Query 048683
Match_columns 398
No_of_seqs 381 out of 2459
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 3.9E-91 8.3E-96 688.2 32.9 380 6-398 2-439 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 3.6E-35 7.9E-40 282.6 14.3 170 200-373 142-365 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 5.8E-33 1.2E-37 284.3 12.3 151 203-357 428-610 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-31 2.3E-36 271.8 14.3 152 202-357 504-687 (802)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.5E-31 5.3E-36 269.2 12.3 181 205-388 186-417 (802)
6 KOG0736 Peroxisome assembly fa 100.0 8E-31 1.7E-35 271.1 12.2 147 202-351 665-845 (953)
7 KOG0731 AAA+-type ATPase conta 100.0 4.8E-30 1E-34 269.6 14.1 151 202-357 304-490 (774)
8 KOG0734 AAA+-type ATPase conta 100.0 5.2E-30 1.1E-34 256.2 10.4 148 205-357 300-479 (752)
9 PF14363 AAA_assoc: Domain ass 100.0 3E-29 6.6E-34 205.0 11.1 97 28-125 1-98 (98)
10 KOG0727 26S proteasome regulat 100.0 8.1E-29 1.8E-33 228.8 10.6 147 203-353 149-330 (408)
11 KOG0726 26S proteasome regulat 100.0 3E-29 6.6E-34 235.5 5.9 154 200-357 176-364 (440)
12 KOG0728 26S proteasome regulat 99.9 4.5E-27 9.7E-32 217.0 10.4 153 201-357 139-326 (404)
13 KOG0735 AAA+-type ATPase [Post 99.9 1E-26 2.2E-31 239.0 13.7 165 206-374 664-879 (952)
14 COG0465 HflB ATP-dependent Zn 99.9 2.8E-27 6.2E-32 244.9 9.7 149 204-357 145-328 (596)
15 PTZ00454 26S protease regulato 99.9 4.4E-26 9.5E-31 230.0 14.6 168 202-373 138-359 (398)
16 KOG0729 26S proteasome regulat 99.9 2.4E-26 5.3E-31 213.8 9.1 154 200-357 168-356 (435)
17 TIGR03689 pup_AAA proteasome A 99.9 7.1E-26 1.5E-30 233.2 13.4 151 203-357 176-373 (512)
18 KOG0652 26S proteasome regulat 99.9 3E-26 6.4E-31 212.7 9.2 152 202-357 164-350 (424)
19 KOG0738 AAA+-type ATPase [Post 99.9 3.3E-25 7.2E-30 215.3 11.7 148 204-357 207-390 (491)
20 TIGR01243 CDC48 AAA family ATP 99.9 1.3E-24 2.7E-29 235.9 15.3 150 204-357 448-630 (733)
21 PRK03992 proteasome-activating 99.9 1.2E-24 2.6E-29 219.7 14.1 152 202-357 124-310 (389)
22 PTZ00361 26 proteosome regulat 99.9 2.3E-24 4.9E-29 219.2 13.2 154 200-357 174-362 (438)
23 COG0464 SpoVK ATPases of the A 99.9 2.3E-24 4.9E-29 224.3 11.2 151 203-357 236-418 (494)
24 CHL00195 ycf46 Ycf46; Provisio 99.9 4.6E-24 1E-28 219.8 12.7 145 204-357 223-400 (489)
25 KOG0651 26S proteasome regulat 99.9 9.2E-25 2E-29 207.0 6.5 149 205-357 128-311 (388)
26 TIGR01241 FtsH_fam ATP-depende 99.9 1.2E-23 2.5E-28 219.0 14.1 150 203-357 49-233 (495)
27 COG1223 Predicted ATPase (AAA+ 99.9 2.4E-23 5.2E-28 193.3 11.7 146 202-357 114-292 (368)
28 PLN00020 ribulose bisphosphate 99.9 6.1E-23 1.3E-27 201.0 14.7 137 234-374 139-326 (413)
29 KOG0739 AAA+-type ATPase [Post 99.9 2.6E-23 5.6E-28 196.2 6.9 164 204-373 128-328 (439)
30 CHL00176 ftsH cell division pr 99.9 2.1E-22 4.5E-27 213.6 14.1 150 203-357 177-361 (638)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.5E-22 3.3E-27 226.6 11.7 161 230-392 1617-1883(2281)
32 TIGR01242 26Sp45 26S proteasom 99.9 6.1E-22 1.3E-26 198.5 13.2 152 202-357 115-301 (364)
33 KOG0732 AAA+-type ATPase conta 99.9 2.2E-22 4.9E-27 217.0 9.6 160 202-365 258-455 (1080)
34 KOG0737 AAA+-type ATPase [Post 99.9 3.7E-22 8.1E-27 193.7 8.7 149 205-357 88-269 (386)
35 PRK10733 hflB ATP-dependent me 99.8 1E-20 2.2E-25 202.1 13.1 149 204-357 147-330 (644)
36 KOG0741 AAA+-type ATPase [Post 99.8 1.5E-20 3.2E-25 188.6 8.4 154 200-357 210-409 (744)
37 TIGR01243 CDC48 AAA family ATP 99.8 2.6E-20 5.7E-25 202.3 10.7 150 204-357 173-354 (733)
38 KOG0730 AAA+-type ATPase [Post 99.8 1.1E-19 2.3E-24 187.1 12.8 148 204-357 180-359 (693)
39 KOG0740 AAA+-type ATPase [Post 99.8 5E-19 1.1E-23 177.1 10.8 167 202-373 146-349 (428)
40 KOG0744 AAA+-type ATPase [Post 99.6 1.1E-16 2.5E-21 152.9 5.5 145 207-357 140-335 (423)
41 PF00004 AAA: ATPase family as 99.6 3.4E-16 7.3E-21 132.9 4.2 95 246-342 1-128 (132)
42 PF05496 RuvB_N: Holliday junc 99.6 3.5E-14 7.5E-19 131.4 12.2 174 202-387 17-223 (233)
43 KOG0742 AAA+-type ATPase [Post 99.5 1.4E-14 3.1E-19 142.2 9.1 185 155-357 296-523 (630)
44 PRK04195 replication factor C 99.5 7.6E-14 1.7E-18 145.0 13.9 178 194-389 3-206 (482)
45 PRK14956 DNA polymerase III su 99.5 7.3E-14 1.6E-18 142.9 12.4 169 202-390 11-227 (484)
46 PRK14962 DNA polymerase III su 99.5 1.2E-13 2.7E-18 142.5 13.1 169 202-390 7-223 (472)
47 KOG0989 Replication factor C, 99.5 8.9E-14 1.9E-18 132.7 10.6 171 193-388 24-233 (346)
48 PRK07003 DNA polymerase III su 99.5 1.8E-13 3.8E-18 145.3 13.3 170 201-390 8-225 (830)
49 PRK00080 ruvB Holliday junctio 99.5 6.7E-13 1.5E-17 131.4 15.6 174 202-387 18-224 (328)
50 PRK12323 DNA polymerase III su 99.5 2.7E-13 5.8E-18 142.3 13.0 167 202-388 9-228 (700)
51 PRK14960 DNA polymerase III su 99.5 3E-13 6.6E-18 142.1 13.1 170 201-390 7-224 (702)
52 PLN03025 replication factor C 99.5 3.5E-13 7.6E-18 132.9 12.9 170 194-388 2-203 (319)
53 PF05673 DUF815: Protein of un 99.5 1.5E-12 3.2E-17 122.0 15.4 131 193-334 13-160 (249)
54 PRK14958 DNA polymerase III su 99.5 5.9E-13 1.3E-17 138.7 13.6 170 201-390 8-225 (509)
55 PRK14964 DNA polymerase III su 99.4 6.5E-13 1.4E-17 137.0 13.0 169 202-390 6-222 (491)
56 TIGR00635 ruvB Holliday juncti 99.4 1.7E-12 3.7E-17 126.8 14.9 165 207-383 2-199 (305)
57 PRK06645 DNA polymerase III su 99.4 9.2E-13 2E-17 136.7 13.2 175 193-391 9-235 (507)
58 COG2256 MGS1 ATPase related to 99.4 4.1E-13 8.8E-18 132.4 9.3 177 202-393 17-220 (436)
59 PRK05896 DNA polymerase III su 99.4 1.3E-12 2.8E-17 137.0 13.1 167 202-388 9-223 (605)
60 PHA02544 44 clamp loader, smal 99.4 2E-12 4.2E-17 127.0 13.1 172 192-389 8-213 (316)
61 PRK05563 DNA polymerase III su 99.4 2.5E-12 5.5E-17 135.6 14.5 168 202-389 9-224 (559)
62 PRK14961 DNA polymerase III su 99.4 2.4E-12 5.3E-17 129.2 13.6 169 202-390 9-225 (363)
63 PRK14949 DNA polymerase III su 99.4 1.8E-12 3.8E-17 140.1 13.2 167 202-388 9-223 (944)
64 COG0466 Lon ATP-dependent Lon 99.4 1.4E-12 3E-17 136.3 11.8 122 209-340 323-489 (782)
65 PRK14963 DNA polymerase III su 99.4 2.6E-12 5.7E-17 133.7 13.3 170 202-391 7-223 (504)
66 TIGR00763 lon ATP-dependent pr 99.4 2.3E-12 5E-17 141.0 13.5 136 210-357 321-500 (775)
67 PRK07994 DNA polymerase III su 99.4 2.9E-12 6.3E-17 135.9 13.2 169 202-390 9-225 (647)
68 PRK14965 DNA polymerase III su 99.4 3.8E-12 8.2E-17 134.8 14.1 169 201-389 8-224 (576)
69 PRK08691 DNA polymerase III su 99.4 3.9E-12 8.5E-17 134.8 13.8 170 201-390 8-225 (709)
70 PRK14969 DNA polymerase III su 99.4 5.6E-12 1.2E-16 132.1 14.5 169 202-390 9-225 (527)
71 PRK07133 DNA polymerase III su 99.4 3.3E-12 7.2E-17 136.4 12.4 167 202-388 11-222 (725)
72 PRK14951 DNA polymerase III su 99.4 4.8E-12 1E-16 133.9 13.2 167 202-388 9-228 (618)
73 PRK14952 DNA polymerase III su 99.4 4E-12 8.7E-17 134.0 12.6 168 202-389 6-223 (584)
74 TIGR02881 spore_V_K stage V sp 99.4 8.2E-12 1.8E-16 119.7 13.6 141 208-357 5-186 (261)
75 TIGR02397 dnaX_nterm DNA polym 99.4 5.3E-12 1.1E-16 125.7 12.1 168 202-389 7-222 (355)
76 CHL00181 cbbX CbbX; Provisiona 99.4 9.6E-12 2.1E-16 120.9 13.5 154 209-371 23-223 (287)
77 PRK14957 DNA polymerase III su 99.3 6.1E-12 1.3E-16 131.5 12.8 169 202-390 9-225 (546)
78 PRK14959 DNA polymerase III su 99.3 6.9E-12 1.5E-16 132.2 13.1 169 202-390 9-225 (624)
79 PRK14955 DNA polymerase III su 99.3 9.6E-12 2.1E-16 126.3 13.5 168 201-388 8-231 (397)
80 PRK07940 DNA polymerase III su 99.3 6.3E-12 1.4E-16 127.1 11.9 166 207-384 3-212 (394)
81 PRK14970 DNA polymerase III su 99.3 1.8E-11 4E-16 122.8 14.6 168 202-389 10-213 (367)
82 PRK07764 DNA polymerase III su 99.3 8.6E-12 1.9E-16 136.1 12.9 168 202-389 8-225 (824)
83 PRK08451 DNA polymerase III su 99.3 1.3E-11 2.8E-16 128.6 13.5 170 201-390 6-223 (535)
84 TIGR02880 cbbX_cfxQ probable R 99.3 1.7E-11 3.6E-16 119.1 12.6 152 210-370 23-221 (284)
85 PRK06305 DNA polymerase III su 99.3 2.2E-11 4.8E-16 125.4 13.4 167 202-388 10-225 (451)
86 PRK09111 DNA polymerase III su 99.3 2.3E-11 4.9E-16 128.8 12.9 168 202-389 17-237 (598)
87 PRK06647 DNA polymerase III su 99.3 2.5E-11 5.3E-16 127.9 13.0 167 202-388 9-223 (563)
88 PRK14948 DNA polymerase III su 99.3 2.7E-11 5.8E-16 129.0 13.2 166 202-387 9-224 (620)
89 PRK14954 DNA polymerase III su 99.3 2.6E-11 5.7E-16 128.6 13.1 168 201-388 8-231 (620)
90 PRK14953 DNA polymerase III su 99.3 2.1E-11 4.6E-16 126.5 12.1 168 202-389 9-224 (486)
91 KOG2004 Mitochondrial ATP-depe 99.3 2.9E-11 6.4E-16 126.0 12.0 122 209-340 411-577 (906)
92 COG2255 RuvB Holliday junction 99.3 7.1E-11 1.5E-15 112.0 12.9 170 202-383 19-221 (332)
93 PRK14971 DNA polymerase III su 99.2 8.9E-11 1.9E-15 125.0 14.7 168 201-388 9-225 (614)
94 PRK13342 recombination factor 99.2 5.5E-11 1.2E-15 121.4 12.6 163 202-389 5-200 (413)
95 PRK14950 DNA polymerase III su 99.2 7.1E-11 1.5E-15 125.5 13.7 168 202-389 9-225 (585)
96 PRK12402 replication factor C 99.2 8.6E-11 1.9E-15 116.0 12.7 171 194-390 4-231 (337)
97 PRK00440 rfc replication facto 99.2 1.4E-10 3.1E-15 113.5 13.9 174 193-391 5-209 (319)
98 COG2812 DnaX DNA polymerase II 99.2 1E-10 2.2E-15 120.8 12.4 135 202-357 9-187 (515)
99 COG2607 Predicted ATPase (AAA+ 99.2 1.2E-10 2.7E-15 108.0 9.9 125 200-333 51-192 (287)
100 TIGR02639 ClpA ATP-dependent C 99.1 2E-10 4.4E-15 125.1 10.3 170 204-391 177-403 (731)
101 TIGR02902 spore_lonB ATP-depen 99.1 8.1E-10 1.8E-14 116.1 13.2 68 194-278 54-131 (531)
102 PRK10787 DNA-binding ATP-depen 99.1 6.8E-10 1.5E-14 121.2 11.3 133 208-352 320-497 (784)
103 TIGR02640 gas_vesic_GvpN gas v 99.0 2.5E-09 5.4E-14 102.7 13.0 147 244-395 22-238 (262)
104 PF07728 AAA_5: AAA domain (dy 99.0 3.2E-10 7E-15 97.8 4.8 92 245-338 1-139 (139)
105 PRK13341 recombination factor 99.0 2.2E-09 4.8E-14 116.0 11.7 178 194-391 17-223 (725)
106 KOG0991 Replication factor C, 99.0 7.2E-10 1.6E-14 102.5 6.7 176 194-390 16-219 (333)
107 PRK06893 DNA replication initi 99.0 4.9E-09 1.1E-13 98.7 12.1 169 200-387 7-205 (229)
108 PRK05564 DNA polymerase III su 99.0 9.3E-09 2E-13 101.2 13.9 116 207-340 2-146 (313)
109 KOG1969 DNA replication checkp 99.0 6.4E-09 1.4E-13 109.1 13.1 185 194-387 260-512 (877)
110 PRK07471 DNA polymerase III su 99.0 9.5E-09 2.1E-13 103.1 14.0 122 202-341 12-195 (365)
111 KOG2028 ATPase related to the 99.0 1.9E-09 4.1E-14 105.3 8.3 174 202-390 131-341 (554)
112 TIGR03345 VI_ClpV1 type VI sec 98.9 4.2E-09 9.1E-14 116.2 11.5 169 203-389 181-406 (852)
113 PRK10865 protein disaggregatio 98.9 1.8E-09 3.8E-14 119.4 7.6 137 203-357 172-349 (857)
114 PRK11034 clpA ATP-dependent Cl 98.9 5.9E-09 1.3E-13 113.3 10.6 68 210-281 459-526 (758)
115 PRK00149 dnaA chromosomal repl 98.9 5.4E-08 1.2E-12 100.5 16.5 219 148-380 36-317 (450)
116 PRK11034 clpA ATP-dependent Cl 98.9 5.7E-09 1.2E-13 113.4 9.4 164 207-390 184-406 (758)
117 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.6E-08 3.5E-13 94.1 11.1 70 200-280 6-78 (226)
118 PRK08903 DnaA regulatory inact 98.9 1.7E-08 3.7E-13 94.5 11.1 168 200-384 9-198 (227)
119 TIGR03346 chaperone_ClpB ATP-d 98.9 1.4E-08 2.9E-13 112.6 11.7 172 203-392 167-395 (852)
120 COG0464 SpoVK ATPases of the A 98.8 6.3E-09 1.4E-13 108.6 7.6 123 229-357 4-158 (494)
121 PRK09112 DNA polymerase III su 98.8 5.2E-08 1.1E-12 97.4 13.7 164 202-386 16-241 (351)
122 TIGR00362 DnaA chromosomal rep 98.8 3.3E-08 7.3E-13 100.7 12.3 159 202-375 103-298 (405)
123 TIGR02928 orc1/cdc6 family rep 98.8 1.8E-07 3.9E-12 93.5 16.2 174 207-393 13-254 (365)
124 CHL00095 clpC Clp protease ATP 98.8 3E-08 6.4E-13 109.6 11.1 167 207-391 177-399 (821)
125 TIGR02639 ClpA ATP-dependent C 98.8 3.8E-08 8.3E-13 107.4 11.8 64 209-280 454-521 (731)
126 PRK08727 hypothetical protein; 98.8 8.8E-08 1.9E-12 90.4 12.7 169 200-388 10-207 (233)
127 PRK08084 DNA replication initi 98.8 7.2E-08 1.6E-12 91.1 11.7 174 200-388 13-212 (235)
128 PRK11331 5-methylcytosine-spec 98.7 2.6E-08 5.7E-13 101.4 8.6 27 243-269 194-220 (459)
129 smart00763 AAA_PrkA PrkA AAA d 98.7 3.7E-08 8E-13 97.8 9.3 64 206-276 47-118 (361)
130 COG0714 MoxR-like ATPases [Gen 98.7 4.5E-08 9.8E-13 97.0 9.9 110 243-356 43-196 (329)
131 TIGR02903 spore_lon_C ATP-depe 98.7 9E-08 2E-12 102.4 12.9 65 202-279 147-221 (615)
132 PRK05707 DNA polymerase III su 98.7 8.8E-08 1.9E-12 94.9 11.8 133 242-383 21-201 (328)
133 PRK06620 hypothetical protein; 98.7 4.4E-08 9.5E-13 91.4 8.7 170 200-388 7-192 (214)
134 TIGR00678 holB DNA polymerase 98.7 6.1E-08 1.3E-12 88.1 9.4 129 242-380 13-186 (188)
135 PRK07399 DNA polymerase III su 98.7 1.5E-07 3.3E-12 92.7 12.8 160 207-388 2-224 (314)
136 cd00009 AAA The AAA+ (ATPases 98.7 6.1E-08 1.3E-12 82.1 8.6 96 243-340 19-145 (151)
137 PRK08058 DNA polymerase III su 98.7 1.2E-07 2.6E-12 94.0 12.0 116 207-340 3-163 (329)
138 PF03215 Rad17: Rad17 cell cyc 98.7 1E-07 2.2E-12 99.7 11.6 73 190-274 4-76 (519)
139 PRK05342 clpX ATP-dependent pr 98.7 5.4E-08 1.2E-12 99.1 9.2 74 207-280 68-145 (412)
140 PF07726 AAA_3: ATPase family 98.7 6.7E-09 1.5E-13 88.4 1.9 91 246-338 2-129 (131)
141 PRK05642 DNA replication initi 98.7 2E-07 4.4E-12 88.0 12.1 171 200-383 10-206 (234)
142 PRK14086 dnaA chromosomal repl 98.7 1.4E-07 3E-12 99.5 11.8 161 202-375 281-476 (617)
143 TIGR01650 PD_CobS cobaltochela 98.6 5.6E-08 1.2E-12 95.5 7.5 113 243-359 64-230 (327)
144 PTZ00112 origin recognition co 98.6 4E-07 8.7E-12 98.4 14.4 170 209-392 755-988 (1164)
145 PRK13407 bchI magnesium chelat 98.6 7.5E-08 1.6E-12 95.4 8.3 52 203-267 2-53 (334)
146 PRK14088 dnaA chromosomal repl 98.6 2.3E-07 5E-12 95.5 11.7 159 202-375 98-293 (440)
147 KOG0736 Peroxisome assembly fa 98.6 3.2E-07 6.8E-12 97.1 11.9 110 242-357 430-571 (953)
148 PRK10865 protein disaggregatio 98.6 3.9E-07 8.5E-12 101.0 13.3 69 208-280 567-638 (857)
149 TIGR00382 clpX endopeptidase C 98.6 1.7E-07 3.7E-12 95.2 9.3 70 210-279 78-152 (413)
150 TIGR03345 VI_ClpV1 type VI sec 98.6 1.7E-07 3.7E-12 103.6 9.4 67 209-280 566-636 (852)
151 PRK00411 cdc6 cell division co 98.6 1.7E-06 3.6E-11 87.5 15.8 64 207-279 28-96 (394)
152 TIGR03346 chaperone_ClpB ATP-d 98.6 4.5E-07 9.7E-12 100.6 12.2 68 209-280 565-635 (852)
153 PRK12422 chromosomal replicati 98.5 1.9E-07 4.1E-12 96.2 8.5 128 243-375 141-301 (445)
154 COG0470 HolB ATPase involved i 98.5 3E-07 6.4E-12 90.0 9.0 118 210-340 2-162 (325)
155 CHL00081 chlI Mg-protoporyphyr 98.5 2.4E-07 5.2E-12 92.2 8.4 51 205-268 13-63 (350)
156 PHA02244 ATPase-like protein 98.5 3E-07 6.6E-12 91.5 7.7 33 244-276 120-152 (383)
157 PRK06964 DNA polymerase III su 98.5 1.5E-06 3.2E-11 86.5 12.2 109 241-358 19-200 (342)
158 KOG0990 Replication factor C, 98.5 2.6E-07 5.5E-12 89.3 6.4 179 192-391 28-238 (360)
159 PF00308 Bac_DnaA: Bacterial d 98.5 1.3E-06 2.8E-11 81.8 10.7 161 204-376 3-197 (219)
160 CHL00095 clpC Clp protease ATP 98.4 9.9E-07 2.1E-11 97.6 11.5 68 209-280 509-579 (821)
161 TIGR00390 hslU ATP-dependent p 98.4 2.4E-07 5.3E-12 93.5 5.9 70 210-279 13-83 (441)
162 PRK07993 DNA polymerase III su 98.4 1.7E-06 3.7E-11 86.0 11.9 136 241-385 22-204 (334)
163 TIGR00602 rad24 checkpoint pro 98.4 5.9E-07 1.3E-11 95.8 9.1 69 193-273 72-140 (637)
164 PRK04132 replication factor C 98.4 8.4E-07 1.8E-11 97.1 10.1 141 246-390 567-736 (846)
165 PRK08181 transposase; Validate 98.4 3.2E-07 6.9E-12 88.4 5.6 37 243-279 106-145 (269)
166 PRK08116 hypothetical protein; 98.4 5.9E-07 1.3E-11 86.6 7.5 70 205-279 81-153 (268)
167 PF13177 DNA_pol3_delta2: DNA 98.4 1.6E-06 3.5E-11 77.3 9.7 90 241-334 17-151 (162)
168 PRK09087 hypothetical protein; 98.4 1.5E-06 3.3E-11 81.7 9.6 165 200-383 12-193 (226)
169 PF07724 AAA_2: AAA domain (Cd 98.4 3.2E-07 6.9E-12 82.6 4.8 39 243-281 3-45 (171)
170 smart00382 AAA ATPases associa 98.4 5.2E-07 1.1E-11 75.4 5.8 37 243-279 2-41 (148)
171 COG0542 clpA ATP-binding subun 98.4 8.4E-07 1.8E-11 95.6 8.3 107 209-323 491-642 (786)
172 PRK05201 hslU ATP-dependent pr 98.4 5.2E-07 1.1E-11 91.2 6.2 83 210-292 16-107 (443)
173 KOG0735 AAA+-type ATPase [Post 98.4 1.7E-06 3.8E-11 91.0 9.9 135 209-357 408-581 (952)
174 PRK06871 DNA polymerase III su 98.4 7E-06 1.5E-10 81.1 13.8 93 242-340 23-160 (325)
175 PRK08769 DNA polymerase III su 98.3 6.5E-06 1.4E-10 81.2 13.2 135 241-385 24-208 (319)
176 PRK14087 dnaA chromosomal repl 98.3 2.7E-06 5.9E-11 87.9 10.7 173 205-390 111-324 (450)
177 PRK12377 putative replication 98.3 1.9E-06 4E-11 82.2 7.7 69 204-279 69-140 (248)
178 PF00158 Sigma54_activat: Sigm 98.3 2.7E-06 5.9E-11 76.3 8.4 68 211-290 1-71 (168)
179 TIGR02030 BchI-ChlI magnesium 98.3 2E-06 4.2E-11 85.6 8.1 48 207-267 2-49 (337)
180 PRK07952 DNA replication prote 98.3 8.1E-07 1.8E-11 84.4 4.8 71 202-279 65-138 (244)
181 PF06068 TIP49: TIP49 C-termin 98.2 2.8E-06 6.1E-11 84.2 8.0 77 208-292 23-106 (398)
182 smart00350 MCM minichromosome 98.2 6.1E-06 1.3E-10 86.6 9.4 141 210-357 204-395 (509)
183 PRK13531 regulatory ATPase Rav 98.2 1.6E-05 3.5E-10 81.9 12.2 26 243-268 39-64 (498)
184 COG1474 CDC6 Cdc6-related prot 98.2 1.8E-05 4E-10 79.5 12.2 174 209-395 17-247 (366)
185 PRK08939 primosomal protein Dn 98.1 2.5E-06 5.4E-11 83.8 5.4 70 205-279 123-195 (306)
186 PHA02624 large T antigen; Prov 98.1 4.4E-05 9.6E-10 80.3 14.7 101 239-342 427-557 (647)
187 TIGR02442 Cob-chelat-sub cobal 98.1 6.5E-06 1.4E-10 88.6 8.7 48 207-267 2-49 (633)
188 KOG0741 AAA+-type ATPase [Post 98.1 6.8E-06 1.5E-10 84.1 7.6 144 243-394 538-720 (744)
189 COG1224 TIP49 DNA helicase TIP 98.1 6.7E-06 1.5E-10 80.7 7.0 75 209-291 39-120 (450)
190 PRK06090 DNA polymerase III su 98.1 4.8E-05 1E-09 75.1 13.0 109 241-358 23-176 (319)
191 KOG1968 Replication factor C, 98.1 1.1E-05 2.5E-10 88.5 9.0 191 193-392 308-538 (871)
192 PF01078 Mg_chelatase: Magnesi 98.0 5.3E-06 1.2E-10 76.5 5.1 46 208-268 2-47 (206)
193 PRK08699 DNA polymerase III su 98.0 1.2E-05 2.7E-10 79.6 7.3 94 241-340 19-166 (325)
194 PRK06835 DNA replication prote 98.0 1E-05 2.2E-10 80.2 6.7 36 244-279 184-222 (329)
195 PF13207 AAA_17: AAA domain; P 98.0 3.9E-06 8.4E-11 70.2 2.8 31 246-276 2-32 (121)
196 PRK11608 pspF phage shock prot 97.9 4.6E-05 9.9E-10 75.6 9.2 69 207-287 4-75 (326)
197 PRK00131 aroK shikimate kinase 97.9 9.6E-06 2.1E-10 71.9 3.8 34 242-275 3-36 (175)
198 PRK15455 PrkA family serine pr 97.9 1.9E-05 4.1E-10 82.7 6.3 66 204-276 71-137 (644)
199 COG0593 DnaA ATPase involved i 97.9 5.7E-05 1.2E-09 76.4 9.6 174 202-389 80-293 (408)
200 PRK06526 transposase; Provisio 97.9 7.7E-06 1.7E-10 78.3 2.9 36 243-278 98-136 (254)
201 COG1484 DnaC DNA replication p 97.9 2.3E-05 5E-10 75.0 5.8 66 206-279 76-144 (254)
202 TIGR01817 nifA Nif-specific re 97.8 9.1E-05 2E-09 78.3 10.1 66 204-280 191-259 (534)
203 KOG1970 Checkpoint RAD17-RFC c 97.8 2.1E-05 4.5E-10 81.0 4.8 74 192-275 69-142 (634)
204 PRK11388 DNA-binding transcrip 97.8 7.8E-05 1.7E-09 80.4 9.5 64 207-281 323-389 (638)
205 PF06309 Torsin: Torsin; Inte 97.8 3.4E-05 7.4E-10 65.6 5.1 53 209-267 25-77 (127)
206 TIGR02031 BchD-ChlD magnesium 97.8 4.2E-05 9E-10 81.7 7.0 97 244-342 17-155 (589)
207 PF12774 AAA_6: Hydrolytic ATP 97.8 8.2E-05 1.8E-09 70.2 8.0 126 243-373 32-192 (231)
208 TIGR02974 phageshock_pspF psp 97.7 0.00014 3.1E-09 72.2 9.7 58 212-280 2-62 (329)
209 COG1219 ClpX ATP-dependent pro 97.7 5.7E-05 1.2E-09 73.3 6.5 38 243-280 97-134 (408)
210 PRK08118 topology modulation p 97.7 2.2E-05 4.7E-10 70.4 3.1 32 245-276 3-34 (167)
211 PF01695 IstB_IS21: IstB-like 97.7 1.7E-05 3.7E-10 71.8 2.2 37 243-279 47-86 (178)
212 COG3829 RocR Transcriptional r 97.7 0.00014 3.1E-09 75.1 9.1 67 202-279 238-307 (560)
213 PRK06921 hypothetical protein; 97.7 4.8E-05 1E-09 73.3 5.3 37 243-279 117-157 (266)
214 COG1221 PspF Transcriptional r 97.7 0.00011 2.4E-09 74.3 7.6 76 204-290 73-152 (403)
215 PRK15424 propionate catabolism 97.7 0.00012 2.5E-09 77.2 8.0 64 206-280 216-290 (538)
216 COG1220 HslU ATP-dependent pro 97.7 7E-05 1.5E-09 73.3 5.7 69 211-279 17-86 (444)
217 PRK13947 shikimate kinase; Pro 97.7 3.6E-05 7.7E-10 68.5 3.5 32 245-276 3-34 (171)
218 PRK03839 putative kinase; Prov 97.6 3.4E-05 7.3E-10 69.5 3.2 30 246-275 3-32 (180)
219 cd00464 SK Shikimate kinase (S 97.6 3.7E-05 8.1E-10 66.9 3.4 30 246-275 2-31 (154)
220 PF08740 BCS1_N: BCS1 N termin 97.6 0.0036 7.9E-08 56.8 16.3 136 52-211 27-187 (187)
221 PRK05917 DNA polymerase III su 97.6 0.00027 5.8E-09 68.7 9.1 94 241-340 17-148 (290)
222 PF13671 AAA_33: AAA domain; P 97.6 2.8E-05 6.1E-10 66.8 2.0 29 246-274 2-30 (143)
223 PF14532 Sigma54_activ_2: Sigm 97.6 9.5E-05 2.1E-09 63.8 5.4 56 213-279 2-60 (138)
224 PRK00625 shikimate kinase; Pro 97.6 4.3E-05 9.4E-10 68.9 3.2 32 245-276 2-33 (173)
225 PRK09183 transposase/IS protei 97.6 3.8E-05 8.3E-10 73.7 3.0 37 243-279 102-141 (259)
226 PRK13949 shikimate kinase; Pro 97.6 5E-05 1.1E-09 68.2 3.2 33 244-276 2-34 (169)
227 PRK15429 formate hydrogenlyase 97.6 0.00014 3.1E-09 79.1 7.4 65 205-280 372-439 (686)
228 COG0606 Predicted ATPase with 97.6 5.3E-05 1.2E-09 77.2 3.5 48 205-267 175-222 (490)
229 KOG3347 Predicted nucleotide k 97.5 5.9E-05 1.3E-09 65.7 3.2 44 244-289 8-51 (176)
230 PRK05818 DNA polymerase III su 97.5 0.001 2.2E-08 63.6 11.3 94 241-340 5-141 (261)
231 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 7.4E-05 1.6E-09 67.2 3.5 29 246-274 2-30 (183)
232 TIGR02329 propionate_PrpR prop 97.5 0.00029 6.2E-09 74.3 8.1 75 204-290 207-284 (526)
233 KOG0745 Putative ATP-dependent 97.5 0.00021 4.5E-09 72.0 6.4 38 243-280 226-263 (564)
234 PRK13765 ATP-dependent proteas 97.5 0.00019 4.2E-09 77.0 6.6 52 203-269 25-76 (637)
235 PRK14532 adenylate kinase; Pro 97.5 8.8E-05 1.9E-09 67.2 3.5 29 246-274 3-31 (188)
236 TIGR00764 lon_rel lon-related 97.5 0.00022 4.7E-09 76.5 6.9 50 206-270 15-64 (608)
237 PF12775 AAA_7: P-loop contain 97.5 0.00013 2.8E-09 70.6 4.7 47 243-289 33-82 (272)
238 cd02021 GntK Gluconate kinase 97.5 9.2E-05 2E-09 64.5 3.3 30 246-275 2-31 (150)
239 PRK07261 topology modulation p 97.5 9E-05 2E-09 66.6 3.3 32 246-277 3-34 (171)
240 KOG1942 DNA helicase, TBP-inte 97.5 6.5E-05 1.4E-09 72.2 2.5 65 209-281 38-104 (456)
241 PRK13948 shikimate kinase; Pro 97.5 0.00011 2.4E-09 66.8 3.9 35 241-275 8-42 (182)
242 PRK06217 hypothetical protein; 97.5 9.6E-05 2.1E-09 66.9 3.5 31 245-275 3-33 (183)
243 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00022 4.8E-09 71.7 6.4 30 240-269 59-88 (362)
244 COG0703 AroK Shikimate kinase 97.4 8.4E-05 1.8E-09 66.6 2.8 33 244-276 3-35 (172)
245 COG1239 ChlI Mg-chelatase subu 97.4 0.00063 1.4E-08 68.6 9.2 51 205-268 13-63 (423)
246 PRK14531 adenylate kinase; Pro 97.4 0.00011 2.4E-09 66.6 3.5 31 244-274 3-33 (183)
247 cd02020 CMPK Cytidine monophos 97.4 0.0001 2.2E-09 63.5 3.2 30 246-275 2-31 (147)
248 PRK05022 anaerobic nitric oxid 97.4 0.00061 1.3E-08 71.7 9.6 63 207-280 185-250 (509)
249 KOG2035 Replication factor C, 97.4 0.00084 1.8E-08 64.3 9.3 122 200-334 4-176 (351)
250 TIGR01313 therm_gnt_kin carboh 97.4 0.00012 2.6E-09 64.8 3.5 30 246-275 1-30 (163)
251 cd01428 ADK Adenylate kinase ( 97.4 0.00012 2.6E-09 66.3 3.5 30 246-275 2-31 (194)
252 PF13401 AAA_22: AAA domain; P 97.4 0.00013 2.7E-09 61.7 3.3 43 244-286 5-55 (131)
253 PRK07132 DNA polymerase III su 97.4 0.0024 5.1E-08 62.6 12.6 92 242-340 17-143 (299)
254 COG0542 clpA ATP-binding subun 97.4 0.0011 2.4E-08 72.0 11.2 163 207-390 168-390 (786)
255 PRK10820 DNA-binding transcrip 97.4 0.00057 1.2E-08 72.0 8.8 66 204-280 199-267 (520)
256 PRK08154 anaerobic benzoate ca 97.4 0.0003 6.4E-09 69.3 6.0 58 213-275 108-165 (309)
257 PHA00729 NTP-binding motif con 97.4 9.7E-05 2.1E-09 69.2 2.3 29 245-273 19-47 (226)
258 PRK13946 shikimate kinase; Pro 97.3 0.00014 2.9E-09 66.1 3.2 34 243-276 10-43 (184)
259 PRK05057 aroK shikimate kinase 97.3 0.00018 3.8E-09 64.7 3.7 34 243-276 4-37 (172)
260 PRK03731 aroL shikimate kinase 97.3 0.00019 4.2E-09 63.9 3.6 32 245-276 4-35 (171)
261 PRK14530 adenylate kinase; Pro 97.3 0.00022 4.7E-09 66.3 3.6 30 245-274 5-34 (215)
262 PHA02774 E1; Provisional 97.3 0.00037 7.9E-09 73.2 5.5 37 239-275 430-467 (613)
263 KOG1051 Chaperone HSP104 and r 97.3 0.00068 1.5E-08 74.5 7.7 64 209-278 562-629 (898)
264 COG1936 Predicted nucleotide k 97.3 0.00018 3.8E-09 64.3 2.7 29 246-275 3-31 (180)
265 PF13086 AAA_11: AAA domain; P 97.2 0.00021 4.6E-09 65.8 3.1 22 246-267 20-41 (236)
266 PF00910 RNA_helicase: RNA hel 97.2 0.00019 4E-09 59.4 2.4 23 246-268 1-23 (107)
267 PRK07276 DNA polymerase III su 97.2 0.0042 9E-08 60.6 11.9 92 241-340 22-157 (290)
268 PRK14737 gmk guanylate kinase; 97.2 0.001 2.2E-08 60.7 7.2 25 243-267 4-28 (186)
269 PRK14528 adenylate kinase; Pro 97.2 0.00026 5.7E-09 64.4 3.4 30 245-274 3-32 (186)
270 PTZ00111 DNA replication licen 97.2 0.00082 1.8E-08 74.0 7.7 24 245-268 494-517 (915)
271 COG1102 Cmk Cytidylate kinase 97.2 0.00027 5.9E-09 62.5 3.2 28 246-273 3-30 (179)
272 PF13191 AAA_16: AAA ATPase do 97.2 0.00015 3.2E-09 64.8 1.6 37 243-279 24-63 (185)
273 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6E-09 63.5 3.4 30 245-274 5-34 (188)
274 PRK02496 adk adenylate kinase; 97.2 0.00026 5.6E-09 63.9 3.1 29 246-274 4-32 (184)
275 cd00227 CPT Chloramphenicol (C 97.2 0.00025 5.5E-09 63.6 2.8 33 244-276 3-35 (175)
276 PTZ00088 adenylate kinase 1; P 97.2 0.00031 6.7E-09 66.2 3.4 30 246-275 9-38 (229)
277 PRK06762 hypothetical protein; 97.2 0.00029 6.2E-09 62.5 3.0 32 244-275 3-34 (166)
278 PRK06547 hypothetical protein; 97.1 0.0004 8.6E-09 62.6 3.7 33 243-275 15-47 (172)
279 TIGR01351 adk adenylate kinase 97.1 0.00034 7.4E-09 64.7 3.3 29 246-274 2-30 (210)
280 PRK00279 adk adenylate kinase; 97.1 0.00037 8.1E-09 64.7 3.5 29 246-274 3-31 (215)
281 TIGR02237 recomb_radB DNA repa 97.1 0.00091 2E-08 61.5 5.9 50 239-289 8-60 (209)
282 PLN02200 adenylate kinase fami 97.1 0.00045 9.8E-09 65.3 3.9 32 243-274 43-74 (234)
283 PF13245 AAA_19: Part of AAA d 97.1 0.00062 1.4E-08 52.9 3.8 32 246-277 13-51 (76)
284 PRK14527 adenylate kinase; Pro 97.0 0.00043 9.3E-09 63.0 2.9 32 243-274 6-37 (191)
285 cd01120 RecA-like_NTPases RecA 97.0 0.00067 1.5E-08 58.7 3.8 32 246-277 2-36 (165)
286 PRK04182 cytidylate kinase; Pr 97.0 0.00054 1.2E-08 61.0 3.2 29 246-274 3-31 (180)
287 PF01745 IPT: Isopentenyl tran 97.0 0.00053 1.2E-08 63.4 3.1 35 245-279 3-37 (233)
288 PRK09862 putative ATP-dependen 97.0 0.00091 2E-08 69.9 5.3 47 207-268 189-235 (506)
289 PF00406 ADK: Adenylate kinase 97.0 0.00043 9.2E-09 60.5 2.4 27 248-274 1-27 (151)
290 PRK01184 hypothetical protein; 97.0 0.00056 1.2E-08 61.7 3.2 29 245-274 3-31 (184)
291 COG5245 DYN1 Dynein, heavy cha 96.9 0.0015 3.3E-08 74.0 6.7 50 240-289 1491-1541(3164)
292 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00064 1.4E-08 60.1 3.2 30 246-275 3-32 (171)
293 PRK04040 adenylate kinase; Pro 96.9 0.00067 1.4E-08 62.0 3.4 31 244-274 3-35 (188)
294 PTZ00202 tuzin; Provisional 96.9 0.0034 7.4E-08 64.2 8.6 76 205-292 258-333 (550)
295 PRK11361 acetoacetate metaboli 96.9 0.0031 6.6E-08 65.0 8.6 62 208-280 142-206 (457)
296 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0023 5E-08 63.5 7.2 65 208-279 59-125 (358)
297 smart00072 GuKc Guanylate kina 96.9 0.0023 5.1E-08 57.9 6.7 24 244-267 3-26 (184)
298 PLN02199 shikimate kinase 96.9 0.0015 3.3E-08 63.5 5.7 34 243-276 102-135 (303)
299 COG5271 MDN1 AAA ATPase contai 96.9 0.0027 6E-08 72.8 8.1 37 243-279 1543-1579(4600)
300 PHA02530 pseT polynucleotide k 96.9 0.00073 1.6E-08 65.8 3.4 31 244-274 3-34 (300)
301 PF13238 AAA_18: AAA domain; P 96.9 0.00049 1.1E-08 57.5 1.9 22 246-267 1-22 (129)
302 PF13521 AAA_28: AAA domain; P 96.9 0.00055 1.2E-08 60.6 2.2 26 246-272 2-27 (163)
303 PRK06696 uridine kinase; Valid 96.9 0.0025 5.4E-08 59.6 6.7 38 243-280 22-62 (223)
304 COG0563 Adk Adenylate kinase a 96.9 0.0008 1.7E-08 61.0 3.2 30 245-276 2-31 (178)
305 TIGR02915 PEP_resp_reg putativ 96.9 0.0056 1.2E-07 62.9 9.8 70 208-289 138-210 (445)
306 PF13173 AAA_14: AAA domain 96.9 0.00098 2.1E-08 56.7 3.5 37 244-280 3-41 (128)
307 PRK06851 hypothetical protein; 96.8 0.0057 1.2E-07 61.5 9.4 73 242-340 29-104 (367)
308 PRK14526 adenylate kinase; Pro 96.8 0.00086 1.9E-08 62.4 3.3 28 246-273 3-30 (211)
309 cd02019 NK Nucleoside/nucleoti 96.8 0.0011 2.3E-08 50.4 3.2 22 246-267 2-23 (69)
310 COG1855 ATPase (PilT family) [ 96.8 0.001 2.2E-08 67.5 3.8 92 160-269 182-289 (604)
311 PRK09361 radB DNA repair and r 96.8 0.0023 5E-08 59.6 6.0 50 239-289 19-71 (225)
312 KOG1514 Origin recognition com 96.8 0.022 4.7E-07 60.9 13.6 150 245-397 424-632 (767)
313 PRK06851 hypothetical protein; 96.8 0.007 1.5E-07 60.9 9.5 69 242-336 213-284 (367)
314 cd01394 radB RadB. The archaea 96.8 0.0021 4.6E-08 59.6 5.4 39 239-277 15-56 (218)
315 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0029 6.4E-08 59.1 5.9 51 239-289 15-74 (235)
316 cd02027 APSK Adenosine 5'-phos 96.7 0.0015 3.2E-08 57.3 3.5 30 246-275 2-34 (149)
317 PRK14722 flhF flagellar biosyn 96.7 0.0021 4.5E-08 64.8 4.9 25 243-267 137-161 (374)
318 TIGR03015 pepcterm_ATPase puta 96.7 0.0023 5E-08 61.0 5.1 24 245-268 45-68 (269)
319 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0014 3.1E-08 56.5 3.2 28 243-270 22-49 (133)
320 PLN02674 adenylate kinase 96.7 0.0014 3.1E-08 62.3 3.5 32 243-274 31-62 (244)
321 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0014 3.1E-08 62.2 3.5 31 246-276 2-35 (249)
322 PF00519 PPV_E1_C: Papillomavi 96.7 0.0025 5.4E-08 63.9 5.2 36 239-274 258-293 (432)
323 PRK08233 hypothetical protein; 96.7 0.0016 3.5E-08 58.1 3.7 32 246-277 6-38 (182)
324 TIGR01618 phage_P_loop phage n 96.7 0.00068 1.5E-08 63.5 1.2 23 243-265 12-34 (220)
325 cd01124 KaiC KaiC is a circadi 96.6 0.0018 3.9E-08 58.1 3.9 32 246-277 2-36 (187)
326 PRK10078 ribose 1,5-bisphospho 96.6 0.0014 3.1E-08 59.4 3.1 30 245-274 4-33 (186)
327 KOG3354 Gluconate kinase [Carb 96.6 0.0023 4.9E-08 56.3 4.1 51 241-293 10-60 (191)
328 PRK10923 glnG nitrogen regulat 96.6 0.0089 1.9E-07 61.9 9.3 70 208-289 137-209 (469)
329 PRK12339 2-phosphoglycerate ki 96.6 0.0019 4.1E-08 59.5 3.6 28 244-271 4-31 (197)
330 PRK14021 bifunctional shikimat 96.6 0.0018 3.8E-08 68.7 3.8 31 246-276 9-39 (542)
331 PRK14529 adenylate kinase; Pro 96.6 0.0014 3.1E-08 61.5 2.6 28 246-273 3-30 (223)
332 PF00437 T2SE: Type II/IV secr 96.5 0.0018 4E-08 62.1 3.4 56 204-270 99-154 (270)
333 PF06745 KaiC: KaiC; InterPro 96.5 0.0018 4E-08 60.4 3.3 40 239-278 15-58 (226)
334 TIGR02236 recomb_radA DNA repa 96.5 0.0044 9.5E-08 60.9 6.1 52 239-290 91-151 (310)
335 PRK06067 flagellar accessory p 96.5 0.0028 6.1E-08 59.5 4.5 39 239-277 21-62 (234)
336 cd02022 DPCK Dephospho-coenzym 96.5 0.0021 4.6E-08 57.9 3.4 29 246-275 2-30 (179)
337 PF05729 NACHT: NACHT domain 96.5 0.0017 3.7E-08 56.5 2.6 24 244-267 1-24 (166)
338 PLN02459 probable adenylate ki 96.5 0.0025 5.4E-08 61.1 3.9 30 245-274 31-60 (261)
339 COG2204 AtoC Response regulato 96.5 0.013 2.7E-07 60.6 9.2 63 207-280 139-204 (464)
340 PF05621 TniB: Bacterial TniB 96.5 0.012 2.6E-07 57.4 8.6 54 220-279 44-106 (302)
341 COG3604 FhlA Transcriptional r 96.5 0.0092 2E-07 61.5 8.0 64 206-280 220-286 (550)
342 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.0027 5.9E-08 60.9 4.1 39 239-277 32-73 (259)
343 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.003 6.5E-08 59.6 4.3 40 239-278 17-59 (237)
344 PF13604 AAA_30: AAA domain; P 96.5 0.0052 1.1E-07 56.4 5.7 35 244-278 19-56 (196)
345 PF05272 VirE: Virulence-assoc 96.4 0.0033 7.2E-08 57.9 4.2 28 239-266 48-75 (198)
346 cd01393 recA_like RecA is a b 96.4 0.0054 1.2E-07 57.0 5.7 52 239-290 15-75 (226)
347 PRK05800 cobU adenosylcobinami 96.4 0.0038 8.3E-08 56.1 4.5 35 246-280 4-38 (170)
348 COG0467 RAD55 RecA-superfamily 96.4 0.0033 7.2E-08 60.1 4.3 49 239-289 19-70 (260)
349 PRK00771 signal recognition pa 96.4 0.0057 1.2E-07 63.0 6.2 62 216-278 69-133 (437)
350 PRK05973 replicative DNA helic 96.4 0.0033 7.2E-08 59.5 4.1 40 239-278 60-102 (237)
351 PRK05541 adenylylsulfate kinas 96.4 0.0026 5.6E-08 57.0 3.2 26 243-268 7-32 (176)
352 KOG0478 DNA replication licens 96.4 0.0036 7.9E-08 66.3 4.6 58 210-269 430-488 (804)
353 PRK13808 adenylate kinase; Pro 96.4 0.0024 5.3E-08 63.3 3.2 29 246-274 3-31 (333)
354 PRK13764 ATPase; Provisional 96.4 0.003 6.5E-08 67.3 4.0 26 243-268 257-282 (602)
355 PRK09825 idnK D-gluconate kina 96.4 0.0051 1.1E-07 55.5 5.0 42 245-288 5-46 (176)
356 PRK04301 radA DNA repair and r 96.4 0.0062 1.4E-07 60.1 6.0 52 239-290 98-158 (317)
357 PRK00889 adenylylsulfate kinas 96.4 0.0036 7.7E-08 56.0 3.9 33 244-276 5-40 (175)
358 TIGR02782 TrbB_P P-type conjug 96.3 0.0036 7.8E-08 61.4 4.1 25 243-267 132-156 (299)
359 TIGR02322 phosphon_PhnN phosph 96.3 0.0025 5.4E-08 57.1 2.7 25 245-269 3-27 (179)
360 PLN02165 adenylate isopentenyl 96.3 0.0028 6E-08 62.8 3.2 35 244-278 44-78 (334)
361 PRK12338 hypothetical protein; 96.3 0.003 6.4E-08 62.3 3.4 30 243-272 4-33 (319)
362 PRK15115 response regulator Gl 96.3 0.016 3.5E-07 59.5 8.8 37 244-280 158-197 (444)
363 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0035 7.5E-08 57.5 3.4 40 241-280 13-53 (199)
364 TIGR00064 ftsY signal recognit 96.3 0.0096 2.1E-07 57.6 6.5 60 217-277 46-109 (272)
365 PRK11545 gntK gluconate kinase 96.3 0.003 6.6E-08 56.2 2.8 27 249-275 1-27 (163)
366 PRK14730 coaE dephospho-CoA ki 96.2 0.0035 7.5E-08 57.6 3.2 30 246-275 4-33 (195)
367 PF03266 NTPase_1: NTPase; In 96.2 0.0029 6.2E-08 56.8 2.6 22 246-267 2-23 (168)
368 PRK00091 miaA tRNA delta(2)-is 96.2 0.0038 8.2E-08 61.4 3.6 36 244-279 5-40 (307)
369 TIGR00368 Mg chelatase-related 96.2 0.0032 6.9E-08 66.0 3.2 47 206-267 189-235 (499)
370 TIGR03499 FlhF flagellar biosy 96.2 0.0091 2E-07 58.0 6.1 36 243-278 194-234 (282)
371 cd00984 DnaB_C DnaB helicase C 96.2 0.0051 1.1E-07 57.8 4.2 40 239-278 9-52 (242)
372 cd02024 NRK1 Nicotinamide ribo 96.2 0.0039 8.5E-08 56.9 3.2 30 246-275 2-32 (187)
373 PRK10416 signal recognition pa 96.2 0.0061 1.3E-07 60.3 4.8 59 216-275 87-149 (318)
374 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.0094 2E-07 55.5 5.8 40 239-278 12-54 (224)
375 TIGR02655 circ_KaiC circadian 96.2 0.0082 1.8E-07 62.8 5.9 39 239-277 17-59 (484)
376 TIGR00376 DNA helicase, putati 96.2 0.0094 2E-07 64.4 6.4 34 245-278 175-211 (637)
377 TIGR02012 tigrfam_recA protein 96.1 0.006 1.3E-07 60.3 4.4 39 239-277 51-92 (321)
378 cd01130 VirB11-like_ATPase Typ 96.1 0.0041 8.9E-08 56.5 3.1 26 243-268 25-50 (186)
379 PRK08533 flagellar accessory p 96.1 0.0064 1.4E-07 57.3 4.5 38 239-276 20-60 (230)
380 PRK12337 2-phosphoglycerate ki 96.1 0.01 2.2E-07 61.2 6.1 34 242-275 254-288 (475)
381 COG4088 Predicted nucleotide k 96.1 0.0034 7.3E-08 57.8 2.4 24 246-269 4-27 (261)
382 KOG2680 DNA helicase TIP49, TB 96.1 0.0062 1.3E-07 59.1 4.2 53 239-291 62-121 (454)
383 TIGR03263 guanyl_kin guanylate 96.1 0.0035 7.5E-08 56.1 2.4 26 245-270 3-28 (180)
384 PRK08356 hypothetical protein; 96.1 0.0049 1.1E-07 56.3 3.4 28 245-273 7-34 (195)
385 PRK00081 coaE dephospho-CoA ki 96.1 0.0053 1.1E-07 56.2 3.5 30 245-275 4-33 (194)
386 cd03115 SRP The signal recogni 96.1 0.0061 1.3E-07 54.3 3.8 34 246-279 3-39 (173)
387 cd01129 PulE-GspE PulE/GspE Th 96.1 0.0081 1.8E-07 57.8 4.9 48 206-268 57-105 (264)
