%)
Query: 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265
+TF+D+A E K+ + + + ++ ++ R G++ K G LL GPPGTGK+ L ++A
Sbjct: 151 VTFQDVAGIEEAKEELQEVVQFLKDPHKFQRLGGKIPK-GVLLVGPPGTGKTLLARAIAG 209
Query: 266 HLKFDIYHLDLTDIQFSSDLQFLLLTMPSRV----------------------------- 296
++L +D ++ + +RV
Sbjct: 210 EANVPFFNLSGSDF-----VEMFVGVGAARVRDMFEQGKKNAPCIIFIDEIDAVGRHRGA 264
Query: 297 -----------TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAF-- 343
TL+ LL +DG S EG I++ TN + LDPALLRPGR D++
Sbjct: 265 GLGGGHDEREQTLNQLLVEMDGFEST--EGVIMVAATNRPDVLDPALLRPGRFDRQVTVP 322
Query: 344 --NYLGISHHHLYEQMLIMEMNGTPAEAAGELANSAEAQV 381
+ LG + Q+L + MN P L++S +A+V
Sbjct: 323 NPDILGRT------QILKVHMNKVP------LSDSVDAEV 350
>sp|Q2NIN5|FTSH_AYWBP ATP-dependent zinc metalloprotease FtsH OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=ftsH PE=3
SV=1
Length = 676
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 39/205 (19%)
Query: 175 AKAVKEDCNTVKLHTVLRNCWDANNVVLQHA-MTFKDLALDSELKKMIIKDLDIFRNGKE 233
A +K+ + T + + V++ H TF D+A E K+ + + +D +N ++
Sbjct: 137 ADTIKQMGQEILASTSGKKGAKSRKVIINHKRFTFSDVAGADEEKEEMSELIDFLKNPRK 196
Query: 234 YYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD--------------- 278
Y R+ K G LL+GPPGTGK+ L ++A + +D
Sbjct: 197 YAAMGARIPK-GVLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEVYVGVGASRVRD 255
Query: 279 -----------IQFSSDLQFLLLTMPSRV--------TLSGLLNFIDGSWSWCGEGRIIL 319
I F +++ + S + TL+ LL +DG G I++
Sbjct: 256 LFKEAQLAAPCIVFIDEIEAVARKRGSNIGGSNGSEQTLNQLLVEMDGFNQKM--GVIVI 313
Query: 320 FWTNHKEKLDPALLRPGRMDQRAFN 344
TN E LD A+LRPGR D R FN
Sbjct: 314 AATNQPEVLDSAILRPGRFD-RHFN 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,326,351
Number of Sequences: 539616
Number of extensions: 5939320
Number of successful extensions: 21946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 20778
Number of HSP's gapped (non-prelim): 1239
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)