388 PRK00300 gmk guanylate kinase; 96.0 0.0048 1E-07 56.4 3.1 26 243-268 5-30 (205)
389 PRK06761 hypothetical protein; 96.0 0.0054 1.2E-07 59.6 3.5 31 245-275 5-35 (282)
390 PRK04328 hypothetical protein; 96.0 0.0075 1.6E-07 57.5 4.4 40 239-278 19-61 (249)
391 cd02028 UMPK_like Uridine mono 96.0 0.0057 1.2E-07 55.3 3.4 34 246-279 2-38 (179)
392 TIGR00017 cmk cytidylate kinas 96.0 0.0053 1.1E-07 57.4 3.3 29 246-274 5-33 (217)
393 PRK13951 bifunctional shikimat 96.0 0.0051 1.1E-07 64.4 3.5 31 246-276 3-33 (488)
394 PRK12723 flagellar biosynthesi 96.0 0.013 2.8E-07 59.5 6.3 26 242-267 173-198 (388)
395 TIGR00174 miaA tRNA isopenteny 96.0 0.0057 1.2E-07 59.5 3.6 34 246-279 2-35 (287)
396 PRK05480 uridine/cytidine kina 96.0 0.007 1.5E-07 55.7 4.0 25 244-268 7-31 (209)
397 COG3265 GntK Gluconate kinase 96.0 0.022 4.9E-07 49.8 6.8 42 250-293 2-43 (161)
398 PF06431 Polyoma_lg_T_C: Polyo 96.0 0.0061 1.3E-07 60.6 3.6 53 217-277 137-189 (417)
399 TIGR01425 SRP54_euk signal rec 96.0 0.012 2.6E-07 60.3 6.0 34 243-276 100-136 (429)
400 TIGR00152 dephospho-CoA kinase 96.0 0.0058 1.3E-07 55.4 3.3 30 246-275 2-31 (188)
401 cd00983 recA RecA is a bacter 96.0 0.0083 1.8E-07 59.4 4.6 39 239-277 51-92 (325)
402 TIGR02238 recomb_DMC1 meiotic 96.0 0.013 2.7E-07 57.9 5.9 52 239-290 92-152 (313)
403 PRK10867 signal recognition pa 96.0 0.012 2.6E-07 60.5 5.9 61 217-278 74-139 (433)
404 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.0053 1.2E-07 57.3 3.1 38 239-276 16-56 (229)
405 TIGR01613 primase_Cterm phage/ 96.0 0.021 4.7E-07 55.9 7.4 56 209-271 48-104 (304)
406 PRK00023 cmk cytidylate kinase 95.9 0.0047 1E-07 58.0 2.6 33 244-276 5-37 (225)
407 PRK13833 conjugal transfer pro 95.9 0.0054 1.2E-07 60.7 3.1 25 243-267 144-168 (323)
408 PF01583 APS_kinase: Adenylyls 95.9 0.0055 1.2E-07 54.3 2.8 35 245-279 4-41 (156)
409 PRK04220 2-phosphoglycerate ki 95.9 0.0069 1.5E-07 59.2 3.7 28 243-270 92-119 (301)
410 PF00448 SRP54: SRP54-type pro 95.9 0.0039 8.6E-08 57.3 1.9 25 243-267 1-25 (196)
411 PRK09518 bifunctional cytidyla 95.9 0.0055 1.2E-07 67.1 3.3 30 246-275 4-33 (712)
412 PRK04132 replication factor C 95.9 0.005 1.1E-07 68.0 2.9 50 193-259 7-56 (846)
413 cd02023 UMPK Uridine monophosp 95.9 0.0084 1.8E-07 54.7 3.9 22 246-267 2-23 (198)
414 cd00544 CobU Adenosylcobinamid 95.9 0.015 3.3E-07 52.2 5.5 34 246-279 2-35 (169)
415 PLN03187 meiotic recombination 95.9 0.013 2.8E-07 58.6 5.5 52 239-290 122-182 (344)
416 PF13555 AAA_29: P-loop contai 95.9 0.0065 1.4E-07 45.3 2.5 23 245-267 25-47 (62)
417 PF01202 SKI: Shikimate kinase 95.8 0.0047 1E-07 54.5 2.1 25 252-276 1-25 (158)
418 COG1485 Predicted ATPase [Gene 95.8 0.013 2.9E-07 57.9 5.3 30 240-269 62-91 (367)
419 PF00485 PRK: Phosphoribulokin 95.8 0.0047 1E-07 56.4 2.0 23 246-268 2-24 (194)
420 COG3283 TyrR Transcriptional r 95.8 0.045 9.8E-07 54.4 8.8 83 200-293 195-280 (511)
421 PF13479 AAA_24: AAA domain 95.8 0.005 1.1E-07 57.2 2.2 19 245-263 5-23 (213)
422 PRK10646 ADP-binding protein; 95.8 0.032 6.9E-07 49.3 7.1 26 244-269 29-54 (153)
423 PRK13894 conjugal transfer ATP 95.8 0.0067 1.5E-07 60.0 3.1 25 243-267 148-172 (319)
424 PRK13406 bchD magnesium chelat 95.8 0.012 2.7E-07 62.7 5.3 97 244-342 26-164 (584)
425 PRK11823 DNA repair protein Ra 95.8 0.0093 2E-07 61.8 4.2 40 239-278 76-118 (446)
426 PRK13975 thymidylate kinase; P 95.8 0.0062 1.3E-07 55.3 2.6 27 245-271 4-30 (196)
427 cd00071 GMPK Guanosine monopho 95.8 0.0075 1.6E-07 52.1 3.0 25 246-270 2-26 (137)
428 cd01131 PilT Pilus retraction 95.8 0.006 1.3E-07 56.1 2.5 23 246-268 4-26 (198)
429 TIGR00235 udk uridine kinase. 95.7 0.0068 1.5E-07 55.9 2.7 23 246-268 9-31 (207)
430 PRK14974 cell division protein 95.7 0.015 3.2E-07 58.0 5.2 34 243-276 140-176 (336)
431 cd01672 TMPK Thymidine monopho 95.7 0.017 3.6E-07 52.0 5.2 45 246-290 3-51 (200)
432 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.011 2.3E-07 59.6 4.3 24 244-267 135-158 (358)
433 PLN02840 tRNA dimethylallyltra 95.7 0.0093 2E-07 60.9 3.8 33 245-277 23-55 (421)
434 COG0283 Cmk Cytidylate kinase 95.7 0.0069 1.5E-07 56.1 2.6 29 246-274 7-35 (222)
435 cd01122 GP4d_helicase GP4d_hel 95.7 0.01 2.3E-07 56.7 3.8 40 239-278 26-69 (271)
436 TIGR02688 conserved hypothetic 95.7 0.016 3.5E-07 59.1 5.2 24 243-266 209-232 (449)
437 PRK14733 coaE dephospho-CoA ki 95.7 0.01 2.2E-07 55.0 3.5 31 245-275 8-38 (204)
438 PF03029 ATP_bind_1: Conserved 95.6 0.0076 1.6E-07 57.1 2.7 28 248-275 1-31 (238)
439 PRK14738 gmk guanylate kinase; 95.6 0.0074 1.6E-07 55.8 2.5 24 243-266 13-36 (206)
440 PF02367 UPF0079: Uncharacteri 95.6 0.0072 1.6E-07 51.4 2.2 28 243-270 15-42 (123)
441 COG0324 MiaA tRNA delta(2)-iso 95.6 0.01 2.3E-07 58.1 3.7 37 243-279 3-39 (308)
442 PF04851 ResIII: Type III rest 95.6 0.023 5E-07 50.1 5.6 35 243-277 25-59 (184)
443 PRK10536 hypothetical protein; 95.6 0.014 2.9E-07 55.9 4.3 35 245-279 76-114 (262)
444 PRK13900 type IV secretion sys 95.6 0.014 3.1E-07 58.0 4.6 27 243-269 160-186 (332)
445 PRK08099 bifunctional DNA-bind 95.6 0.0098 2.1E-07 60.7 3.5 30 243-272 219-248 (399)
446 PRK11889 flhF flagellar biosyn 95.6 0.016 3.5E-07 58.8 4.9 49 215-267 217-265 (436)
447 KOG2170 ATPase of the AAA+ sup 95.6 0.019 4E-07 55.8 5.0 50 210-267 83-134 (344)
448 TIGR01526 nadR_NMN_Atrans nico 95.5 0.01 2.2E-07 58.9 3.3 31 244-274 163-193 (325)
449 cd00046 DEXDc DEAD-like helica 95.5 0.009 2E-07 49.4 2.5 25 244-268 1-25 (144)
450 COG0529 CysC Adenylylsulfate k 95.5 0.017 3.6E-07 52.1 4.2 36 244-279 24-62 (197)
451 PTZ00035 Rad51 protein; Provis 95.5 0.023 5.1E-07 56.6 5.8 52 239-290 114-174 (337)
452 TIGR01818 ntrC nitrogen regula 95.5 0.074 1.6E-06 54.9 9.7 69 209-289 134-205 (463)
453 TIGR02239 recomb_RAD51 DNA rep 95.5 0.023 4.9E-07 56.2 5.6 51 239-289 92-151 (316)
454 PF08477 Miro: Miro-like prote 95.5 0.0092 2E-07 49.2 2.3 23 246-268 2-24 (119)
455 PRK03846 adenylylsulfate kinas 95.5 0.014 3E-07 53.5 3.7 35 243-277 24-61 (198)
456 TIGR00959 ffh signal recogniti 95.4 0.026 5.7E-07 58.0 6.0 61 217-277 73-137 (428)
457 COG2805 PilT Tfp pilus assembl 95.4 0.02 4.3E-07 55.7 4.7 48 203-269 103-151 (353)
458 cd01918 HprK_C HprK/P, the bif 95.4 0.0098 2.1E-07 52.3 2.4 24 243-266 14-37 (149)
459 PRK12724 flagellar biosynthesi 95.4 0.033 7.2E-07 56.9 6.5 25 243-267 223-247 (432)
460 PF12780 AAA_8: P-loop contain 95.4 0.031 6.7E-07 54.0 6.0 71 210-291 9-83 (268)
461 cd01673 dNK Deoxyribonucleosid 95.4 0.011 2.4E-07 53.5 2.7 27 246-272 2-28 (193)
462 PRK09354 recA recombinase A; P 95.4 0.02 4.2E-07 57.3 4.6 40 239-278 56-98 (349)
463 TIGR00455 apsK adenylylsulfate 95.4 0.014 3.1E-07 52.6 3.3 33 244-276 19-54 (184)
464 COG2804 PulE Type II secretory 95.4 0.022 4.7E-07 59.0 5.0 51 205-270 234-285 (500)
465 PF01637 Arch_ATPase: Archaeal 95.3 0.0098 2.1E-07 54.6 2.3 26 243-268 20-45 (234)
466 TIGR02533 type_II_gspE general 95.3 0.022 4.7E-07 59.6 5.1 49 205-268 218-267 (486)
467 PLN03186 DNA repair protein RA 95.3 0.029 6.2E-07 56.1 5.7 52 239-290 119-179 (342)
468 TIGR02525 plasmid_TraJ plasmid 95.3 0.023 5.1E-07 57.3 5.1 23 245-267 151-173 (372)
469 PRK07667 uridine kinase; Provi 95.3 0.016 3.5E-07 52.9 3.5 34 245-278 19-55 (193)
470 PRK13477 bifunctional pantoate 95.3 0.013 2.9E-07 61.4 3.2 28 246-273 287-314 (512)
471 cd00820 PEPCK_HprK Phosphoenol 95.2 0.011 2.4E-07 49.1 1.9 22 243-264 15-36 (107)
472 PRK14731 coaE dephospho-CoA ki 95.2 0.016 3.6E-07 53.6 3.4 29 246-275 8-36 (208)
473 PF07931 CPT: Chloramphenicol 95.2 0.016 3.6E-07 52.2 3.2 34 245-278 3-36 (174)
474 PF00931 NB-ARC: NB-ARC domain 95.2 0.019 4E-07 55.1 3.7 24 243-266 19-42 (287)
475 COG1618 Predicted nucleotide k 95.2 0.012 2.6E-07 52.3 2.1 25 244-268 6-30 (179)
476 PLN03210 Resistant to P. syrin 95.2 0.019 4.1E-07 66.3 4.4 56 203-269 178-233 (1153)
477 PLN02748 tRNA dimethylallyltra 95.2 0.016 3.5E-07 60.1 3.4 35 245-279 24-58 (468)
478 cd02025 PanK Pantothenate kina 95.1 0.021 4.5E-07 53.5 3.8 34 246-279 2-40 (220)
479 TIGR02655 circ_KaiC circadian 95.1 0.021 4.5E-07 59.8 4.3 39 239-277 259-300 (484)
480 KOG0480 DNA replication licens 95.1 0.082 1.8E-06 56.0 8.4 64 208-274 344-409 (764)
481 PRK05703 flhF flagellar biosyn 95.1 0.027 5.8E-07 58.0 4.9 35 243-277 221-260 (424)
482 PRK09376 rho transcription ter 95.1 0.014 3.1E-07 59.0 2.7 24 246-269 172-195 (416)
483 TIGR01663 PNK-3'Pase polynucle 95.1 0.015 3.2E-07 61.3 3.0 33 243-275 369-401 (526)
484 cd01121 Sms Sms (bacterial rad 95.1 0.023 4.9E-07 57.5 4.1 39 239-277 78-119 (372)
485 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.025 5.5E-07 44.1 3.5 30 246-275 2-34 (99)
486 PF01926 MMR_HSR1: 50S ribosom 95.0 0.012 2.6E-07 48.7 1.7 21 246-266 2-22 (116)
487 COG4650 RtcR Sigma54-dependent 95.0 0.043 9.3E-07 53.2 5.6 50 242-291 207-262 (531)
488 PRK13851 type IV secretion sys 95.0 0.014 3E-07 58.4 2.4 28 242-269 161-188 (344)
489 PTZ00301 uridine kinase; Provi 95.0 0.014 3.1E-07 54.2 2.4 22 246-267 6-27 (210)
490 PF00005 ABC_tran: ABC transpo 95.0 0.0093 2E-07 50.7 1.0 28 242-269 10-37 (137)
491 PRK10436 hypothetical protein; 95.0 0.031 6.7E-07 58.1 5.0 48 206-268 195-243 (462)
492 PF00625 Guanylate_kin: Guanyl 95.0 0.025 5.5E-07 51.0 3.9 29 243-271 2-30 (183)
493 PRK09302 circadian clock prote 95.0 0.023 5.1E-07 59.7 4.2 39 239-277 27-69 (509)
494 KOG2227 Pre-initiation complex 94.9 0.22 4.7E-06 51.2 10.6 118 208-334 149-308 (529)
495 COG2874 FlaH Predicted ATPases 94.9 0.034 7.3E-07 51.6 4.5 38 230-267 13-52 (235)
496 TIGR00041 DTMP_kinase thymidyl 94.9 0.019 4.2E-07 52.0 2.9 29 246-274 6-37 (195)
497 COG4619 ABC-type uncharacteriz 94.9 0.016 3.5E-07 52.0 2.2 24 245-268 31-54 (223)
498 TIGR02538 type_IV_pilB type IV 94.9 0.033 7.2E-07 59.4 5.1 48 206-268 293-341 (564)
499 PRK14734 coaE dephospho-CoA ki 94.9 0.023 5.1E-07 52.3 3.4 29 246-275 4-32 (200)
500 PRK05439 pantothenate kinase; 94.9 0.037 8.1E-07 54.5 4.9 36 244-279 87-127 (311)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-91 Score=688.18 Aligned_cols=380 Identities=47% Similarity=0.754 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhHHHhhcccCCceEEEEcccCCccchhHHHHHHHHhccCCCccccc
Q 048683 6 AVLSIAASLAASAMLIGSIANDFLPTEVQDYWYSSLHFVSQYLSSRITIVIKEFLGLIINQVFEATHLYLGDRTTTSSAK 85 (398)
Q Consensus 6 ~~~~~~~s~~a~~ml~~~~~~~~~P~~l~~~i~~~~~~l~~~~~~~~t~~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~~ 85 (398)
++|+.+||++|++||+|+|+++++|.+++.|+.+++.+|++.+++|.++.|.|++|+.+||+|.|+|.||++++++.+ .
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~-~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIA-K 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhh-h
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ceeeeccCCCCceEEecCCCCeEEEeecCeeeEEEEEEeecCCCccccCCCcccccccccCccceEEEEEcCcchhHHHH
Q 048683 86 RLRVGKSEKEKTFRTTLDRNEEMVDVFEDVTLKWKLICTQVPLSVEYINPDLEDHNASLRSEVRHYELSFHKKHTDTVLN 165 (398)
Q Consensus 86 rl~~~~~~~~~~~~~~~~~~~~v~D~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~ 165 (398)
||+.+.+.+++++++.+++|++|.|+|+||+++|.+++...+ ..... + . ..+.|+|+|+|+++||+.|+.
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~--~~~~~-~----~---~~~~r~~~L~f~k~~~e~V~~ 150 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNE--KWIFV-E----R---EREKRYFELTFHKKPRELVTL 150 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecC--ccccc-c----c---CCcceEEEEEecCccHHHhHH
Confidence 999999999999999999999999999999999999998766 33221 1 1 468899999999999999999
Q ss_pred HHHHHHHHHhHHHHhcCceEEEEecC---------CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHh
Q 048683 166 LYLPHVLKKAKAVKEDCNTVKLHTVL---------RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYR 236 (398)
Q Consensus 166 ~yl~~v~~~~~~~~~~~~~~~~~~~~---------~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~ 236 (398)
+||+++.+++++|+.+++.+++|+++ +..|.+ +.++||++|++|+|++++|++|++|+..|++++++|+
T Consensus 151 syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~--v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Yk 228 (457)
T KOG0743|consen 151 SYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRS--VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYK 228 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCccee--cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999986 568999 9999999999999999999999999999999999999
Q ss_pred hhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc---------------------
Q 048683 237 RVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR--------------------- 295 (398)
Q Consensus 237 ~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~--------------------- 295 (398)
++|++|+||||||||||||||+++.|||+++++++|+++++++..+++|++++..++++
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~ 308 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKK 308 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999887665
Q ss_pred ----------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh--------------HhhhhcCCCC-
Q 048683 296 ----------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ--------------RAFNYLGISH- 350 (398)
Q Consensus 296 ----------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~--------------l~~~~l~~~~- 350 (398)
+++|||||++||+||+|++++|||+||||+++|||||+||||||+ ++.||+++++
T Consensus 309 ~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~ 388 (457)
T KOG0743|consen 309 KENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED 388 (457)
T ss_pred cccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 689999999999999999999999999999999999999999999 8899999985
Q ss_pred hHHHHHH--HhhhcCCCHHHHHHHHHccc-cHHHHHHHHHHHHHHHHhhcC
Q 048683 351 HHLYEQM--LIMEMNGTPAEAAGELANSA-EAQVSLQGLIKFLHVKLQATN 398 (398)
Q Consensus 351 ~~~~~~i--l~~~~~~tpa~i~~~l~~~~-d~~~al~~l~~~l~~~~~~~n 398 (398)
|+++++| +..+..+|||+|+|.||++. |++.|+++|+++|++++++.|
T Consensus 389 h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~ 439 (457)
T KOG0743|consen 389 HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRN 439 (457)
T ss_pred cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhc
Confidence 9999999 88999999999999999887 899999999999999987643
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=282.61 Aligned_cols=170 Identities=25% Similarity=0.330 Sum_probs=146.3
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+.-.+..||++|+|.++++++|++.++.++.+|+.|.++|+.+|+|+|||||||||||+||+|+|++.++.|+.+..|++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c-----ChHH-HHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q-----FSSD-LQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~-----~~~~-L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ..+. ++++|.-+..+ +|+-+||++|||+.+ .+++=||++||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR 299 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNR 299 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCC
Confidence 2 3344 45555433222 788899999999998 578999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHHHh-------------------hhcCCCHHHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI-------------------MEMNGTPAEAAGEL 373 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~-------------------~~~~~tpa~i~~~l 373 (398)
+|.|||||+||||||+.+ .+++|+.+-+.+|+. ....+|.|++.+.+
T Consensus 300 ~D~LDPALLRPGR~DRkI--EfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 300 PDILDPALLRPGRFDRKI--EFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred ccccChhhcCCCccccee--ecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHH
Confidence 999999999999999988 899999998888811 12357788887776
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-33 Score=284.27 Aligned_cols=151 Identities=25% Similarity=0.392 Sum_probs=139.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
.+..+|+||+|.+++|++|.+.+.+++++++.|.++|+.+++|+|||||||||||++|+|+|++++.+|+.+...++.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999988773
Q ss_pred ----ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 281 ----FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
++..++++|..+... +++++||++|||+.. ..+++||++||+|+.||+
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~ID~ 585 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMIDP 585 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--cCcEEEEeccCChhhcCH
Confidence 577888888765332 789999999999987 478999999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||+||||||+++ |+++|+.+.+.+|
T Consensus 586 ALlRPGRlD~ii--yVplPD~~aR~~I 610 (693)
T KOG0730|consen 586 ALLRPGRLDRII--YVPLPDLEARLEI 610 (693)
T ss_pred HHcCCcccceeE--eecCccHHHHHHH
Confidence 999999999999 9999999999988
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=271.84 Aligned_cols=152 Identities=22% Similarity=0.353 Sum_probs=140.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
.-+..+|+||++.++++.++...+.+++++++.|+.+|+..|.|+||+||||||||.||+|+|+|.+.+|+.+...++.
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
++..++++|..+... +.+++||.+|||+.. ..+|.||++||+||.||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccc
Confidence 567789999876543 889999999999976 57899999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||+|||||||+++ |+++|+.+.+.+|
T Consensus 662 pAiLRPGRlDk~L--yV~lPn~~eR~~I 687 (802)
T KOG0733|consen 662 PAILRPGRLDKLL--YVGLPNAEERVAI 687 (802)
T ss_pred hhhcCCCccCcee--eecCCCHHHHHHH
Confidence 9999999999988 9999998888888
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=269.21 Aligned_cols=181 Identities=24% Similarity=0.329 Sum_probs=158.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc----
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ---- 280 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~---- 280 (398)
..+|.+|+|.+.+-.++++.+.. +++|+.|..+|+.++||+|||||||||||+||+|+|++++.||+.+++.++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 45899999999999999988875 9999999999999999999999999999999999999999999999998873
Q ss_pred --ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCccc--CCCCeEEEEecCCCCCCCh
Q 048683 281 --FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSW--CGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 281 --~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~--~~~~vivI~TTN~~~~LDp 330 (398)
++..++++|.++.+. +++++||+.||++... .++.|+||+|||+||.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 678899999876543 8899999999998653 3578999999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH---------------HhhhcCCCHHHHHHHHH--ccccHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM---------------LIMEMNGTPAEAAGELA--NSAEAQVSLQGLIK 388 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i---------------l~~~~~~tpa~i~~~l~--~~~d~~~al~~l~~ 388 (398)
||.|+||||+-| -+++|+...+.+| +...+..||..|++.|+ +...+..|++++..
T Consensus 345 aLRRaGRFdrEI--~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 345 ALRRAGRFDREI--CLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred HHhcccccccee--eecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999977 8999999999988 12345688888888886 35667777776543
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-31 Score=271.11 Aligned_cols=147 Identities=27% Similarity=0.427 Sum_probs=133.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc--
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI-- 279 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~-- 279 (398)
.-+..+|+||+|.+++|++|.+.+..++++++.+.. |...+.|+|||||||||||.+|+|+|.++...|..+...++
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 345568999999999999999999999999999874 77788999999999999999999999999999999998886
Q ss_pred ----cChHHHHHHHHcCccc----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 280 ----QFSSDLQFLLLTMPSR----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 280 ----~~~~~L~~l~~~~~~~----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
+++.+++++|..+.+. +++|+||.+|||+.......++||++||+||.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 3789999999876543 88999999999998655788999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCCh
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHH 351 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~ 351 (398)
|||||+||||||+++ |+|+++.
T Consensus 824 LDpALLRPGRFDKLv--yvG~~~d 845 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLV--YVGPNED 845 (953)
T ss_pred cChhhcCCCccceeE--EecCCcc
Confidence 999999999999998 9999854
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-30 Score=269.61 Aligned_cols=151 Identities=30% Similarity=0.442 Sum_probs=136.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
...+.+|+|++|.++.|++|.+.+. |+++|+.|.++|...|||+||+||||||||+||+|+|.|.|.||+.++.+++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 4455899999999999999988876 99999999999999999999999999999999999999999999999999873
Q ss_pred -----ChHHHHHHHHcCccc------------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCC
Q 048683 281 -----FSSDLQFLLLTMPSR------------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK 325 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~------------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~ 325 (398)
..+.++.+|..+... .++++||.+|||+.+ ..++||+++||++
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRP 460 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCc
Confidence 467788888654332 688999999999987 4789999999999
Q ss_pred CCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 326 EKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 326 ~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+.|||||+||||||+.+ ++++|+..-+.+|
T Consensus 461 d~ld~allrpGRfdr~i--~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQI--QIDLPDVKGRASI 490 (774)
T ss_pred cccCHHhcCCCccccce--eccCCchhhhHHH
Confidence 99999999999999977 8999988888777
No 8
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-30 Score=256.19 Aligned_cols=148 Identities=29% Similarity=0.410 Sum_probs=134.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc----
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ---- 280 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~---- 280 (398)
..+|+|+.|.++.|+++.+.++ |+++|+.|.++|-..|+|+||.||||||||+||+|+|.|.+.||+..+.+++.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 4589999999999999977765 99999999999999999999999999999999999999999999999998873
Q ss_pred --ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhc
Q 048683 281 --FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPAL 332 (398)
Q Consensus 281 --~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAl 332 (398)
...+++.+|..+..+ .++++||.+|||+.. ++++|||++||.|+.||+||
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHh
Confidence 578899999876544 789999999999988 58999999999999999999
Q ss_pred cCCCchhhHhhhhcCCCChHHHHHH
Q 048683 333 LRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 333 lRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+||||||+.+ -++.||-.-|.+|
T Consensus 457 ~RPGRFD~~v--~Vp~PDv~GR~eI 479 (752)
T KOG0734|consen 457 TRPGRFDRHV--TVPLPDVRGRTEI 479 (752)
T ss_pred cCCCccceeE--ecCCCCcccHHHH
Confidence 9999999966 6788887777777
No 9
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.96 E-value=3e-29 Score=205.02 Aligned_cols=97 Identities=39% Similarity=0.665 Sum_probs=93.6
Q ss_pred hCCHHHHHHHHHhHHHhhc-ccCCceEEEEcccCCccchhHHHHHHHHhccCCCcccccceeeeccCCCCceEEecCCCC
Q 048683 28 FLPTEVQDYWYSSLHFVSQ-YLSSRITIVIKEFLGLIINQVFEATHLYLGDRTTTSSAKRLRVGKSEKEKTFRTTLDRNE 106 (398)
Q Consensus 28 ~~P~~l~~~i~~~~~~l~~-~~~~~~t~~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 106 (398)
|||++||+++.++++++++ +++||+||+|+|++|+.+|++|+||++||++++++++ +|||+++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceEEecCCCC
Confidence 6899999999999988776 8999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eEEEeecCeeeEEEEEEee
Q 048683 107 EMVDVFEDVTLKWKLICTQ 125 (398)
Q Consensus 107 ~v~D~f~g~~~~w~~~~~~ 125 (398)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998864
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.1e-29 Score=228.76 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=126.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
.+..++.|++|.+-+|+++++.++.++.+.+.|++.|+.+|||+|||||||||||+|++|+|++....|+.+..+++.
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred ----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 281 ----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
...-++..|.-+... +++-.||++|||+.. ..++-||++||+.+.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnradt 306 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRADT 306 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcccc
Confidence 233344454332211 677789999999988 467899999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHL 353 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~ 353 (398)
|||||+||||+|+.+ .+++|+..-
T Consensus 307 ldpallrpgrldrki--efplpdrrq 330 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKI--EFPLPDRRQ 330 (408)
T ss_pred cCHhhcCCccccccc--cCCCCchhh
Confidence 999999999999977 788887654
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-29 Score=235.47 Aligned_cols=154 Identities=26% Similarity=0.370 Sum_probs=132.6
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+..-+.-+|+|++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||...+.|+.+-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 33444568999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c-----ChHH-HHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q-----FSSD-LQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~-----~~~~-L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. .... ++++|.-+... +++-.|||++||+.+ ...+=||++||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnr 333 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNR 333 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEeccc
Confidence 2 3344 44555432111 667789999999998 578999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++.|||||+||||+|+-| .++.|+......|
T Consensus 334 ie~LDPaLiRPGrIDrKI--ef~~pDe~TkkkI 364 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKI--EFPLPDEKTKKKI 364 (440)
T ss_pred ccccCHhhcCCCcccccc--ccCCCchhhhcee
Confidence 999999999999999977 8899988877766
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-27 Score=217.03 Aligned_cols=153 Identities=25% Similarity=0.352 Sum_probs=133.2
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
..-+..+++.++|.+.+.++|.+.++.+.++|+.|..+|++.|+|+|||||||||||.+|+|+|++..+.|+.++.+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred ------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCC
Q 048683 281 ------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK 325 (398)
Q Consensus 281 ------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~ 325 (398)
...-++++|.-+... ++.-.|||++||+.. ..++-||++||+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnri 296 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRI 296 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEecccc
Confidence 233345555322111 677789999999988 4778899999999
Q ss_pred CCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 326 EKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 326 ~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|.|||||+||||+|+-+ .++.|+.+.+.+|
T Consensus 297 dild~allrpgridrki--efp~p~e~ar~~i 326 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKI--EFPPPNEEARLDI 326 (404)
T ss_pred ccccHhhcCCCcccccc--cCCCCCHHHHHHH
Confidence 99999999999999977 8899999988888
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-26 Score=238.99 Aligned_cols=165 Identities=24% Similarity=0.335 Sum_probs=147.6
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc------
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI------ 279 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~------ 279 (398)
..|++|+|..++|+.+.+.+.++.+++..|..++.+.+.|+|||||||||||.||.|+|..++..|+.+...++
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhcc
Q 048683 280 QFSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALL 333 (398)
Q Consensus 280 ~~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAll 333 (398)
.++..++.+|..+... +.+++||.+|||... -++++|+++|.+||.|||||+
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--cceEEEEEecCCccccCHhhc
Confidence 3678899998775432 889999999999987 478999999999999999999
Q ss_pred CCCchhhHhhhhcCCCChHHHHHH---Hh----------------hhcCCCHHHHHHHHH
Q 048683 334 RPGRMDQRAFNYLGISHHHLYEQM---LI----------------MEMNGTPAEAAGELA 374 (398)
Q Consensus 334 RpGR~D~l~~~~l~~~~~~~~~~i---l~----------------~~~~~tpa~i~~~l~ 374 (398)
||||+|+++ |-++|+.+.|-+| +. ....+|.|+++..|-
T Consensus 822 RpGRlD~~v--~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 822 RPGRLDKLV--YCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred CCCccceee--eCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 999999988 9999999888888 11 123577888887764
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-27 Score=244.85 Aligned_cols=149 Identities=33% Similarity=0.462 Sum_probs=136.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
...+|+|++|.++.|+++.+.++ |+++|..|..+|...|+|+||+||||||||+||+|+|.+.+.|++.++.+++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 44689999999999999988776 99999999999999999999999999999999999999999999999999873
Q ss_pred ---ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 281 ---FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
..+.++.+|.++... .++++||.+|||+.+ +++++||++||+||-+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVl 301 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVL 301 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccc
Confidence 578899998876542 589999999999985 5889999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||||+||||||+.+ .++.|+-..+++|
T Consensus 302 D~ALlRpgRFDRqI--~V~~PDi~gRe~I 328 (596)
T COG0465 302 DPALLRPGRFDRQI--LVELPDIKGREQI 328 (596)
T ss_pred hHhhcCCCCcceee--ecCCcchhhHHHH
Confidence 99999999999977 7899998888888
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.93 E-value=4.4e-26 Score=229.96 Aligned_cols=168 Identities=25% Similarity=0.329 Sum_probs=138.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
-.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|.++++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
+...++++|..+... +.+..||+.+||+.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 233455554322110 356678899999876 35789999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH---Hh----------------hhcCCCHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM---LI----------------MEMNGTPAEAAGEL 373 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~----------------~~~~~tpa~i~~~l 373 (398)
.||||++||||||+.+ +++.|+.+.+.+| +. ....+|++||...+
T Consensus 296 ~LDpAllR~GRfd~~I--~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~ 359 (398)
T PTZ00454 296 TLDPALLRPGRLDRKI--EFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAIC 359 (398)
T ss_pred hCCHHHcCCCcccEEE--EeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999987 8999998887777 11 12357888887766
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=213.80 Aligned_cols=154 Identities=25% Similarity=0.334 Sum_probs=132.3
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+.-.+..|+.|++|..++.+.+++.++.++-+|+.|-++|+.+|+|+|||||||||||.+|+|+|+..+.-|+.+-.|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 55567789999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred c------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ...-++++|.-+..+ ++.-.|++++||+.. ..++-|+++||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCC
Confidence 2 233455666443322 677789999999987 467889999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|+.|||||+||||+|+-+ .+++|+.+-+..|
T Consensus 326 pdtldpallrpgrldrkv--ef~lpdlegrt~i 356 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKV--EFGLPDLEGRTHI 356 (435)
T ss_pred CCCcCHhhcCCcccccce--eccCCccccccee
Confidence 999999999999999966 7888876655544
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=7.1e-26 Score=233.23 Aligned_cols=151 Identities=23% Similarity=0.362 Sum_probs=125.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc----------EE
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD----------IY 272 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~----------~~ 272 (398)
.++.+|++|+|.+.+++++++.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 45679999999999999999999999999999999999999999999999999999999999998765 33
Q ss_pred Eeeccccc------ChHHHHHHHHcCcc-------------------------------cccchhhhhhhcCCcccCCCC
Q 048683 273 HLDLTDIQ------FSSDLQFLLLTMPS-------------------------------RVTLSGLLNFIDGSWSWCGEG 315 (398)
Q Consensus 273 ~l~~s~~~------~~~~L~~l~~~~~~-------------------------------~~~ls~LL~~lDgl~s~~~~~ 315 (398)
.++.+++. .+..++.+|..+.. +..++.||++|||+.+ .++
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~~ 333 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LDN 333 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--CCc
Confidence 44433331 22334444432211 0346789999999976 367
Q ss_pred eEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 316 RIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 316 vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++||+|||+++.|||||+||||||+.+ +++.|+.+.+.+|
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I--~~~~Pd~e~r~~I 373 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKI--RIERPDAEAAADI 373 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEE--EeCCCCHHHHHHH
Confidence 999999999999999999999999987 8999999999998
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-26 Score=212.66 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=130.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc--
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI-- 279 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~-- 279 (398)
-.+..+++||+|.+.+.+++.+.+..++.+++.|.++|+.+|+|+|+|||||||||.+|+|.|...+..|..+....+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 344458999999999999999999999999999999999999999999999999999999999999999888876654
Q ss_pred ---cChHHH-HHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 280 ---QFSSDL-QFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 280 ---~~~~~L-~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
+....| +..|.-+..+ ++.-.|||++||+.+ .+.+-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence 222333 3333222111 677789999999988 57899999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.|||||+|.||+|+-+ .++.|+.+.+.+|
T Consensus 322 iLDPALlRSGRLDRKI--EfP~Pne~aRarI 350 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKI--EFPHPNEEARARI 350 (424)
T ss_pred ccCHHHhhcccccccc--cCCCCChHHHHHH
Confidence 9999999999999977 8999999999988
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-25 Score=215.26 Aligned_cols=148 Identities=28% Similarity=0.422 Sum_probs=128.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
+.+.|+||+|..+.|+.|.+.+..++.-|++|+.+..|| +|+|++||||||||+||+|+|.|++-.|+.++.+.+.
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 346899999999999999999999999999999877666 6999999999999999999999999999999998884
Q ss_pred --ChHHHHHHHHcCcc----------------------------cccchhhhhhhcCCcccCCCC---eEEEEecCCCCC
Q 048683 281 --FSSDLQFLLLTMPS----------------------------RVTLSGLLNFIDGSWSWCGEG---RIILFWTNHKEK 327 (398)
Q Consensus 281 --~~~~L~~l~~~~~~----------------------------~~~ls~LL~~lDgl~s~~~~~---vivI~TTN~~~~ 327 (398)
....|.+++++++. ++..+.||.+|||+.... ++ |+|+++||.||+
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~-e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL-ENSKVVMVLAATNFPWD 364 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc-ccceeEEEEeccCCCcc
Confidence 34556666655432 177889999999997653 44 778899999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||.||+| ||.+.| |+++|+.+.+..+
T Consensus 365 iDEAlrR--RlEKRI--yIPLP~~~~R~~L 390 (491)
T KOG0738|consen 365 IDEALRR--RLEKRI--YIPLPDAEARSAL 390 (491)
T ss_pred hHHHHHH--HHhhhe--eeeCCCHHHHHHH
Confidence 9999999 999977 9999999888876
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.3e-24 Score=235.92 Aligned_cols=150 Identities=24% Similarity=0.356 Sum_probs=133.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
+..+|++++|.+++|+.|.+.+.+++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.++.+++.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred ---ChHHHHHHHHcCccc---------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 281 ---FSSDLQFLLLTMPSR---------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~~---------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
++..++++|..+... +.++.||.+|||+.. ..+++||+|||+++.|||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDP 605 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCH
Confidence 355677777543211 456789999999876 468999999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|++||||||+.+ |+++|+.+.+.+|
T Consensus 606 allRpgRfd~~i--~v~~Pd~~~R~~i 630 (733)
T TIGR01243 606 ALLRPGRFDRLI--LVPPPDEEARKEI 630 (733)
T ss_pred hhcCCCccceEE--EeCCcCHHHHHHH
Confidence 999999999988 9999999988888
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.92 E-value=1.2e-24 Score=219.71 Aligned_cols=152 Identities=25% Similarity=0.318 Sum_probs=128.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
..+..+|++|+|.+++++++.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
+...++.+|..+... .++..+++++|++.+ ..+++||+|||+++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 233445555432110 245567788888765 45789999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.||+|++||||||+.+ +++.|+.+.+.+|
T Consensus 282 ~ld~allRpgRfd~~I--~v~~P~~~~R~~I 310 (389)
T PRK03992 282 ILDPAILRPGRFDRII--EVPLPDEEGRLEI 310 (389)
T ss_pred hCCHHHcCCccCceEE--EECCCCHHHHHHH
Confidence 9999999999999977 8999998888887
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=219.15 Aligned_cols=154 Identities=25% Similarity=0.338 Sum_probs=129.0
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+...++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred c------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ....++.+|..+... .++..||+.+||+.. ..++.||+|||+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr 331 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNR 331 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCC
Confidence 2 122344444321110 345668888998865 457899999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++.||||++||||||+.+ +++.|+.+.+.+|
T Consensus 332 ~d~LDpaLlRpGRfd~~I--~~~~Pd~~~R~~I 362 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKI--EFPNPDEKTKRRI 362 (438)
T ss_pred hHHhhHHhccCCeeEEEE--EeCCCCHHHHHHH
Confidence 999999999999999977 8999988888777
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-24 Score=224.31 Aligned_cols=151 Identities=26% Similarity=0.416 Sum_probs=136.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
....+|++++|.+..|+.+.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 445689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 281 ----FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
++..++++|..+... +.+++||.++||+.. .++++||+|||+|+.|||
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDP 393 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCH
Confidence 467788887654321 578899999999987 577999999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|++||||||.++ |+++|+...+.+|
T Consensus 394 a~lR~gRfd~~i--~v~~pd~~~r~~i 418 (494)
T COG0464 394 ALLRPGRFDRLI--YVPLPDLEERLEI 418 (494)
T ss_pred hhcccCccceEe--ecCCCCHHHHHHH
Confidence 999999999988 9999999888888
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=4.6e-24 Score=219.83 Aligned_cols=145 Identities=21% Similarity=0.290 Sum_probs=117.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
.+.+|++|+|.+.+|+.+.+....|. ....++|.+.++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34689999999999999987665553 345678999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHcCccc---------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 281 ---FSSDLQFLLLTMPSR---------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~~---------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
++..++++|..+... +.++.||++|++. ..+++||+|||+++.|||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCH
Confidence 355677666532211 3445566666642 357899999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|++||||||+.+ |+++|+.+.+.+|
T Consensus 376 allR~GRFD~~i--~v~lP~~~eR~~I 400 (489)
T CHL00195 376 EILRKGRFDEIF--FLDLPSLEEREKI 400 (489)
T ss_pred HHhCCCcCCeEE--EeCCcCHHHHHHH
Confidence 999999999988 9999999888888
No 25
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.2e-25 Score=206.99 Aligned_cols=149 Identities=25% Similarity=0.352 Sum_probs=126.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC---
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF--- 281 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~--- 281 (398)
..+|+.+.|.-++..++++-++.++.+++.+.++|+.+|.|+|||||||||||.+|+++|..++++++.+..+.+.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999888742
Q ss_pred ---hHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 282 ---SSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 282 ---~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
..-+++.|..+... +|+-.|+++|||+.. -..+-+|+|||+|+.||
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTLD 285 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCccccc
Confidence 23355666543321 677789999999987 46788999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||+||||+|+.+ .+++|+...+-+|
T Consensus 286 paLlRpGRldrk~--~iPlpne~~r~~I 311 (388)
T KOG0651|consen 286 PALLRPGRLDRKV--EIPLPNEQARLGI 311 (388)
T ss_pred hhhcCCcccccee--ccCCcchhhceee
Confidence 9999999999954 5666655544433
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.90 E-value=1.2e-23 Score=218.98 Aligned_cols=150 Identities=31% Similarity=0.469 Sum_probs=128.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
.+..+|++++|.+++|+++.+.+. ++.+++.|.+.|..+++|+|||||||||||++|+++|++++.+++.++.+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 456799999999999999987665 68999999999999999999999999999999999999999999999987652
Q ss_pred ----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 281 ----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
+...++.+|..+... .+++.||.+||++.+ .++++||+|||+++.
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRPDV 205 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCChhh
Confidence 345566666543211 456779999999866 467999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||||++||||||+.+ +++.|+.+.+.+|
T Consensus 206 ld~al~r~gRfd~~i--~i~~Pd~~~R~~i 233 (495)
T TIGR01241 206 LDPALLRPGRFDRQV--VVDLPDIKGREEI 233 (495)
T ss_pred cCHHHhcCCcceEEE--EcCCCCHHHHHHH
Confidence 999999999999977 8999998888887
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=193.27 Aligned_cols=146 Identities=22% Similarity=0.317 Sum_probs=124.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
.....+|||++|+++.|+... .+..++.+|+.|.+| .|+++|||||||||||++|+|+|++.+.|++.+.++++.
T Consensus 114 ~~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 445679999999999998875 455699999877654 489999999999999999999999999999999998873
Q ss_pred -----ChHHHHHHHHcCccc---------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR---------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~---------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
....+++++..+... .+++.||.+|||+.+ +++++.|++||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhc
Confidence 245677777654332 678899999999986 6899999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||+.. ||..-| .+.+|+.+-+.+|
T Consensus 268 D~aiRs--RFEeEI--EF~LP~~eEr~~i 292 (368)
T COG1223 268 DPAIRS--RFEEEI--EFKLPNDEERLEI 292 (368)
T ss_pred CHHHHh--hhhhee--eeeCCChHHHHHH
Confidence 999999 999977 7788888877777
No 28
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=6.1e-23 Score=201.04 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc------ChHHHHHHHHcCcc------c------
Q 048683 234 YYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ------FSSDLQFLLLTMPS------R------ 295 (398)
Q Consensus 234 ~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~~~------~------ 295 (398)
+....|+.+|++++||||||||||++|+|+|+++|.+++.++.+++. ++..++++|..+.. .
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 33447889999999999999999999999999999999999998874 46778888865431 0
Q ss_pred -------------------cc-chhhhhhhcCC--------c--ccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhh
Q 048683 296 -------------------VT-LSGLLNFIDGS--------W--SWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNY 345 (398)
Q Consensus 296 -------------------~~-ls~LL~~lDgl--------~--s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~ 345 (398)
+. ...||+.+|+. | ......++||+|||+|+.|||||+||||||+ +
T Consensus 219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk----~ 294 (413)
T PLN00020 219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK----F 294 (413)
T ss_pred ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc----e
Confidence 12 35788888864 3 1124568999999999999999999999999 4
Q ss_pred cCCCChHHHHHH---HhhhcCCCHHHHHHHHH
Q 048683 346 LGISHHHLYEQM---LIMEMNGTPAEAAGELA 374 (398)
Q Consensus 346 l~~~~~~~~~~i---l~~~~~~tpa~i~~~l~ 374 (398)
+.+|+.+-+.+| +.....++..++..+.-
T Consensus 295 i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~ 326 (413)
T PLN00020 295 YWAPTREDRIGVVHGIFRDDGVSREDVVKLVD 326 (413)
T ss_pred eCCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 568999999999 45567888888877664
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.6e-23 Score=196.20 Aligned_cols=164 Identities=23% Similarity=0.282 Sum_probs=132.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
+...|+|++|.+..|+.|.+.+..+++-|++|..-..| .+|+|||||||||||.||+|+|.+.+..|+.++.+++.
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P-wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP-WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCc-ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 44679999999999999999999999999999864444 57999999999999999999999999999999999984
Q ss_pred --ChHHH-HHHHHcCcc--------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 281 --FSSDL-QFLLLTMPS--------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 281 --~~~~L-~~l~~~~~~--------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
....| .++|.-+.. +++...||.+|.|+... .++++|+++||-|+.||.|
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHH
Confidence 23334 444432211 16677899999998764 6889999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHHHhhh-----cCCCHHHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQMLIME-----MNGTPAEAAGEL 373 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~il~~~-----~~~tpa~i~~~l 373 (398)
+.| ||++.| |+++|+...+..++... ..+|.+++.++-
T Consensus 286 IRR--RFekRI--YIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~ 328 (439)
T KOG0739|consen 286 IRR--RFEKRI--YIPLPEAHARARMFKLHLGDTPHVLTEQDFKELA 328 (439)
T ss_pred HHH--Hhhcce--eccCCcHHHhhhhheeccCCCccccchhhHHHHH
Confidence 999 999988 99999988888872222 245556655543
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.88 E-value=2.1e-22 Score=213.58 Aligned_cols=150 Identities=29% Similarity=0.424 Sum_probs=126.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
....+|+|++|.++.|+++.+.+ .+++.++.|..+|...++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 44579999999999999997655 578999999999999999999999999999999999999999999999987653
Q ss_pred ----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 281 ----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
....++.+|..+... .+++.||.++||+.. ..+++||+|||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHh
Confidence 234455555432211 456778999999866 468999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||||+||||||+.+ .+++|+.+.+.+|
T Consensus 334 LD~ALlRpGRFd~~I--~v~lPd~~~R~~I 361 (638)
T CHL00176 334 LDAALLRPGRFDRQI--TVSLPDREGRLDI 361 (638)
T ss_pred hhhhhhccccCceEE--EECCCCHHHHHHH
Confidence 999999999999977 8899988888877
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.88 E-value=1.5e-22 Score=226.57 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=120.1
Q ss_pred cChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccCh---------------------------
Q 048683 230 NGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFS--------------------------- 282 (398)
Q Consensus 230 ~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~--------------------------- 282 (398)
.++..+.++|..+++|+||+||||||||+||+|+|.++++|++.++++++...
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 45667788999999999999999999999999999999999999998775421
Q ss_pred ----------------------HHHHHHHHcCccc--------------------ccchhhhhhhcCCccc-CCCCeEEE
Q 048683 283 ----------------------SDLQFLLLTMPSR--------------------VTLSGLLNFIDGSWSW-CGEGRIIL 319 (398)
Q Consensus 283 ----------------------~~L~~l~~~~~~~--------------------~~ls~LL~~lDgl~s~-~~~~vivI 319 (398)
..++.+|..+... .+++.||++|||.... ..++++||
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVI 1776 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVI 1776 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEE
Confidence 1134455433221 3578899999987532 24679999
Q ss_pred EecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-------------------hhhcCCCHHHHHHHHH---
Q 048683 320 FWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-------------------IMEMNGTPAEAAGELA--- 374 (398)
Q Consensus 320 ~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-------------------~~~~~~tpa~i~~~l~--- 374 (398)
||||+|+.|||||+||||||+.+ +++.|+.+-+.++ + ....++++||++..+-
T Consensus 1777 AATNRPD~LDPALLRPGRFDR~I--~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCI--KIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EeCCCcccCCHhHcCCCCCCeEE--EeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999977 7887776555554 1 0112467788776541
Q ss_pred -----c------cccHHHHHHHHHHHHHH
Q 048683 375 -----N------SAEAQVSLQGLIKFLHV 392 (398)
Q Consensus 375 -----~------~~d~~~al~~l~~~l~~ 392 (398)
+ ..+.+.|++..+-.++.
T Consensus 1855 liAirq~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1855 SISITQKKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred HHHHHcCCCccCHHHHHHHHHHHHhhhhh
Confidence 1 24677888877766554
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.87 E-value=6.1e-22 Score=198.50 Aligned_cols=152 Identities=24% Similarity=0.326 Sum_probs=124.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
..+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999987665421
Q ss_pred ------hHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 282 ------SSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 282 ------~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
...++.+|..+... ..+..++..+|++.. ..++.||+|||+++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 12233333221110 235567777887754 35789999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.+|+|++||||||+.+ +++.|+.+.+.+|
T Consensus 273 ~ld~al~r~grfd~~i--~v~~P~~~~r~~I 301 (364)
T TIGR01242 273 ILDPALLRPGRFDRII--EVPLPDFEGRLEI 301 (364)
T ss_pred hCChhhcCcccCceEE--EeCCcCHHHHHHH
Confidence 9999999999999976 8899998888887
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=217.01 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=133.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-----CcEEEeec
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK-----FDIYHLDL 276 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~-----~~~~~l~~ 276 (398)
.....+|++|+|.+..+..+.+-+..++.+|+.|.++++.+|||+|||||||||||++|+|+|..+. ..++.-+.
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3445689999999999999999999999999999999999999999999999999999999999884 33443333
Q ss_pred ccc------cChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 277 TDI------QFSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 277 s~~------~~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
.+. ..+..++-+|..+..+ .+++.||..|||+.+ ...++||++||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds--RgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS--RGQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--CCceEEEcccCC
Confidence 332 2356677777765543 567889999999988 478999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH-HhhhcCCC
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM-LIMEMNGT 365 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-l~~~~~~t 365 (398)
++.+||||+||||||+.+ |+++|+.+.+.+| .+....+.
T Consensus 416 pda~dpaLRRPgrfdref--~f~lp~~~ar~~Il~Ihtrkw~ 455 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREF--YFPLPDVDARAKILDIHTRKWE 455 (1080)
T ss_pred ccccchhhcCCcccceeE--eeeCCchHHHHHHHHHhccCCC
Confidence 999999999999999987 9999999999988 44444433
No 34
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.7e-22 Score=193.68 Aligned_cols=149 Identities=22% Similarity=0.340 Sum_probs=125.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC--
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF-- 281 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (398)
..+|+||+|.+.+++.+.+.+..++++|++|...+ ..+++|+|||||||||||++|+|+|++.|.+++.++.+.+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 45899999999999999999999999999998544 457899999999999999999999999999999999998742
Q ss_pred ---hHHHHHHHHcCccc---------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 282 ---SSDLQFLLLTMPSR---------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 282 ---~~~L~~l~~~~~~~---------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
...+.+.++..+.+ .+.++|+...||+.+..+..++|.++||+|.+||.|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeA 247 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEA 247 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHH
Confidence 23333333322222 456778889999999766678999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++| ||-+.+ ++++|+..-+.+|
T Consensus 248 iiR--R~p~rf--~V~lP~~~qR~kI 269 (386)
T KOG0737|consen 248 IIR--RLPRRF--HVGLPDAEQRRKI 269 (386)
T ss_pred HHH--hCccee--eeCCCchhhHHHH
Confidence 999 998866 8999999999998
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.84 E-value=1e-20 Score=202.07 Aligned_cols=149 Identities=30% Similarity=0.461 Sum_probs=125.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
...+|+++.|.+..++++.+.+. ++..++.|...+...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34579999999999999977665 57778888888999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 281 ---FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
....++.+|..+... .+++.||.+|||+.+ .++++||+|||+|+.|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~l 303 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVL 303 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhc
Confidence 234555555432111 367889999999876 4689999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||++||||||+.+ ++++|+.+.+.+|
T Consensus 304 D~Al~RpgRfdr~i--~v~~Pd~~~R~~I 330 (644)
T PRK10733 304 DPALLRPGRFDRQV--VVGLPDVRGREQI 330 (644)
T ss_pred CHHHhCCcccceEE--EcCCCCHHHHHHH
Confidence 99999999999977 8999998888877
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-20 Score=188.58 Aligned_cols=154 Identities=21% Similarity=0.340 Sum_probs=118.4
Q ss_pred ccccCCCCcccc--ccCh-HHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-EEEee
Q 048683 200 VVLQHAMTFKDL--ALDS-ELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD-IYHLD 275 (398)
Q Consensus 200 ~~~~~p~~f~~l--~g~~-~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~-~~~l~ 275 (398)
....+.-.|+++ +|.+ +--+..+.+...-.-.|+.-.++|++.-+|+|||||||||||.+|+.|...++.. --.++
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 334555678886 3333 3333334444444557899999999999999999999999999999999999852 33344
Q ss_pred cccc------cChHHHHHHHHcCccc------------------------------------ccchhhhhhhcCCcccCC
Q 048683 276 LTDI------QFSSDLQFLLLTMPSR------------------------------------VTLSGLLNFIDGSWSWCG 313 (398)
Q Consensus 276 ~s~~------~~~~~L~~l~~~~~~~------------------------------------~~ls~LL~~lDgl~s~~~ 313 (398)
..++ .++++++++|..+... .++++||.-|||+.+-
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL-- 367 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL-- 367 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--
Confidence 4443 3678899998765432 6789999999999884
Q ss_pred CCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 314 EGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 314 ~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++++||+-||++|.||+||+|||||.. +..+.+|++.-|-+|
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEV--qmEIsLPDE~gRlQI 409 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEV--QMEISLPDEKGRLQI 409 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEE--EEEEeCCCccCceEE
Confidence 789999999999999999999999998 337888887766655
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=2.6e-20 Score=202.27 Aligned_cols=150 Identities=26% Similarity=0.404 Sum_probs=128.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
...+|++|+|.+++++.|.+.+..++.+++.|+.+|+.+++|+|||||||||||++++++|++++.+++.++.+++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred ---ChHHHHHHHHcCcc--------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 281 ---FSSDLQFLLLTMPS--------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~--------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
+...++.+|..+.. +..++.|++.||++.. ...++||+|||+++.||||
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~a 330 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDPA 330 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCHH
Confidence 23456666654221 1345678999999865 4578899999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+.||||||+.+ ++++|+.+.+.+|
T Consensus 331 l~r~gRfd~~i--~i~~P~~~~R~~I 354 (733)
T TIGR01243 331 LRRPGRFDREI--VIRVPDKRARKEI 354 (733)
T ss_pred HhCchhccEEE--EeCCcCHHHHHHH
Confidence 99999999976 7899988888877
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-19 Score=187.14 Aligned_cols=148 Identities=26% Similarity=0.378 Sum_probs=133.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
++.+ ++++|...+-..+.+.+..++.++..+...|.++++|+|+|||||||||.+++|+|++.++.++.++.+++.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5667 899999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHcCcc--------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 281 ---FSSDLQFLLLTMPS--------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~--------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
++++|++.|..+.. +++.++|+..+||+.+ ...+||++|||+|+.||||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccChh
Confidence 57788888865432 1667889999999975 4789999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+.| ||||+.+ .+++|+...+.+|
T Consensus 337 lRR-gRfd~ev--~IgiP~~~~RldI 359 (693)
T KOG0730|consen 337 LRR-GRFDREV--EIGIPGSDGRLDI 359 (693)
T ss_pred hhc-CCCccee--eecCCCchhHHHH
Confidence 999 9999977 8999998888888
No 39
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5e-19 Score=177.13 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=136.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...+..|++++|.+..|+.+.+.+.+++.+++.|..+. ++.+|+||.||||||||+|++|+|.|.+..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44557899999999999999999999999999998764 45689999999999999999999999999999999998842
Q ss_pred ------hHHHHHHHHcCc--------------------------ccccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 282 ------SSDLQFLLLTMP--------------------------SRVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 282 ------~~~L~~l~~~~~--------------------------~~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
+.-++.+|.-+. +++...++|..+||..+...+.++||+|||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 233444442111 116677899999999888778899999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH---Hhh-h-cCCCHHHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM---LIM-E-MNGTPAEAAGEL 373 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i---l~~-~-~~~tpa~i~~~l 373 (398)
.|++| ||-+.+ |+++|+.+.+..+ ++. . ..++..++..+.
T Consensus 305 ea~~R--rf~kr~--yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~ 349 (428)
T KOG0740|consen 305 EAARR--RFVKRL--YIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLA 349 (428)
T ss_pred HHHHH--Hhhcee--eecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 99999 999966 9999999988887 332 2 345666665544
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=152.91 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=111.2
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhcCC---------cEEEeec
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHLKF---------DIYHLDL 276 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l~~---------~~~~l~~ 276 (398)
-|++++.+.++|+++.......+.-.+...... +.|.|-+|||||||||||+|++|+|+++-. .++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 488899999999999988876665333222222 567888999999999999999999999853 4667776
Q ss_pred cccc------ChHHHHHHHHcCccc-----------------------------------ccchhhhhhhcCCcccCCCC
Q 048683 277 TDIQ------FSSDLQFLLLTMPSR-----------------------------------VTLSGLLNFIDGSWSWCGEG 315 (398)
Q Consensus 277 s~~~------~~~~L~~l~~~~~~~-----------------------------------~~ls~LL~~lDgl~s~~~~~ 315 (398)
..+- +.+-+.++|++...- +.++.+|.+||.+.. ..+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~--~~N 297 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR--YPN 297 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc--CCC
Confidence 5542 233344444432110 789999999999987 478
Q ss_pred eEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 316 RIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 316 vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++|.+|+|-.+.||.|+.. |-|... |+|.|....+-+|
T Consensus 298 vliL~TSNl~~siD~AfVD--RADi~~--yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVD--RADIVF--YVGPPTAEAIYEI 335 (423)
T ss_pred EEEEeccchHHHHHHHhhh--Hhhhee--ecCCccHHHHHHH
Confidence 9999999999999999998 899866 9999987777666
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=3.4e-16 Score=132.85 Aligned_cols=95 Identities=34% Similarity=0.521 Sum_probs=77.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc------ChHHHHHHHHcC---c-cc--------------------
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ------FSSDLQFLLLTM---P-SR-------------------- 295 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~---~-~~-------------------- 295 (398)
+|||||||||||++|+++|+.++.+++.+++.++. ....+...|..+ . ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 68999999999999999999999999999998875 244566666542 1 11
Q ss_pred ---ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHh
Q 048683 296 ---VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRA 342 (398)
Q Consensus 296 ---~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~ 342 (398)
..++.|++.+|..... ..+++||+|||+++.+||+++| ||||..+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i 128 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRI 128 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEE
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEE
Confidence 3366788888887663 3568999999999999999999 9999854
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.55 E-value=3.5e-14 Score=131.41 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=105.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
..+|.+|++++|++++++.+.-.+.......+ ....+|||||||+|||+||..||++++.++..++.+.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~--------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGE--------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCC--------CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 56899999999999999988666654443221 2246999999999999999999999999999999888877
Q ss_pred hHHHHHHHHcCccc-------------ccchhhhhhhcCCc-----ccCC---------CCeEEEEecCCCCCCChhccC
Q 048683 282 SSDLQFLLLTMPSR-------------VTLSGLLNFIDGSW-----SWCG---------EGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 282 ~~~L~~l~~~~~~~-------------~~ls~LL~~lDgl~-----s~~~---------~~vivI~TTN~~~~LDpAllR 334 (398)
..++..++...... .....|+..|+... ..+. ...-+|++|++...|.+.|.-
T Consensus 89 ~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd 168 (233)
T PF05496_consen 89 AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD 168 (233)
T ss_dssp CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT
T ss_pred HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh
Confidence 78888888765443 11222444443211 1101 234689999999999999998
Q ss_pred CCchhhHhhhhcCCCChHHHHHHH-----hhhcCCCHHHHHHHHHc-cccHHHHHHHHH
Q 048683 335 PGRMDQRAFNYLGISHHHLYEQML-----IMEMNGTPAEAAGELAN-SAEAQVSLQGLI 387 (398)
Q Consensus 335 pGR~D~l~~~~l~~~~~~~~~~il-----~~~~~~tpa~i~~~l~~-~~d~~~al~~l~ 387 (398)
||-... .+..-+.+...+|+ ..+..+++....+.-.+ +++|+.|.+-|.
T Consensus 169 --RFgi~~--~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 169 --RFGIVL--RLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp --TSSEEE--E----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred --hcceec--chhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 887743 23333455555552 23344444444443333 478998876543
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=142.17 Aligned_cols=185 Identities=22% Similarity=0.262 Sum_probs=131.8
Q ss_pred EcCcchhHHHHHHHHHHHHHhHHHHhcCceEEEEecCCcceecccccccC------------CCCccccccChHHHHHHH
Q 048683 155 FHKKHTDTVLNLYLPHVLKKAKAVKEDCNTVKLHTVLRNCWDANNVVLQH------------AMTFKDLALDSELKKMII 222 (398)
Q Consensus 155 ~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~------------p~~f~~l~g~~~~k~~l~ 222 (398)
|..+.-.+|..+|+..++.....+++..+.. .+|...-..+.+ ...|+++++.+.+++.|.
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~-------~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie 368 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGR-------FPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIE 368 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhcccc-------CCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHH
Confidence 4556667899999999998888777765532 234221011122 224999999999999996
Q ss_pred HHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-----ChHHHHHHHHcCccccc
Q 048683 223 KDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-----FSSDLQFLLLTMPSRVT 297 (398)
Q Consensus 223 ~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-----~~~~L~~l~~~~~~~~~ 297 (398)
+....--+.+ ....+-|++|||||||||||++|+-+|.+.|.++..+...++. .-..++++|+=+.. .
T Consensus 369 ~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakk--S 441 (630)
T KOG0742|consen 369 DLAIATANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKK--S 441 (630)
T ss_pred HHHHHhcccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhh--c
Confidence 6554333322 2345568899999999999999999999999999999888874 24567777754322 2
Q ss_pred chhhhhhhcCCcc--------------------------cCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCCh
Q 048683 298 LSGLLNFIDGSWS--------------------------WCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHH 351 (398)
Q Consensus 298 ls~LL~~lDgl~s--------------------------~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~ 351 (398)
..+||-|||.... .....++++.+||+|.++|.|+-. |||.++ .+++|..
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~v--eFpLPGe 517 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVV--EFPLPGE 517 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhhee--ecCCCCh
Confidence 2344444442211 112567899999999999999998 999988 8899988
Q ss_pred HHHHHH
Q 048683 352 HLYEQM 357 (398)
Q Consensus 352 ~~~~~i 357 (398)
+.+..+
T Consensus 518 EERfkl 523 (630)
T KOG0742|consen 518 EERFKL 523 (630)
T ss_pred HHHHHH
Confidence 888777
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=99.53 E-value=7.6e-14 Score=145.02 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=122.5
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
.|.. .+.|.+|++|+|+++.++.+.+.+..+.+ |. +++++|||||||||||++|+++|++++++++.
T Consensus 3 ~W~e----KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 3 PWVE----KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred Cchh----hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4755 89999999999999999999988876653 22 26789999999999999999999999999999
Q ss_pred eecccccChHHHHHHHHcCcccccch------hhhhhhcCCcccC-------------CCCeEEEEecCCCCCCCh-hcc
Q 048683 274 LDLTDIQFSSDLQFLLLTMPSRVTLS------GLLNFIDGSWSWC-------------GEGRIILFWTNHKEKLDP-ALL 333 (398)
Q Consensus 274 l~~s~~~~~~~L~~l~~~~~~~~~ls------~LL~~lDgl~s~~-------------~~~vivI~TTN~~~~LDp-All 333 (398)
+++++..+...+.+++........+. -++++.|++.... .....||++||.+..+++ .|.
T Consensus 70 lnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 70 LNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred EcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 99998776666666554433221111 1444555543210 123457889999998888 555
Q ss_pred CCCchhhHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 334 RPGRMDQRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 334 RpGR~D~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
+ |+..+ .++.++......+ ..++..+++..+..+.. ..+|.+.|+..|..+
T Consensus 150 s--r~~~I---~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 N--ACLMI---EFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred c--cceEE---EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 44332 3444443333322 23456678777766654 358999998888764
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=7.3e-14 Score=142.89 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=114.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+.+.|...+. . ...+..+||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~--------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----S--------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 7899999999999998887766654 1 123456999999999999999999999876
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCc-----cc--------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMP-----SR--------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~-----~~--------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++...-.+.++++++..... .+ ...+.||..|+.. ...+++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP----p~~viF 154 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP----PAHIVF 154 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC----CCceEE
Confidence 356666543333444554433211 11 3455677767553 357888
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++||.++.|.++++. |+.+.- +-+++..++...+ -.++..++++.+..+.- ..+|++.|+.-|...+
T Consensus 155 ILaTte~~kI~~TI~S--RCq~~~--f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 155 ILATTEFHKIPETILS--RCQDFI--FKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred EeecCChhhccHHHHh--hhheee--ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999998 766522 4556555554444 22456677777655543 4578888877765544
No 46
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.2e-13 Score=142.49 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=113.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++++++.+...+. .. ..+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 6899999999999988777665443 21 24567999999999999999999999875
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCcc------c-------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPS------R-------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~------~-------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++++.-.+.+.++++...... . ...+.||..++.. +..+++
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p----~~~vv~ 150 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP----PSHVVF 150 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC----CCcEEE
Confidence 5777777543334555554332211 0 2234466666543 345777
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++||.++.|++++.+ |+..+- +-+++..++..-+ ..++..+++..+..+.. ..+|.+.++..|....
T Consensus 151 Ilattn~~kl~~~L~S--R~~vv~--f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIIS--RCQVIE--FRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhc--CcEEEE--ECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7888888899999998 665422 4455555554444 22345788777666554 4578888887776544
No 47
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.50 E-value=8.9e-14 Score=132.66 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=115.6
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC---
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF--- 269 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--- 269 (398)
..|.. .+.|.+|++++|++.+.+.+...+.. - .--.||||||||||||+.|.|+|.++..
T Consensus 24 ~swte----KYrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~ 86 (346)
T KOG0989|consen 24 RSWTE----KYRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQL 86 (346)
T ss_pred cchHH----HhCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccc
Confidence 35755 89999999999999999999888763 1 1235999999999999999999999875
Q ss_pred ---cEEEeecccccChHHHHH-------HHHcCc-c--------------------cccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ---DIYHLDLTDIQFSSDLQF-------LLLTMP-S--------------------RVTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ---~~~~l~~s~~~~~~~L~~-------l~~~~~-~--------------------~~~ls~LL~~lDgl~s~~~~~viv 318 (398)
-+.+++.++-...+-.+. +..... . ....+.|...||... ..+.+
T Consensus 87 ~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s----~~trF 162 (346)
T KOG0989|consen 87 FPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS----RTTRF 162 (346)
T ss_pred cccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc----cceEE
Confidence 244555555432211111 111110 0 034455677777642 45788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHH---H-HhhhcCCCHHHHHHHHHcc-ccHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQ---M-LIMEMNGTPAEAAGELANS-AEAQVSLQGLIK 388 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~---i-l~~~~~~tpa~i~~~l~~~-~d~~~al~~l~~ 388 (398)
|+.||+++.|.+-+.. |+.. +.|-++++...-.. | -.++..+.+..+..++..+ +|-+.|+-.|..
T Consensus 163 iLIcnylsrii~pi~S--RC~K--frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVS--RCQK--FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred EEEcCChhhCChHHHh--hHHH--hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999999998 8877 33666766544333 3 5567788888877776544 566655544443
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.8e-13 Score=145.34 Aligned_cols=170 Identities=17% Similarity=0.190 Sum_probs=116.1
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|++.+++.|.+.+. +...++.|||+||+|||||++++++|+.+++
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 37899999999999999888776653 1134567999999999999999999998864
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
++++++.++-...+++++++..... + ...+.||..|+.. ...++
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP----P~~v~ 151 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP----PPHVK 151 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc----CCCeE
Confidence 4677766544444566666543211 1 2245566666654 34688
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
||++||.+++|.+.++. |+-++ .+-.++..++...+ + .++..+++..+..+.- ..++.+.++.-+...+
T Consensus 152 FILaTtd~~KIp~TIrS--RCq~f--~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 152 FILATTDPQKIPVTVLS--RCLQF--NLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EEEEECChhhccchhhh--heEEE--ecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999997 66552 24445555554333 2 3445677766665553 4578888877665544
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.48 E-value=6.7e-13 Score=131.37 Aligned_cols=174 Identities=16% Similarity=0.117 Sum_probs=117.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...|.+|++++|.++.++.+...+...... ...++++|||||||||||++|+++|++++.++..++.+.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 567889999999999999887777544321 133568999999999999999999999999988887766665
Q ss_pred hHHHHHHHHcCccc-------------ccchhhhhhhcCCc---------cc-----CCCCeEEEEecCCCCCCChhccC
Q 048683 282 SSDLQFLLLTMPSR-------------VTLSGLLNFIDGSW---------SW-----CGEGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 282 ~~~L~~l~~~~~~~-------------~~ls~LL~~lDgl~---------s~-----~~~~vivI~TTN~~~~LDpAllR 334 (398)
..++..++...... .....|.+.++... +. .-....+|++||++..++++|.+
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH
Confidence 66666666543322 01111223333211 00 01236789999999999999988
Q ss_pred CCchhhHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHH
Q 048683 335 PGRMDQRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLI 387 (398)
Q Consensus 335 pGR~D~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~ 387 (398)
||+..+ .++.++.+...+| ......++|+.+..+.. +.+++..+...+.
T Consensus 170 --Rf~~~~--~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 --RFGIVQ--RLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred --hcCeee--ecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 887644 5666666666666 22345677776665553 3467765555444
No 50
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.7e-13 Score=142.28 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=114.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.|.+.+. . ...+..+||+||+|||||++|+++|+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~----~--------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALE----Q--------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHH----h--------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 7899999999999999988876664 1 123567999999999999999999999876
Q ss_pred -----------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCC
Q 048683 270 -----------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCG 313 (398)
Q Consensus 270 -----------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~ 313 (398)
++++++..+-.+-+++++++..... + ...+.||..|+.- .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP----P 152 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP----P 152 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC----C
Confidence 5666766543445566666543211 1 3445677777663 3
Q ss_pred CCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 314 EGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 314 ~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
..+++|++||.+++|.+.++. |+-++- +-.++..++...+ + .++..+++..+..+.. .++++..++.-+..
T Consensus 153 ~~v~FILaTtep~kLlpTIrS--RCq~f~--f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLS--RCLQFN--LKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred CCceEEEEeCChHhhhhHHHH--HHHhcc--cCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567899999999999999998 765522 3344444444443 2 2345666655544332 45777777765544
No 51
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=3e-13 Score=142.13 Aligned_cols=170 Identities=17% Similarity=0.218 Sum_probs=117.5
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|.+.+++.|...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 36889999999999999888876664 1133578999999999999999999999875
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++.++-..-.++++++..... + ...+.||..|+.. ++.+.
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP----P~~v~ 150 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP----PEHVK 150 (702)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC----CCCcE
Confidence 6777777654455667766653311 1 2344566666653 34667
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+|++||.+..+.+.+++ |+.++- +-+++..++...+ + .++..++++.+..+.. ..+|.+.|+..+.+++
T Consensus 151 FILaTtd~~kIp~TIlS--RCq~fe--FkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 151 FLFATTDPQKLPITVIS--RCLQFT--LRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred EEEEECChHhhhHHHHH--hhheee--ccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888999999999886 665522 4445555555444 2 3455677777766553 3578888877765544
No 52
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=3.5e-13 Score=132.90 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=112.2
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-----
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK----- 268 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~----- 268 (398)
+|.. .++|.+|++++|++++.+.|...+. .. .. ..+|||||||||||++|.++|+++.
T Consensus 2 ~w~~----kyrP~~l~~~~g~~~~~~~L~~~~~----~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (319)
T PLN03025 2 PWVE----KYRPTKLDDIVGNEDAVSRLQVIAR----DG--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYK 64 (319)
T ss_pred Chhh----hcCCCCHHHhcCcHHHHHHHHHHHh----cC--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCc
Confidence 4755 8999999999999988877755432 11 11 2589999999999999999999972
Q ss_pred CcEEEeecccccChHHHHHHHHcCc--------c--c------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 269 FDIYHLDLTDIQFSSDLQFLLLTMP--------S--R------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 269 ~~~~~l~~s~~~~~~~L~~l~~~~~--------~--~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
..+++++.++..+.+.++..+.... . + ...+.|+..++.. +....+|++||..+
T Consensus 65 ~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~----~~~t~~il~~n~~~ 140 (319)
T PLN03025 65 EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY----SNTTRFALACNTSS 140 (319)
T ss_pred cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc----cCCceEEEEeCCcc
Confidence 3477777776655445554432211 0 1 1122233334322 23456788999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
.+.++|.. |+..+ .+-++++.++...+ -.++..++++.+..++. ..+|.+.++..|..
T Consensus 141 ~i~~~L~S--Rc~~i--~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 141 KIIEPIQS--RCAIV--RFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred ccchhHHH--hhhcc--cCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999997 66442 24445555555544 23456788888776664 45899999888864
No 53
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=1.5e-12 Score=122.05 Aligned_cols=131 Identities=19% Similarity=0.285 Sum_probs=110.1
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CC
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KF 269 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~ 269 (398)
+...+ |....+..+++|+|.+.+|+.|++....|+.+. +.+.+||+|++|||||++++|+.+++ |+
T Consensus 13 ~~l~~--i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 13 GYLEP--IKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred CcEEe--cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 34555 778888999999999999999999999999853 46789999999999999999999976 68
Q ss_pred cEEEeecccccChHHHHHHHHcCccc--------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccC
Q 048683 270 DIYHLDLTDIQFSSDLQFLLLTMPSR--------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 270 ~~~~l~~s~~~~~~~L~~l~~~~~~~--------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllR 334 (398)
.++++...++..-..|...+...+.+ .....|...|||--...+++++|.+|+|+.+.++.-+.-
T Consensus 82 RlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 82 RLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred eEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 89999999988888888877765544 445668888998777778999999999999988887763
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.9e-13 Score=138.74 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=118.1
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 378999999999999999888776641 123567999999999999999999999865
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCc---c--c--------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMP---S--R--------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~---~--~--------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++.++-..-+++++++.... . + ...+.||..|+.. ++.++
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep----p~~~~ 151 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP----PSHVK 151 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc----CCCeE
Confidence 377777655445566766664321 1 1 3345577777664 35677
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+|++|+.++++.+.++. |+..+ .+-+++..++...+ + .++..++++.+..+.- ..++++.|+..+.+.+
T Consensus 152 fIlattd~~kl~~tI~S--Rc~~~--~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 152 FILATTDHHKLPVTVLS--RCLQF--HLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred EEEEECChHhchHHHHH--Hhhhh--hcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88888999999999887 66552 24556666655543 2 3455677777665543 3577887777765543
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=6.5e-13 Score=137.02 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=117.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK------------- 268 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~------------- 268 (398)
.++|.+|++++|++.+++.+.+.+. . ...+.++||+||||||||++|+++|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----L--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 6889999999999988887765443 1 13467899999999999999999998653
Q ss_pred -----------CcEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 269 -----------FDIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
.++++++.++-.+.+++++++...... ...+.||..|+.. ++.+++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP----p~~v~f 149 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP----APHVKF 149 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC----CCCeEE
Confidence 467888887655666777766443111 3355677777764 356788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++|+.+++|.++++. |+-.. .+-.++..++...+ -.++..++++.+..+.. ..++.+.++..+.+.+
T Consensus 150 Ilatte~~Kl~~tI~S--Rc~~~--~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli 222 (491)
T PRK14964 150 ILATTEVKKIPVTIIS--RCQRF--DLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAA 222 (491)
T ss_pred EEEeCChHHHHHHHHH--hheee--ecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999986 55442 23445555555544 23456677777766553 3477777777766554
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.44 E-value=1.7e-12 Score=126.75 Aligned_cols=165 Identities=14% Similarity=0.128 Sum_probs=106.3
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHH
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQ 286 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~ 286 (398)
+|++++|.+++++.+...+......+ ..+.+++||||||||||++|+++|++++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999887775443322 2345799999999999999999999999988877765554444454
Q ss_pred HHHHcCccc-------------ccchhhhhhhcCCc--------------ccCCCCeEEEEecCCCCCCChhccCCCchh
Q 048683 287 FLLLTMPSR-------------VTLSGLLNFIDGSW--------------SWCGEGRIILFWTNHKEKLDPALLRPGRMD 339 (398)
Q Consensus 287 ~l~~~~~~~-------------~~ls~LL~~lDgl~--------------s~~~~~vivI~TTN~~~~LDpAllRpGR~D 339 (398)
..+...... .....|++.++... .......++|++||++..++++++. ||.
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~ 151 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFG 151 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcc
Confidence 444332211 11122333332111 0011237889999999999999998 886
Q ss_pred hHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHH-ccccHHHHH
Q 048683 340 QRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELA-NSAEAQVSL 383 (398)
Q Consensus 340 ~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~-~~~d~~~al 383 (398)
..+ .++.++.+...++ ......++|+.+....- ..+++..+.
T Consensus 152 ~~~--~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~ 199 (305)
T TIGR00635 152 IIL--RLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIAN 199 (305)
T ss_pred eEE--EeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHH
Confidence 643 4565555555555 12345677776655443 346776664
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=9.2e-13 Score=136.74 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=115.5
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC---
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF--- 269 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--- 269 (398)
..|.. .++|.+|++++|++.+.+.+...+. . ...+.++||+||||||||++|+++|+.+++
T Consensus 9 ~~la~----kyRP~~f~dliGq~~vv~~L~~ai~---~---------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~ 72 (507)
T PRK06645 9 IPFAR----KYRPSNFAELQGQEVLVKVLSYTIL---N---------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred cchhh----hhCCCCHHHhcCcHHHHHHHHHHHH---c---------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 45654 7899999999999998887765543 1 123568999999999999999999999864
Q ss_pred -------------------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhh
Q 048683 270 -------------------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFI 305 (398)
Q Consensus 270 -------------------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~l 305 (398)
++++++...-.+..+++.++..+... ...+.||..|
T Consensus 73 ~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 73 ITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred cccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH
Confidence 45555554333456676666543211 2234466666
Q ss_pred cCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHH
Q 048683 306 DGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQ 380 (398)
Q Consensus 306 Dgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~ 380 (398)
+.. +..+++|++|+.+++|++++.. |+-+. .+-+++..++..-+ + .++..+++..+..+.. ..++++
T Consensus 153 Eep----p~~~vfI~aTte~~kI~~tI~S--Rc~~~--ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 153 EEP----PPHIIFIFATTEVQKIPATIIS--RCQRY--DLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred hhc----CCCEEEEEEeCChHHhhHHHHh--cceEE--EccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 542 3567888888999999999986 44331 12344455555444 2 2345667666655543 357888
Q ss_pred HHHHHHHHHHH
Q 048683 381 VSLQGLIKFLH 391 (398)
Q Consensus 381 ~al~~l~~~l~ 391 (398)
.|+..|.+++.
T Consensus 225 ~al~~Ldkai~ 235 (507)
T PRK06645 225 DAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHH
Confidence 88877766643
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.1e-13 Score=132.38 Aligned_cols=177 Identities=21% Similarity=0.166 Sum_probs=112.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
..+|.++++++|++++...- ..+...+.. ..-.+++|||||||||||+|++||...+.+|..+++..- +
T Consensus 17 rmRP~~lde~vGQ~HLlg~~-~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-g 85 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEG-KPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-G 85 (436)
T ss_pred HhCCCCHHHhcChHhhhCCC-chHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-c
Confidence 45789999999998775331 222222221 223569999999999999999999999999999987643 4
Q ss_pred hHHHHHHHHcCcccccc-hhhhhhhcCCcccC------------CCCeEEEEec--CCCCCCChhccCCCchhhHhhhhc
Q 048683 282 SSDLQFLLLTMPSRVTL-SGLLNFIDGSWSWC------------GEGRIILFWT--NHKEKLDPALLRPGRMDQRAFNYL 346 (398)
Q Consensus 282 ~~~L~~l~~~~~~~~~l-s~LL~~lDgl~s~~------------~~~vivI~TT--N~~~~LDpAllRpGR~D~l~~~~l 346 (398)
-+++++++..+.+.... ...+-++|.+.... ...+++|++| |.--.|.|||+. |.-... +-
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlS--R~~vf~--lk 161 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLS--RARVFE--LK 161 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhh--hhheee--ee
Confidence 67888888776433211 12334444432211 1335667655 566799999998 554422 44
Q ss_pred CCCChHHHHHH----HhhhcCCC------HHHHHHHHH--ccccHHHHHHHHHHHHHHH
Q 048683 347 GISHHHLYEQM----LIMEMNGT------PAEAAGELA--NSAEAQVSLQGLIKFLHVK 393 (398)
Q Consensus 347 ~~~~~~~~~~i----l~~~~~~t------pa~i~~~l~--~~~d~~~al~~l~~~l~~~ 393 (398)
++.+.++..-+ +.....+. +.+..++|. .++|.+.+|..|.......
T Consensus 162 ~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 162 PLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSA 220 (436)
T ss_pred cCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 55555554444 22222222 355556664 4689999988877665544
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.3e-12 Score=136.96 Aligned_cols=167 Identities=15% Similarity=0.240 Sum_probs=112.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+++.+...+. ....++++||+||||||||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 7899999999999999888776553 1123578999999999999999999998752
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++.+....-++++.+...... + ...+.||..|+.. ++..++
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----p~~tvf 152 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----PKHVVF 152 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC----CCcEEE
Confidence 5666665443344556555432211 1 2234566666664 346788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
|++|+.++.|.+++++ |+..+- +-+++..++...+ + .++..+++..+...+. ..++++.|+..+..
T Consensus 153 IL~Tt~~~KLl~TI~S--Rcq~ie--F~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 153 IFATTEFQKIPLTIIS--RCQRYN--FKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred EEECCChHhhhHHHHh--hhhhcc--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 8888999999999998 766532 4445555555444 2 2345678777665553 35677777766655
No 60
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.41 E-value=2e-12 Score=126.99 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=112.3
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
...|.. .++|.+|++++|+++.++.+...+. . | ..+..+||+||||+|||++++++|++++.++
T Consensus 8 ~~~w~~----kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 8 EFMWEQ----KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCccee----ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 346866 8999999999999999888876664 1 1 2355677899999999999999999999999
Q ss_pred EEeecccccChHHHHHHHH----cC----ccc-------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 272 YHLDLTDIQFSSDLQFLLL----TM----PSR-------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 272 ~~l~~s~~~~~~~L~~l~~----~~----~~~-------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
+.+++++ .....++..+. .. ..+ .....|...++.. ..++.+|+|||.++.++|
T Consensus 72 ~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 72 LFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred eEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEEEcCChhhchH
Confidence 9999887 32232322221 11 111 1111233334443 245678899999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH------------HhhhcCCCHHHHHHHHHc-cccHHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM------------LIMEMNGTPAEAAGELAN-SAEAQVSLQGLIKF 389 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i------------l~~~~~~tpa~i~~~l~~-~~d~~~al~~l~~~ 389 (398)
++.+ |+..+ .++.|+.+.+.++ ..++..++++.+..+.-. .+|...++..+..+
T Consensus 147 ~l~s--R~~~i---~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~ 213 (316)
T PHA02544 147 PLRS--RCRVI---DFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRY 213 (316)
T ss_pred HHHh--hceEE---EeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9998 77652 3556655443322 124556777666655543 35666666555543
No 61
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.5e-12 Score=135.59 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=112.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK------------- 268 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~------------- 268 (398)
.++|.+|++++|++.+++.+.+.+.. ...++.||||||||||||++|+++|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 57899999999999998888777652 12457899999999999999999999875
Q ss_pred -----------CcEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 269 -----------FDIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
.+++.++.+.-.+.+.++++....... ...+.||..++.. +..+++
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep----p~~~if 152 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP----PAHVIF 152 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC----CCCeEE
Confidence 356777765434445566555432211 2345577777654 356788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
|++|+.+++|++++++ |+.++- +-+++..++...+ + ..+..+++..+..+.. ..+++..|+..|...
T Consensus 153 Ilatt~~~ki~~tI~S--Rc~~~~--f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~ 224 (559)
T PRK05563 153 ILATTEPHKIPATILS--RCQRFD--FKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQA 224 (559)
T ss_pred EEEeCChhhCcHHHHh--HheEEe--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888889999999986 655522 3344444444443 2 2344667666554442 346777777666544
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.4e-12 Score=129.16 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=108.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+++.+...+. . ...+..+||+||||||||++|+++|+.+++
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~----~--------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS----L--------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH----c--------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 6789999999999999888766553 1 123567999999999999999999999863
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++.+.-....++++++..... + ...+.||..++.. +..+.+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~----~~~~~f 152 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP----PQHIKF 152 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence 3555554432233445555443211 0 2234566666653 345677
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++|+.++.|.+++.. |+-.+ .+-+++..++..-+ + .++..++++.+..+.. ..+|++.|+..+....
T Consensus 153 Il~t~~~~~l~~tI~S--Rc~~~--~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~ 225 (363)
T PRK14961 153 ILATTDVEKIPKTILS--RCLQF--KLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAI 225 (363)
T ss_pred EEEcCChHhhhHHHHh--hceEE--eCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888889999999886 55331 13334344444333 2 2244577776665553 3578888887776553
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.8e-12 Score=140.07 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=111.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-----------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD----------- 270 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~----------- 270 (398)
.++|.+|++|+|++.+++.|.+.+. . ...+..|||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 6789999999999999888765553 1 1235678999999999999999999998763
Q ss_pred -------------EEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 271 -------------IYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 271 -------------~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
++.++..+-.....++++......+ ...+.||..|+.. +..+++
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP----P~~vrF 152 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP----PEHVKF 152 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc----CCCeEE
Confidence 2344443222334455554322111 3445677777664 345778
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHH-HccccHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGEL-ANSAEAQVSLQGLIK 388 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l-~~~~d~~~al~~l~~ 388 (398)
|++||.+.+|.++++. |+-+ ..+-+++..++...+ + .++..++++.+..+. ...++++.|+.-+-.
T Consensus 153 ILaTTe~~kLl~TIlS--RCq~--f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 153 LLATTDPQKLPVTVLS--RCLQ--FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred EEECCCchhchHHHHH--hheE--EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8889999999999997 6644 234556666666555 2 234567776666544 246788887766543
No 64
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.4e-12 Score=136.32 Aligned_cols=122 Identities=25% Similarity=0.271 Sum_probs=88.1
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCccc-ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHH
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWK-RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQF 287 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~-rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~ 287 (398)
.|..|.+++|+.|.+.+.--...+ ..+ .-++|+||||+|||||+++||+.+|..|+.+++..+.++++++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~--------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK--------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc--------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 467899999999999886332221 112 22679999999999999999999999999999999988887751
Q ss_pred ----HHHcCccc--------ccc--hhhhhhhcCCcccCC------------------------------CCeEEEEecC
Q 048683 288 ----LLLTMPSR--------VTL--SGLLNFIDGSWSWCG------------------------------EGRIILFWTN 323 (398)
Q Consensus 288 ----l~~~~~~~--------~~l--s~LL~~lDgl~s~~~------------------------------~~vivI~TTN 323 (398)
.+..++.+ .+. --||+++|.+.++.. ..|++|+|.|
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 11112222 111 125566665544321 4589999999
Q ss_pred CCCCCChhccCCCchhh
Q 048683 324 HKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 324 ~~~~LDpAllRpGR~D~ 340 (398)
..+.|+.+|+- ||..
T Consensus 475 sl~tIP~PLlD--RMEi 489 (782)
T COG0466 475 SLDTIPAPLLD--RMEV 489 (782)
T ss_pred ccccCChHHhc--ceee
Confidence 99999999998 8887
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.6e-12 Score=133.69 Aligned_cols=170 Identities=18% Similarity=0.277 Sum_probs=113.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++++++.|...+.. ...+..+|||||||||||++|+++|+.+.+
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 67899999999999998888766642 123566899999999999999999998853
Q ss_pred -----------cEEEeecccccChHHHHHHHHcCcc------c-------------ccchhhhhhhcCCcccCCCCeEEE
Q 048683 270 -----------DIYHLDLTDIQFSSDLQFLLLTMPS------R-------------VTLSGLLNFIDGSWSWCGEGRIIL 319 (398)
Q Consensus 270 -----------~~~~l~~s~~~~~~~L~~l~~~~~~------~-------------~~ls~LL~~lDgl~s~~~~~vivI 319 (398)
+++.++.++......++++...... . ..++.|+..++.. ...+++|
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep----~~~t~~I 150 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP----PEHVIFI 150 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC----CCCEEEE
Confidence 3666666543344445554322111 0 2244455555543 3467888
Q ss_pred EecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHH
Q 048683 320 FWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLH 391 (398)
Q Consensus 320 ~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~ 391 (398)
++||.++.+++++.. |+..+ .+-+++..++..-+ + .++..++++.+..+.. ..+|.+.++..|...+.
T Consensus 151 l~t~~~~kl~~~I~S--Rc~~~--~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 151 LATTEPEKMPPTILS--RTQHF--RFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred EEcCChhhCChHHhc--ceEEE--EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 889999999999987 65542 23445555555444 2 2355677776666553 45788888877776543
No 66
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.39 E-value=2.3e-12 Score=141.00 Aligned_cols=136 Identities=22% Similarity=0.211 Sum_probs=89.2
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccCh-------
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFS------- 282 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~------- 282 (398)
+++|.+++|+.|.+.+...... +...+..+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4889999999998876644321 12223469999999999999999999999999999987654322
Q ss_pred --------HHHHHHHHcCccc------------------ccchhhhhhhcCC----ccc-------CCCCeEEEEecCCC
Q 048683 283 --------SDLQFLLLTMPSR------------------VTLSGLLNFIDGS----WSW-------CGEGRIILFWTNHK 325 (398)
Q Consensus 283 --------~~L~~l~~~~~~~------------------~~ls~LL~~lDgl----~s~-------~~~~vivI~TTN~~ 325 (398)
..+.+.|..+... ...+.||..||.. ... .-.++++|+|||.+
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 2333444332211 1123355544420 000 01357899999999
Q ss_pred CCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 326 EKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 326 ~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+.|||+|++ ||+. + .++.++.+...+|
T Consensus 474 ~~i~~~L~~--R~~v-i--~~~~~~~~e~~~I 500 (775)
T TIGR00763 474 DTIPRPLLD--RMEV-I--ELSGYTEEEKLEI 500 (775)
T ss_pred hhCCHHHhC--CeeE-E--ecCCCCHHHHHHH
Confidence 999999999 9975 3 3454555445554
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2.9e-12 Score=135.91 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=113.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.+++
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~----~--------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALD----L--------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 6789999999999999887766554 1 124567999999999999999999999876
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++..+-..-++++++....... ...+.||..|+.. ++.+++
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP----p~~v~F 152 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----PEHVKF 152 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC----CCCeEE
Confidence 45666655322345566555432111 3455677777764 356778
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHH-HccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGEL-ANSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l-~~~~d~~~al~~l~~~l 390 (398)
|++|+.+++|.+.++. |+-. ..+-+++..++...+ + .++..++++.+..+. ...++++.|+.-+-.++
T Consensus 153 IL~Tt~~~kLl~TI~S--RC~~--~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqai 225 (647)
T PRK07994 153 LLATTDPQKLPVTILS--RCLQ--FHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAI 225 (647)
T ss_pred EEecCCccccchHHHh--hheE--eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999997 6544 224445555554444 2 234566766665444 34577887777664433
No 68
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.8e-12 Score=134.80 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=113.0
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|++++++.+...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 367899999999999999888776641 134678999999999999999999999864
Q ss_pred -------------cEEEeecccccChHHHHHHHHcC---cc----c------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTM---PS----R------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~---~~----~------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++.......++++++.... +. + ...+.||..|+.. ++.++
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep----p~~~~ 151 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP----PPHVK 151 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC----CCCeE
Confidence 25556544333344555554322 11 1 2345577777764 35678
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
+|++||.+++|.++++. |+..+- |-.++..++...+ + .++..++++.+..+.. ..+|.+.++..|.+.
T Consensus 152 fIl~t~~~~kl~~tI~S--Rc~~~~--f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 152 FIFATTEPHKVPITILS--RCQRFD--FRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred EEEEeCChhhhhHHHHH--hhhhhh--cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88999999999999996 555422 4455555555444 2 2345677776665543 346777777666444
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=3.9e-12 Score=134.81 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=114.5
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|.+.+++.|...+.. ...+++|||+||||||||++|+++|+.+++
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 368899999999999999888776651 134578999999999999999999998754
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++...-...+.+++++..... + ...+.||..|+.. .+.++
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP----p~~v~ 151 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVK 151 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC----CCCcE
Confidence 3455554443344566666643211 1 2234566666653 34578
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+|++||.+.++.+.++. |+-.+ .+-.+...++...+ + .++..++++.+..+.- ..++.+.++..|.+.+
T Consensus 152 fILaTtd~~kL~~TIrS--RC~~f--~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 152 FILATTDPHKVPVTVLS--RCLQF--VLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred EEEEeCCccccchHHHH--HHhhh--hcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88899999999999885 66442 23345555555544 2 2355677777666553 3578887777765544
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5.6e-12 Score=132.12 Aligned_cols=169 Identities=16% Similarity=0.187 Sum_probs=111.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 67899999999999999887766541 123567999999999999999999999865
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++.+.-...+++++++...... ...+.||..|+.. ++.+++
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep----p~~~~f 152 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKF 152 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC----CCCEEE
Confidence 35556554333445566655432111 2345577777664 356788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++||.++.+.+.++. |+-.+ .+-.++..++...+ + .++..++++.+..+.. ..++.+.|+..+.+++
T Consensus 153 IL~t~d~~kil~tI~S--Rc~~~--~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 153 ILATTDPQKIPVTVLS--RCLQF--NLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EEEeCChhhCchhHHH--HHHHH--hcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888889999988876 65442 24444455554444 2 2345667766555442 3567777777665443
No 71
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=3.3e-12 Score=136.36 Aligned_cols=167 Identities=18% Similarity=0.240 Sum_probs=108.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.+...+.. ...++.||||||||||||++|+++|+.+.+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 78999999999999998888777651 134678999999999999999999998754
Q ss_pred ---------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEe
Q 048683 270 ---------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFW 321 (398)
Q Consensus 270 ---------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~T 321 (398)
+++.++...-.+...++++....... ...+.||..|+.. ++.+++|++
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP----P~~tifILa 154 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP----PKHVIFILA 154 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC----CCceEEEEE
Confidence 23344432212234455554332211 2345677777764 356788888
Q ss_pred cCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 322 TNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 322 TN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
|+.++.|+++++. |+.++- +-+++..++...+ + .++..++++.+..+.. ..++.+.|+..+..
T Consensus 155 Tte~~KLl~TI~S--Rcq~ie--F~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 155 TTEVHKIPLTILS--RVQRFN--FRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred cCChhhhhHHHHh--hceeEE--ccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999987 665422 4455555555444 1 2344566655544332 34666666655443
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=4.8e-12 Score=133.90 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=110.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+++.|.+.+. . ...+..|||+||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~--------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----Q--------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 7889999999999988887766554 1 123567999999999999999999999864
Q ss_pred -----------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCC
Q 048683 270 -----------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCG 313 (398)
Q Consensus 270 -----------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~ 313 (398)
+++.++..+-..-+++++++...... ...+.||..|+.. +
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP----P 152 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP----P 152 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC----C
Confidence 45666654433445666666542111 2344566666653 3
Q ss_pred CCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 314 EGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 314 ~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
+.+++|++|+.+++|.+.++. |+..+- +-.++..++...+ ..++..++++.+..+.. ..++.+.++..+.+
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlS--Rc~~~~--f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq 228 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLS--RCLQFN--LRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQ 228 (618)
T ss_pred CCeEEEEEECCchhhhHHHHH--hceeee--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567788888889999999886 654422 3345555554444 23455667665554442 35677777766543
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=4e-12 Score=133.96 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=108.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.+++
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~--------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----A--------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 6889999999999998888776664 1 124567999999999999999999998763
Q ss_pred --------------cEEEeecccccChHHHHHHHHcC---c---c-c------------ccchhhhhhhcCCcccCCCCe
Q 048683 270 --------------DIYHLDLTDIQFSSDLQFLLLTM---P---S-R------------VTLSGLLNFIDGSWSWCGEGR 316 (398)
Q Consensus 270 --------------~~~~l~~s~~~~~~~L~~l~~~~---~---~-~------------~~ls~LL~~lDgl~s~~~~~v 316 (398)
+++.++.+...+-++++++.... + . + ...+.||..|+.. ++.+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp----p~~~ 149 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP----PEHL 149 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC----CCCe
Confidence 45566654433445555443221 1 0 1 3455677777764 3567
Q ss_pred EEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 317 ivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
++|++|+.+++|.++++. |+.++- |-.++..++...+ + .++..++++.+..+.. ..+|++.++..|.+.
T Consensus 150 ~fIL~tte~~kll~TI~S--Rc~~~~--F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRS--RTHHYP--FRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred EEEEEeCChHhhHHHHHH--hceEEE--eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888888999999999986 543321 3344444444333 2 2345566665544433 346677666665544
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.36 E-value=8.2e-12 Score=119.73 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=89.2
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcc---cccceeeCCCCCCchHHHHHHHHhc-------CCcEEEeecc
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVW---KRGYLLFGPPGTGKSNLIASMANHL-------KFDIYHLDLT 277 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GPPGTGKT~la~aiA~~l-------~~~~~~l~~s 277 (398)
+++++|.+++|+.|.+.+.+.... ....+.|... ..++||+||||||||++|+++|+++ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999998887655443 3334456543 2458999999999999999999875 2367777766
Q ss_pred ccc------ChHHHHHHHHcCccc--------------------ccchhhhhhhcCCcccCCCCeEEEEecCCC-----C
Q 048683 278 DIQ------FSSDLQFLLLTMPSR--------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK-----E 326 (398)
Q Consensus 278 ~~~------~~~~L~~l~~~~~~~--------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~-----~ 326 (398)
++. ....+..+|..+... ..+..|+..++.. ...+++|++++.. .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFL 159 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHH
Confidence 553 134455566544322 1233355555443 2345566655432 2
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.++|+|.+ ||+..+ .++..+.+...+|
T Consensus 160 ~~~p~L~s--Rf~~~i--~f~~~~~~el~~I 186 (261)
T TIGR02881 160 SLNPGLRS--RFPISI--DFPDYTVEELMEI 186 (261)
T ss_pred hcChHHHh--ccceEE--EECCCCHHHHHHH
Confidence 47899998 997744 4554455555555
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.35 E-value=5.3e-12 Score=125.68 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=107.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK------------- 268 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~------------- 268 (398)
.+.|.+|++++|.+.+++.+.+.+.. ...++.+|||||||+|||++|+++|+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 78899999999999999888776641 12356799999999999999999998874
Q ss_pred -----------CcEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 269 -----------FDIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
.+++.++.........+++++..+... ...+.|+..++.. +..+++
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~----~~~~~l 150 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP----PEHVVF 150 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC----ccceeE
Confidence 235555554333334455554432111 2234466666553 356788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
|++||.++.+.+++.+ |+..+- +-+++..++..-+ + ..+..++++.++..+. ..+|+..+++.+.+.
T Consensus 151 Il~~~~~~~l~~~l~s--r~~~~~--~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl 222 (355)
T TIGR02397 151 ILATTEPHKIPATILS--RCQRFD--FKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQL 222 (355)
T ss_pred EEEeCCHHHHHHHHHh--heeEEE--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 8889999999999987 665422 2233333433333 1 2344577766655553 346777777666543
No 76
>CHL00181 cbbX CbbX; Provisional
Probab=99.35 E-value=9.6e-12 Score=120.92 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=99.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccc-c--ceeeCCCCCCchHHHHHHHHhcC-------CcEEEeeccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKR-G--YLLFGPPGTGKSNLIASMANHLK-------FDIYHLDLTD 278 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~r-g--iLL~GPPGTGKT~la~aiA~~l~-------~~~~~l~~s~ 278 (398)
++++|.+++|++|.+.+.. +..++.+.+.|...++ | +||+||||||||++|+++|+.+. -+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999887754 4445667778876543 4 79999999999999999999762 2578877665
Q ss_pred cc------ChHHHHHHHHcCccc---------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC-----
Q 048683 279 IQ------FSSDLQFLLLTMPSR---------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE----- 326 (398)
Q Consensus 279 ~~------~~~~L~~l~~~~~~~---------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~----- 326 (398)
+. +......++..+... .....|+..||.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence 42 223334444432221 2233455555542 24567777775322
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH---Hh--hhcCCCHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM---LI--MEMNGTPAEAAG 371 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~--~~~~~tpa~i~~ 371 (398)
.++|+|.| ||+..+ +++..+.+...+| .. ....+++.....
T Consensus 178 ~~np~L~s--R~~~~i--~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~ 223 (287)
T CHL00181 178 ESNPGLSS--RIANHV--DFPDYTPEELLQIAKIMLEEQQYQLTPEAEKA 223 (287)
T ss_pred hcCHHHHH--hCCceE--EcCCcCHHHHHHHHHHHHHHhcCCCChhHHHH
Confidence 34699999 999866 6666666556666 22 234567665543
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.1e-12 Score=131.53 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=110.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+++.+...+. . ...+..+||+||||||||++|+++|+.+++
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~----~--------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE----T--------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 6789999999999999888766554 1 123567999999999999999999998764
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCcc------c-------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPS------R-------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~------~-------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++...-...+++++++..... . ...+.||..|+.. ++.+++
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep----p~~v~f 152 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP----PEYVKF 152 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC----CCCceE
Confidence 5666665332333444444432211 1 2345577777764 345677
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++|+.+..+.++++. |+..+- +-+++..++...+ + .++..++++.+..+.. ..+|.+.++..+..++
T Consensus 153 IL~Ttd~~kil~tI~S--Rc~~~~--f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILS--RCIQLH--LKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHH--heeeEE--eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777789999989886 654422 3344455554444 2 2355677776666553 3577887777765543
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.9e-12 Score=132.17 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=111.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-----------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD----------- 270 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~----------- 270 (398)
.++|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~--------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----E--------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 7899999999999999887766654 1 1234679999999999999999999998752
Q ss_pred -------------EEEeecccccChHHHHHHH---HcCc---c-c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 271 -------------IYHLDLTDIQFSSDLQFLL---LTMP---S-R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 271 -------------~~~l~~s~~~~~~~L~~l~---~~~~---~-~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
++.++...-...+.++.+. ...+ . + ...+.||..|+.. ...+++
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP----~~~~if 152 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP----PARVTF 152 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----CCCEEE
Confidence 5666543222233444432 1111 0 1 2245577777663 246788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++||.++.|.+.+++ |+..+- +-.++..++...+ + .++..++++.+..+.. ..+|.+.|+..|.+.+
T Consensus 153 ILaTt~~~kll~TI~S--Rcq~i~--F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVS--RCQHFT--FTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHh--hhhccc--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999887 765532 4445555554443 2 2345577776655443 4577888877765543
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=9.6e-12 Score=126.32 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=107.9
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|++.+++.+...+. . ...+..+|||||||||||++|+++|+.+.+
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~----~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR----M--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH----h--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 36789999999999999887766554 1 124567999999999999999999999865
Q ss_pred ---------------------cEEEeecccccChHHHHHHHHcCc------c-c------------ccchhhhhhhcCCc
Q 048683 270 ---------------------DIYHLDLTDIQFSSDLQFLLLTMP------S-R------------VTLSGLLNFIDGSW 309 (398)
Q Consensus 270 ---------------------~~~~l~~s~~~~~~~L~~l~~~~~------~-~------------~~ls~LL~~lDgl~ 309 (398)
+++.++.......++++++..... . + ...+.|+..++..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep- 154 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP- 154 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-
Confidence 233444333223455555443331 1 1 1233456666543
Q ss_pred ccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHH
Q 048683 310 SWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQ 384 (398)
Q Consensus 310 s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~ 384 (398)
++..++|++|+.+..|-+++.. |+..+- +-+++..++..-+ + .++..++++.+..+.. ..+|.+.++.
T Consensus 155 ---~~~t~~Il~t~~~~kl~~tl~s--R~~~v~--f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 155 ---PPHAIFIFATTELHKIPATIAS--RCQRFN--FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred ---CCCeEEEEEeCChHHhHHHHHH--HHHHhh--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3456777777888899999887 665422 4455555655544 2 2345677777666553 3567777766
Q ss_pred HHHH
Q 048683 385 GLIK 388 (398)
Q Consensus 385 ~l~~ 388 (398)
.+.+
T Consensus 228 ~L~k 231 (397)
T PRK14955 228 ILDQ 231 (397)
T ss_pred HHHH
Confidence 6544
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=6.3e-12 Score=127.10 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=106.9
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc----------------
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD---------------- 270 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~---------------- 270 (398)
.|++|+|++.+++.+...+..... .+...+.+.+++|||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999888864433 2334455678899999999999999999999977543
Q ss_pred -------EEEeecccc-cChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEecC
Q 048683 271 -------IYHLDLTDI-QFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTN 323 (398)
Q Consensus 271 -------~~~l~~s~~-~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN 323 (398)
++.+..... ..-.++++++..+... ...+.||..|+.. +.++++|++|+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep----~~~~~fIL~a~ 155 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP----PPRTVWLLCAP 155 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC----CCCCeEEEEEC
Confidence 233332211 2334566655432211 2345678877764 24566777777
Q ss_pred CCCCCChhccCCCchhhHhhhhcCCCChHHHHHHHhhhcCCCHHHHHHHH-HccccHHHHHH
Q 048683 324 HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGEL-ANSAEAQVSLQ 384 (398)
Q Consensus 324 ~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~~~~~tpa~i~~~l-~~~~d~~~al~ 384 (398)
.++.|+|++++ |+-. + +++.|+.+...+.+.....++++...... +..+++..|++
T Consensus 156 ~~~~llpTIrS--Rc~~-i--~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 156 SPEDVLPTIRS--RCRH-V--ALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRARR 212 (394)
T ss_pred ChHHChHHHHh--hCeE-E--ECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHH
Confidence 79999999998 6643 2 56777666555555544456665543333 23455655543
No 81
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.8e-11 Score=122.85 Aligned_cols=168 Identities=16% Similarity=0.257 Sum_probs=107.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++..++.+.+.+.. ...+.++|||||||+|||++|+++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 78999999999999988877766641 124578999999999999999999998743
Q ss_pred cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 270 DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 270 ~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
++++++.........+++++..+.. + ...+.|+..++.. +...++|++||.+..+.|
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP----PAHAIFILATTEKHKIIP 153 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC----CCceEEEEEeCCcccCCH
Confidence 3444443333334566666543211 1 1234455555542 345677888888999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHHc-cccHHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELAN-SAEAQVSLQGLIKF 389 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~~-~~d~~~al~~l~~~ 389 (398)
++.+ |+..+ .+-++...++..-+ ...+..++++.+..+... .+|...++..+.+.
T Consensus 154 ~l~s--r~~~v--~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 154 TILS--RCQIF--DFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred HHHh--cceeE--ecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9987 44331 12233334444333 233456777666665543 46777777766544
No 82
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=8.6e-12 Score=136.08 Aligned_cols=168 Identities=18% Similarity=0.195 Sum_probs=107.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.|...+. . ......||||||+|||||++|+++|+.+++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~----~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD----S--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 7899999999999999888776654 1 123467999999999999999999999863
Q ss_pred --------------cEEEeecccccChHHHHHHHHcCc-----cc--------------ccchhhhhhhcCCcccCCCCe
Q 048683 270 --------------DIYHLDLTDIQFSSDLQFLLLTMP-----SR--------------VTLSGLLNFIDGSWSWCGEGR 316 (398)
Q Consensus 270 --------------~~~~l~~s~~~~~~~L~~l~~~~~-----~~--------------~~ls~LL~~lDgl~s~~~~~v 316 (398)
+++.++......-++++++..... .+ ...+.||+.|+.. .+.+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp----P~~~ 151 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP----PEHL 151 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----CCCe
Confidence 355666544334455555432111 11 3345577877775 3567
Q ss_pred EEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 317 ivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
++|++||.+++|-++|+. |+-.+- |-.++...+..-+ + .++..+.++.+..++. ..+|...++..|.+.
T Consensus 152 ~fIl~tt~~~kLl~TIrS--Rc~~v~--F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRS--RTHHYP--FRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred EEEEEeCChhhhhHHHHh--heeEEE--eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888888999999999886 544422 2233344443333 1 2344556665554432 245666666555443
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.3e-11 Score=128.57 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=115.1
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC------------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK------------ 268 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~------------ 268 (398)
..++|.+|++++|++.+++.+...+. . ...+..||||||||||||++|+++|+.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~----~--------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALD----N--------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 37899999999999999888876664 1 13467799999999999999999999873
Q ss_pred ------------CcEEEeecccccChHHHHHHHHcC---cc---c-------------ccchhhhhhhcCCcccCCCCeE
Q 048683 269 ------------FDIYHLDLTDIQFSSDLQFLLLTM---PS---R-------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 269 ------------~~~~~l~~s~~~~~~~L~~l~~~~---~~---~-------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
.+++.++.++-..-+.+++++... +. . ...+.||..|+.. +..+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp----p~~t~ 149 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP----PSYVK 149 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc----CCceE
Confidence 246666654323345677666431 11 1 3345577777764 24567
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+|++|+.+.+|.|+++. |+.++ .+-+++..++...+ -.++..++++.+..+.. ..+|.+.++..+.+++
T Consensus 150 FIL~ttd~~kL~~tI~S--Rc~~~--~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai 223 (535)
T PRK08451 150 FILATTDPLKLPATILS--RTQHF--RFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAI 223 (535)
T ss_pred EEEEECChhhCchHHHh--hceeE--EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 78888889999999997 65442 24455555555554 23445677776665553 3477777777765544
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.31 E-value=1.7e-11 Score=119.12 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=99.8
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcc---cccceeeCCCCCCchHHHHHHHHhcC-------CcEEEeecccc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVW---KRGYLLFGPPGTGKSNLIASMANHLK-------FDIYHLDLTDI 279 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GPPGTGKT~la~aiA~~l~-------~~~~~l~~s~~ 279 (398)
+++|.+++|++|.+.+.. +..++...+.|.+. ..++||+||||||||++|+++|..+. -+++.++.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999887765 66677777888764 34799999999999999999998773 26888876554
Q ss_pred c------ChHHHHHHHHcCccc---------------------ccchhhhhhhcCCcccCCCCeEEEEecCC--CC---C
Q 048683 280 Q------FSSDLQFLLLTMPSR---------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH--KE---K 327 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~---------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~--~~---~ 327 (398)
. +...+..+|..+... .....|+..|+.. ..+++||++++. .+ .
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~ 177 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFE 177 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHh
Confidence 2 223444555443221 1234456666542 245677777653 33 3
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH----Hhh-hcCCCHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIM-EMNGTPAEAA 370 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~-~~~~tpa~i~ 370 (398)
++|+|.+ ||+..+ .++..+.+-..+| +.. ...+++..+.
T Consensus 178 ~np~L~s--R~~~~i--~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~ 221 (284)
T TIGR02880 178 SNPGFSS--RVAHHV--DFPDYSEAELLVIAGLMLKEQQYRFSAEAEE 221 (284)
T ss_pred hCHHHHh--hCCcEE--EeCCcCHHHHHHHHHHHHHHhccccCHHHHH
Confidence 5899999 999855 5555555555555 222 2356665443
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.2e-11 Score=125.38 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=107.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.+...+.. ...+..+|||||||||||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 67899999999999998877766641 134578999999999999999999998743
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCc------cc-------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMP------SR-------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~------~~-------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++.....+.+.++++..... .. ...+.|+..|+.. ++.++
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep----~~~~~ 153 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP----PQHVK 153 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----CCCce
Confidence 355555433222344443322111 11 2234466666663 34677
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
+|++||.+++|.+++.. |+..+- +-.++..++..-+ . .++..++++.+..+.. ..+|.+.++..+..
T Consensus 154 ~Il~t~~~~kl~~tI~s--Rc~~v~--f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 154 FFLATTEIHKIPGTILS--RCQKMH--LKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEEEeCChHhcchHHHH--hceEEe--CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88888999999999997 665522 3344455555444 1 1244576666655553 34677777766554
No 86
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2.3e-11 Score=128.84 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=109.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-----------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD----------- 270 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~----------- 270 (398)
.+.|.+|++|+|++.+++.|.+.+. . -..+.++||+||||||||++|+++|+.+++.
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~---~---------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE---T---------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH---c---------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 7899999999999999988876654 1 1246689999999999999999999988643
Q ss_pred ------------------EEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCC
Q 048683 271 ------------------IYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCG 313 (398)
Q Consensus 271 ------------------~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~ 313 (398)
++.++......-.++++++...... ...+.||..|+.. +
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP----p 160 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP----P 160 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC----C
Confidence 3344433333345666665432111 2244566666654 3
Q ss_pred CCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 314 EGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 314 ~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
+.+++|++|+.++++.+.++. |+.++- +-.++..++..-+ -.++..++++.+..++. ..++...++..+.+
T Consensus 161 ~~~~fIl~tte~~kll~tI~S--Rcq~~~--f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldk 236 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLS--RCQRFD--LRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQ 236 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHh--heeEEE--ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567888888999999999885 554321 2334444444333 22455677766655553 34677777776655
Q ss_pred H
Q 048683 389 F 389 (398)
Q Consensus 389 ~ 389 (398)
.
T Consensus 237 l 237 (598)
T PRK09111 237 A 237 (598)
T ss_pred H
Confidence 4
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2.5e-11 Score=127.93 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=107.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.+...+. . ...++.||||||||+|||++|+++|+.+++
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~----~--------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE----S--------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 6789999999999999988877664 1 124567999999999999999999999864
Q ss_pred ------------cEEEeecccccChHHHHHHHHc---Cc---c-c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLT---MP---S-R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~---~~---~-~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++...-..-++++++... .+ . + ...+.||..++.. +..+++
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep----p~~~vf 152 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP----PPYIVF 152 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC----CCCEEE
Confidence 3455544322223455554421 11 1 1 2345577776653 456788
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
|++|+.+++|.+++.. |+..+- +-.++..++...+ ...+..++++.+..+.. ..+|.+.++..+.+
T Consensus 153 I~~tte~~kL~~tI~S--Rc~~~~--f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdk 223 (563)
T PRK06647 153 IFATTEVHKLPATIKS--RCQHFN--FRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQ 223 (563)
T ss_pred EEecCChHHhHHHHHH--hceEEE--ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8888889999999987 655422 3445555554333 22345666766655443 24566666665543
No 88
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.7e-11 Score=128.99 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=108.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|.+++++.|...+.. .....++|||||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 78899999999999998888766641 112457999999999999999999999865
Q ss_pred --------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCe
Q 048683 270 --------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGR 316 (398)
Q Consensus 270 --------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~v 316 (398)
+++.++.......+.+++++..+... ...+.||..|+.. ...+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP----p~~t 152 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP----PPRV 152 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC----CcCe
Confidence 35555544333445666665433211 2345577777753 3567
Q ss_pred EEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHH
Q 048683 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLI 387 (398)
Q Consensus 317 ivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~ 387 (398)
++|++|+.++.|-|+++. |+.++- |-.++..++...+ . .++..+++..+..+.. ..++...|+..+.
T Consensus 153 vfIL~t~~~~~llpTIrS--Rc~~~~--f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 153 VFVLATTDPQRVLPTIIS--RCQRFD--FRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred EEEEEeCChhhhhHHHHh--heeEEE--ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888888889999999986 555422 2344444444433 1 2345677766554432 3466666665544
No 89
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.6e-11 Score=128.63 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=107.3
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------- 269 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------- 269 (398)
..++|.+|++|+|++.+++.+...+. ....+.+|||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 36789999999999999888766543 1234678999999999999999999999866
Q ss_pred ---------------------cEEEeecccccChHHHHHHHHcCc------c-c------------ccchhhhhhhcCCc
Q 048683 270 ---------------------DIYHLDLTDIQFSSDLQFLLLTMP------S-R------------VTLSGLLNFIDGSW 309 (398)
Q Consensus 270 ---------------------~~~~l~~s~~~~~~~L~~l~~~~~------~-~------------~~ls~LL~~lDgl~ 309 (398)
+++.++.......++++++..... . + ...+.||..|+...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp 155 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP 155 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC
Confidence 233333322223455665543331 1 1 12344666666642
Q ss_pred ccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHH
Q 048683 310 SWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQ 384 (398)
Q Consensus 310 s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~ 384 (398)
+..++|++|+.+++|-+++.. |...+- +-.++..++...+ + .++..++++.+..+.. .++|.+.++.
T Consensus 156 ----~~tv~IL~t~~~~kLl~TI~S--Rc~~ve--f~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 156 ----PHAIFIFATTELHKIPATIAS--RCQRFN--FKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred ----CCeEEEEEeCChhhhhHHHHh--hceEEe--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 456777777888999999987 544422 3444455554444 2 2245577777666553 3567777766
Q ss_pred HHHH
Q 048683 385 GLIK 388 (398)
Q Consensus 385 ~l~~ 388 (398)
.+.+
T Consensus 228 eLeK 231 (620)
T PRK14954 228 ILDQ 231 (620)
T ss_pred HHHH
Confidence 5543
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.1e-11 Score=126.46 Aligned_cols=168 Identities=15% Similarity=0.228 Sum_probs=104.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++++|++.+.+.+...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 78999999999999999888766641 124567999999999999999999998763
Q ss_pred ------------cEEEeecccccChHHHHHHHHc---Ccc----c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLT---MPS----R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~---~~~----~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++.+.-...+.++.+... .+- + ...+.||..++.. +..+++
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep----p~~~v~ 152 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP----PPRTIF 152 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence 3455554332233334443322 111 0 2234566666654 345677
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
|++|+.++.|++++.+ |+..+- +-+++..++..-+ + ..+..+++..+..+.. ..++.+.++..+...
T Consensus 153 Il~tt~~~kl~~tI~S--Rc~~i~--f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl 224 (486)
T PRK14953 153 ILCTTEYDKIPPTILS--RCQRFI--FSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQA 224 (486)
T ss_pred EEEECCHHHHHHHHHH--hceEEE--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7778888999999887 554422 3334444444433 1 2244566665554432 346677666666544
No 91
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.9e-11 Score=126.02 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=83.6
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHH--
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQ-- 286 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~-- 286 (398)
+|..|.+++|+.|.+.+.--.- .|....+-++|+||||+|||+++++||..+|..|+.++...+.+.++++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5678999999999887752211 1222233478999999999999999999999999999988776555543
Q ss_pred -------------HHHHcCcccccchhhhhhhcCCcccC------------------------------CCCeEEEEecC
Q 048683 287 -------------FLLLTMPSRVTLSGLLNFIDGSWSWC------------------------------GEGRIILFWTN 323 (398)
Q Consensus 287 -------------~l~~~~~~~~~ls~LL~~lDgl~s~~------------------------------~~~vivI~TTN 323 (398)
+.+...... .---|++++|.+.+.. -..|++|+|.|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~-NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTE-NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCC-CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 222211110 0011344444333211 04579999999
Q ss_pred CCCCCChhccCCCchhh
Q 048683 324 HKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 324 ~~~~LDpAllRpGR~D~ 340 (398)
..+.|+|+|+. ||.+
T Consensus 563 ~idtIP~pLlD--RMEv 577 (906)
T KOG2004|consen 563 VIDTIPPPLLD--RMEV 577 (906)
T ss_pred ccccCChhhhh--hhhe
Confidence 99999999998 8887
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=7.1e-11 Score=111.96 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=111.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
..+|.+|++.+|++++|+.+.-.+.....+.+. .-.+|||||||.|||+||..+|+++|.++-..+...+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~--------lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEA--------LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCC--------cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 457899999999999999987777655554433 345999999999999999999999999999999999988
Q ss_pred hHHHHHHHHcCccccc------------chh-hhhhhcCC--------cccCC------CCeEEEEecCCCCCCChhccC
Q 048683 282 SSDLQFLLLTMPSRVT------------LSG-LLNFIDGS--------WSWCG------EGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 282 ~~~L~~l~~~~~~~~~------------ls~-LL~~lDgl--------~s~~~------~~vivI~TTN~~~~LDpAllR 334 (398)
..+|..++.......+ +.. |--.|+.+ .+... ...-+|++|.+...|..-|.-
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence 8999888877655411 111 11222211 11000 234688999999999988887
Q ss_pred CCchhhHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHHc-cccHHHHH
Q 048683 335 PGRMDQRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELAN-SAEAQVSL 383 (398)
Q Consensus 335 pGR~D~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~~-~~d~~~al 383 (398)
||.... -+..-..+...+| ..-+.++++....+.-.+ ++.|+.|.
T Consensus 171 --RFGi~~--rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 171 --RFGIIQ--RLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred --hcCCee--eeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHH
Confidence 777633 1222233333444 223344555444444333 25555543
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=8.9e-11 Score=124.98 Aligned_cols=168 Identities=16% Similarity=0.241 Sum_probs=114.1
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC------------
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK------------ 268 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~------------ 268 (398)
..++|.+|++|+|++.+++.+...+. ....+..||||||+|+|||++|+++|+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIA------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 47899999999999999988877764 113467799999999999999999999875
Q ss_pred -------------CcEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCe
Q 048683 269 -------------FDIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGR 316 (398)
Q Consensus 269 -------------~~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~v 316 (398)
.+++.++..+..+..+++.++..+.. + ...+.||..|+.. ++..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep----p~~t 152 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP----PSYA 152 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC----CCCe
Confidence 45666766544445567666633211 1 2344577777764 3456
Q ss_pred EEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 317 IILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 317 ivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
++|++|+.+.+|-++|+. |+..+- +-+++..++...+ -.++..++++.+..+.. ..+|.+.++..+.+
T Consensus 153 ifIL~tt~~~kIl~tI~S--Rc~iv~--f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lek 225 (614)
T PRK14971 153 IFILATTEKHKILPTILS--RCQIFD--FNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQ 225 (614)
T ss_pred EEEEEeCCchhchHHHHh--hhheee--cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 788888888999999997 665532 4455555555444 23345667766655543 34677777666543
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.24 E-value=5.5e-11 Score=121.38 Aligned_cols=163 Identities=20% Similarity=0.172 Sum_probs=100.4
Q ss_pred ccCCCCccccccChHHHHH---HHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 202 LQHAMTFKDLALDSELKKM---IIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~---l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
..+|.+|++++|.+++.+. +...+. . ....++||+||||||||++|+++|+.++.+++.++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 6789999999999887554 544442 1 12347999999999999999999999999999998765
Q ss_pred ccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEec--CCCCCCChhccCCCc
Q 048683 279 IQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWT--NHKEKLDPALLRPGR 337 (398)
Q Consensus 279 ~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TT--N~~~~LDpAllRpGR 337 (398)
. ....++.++...... .....|+..++. ..+++|++| |....++++|++ |
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R 142 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--R 142 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--c
Confidence 4 344555555443211 011223333322 345566554 445689999998 7
Q ss_pred hhhHhhhhcCCCChHHHHHH----Hhh---hc-CCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 338 MDQRAFNYLGISHHHLYEQM----LIM---EM-NGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 338 ~D~l~~~~l~~~~~~~~~~i----l~~---~~-~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
+..+ .+..++.+...++ +.. .. .+++..+..++. ..+|+..++..+...
T Consensus 143 ~~~~---~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 143 AQVF---ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ceee---EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7442 2333333333333 111 12 566665554443 357888777666554
No 95
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=7.1e-11 Score=125.54 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=106.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.++|.+|++|+|++.+++.|...+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 68999999999999999888666541 123456899999999999999999998752
Q ss_pred -------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeE
Q 048683 270 -------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRI 317 (398)
Q Consensus 270 -------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vi 317 (398)
+++.++.+.....++++++...... + ...+.||..|+.. ....+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep----p~~tv 152 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP----PPHAI 152 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC----CCCeE
Confidence 3455555433344555554432111 1 2244566666654 24567
Q ss_pred EEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 318 ILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 318 vI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
+|++|+.++.+.+.+.. |+.++- +-.++..++...+ -..+..++++.+..+.. ..+|...++..|.+.
T Consensus 153 ~Il~t~~~~kll~tI~S--R~~~i~--f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 153 FILATTEVHKVPATILS--RCQRFD--FHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred EEEEeCChhhhhHHHHh--ccceee--CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88888888889998876 555422 2233344444333 12344577766655442 346777776666543
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=8.6e-11 Score=115.97 Aligned_cols=171 Identities=13% Similarity=0.164 Sum_probs=99.4
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-----
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK----- 268 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~----- 268 (398)
.|.. .+.|.+|++++|.+++++.+...+. .+ ...++|||||||||||++|+++|+++.
T Consensus 4 ~w~~----ky~P~~~~~~~g~~~~~~~L~~~~~----~~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~ 66 (337)
T PRK12402 4 LWTE----KYRPALLEDILGQDEVVERLSRAVD----SP---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred chHH----hhCCCcHHHhcCCHHHHHHHHHHHh----CC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccc
Confidence 5755 8899999999999988887766553 11 112699999999999999999999984
Q ss_pred CcEEEeecccccC--------------------------hHHHHHHHHcC-------c-cc------------ccchhhh
Q 048683 269 FDIYHLDLTDIQF--------------------------SSDLQFLLLTM-------P-SR------------VTLSGLL 302 (398)
Q Consensus 269 ~~~~~l~~s~~~~--------------------------~~~L~~l~~~~-------~-~~------------~~ls~LL 302 (398)
.+++.++++++.. ...++.++... . .+ .....|+
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~ 146 (337)
T PRK12402 67 NNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALR 146 (337)
T ss_pred cceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHH
Confidence 3456777655320 01122221111 0 01 1112233
Q ss_pred hhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHH-cc
Q 048683 303 NFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELA-NS 376 (398)
Q Consensus 303 ~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~-~~ 376 (398)
..++.. .....+|+|||.+..+.++|.. |+..+ .+..++.+...++ -..+..++++.++.+.. ..
T Consensus 147 ~~le~~----~~~~~~Il~~~~~~~~~~~L~s--r~~~v---~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 147 RIMEQY----SRTCRFIIATRQPSKLIPPIRS--RCLPL---FFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHhc----cCCCeEEEEeCChhhCchhhcC--CceEE---EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 333332 2334566777777888888876 54332 2333333333333 12344566666665553 34
Q ss_pred ccHHHHHHHHHHHH
Q 048683 377 AEAQVSLQGLIKFL 390 (398)
Q Consensus 377 ~d~~~al~~l~~~l 390 (398)
+|.+.++..+..+.
T Consensus 218 gdlr~l~~~l~~~~ 231 (337)
T PRK12402 218 GDLRKAILTLQTAA 231 (337)
T ss_pred CCHHHHHHHHHHHH
Confidence 67777776665543
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.22 E-value=1.4e-10 Score=113.46 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---- 268 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---- 268 (398)
..|.. .+.|.+|++++|.+++++.+...+. .. . ...+|||||||||||++++++++++.
T Consensus 5 ~~w~~----kyrP~~~~~~~g~~~~~~~l~~~i~----~~-------~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~ 67 (319)
T PRK00440 5 EIWVE----KYRPRTLDEIVGQEEIVERLKSYVK----EK-------N--MPHLLFAGPPGTGKTTAALALARELYGEDW 67 (319)
T ss_pred Cccch----hhCCCcHHHhcCcHHHHHHHHHHHh----CC-------C--CCeEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 35865 8999999999999988887776653 11 1 12489999999999999999999873
Q ss_pred -CcEEEeecccccChHHHHHHH----HcC-----ccc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 269 -FDIYHLDLTDIQFSSDLQFLL----LTM-----PSR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 269 -~~~~~l~~s~~~~~~~L~~l~----~~~-----~~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
.+++.++.++-.....+.+.+ ... ..+ .....|+..++.. .....+|+++|.+.
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~----~~~~~lIl~~~~~~ 143 (319)
T PRK00440 68 RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY----SQNTRFILSCNYSS 143 (319)
T ss_pred ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC----CCCCeEEEEeCCcc
Confidence 345566544433222222222 111 011 1112244444432 23456778888888
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLH 391 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~ 391 (398)
.+.+++.+ |+..+ .+-+++..++..-+ -..+..++++.+..+.. ..+|++.++..+..+..
T Consensus 144 ~l~~~l~s--r~~~~--~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 144 KIIDPIQS--RCAVF--RFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAA 209 (319)
T ss_pred ccchhHHH--Hhhee--eeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888886 55542 23344445554444 23455688887776664 35788888887765543
No 98
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.21 E-value=1e-10 Score=120.77 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=97.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-----------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD----------- 270 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~----------- 270 (398)
.++|.+|++++|++.+.+.|...+. ......+|||.||.|||||++|+.+|+.+++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~------------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALE------------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHH------------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 5789999999999999988887765 12345689999999999999999999988653
Q ss_pred -------------EEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 271 -------------IYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 271 -------------~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
++++|...-.+-++++++.....-. ...+.||..++.- +..+++
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP----P~hV~F 152 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP----PSHVKF 152 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC----ccCeEE
Confidence 4444443334456677666553211 4566788877775 467999
Q ss_pred EEecCCCCCCChhccC-CCchhhHhhhhcCCCChHHHHHH
Q 048683 319 LFWTNHKEKLDPALLR-PGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 319 I~TTN~~~~LDpAllR-pGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|++|..+++|++.++. .-|||. =.++.+.+...+
T Consensus 153 IlATTe~~Kip~TIlSRcq~f~f-----kri~~~~I~~~L 187 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRFDF-----KRLDLEEIAKHL 187 (515)
T ss_pred EEecCCcCcCchhhhhccccccc-----cCCCHHHHHHHH
Confidence 9999999999999995 444443 345555554444
No 99
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=107.96 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=107.5
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
++..++..+.+|+|.+.+|+.+.+....|+.+. +.+.+||+|..||||||+++|+-++. +..+++++-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 777888999999999999999999999998743 35789999999999999999998876 578999999
Q ss_pred ccccChHHHHHHHHcCccc--------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhcc
Q 048683 277 TDIQFSSDLQFLLLTMPSR--------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALL 333 (398)
Q Consensus 277 s~~~~~~~L~~l~~~~~~~--------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAll 333 (398)
.++.+-+.|...+...+.+ .....|-..|||--...+++|+|.+|+|+.+.|+.-+.
T Consensus 122 ~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 122 EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 9998888888888877766 34455778899877777899999999999999887665
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.12 E-value=2e-10 Score=125.13 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=111.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEE
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYH 273 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~ 273 (398)
.|-++++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56678999999887776665442 1235689999999999999999999987 788999
Q ss_pred eecccccC--------hHHHHHHHHcCcccccchhhhhhhcCCccc------------------CCCCeEEEEecCCC--
Q 048683 274 LDLTDIQF--------SSDLQFLLLTMPSRVTLSGLLNFIDGSWSW------------------CGEGRIILFWTNHK-- 325 (398)
Q Consensus 274 l~~s~~~~--------~~~L~~l~~~~~~~~~ls~LL~~lDgl~s~------------------~~~~vivI~TTN~~-- 325 (398)
++++.+.. +..+++++..+......--++++++.+... ...++.+|++||..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 98776642 356777776653321000122333322110 12457889998864
Q ss_pred ---CCCChhccCCCchhhHhhhhcCCCChHHHHHHHh---------hhcCCCHHHHHHHHHc-------cccHHHHHHHH
Q 048683 326 ---EKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI---------MEMNGTPAEAAGELAN-------SAEAQVSLQGL 386 (398)
Q Consensus 326 ---~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~---------~~~~~tpa~i~~~l~~-------~~d~~~al~~l 386 (398)
-.+|+||.| ||+. + .++.|+.+...+|+. ....++++.+.....- ..-|+.|++-+
T Consensus 324 ~~~~~~d~al~r--Rf~~-i--~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ll 398 (731)
T TIGR02639 324 KNHFEKDRALSR--RFQK-I--DVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVI 398 (731)
T ss_pred HHHhhhhHHHHH--hCce-E--EeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHH
Confidence 368999999 9985 4 678888777777621 1245788887766531 12377777665
Q ss_pred HHHHH
Q 048683 387 IKFLH 391 (398)
Q Consensus 387 ~~~l~ 391 (398)
-++-.
T Consensus 399 d~a~a 403 (731)
T TIGR02639 399 DEAGA 403 (731)
T ss_pred HHhhh
Confidence 55443
No 101
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.09 E-value=8.1e-10 Score=116.12 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=53.6
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc------
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL------ 267 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l------ 267 (398)
+|.. ..+|.+|++++|.+...+.+...+. .+.+..+||+||||||||++|+++.+++
T Consensus 54 ~~~~----~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s 116 (531)
T TIGR02902 54 PLSE----KTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPAS 116 (531)
T ss_pred hHHH----hhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 5766 7899999999999988877764431 1224679999999999999999998753
Q ss_pred ----CCcEEEeeccc
Q 048683 268 ----KFDIYHLDLTD 278 (398)
Q Consensus 268 ----~~~~~~l~~s~ 278 (398)
+.+++.++++.
T Consensus 117 ~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 117 PFKEGAAFVEIDATT 131 (531)
T ss_pred CcCCCCCEEEEcccc
Confidence 36789999864
No 102
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.06 E-value=6.8e-10 Score=121.23 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=87.7
Q ss_pred cc-ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHH-
Q 048683 208 FK-DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDL- 285 (398)
Q Consensus 208 f~-~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L- 285 (398)
++ ++.|.+++|+.|.+.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 44 4899999999998877643321 11223458999999999999999999999999999988776543333
Q ss_pred --------------HHHHHcCccc------------------ccchhhhhhhcCCc----c-------cCCCCeEEEEec
Q 048683 286 --------------QFLLLTMPSR------------------VTLSGLLNFIDGSW----S-------WCGEGRIILFWT 322 (398)
Q Consensus 286 --------------~~l~~~~~~~------------------~~ls~LL~~lDgl~----s-------~~~~~vivI~TT 322 (398)
.+.+..+... ...+.|+..+|.-. . ..-.++++|+||
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 2222221110 11344555555210 0 001568999999
Q ss_pred CCCCCCChhccCCCchhhHhhhhcCCCChH
Q 048683 323 NHKEKLDPALLRPGRMDQRAFNYLGISHHH 352 (398)
Q Consensus 323 N~~~~LDpAllRpGR~D~l~~~~l~~~~~~ 352 (398)
|.. .|+|||+. ||+.+. |.+....+
T Consensus 473 N~~-~i~~aLl~--R~~ii~--~~~~t~ee 497 (784)
T PRK10787 473 NSM-NIPAPLLD--RMEVIR--LSGYTEDE 497 (784)
T ss_pred CCC-CCCHHHhc--ceeeee--cCCCCHHH
Confidence 988 49999998 998743 55655433
No 103
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.04 E-value=2.5e-09 Score=102.71 Aligned_cols=147 Identities=21% Similarity=0.176 Sum_probs=88.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHH---------------------------------HHH
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQF---------------------------------LLL 290 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~---------------------------------l~~ 290 (398)
+.+||+||||||||++|+++|+.+|.+++.+++..-....++.. ++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 56999999999999999999999999999998764322222110 000
Q ss_pred cCcc-------------cccchhhhhhhcCCc----cc--------CCCCeEEEEecCCCC-----CCChhccCCCchhh
Q 048683 291 TMPS-------------RVTLSGLLNFIDGSW----SW--------CGEGRIILFWTNHKE-----KLDPALLRPGRMDQ 340 (398)
Q Consensus 291 ~~~~-------------~~~ls~LL~~lDgl~----s~--------~~~~vivI~TTN~~~-----~LDpAllRpGR~D~ 340 (398)
...+ ..+.+.|+..|+.-. .. ...+..||+|+|... .+++||++ ||-
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~- 178 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLI- 178 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcE-
Confidence 0000 033444555554311 00 112456899999763 67899998 763
Q ss_pred HhhhhcCCCChHHHHHHHhhhcCCCHHHHHHHHH-----c--cccHHHHHHHHHHHHHHHHh
Q 048683 341 RAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELA-----N--SAEAQVSLQGLIKFLHVKLQ 395 (398)
Q Consensus 341 l~~~~l~~~~~~~~~~il~~~~~~tpa~i~~~l~-----~--~~d~~~al~~l~~~l~~~~~ 395 (398)
..+++.|+.+...+|+.....+.++.+...+. + ......+.+.++.+.+..+.
T Consensus 179 --~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~ 238 (262)
T TIGR02640 179 --TIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQ 238 (262)
T ss_pred --EEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHH
Confidence 33788888887778865555555443332221 1 22333346666666655543
No 104
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=3.2e-10 Score=97.83 Aligned_cols=92 Identities=27% Similarity=0.344 Sum_probs=61.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc----------------------------c
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR----------------------------V 296 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~----------------------------~ 296 (398)
++||+||||||||++|+.+|+.++.+++.+.++...+..+|.....-.... .
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 489999999999999999999999999999988766555553211110000 2
Q ss_pred cchhhhhhhcCCc----------ccCCC-----CeEEEEecCCCC----CCChhccCCCch
Q 048683 297 TLSGLLNFIDGSW----------SWCGE-----GRIILFWTNHKE----KLDPALLRPGRM 338 (398)
Q Consensus 297 ~ls~LL~~lDgl~----------s~~~~-----~vivI~TTN~~~----~LDpAllRpGR~ 338 (398)
++..|+..+|+-. ..... +..||+|+|..+ .+++||+| ||
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3334444444211 00011 379999999888 99999999 86
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.99 E-value=2.2e-09 Score=116.04 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=101.4
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+|.. ..+|.+|++++|++.+.... ..+...+... ...++|||||||||||++|+++|+..+.+++.
T Consensus 17 PLae----k~RP~tldd~vGQe~ii~~~-~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ 82 (725)
T PRK13341 17 PLAD----RLRPRTLEEFVGQDHILGEG-RLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSS 82 (725)
T ss_pred ChHH----hcCCCcHHHhcCcHHHhhhh-HHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCccee
Confidence 5655 67899999999998876531 1222222211 12368999999999999999999999999988
Q ss_pred eecccccChHHHHHHHHcCccc-----ccchhhhhhhcCCccc---------CCCCeEEEEec--CCCCCCChhccCCCc
Q 048683 274 LDLTDIQFSSDLQFLLLTMPSR-----VTLSGLLNFIDGSWSW---------CGEGRIILFWT--NHKEKLDPALLRPGR 337 (398)
Q Consensus 274 l~~s~~~~~~~L~~l~~~~~~~-----~~ls~LL~~lDgl~s~---------~~~~vivI~TT--N~~~~LDpAllRpGR 337 (398)
+++... ...++++.+...... ...--+++++|.+... ....+++|++| |....+++++++ |
T Consensus 83 lna~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S--R 159 (725)
T PRK13341 83 LNAVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS--R 159 (725)
T ss_pred ehhhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc--c
Confidence 887642 223343333222110 0000123333332211 01235556544 445679999997 5
Q ss_pred hhhHhhhhcCCCChHHHHHH----Hh--------hhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHH
Q 048683 338 MDQRAFNYLGISHHHLYEQM----LI--------MEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLH 391 (398)
Q Consensus 338 ~D~l~~~~l~~~~~~~~~~i----l~--------~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~ 391 (398)
+.. + .++..+.+....+ +. ....++++.+..+.. ..+|.+.++..|..++.
T Consensus 160 ~~v-~--~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 160 SRL-F--RLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVE 223 (725)
T ss_pred ccc-e--ecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 433 2 2343333333333 21 124566665554443 35788888877766553
No 106
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=7.2e-10 Score=102.48 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=121.2
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC----
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF---- 269 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~---- 269 (398)
.|.. .++|..+.||+|.++..+.+.-... . |- ...+++.||||||||+-+.++|.++=-
T Consensus 16 ~wVe----KYrP~~l~dIVGNe~tv~rl~via~----~-------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~k 78 (333)
T KOG0991|consen 16 PWVE----KYRPSVLQDIVGNEDTVERLSVIAK----E-------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYK 78 (333)
T ss_pred hHHH----hhCchHHHHhhCCHHHHHHHHHHHH----c-------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhh
Confidence 4855 9999999999999988776643221 1 11 235899999999999999999998732
Q ss_pred -cEEEeecccccChHHHHHHHHcCccc-ccc------hhhhhhhcCCcccC-----------CCCeEEEEecCCCCCCCh
Q 048683 270 -DIYHLDLTDIQFSSDLQFLLLTMPSR-VTL------SGLLNFIDGSWSWC-----------GEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 270 -~~~~l~~s~~~~~~~L~~l~~~~~~~-~~l------s~LL~~lDgl~s~~-----------~~~vivI~TTN~~~~LDp 330 (398)
-+.++++|+-...+-++..+...+.+ +++ --+|++-|.+.... ....-+.+++|.-++|=+
T Consensus 79 e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiE 158 (333)
T KOG0991|consen 79 EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIE 158 (333)
T ss_pred hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhh
Confidence 46788888876666666544332222 111 12444444332210 123357788998888887
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
.+.. |+-.+- |-.+.+.+....+ -.+...+|++-+++.+. ..+|.+.|++.|..-+
T Consensus 159 PIQS--RCAiLR--ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 159 PIQS--RCAILR--YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hHHh--hhHhhh--hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 7776 655543 7788887776665 45778999999999886 4589999999987654
No 107
>PRK06893 DNA replication initiation factor; Validated
Probab=98.98 E-value=4.9e-09 Score=98.71 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=89.8
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+....+.+||+.++.+... ....+... ........++||||||||||+|++|+|+++ +.....++.
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~~---------~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRKN---------FIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHHH---------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 5566778999998765432 22222211 111112347899999999999999999986 334444544
Q ss_pred ccccChHHHHHHHHcCccc---------------ccchhhhhhhcCCcccCCCCeEEEEecC-CCCCCC---hhccCCCc
Q 048683 277 TDIQFSSDLQFLLLTMPSR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTN-HKEKLD---PALLRPGR 337 (398)
Q Consensus 277 s~~~~~~~L~~l~~~~~~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~~LD---pAllRpGR 337 (398)
..... ...+.+....+. .....|.+.++.... .+..++|.|+| .|..++ |+|.+ |
T Consensus 76 ~~~~~--~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~s--R 149 (229)
T PRK06893 76 SKSQY--FSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLAS--R 149 (229)
T ss_pred HHhhh--hhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHH--H
Confidence 32210 011122111111 111123333443322 13345555555 566655 88887 5
Q ss_pred hh--hHhhhhcCCCChHHHHHHHh---hhcCC-CHHHHHHHHHcc--ccHHHHHHHHH
Q 048683 338 MD--QRAFNYLGISHHHLYEQMLI---MEMNG-TPAEAAGELANS--AEAQVSLQGLI 387 (398)
Q Consensus 338 ~D--~l~~~~l~~~~~~~~~~il~---~~~~~-tpa~i~~~l~~~--~d~~~al~~l~ 387 (398)
+- ..+ .++.|+.+.+.+|+. ...++ -+.++.++|+.+ +|....+..+.
T Consensus 150 l~~g~~~--~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 150 LTWGEIY--QLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HhcCCee--eCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 44 333 578888888888822 22222 356666777653 56654443333
No 108
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.3e-09 Score=101.17 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=80.8
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC--------cEEEeecc-
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF--------DIYHLDLT- 277 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--------~~~~l~~s- 277 (398)
+|++++|++.+++.+...+. ....++.|||+||+|+|||++|+++|+.+.+ +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999888877663 1234678999999999999999999997632 44444431
Q ss_pred -cccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCc
Q 048683 278 -DIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGR 337 (398)
Q Consensus 278 -~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR 337 (398)
.....+.++++....... ...+.||..++.. +++.++|++|+.++.|-|++.. |
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--R 143 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--R 143 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--h
Confidence 112334566655422111 2345688888764 4567888888889999999987 5
Q ss_pred hhh
Q 048683 338 MDQ 340 (398)
Q Consensus 338 ~D~ 340 (398)
+..
T Consensus 144 c~~ 146 (313)
T PRK05564 144 CQI 146 (313)
T ss_pred cee
Confidence 544
No 109
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=6.4e-09 Score=109.13 Aligned_cols=185 Identities=20% Similarity=0.261 Sum_probs=123.8
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHh----c--------C-----hhHHh----hhcCcccccceeeCCC
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFR----N--------G-----KEYYR----RVGRVWKRGYLLFGPP 252 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l----~--------~-----~~~~~----~~g~~~~rgiLL~GPP 252 (398)
-|.. .+.|..|.+|.+++.+-..+..+++.|= . . ++.+. ..+.|.++-+||+|||
T Consensus 260 LWVd----ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 260 LWVD----KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred eeec----ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 6855 8999999999999999999998887661 1 0 11111 1234566778999999
Q ss_pred CCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc--------ccchhhhhhhcCCcc------------cC
Q 048683 253 GTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR--------VTLSGLLNFIDGSWS------------WC 312 (398)
Q Consensus 253 GTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~--------~~ls~LL~~lDgl~s------------~~ 312 (398)
|-|||+||+.+|+++||.++++++++-.+...+++.+..+... +...-++++|||-.. .|
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~ 415 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATN 415 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998888777666544332 112225566766430 00
Q ss_pred ------CC--------------CeEEEEecCCCCCCChhcc--CCCchhhHhhhhcCCCChHHHH---HH-HhhhcCCCH
Q 048683 313 ------GE--------------GRIILFWTNHKEKLDPALL--RPGRMDQRAFNYLGISHHHLYE---QM-LIMEMNGTP 366 (398)
Q Consensus 313 ------~~--------------~vivI~TTN~~~~LDpAll--RpGR~D~l~~~~l~~~~~~~~~---~i-l~~~~~~tp 366 (398)
+. .+-||+.||.. --|||. || +=.++ .|.+.+...+.+ +| ..++....+
T Consensus 416 k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~--~A~ii-~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 416 KQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRP--FAEII-AFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred chhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhccc--ceEEE-EecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 00 14788999854 346664 31 22233 133333444443 34 456666777
Q ss_pred HHHHHHH-HccccHHHHHHHHH
Q 048683 367 AEAAGEL-ANSAEAQVSLQGLI 387 (398)
Q Consensus 367 a~i~~~l-~~~~d~~~al~~l~ 387 (398)
.-+..+. ....|.+.|++.|.
T Consensus 491 ~aL~~L~el~~~DIRsCINtLQ 512 (877)
T KOG1969|consen 491 KALNALCELTQNDIRSCINTLQ 512 (877)
T ss_pred HHHHHHHHHhcchHHHHHHHHH
Confidence 7777666 45689999999875
No 110
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.5e-09 Score=103.15 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=82.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
..+|.++++|+|.++.++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-+
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999999888766641 234678999999999999999999998732
Q ss_pred ----------------------cEEEeecc--c-------ccChHHHHHHHHcCccc-------------------ccch
Q 048683 270 ----------------------DIYHLDLT--D-------IQFSSDLQFLLLTMPSR-------------------VTLS 299 (398)
Q Consensus 270 ----------------------~~~~l~~s--~-------~~~~~~L~~l~~~~~~~-------------------~~ls 299 (398)
+++.+... + ...-+.++++....... ...+
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aan 159 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAAN 159 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHH
Confidence 12223210 1 01123444444322111 3445
Q ss_pred hhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhH
Q 048683 300 GLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQR 341 (398)
Q Consensus 300 ~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l 341 (398)
.||..++.. ....++|++|+.++.+.|.++. |+..+
T Consensus 160 aLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc~~i 195 (365)
T PRK07471 160 ALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RCRKL 195 (365)
T ss_pred HHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cceEE
Confidence 577766654 3456888999999999999887 77663
No 111
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.95 E-value=1.9e-09 Score=105.30 Aligned_cols=174 Identities=21% Similarity=0.162 Sum_probs=102.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc---EEEeeccc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD---IYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~---~~~l~~s~ 278 (398)
..+|.+++|.+|++++..+ ...+...++.. --..++|+||||||||+||+.||+...-+ |+++++..
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 5578889999888776554 22333222211 12469999999999999999999998766 77777665
Q ss_pred ccChHHHHHHHHcCcccccc--h---hhhhhhcCCcccC---------CCCeEEEEec--CCCCCCChhccCCCchhhHh
Q 048683 279 IQFSSDLQFLLLTMPSRVTL--S---GLLNFIDGSWSWC---------GEGRIILFWT--NHKEKLDPALLRPGRMDQRA 342 (398)
Q Consensus 279 ~~~~~~L~~l~~~~~~~~~l--s---~LL~~lDgl~s~~---------~~~vivI~TT--N~~~~LDpAllRpGR~D~l~ 342 (398)
. ...+++.+|....+...+ . -|++++-.+.... ...+++|++| |.--.|..||+. |+-..+
T Consensus 201 a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlS--RC~Vfv 277 (554)
T KOG2028|consen 201 A-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLS--RCRVFV 277 (554)
T ss_pred c-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHh--ccceeE
Confidence 4 356788888776553111 1 1333333322211 1346677654 555789999998 655533
Q ss_pred hhhcCCCChH----HHHHH--HhhhcC----------CCHHHHHHHHH--ccccHHHHHHHHHHHH
Q 048683 343 FNYLGISHHH----LYEQM--LIMEMN----------GTPAEAAGELA--NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 343 ~~~l~~~~~~----~~~~i--l~~~~~----------~tpa~i~~~l~--~~~d~~~al~~l~~~l 390 (398)
. =.++... +...| |..... +-...|.+++. ..+|++.||+.|...+
T Consensus 278 L--ekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 278 L--EKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSL 341 (554)
T ss_pred e--ccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 2233222 23333 111111 12234556664 4578999998887664
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.94 E-value=4.2e-09 Score=116.20 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=104.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEE
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIY 272 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~ 272 (398)
-.|-+++.++|.++....+++.+. + ..+.++||+||||||||++|+++|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~---r----------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL---R----------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh---c----------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 356789999999887655554442 1 235689999999999999999999976 35678
Q ss_pred Eeeccccc--------ChHHHHHHHHcCccc-ccchhhhhhhcCCcc-----------------cCCCCeEEEEecCCCC
Q 048683 273 HLDLTDIQ--------FSSDLQFLLLTMPSR-VTLSGLLNFIDGSWS-----------------WCGEGRIILFWTNHKE 326 (398)
Q Consensus 273 ~l~~s~~~--------~~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s-----------------~~~~~vivI~TTN~~~ 326 (398)
.++++.+. .+..+++++...... ...--++++++.+.. -..+++.+|+||+..+
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAE 327 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHH
Confidence 77776553 135677777654321 000002222221110 0124578888888643
Q ss_pred -----CCChhccCCCchhhHhhhhcCCCChHHHHHH---Hh------hhcCCCHHHHHHHHH-c------cccHHHHHHH
Q 048683 327 -----KLDPALLRPGRMDQRAFNYLGISHHHLYEQM---LI------MEMNGTPAEAAGELA-N------SAEAQVSLQG 385 (398)
Q Consensus 327 -----~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~------~~~~~tpa~i~~~l~-~------~~d~~~al~~ 385 (398)
.+||||.| ||.. + .++.|+.+...+| +. ....+++..+..... . ..-|+.|++-
T Consensus 328 ~~~~~~~d~AL~r--Rf~~-i--~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 328 YKKYFEKDPALTR--RFQV-V--KVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL 402 (852)
T ss_pred HhhhhhccHHHHH--hCeE-E--EeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence 49999999 9975 4 6788877766666 11 134567776655542 1 2346666654
Q ss_pred HHHH
Q 048683 386 LIKF 389 (398)
Q Consensus 386 l~~~ 389 (398)
+-++
T Consensus 403 ldea 406 (852)
T TIGR03345 403 LDTA 406 (852)
T ss_pred HHHH
Confidence 4443
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.92 E-value=1.8e-09 Score=119.38 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=90.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEE
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIY 272 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~ 272 (398)
-.|-.++.++|.++....+++.+. ...+.+++|+||||||||++|+++|..+ +.+++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 345679999999887666665553 1234679999999999999999999988 78999
Q ss_pred Eeeccccc--------ChHHHHHHHHcCccc-ccchhhhhhhcCCccc-----------------CCCCeEEEEecCCCC
Q 048683 273 HLDLTDIQ--------FSSDLQFLLLTMPSR-VTLSGLLNFIDGSWSW-----------------CGEGRIILFWTNHKE 326 (398)
Q Consensus 273 ~l~~s~~~--------~~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s~-----------------~~~~vivI~TTN~~~ 326 (398)
.++++.+. .+..++.+|...... ...--++++++.+... ..+++.+|+||+..+
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHH
Confidence 98877653 133566676543211 0001122222222110 124578999999877
Q ss_pred -----CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 -----KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 -----~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.+|+||.| ||+. + +++.|+.+...+|
T Consensus 319 ~r~~~~~d~al~r--Rf~~-i--~v~eP~~~~~~~i 349 (857)
T PRK10865 319 YRQYIEKDAALER--RFQK-V--FVAEPSVEDTIAI 349 (857)
T ss_pred HHHHhhhcHHHHh--hCCE-E--EeCCCCHHHHHHH
Confidence 49999999 9986 3 5677766555555
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.90 E-value=5.9e-09 Score=113.27 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=51.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
.|+|+++.++.|.+.+.....+-. . ...+...+||+||||||||.+|+++|..++.+++.+++++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 478999999888888865432110 0 0112335899999999999999999999999999999887643
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.88 E-value=5.4e-08 Score=100.54 Aligned_cols=219 Identities=11% Similarity=0.133 Sum_probs=114.5
Q ss_pred cceEEEEEcCcchhHHH-HHHHHHHHHHhHHHHhcCceEEEEecC---------Cc-------cee--------cccccc
Q 048683 148 VRHYELSFHKKHTDTVL-NLYLPHVLKKAKAVKEDCNTVKLHTVL---------RN-------CWD--------ANNVVL 202 (398)
Q Consensus 148 ~~~~~l~~~~~~~~~vl-~~yl~~v~~~~~~~~~~~~~~~~~~~~---------~~-------~w~--------~~~~~~ 202 (398)
...+.|.+.......++ +.|.+.+.....++-.....+++-... .. .-. .....+
T Consensus 36 ~~~l~l~vPn~F~~~wi~~~y~~~I~~al~~~~g~~~~I~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (450)
T PRK00149 36 DNTLTLYVPNRFVKDWIEKNYLDLIEEALQELTGENPKVEFVRPAAPSAEAPAAPAAAPPSSAAPAAAAEEAEPLFGSPL 115 (450)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEECCCccccccccccccccccccccccccccccccccCC
Confidence 34677777776544455 457777766655543333344332100 00 000 001223
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecc
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLT 277 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s 277 (398)
.+..+|++.+..+.-+. ....+..+..++ | ...++++||||||||||+|++|+|+++ +..++.+++.
T Consensus 116 ~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRL-AHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CCCCcccccccCCCcHH-HHHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 44568999553333222 223333333322 2 123569999999999999999999997 5668888776
Q ss_pred cccCh----------HHHHHHHHcC-----------cc-cccchhhhhhhcCCcccCCCCeEEEEecC-CCCC---CChh
Q 048683 278 DIQFS----------SDLQFLLLTM-----------PS-RVTLSGLLNFIDGSWSWCGEGRIILFWTN-HKEK---LDPA 331 (398)
Q Consensus 278 ~~~~~----------~~L~~l~~~~-----------~~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~~---LDpA 331 (398)
++... ..+.+.+... .. ..+...|+..++.+... +..+|+|+| .|.. ++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~---~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 188 KFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA---GKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC---CCcEEEECCCCHHHHHHHHHH
Confidence 54210 1111111100 00 01223445555554432 233445555 5444 7788
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHHH---hhh--cCCCHHHHHHHHHcc--ccHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQML---IME--MNGTPAEAAGELANS--AEAQ 380 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~il---~~~--~~~tpa~i~~~l~~~--~d~~ 380 (398)
|.. ||..-....+..|+.+.+.+|+ ... ..+ |.++.++|..+ +|.+
T Consensus 265 l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l-~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 265 LRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL-PDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHcCcCCCHH
Confidence 887 8875222267888988888882 222 234 45566666643 4544
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.87 E-value=5.7e-09 Score=113.38 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=102.6
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEEeec
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDL 276 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~ 276 (398)
.++.++|-++..+.+++.+.. ..+.++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 366788888777777665542 124678999999999999999999864 566777765
Q ss_pred cccc--------ChHHHHHHHHcCcccccchhhhhhh--------------------cCCcccCCCCeEEEEecCCCC--
Q 048683 277 TDIQ--------FSSDLQFLLLTMPSRVTLSGLLNFI--------------------DGSWSWCGEGRIILFWTNHKE-- 326 (398)
Q Consensus 277 s~~~--------~~~~L~~l~~~~~~~~~ls~LL~~l--------------------Dgl~s~~~~~vivI~TTN~~~-- 326 (398)
..+. .+..+..++.........--+++++ ..+-. ..++.+|++||.++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS 328 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHH
Confidence 5432 1333455543321110000012222 22211 24678999999765
Q ss_pred ---CCChhccCCCchhhHhhhhcCCCChHHHHHHH---------hhhcCCCHHHHHHHHH-------ccccHHHHHHHHH
Q 048683 327 ---KLDPALLRPGRMDQRAFNYLGISHHHLYEQML---------IMEMNGTPAEAAGELA-------NSAEAQVSLQGLI 387 (398)
Q Consensus 327 ---~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---------~~~~~~tpa~i~~~l~-------~~~d~~~al~~l~ 387 (398)
.+||||.| ||+. + .++.|+.+...+|+ ..+..+++.-+...+- ...-|++|++-+-
T Consensus 329 ~~~~~D~AL~r--RFq~-I--~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 329 NIFEKDRALAR--RFQK-I--DITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred HHhhccHHHHh--hCcE-E--EeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 58999999 9985 4 68888887777772 1245677776654431 1245777777766
Q ss_pred HHH
Q 048683 388 KFL 390 (398)
Q Consensus 388 ~~l 390 (398)
++-
T Consensus 404 ea~ 406 (758)
T PRK11034 404 EAG 406 (758)
T ss_pred HHH
Confidence 654
No 117
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.87 E-value=1.6e-08 Score=94.15 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=48.4
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.....+.+|++.+.. ..+.+.+.+..+.. ...++.++|+||||||||++|+++++++ +.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 6 VGLPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 345566789998732 22334444444332 1235679999999999999999999886 467888887
Q ss_pred cccc
Q 048683 277 TDIQ 280 (398)
Q Consensus 277 s~~~ 280 (398)
+.+.
T Consensus 75 ~~~~ 78 (226)
T TIGR03420 75 AELA 78 (226)
T ss_pred HHHH
Confidence 7664
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.86 E-value=1.7e-08 Score=94.49 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=86.6
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.+...|.+||++.+... +.+...+..+.. +....++++|+||||||||+++++++++. +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 45667789999773321 123333333222 22335689999999999999999999975 567777777
Q ss_pred ccccChHHHHHHHHc--------C--cccccchhhhhhhcCCcccCCCCeEEEEecCCCC---CCChhccCCCchhhHhh
Q 048683 277 TDIQFSSDLQFLLLT--------M--PSRVTLSGLLNFIDGSWSWCGEGRIILFWTNHKE---KLDPALLRPGRMDQRAF 343 (398)
Q Consensus 277 s~~~~~~~L~~l~~~--------~--~~~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~---~LDpAllRpGR~D~l~~ 343 (398)
.+.... + ..... . ........|+..++.... ....++|+|++.+. .+.+.|.. ||.....
T Consensus 79 ~~~~~~--~-~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~--~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~ 151 (227)
T PRK08903 79 ASPLLA--F-DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRA--HGQGALLVAGPAAPLALPLREDLRT--RLGWGLV 151 (227)
T ss_pred HHhHHH--H-hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeE
Confidence 654211 1 00000 0 000122234444544332 12334666666432 34566664 5543121
Q ss_pred hhcCCCChHHHHHHH-----hhhcCCCHHHHHHHHHc-cccHHHHHH
Q 048683 344 NYLGISHHHLYEQML-----IMEMNGTPAEAAGELAN-SAEAQVSLQ 384 (398)
Q Consensus 344 ~~l~~~~~~~~~~il-----~~~~~~tpa~i~~~l~~-~~d~~~al~ 384 (398)
-.++.++.+...+++ .....++++-+..+... .+++....+
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~ 198 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMA 198 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 245655554444442 22455666554444432 246554333
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.85 E-value=1.4e-08 Score=112.60 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=107.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEE
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIY 272 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~ 272 (398)
-.+-.++.++|.++..+.+++.+. ...+++++|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 356678999999887666655543 1235678999999999999999999986 67888
Q ss_pred Eeeccccc--------ChHHHHHHHHcCccc-ccchhhhhhhcCCcc-----------------cCCCCeEEEEecCCCC
Q 048683 273 HLDLTDIQ--------FSSDLQFLLLTMPSR-VTLSGLLNFIDGSWS-----------------WCGEGRIILFWTNHKE 326 (398)
Q Consensus 273 ~l~~s~~~--------~~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s-----------------~~~~~vivI~TTN~~~ 326 (398)
.++++.+. .+..+..++...... ...--++++++.+.. .....+.+|++||..+
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDE 313 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHH
Confidence 88876652 123566666543211 000112222222210 0124578888888663
Q ss_pred -----CCChhccCCCchhhHhhhhcCCCChHHHHHHH---------hhhcCCCHHHHHHHHH-c------cccHHHHHHH
Q 048683 327 -----KLDPALLRPGRMDQRAFNYLGISHHHLYEQML---------IMEMNGTPAEAAGELA-N------SAEAQVSLQG 385 (398)
Q Consensus 327 -----~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---------~~~~~~tpa~i~~~l~-~------~~d~~~al~~ 385 (398)
.+||||.| ||+. + +++.|+.+...+|+ .....+++..+..... . +.-|++|++-
T Consensus 314 ~r~~~~~d~al~r--Rf~~-i--~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidl 388 (852)
T TIGR03346 314 YRKYIEKDAALER--RFQP-V--FVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDL 388 (852)
T ss_pred HHHHhhcCHHHHh--cCCE-E--EeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHH
Confidence 58999999 9986 3 67888776666661 1234466666655542 1 1237777766
Q ss_pred HHHHHHH
Q 048683 386 LIKFLHV 392 (398)
Q Consensus 386 l~~~l~~ 392 (398)
+-++...
T Consensus 389 ld~a~a~ 395 (852)
T TIGR03346 389 IDEAAAR 395 (852)
T ss_pred HHHHHHH
Confidence 6555443
No 120
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.3e-09 Score=108.61 Aligned_cols=123 Identities=28% Similarity=0.420 Sum_probs=95.3
Q ss_pred hcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc------ChHHHHHHHHcCccc-------
Q 048683 229 RNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ------FSSDLQFLLLTMPSR------- 295 (398)
Q Consensus 229 l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~~~~------- 295 (398)
+..++.++..+..++++++++||||||||++++++|++ +.....++...+. +...++.++..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788899999999999999999999999999999 5555555544432 233344444322111
Q ss_pred -------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHH
Q 048683 296 -------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQ 356 (398)
Q Consensus 296 -------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~ 356 (398)
...+.++..+|++. .+. +++++.||.++.+|+|+.||||||+.+ +++.++...+.+
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREI--EVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceee--ecCCCCHHHHHH
Confidence 44778999999998 356 888999999999999999999999976 888888887777
Q ss_pred H
Q 048683 357 M 357 (398)
Q Consensus 357 i 357 (398)
|
T Consensus 158 i 158 (494)
T COG0464 158 I 158 (494)
T ss_pred H
Confidence 7
No 121
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=5.2e-08 Score=97.38 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-------c----
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF-------D---- 270 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~-------~---- 270 (398)
..||..+++|+|.++.++.+...+. ....+..+||+||+|+|||++|..+|+.+.. +
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 3689999999999999888876654 1134567999999999999999999998854 1
Q ss_pred -------------------EEEeecc---------cccChHHHHHHHHcCc---cc----------------ccchhhhh
Q 048683 271 -------------------IYHLDLT---------DIQFSSDLQFLLLTMP---SR----------------VTLSGLLN 303 (398)
Q Consensus 271 -------------------~~~l~~s---------~~~~~~~L~~l~~~~~---~~----------------~~ls~LL~ 303 (398)
++.+... .....+.++++..... .. ...+.||.
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk 163 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILK 163 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHH
Confidence 1111100 0001233333322111 11 23456788
Q ss_pred hhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHHHhh---hcCCCHHHHHHHH-HccccH
Q 048683 304 FIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIM---EMNGTPAEAAGEL-ANSAEA 379 (398)
Q Consensus 304 ~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~---~~~~tpa~i~~~l-~~~~d~ 379 (398)
.++... ...++|+.|+.++.+.|.++. |+..+ .++.++.+...+++.. ...+++..+...+ ...+++
T Consensus 164 ~LEEpp----~~~~fiLit~~~~~llptIrS--Rc~~i---~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~p 234 (351)
T PRK09112 164 TLEEPP----ARALFILISHSSGRLLPTIRS--RCQPI---SLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSV 234 (351)
T ss_pred HHhcCC----CCceEEEEECChhhccHHHHh--hccEE---EecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCH
Confidence 777642 456777778889999999886 76432 3444444434444222 1124455554443 245777
Q ss_pred HHHHHHH
Q 048683 380 QVSLQGL 386 (398)
Q Consensus 380 ~~al~~l 386 (398)
..|++-+
T Consensus 235 r~Al~ll 241 (351)
T PRK09112 235 RKALLLL 241 (351)
T ss_pred HHHHHHH
Confidence 7776555
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.82 E-value=3.3e-08 Score=100.67 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=87.7
Q ss_pred ccCCCCccc-cccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEee
Q 048683 202 LQHAMTFKD-LALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLD 275 (398)
Q Consensus 202 ~~~p~~f~~-l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~ 275 (398)
+....+||+ ++|.... .....+..+..++ + ...++++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNR--LAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcHH--HHHHHHHHHHhCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455678999 4454332 1223333333322 1 123568999999999999999999987 57788888
Q ss_pred cccccC----------hHHHHHHHHcC------------cccccchhhhhhhcCCcccCCCCeEEEEecC-CCCC---CC
Q 048683 276 LTDIQF----------SSDLQFLLLTM------------PSRVTLSGLLNFIDGSWSWCGEGRIILFWTN-HKEK---LD 329 (398)
Q Consensus 276 ~s~~~~----------~~~L~~l~~~~------------~~~~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~~---LD 329 (398)
+.++.. ...+.+.+... ....+...|+..++.+.. .+..+|+|+| .|+. ++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~---~~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHE---NGKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH---CCCCEEEecCCCHHHHhhhh
Confidence 765421 01111111110 000112234444444433 2233455555 4543 66
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHHH---hh--hcCCCHHHHHHHHHc
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQML---IM--EMNGTPAEAAGELAN 375 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~il---~~--~~~~tpa~i~~~l~~ 375 (398)
+.+.. ||.....-.++.|+.+.+.+|+ .. ...+ +.++.++|..
T Consensus 251 ~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l-~~e~l~~ia~ 298 (405)
T TIGR00362 251 ERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL-PDEVLEFIAK 298 (405)
T ss_pred hhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 78887 8876222367889988888882 22 2334 4566666654
No 123
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.78 E-value=1.8e-07 Score=93.55 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=100.9
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLT 277 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s 277 (398)
..++++|-++..+.|...+...+.+ ..+.+++++||||||||++++++++++. +.++.+++.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3467899999998888887755542 1245799999999999999999998753 578888876
Q ss_pred cccChHHH-HHHHHcC-------cc-------------------cccchhhhhhhcCCc-----------------ccCC
Q 048683 278 DIQFSSDL-QFLLLTM-------PS-------------------RVTLSGLLNFIDGSW-----------------SWCG 313 (398)
Q Consensus 278 ~~~~~~~L-~~l~~~~-------~~-------------------~~~ls~LL~~lDgl~-----------------s~~~ 313 (398)
...+...+ ..++... +. ....--+++++|.+. ...+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 65432221 1111111 00 000001233333331 1112
Q ss_pred CCeEEEEecCCCC---CCChhccCCCchhh-HhhhhcCCCChHHHHHHHh---h----hcCCCHHHHH---HHHH-cccc
Q 048683 314 EGRIILFWTNHKE---KLDPALLRPGRMDQ-RAFNYLGISHHHLYEQMLI---M----EMNGTPAEAA---GELA-NSAE 378 (398)
Q Consensus 314 ~~vivI~TTN~~~---~LDpAllRpGR~D~-l~~~~l~~~~~~~~~~il~---~----~~~~tpa~i~---~~l~-~~~d 378 (398)
..+.+|++||.++ .+++.+.+ ||.. .+ .++..+.+...+|+. . ...++++.+. +... ..+|
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i--~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEI--IFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCccee--eeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC
Confidence 4578899999886 68888877 6642 22 455556655566621 1 1124444332 2211 2488
Q ss_pred HHHHHHHHHHHHHHH
Q 048683 379 AQVSLQGLIKFLHVK 393 (398)
Q Consensus 379 ~~~al~~l~~~l~~~ 393 (398)
++.+++-+..+.+..
T Consensus 240 ~R~al~~l~~a~~~a 254 (365)
T TIGR02928 240 ARKAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888776666543
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.77 E-value=3e-08 Score=109.55 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=101.2
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEEeec
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDL 276 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~ 276 (398)
.++.++|.++..+.+++.+. ...++++||+||||||||++|+++|... +.+++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 57788998888887776654 2245789999999999999999999986 478999998
Q ss_pred cccc--------ChHHHHHHHHcCcccccchhhhhhhcCCccc-----------------CCCCeEEEEecCCCC-----
Q 048683 277 TDIQ--------FSSDLQFLLLTMPSRVTLSGLLNFIDGSWSW-----------------CGEGRIILFWTNHKE----- 326 (398)
Q Consensus 277 s~~~--------~~~~L~~l~~~~~~~~~ls~LL~~lDgl~s~-----------------~~~~vivI~TTN~~~----- 326 (398)
+.+. .+..+..++..+......--++++++.+... ...++.+|++||..+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 7653 2346777776543221011122333211110 013477888888654
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH-------Hh--hhcCCCHHHHHHHHH--c-----cccHHHHHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM-------LI--MEMNGTPAEAAGELA--N-----SAEAQVSLQGLIKFL 390 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-------l~--~~~~~tpa~i~~~l~--~-----~~d~~~al~~l~~~l 390 (398)
..||+|.| ||..+ .+..|+.+....| +. ....+++.-+....- . ..-|+.|++-+-++.
T Consensus 324 e~D~aL~r--Rf~~I---~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 324 EKDPALER--RFQPV---YVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred hcCHHHHh--cceEE---ecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHH
Confidence 58999999 99873 3455554444444 11 123355554443321 1 123777766555544
Q ss_pred H
Q 048683 391 H 391 (398)
Q Consensus 391 ~ 391 (398)
.
T Consensus 399 a 399 (821)
T CHL00095 399 S 399 (821)
T ss_pred H
Confidence 3
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.77 E-value=3.8e-08 Score=107.41 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=48.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCc---ccc-cceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV---WKR-GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~r-giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
..|+|+++.++.+.+.+... +.|.. .|. .+||+||||||||++|+++|..++.+++.+++++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 34677777777776666532 22321 133 489999999999999999999999999999988753
No 126
>PRK08727 hypothetical protein; Validated
Probab=98.77 E-value=8.8e-08 Score=90.43 Aligned_cols=169 Identities=18% Similarity=0.152 Sum_probs=93.1
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+....+.+||+.++.+.-. ...+..... | .....++|+||+|||||++++|+|+++ +.....++.
T Consensus 10 ~~~~~~~~f~~f~~~~~n~---~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGL---LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHHH---HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 4456667899987665421 122221111 1 123459999999999999999997775 556666665
Q ss_pred ccccChHHHHHHHHcCccc---------------ccchhhhhhhcCCcccCCCCeEEEEecC-CCCCC---ChhccCCCc
Q 048683 277 TDIQFSSDLQFLLLTMPSR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTN-HKEKL---DPALLRPGR 337 (398)
Q Consensus 277 s~~~~~~~L~~l~~~~~~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~~L---DpAllRpGR 337 (398)
.+.. ..+.+.+....+. .....+++.++.... .+.-||+|+| .|..+ +|+|.+ |
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~---~~~~vI~ts~~~p~~l~~~~~dL~S--R 150 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARA---AGITLLYTARQMPDGLALVLPDLRS--R 150 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHH---cCCeEEEECCCChhhhhhhhHHHHH--H
Confidence 5432 2222332221111 111123333333322 2334666665 66655 799998 7
Q ss_pred hhhHhhhhcCCCChHHHHHHHh-----hhcCCCHHHHHHHHHc--cccHHHHHHHHHH
Q 048683 338 MDQRAFNYLGISHHHLYEQMLI-----MEMNGTPAEAAGELAN--SAEAQVSLQGLIK 388 (398)
Q Consensus 338 ~D~l~~~~l~~~~~~~~~~il~-----~~~~~tpa~i~~~l~~--~~d~~~al~~l~~ 388 (398)
|.....-.++.|+.+.+.+|+. ....++ .++.++|.. .+|...++..|..
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~-~e~~~~La~~~~rd~r~~l~~L~~ 207 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLALD-EAAIDWLLTHGERELAGLVALLDR 207 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7664333567777777777732 233444 444555543 3688877554443
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=7.2e-08 Score=91.13 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=88.8
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~ 276 (398)
+......+||+.+-.. - ......+..+...+ ..+.++||||||||||+|++++|+++. ..+..++.
T Consensus 13 ~~~~~~~~fd~f~~~~-n-~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 13 LYLPDDETFASFYPGD-N-DSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCCcCCccccccCc-c-HHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 3355667899877331 1 22334444332211 235789999999999999999998764 33445544
Q ss_pred ccccC-hHHHHHHHHcCc-----------c-cccchhhhhhhcCCcccCCCCeEEEEecCCCCC---CChhccCCCchhh
Q 048683 277 TDIQF-SSDLQFLLLTMP-----------S-RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK---LDPALLRPGRMDQ 340 (398)
Q Consensus 277 s~~~~-~~~L~~l~~~~~-----------~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~---LDpAllRpGR~D~ 340 (398)
..... ..++.+.+.... . ......|.+.++..... +...+|+.+++.|.. +.|+|.. |+..
T Consensus 82 ~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~ 158 (235)
T PRK08084 82 DKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDW 158 (235)
T ss_pred HHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhC
Confidence 43211 122222221100 0 01111223333333221 112344444456555 6789998 7764
Q ss_pred HhhhhcCCCChHHHHHHHh---h--hcCCCHHHHHHHHHcc--ccHHHHHHHHHH
Q 048683 341 RAFNYLGISHHHLYEQMLI---M--EMNGTPAEAAGELANS--AEAQVSLQGLIK 388 (398)
Q Consensus 341 l~~~~l~~~~~~~~~~il~---~--~~~~tpa~i~~~l~~~--~d~~~al~~l~~ 388 (398)
...-.+..|+.+.+.+++. . +..+ +.++.++|.++ +|...++..|..
T Consensus 159 g~~~~l~~~~~~~~~~~l~~~a~~~~~~l-~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQLRARLRGFEL-PEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CceeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2322566676666666622 2 2333 45666666643 566655444443
No 128
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.74 E-value=2.6e-08 Score=101.40 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=24.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+++++|+||||||||++|+++|+.++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999999999999999998853
No 129
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.74 E-value=3.7e-08 Score=97.80 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=51.5
Q ss_pred CCcc-ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-------cEEEeec
Q 048683 206 MTFK-DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF-------DIYHLDL 276 (398)
Q Consensus 206 ~~f~-~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~-------~~~~l~~ 276 (398)
.-|+ ++.|.++.++++.+.+.....+ . ...++.++|+||||||||++|+++|+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQG------L-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhc------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3466 8999999999998877655421 1 123567899999999999999999999976 8998877
No 130
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.73 E-value=4.5e-08 Score=97.02 Aligned_cols=110 Identities=26% Similarity=0.247 Sum_probs=73.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHH------HHHH-c------------C-----------
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQ------FLLL-T------------M----------- 292 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~------~l~~-~------------~----------- 292 (398)
.+.+||-||||||||++|+++|..++.+++.+.++.-...+++. .... . .
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 45799999999999999999999999999999987654333321 1100 0 0
Q ss_pred -cccccchhhhhhhcC-------Cc-ccCCCCeEEEEecC-----CCCCCChhccCCCchhhHhhhhcCCCChHHHHH
Q 048683 293 -PSRVTLSGLLNFIDG-------SW-SWCGEGRIILFWTN-----HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQ 356 (398)
Q Consensus 293 -~~~~~ls~LL~~lDg-------l~-s~~~~~vivI~TTN-----~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~ 356 (398)
....+.+.||..|+. .. -......+||+|+| ....|++|+++ ||-. ..+++.|+.+.-..
T Consensus 123 ra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~--~~~v~yp~~~~e~~ 196 (329)
T COG0714 123 RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL--RIYVDYPDSEEEER 196 (329)
T ss_pred cCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE--EEecCCCCchHHHH
Confidence 001455667766664 11 11235678888989 56678999999 8854 23677775443333
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.73 E-value=9e-08 Score=102.35 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=50.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.+...+.+...+. .+.+..++|+||||||||++|+++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 4568999999999988887654442 1234579999999999999999998765 3568
Q ss_pred EEeecccc
Q 048683 272 YHLDLTDI 279 (398)
Q Consensus 272 ~~l~~s~~ 279 (398)
+.+++..+
T Consensus 214 v~i~~~~l 221 (615)
T TIGR02903 214 VEVDGTTL 221 (615)
T ss_pred EEEechhc
Confidence 88887655
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=8.8e-08 Score=94.90 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=84.2
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeeccc---ccChHHHHHHHHcCcc
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLTD---IQFSSDLQFLLLTMPS 294 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s~---~~~~~~L~~l~~~~~~ 294 (398)
.+.++||+||+|+||+++|.++|+.+.+ +++.+.... ...-++++++......
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999998854 455554432 1234566665543321
Q ss_pred c-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHH
Q 048683 295 R-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYE 355 (398)
Q Consensus 295 ~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~ 355 (398)
. ...+.||..++.. +++.++|++|+.++.|.|+++. |+..+ .+..++.+...
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc~~~---~~~~~~~~~~~ 171 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RCQQQ---ACPLPSNEESL 171 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hceee---eCCCcCHHHHH
Confidence 1 3456688888774 3578899999999999999998 76663 34444444333
Q ss_pred HHHhhhc-CCCHHHHHHHH-HccccHHHHH
Q 048683 356 QMLIMEM-NGTPAEAAGEL-ANSAEAQVSL 383 (398)
Q Consensus 356 ~il~~~~-~~tpa~i~~~l-~~~~d~~~al 383 (398)
+.+.... ...+.+....+ +..+.+..|+
T Consensus 172 ~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 172 QWLQQALPESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred HHHHHhcccCChHHHHHHHHHcCCCHHHHH
Confidence 3333322 34454444333 3345555544
No 133
>PRK06620 hypothetical protein; Validated
Probab=98.72 E-value=4.4e-08 Score=91.35 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=88.1
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcc-cccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVW-KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~-~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
+...+..+|++++-.+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++. ...
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 34455568999765553322 3333433322 122222 3679999999999999999999998764332 111
Q ss_pred ccChHHHHHHHHcC-------cccccchhhhhhhcCCcccCCCCeEEEEecCCCCC--CChhccCCCchhhHhhhhcCCC
Q 048683 279 IQFSSDLQFLLLTM-------PSRVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK--LDPALLRPGRMDQRAFNYLGIS 349 (398)
Q Consensus 279 ~~~~~~L~~l~~~~-------~~~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~--LDpAllRpGR~D~l~~~~l~~~ 349 (398)
. .. ..+... .....-..|...++.+.. .+..++|.++..|.. + |+|+. |+.....--+..|
T Consensus 78 ~--~~---~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~p 147 (214)
T PRK06620 78 F--NE---EILEKYNAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSP 147 (214)
T ss_pred h--ch---hHHhcCCEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCC
Confidence 0 00 011000 000000112222222222 233456665555543 5 78887 7774222256777
Q ss_pred ChHHHHHHHh---hhcCC-CHHHHHHHHHc--cccHHHHHHHHHH
Q 048683 350 HHHLYEQMLI---MEMNG-TPAEAAGELAN--SAEAQVSLQGLIK 388 (398)
Q Consensus 350 ~~~~~~~il~---~~~~~-tpa~i~~~l~~--~~d~~~al~~l~~ 388 (398)
+.+.+.+++. ...++ -|.++.++|+. .+|....+..|..
T Consensus 148 d~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 148 DDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 8777777622 22222 46777777765 3566655444443
No 134
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.71 E-value=6.1e-08 Score=88.13 Aligned_cols=129 Identities=21% Similarity=0.229 Sum_probs=76.8
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeecccc-cChHHHHHHHHcCccc-
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLTDI-QFSSDLQFLLLTMPSR- 295 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s~~-~~~~~L~~l~~~~~~~- 295 (398)
.+..+|||||||+|||++|+++|+.+.. ++..+....- ...+.+++++......
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4567999999999999999999998743 2333332211 1234554444332211
Q ss_pred ------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 296 ------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 296 ------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
...+.||..|+.. ++..++|++||.++.|++++.+ |+.. + .+..++.+...++
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~~~-~--~~~~~~~~~~~~~ 163 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RCQV-L--PFPPLSEEALLQW 163 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hcEE-e--eCCCCCHHHHHHH
Confidence 2345577777663 3456788888888999999998 6543 2 3444444433444
Q ss_pred HhhhcCCCHHHHHHHHH-ccccHH
Q 048683 358 LIMEMNGTPAEAAGELA-NSAEAQ 380 (398)
Q Consensus 358 l~~~~~~tpa~i~~~l~-~~~d~~ 380 (398)
+... .+++..++..+. ..+++.
T Consensus 164 l~~~-gi~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 164 LIRQ-GISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHc-CCCHHHHHHHHHHcCCCcc
Confidence 3333 477766554443 234444
No 135
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.5e-07 Score=92.67 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=95.8
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC-----------------
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF----------------- 269 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------------- 269 (398)
.|++|+|++++++.+...+.. ...+..+||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999988777641 133568999999999999999999998632
Q ss_pred -cEEEeecccc-----------------------cChHHHHHHHHcCccc-------------------ccchhhhhhhc
Q 048683 270 -DIYHLDLTDI-----------------------QFSSDLQFLLLTMPSR-------------------VTLSGLLNFID 306 (398)
Q Consensus 270 -~~~~l~~s~~-----------------------~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lD 306 (398)
+++.+..... ..-+.++++....... ...+.||..|+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 2233322100 0112344443222111 23455888887
Q ss_pred CCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHHHhhhcC--CCHHHHHHHH-HccccHHHHH
Q 048683 307 GSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMN--GTPAEAAGEL-ANSAEAQVSL 383 (398)
Q Consensus 307 gl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~~~~--~tpa~i~~~l-~~~~d~~~al 383 (398)
... ..++|++|+.++.|-|+++. |+..+- +..+..+...+++..... ...++....+ +..+++..|+
T Consensus 150 EPp-----~~~fILi~~~~~~Ll~TI~S--Rcq~i~---f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 150 EPG-----NGTLILIAPSPESLLPTIVS--RCQIIP---FYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAI 219 (314)
T ss_pred CCC-----CCeEEEEECChHhCcHHHHh--hceEEe---cCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHH
Confidence 742 34678888999999999997 665532 333333333444332221 1122223333 3567888887
Q ss_pred HHHHH
Q 048683 384 QGLIK 388 (398)
Q Consensus 384 ~~l~~ 388 (398)
+.+..
T Consensus 220 ~~l~~ 224 (314)
T PRK07399 220 ANIEQ 224 (314)
T ss_pred HHHHH
Confidence 75543
No 136
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.71 E-value=6.1e-08 Score=82.10 Aligned_cols=96 Identities=28% Similarity=0.334 Sum_probs=62.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHHH-----------cCccc-------------
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLLL-----------TMPSR------------- 295 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~~-----------~~~~~------------- 295 (398)
.+.++++||||||||++++.+++.+ +.+++.+++.............. .....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4679999999999999999999998 88999998877643222211110 00000
Q ss_pred ccchhhhhhhcCCccc--CCCCeEEEEecCCCC--CCChhccCCCchhh
Q 048683 296 VTLSGLLNFIDGSWSW--CGEGRIILFWTNHKE--KLDPALLRPGRMDQ 340 (398)
Q Consensus 296 ~~ls~LL~~lDgl~s~--~~~~vivI~TTN~~~--~LDpAllRpGR~D~ 340 (398)
.....++..+...... ...++.+|++||... .+++.+.. |++.
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~ 145 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDI 145 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhcc
Confidence 1223344444444321 025678889999877 78888776 8764
No 137
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.2e-07 Score=94.02 Aligned_cols=116 Identities=21% Similarity=0.350 Sum_probs=76.9
Q ss_pred Ccccccc-ChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC----------------
Q 048683 207 TFKDLAL-DSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF---------------- 269 (398)
Q Consensus 207 ~f~~l~g-~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~---------------- 269 (398)
.|++|.| ++.+++.+...+. ....+..+|||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 7777777665553 1234678999999999999999999998632
Q ss_pred --------cEEEeecccc-cChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeEEEEe
Q 048683 270 --------DIYHLDLTDI-QFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRIILFW 321 (398)
Q Consensus 270 --------~~~~l~~s~~-~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~vivI~T 321 (398)
++..+....- ..-++++++...... + ...+.||..|+.. ++..++|++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP----p~~~~~Il~ 146 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP----SGGTTAILL 146 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC----CCCceEEEE
Confidence 2333332211 123455554432211 1 3345688888874 356788889
Q ss_pred cCCCCCCChhccCCCchhh
Q 048683 322 TNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 322 TN~~~~LDpAllRpGR~D~ 340 (398)
|+.++.|-|+++. |+-.
T Consensus 147 t~~~~~ll~TIrS--Rc~~ 163 (329)
T PRK08058 147 TENKHQILPTILS--RCQV 163 (329)
T ss_pred eCChHhCcHHHHh--hcee
Confidence 9999999999997 5555
No 138
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=1e-07 Score=99.70 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=59.0
Q ss_pred cCCcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 190 VLRNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 190 ~~~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.+...|.. .+.|.+.++|+......+++...+...+. +....+-+||+||||||||++++++|+++|+
T Consensus 4 ~~~~~W~~----ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 4 DESEPWVE----KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cccCccch----hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567966 89999999999998888888877775443 2233455788999999999999999999999
Q ss_pred cEEEe
Q 048683 270 DIYHL 274 (398)
Q Consensus 270 ~~~~l 274 (398)
.+.+-
T Consensus 72 ~v~Ew 76 (519)
T PF03215_consen 72 EVQEW 76 (519)
T ss_pred eeEEe
Confidence 88874
No 139
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.69 E-value=5.4e-08 Score=99.14 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=53.8
Q ss_pred Cccc-cccChHHHHHHHHHHHHHhcChhHHhh--hcC-cccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 207 TFKD-LALDSELKKMIIKDLDIFRNGKEYYRR--VGR-VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 207 ~f~~-l~g~~~~k~~l~~~l~~~l~~~~~~~~--~g~-~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
.++. |+|+++.|+.+...+...+++-..... -.. ..+.++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3543 899999999887766543332111000 011 2356799999999999999999999999999999987763
No 140
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.68 E-value=6.7e-09 Score=88.37 Aligned_cols=91 Identities=27% Similarity=0.297 Sum_probs=50.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHH--HHcCc--------------------cc---ccchh
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFL--LLTMP--------------------SR---VTLSG 300 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l--~~~~~--------------------~~---~~ls~ 300 (398)
+||.|+||+|||++|+++|..++..+.++.++.-...+++.-. +.... ++ .+.+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQsA 81 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQSA 81 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHHH
Confidence 7999999999999999999999999999987532122222100 00000 01 56777
Q ss_pred hhhhhc-------CCcccCCCCeEEEEecCCCC-----CCChhccCCCch
Q 048683 301 LLNFID-------GSWSWCGEGRIILFWTNHKE-----KLDPALLRPGRM 338 (398)
Q Consensus 301 LL~~lD-------gl~s~~~~~vivI~TTN~~~-----~LDpAllRpGR~ 338 (398)
||..|. |..-..++..+||+|-|..+ .|+.|++- ||
T Consensus 82 lLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 82 LLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp HHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred HHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 877763 33334457789999999877 78888886 65
No 141
>PRK05642 DNA replication initiation factor; Validated
Probab=98.68 E-value=2e-07 Score=88.02 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=91.5
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+......+||+.+... .....+.+..+.... +....++++||||+|||||+|++|+|+++ +..++.++.
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 4455667899987332 233444444443211 11123678999999999999999999864 567777777
Q ss_pred ccccCh-HHHHHHHHcC-----------cc-cccchhhhhhhcCCcccCCCCeEEEEecCCCCC---CChhccCCCchhh
Q 048683 277 TDIQFS-SDLQFLLLTM-----------PS-RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK---LDPALLRPGRMDQ 340 (398)
Q Consensus 277 s~~~~~-~~L~~l~~~~-----------~~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~---LDpAllRpGR~D~ 340 (398)
.++... ..+.+.+... .. ......|.+.++.+.. .+..+||.++..|.. +.|+|.. ||--
T Consensus 82 ~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~S--Rl~~ 157 (234)
T PRK05642 82 AELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKS--RLTL 157 (234)
T ss_pred HHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHH--HHhc
Confidence 665421 2222222111 00 1122335555555433 123444444444543 3688887 7654
Q ss_pred HhhhhcCCCChHHHHHHHh-----hhcCCCHHHHHHHHHcc--ccHHHHH
Q 048683 341 RAFNYLGISHHHLYEQMLI-----MEMNGTPAEAAGELANS--AEAQVSL 383 (398)
Q Consensus 341 l~~~~l~~~~~~~~~~il~-----~~~~~tpa~i~~~l~~~--~d~~~al 383 (398)
...--+..|+.+.+.+++. ....+ |.++.++|+.+ +|....+
T Consensus 158 gl~~~l~~~~~e~~~~il~~ka~~~~~~l-~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 158 ALVFQMRGLSDEDKLRALQLRASRRGLHL-TDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCHHHHH
Confidence 2211345566666666622 22233 46777777753 4555433
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.67 E-value=1.4e-07 Score=99.55 Aligned_cols=161 Identities=11% Similarity=0.134 Sum_probs=93.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeec
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDL 276 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~ 276 (398)
+....+|++++..+.-.. ....+.....+ .+ .+.+.++|||++|||||+|++|+|+++ ++.++.+++
T Consensus 281 L~~~~TFDnFvvG~sN~~-A~aaa~avae~------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRF-AHAAAVAVAEA------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccHH-HHHHHHHHHhC------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 455668999874443221 11222222221 12 123569999999999999999999987 567788877
Q ss_pred ccccCh----------HHHHHHHHcC-----------cc-cccchhhhhhhcCCcccCCCCeEEEEecCCC----CCCCh
Q 048683 277 TDIQFS----------SDLQFLLLTM-----------PS-RVTLSGLLNFIDGSWSWCGEGRIILFWTNHK----EKLDP 330 (398)
Q Consensus 277 s~~~~~----------~~L~~l~~~~-----------~~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~----~~LDp 330 (398)
.++... ..+.+.+... .. ..+...|.+.++.+.. .+.-||+|||.+ ..+++
T Consensus 353 eef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e---~gk~IIITSd~~P~eL~~l~~ 429 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHN---ANKQIVLSSDRPPKQLVTLED 429 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHh---cCCCEEEecCCChHhhhhccH
Confidence 654210 0111111110 00 0122335555555443 233455677754 36788
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHHHh---hhcCC-CHHHHHHHHHc
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQMLI---MEMNG-TPAEAAGELAN 375 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~il~---~~~~~-tpa~i~~~l~~ 375 (398)
.|.. ||..-+.-.+..|+.+.+.+|+. ....+ -+.++.++|+.
T Consensus 430 rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~ 476 (617)
T PRK14086 430 RLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIAS 476 (617)
T ss_pred HHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 8998 88884444778899999999832 22222 25777788765
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.65 E-value=5.6e-08 Score=95.47 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=70.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHH----HHcC--------------------------
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFL----LLTM-------------------------- 292 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l----~~~~-------------------------- 292 (398)
.+.+||.||||||||++++.+|+.++++++.++++...+..++.-. +...
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 4679999999999999999999999999999987654332221100 0000
Q ss_pred --cccccchhhhhhhcC--------C-ccc-CCCCeEEEEecCCCC------------CCChhccCCCchhhHhhhhcCC
Q 048683 293 --PSRVTLSGLLNFIDG--------S-WSW-CGEGRIILFWTNHKE------------KLDPALLRPGRMDQRAFNYLGI 348 (398)
Q Consensus 293 --~~~~~ls~LL~~lDg--------l-~s~-~~~~vivI~TTN~~~------------~LDpAllRpGR~D~l~~~~l~~ 348 (398)
..-.+++.|...||. . ..- ......||+|+|..+ .+++|++- ||-..+ .++.
T Consensus 144 n~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~--~~~Y 219 (327)
T TIGR01650 144 DAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVT--TLNY 219 (327)
T ss_pred hccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEe--eCCC
Confidence 000333343333331 0 000 123567899999865 45788887 776533 5677
Q ss_pred CChHHHHHHHh
Q 048683 349 SHHHLYEQMLI 359 (398)
Q Consensus 349 ~~~~~~~~il~ 359 (398)
|+++...+|+.
T Consensus 220 p~~e~E~~Il~ 230 (327)
T TIGR01650 220 LEHDNEAAIVL 230 (327)
T ss_pred CCHHHHHHHHH
Confidence 78877777743
No 144
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=4e-07 Score=98.37 Aligned_cols=170 Identities=17% Similarity=0.105 Sum_probs=101.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEEeeccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDLTD 278 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~s~ 278 (398)
+.|.+-++..++|...+...+.+ ..+.+.++++||||||||.+++.+.+++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 67888888888888877766542 1222334699999999999999998776 26678888865
Q ss_pred ccChHH-----------------------HHHHHHcCcc--cccchhhhhhhcCCcc--------------cCCCCeEEE
Q 048683 279 IQFSSD-----------------------LQFLLLTMPS--RVTLSGLLNFIDGSWS--------------WCGEGRIIL 319 (398)
Q Consensus 279 ~~~~~~-----------------------L~~l~~~~~~--~~~ls~LL~~lDgl~s--------------~~~~~vivI 319 (398)
+..... +..+|..... +...--+|+++|-+.. ..+..++||
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 432221 1222222111 0111123444443321 113457888
Q ss_pred EecCC---CCCCChhccCCCchhh--HhhhhcCCCChHHHHHHHhh----h-cCCCHHHHHHHHHc-----cccHHHHHH
Q 048683 320 FWTNH---KEKLDPALLRPGRMDQ--RAFNYLGISHHHLYEQMLIM----E-MNGTPAEAAGELAN-----SAEAQVSLQ 384 (398)
Q Consensus 320 ~TTN~---~~~LDpAllRpGR~D~--l~~~~l~~~~~~~~~~il~~----~-~~~tpa~i~~~l~~-----~~d~~~al~ 384 (398)
++||. ++.|+|.+.. ||.. +. | ...+.+...+|+.. . ..++++. .+++.+ .+|++.||+
T Consensus 907 GISNdlDLperLdPRLRS--RLg~eeIv--F-~PYTaEQL~dILk~RAe~A~gVLdDdA-IELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRS--RLAFGRLV--F-SPYKGDEIEKIIKERLENCKEIIDHTA-IQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred EecCchhcchhhhhhhhh--cccccccc--C-CCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhhhhcCCHHHHHHH
Confidence 99985 6678888876 4433 33 3 44455555666221 1 2244444 444432 589999999
Q ss_pred HHHHHHHH
Q 048683 385 GLIKFLHV 392 (398)
Q Consensus 385 ~l~~~l~~ 392 (398)
-|..+.+.
T Consensus 981 ILRrAgEi 988 (1164)
T PTZ00112 981 ICRKAFEN 988 (1164)
T ss_pred HHHHHHhh
Confidence 88888764
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.64 E-value=7.5e-08 Score=95.44 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=41.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..|..|++|+|.++.++.+.-.+. . +...++||+||||||||++|+++|+.+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~---~----------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAI---D----------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHh---c----------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 357789999999999887754321 0 112479999999999999999999998
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.62 E-value=2.3e-07 Score=95.52 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=86.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeec
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDL 276 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~ 276 (398)
+.+..|||+.+-.+.-+.. ...+..+..++ | +.++++||||||||||+|++|+|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a-~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFA-YHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHHH-HHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4556789997743333222 22333333322 1 23569999999999999999999986 456777776
Q ss_pred ccccC----------hHHHHHHHHcCccc-------------ccchhhhhhhcCCcccCCCCeEEEEec-CCCCC---CC
Q 048683 277 TDIQF----------SSDLQFLLLTMPSR-------------VTLSGLLNFIDGSWSWCGEGRIILFWT-NHKEK---LD 329 (398)
Q Consensus 277 s~~~~----------~~~L~~l~~~~~~~-------------~~ls~LL~~lDgl~s~~~~~vivI~TT-N~~~~---LD 329 (398)
.++.. ...+.+.+.....- .+...|+..++.+.. .+..+|+|| +.|.. ++
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHH
Confidence 65421 01111111100000 111234444444433 223455555 45554 55
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHHHh---h--hcCCCHHHHHHHHHc
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQMLI---M--EMNGTPAEAAGELAN 375 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~il~---~--~~~~tpa~i~~~l~~ 375 (398)
+.+.. ||..-....+..|+.+.+.+|+. . ...+ |.++.+++..
T Consensus 246 ~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l-~~ev~~~Ia~ 293 (440)
T PRK14088 246 DRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL-PEEVLNFVAE 293 (440)
T ss_pred HHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHh
Confidence 66666 77642222577889888888822 2 2334 5666777764
No 147
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.2e-07 Score=97.13 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=76.5
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc------ChHHHHHHHHcCccc--------------------
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ------FSSDLQFLLLTMPSR-------------------- 295 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~~~~-------------------- 295 (398)
..-.+||||+||||||++++++|.++|.+++.+++.++. .+..+...|..+...
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg 509 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG 509 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence 344589999999999999999999999999999998874 345566666554332
Q ss_pred ---c---cchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 296 ---V---TLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 296 ---~---~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+ .+..++. +|-.... ...+|||+||+..+.|++.+.+--++.. .++.++.+-|.+|
T Consensus 510 ed~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~~f~~ei----~~~~lse~qRl~i 571 (953)
T KOG0736|consen 510 EDARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQSLFLHEI----EVPALSEEQRLEI 571 (953)
T ss_pred hhHHHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHHhhhhhc----cCCCCCHHHHHHH
Confidence 1 1111222 3333333 4678999999999999999987322222 4566666666666
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.60 E-value=3.9e-07 Score=100.95 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=49.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
++.++|++...+.+...+.....+-. .- ..+...+||+||||||||++|+++|+.+ +.+++.+++++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~-~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DP-NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CC-CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 55688999888888888865432100 00 0111258999999999999999999987 4578888887764
No 149
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.59 E-value=1.7e-07 Score=95.24 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=50.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHH--hh--hcCc-ccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYY--RR--VGRV-WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~--~~--~g~~-~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
-++|+++.++.+...+....++-... .. -+.. .+.++||+||||||||++|+++|..++.++..++++.+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 36899999998877764333321100 00 0111 13579999999999999999999999999998887765
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.57 E-value=1.7e-07 Score=103.55 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=49.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
+.|+|+++..+.+.+.+.....+-.. ...|.| +||+||||||||.+|+++|..+ ...++.+++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~-----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED-----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC-----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 46789999999888888655321100 012444 7999999999999999999998 4578888877653
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.57 E-value=1.7e-06 Score=87.55 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=48.1
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecccc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLTDI 279 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s~~ 279 (398)
..+.+++-++..++|...+...+.+ ..+..+++|||||||||++++.+++++ ++.++.+++...
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 3466788787777777777554432 123568999999999999999999887 577888887654
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.55 E-value=4.5e-07 Score=100.63 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=49.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
..|+|++...+.+.+.+.....+- .. ...+...+||+||||||||++|+++|..+ +.+++.++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 568899988888888876543210 00 01123358999999999999999999987 4688888887754
No 153
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=1.9e-07 Score=96.20 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=72.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccC----------hHHHHHHHHcC-----------cc-ccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQF----------SSDLQFLLLTM-----------PS-RVT 297 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~----------~~~L~~l~~~~-----------~~-~~~ 297 (398)
.++++||||||+|||+|++|+|+++ +..++.++..++.. ...++..+... .. ..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhh
Confidence 3679999999999999999999986 57788887654421 00111111000 00 011
Q ss_pred chhhhhhhcCCcccCCCCeEEEEecCC-C---CCCChhccCCCchhhHhhhhcCCCChHHHHHHHhh---hc-CCCHHHH
Q 048683 298 LSGLLNFIDGSWSWCGEGRIILFWTNH-K---EKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIM---EM-NGTPAEA 369 (398)
Q Consensus 298 ls~LL~~lDgl~s~~~~~vivI~TTN~-~---~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~---~~-~~tpa~i 369 (398)
...|...++.+.. ++..+|+|||. | ..++++|.+ ||..-..--+..|+.+.+.+|+.. .. -.-|.++
T Consensus 221 qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev 295 (445)
T PRK12422 221 QEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA 295 (445)
T ss_pred HHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 2223333333322 23456677765 4 457788888 886422224666787777777221 11 2335667
Q ss_pred HHHHHc
Q 048683 370 AGELAN 375 (398)
Q Consensus 370 ~~~l~~ 375 (398)
.++|+.
T Consensus 296 l~~la~ 301 (445)
T PRK12422 296 LDFLIE 301 (445)
T ss_pred HHHHHH
Confidence 776654
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.53 E-value=3e-07 Score=90.04 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=74.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---------------------
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK--------------------- 268 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~--------------------- 268 (398)
++.+.+.....+.......- ..+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 44555555555554443221 2234799999999999999999999987
Q ss_pred ---CcEEEeecccccCh----HHHHHHHHcCccc----ccchhhhhhhcCCcc-----------cCCCCeEEEEecCCCC
Q 048683 269 ---FDIYHLDLTDIQFS----SDLQFLLLTMPSR----VTLSGLLNFIDGSWS-----------WCGEGRIILFWTNHKE 326 (398)
Q Consensus 269 ---~~~~~l~~s~~~~~----~~L~~l~~~~~~~----~~ls~LL~~lDgl~s-----------~~~~~vivI~TTN~~~ 326 (398)
.+++.++.++.... +.++++....... .-.--++++.|++.. ..+....+|++||.++
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 68999999887652 3344443322111 001113333333322 1135678999999999
Q ss_pred CCChhccCCCchhh
Q 048683 327 KLDPALLRPGRMDQ 340 (398)
Q Consensus 327 ~LDpAllRpGR~D~ 340 (398)
.|-|.+.. |+-.
T Consensus 151 ~il~tI~S--Rc~~ 162 (325)
T COG0470 151 KILPTIRS--RCQR 162 (325)
T ss_pred hccchhhh--ccee
Confidence 99998886 5554
No 155
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.53 E-value=2.4e-07 Score=92.19 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=41.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...|++|+|+++.|..+...+.. +...|+||.||+|||||++|+++++.+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999888665542 2236899999999999999999988763
No 156
>PHA02244 ATPase-like protein
Probab=98.49 E-value=3e-07 Score=91.55 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=30.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
..+||+||||||||++|+++|..++.+++.++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 569999999999999999999999999998873
No 157
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.5e-06 Score=86.50 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=72.3
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCCc-------------------------EEEeecc------------------
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKFD-------------------------IYHLDLT------------------ 277 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~~-------------------------~~~l~~s------------------ 277 (398)
..+.++||+||+|+||+++|.++|+.+.+. ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 457799999999999999999999887441 3333221
Q ss_pred -----------cccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 278 -----------DIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 278 -----------~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
....-++++++......+ ..-+.||..|+.- ++++++|++|++++.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~ 174 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP----PPGTVFLLVSARIDR 174 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC----CcCcEEEEEECChhh
Confidence 011234555554432211 2337799999874 467899999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQML 358 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~il 358 (398)
|.|.+++ |+-.+ .+..++.+...+.+
T Consensus 175 LLpTI~S--Rcq~i---~~~~~~~~~~~~~L 200 (342)
T PRK06964 175 LLPTILS--RCRQF---PMTVPAPEAAAAWL 200 (342)
T ss_pred CcHHHHh--cCEEE---EecCCCHHHHHHHH
Confidence 9999998 76442 35555544444443
No 158
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.47 E-value=2.6e-07 Score=89.32 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=105.6
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD- 270 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~- 270 (398)
..+|.. .+.|.+++++++..+....+.+. .. .+.-...|+|||||||||+.+.|.|..+-.+
T Consensus 28 ~~pwve----kyrP~~l~dv~~~~ei~st~~~~----~~---------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~ 90 (360)
T KOG0990|consen 28 PQPWVE----KYRPPFLGIVIKQEPIWSTENRY----SG---------MPGLPHLLFYGPPGTGKTSTILANARDFYSPH 90 (360)
T ss_pred CCCCcc----CCCCchhhhHhcCCchhhHHHHh----cc---------CCCCCcccccCCCCCCCCCchhhhhhhhcCCC
Confidence 357866 89999999999997776555433 21 2222279999999999999999999887442
Q ss_pred -----EEEeecccccChHHHH---HHHHcCcccccch-------hhhhhhcCCcc-----------cCCCCeEEEEecCC
Q 048683 271 -----IYHLDLTDIQFSSDLQ---FLLLTMPSRVTLS-------GLLNFIDGSWS-----------WCGEGRIILFWTNH 324 (398)
Q Consensus 271 -----~~~l~~s~~~~~~~L~---~l~~~~~~~~~ls-------~LL~~lDgl~s-----------~~~~~vivI~TTN~ 324 (398)
+..+++++-...+-.+ +.|..+....+.+ -+|++-|.+.. ....+.-++.-+|+
T Consensus 91 ~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 91 PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNP 170 (360)
T ss_pred CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccC
Confidence 3334444432211111 2222222111111 13333332211 11244556688899
Q ss_pred CCCCChhccCCCchhhHhhhhcCCC---ChHHHHHH-HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGIS---HHHLYEQM-LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLH 391 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~---~~~~~~~i-l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~ 391 (398)
+..+-||++. |+.+.- +-+++ .++.-.+| ..+....+|.-..+... ..+|..+|++.|..-..
T Consensus 171 ~~ki~pa~qs--Rctrfr--f~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 171 PQKIHPAQQS--RCTRFR--FAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILK 238 (360)
T ss_pred hhhcCchhhc--ccccCC--CCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999997 777732 44554 23333444 44556677766555443 35788888887765443
No 159
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.45 E-value=1.3e-06 Score=81.76 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeeccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLTD 278 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s~ 278 (398)
+..|||+.+-.+.-+. ....+.....++. . ....+.||||+|+|||+|.+|+|++. +..++.+++.+
T Consensus 3 ~~~tFdnfv~g~~N~~-a~~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGESNEL-AYAAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTTTHH-HHHHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCcHHH-HHHHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 4568999853332222 2233333333321 1 22458999999999999999999875 56788887665
Q ss_pred ccC----------hHHHHHHHHcCc-----------c-cccchhhhhhhcCCcccCCCCeEEEEecCCCCCC---Chhcc
Q 048683 279 IQF----------SSDLQFLLLTMP-----------S-RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL---DPALL 333 (398)
Q Consensus 279 ~~~----------~~~L~~l~~~~~-----------~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L---DpAll 333 (398)
+.. ...+..-+.... . ..+...|...++.+.. .+..+||.+...|..+ +|.|.
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhh
Confidence 421 111222121110 0 0233445555555544 2334444444566654 55555
Q ss_pred CCCchhhHhhhhcCCCChHHHHHHH---hhhc-CCCHHHHHHHHHcc
Q 048683 334 RPGRMDQRAFNYLGISHHHLYEQML---IMEM-NGTPAEAAGELANS 376 (398)
Q Consensus 334 RpGR~D~l~~~~l~~~~~~~~~~il---~~~~-~~tpa~i~~~l~~~ 376 (398)
. ||.-.+.--+..|+.+.+.+|+ .... -.-|+++.++|...
T Consensus 153 S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~ 197 (219)
T PF00308_consen 153 S--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARR 197 (219)
T ss_dssp H--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHH
T ss_pred h--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh
Confidence 5 5555332356778888888882 2222 23467788888753
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.45 E-value=9.9e-07 Score=97.58 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=47.6
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
+.|+|+++..+.|...+.....+- .. ...+...+||+||||||||++|+++|+.+ ..+++.+++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc
Confidence 557888888888877775332110 00 01112348999999999999999999987 4678888887653
No 161
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.44 E-value=2.4e-07 Score=93.53 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=52.2
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
-|+|+++.|+.+...+.....+...-...+ -..|+++||+||||||||++|+++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 378999999988777654332221111111 2245889999999999999999999999999999997754
No 162
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.7e-06 Score=85.99 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=89.5
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeeccc---ccChHHHHHHHHcCc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLTD---IQFSSDLQFLLLTMP 293 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s~---~~~~~~L~~l~~~~~ 293 (398)
..+.++||+||+|+||+++|.++|..+-+ +++.+.... ...-+.++++.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34678999999999999999999998732 344443321 123455665544322
Q ss_pred cc-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHH
Q 048683 294 SR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLY 354 (398)
Q Consensus 294 ~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~ 354 (398)
.+ ..-|.||..|+.- +++.++|++|++++.|.|.++. |+-.+ .++.++.+..
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS--RCq~~---~~~~~~~~~~ 172 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP----PENTWFFLACREPARLLATLRS--RCRLH---YLAPPPEQYA 172 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--ccccc---cCCCCCHHHH
Confidence 11 3456789988885 4678999999999999999997 66652 4555655544
Q ss_pred HHHHhhhcCCCHHHHHHHH-HccccHHHHHHH
Q 048683 355 EQMLIMEMNGTPAEAAGEL-ANSAEAQVSLQG 385 (398)
Q Consensus 355 ~~il~~~~~~tpa~i~~~l-~~~~d~~~al~~ 385 (398)
.+.+.+...+++++....+ +..+++..|++-
T Consensus 173 ~~~L~~~~~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 173 LTWLSREVTMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHHHccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4445444456666644333 345666666544
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=5.9e-07 Score=95.80 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=54.4
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
..|.. .+.|.++++|++.++..+++...+.... .+....+.++|+||||||||++++++|++++..++
T Consensus 72 ~pW~e----KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 72 EPWVE----KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CchHH----HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 46866 8999999999999988888776654321 12233455899999999999999999999997764
Q ss_pred E
Q 048683 273 H 273 (398)
Q Consensus 273 ~ 273 (398)
+
T Consensus 140 E 140 (637)
T TIGR00602 140 E 140 (637)
T ss_pred H
Confidence 4
No 164
>PRK04132 replication factor C small subunit; Provisional
Probab=98.43 E-value=8.4e-07 Score=97.07 Aligned_cols=141 Identities=10% Similarity=0.051 Sum_probs=95.6
Q ss_pred ceeeC--CCCCCchHHHHHHHHhc-----CCcEEEeecccccChHHHHHHHHcCcccccc------hhhhhhhcCCccc-
Q 048683 246 YLLFG--PPGTGKSNLIASMANHL-----KFDIYHLDLTDIQFSSDLQFLLLTMPSRVTL------SGLLNFIDGSWSW- 311 (398)
Q Consensus 246 iLL~G--PPGTGKT~la~aiA~~l-----~~~~~~l~~s~~~~~~~L~~l~~~~~~~~~l------s~LL~~lDgl~s~- 311 (398)
.+..| |++.||||+|.|+|+++ +.+++++++++..+.+.+++++........+ --++++.|.+...
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 35668 99999999999999998 6689999999976677787776543221111 1133444443211
Q ss_pred ----------CCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH---H-hhhcCCCHHHHHHHHH-cc
Q 048683 312 ----------CGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---L-IMEMNGTPAEAAGELA-NS 376 (398)
Q Consensus 312 ----------~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l-~~~~~~tpa~i~~~l~-~~ 376 (398)
.+..+.+|++||.++.|.|+++. |+..+- +-++++.++...+ . .++..+++..+..... ++
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC~~i~--F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~ 722 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFR--FRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hceEEe--CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 12467899999999999999997 765532 4455555665544 1 2345677777766653 56
Q ss_pred ccHHHHHHHHHHHH
Q 048683 377 AEAQVSLQGLIKFL 390 (398)
Q Consensus 377 ~d~~~al~~l~~~l 390 (398)
+|++.|+..|..+.
T Consensus 723 GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 723 GDMRRAINILQAAA 736 (846)
T ss_pred CCHHHHHHHHHHHH
Confidence 89999998876654
No 165
>PRK08181 transposase; Validated
Probab=98.41 E-value=3.2e-07 Score=88.43 Aligned_cols=37 Identities=41% Similarity=0.688 Sum_probs=30.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
..+++|+||||||||+|+.|+|+++ |+.++.++..++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 4679999999999999999999765 677777776554
No 166
>PRK08116 hypothetical protein; Validated
Probab=98.41 E-value=5.9e-07 Score=86.63 Aligned_cols=70 Identities=26% Similarity=0.421 Sum_probs=44.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
..+|++....++... ....+..+..+ +.... ....|++|+||||||||+||.|+|+++ +.+++.++.+++
T Consensus 81 ~~tFdnf~~~~~~~~-a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 81 NSTFENFLFDKGSEK-AYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred hcchhcccCChHHHH-HHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 347777664444432 23333333322 11111 224679999999999999999999986 778888876654
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.40 E-value=1.6e-06 Score=77.26 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=64.2
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcC-----------------------CcEEEeecccc---cChHHHHHHHHcCcc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLK-----------------------FDIYHLDLTDI---QFSSDLQFLLLTMPS 294 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~-----------------------~~~~~l~~s~~---~~~~~L~~l~~~~~~ 294 (398)
..+..+||+||+|+||+++|.++|+.+- -+++.++.... ...++++++......
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 3467899999999999999999999763 24566655443 245667766654432
Q ss_pred c-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccC
Q 048683 295 R-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 295 ~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllR 334 (398)
. ...+.||..|+.. ++.+++|++|+.++.|-|.++.
T Consensus 97 ~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT
T ss_pred HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh
Confidence 2 4456788888886 3578999999999999999997
No 168
>PRK09087 hypothetical protein; Validated
Probab=98.39 E-value=1.5e-06 Score=81.65 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=85.3
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+......+|++.+..+.-.. ....+..+. + ...+.+.|+||+|+|||+|++++|+..+..++... .+
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~-a~~~l~~~~---------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~ 78 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRA-AVSLVDHWP---------N-WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EI 78 (226)
T ss_pred CCCCCCCChhceeecCchHH-HHHHHHhcc---------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hc
Confidence 34455568999875321111 222332211 1 11234899999999999999999998877655542 21
Q ss_pred cChHHHHHHHH------cCcc-cccchhhhhhhcCCcccCCCCeEEEEecC-CCC---CCChhccCCCchhhHhhhhcCC
Q 048683 280 QFSSDLQFLLL------TMPS-RVTLSGLLNFIDGSWSWCGEGRIILFWTN-HKE---KLDPALLRPGRMDQRAFNYLGI 348 (398)
Q Consensus 280 ~~~~~L~~l~~------~~~~-~~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~---~LDpAllRpGR~D~l~~~~l~~ 348 (398)
.. ..+..+.. +... ......|...++.+.. .+..+|+|++ .|. ...|+|.. ||.....-.+..
T Consensus 79 ~~-~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~ 152 (226)
T PRK09087 79 GS-DAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGE 152 (226)
T ss_pred ch-HHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCC
Confidence 10 01111000 0000 0112334444444433 2334555554 343 23678887 776533235677
Q ss_pred CChHHHHHHHh---hhcCC-CHHHHHHHHHcc--ccHHHHH
Q 048683 349 SHHHLYEQMLI---MEMNG-TPAEAAGELANS--AEAQVSL 383 (398)
Q Consensus 349 ~~~~~~~~il~---~~~~~-tpa~i~~~l~~~--~d~~~al 383 (398)
|+.+.+.+++. ...++ -|.++.++|+++ ++...++
T Consensus 153 pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 153 PDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence 88888888722 22222 356677777643 4444433
No 169
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.39 E-value=3.2e-07 Score=82.61 Aligned_cols=39 Identities=31% Similarity=0.587 Sum_probs=34.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCC----cEEEeecccccC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKF----DIYHLDLTDIQF 281 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~----~~~~l~~s~~~~ 281 (398)
...+||.||+|||||.+|+++|..+.. +++.++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 446899999999999999999999996 999999998876
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.39 E-value=5.2e-07 Score=75.45 Aligned_cols=37 Identities=35% Similarity=0.575 Sum_probs=31.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc---EEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD---IYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~---~~~l~~s~~ 279 (398)
++.++|+||||||||++++++|..+... ++.++++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 3568999999999999999999999886 888877654
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.4e-07 Score=95.57 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=75.9
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCc----ccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeecccccC
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV----WKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQF 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~~ 281 (398)
..|+|+++..+.+.+.+.... .|.. |-..+||.||+|+|||.||+++|..+. -.++.+|+|+...
T Consensus 491 ~rViGQd~AV~avs~aIrraR--------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR--------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 557899988888888886443 2322 223589999999999999999999997 8899999998865
Q ss_pred hHHHHHHHHcCccc-------------------------------ccchhhhhhhcCCcccCC-------CCeEEEEecC
Q 048683 282 SSDLQFLLLTMPSR-------------------------------VTLSGLLNFIDGSWSWCG-------EGRIILFWTN 323 (398)
Q Consensus 282 ~~~L~~l~~~~~~~-------------------------------~~ls~LL~~lDgl~s~~~-------~~vivI~TTN 323 (398)
.-.+.+++..-+.. .+++-||+.||.-.-..+ .+.|||||||
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 44454444332221 566778888874221112 3469999999
No 172
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.37 E-value=5.2e-07 Score=91.23 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=58.0
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcC-cccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-------C
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGR-VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-------F 281 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-------~ 281 (398)
.|+|+++.|+.+...+....++...-..... ..++++||+||||||||++|+++|+.++.+++.++++.+. +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998777543222111111111 1257899999999999999999999999999999987553 1
Q ss_pred -hHHHHHHHHcC
Q 048683 282 -SSDLQFLLLTM 292 (398)
Q Consensus 282 -~~~L~~l~~~~ 292 (398)
++.++.++..+
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 34455555544
No 173
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-06 Score=90.95 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=87.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----CcEEEeecccccCh--
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK----FDIYHLDLTDIQFS-- 282 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~----~~~~~l~~s~~~~~-- 282 (398)
.+++-.+..|++..+....+ +.....+||+||+|||||.|++++++++- +.+..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45555566666555432222 23345699999999999999999999985 34556778777422
Q ss_pred HHHH----HHHHcC----ccc------------------------ccchhhhhhh-cCCcccCCCCeEEEEecCCCCCCC
Q 048683 283 SDLQ----FLLLTM----PSR------------------------VTLSGLLNFI-DGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 283 ~~L~----~l~~~~----~~~------------------------~~ls~LL~~l-Dgl~s~~~~~vivI~TTN~~~~LD 329 (398)
..++ ..|..+ ++- ..+..+|+.+ +.+.. .+..+.+|+|.+..+.|.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~-~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK-RNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc-cCcEEEEEEechhhhhcC
Confidence 2222 222221 110 2233344322 22222 234468899999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|-|..|++|+..+ -++.|+...|.+|
T Consensus 556 ~~L~s~~~Fq~~~--~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 556 PLLVSPLLFQIVI--ALPAPAVTRRKEI 581 (952)
T ss_pred hhhcCccceEEEE--ecCCcchhHHHHH
Confidence 9999999999976 6788888888888
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=7e-06 Score=81.14 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=65.5
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeecc--cccChHHHHHHHHcCccc
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLT--DIQFSSDLQFLLLTMPSR 295 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s--~~~~~~~L~~l~~~~~~~ 295 (398)
.+.++||+||+|+||+++|.++|+.+.+ +++.+... ....-+.++++......+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4678999999999999999999998743 24444331 112345566554332211
Q ss_pred -------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 296 -------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 296 -------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
...+.||..|+.- ++.+++|++|++++.|.|.++. |+-.
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC~~ 160 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RCQT 160 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hceE
Confidence 3456788888884 4678999999999999999997 6555
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.5e-06 Score=81.23 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=83.2
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC---------------------cEEEee--cccc-------cChHHHHHHHH
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF---------------------DIYHLD--LTDI-------QFSSDLQFLLL 290 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~---------------------~~~~l~--~s~~-------~~~~~L~~l~~ 290 (398)
..+.++||+||+|+||+++|.++|+.+-+ +++.+. ...- ..-+.++++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34678999999999999999999987632 244442 2110 12344555543
Q ss_pred cCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCCh
Q 048683 291 TMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHH 351 (398)
Q Consensus 291 ~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~ 351 (398)
..... ...+.||..|+.- +.++++|++|+.++.|-|.++. |+..+- +..|+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS--RCq~i~---~~~~~~ 174 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS--RCQRLE---FKLPPA 174 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh--hheEee---CCCcCH
Confidence 22211 3456688888875 3567899999999999999998 776633 444544
Q ss_pred HHHHHHHhhhcCCCHHHHHHHH-HccccHHHHHHH
Q 048683 352 HLYEQMLIMEMNGTPAEAAGEL-ANSAEAQVSLQG 385 (398)
Q Consensus 352 ~~~~~il~~~~~~tpa~i~~~l-~~~~d~~~al~~ 385 (398)
+...+.+.. ..+++.+....+ +..+.+..|++-
T Consensus 175 ~~~~~~L~~-~~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 175 HEALAWLLA-QGVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHHHHHHH-cCCChHHHHHHHHHcCCCHHHHHHH
Confidence 433333433 356666544433 344556555543
No 176
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.33 E-value=2.7e-06 Score=87.87 Aligned_cols=173 Identities=12% Similarity=0.191 Sum_probs=92.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLTDI 279 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s~~ 279 (398)
+.+|++.+-.+.-. .....+..+...+ |. ..++++||||+|||||+|++|+++++ +..++.+++.++
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Cc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888876433322 2233343333322 21 23579999999999999999999965 467777876654
Q ss_pred cCh---------HHHHHHHHcCccc---------------ccchhhhhhhcCCcccCCCCeEEEEecCCC-C---CCChh
Q 048683 280 QFS---------SDLQFLLLTMPSR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK-E---KLDPA 331 (398)
Q Consensus 280 ~~~---------~~L~~l~~~~~~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~-~---~LDpA 331 (398)
... ..+.+......+. .+...|...++.+.. .+..||+|+|.+ + .+++.
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~---~~k~iIltsd~~P~~l~~l~~r 259 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE---NDKQLFFSSDKSPELLNGFDNR 259 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH---cCCcEEEECCCCHHHHhhccHH
Confidence 210 1111111111110 122233333443332 223567777744 3 35677
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHHHh---hhcC---CCHHHHHHHHHc--cccHHHHHHHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQMLI---MEMN---GTPAEAAGELAN--SAEAQVSLQGLIKFL 390 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~il~---~~~~---~tpa~i~~~l~~--~~d~~~al~~l~~~l 390 (398)
|.. ||..-+..-+..|+.+.+.+|+. .... .-+.++.++|.. .+|++.....+...+
T Consensus 260 L~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 260 LIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred HHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 776 77653322467778888888822 2211 234556666654 467776655555544
No 177
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=1.9e-06 Score=82.15 Aligned_cols=69 Identities=17% Similarity=0.359 Sum_probs=44.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
...+|++.....+-.+.+...+..+...- . ....+++|+||||||||+||.|||+++ +..++.++..++
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~---~----~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADEL---M----TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHH---H----hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 34578877644333333434443333211 1 123689999999999999999999998 566776666554
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.29 E-value=2.7e-06 Score=76.35 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=47.2
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeecccccChHHHHH
Q 048683 211 LALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQFSSDLQF 287 (398)
Q Consensus 211 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~~~~~L~~ 287 (398)
|+|.....+++++.+...... +..+|++|++||||+.+|++|-+... .||+.++|+.+. .+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~-~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP-EELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh-cchhhh
Confidence 456666667777777655443 36799999999999999999999764 699999999884 334444
Q ss_pred HHH
Q 048683 288 LLL 290 (398)
Q Consensus 288 l~~ 290 (398)
.++
T Consensus 69 ~LF 71 (168)
T PF00158_consen 69 ELF 71 (168)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 179
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.29 E-value=2e-06 Score=85.56 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=38.7
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.|+.|+|+++.|..+.-.+.. +...++|+.||||||||+++++++..+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 478899999999887544431 123579999999999999999999877
No 180
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.27 E-value=8.1e-07 Score=84.41 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=50.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
...+.+|++.....+..+.+...+..+..+. . ....+++|+||||||||+|+.|+|+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 5567899998765544444555555555321 1 113589999999999999999999998 67777777665
Q ss_pred c
Q 048683 279 I 279 (398)
Q Consensus 279 ~ 279 (398)
+
T Consensus 138 l 138 (244)
T PRK07952 138 I 138 (244)
T ss_pred H
Confidence 5
No 181
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.25 E-value=2.8e-06 Score=84.23 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=54.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC--CcEEEeecccccC----
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK--FDIYHLDLTDIQF---- 281 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~--~~~~~l~~s~~~~---- 281 (398)
.+-++|+.+.++..--.++ .++. |+-..|++||.||||||||.+|-+||+++| .||+.++.+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHH-HHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 4678999999887644444 3322 233468999999999999999999999997 8999999999864
Q ss_pred -hHHHHHHHHcC
Q 048683 282 -SSDLQFLLLTM 292 (398)
Q Consensus 282 -~~~L~~l~~~~ 292 (398)
...|.+.|..+
T Consensus 95 KTE~L~qa~Rra 106 (398)
T PF06068_consen 95 KTEALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHHCS
T ss_pred chHHHHHHHHHh
Confidence 23466667654
No 182
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.18 E-value=6.1e-06 Score=86.63 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=74.5
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCc--ccccceeeCCCCCCchHHHHHHHHhcCCcEEEe----ecccccChH
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRV--WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHL----DLTDIQFSS 283 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~--~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l----~~s~~~~~~ 283 (398)
+|.|.+.+|..+.-.+ +.+-.....-|.. ..-.+||+|+||||||++++++++......+.. ++..+.. .
T Consensus 204 ~i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-A 279 (509)
T ss_pred cccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-c
Confidence 4677777776664333 2211110011111 112599999999999999999999876443322 1111100 0
Q ss_pred HHHH-----------HHHcCcc------------cccchhhhhhhcC---------CcccCCCCeEEEEecCCCC-----
Q 048683 284 DLQF-----------LLLTMPS------------RVTLSGLLNFIDG---------SWSWCGEGRIILFWTNHKE----- 326 (398)
Q Consensus 284 ~L~~-----------l~~~~~~------------~~~ls~LL~~lDg---------l~s~~~~~vivI~TTN~~~----- 326 (398)
.++. .+..+.+ ....+.|+..|+. ....-+....||+|+|..+
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~ 359 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDP 359 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCC
Confidence 0000 0000000 0333445555542 1111224568899999653
Q ss_pred --------CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 --------KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 --------~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.|+|+++. |||.+.. .++.|+.+...+|
T Consensus 360 ~~~~~~n~~l~~~lLs--RFdLi~~-~~d~~~~~~d~~i 395 (509)
T smart00350 360 KLTPEENIDLPAPILS--RFDLLFV-VLDEVDEERDREL 395 (509)
T ss_pred CcChhhccCCChHHhC--ceeeEEE-ecCCCChHHHHHH
Confidence 69999999 9999431 3455665555555
No 183
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.18 E-value=1.6e-05 Score=81.93 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...+||+||||||||++|+++|...+
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhc
Confidence 45699999999999999999999775
No 184
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.8e-05 Score=79.54 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=102.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc-----EEEeecccccChH
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD-----IYHLDLTDIQFSS 283 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~-----~~~l~~s~~~~~~ 283 (398)
+.+.+-+++...+...+..++.+. .|.++++|||||||||.+++-+++++.-+ ++.++|....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 447888888888888877666532 23459999999999999999999998654 8899988776543
Q ss_pred HH-HHHHHcC---ccc-------------------ccchhhhhhhcCCcccC--------------CCCeEEEEecCCC-
Q 048683 284 DL-QFLLLTM---PSR-------------------VTLSGLLNFIDGSWSWC--------------GEGRIILFWTNHK- 325 (398)
Q Consensus 284 ~L-~~l~~~~---~~~-------------------~~ls~LL~~lDgl~s~~--------------~~~vivI~TTN~~- 325 (398)
.+ .+++... +.. .++--.|+++|-+.... ...+.+|+.+|..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 33 2333321 221 11222444555443221 2346788888855
Q ss_pred --CCCChhccCCCchhhHhhhhcCCCChHHHHHHHh-------hhcCCCHHHHHHHHH----c-cccHHHHHHHHHHHHH
Q 048683 326 --EKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI-------MEMNGTPAEAAGELA----N-SAEAQVSLQGLIKFLH 391 (398)
Q Consensus 326 --~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~-------~~~~~tpa~i~~~l~----~-~~d~~~al~~l~~~l~ 391 (398)
+.+||-+.. |+-..-- .++.-+++-..+|+. ....+++. +.+.++ . ++|++.|++-+-.+.+
T Consensus 168 ~~~~ld~rv~s--~l~~~~I-~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 168 FLDYLDPRVKS--SLGPSEI-VFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred HHHHhhhhhhh--ccCccee-eeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 578887775 3322100 223323443444421 11223332 323332 2 4599999988877776
Q ss_pred HHHh
Q 048683 392 VKLQ 395 (398)
Q Consensus 392 ~~~~ 395 (398)
-..+
T Consensus 244 iAe~ 247 (366)
T COG1474 244 IAER 247 (366)
T ss_pred HHHh
Confidence 5543
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.15 E-value=2.5e-06 Score=83.79 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
..+|+++...+..+..+......|+... .. .+..+|++|+||||||||+|+.|+|+++ |..+..+..+++
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 4678888766644555555555555421 11 1245799999999999999999999998 677776665543
No 186
>PHA02624 large T antigen; Provisional
Probab=98.15 E-value=4.4e-05 Score=80.27 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=63.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHH-------HHcCccc-------------ccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFL-------LLTMPSR-------------VTL 298 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l-------~~~~~~~-------------~~l 298 (398)
|+|.++.+|||||||||||+++.++++.++-..+.++.+.-.+.=.|.-+ |..+... ..+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl 506 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNNL 506 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccchh
Confidence 56788899999999999999999999999666777775442222122211 1122111 123
Q ss_pred hhhhhhhcCCcccCC-----CCe-----EEEEecCCCCCCChhccCCCchhhHh
Q 048683 299 SGLLNFIDGSWSWCG-----EGR-----IILFWTNHKEKLDPALLRPGRMDQRA 342 (398)
Q Consensus 299 s~LL~~lDgl~s~~~-----~~v-----ivI~TTN~~~~LDpAllRpGR~D~l~ 342 (398)
..|-+.|||-..-+- ..+ -.|.|||. ..||..+.- ||-+.+
T Consensus 507 ~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~ 557 (647)
T PHA02624 507 DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVL 557 (647)
T ss_pred hHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhc
Confidence 456788888621111 111 36778886 567878776 777744
No 187
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.13 E-value=6.5e-06 Score=88.57 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=37.3
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.|..|+|++.+|..+.-... ++ ...|+||.||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~---------~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DP---------RIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CC---------CCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 47899999888876643332 11 12479999999999999999999988
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.8e-06 Score=84.11 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=81.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeec-cccc--C----hHHHHHHHHcCccc--------------------
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL-TDIQ--F----SSDLQFLLLTMPSR-------------------- 295 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~-s~~~--~----~~~L~~l~~~~~~~-------------------- 295 (398)
-..+||+||||+|||.||..+|...++||+.+-. .+.. + -..+.+.|..+-..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 3569999999999999999999999999998743 3332 1 12356667665443
Q ss_pred -----ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh--HhhhhcCCCChHH---HHHHHhhhcCCC
Q 048683 296 -----VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ--RAFNYLGISHHHL---YEQMLIMEMNGT 365 (398)
Q Consensus 296 -----~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~--l~~~~l~~~~~~~---~~~il~~~~~~t 365 (398)
.++..|+..+...... +...+|++||... .+++ +|++ ++...+.+|.-.- ..+++.+...++
T Consensus 618 PRfSN~vlQaL~VllK~~ppk-g~kLli~~TTS~~-----~vL~--~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs 689 (744)
T KOG0741|consen 618 PRFSNLVLQALLVLLKKQPPK-GRKLLIFGTTSRR-----EVLQ--EMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS 689 (744)
T ss_pred chhhHHHHHHHHHHhccCCCC-CceEEEEecccHH-----HHHH--HcCHHHhhhheeecCccCchHHHHHHHHHccCCC
Confidence 3444555555555442 3345666666654 3455 5666 3333455664332 233344455566
Q ss_pred HHHHHHHHHc--cccHHHHHHHHHHHHHHHH
Q 048683 366 PAEAAGELAN--SAEAQVSLQGLIKFLHVKL 394 (398)
Q Consensus 366 pa~i~~~l~~--~~d~~~al~~l~~~l~~~~ 394 (398)
+.++...-.+ +.-....++.+...++..+
T Consensus 690 d~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred cchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 6655433211 1113333444444444443
No 189
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.09 E-value=6.7e-06 Score=80.70 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=54.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC--CcEEEeecccccC-----
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK--FDIYHLDLTDIQF----- 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~--~~~~~l~~s~~~~----- 281 (398)
+-++|+.+.++..--.++ .++ -|.-..||+|+.||||||||.||-+||.++| .||..++.+++.+
T Consensus 39 dG~VGQ~~AReAaGvIv~-mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 39 DGLVGQEEAREAAGVIVK-MIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred CcccchHHHHHhhhHHHH-HHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 567888887775433333 222 2445578999999999999999999999997 6899999998864
Q ss_pred hHHHHHHHHc
Q 048683 282 SSDLQFLLLT 291 (398)
Q Consensus 282 ~~~L~~l~~~ 291 (398)
...|.+.|..
T Consensus 111 TE~L~qa~Rr 120 (450)
T COG1224 111 TEALTQALRR 120 (450)
T ss_pred HHHHHHHHHH
Confidence 2335555543
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=4.8e-05 Score=75.11 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=73.0
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC-----------------------cEEEeeccc---ccChHHHHHHHHcC--
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF-----------------------DIYHLDLTD---IQFSSDLQFLLLTM-- 292 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~-----------------------~~~~l~~s~---~~~~~~L~~l~~~~-- 292 (398)
..+.++||+||.|+||+++|.++|+.+.. +++.+.... ....+.++++....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 34678999999999999999999997632 455555431 12345555543322
Q ss_pred -cc----c------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHH
Q 048683 293 -PS----R------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYE 355 (398)
Q Consensus 293 -~~----~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~ 355 (398)
+. + ..-+.||..++.- ++++++|++|+.++.|-|.++. |+-.+ .+..|+.+...
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RCq~~---~~~~~~~~~~~ 173 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RCQQW---VVTPPSTAQAM 173 (319)
T ss_pred CcccCCceEEEecchhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cceeE---eCCCCCHHHHH
Confidence 11 1 3456789988885 4578999999999999999997 66552 34444444444
Q ss_pred HHH
Q 048683 356 QML 358 (398)
Q Consensus 356 ~il 358 (398)
+.+
T Consensus 174 ~~L 176 (319)
T PRK06090 174 QWL 176 (319)
T ss_pred HHH
Confidence 433
No 191
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.07 E-value=1.1e-05 Score=88.50 Aligned_cols=191 Identities=18% Similarity=0.167 Sum_probs=127.7
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcC-hhHHhhhcCcc-cc-cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNG-KEYYRRVGRVW-KR-GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~-~~~~~~~g~~~-~r-giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
..|.. .+.|.....+.+.......+.+.+...-+. +..|...+... .. .+|++||||.|||+.+.++|.++|+
T Consensus 308 ~~~~~----k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~ 383 (871)
T KOG1968|consen 308 AGWTE----KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF 383 (871)
T ss_pred ccccc----ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc
Confidence 35655 778888888888887777777776655221 11222222111 12 3699999999999999999999999
Q ss_pred cEEEeecccccChHHHHHHHHcCcccc------------------cchhhhhhhcCCcccCC------------CCeEEE
Q 048683 270 DIYHLDLTDIQFSSDLQFLLLTMPSRV------------------TLSGLLNFIDGSWSWCG------------EGRIIL 319 (398)
Q Consensus 270 ~~~~l~~s~~~~~~~L~~l~~~~~~~~------------------~ls~LL~~lDgl~s~~~------------~~vivI 319 (398)
.+++.+.++..+...+.+.+..+.... -..-|+++.||+..... ..+-||
T Consensus 384 ~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv 463 (871)
T KOG1968|consen 384 KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLV 463 (871)
T ss_pred ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCCeE
Confidence 999999999987777766655443321 11225677777765111 224688
Q ss_pred EecCCCCCCCh-hccCCCchhhHhhhhcCCCCh-HHHHHH----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHHH
Q 048683 320 FWTNHKEKLDP-ALLRPGRMDQRAFNYLGISHH-HLYEQM----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLHV 392 (398)
Q Consensus 320 ~TTN~~~~LDp-AllRpGR~D~l~~~~l~~~~~-~~~~~i----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~~ 392 (398)
+|+|..+--.. ++.|.+ +|. ++.-|+. .++..| ..+...+++..+.++.. ..+|...++-.|..|.-.
T Consensus 464 ~~cndr~~p~sr~~~~~~-~~l----~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 464 CTCNDRNLPKSRALSRAC-SDL----RFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred EEecCCCCccccchhhhc-cee----eecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 99997776665 444422 443 5666654 455666 34566799999998885 458999999888887443
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.05 E-value=5.3e-06 Score=76.46 Aligned_cols=46 Identities=35% Similarity=0.557 Sum_probs=36.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
|++|.|++..|..+.-... | ..++||+||||||||++|+++...+.
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 7899999999988865443 2 36899999999999999999998764
No 193
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=1.2e-05 Score=79.60 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=64.3
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcC-------------------------CcEEEeeccc----------ccChHHH
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLK-------------------------FDIYHLDLTD----------IQFSSDL 285 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~-------------------------~~~~~l~~s~----------~~~~~~L 285 (398)
..+.++||+||+|+|||++|.++|+.+. -+++.++... ...-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4467899999999999999999999863 2466665421 1134556
Q ss_pred HHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 286 QFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 286 ~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
+++......+ ...+.|+..|+... .+..+|++|++++.+.|++.+ |+-.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc~~ 166 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RCRK 166 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hhhh
Confidence 6554433211 33455777777652 346788899999999999987 6555
No 194
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.01 E-value=1e-05 Score=80.22 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
.+++||||||||||+|+.|+|+++ |..++.++..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 789999999999999999999987 677887776654
No 195
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.99 E-value=3.9e-06 Score=70.22 Aligned_cols=31 Identities=39% Similarity=0.743 Sum_probs=28.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
|++.||||+|||++|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999999888765
No 196
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.91 E-value=4.6e-05 Score=75.58 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=54.2
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChH
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSS 283 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 283 (398)
.+++++|....-+.+++.+...... ...+|++|+|||||+++|+++-... +.+|+.++|..+. +.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-EN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC-HH
Confidence 4678999998888888888766432 3569999999999999999997665 3689999999874 33
Q ss_pred HHHH
Q 048683 284 DLQF 287 (398)
Q Consensus 284 ~L~~ 287 (398)
.+..
T Consensus 72 ~~~~ 75 (326)
T PRK11608 72 LLDS 75 (326)
T ss_pred HHHH
Confidence 3443
No 197
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.90 E-value=9.6e-06 Score=71.93 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.1
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.+..++|+||||||||++++++|+.+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4567999999999999999999999999999765
No 198
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.89 E-value=1.9e-05 Score=82.69 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=50.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-CCcEEEeec
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDL 276 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~ 276 (398)
+-.-|+++.|.++.++.|.+.+.....+- + ..++-++|.||||+|||+||+++|+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 33458999999999999998885444321 1 123457899999999999999999987 367887754
No 199
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.89 E-value=5.7e-05 Score=76.44 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=96.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC-----CcEEEeec
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK-----FDIYHLDL 276 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~-----~~~~~l~~ 276 (398)
.....||++++..+.-.... .....+-..+ |. ..+.++||||.|.|||+|++|++++.. ..++.++.
T Consensus 80 l~~~ytFdnFv~g~~N~~A~-aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAY-AAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHHHH-HHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 45566899977655543332 2222222222 11 345689999999999999999999873 34556655
Q ss_pred ccccC----------hHHHHHHHHcC------------cccccchhhhhhhcCCcccCCCCeEEEEec-CCCCC---CCh
Q 048683 277 TDIQF----------SSDLQFLLLTM------------PSRVTLSGLLNFIDGSWSWCGEGRIILFWT-NHKEK---LDP 330 (398)
Q Consensus 277 s~~~~----------~~~L~~l~~~~------------~~~~~ls~LL~~lDgl~s~~~~~vivI~TT-N~~~~---LDp 330 (398)
.+... ..++++.+ .. ....+...|...+..+.. .+.-||+|+ ..|.. ++|
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~---~~kqIvltsdr~P~~l~~~~~ 227 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE---NGKQIVLTSDRPPKELNGLED 227 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHh---cCCEEEEEcCCCchhhccccH
Confidence 44310 01111111 10 011223333333333333 222455555 45554 558
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHHHh---hhcC-CCHHHHHHHHHcc-----ccHHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQMLI---MEMN-GTPAEAAGELANS-----AEAQVSLQGLIKF 389 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~il~---~~~~-~tpa~i~~~l~~~-----~d~~~al~~l~~~ 389 (398)
.|.. ||+..+...+..|+.+.+-.|+. +..+ .-|.++.+++.++ .+.+.|++.|..+
T Consensus 228 rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~ 293 (408)
T COG0593 228 RLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAF 293 (408)
T ss_pred HHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 8888 99985545778899999988832 2233 3467888888753 3444455544443
No 200
>PRK06526 transposase; Provisional
Probab=97.87 E-value=7.7e-06 Score=78.28 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=28.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
+.+++|+||||||||+++.+++.++ |+.++..+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~ 136 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ 136 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence 4679999999999999999998875 55555554443
No 201
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.3e-05 Score=75.03 Aligned_cols=66 Identities=23% Similarity=0.526 Sum_probs=45.0
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
..+.++-+.+...+.....+..+.. +|. -+.+++||||||||||+||.|||+++ |..++.+..+++
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3445555555555554444443332 222 35789999999999999999999987 567777776665
No 202
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.81 E-value=9.1e-05 Score=78.30 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
...+|+.++|.....+.+++.+..... ....+||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345789999999999988888876543 23569999999999999999999875 5699999999874
No 203
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.80 E-value=2.1e-05 Score=81.05 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=56.5
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
...|.. .+.|.+.++|+-...-..++.+++..+.... ..-..+-+||+||+|||||+.++.||+++|+.+
T Consensus 69 ~elW~e----Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 69 FELWVE----KYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred cchhHH----hcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 457865 8999999999999887777777776222211 011234578999999999999999999999998
Q ss_pred EEee
Q 048683 272 YHLD 275 (398)
Q Consensus 272 ~~l~ 275 (398)
++-.
T Consensus 139 ~Ew~ 142 (634)
T KOG1970|consen 139 IEWS 142 (634)
T ss_pred eeec
Confidence 8765
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.80 E-value=7.8e-05 Score=80.45 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=51.8
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeecccccC
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQF 281 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~~ 281 (398)
+|++++|.....+.+.+.+...... ...+||+|+|||||+++|++|.+... .||+.++|..+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 5888888888777777777655432 34699999999999999999988754 6999999998753
No 205
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.79 E-value=3.4e-05 Score=65.60 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=42.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..|.|++-.++.|.+.+..++.++. -..|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999987641 1112334599999999999999999985
No 206
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.78 E-value=4.2e-05 Score=81.67 Aligned_cols=97 Identities=22% Similarity=0.148 Sum_probs=62.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC--cEEEeeccccc----ChHHHHHHH------------HcCcc-----------
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF--DIYHLDLTDIQ----FSSDLQFLL------------LTMPS----------- 294 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~--~~~~l~~s~~~----~~~~L~~l~------------~~~~~----------- 294 (398)
.++||.|+||||||++|+++++.++. +|+.+...... +.-++...+ ..+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998764 57777642211 111111111 11110
Q ss_pred -cccchhhhhhhcC---------CcccCCCCeEEEEecCCCC---CCChhccCCCchhhHh
Q 048683 295 -RVTLSGLLNFIDG---------SWSWCGEGRIILFWTNHKE---KLDPALLRPGRMDQRA 342 (398)
Q Consensus 295 -~~~ls~LL~~lDg---------l~s~~~~~vivI~TTN~~~---~LDpAllRpGR~D~l~ 342 (398)
..+.+.|+..|+. .....+....||+|+|..+ .|.++|+. ||+..+
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v 155 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHV 155 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCee
Confidence 0455667777753 1111234568889999776 79999998 898833
No 207
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.77 E-value=8.2e-05 Score=70.20 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=71.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc--------------ccchhh---h---
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR--------------VTLSGL---L--- 302 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~--------------~~ls~L---L--- 302 (398)
..|-.++||+|||||.+++++|+.+|.+++..++++-.+...+.+++.++... .+++.+ +
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i 111 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQSI 111 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999988888888888765443 112111 1
Q ss_pred -hhhc---------CCcccCCCCeEEEEecC----CCCCCChhccCCCchhhHhhhhcCCCChHHHHHH-HhhhcCCCHH
Q 048683 303 -NFID---------GSWSWCGEGRIILFWTN----HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM-LIMEMNGTPA 367 (398)
Q Consensus 303 -~~lD---------gl~s~~~~~vivI~TTN----~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-l~~~~~~tpa 367 (398)
+.+. |-.-....+.-+++|.| ....||+.|.. +=|- -.+..||....-++ |....-..+.
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRp--vam~~PD~~~I~ei~L~s~GF~~a~ 186 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRP--VAMMVPDLSLIAEILLLSQGFKDAK 186 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEE--EE--S--HHHHHHHHHHCCCTSSHH
T ss_pred HHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---Hhhe--eEEeCCCHHHHHHHHHHHcCchhHH
Confidence 1111 10000112234556666 34578877654 1111 13567888888888 5555556666
Q ss_pred HHHHHH
Q 048683 368 EAAGEL 373 (398)
Q Consensus 368 ~i~~~l 373 (398)
+++.-+
T Consensus 187 ~La~kl 192 (231)
T PF12774_consen 187 SLAKKL 192 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 208
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.75 E-value=0.00014 Score=72.19 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=43.4
Q ss_pred ccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 212 ALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 212 ~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
+|....-+.+.+.+..... ....+||.|+|||||+++|++|.... +.||+.++|..+.
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4555555666666654432 23569999999999999999997765 4699999998774
No 209
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=5.7e-05 Score=73.31 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=35.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
+.++||.||.|+|||.||+.+|+.++.||..-+++.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLT 134 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLT 134 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchh
Confidence 45699999999999999999999999999999988874
No 210
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=2.2e-05 Score=70.37 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=29.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.+++.||||+|||++|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998874
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.71 E-value=1.7e-05 Score=71.85 Aligned_cols=37 Identities=32% Similarity=0.769 Sum_probs=28.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
+.|++|+||||||||+||.|+|+++ |.+++.++.+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 4689999999999999999999876 677777776554
No 212
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.70 E-value=0.00014 Score=75.12 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=54.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
.....+|++|+|....-.++++.++..- +....+|+.|.+||||..+|++|-+.. +-||+.++|..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 3456789999999888777776665433 234679999999999999999998887 57999999988
Q ss_pred c
Q 048683 279 I 279 (398)
Q Consensus 279 ~ 279 (398)
+
T Consensus 307 i 307 (560)
T COG3829 307 I 307 (560)
T ss_pred C
Confidence 7
No 213
>PRK06921 hypothetical protein; Provisional
Probab=97.70 E-value=4.8e-05 Score=73.33 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=30.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~~ 279 (398)
..+++|+||||||||+|+.|||+++ +..++.+...++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 4689999999999999999999986 566777765443
No 214
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.67 E-value=0.00011 Score=74.26 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTDI 279 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~~ 279 (398)
....+++++|....-+++++.++.+ . +....+|++|++||||+.+|++|.... +.||+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-------a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-------A----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-------C----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3446899999998888888888752 1 224569999999999999999887543 569999999999
Q ss_pred cChHHHHHHHH
Q 048683 280 QFSSDLQFLLL 290 (398)
Q Consensus 280 ~~~~~L~~l~~ 290 (398)
..+....++|.
T Consensus 142 ~en~~~~eLFG 152 (403)
T COG1221 142 SENLQEAELFG 152 (403)
T ss_pred CcCHHHHHHhc
Confidence 87666656553
No 215
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.66 E-value=0.00012 Score=77.23 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=53.6
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHh-----------cCCcEEEe
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANH-----------LKFDIYHL 274 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~-----------l~~~~~~l 274 (398)
.+|++++|.....+.+++.+..+-.. ...+|++|+|||||+++|++|-+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999999888888887655432 357999999999999999999887 46799999
Q ss_pred eccccc
Q 048683 275 DLTDIQ 280 (398)
Q Consensus 275 ~~s~~~ 280 (398)
+|..+.
T Consensus 285 nCaal~ 290 (538)
T PRK15424 285 NCGAIA 290 (538)
T ss_pred ecccCC
Confidence 999875
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=7e-05 Score=73.25 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=52.1
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 211 LALDSELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 211 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
|+|+++.|+.+--.+..-.++...-..+. --.|+++|+.||.|+|||.+|+-+|+-.++||+.+.++.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 68999999887665544333322222222 1247899999999999999999999999999999998765
No 217
>PRK13947 shikimate kinase; Provisional
Probab=97.66 E-value=3.6e-05 Score=68.52 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=29.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.++|.||||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999998763
No 218
>PRK03839 putative kinase; Provisional
Probab=97.64 E-value=3.4e-05 Score=69.53 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=28.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.|+||+|||++++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999998875
No 219
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.64 E-value=3.7e-05 Score=66.88 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=28.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|+||||+|||++++.+|..+++++++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999999876
No 220
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.63 E-value=0.0036 Score=56.77 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=94.6
Q ss_pred eEEEEcccCCccchhHHHHHHHHhccCCC-cccccceeeeccC----------------------CCCceEEecCCCCeE
Q 048683 52 ITIVIKEFLGLIINQVFEATHLYLGDRTT-TSSAKRLRVGKSE----------------------KEKTFRTTLDRNEEM 108 (398)
Q Consensus 52 ~t~~i~e~~~~~~n~~y~a~~~YL~t~~~-~~~~~rl~~~~~~----------------------~~~~~~~~~~~~~~v 108 (398)
.|+.|+.. +++|+.+-.+|+.... ..+ +++.+.... +.+.+.+.+..| ..
T Consensus 27 ~sv~I~~~-----D~~Y~~lm~Wls~q~~~~~~-r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 27 SSVEIPSD-----DEAYDWLMRWLSSQPFSKRS-RHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEECCC-----CHHHHHHHHHHhhCCccccc-ceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 46666653 4899999999997644 334 677665522 356788999999 88
Q ss_pred EEeecCeeeEEEEEEeecCCCccccCCCcccccccccCccceEEEEEcCcchhHHHHHHHHHHHHHhHHHHhcCceEEEE
Q 048683 109 VDVFEDVTLKWKLICTQVPLSVEYINPDLEDHNASLRSEVRHYELSFHKKHTDTVLNLYLPHVLKKAKAVKEDCNTVKLH 188 (398)
Q Consensus 109 ~D~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~ 188 (398)
...|+| .|..+.++.. +...+.. . ..+.+.++|++..+.++ +|+.+|.+..+... +.+.....||
T Consensus 100 ~F~y~G---~~~~~~R~~~--~~~~~~~----~---~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy 164 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRE--SNSYNSW----T---GAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIY 164 (187)
T ss_pred EEEECC---EEEEEEEEec--ccccccc----C---CCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEE
Confidence 889999 7888888764 3222211 0 23477899999998764 67777766655543 3445567899
Q ss_pred ecCCcc--eecccccccCCCCcccc
Q 048683 189 TVLRNC--WDANNVVLQHAMTFKDL 211 (398)
Q Consensus 189 ~~~~~~--w~~~~~~~~~p~~f~~l 211 (398)
...+.. |.. +...+++.+++|
T Consensus 165 ~~~~~~~~W~~--~~~r~~RplsTV 187 (187)
T PF08740_consen 165 RADGSEYRWRR--VASRPKRPLSTV 187 (187)
T ss_pred eCCCCCCCCcC--CCCcCCCCCCCC
Confidence 998776 998 666677777765
No 221
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00027 Score=68.75 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC----------------cEEEeeccc---ccChHHHHHHHHcCccc------
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF----------------DIYHLDLTD---IQFSSDLQFLLLTMPSR------ 295 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------------~~~~l~~s~---~~~~~~L~~l~~~~~~~------ 295 (398)
..+.+|||+||+|+||+.+|.++|..+-+ +++.+.... ...-+.++++.....-+
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34678999999999999999999988743 344443221 12334444443332111
Q ss_pred -------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 296 -------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 296 -------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
...+.||..|+.. ++++++|+.|+.++.|.|.++. |+-.
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rcq~ 148 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RSLS 148 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cceE
Confidence 3456788888885 4678999999999999999986 5555
No 222
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.61 E-value=2.8e-05 Score=66.80 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=25.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.||||+|||++|+.++..++..+++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~ 30 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQ 30 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeH
Confidence 68999999999999999999999555443
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.61 E-value=9.5e-05 Score=63.80 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=38.6
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC---cEEEeecccc
Q 048683 213 LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF---DIYHLDLTDI 279 (398)
Q Consensus 213 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~---~~~~l~~s~~ 279 (398)
|.....+.+++.+...... ...+|++|+|||||+++|+++....+. +++.+++...
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~ 60 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL 60 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC
Confidence 3445556677777655432 356999999999999999999998764 5566666554
No 224
>PRK00625 shikimate kinase; Provisional
Probab=97.60 E-value=4.3e-05 Score=68.92 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.++|.|+||+|||++++.+|+.+++++++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 37899999999999999999999999999873
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=97.60 E-value=3.8e-05 Score=73.71 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=29.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
..+++|+||||||||+++.++|..+ |..+..++..++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 4579999999999999999997764 667766665544
No 226
>PRK13949 shikimate kinase; Provisional
Probab=97.57 E-value=5e-05 Score=68.18 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=30.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+.++|.||||+|||++++.+|+.+++++++++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 358999999999999999999999999999873
No 227
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.57 E-value=0.00014 Score=79.08 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
...|++++|.....+.+.+.+...... ...+|++|+||||||++|++|.... +.+++.++|..+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 357899999999999998888765432 3579999999999999999998865 5799999998763
No 228
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=5.3e-05 Score=77.25 Aligned_cols=48 Identities=33% Similarity=0.480 Sum_probs=39.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
...|.||.|++..|+.+.-.. ...+++||+||||||||++|+-+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999998875443 235789999999999999998887765
No 229
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.55 E-value=5.9e-05 Score=65.71 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=33.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHH
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
-.+|+.|-||||||+++..+|..++++.|.++ ++..+.++..-+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is--d~vkEn~l~~gy 51 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLVKENNLYEGY 51 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh--hHHhhhcchhcc
Confidence 46999999999999999999999999988764 443333443333
No 230
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.001 Score=63.60 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=63.5
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC----------------------cEEEeeccc-ccChHHHHHHHHc---Cc-
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF----------------------DIYHLDLTD-IQFSSDLQFLLLT---MP- 293 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~----------------------~~~~l~~s~-~~~~~~L~~l~~~---~~- 293 (398)
..+.++||+||+|+||..+|.++|..+-+ +++.+.... -...++++++... .+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 35678999999999999999999987632 233332211 1123444444332 11
Q ss_pred ----cc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 294 ----SR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 294 ----~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
.+ ...+.||..++.- +...++|++|+.++.|.|.++. |+-+
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--RCq~ 141 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--RCVQ 141 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--heee
Confidence 11 3456688888874 4678999999999999999997 6554
No 231
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.51 E-value=7.4e-05 Score=67.21 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.||||+|||++|+.+|..+++..+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999999766654
No 232
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.49 E-value=0.00029 Score=74.25 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=58.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
...+|++++|.....+.+.+.+..+-.. ...+|++|++||||+++|++|.+.. +.||+.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999999888888888755432 3579999999999999999998764 5799999999874
Q ss_pred ChHHHHHHHH
Q 048683 281 FSSDLQFLLL 290 (398)
Q Consensus 281 ~~~~L~~l~~ 290 (398)
. ..+...++
T Consensus 276 e-~lleseLF 284 (526)
T TIGR02329 276 E-SLLEAELF 284 (526)
T ss_pred h-hHHHHHhc
Confidence 3 33444443
No 233
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00021 Score=71.98 Aligned_cols=38 Identities=34% Similarity=0.514 Sum_probs=35.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
+.++||.||.|+|||.||+.+|.-++.||...+|+.+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLT 263 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLT 263 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchh
Confidence 45799999999999999999999999999999998873
No 234
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.47 E-value=0.00019 Score=76.96 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=42.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.+|..|++++|+++.++.+...+.. ++.+||+||||||||++++++|+.+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3467899999999888877654431 247999999999999999999998863
No 235
>PRK14532 adenylate kinase; Provisional
Probab=97.47 E-value=8.8e-05 Score=67.21 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=26.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.||||+|||++++.+|+.+|++.++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 78999999999999999999999887765
No 236
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.47 E-value=0.00022 Score=76.47 Aligned_cols=50 Identities=34% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
.-+++++|.++.++.+...+. .+++++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 457889999888877665553 12478999999999999999999999754
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=0.00013 Score=70.59 Aligned_cols=47 Identities=34% Similarity=0.570 Sum_probs=30.8
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc---EEEeecccccChHHHHHHH
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD---IYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~---~~~l~~s~~~~~~~L~~l~ 289 (398)
.+.+||.||+|||||++++..-..+.-. ...+.++...+...+++++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~i 82 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKII 82 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCC
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHH
Confidence 4679999999999999998766555432 3345555444445555444
No 238
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.46 E-value=9.2e-05 Score=64.46 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=26.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.||||+|||++++.+++.++..+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 579999999999999999999988776543
No 239
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=9e-05 Score=66.58 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=29.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
+++.|+||+|||++|+.++..++.+++.++.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 78999999999999999999999998887643
No 240
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.46 E-value=6.5e-05 Score=72.19 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=47.3
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC--CcEEEeecccccC
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK--FDIYHLDLTDIQF 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~--~~~~~l~~s~~~~ 281 (398)
+-++|+...++.. ..+...++.+ .-..|++||.||||||||.+|-||++++| .||+.+..+++.+
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 4467887777643 2222233322 12368899999999999999999999996 6888888888764
No 241
>PRK13948 shikimate kinase; Provisional
Probab=97.45 E-value=0.00011 Score=66.83 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=32.2
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.++.++|.|+||+|||++++.+|+.+++++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34678999999999999999999999999999887
No 242
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=9.6e-05 Score=66.92 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=28.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-|++.|+||+|||++++++|+.+++++++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3889999999999999999999999988876
No 243
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.45 E-value=0.00022 Score=71.66 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.7
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.+.++|+.||||+|+|||+|.-+..+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 467899999999999999999999888764
No 244
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.44 E-value=8.4e-05 Score=66.61 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+.+.|.|++|+||||+.+++|+.++++|++.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 468999999999999999999999999999873
No 245
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.43 E-value=0.00063 Score=68.57 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...|.-+.|++..|..|.-... .+.-.|+|+-|+.|||||++++|+|.-|.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCC
Confidence 3467888999999887754322 13346899999999999999999999884
No 246
>PRK14531 adenylate kinase; Provisional
Probab=97.43 E-value=0.00011 Score=66.61 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=27.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+-+++.||||+|||++++.+|+.+|++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3489999999999999999999999887664
No 247
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.43 E-value=0.0001 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=28.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.+.|+||+|||++|+.+|..+++++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999999887
No 248
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.43 E-value=0.00061 Score=71.67 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=52.7
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
.+++++|.....+.+.+.+...-. ....+||+|++||||+++|++|.... +.+++.++|..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 568899999888888888875443 24579999999999999999998875 4799999999874
No 249
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.41 E-value=0.00084 Score=64.27 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=73.4
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-CCc--------
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-KFD-------- 270 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~-------- 270 (398)
+..+.|.+++.+.+..+....+..... .. . --.+|+|||+|+||-+.+.++-+++ |.-
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~-----~~-------d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSS-----TG-------D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcc-----cC-------C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 348899999999988877776654332 10 0 1258999999999999998888775 311
Q ss_pred --------------------EEEeecccccChHH--HHHHHHcCccc---------ccchhhhhhhcCCcccC-------
Q 048683 271 --------------------IYHLDLTDIQFSSD--LQFLLLTMPSR---------VTLSGLLNFIDGSWSWC------- 312 (398)
Q Consensus 271 --------------------~~~l~~s~~~~~~~--L~~l~~~~~~~---------~~ls~LL~~lDgl~s~~------- 312 (398)
-+++++|+.+..++ +++++.+++.. ...--++++-|.+....
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRT 150 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRT 150 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHH
Confidence 22344445443332 34555544432 11111334444332111
Q ss_pred ----CCCeEEEEecCCCCCCChhccC
Q 048683 313 ----GEGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 313 ----~~~vivI~TTN~~~~LDpAllR 334 (398)
....-+|+.+|....|-+++..
T Consensus 151 MEkYs~~~RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 151 MEKYSSNCRLILVCNSTSRIIEPIRS 176 (351)
T ss_pred HHHHhcCceEEEEecCcccchhHHhh
Confidence 1234588899999999999986
No 250
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.41 E-value=0.00012 Score=64.76 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+++.||||+|||++++.+++.++..+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCc
Confidence 578999999999999999999997776543
No 251
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.41 E-value=0.00012 Score=66.33 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=27.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+++.||||+|||++++.+|+.+++..+.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 789999999999999999999998877653
No 252
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.00013 Score=61.65 Aligned_cols=43 Identities=30% Similarity=0.549 Sum_probs=32.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc--------CCcEEEeecccccChHHHH
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL--------KFDIYHLDLTDIQFSSDLQ 286 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l--------~~~~~~l~~s~~~~~~~L~ 286 (398)
+.++++||||+|||++++.++..+ ..+++.+++....+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFA 55 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHH
Confidence 568899999999999999999988 7888888877665444443
No 253
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0024 Score=62.63 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=62.2
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC-------------cEEEee--cccccChHHHHHHHHcC---c----cc----
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF-------------DIYHLD--LTDIQFSSDLQFLLLTM---P----SR---- 295 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~-------------~~~~l~--~s~~~~~~~L~~l~~~~---~----~~---- 295 (398)
....|||+|+.|.||+.++.++|+.+.+ +++.++ ... ...++++++.... + .+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEE
Confidence 4578999999999999999999988721 233443 222 2335565554432 1 11
Q ss_pred ---------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 296 ---------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 296 ---------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
...+.||..|+.. ++..++|++|+.++.|-|++.. |+-.
T Consensus 96 I~~~e~m~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc~~ 143 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RCQV 143 (299)
T ss_pred EecccccCHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--CeEE
Confidence 2345688888885 4567888888888999999887 5444
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0011 Score=71.96 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=99.9
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEEeec
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDL 276 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~ 276 (398)
.+|.++|-++..+.+++.+.+. .+++-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 5788899888888887777532 34667899999999999999999865 567899998
Q ss_pred cccc--------ChHHHHHHHHcCcccccchhhhhhhcCC------cccC---------------CCCeEEEEecCC---
Q 048683 277 TDIQ--------FSSDLQFLLLTMPSRVTLSGLLNFIDGS------WSWC---------------GEGRIILFWTNH--- 324 (398)
Q Consensus 277 s~~~--------~~~~L~~l~~~~~~~~~ls~LL~~lDgl------~s~~---------------~~~vivI~TTN~--- 324 (398)
..+. .+..+..++....... ..+-|||.+ .+.. ..+.-+|++|..
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~---~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSK---NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCC---CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 7763 4667777776655432 122233321 1110 123445555542
Q ss_pred --CCCCChhccCCCchhhHhhhhcCCCChHHHHHH---------HhhhcCCCHHHHHHHH-H------ccccHHHHHHHH
Q 048683 325 --KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---------LIMEMNGTPAEAAGEL-A------NSAEAQVSLQGL 386 (398)
Q Consensus 325 --~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---------l~~~~~~tpa~i~~~l-~------~~~d~~~al~~l 386 (398)
.=.=|+||-| ||..+ +++-|+.+.--.| ...++.++..-+.+.. + .+--|++|++-+
T Consensus 312 Rk~iEKD~AL~R--RFQ~V---~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLi 386 (786)
T COG0542 312 RKYIEKDAALER--RFQKV---LVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLL 386 (786)
T ss_pred HHHhhhchHHHh--cCcee---eCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHH
Confidence 1245999999 99884 4677765544444 1234456665554333 1 123455665554
Q ss_pred HHHH
Q 048683 387 IKFL 390 (398)
Q Consensus 387 ~~~l 390 (398)
-++-
T Consensus 387 DeA~ 390 (786)
T COG0542 387 DEAG 390 (786)
T ss_pred HHHH
Confidence 4443
No 255
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.39 E-value=0.00057 Score=72.04 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
...+|++++|....-+.+++.+...... ...+||+|++||||+++|+++-... +.||+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457999999988777787777654331 3469999999999999999986554 3689999998875
No 256
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.37 E-value=0.0003 Score=69.30 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 213 LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 213 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.+++.++.+.+.++..+.... -..++..+.|.|+||+|||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445555666666655444221 2344567999999999999999999999999999766
No 257
>PHA00729 NTP-binding motif containing protein
Probab=97.35 E-value=9.7e-05 Score=69.21 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=24.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
.++++||||||||++|.++|+.++..+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 69999999999999999999998644433
No 258
>PRK13946 shikimate kinase; Provisional
Probab=97.35 E-value=0.00014 Score=66.07 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=31.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
++.++|.|+||+|||++++.+|+.+|+++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4579999999999999999999999999998874
No 259
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.33 E-value=0.00018 Score=64.73 Aligned_cols=34 Identities=38% Similarity=0.682 Sum_probs=30.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
++.++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999998874
No 260
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.30 E-value=0.00019 Score=63.87 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.++|.|+||+|||++++.+|+.+|+++++.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 47899999999999999999999999998763
No 261
>PRK14530 adenylate kinase; Provisional
Probab=97.26 E-value=0.00022 Score=66.30 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=27.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
.+++.||||+|||++++.+|..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999888755
No 262
>PHA02774 E1; Provisional
Probab=97.26 E-value=0.00037 Score=73.23 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=30.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEE-ee
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYH-LD 275 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~-l~ 275 (398)
|+|.+++++||||||||||+++.+|++.++-.++. ++
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 55667889999999999999999999999755544 44
No 263
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00068 Score=74.53 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=47.1
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcC-cccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGR-VWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
+.|+|+++....|-+.+.....+ ++. .+.-.+||.||.|+|||-||+|+|..+ .-.++.+++++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 35678888888887777644321 112 233458999999999999999999998 34688898886
No 264
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00018 Score=64.31 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=27.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+++.|.||||||++++.++ ++|++.+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6889999999999999999 9999988876
No 265
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.23 E-value=0.00021 Score=65.79 Aligned_cols=22 Identities=50% Similarity=0.874 Sum_probs=17.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777666655
No 266
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.23 E-value=0.00019 Score=59.39 Aligned_cols=23 Identities=43% Similarity=0.842 Sum_probs=20.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
|.||||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999887764
No 267
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0042 Score=60.59 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=62.3
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeeccc-ccChHHHHHHHHcCccc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLTD-IQFSSDLQFLLLTMPSR 295 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s~-~~~~~~L~~l~~~~~~~ 295 (398)
..+.+|||+|| +||+++|.++|..+.+ +++.+.... ...-+.++++.......
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34678999996 6899999999986532 333443321 12345566554433221
Q ss_pred -------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 296 -------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 296 -------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
..-+.||..++.- +.+.++|++|+.++.|-|.++. |+-.
T Consensus 100 p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rcq~ 157 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RTQI 157 (290)
T ss_pred cccCCcEEEEeehhhhcCHHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--ccee
Confidence 3456788888885 3568999999999999999997 6655
No 268
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.001 Score=60.73 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
++-++|.||||+|||++++.+.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568899999999999999998876
No 269
>PRK14528 adenylate kinase; Provisional
Probab=97.20 E-value=0.00026 Score=64.39 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
.+++.||||+|||++++.+|+.++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 488999999999999999999999887765
No 270
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.20 E-value=0.00082 Score=74.01 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+||.|+||||||.+++++++...
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lsp 517 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSP 517 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCC
Confidence 599999999999999999998654
No 271
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00027 Score=62.47 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=25.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+-+.||||||||++++-+|+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999987
No 272
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.20 E-value=0.00015 Score=64.81 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=26.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc---EEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD---IYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~---~~~l~~s~~ 279 (398)
++.++++||||+|||+++++++..+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5779999999999999999888777544 777776655
No 273
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.19 E-value=0.00028 Score=63.48 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-+++.||||+|||++++.+|+++|+..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478899999999999999999998876655
No 274
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.00026 Score=63.94 Aligned_cols=29 Identities=31% Similarity=0.642 Sum_probs=26.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.||||+|||++++.+|..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999887765
No 275
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.16 E-value=0.00025 Score=63.63 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+-++|.||||+|||+++++++..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 458899999999999999999998877765543
No 276
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.16 E-value=0.00031 Score=66.24 Aligned_cols=30 Identities=23% Similarity=0.559 Sum_probs=27.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.||||+|||++|+.+|+.++++.+.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 899999999999999999999998888765
No 277
>PRK06762 hypothetical protein; Provisional
Probab=97.15 E-value=0.00029 Score=62.46 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=27.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+-+++.|+||+|||++|+.+++.++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45789999999999999999999965565554
No 278
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.0004 Score=62.59 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=29.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-+++.||||+|||++++.+|+.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 456888999999999999999999998888765
No 279
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.12 E-value=0.00034 Score=64.74 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=26.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.||||+|||++|+.+|..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999887765
No 280
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.11 E-value=0.00037 Score=64.73 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=26.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
++++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999887775
No 281
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.10 E-value=0.00091 Score=61.54 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=37.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++..+-++++||||||||+++..+|... +..++.++... .+...+.++.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~ 60 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIA 60 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHH
Confidence 56666668999999999999998877543 66788888765 3455555544
No 282
>PLN02200 adenylate kinase family protein
Probab=97.09 E-value=0.00045 Score=65.31 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.-+++.||||+|||++|+.+|+++|++.+..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 34578999999999999999999999765443
No 283
>PF13245 AAA_19: Part of AAA domain
Probab=97.07 E-value=0.00062 Score=52.89 Aligned_cols=32 Identities=41% Similarity=0.650 Sum_probs=22.1
Q ss_pred ceeeCCCCCCch-HHHHHHHHhc------CCcEEEeecc
Q 048683 246 YLLFGPPGTGKS-NLIASMANHL------KFDIYHLDLT 277 (398)
Q Consensus 246 iLL~GPPGTGKT-~la~aiA~~l------~~~~~~l~~s 277 (398)
+++.|||||||| ++++.++... +..+..+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 456999999999 5555666655 4556666544
No 284
>PRK14527 adenylate kinase; Provisional
Probab=97.02 E-value=0.00043 Score=63.04 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=27.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.-++++||||+|||++++.+|+.+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 34589999999999999999999999776554
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.00067 Score=58.66 Aligned_cols=32 Identities=31% Similarity=0.603 Sum_probs=26.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
++++||||+|||+++..++... +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5899999999999999998887 4566666554
No 286
>PRK04182 cytidylate kinase; Provisional
Probab=96.99 E-value=0.00054 Score=61.05 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=27.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.|+||+|||++++.+|+.+++++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 67999999999999999999999998874
No 287
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.99 E-value=0.00053 Score=63.42 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=27.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
-+++.||+|||||.++-++|+..|.|++.+|.-.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47899999999999999999999999999985443
No 288
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.98 E-value=0.00091 Score=69.94 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=33.5
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.|.++.|....++.+.- .......++|+||||||||++++.++..+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 67777777655544311 112345699999999999999999998764
No 289
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.98 E-value=0.00043 Score=60.52 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=23.6
Q ss_pred eeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 248 LFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 248 L~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.||||+|||++|+.||+.+|+..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765554
No 290
>PRK01184 hypothetical protein; Provisional
Probab=96.98 E-value=0.00056 Score=61.72 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-++|.||||+|||++++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 36789999999999887 889999988776
No 291
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.0015 Score=74.00 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=39.4
Q ss_pred CcccccceeeCCCCCCchHH-HHHHHHhcCCcEEEeecccccChHHHHHHH
Q 048683 240 RVWKRGYLLFGPPGTGKSNL-IASMANHLKFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~l-a~aiA~~l~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
....|+|+++||||+|||++ +.++-+++...++.++.+.-...+.....+
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~L 1541 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVL 1541 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHH
Confidence 34579999999999999985 679999999999999987665555444444
No 292
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.94 E-value=0.00064 Score=60.11 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.++|+||+|||++++.+|+.+++++++.+
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 678999999999999999999999988753
No 293
>PRK04040 adenylate kinase; Provisional
Probab=96.94 E-value=0.00067 Score=61.99 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=26.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc--CCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL--KFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l--~~~~~~l 274 (398)
+-++++|+||||||++++.+++.+ +++++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 457899999999999999999999 6666544
No 294
>PTZ00202 tuzin; Provisional
Probab=96.93 E-value=0.0034 Score=64.16 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHH
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSD 284 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~ 284 (398)
|....+..|-+.....+...+.. .....++-+.|.||+|||||++++.++..++.+.+.+++. ...+-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC--CHHHH
Confidence 44466778877777777655531 1222345578999999999999999999999888888877 33444
Q ss_pred HHHHHHcC
Q 048683 285 LQFLLLTM 292 (398)
Q Consensus 285 L~~l~~~~ 292 (398)
++.++...
T Consensus 326 Lr~LL~AL 333 (550)
T PTZ00202 326 LRSVVKAL 333 (550)
T ss_pred HHHHHHHc
Confidence 55555443
No 295
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.93 E-value=0.0031 Score=65.02 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=44.2
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
+..+++....-..+.+.+..... ....+|++|++||||+++|+++.... +.+++.+++..+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 34456655555555555543332 23469999999999999999997764 4799999998874
No 296
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.92 E-value=0.0023 Score=63.53 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=48.0
Q ss_pred cc-ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-CCcEEEeecccc
Q 048683 208 FK-DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDLTDI 279 (398)
Q Consensus 208 f~-~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~s~~ 279 (398)
|+ ++.|.++..+++++.+...-.+- -.-++-++|.||+|+|||++++.+.+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~-------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGL-------EERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhcc-------CccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 44 89999999999888776443321 2234567899999999999999998877 457777754433
No 297
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.91 E-value=0.0023 Score=57.90 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=22.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+-++|.||+|+||+++++.++.+.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 568999999999999999999986
No 298
>PLN02199 shikimate kinase
Probab=96.90 E-value=0.0015 Score=63.54 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=31.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.+.++|.|++|+|||++++.+|+.+|+++++.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4579999999999999999999999999999873
No 299
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.90 E-value=0.0027 Score=72.75 Aligned_cols=37 Identities=30% Similarity=0.554 Sum_probs=34.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
.+++||-|.||+|||+++.|+|++.|-.++.+++++-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ 1579 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ 1579 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc
Confidence 4789999999999999999999999999999998863
No 300
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.89 E-value=0.00073 Score=65.77 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=25.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc-CCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL-KFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l 274 (398)
.-+++.||||||||++|+.+++.+ ++.+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 347899999999999999999999 6655543
No 301
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.88 E-value=0.00049 Score=57.51 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
|+|.|+||||||++|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999997
No 302
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.87 E-value=0.00055 Score=60.57 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
|.|.|+||||||+|++++++. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999999 88866
No 303
>PRK06696 uridine kinase; Validated
Probab=96.87 E-value=0.0025 Score=59.60 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=31.0
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
+.-|.+.|+||+|||++|+.||..+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3447789999999999999999998 6778877665554
No 304
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0008 Score=60.99 Aligned_cols=30 Identities=47% Similarity=0.823 Sum_probs=24.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.+++.||||+||||+|+.||+.++ +..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 378999999999999999999955 445543
No 305
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.86 E-value=0.0056 Score=62.95 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=48.4
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHH
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSD 284 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 284 (398)
+..+++.....+.+.+.+..... ....++++|++||||+++|+++.... +.+++.++|..+. +..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~-~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP-ENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC-hHH
Confidence 44566666666666655543221 23568999999999999999998775 4689999999874 334
Q ss_pred HHHHH
Q 048683 285 LQFLL 289 (398)
Q Consensus 285 L~~l~ 289 (398)
+...+
T Consensus 206 ~~~~l 210 (445)
T TIGR02915 206 LESEL 210 (445)
T ss_pred HHHHh
Confidence 44443
No 306
>PF13173 AAA_14: AAA domain
Probab=96.85 E-value=0.00098 Score=56.66 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=31.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC--CcEEEeeccccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK--FDIYHLDLTDIQ 280 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~--~~~~~l~~s~~~ 280 (398)
+.++|+||+|+|||++++.+++.+. ..++.+++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 4578999999999999999998876 777888777653
No 307
>PRK06851 hypothetical protein; Provisional
Probab=96.85 E-value=0.0057 Score=61.53 Aligned_cols=73 Identities=27% Similarity=0.481 Sum_probs=47.4
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHHHcCcccccchhhhhhhcCCcccCCCCeEE
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLLLTMPSRVTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~~~~~~~~~ls~LL~~lDgl~s~~~~~viv 318 (398)
..+-++|.|+||||||++++.+++.+ |+++-.+-++.- + +.+||+-- ++-.+-
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d--~--------------------~slDgvii--p~l~~a 84 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD--N--------------------DSLDGVII--PELKIA 84 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC--C--------------------CceeeEEe--cCCCEE
Confidence 35668999999999999999998887 344333322211 0 24566543 233455
Q ss_pred EEecCCCCCCChhccCCCchhh
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~ 340 (398)
|+..+.|..+||. +||=.|.
T Consensus 85 ivDgtaph~~~P~--~pgav~e 104 (367)
T PRK06851 85 ILDGTAPHVVDPK--APGAVEE 104 (367)
T ss_pred EEcCCCcCcCCCC--CCCcceE
Confidence 6666688888884 6776665
No 308
>PRK14526 adenylate kinase; Provisional
Probab=96.84 E-value=0.00086 Score=62.45 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=25.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
++|.||||+|||++++.+|..++++.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999877655
No 309
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.83 E-value=0.0011 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999996
No 310
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.82 E-value=0.001 Score=67.49 Aligned_cols=92 Identities=21% Similarity=0.376 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHh-------cC------ceEEEEec---CCcceecccccccCCCCccccccChHHHHHHHH
Q 048683 160 TDTVLNLYLPHVLKKAKAVKE-------DC------NTVKLHTV---LRNCWDANNVVLQHAMTFKDLALDSELKKMIIK 223 (398)
Q Consensus 160 ~~~vl~~yl~~v~~~~~~~~~-------~~------~~~~~~~~---~~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~ 223 (398)
...-++.+...++++++.... .+ +..++--. -+..|.-..+.---..++++-..++.+++.|.+
T Consensus 182 ~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~EITavRPvvk~~ledY~L~dkl~eRL~e 261 (604)
T COG1855 182 TREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPPFSDRWEITAVRPVVKLSLEDYGLSDKLKERLEE 261 (604)
T ss_pred CHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCCCCCceEEEEEeeeEEechhhcCCCHHHHHHHHh
Confidence 334577888888877765421 11 11111111 123555422222223478888888888887754
Q ss_pred HHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 224 DLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 224 ~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
. .+|+|+.||||.|||++|+|+|..+..
T Consensus 262 r------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 262 R------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred h------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 3 369999999999999999999998753
No 311
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.81 E-value=0.0023 Score=59.65 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=35.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|.+. +.+++.++... .+...+.++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~-~~~~r~~~~~ 71 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEG-LSPERFKQIA 71 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCHHHHHHHH
Confidence 45555668999999999999999888744 67788887762 2334444433
No 312
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.80 E-value=0.022 Score=60.88 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=82.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhc----------CCcEEEeecccccChHHHHHHHHcC----------------------
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDLTDIQFSSDLQFLLLTM---------------------- 292 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~s~~~~~~~L~~l~~~~---------------------- 292 (398)
.+.+.|-||||||.++..+-+++ .+++++++.-.+.+..++-..+...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 46788999999999999998865 3788888877665433322211111
Q ss_pred -cccccchhhhhhhcCCcc-------------c-CCCCeEEEEecCCCCCCChhccC---CCchhhHhhhhcCCCChHHH
Q 048683 293 -PSRVTLSGLLNFIDGSWS-------------W-CGEGRIILFWTNHKEKLDPALLR---PGRMDQRAFNYLGISHHHLY 354 (398)
Q Consensus 293 -~~~~~ls~LL~~lDgl~s-------------~-~~~~vivI~TTN~~~~LDpAllR---pGR~D~l~~~~l~~~~~~~~ 354 (398)
+.+.+.--|++++|-+.. . .+...+||+..|+.+. +.-++- ..|++.---+|-+. .|.-.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pY-th~qL 581 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPY-THEQL 581 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC-HHHHhccchhhhccceeeecCCC-CHHHH
Confidence 111222235555554433 1 1244566777776553 333331 12444311123333 45555
Q ss_pred HHH----HhhhcCCCHHHHHHHH-----HccccHHHHHHHHHHHHHHHHhhc
Q 048683 355 EQM----LIMEMNGTPAEAAGEL-----ANSAEAQVSLQGLIKFLHVKLQAT 397 (398)
Q Consensus 355 ~~i----l~~~~~~tpa~i~~~l-----~~~~d~~~al~~l~~~l~~~~~~~ 397 (398)
.+| |.....+.+.-++ +. +-++|++.|++-.-.+.|-+.++.
T Consensus 582 q~Ii~~RL~~~~~f~~~aie-lvarkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 582 QEIISARLKGLDAFENKAIE-LVARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHHHhhcchhhcchhHHH-HHHHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 555 3333344444332 22 236899999998888887766553
No 313
>PRK06851 hypothetical protein; Provisional
Probab=96.78 E-value=0.007 Score=60.87 Aligned_cols=69 Identities=28% Similarity=0.349 Sum_probs=46.8
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHHHcCcccccchhhhhhhcCCcccCCCCeEE
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLLLTMPSRVTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~~~~~~~~~ls~LL~~lDgl~s~~~~~viv 318 (398)
..+-|+|.||||||||++++.++.++ |+++....|+.- + +.||++-- ++-.+-
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d--P--------------------dslD~viI--Pel~~a 268 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD--P--------------------DSLDMVII--PELNFA 268 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC--C--------------------CCcceEEe--ccCCEE
Confidence 34669999999999999999999887 666666665532 1 12444432 233466
Q ss_pred EEecCCCCCCChhccCCC
Q 048683 319 LFWTNHKEKLDPALLRPG 336 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpG 336 (398)
|+..+.|..+||. +||
T Consensus 269 i~d~t~ph~~~P~--~~g 284 (367)
T PRK06851 269 IFDSTAPHEYFPS--REG 284 (367)
T ss_pred EEeCCCCcccCCC--CCc
Confidence 7777777777774 455
No 314
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.77 E-value=0.0021 Score=59.55 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=30.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|++..+-++++||||+|||+++..+|.+. +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555568999999999999999888765 5677777654
No 315
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.71 E-value=0.0029 Score=59.13 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=35.5
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-+.++||||||||+++..+|... +..++.++..+-....++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 45555558999999999999999887543 2567777765533445555544
No 316
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.69 E-value=0.0015 Score=57.31 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=25.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5789999999999999999998 66666665
No 317
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0021 Score=64.85 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+..++|.||+|+|||+++..+|..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998764
No 318
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.68 E-value=0.0023 Score=60.99 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999976
No 319
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.67 E-value=0.0014 Score=56.47 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
..-++|.|+.|+|||++++++++.++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458899999999999999999999864
No 320
>PLN02674 adenylate kinase
Probab=96.67 E-value=0.0014 Score=62.26 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=27.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
...++|.||||+||++.++.+|+.+++..+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 34589999999999999999999999766554
No 321
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.66 E-value=0.0014 Score=62.23 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=26.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
++|.|+||+|||++|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 5799999999999999999987 466666653
No 322
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.66 E-value=0.0025 Score=63.87 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=32.2
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
|+|.++.+++||||+||||+++-.+-+.++-.++..
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf 293 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 293 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe
Confidence 778889999999999999999999999999887774
No 323
>PRK08233 hypothetical protein; Provisional
Probab=96.66 E-value=0.0016 Score=58.10 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=25.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC-CcEEEeecc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK-FDIYHLDLT 277 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~-~~~~~l~~s 277 (398)
+.+.|+||+||||+|+.+|..++ ..++..+..
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 56789999999999999999985 445555433
No 324
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.66 E-value=0.00068 Score=63.46 Aligned_cols=23 Identities=39% Similarity=0.792 Sum_probs=20.3
Q ss_pred cccceeeCCCCCCchHHHHHHHH
Q 048683 243 KRGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~ 265 (398)
+.-+|+||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34599999999999999999975
No 325
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.65 E-value=0.0018 Score=58.10 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=25.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
+|++||||||||+++..++.+. |.+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998776643 5677766654
No 326
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.64 E-value=0.0014 Score=59.39 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-+.|.||+|+||||+++.++...+.+++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~ 33 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVA 33 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEc
Confidence 478999999999999999999988765543
No 327
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0023 Score=56.29 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=39.2
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMP 293 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~ 293 (398)
+.+-.+++.|+.|+|||+++++++++++++|++- .++...++..++-.+.+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~NveKM~~Gip 60 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVEKMTQGIP 60 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHHHHhcCCC
Confidence 3444678899999999999999999999998765 45666666666655443
No 328
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.62 E-value=0.0089 Score=61.93 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=50.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHH
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSD 284 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 284 (398)
+.+++|.....+.+.+.+..... ....+|+.|++||||+++|+++.... +.+++.++|..+. ...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HHH
Confidence 45677777666666655543221 23569999999999999999998886 4699999998883 334
Q ss_pred HHHHH
Q 048683 285 LQFLL 289 (398)
Q Consensus 285 L~~l~ 289 (398)
+...+
T Consensus 205 ~~~~l 209 (469)
T PRK10923 205 IESEL 209 (469)
T ss_pred HHHHh
Confidence 44443
No 329
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.58 E-value=0.0019 Score=59.53 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
.-+++.|+||+|||++++.+|..+++..
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4578999999999999999999998765
No 330
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.58 E-value=0.0018 Score=68.69 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=29.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+.|.|+||+|||++.+.+|+.++++|++++.
T Consensus 9 i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 9 AVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 7899999999999999999999999999984
No 331
>PRK14529 adenylate kinase; Provisional
Probab=96.56 E-value=0.0014 Score=61.50 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
++|.||||+|||+.++.+|..++++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987764
No 332
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.55 E-value=0.0018 Score=62.10 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=40.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
.+.+++++.......+.+.+.+....+ ....+|+.||+|+|||++.+++..++...
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhcccc
Confidence 345788888877666666655543322 24679999999999999999999988544
No 333
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.54 E-value=0.0018 Score=60.36 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.2
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~ 278 (398)
|++...-+|+.||||||||+++..++... |-+++.++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 56666779999999999999988765433 77888777543
No 334
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.54 E-value=0.0044 Score=60.88 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-++++||||+|||+++..+|... +-.++.++..+--+..++.+++.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 45555668899999999999999887663 23677777665434556655543
No 335
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.53 E-value=0.0028 Score=59.53 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=31.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s 277 (398)
|++.+..++++||||||||+++..++.+ .+.+++.++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5666777999999999999999998655 36777777764
No 336
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.51 E-value=0.0021 Score=57.94 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=26.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.++|+||+|||++++.+++ +|+++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 898888765
No 337
>PF05729 NACHT: NACHT domain
Probab=96.50 E-value=0.0017 Score=56.53 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=21.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
|-++++|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 347899999999999999998876
No 338
>PLN02459 probable adenylate kinase
Probab=96.49 E-value=0.0025 Score=61.12 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
.++|.||||+|||++++.+|+.++++.+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 378899999999999999999999776654
No 339
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.49 E-value=0.013 Score=60.59 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=51.1
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccccc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQ 280 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~ 280 (398)
.+..++|.....+++.+.+...-. ..-.+|++|++||||-.+|++|-.... .||+.++|..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip 204 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP 204 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC
Confidence 456788888888888877764433 235699999999999999999988875 599999999884
No 340
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.49 E-value=0.012 Score=57.36 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecccc
Q 048683 220 MIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLTDI 279 (398)
Q Consensus 220 ~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s~~ 279 (398)
++.+.++..+..|. ..-..++||+|++|.|||++++..+.... .|++.+.+..-
T Consensus 44 ~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 44 EALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred HHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 44466666666552 12245799999999999999999987542 46777765543
No 341
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.48 E-value=0.0092 Score=61.46 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=52.8
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
..+..|+|......++.+.++..-.. .-.||+.|.+||||..+|++|-... +.||+.+||..+-
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 46788999998888888888744432 3469999999999999999998887 4799999998873
No 342
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.47 E-value=0.0027 Score=60.89 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=29.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s 277 (398)
|++...-+|++||||||||+++..+|.. .|.+++.++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4555666899999999999999876553 35677777654
No 343
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.47 E-value=0.003 Score=59.65 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=30.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s~ 278 (398)
|++....+|++||||||||+++..++.+ .|-+.+.++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6677777999999999999998765543 366777777554
No 344
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.46 E-value=0.0052 Score=56.40 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=25.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
+-.++.||||||||+++++++..+ +..++-+..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 457889999999999998876554 66777776654
No 345
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.43 E-value=0.0033 Score=57.92 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=23.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
|....-.++|.|+-|+|||++++.|+.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 4444455789999999999999999766
No 346
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.43 E-value=0.0054 Score=56.99 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=36.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---C------CcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---K------FDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~------~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-+.++||||+|||+++..+|... + ..++.++..+......+.+++.
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 45556668999999999999999887653 2 5667777655434455555543
No 347
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.43 E-value=0.0038 Score=56.10 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=30.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
+|+.||||+|||++|..+|..++.+++.+......
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 78999999999999999999998888777655543
No 348
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.41 E-value=0.0033 Score=60.09 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|.+..+.+|++|+||||||+++..++... |.+++.++..+- ..++.+.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 56777779999999999999987665543 677888876653 44454444
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.41 E-value=0.0057 Score=63.01 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 216 ELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
.+.+.+.+.+...+.......... ..|.-++|+||||+|||+++..+|..+ |..+..+++..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 344555555555554322111111 346679999999999999999998876 45566555543
No 350
>PRK05973 replicative DNA helicase; Provisional
Probab=96.40 E-value=0.0033 Score=59.52 Aligned_cols=40 Identities=23% Similarity=0.016 Sum_probs=29.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|.+...-+|+.|+||+|||+++-.+|.+. |.+++.+++.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 45555568999999999999887665543 77776666543
No 351
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.40 E-value=0.0026 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999986
No 352
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=96.38 E-value=0.0036 Score=66.31 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=35.9
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+|.+.+++|+-+.-.+ |=.....+...| ...--++||+|.||||||-+.+.+++-+..
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR 488 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR 488 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc
Confidence 4566777777664332 222222223222 111234999999999999999999987743
No 353
>PRK13808 adenylate kinase; Provisional
Probab=96.38 E-value=0.0024 Score=63.28 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=26.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
++|+||||+|||+++..||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999999876665
No 354
>PRK13764 ATPase; Provisional
Probab=96.37 E-value=0.003 Score=67.31 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=23.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
++++|+.||||+|||++++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998875
No 355
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.37 E-value=0.0051 Score=55.50 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHH
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFL 288 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l 288 (398)
-+.+.||+|+|||+++++++..++..+ ++...+.....++.+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~--i~gd~~~~~~~~r~~ 46 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKF--IDGDDLHPAKNIDKM 46 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEE--ECCcccCCHhHHHHH
Confidence 478999999999999999999998753 444444443344443
No 356
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.36 E-value=0.0062 Score=60.09 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=37.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-++++||||||||.++..+|... +..++.++...--+...+.++..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 46656668899999999999999887653 33677777665434556665543
No 357
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0036 Score=56.00 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.-+.|.|+||+|||++++++|..+ +..+..++.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 357899999999999999999987 344555544
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.34 E-value=0.0036 Score=61.38 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=23.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
++++|+.||+|+|||+++++++++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 359
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.32 E-value=0.0025 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+++.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3689999999999999999998764
No 360
>PLN02165 adenylate isopentenyltransferase
Probab=96.32 E-value=0.0028 Score=62.80 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=30.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
.-+.|.||+|+|||+++..+|..++..+++.+.-.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Q 78 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQ 78 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChhe
Confidence 34789999999999999999999998888776543
No 361
>PRK12338 hypothetical protein; Provisional
Probab=96.32 E-value=0.003 Score=62.30 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
|.-+++.|+||||||++|+++|..+|+..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 456889999999999999999999998654
No 362
>PRK15115 response regulator GlrR; Provisional
Probab=96.29 E-value=0.016 Score=59.54 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
..++++|++||||+++|+++.... +.+++.++|..+.
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~ 197 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP 197 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC
Confidence 468999999999999999998875 4799999998873
No 363
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.28 E-value=0.0035 Score=57.51 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=30.1
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhc-CCcEEEeeccccc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDLTDIQ 280 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~s~~~ 280 (398)
..|.-+++.||||+|||+++..+...+ +-.++.++...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 346678999999999999999999988 7778888876653
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.27 E-value=0.0096 Score=57.61 Aligned_cols=60 Identities=23% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCh-hHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 217 LKKMIIKDLDIFRNGK-EYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
+.+.+.+.+...+..- ..+. .....++-++|.||||+|||+++..+|..+ |..+.-+++.
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~-~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELI-VEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred HHHHHHHHHHHHHcccchhhc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3444555555444331 1111 112334668889999999999999888766 5555555543
No 365
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.26 E-value=0.003 Score=56.18 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.7
Q ss_pred eCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 249 FGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 249 ~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.||||+|||++++++|..++..+++-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999998766654
No 366
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.25 E-value=0.0035 Score=57.57 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=27.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.++|+||+|||++++.+++.+|+++++.+
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 679999999999999999999899988765
No 367
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.23 E-value=0.0029 Score=56.80 Aligned_cols=22 Identities=36% Similarity=0.828 Sum_probs=19.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
++|.|+||+||||+++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 368
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.23 E-value=0.0038 Score=61.43 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=31.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+-+++.||+|+|||++|..+|.+++..++..|.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 457899999999999999999999998887776443
No 369
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.22 E-value=0.0032 Score=65.99 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=35.8
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..|+++.|....++.+.-.+ .....++|+||||||||+++++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999887766543222 123569999999999999999999754
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.22 E-value=0.0091 Score=58.03 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc----C-CcEEEeeccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL----K-FDIYHLDLTD 278 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l----~-~~~~~l~~s~ 278 (398)
++.++|.||+|+|||+++..+|..+ + ..+..++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3458899999999999999998866 3 5666666543
No 371
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.20 E-value=0.0051 Score=57.79 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.5
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~ 278 (398)
|.++..-+++.||||+|||+++..+|... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 56666668999999999999988776654 77888877654
No 372
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.18 E-value=0.0039 Score=56.93 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=24.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhc-CCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHL-KFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l-~~~~~~l~ 275 (398)
+.+.|+||+|||++|+.+++.+ +..++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 4678999999999999999998 55555544
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.18 E-value=0.0061 Score=60.31 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCh-hHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 216 ELKKMIIKDLDIFRNGK-EYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
.+++.+.+.+...+... ..+. .....+.-++|.||||+|||+++..+|..+ +..+.-++
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34555665665555421 1111 112234558899999999999999998876 34444444
No 374
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.18 E-value=0.0094 Score=55.53 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=30.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++...-+++.||||+|||.++..+|.+. +.+++.++...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 55666668999999999999988776543 66777776654
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.16 E-value=0.0082 Score=62.81 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh----cCCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH----LKFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~----l~~~~~~l~~s 277 (398)
|++..+.+|+.||||||||+++..++.+ .|-+.+.++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5777788999999999999999877433 25777777764
No 376
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.15 E-value=0.0094 Score=64.42 Aligned_cols=34 Identities=26% Similarity=0.596 Sum_probs=25.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
.+|++||||||||+++.++...+ |..+..+..+.
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn 211 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSN 211 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcH
Confidence 47899999999999887766654 56666665443
No 377
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.13 E-value=0.006 Score=60.32 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=27.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|.+..+-++++||||||||+|+..++.+. +-+++.++..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 45555668999999999999987655443 4556666544
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.13 E-value=0.0041 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=23.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...+++.||+|+|||+++++++....
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999999998875
No 379
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.13 E-value=0.0064 Score=57.30 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=27.1
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
|++...-+++.||||||||+++..++... +...+.++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45556668999999999999975554433 556666663
No 380
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.12 E-value=0.01 Score=61.24 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=28.8
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCc-EEEee
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFD-IYHLD 275 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~-~~~l~ 275 (398)
.|.-++++|+||||||+++..+|..+++. ++..|
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD 288 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTD 288 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehh
Confidence 36678999999999999999999999986 44444
No 381
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0034 Score=57.84 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
++|.|+||+|||++|+-+|+++.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 689999999999999999999843
No 382
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.10 E-value=0.0062 Score=59.06 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=40.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCC--cEEEeecccccC-----hHHHHHHHHc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKF--DIYHLDLTDIQF-----SSDLQFLLLT 291 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--~~~~l~~s~~~~-----~~~L~~l~~~ 291 (398)
|+-..|.+|+.|+||||||.+|-.+|+.+|- ||..+..+++.+ ...|-+.|..
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRk 121 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRK 121 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHH
Confidence 4445688999999999999999999999985 788888887753 2345555543
No 383
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.10 E-value=0.0035 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
-++|.||+|+|||++++.|++.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 37899999999999999999976543
No 384
>PRK08356 hypothetical protein; Provisional
Probab=96.08 E-value=0.0049 Score=56.32 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=23.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
-++|.||||+|||++|+.++ +.|++.+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~~is 34 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFCRVS 34 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 37789999999999999996 46776444
No 385
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.07 E-value=0.0053 Score=56.22 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=27.0
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.|+|++|+|||++++.+++ +|+++++.+
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 478999999999999999998 898888776
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.07 E-value=0.0061 Score=54.33 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=27.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5789999999999999888775 666777765543
No 387
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.06 E-value=0.0081 Score=57.84 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=35.3
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcC
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+++++...++..+.+.+.+. .++| +++.||+|+|||++.+++..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---------------~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---------------KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 467888888777666543332 1234 78999999999999999987764
No 388
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.04 E-value=0.0048 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
..-+.|.||+|+|||++++.++..++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45588999999999999999999876
No 389
>PRK06761 hypothetical protein; Provisional
Probab=96.02 E-value=0.0054 Score=59.58 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=26.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+++.||||+|||++++.+++.++...+.++
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 4789999999999999999999986555544
No 390
>PRK04328 hypothetical protein; Provisional
Probab=96.02 E-value=0.0075 Score=57.48 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=30.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s~ 278 (398)
|++....+|++||||||||.++..++.+ .|-+.+.++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 5666677999999999999998765543 356777776544
No 391
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.02 E-value=0.0057 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=26.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC---CcEEEeecccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDI 279 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~ 279 (398)
+.+.|+||+|||++|+.++..++ .++..++..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 56899999999999999999973 45555554443
No 392
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.02 E-value=0.0053 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=26.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.+.||+|+|||++++.+|..+++++++-
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 66899999999999999999999887754
No 393
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.01 E-value=0.0051 Score=64.36 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=29.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+.|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 7899999999999999999999999998873
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.013 Score=59.51 Aligned_cols=26 Identities=42% Similarity=0.689 Sum_probs=22.5
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhc
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.++-++|+||+|+|||+++.-+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35668999999999999999998765
No 395
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.01 E-value=0.0057 Score=59.54 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=29.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+++.||+|+|||+++..+|.+++..++.++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 5789999999999999999999999888876444
No 396
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.00 E-value=0.007 Score=55.75 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.+.||||+|||+|+++|+..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477999999999999999999983
No 397
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.022 Score=49.79 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=33.9
Q ss_pred CCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCc
Q 048683 250 GPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMP 293 (398)
Q Consensus 250 GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~ 293 (398)
|..|||||+++.++|..+++.|++- .++....++.++-.+.+
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidG--DdlHp~aNi~KM~~GiP 43 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDG--DDLHPPANIEKMSAGIP 43 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecc--cccCCHHHHHHHhCCCC
Confidence 8999999999999999999888764 45666777777665543
No 398
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=95.98 E-value=0.0061 Score=60.60 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 217 LKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
..+.|.+.++.... ++|.+|.+||-||-.||||++|.|+-+-+|-....++++
T Consensus 137 ~~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p 189 (417)
T PF06431_consen 137 FDDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP 189 (417)
T ss_dssp HHHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-
T ss_pred hHHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCC
Confidence 34555566665554 457789999999999999999999999998777777654
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.98 E-value=0.012 Score=60.32 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
++-++|.||+|+||||++..+|..+ |..+.-+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 4568899999999999999998776 555555554
No 400
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.98 E-value=0.0058 Score=55.43 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=27.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.++|++|||||++++.+++..++++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 568999999999999999999889888775
No 401
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.98 E-value=0.0083 Score=59.41 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=28.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s 277 (398)
|++..+-+++|||||||||+|+-.+|.+ .+...+.++..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 4555555889999999999999876644 35566666653
No 402
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.96 E-value=0.013 Score=57.93 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=35.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---------cCCcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---------LKFDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---------l~~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++..+-++++||||+|||.++..+|-. .+-.++.++...--+..++.++..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 4555566889999999999999877642 234677777655434566665543
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=95.96 E-value=0.012 Score=60.52 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCh-hHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeeccc
Q 048683 217 LKKMIIKDLDIFRNGK-EYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTD 278 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~ 278 (398)
+++.+.+.+...+... ..+. .....+.-+++.||||+|||+++..+|..+ |..+..+++..
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~-~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELN-LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred HHHHHHHHHHHHhCCCcceee-ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 4455555555555421 1111 122345678999999999999888877754 56666665543
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.96 E-value=0.0053 Score=57.29 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=28.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
|++....++++||||||||+++..++.+. +.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56666679999999999999998776432 556666654
No 405
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.96 E-value=0.021 Score=55.91 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=39.3
Q ss_pred cccc-cChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 209 KDLA-LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 209 ~~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
+++. +++++++.+.+.+...+... .+..+-++|+|+.|+|||++...+.+-+|-..
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhh
Confidence 3443 35556666666666555432 34456789999999999999999998887543
No 406
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.94 E-value=0.0047 Score=58.04 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.-+.+.||||+|||++++.+|+++|+++++...
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 347789999999999999999999998876543
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.92 E-value=0.0054 Score=60.71 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.++|+.||+|+|||++++|++.+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 408
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.92 E-value=0.0055 Score=54.27 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=29.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
-+.|.|.||+|||++|+++...+ +.+++.++...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 47899999999999999999887 788999986554
No 409
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.92 E-value=0.0069 Score=59.23 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
|--+++.||+|||||++|..+|..++.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4558999999999999999999999987
No 410
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.92 E-value=0.0039 Score=57.32 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=21.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
|+-++|.||+|+|||+++.-+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999998888766
No 411
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.91 E-value=0.0055 Score=67.14 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.+-||||||||++++.+|+.+|+.+++..
T Consensus 4 i~I~G~~GsGKST~ak~la~~l~~~~~~~g 33 (712)
T PRK09518 4 VAIDGPAGVGKSSVSRALAQYLGYAYLDTG 33 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeecC
Confidence 678999999999999999999998877653
No 412
>PRK04132 replication factor C small subunit; Provisional
Probab=95.88 E-value=0.005 Score=68.00 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=38.1
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHH
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNL 259 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~l 259 (398)
.+|.. .++|.+|+|++|++.+++.+...+.. | .. ..+||+||||+||+..
T Consensus 7 ~~~~~----k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~-~i-~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 7 KPWVE----KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G-SM-PHLLFAGPPGVGKCLT 56 (846)
T ss_pred ccHHH----hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CC-CeEEEECCCCCCcccc
Confidence 36755 88999999999999999887666641 1 11 2378999999999743
No 413
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.87 E-value=0.0084 Score=54.70 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+.||+|+|||+++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987
No 414
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.87 E-value=0.015 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+|+.||||+|||++|..+|...+.+.+.+.....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~ 35 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEA 35 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCc
Confidence 5889999999999999999887778877765543
No 415
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.87 E-value=0.013 Score=58.57 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=35.5
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-..++||||||||.++..+|-.. +-.++.++...--+..++.++..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 45555557899999999999998876432 24667777655434566666543
No 416
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.86 E-value=0.0065 Score=45.26 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
..+|+||.|+|||++..|+.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987654
No 417
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.85 E-value=0.0047 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHhcCCcEEEeec
Q 048683 252 PGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 252 PGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
||+|||++.+.+|..++++|+++|.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH
Confidence 7999999999999999999999974
No 418
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.84 E-value=0.013 Score=57.94 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=25.5
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
..+++|+-||||-|.|||+|.-.....+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 346799999999999999999888877754
No 419
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.83 E-value=0.0047 Score=56.39 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
|-+.||||+|||++|++++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999997
No 420
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.82 E-value=0.045 Score=54.43 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=57.6
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+...+...|+.+++.....+.+......+-. ..-.+|+.|..||||-.+|+|.-... ..||+-++|
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred cccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 4456667899999888777777665543322 12358999999999999999865543 579999999
Q ss_pred ccccChHHHHHHHHcCc
Q 048683 277 TDIQFSSDLQFLLLTMP 293 (398)
Q Consensus 277 s~~~~~~~L~~l~~~~~ 293 (398)
..+-.+..--++|..++
T Consensus 264 A~lPe~~aEsElFG~ap 280 (511)
T COG3283 264 ASLPEDAAESELFGHAP 280 (511)
T ss_pred CCCchhHhHHHHhcCCC
Confidence 88854333334554443
No 421
>PF13479 AAA_24: AAA domain
Probab=95.81 E-value=0.005 Score=57.21 Aligned_cols=19 Identities=53% Similarity=1.093 Sum_probs=17.4
Q ss_pred cceeeCCCCCCchHHHHHH
Q 048683 245 GYLLFGPPGTGKSNLIASM 263 (398)
Q Consensus 245 giLL~GPPGTGKT~la~ai 263 (398)
-+|+|||||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 4899999999999999887
No 422
>PRK10646 ADP-binding protein; Provisional
Probab=95.81 E-value=0.032 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.-++|.|+=|+|||++++++|+.+|.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34889999999999999999999985
No 423
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.79 E-value=0.0067 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=22.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
++.+++.||+|+|||+++++++.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999874
No 424
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.79 E-value=0.012 Score=62.73 Aligned_cols=97 Identities=18% Similarity=0.058 Sum_probs=63.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC--cEEEeecccc----cChHHHHHHHHcCcc-----------------------
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF--DIYHLDLTDI----QFSSDLQFLLLTMPS----------------------- 294 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~--~~~~l~~s~~----~~~~~L~~l~~~~~~----------------------- 294 (398)
.|+|+-|++|||||+++++++..+.- ||..+..+.- ...-+|...+..-..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999999864 7777654432 122333333322111
Q ss_pred -cccchhhhhhhc---------CCcccCCCCeEEEEecCCC---CCCChhccCCCchhhHh
Q 048683 295 -RVTLSGLLNFID---------GSWSWCGEGRIILFWTNHK---EKLDPALLRPGRMDQRA 342 (398)
Q Consensus 295 -~~~ls~LL~~lD---------gl~s~~~~~vivI~TTN~~---~~LDpAllRpGR~D~l~ 342 (398)
..+++.|++.|+ |.....+...++|+|-|.. ..|.++++- |||..+
T Consensus 106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v 164 (584)
T PRK13406 106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHL 164 (584)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEE
Confidence 156667777775 3333334556778875533 569999999 999944
No 425
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.79 E-value=0.0093 Score=61.75 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=31.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++...-+|++||||+|||+++..+|... +.+++.++..+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 45555668999999999999999888765 56777776543
No 426
>PRK13975 thymidylate kinase; Provisional
Probab=95.78 E-value=0.0062 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.189 Sum_probs=23.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
-+.+.||+|+|||++++.+|+.++...
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 367899999999999999999998643
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.78 E-value=0.0075 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=21.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
+.+.||+|+|||++++.++......
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5689999999999999999986543
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.77 E-value=0.006 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+++.||+|+|||+++++++.++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999988875
No 429
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.74 E-value=0.0068 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.+.||+|+||||++++++..++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999876
No 430
>PRK14974 cell division protein FtsY; Provisional
Probab=95.74 E-value=0.015 Score=58.01 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=26.0
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
++-++|.||||+|||+++..+|..+ +..+..+.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4568899999999999998888765 445544443
No 431
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.74 E-value=0.017 Score=52.02 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=30.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc-ChHHHHHHHH
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ-FSSDLQFLLL 290 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~-~~~~L~~l~~ 290 (398)
+.|.||+|+|||++++.+++.+ |..++.+....-. ....+++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 51 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh
Confidence 5688999999999999999998 6666655433211 1234555543
No 432
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.73 E-value=0.011 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+++.||+|+|||+++++++.++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999999999876
No 433
>PLN02840 tRNA dimethylallyltransferase
Probab=95.72 E-value=0.0093 Score=60.92 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=29.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
-+++.||+|+|||+++..+|..++..++..+.-
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 478999999999999999999999888877653
No 434
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0069 Score=56.11 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=26.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+-+=||.|+||||+|+.+|..+|+++++-
T Consensus 7 IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 7 IAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred EEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 45779999999999999999999988764
No 435
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.67 E-value=0.01 Score=56.75 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=30.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~ 278 (398)
|.....-+++.||||+|||+++..+|..+ +.++..+++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44455568999999999999988876653 77787777654
No 436
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.66 E-value=0.016 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHh
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
..++++.||||||||+++.+++.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 357999999999999999998877
No 437
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.66 E-value=0.01 Score=54.99 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=28.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+-|+|++|+|||++++.++.++|+++++.+
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 4679999999999999999999999988765
No 438
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.63 E-value=0.0076 Score=57.15 Aligned_cols=28 Identities=29% Similarity=0.732 Sum_probs=21.3
Q ss_pred eeCCCCCCchHHHHHHHHhcC---CcEEEee
Q 048683 248 LFGPPGTGKSNLIASMANHLK---FDIYHLD 275 (398)
Q Consensus 248 L~GPPGTGKT~la~aiA~~l~---~~~~~l~ 275 (398)
..||||+||||+++++.+.+. .+++.++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence 369999999999999999874 4455444
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.63 E-value=0.0074 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.8
Q ss_pred cccceeeCCCCCCchHHHHHHHHh
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
++-++|.||||+|||++++++++.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 455889999999999999999764
No 440
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.63 E-value=0.0072 Score=51.43 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
..-++|+|+=|+|||++++++|..+|.+
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3458999999999999999999999753
No 441
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.01 Score=58.07 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=33.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
++-+++.||.++|||.++-++|+.+|..++++|.-.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 4568999999999999999999999999999986554
No 442
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.61 E-value=0.023 Score=50.07 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.0
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
.+.+||.+|+|+|||.++..++.++..+++.+-.+
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~ 59 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVLIVAPN 59 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESS
T ss_pred CCCEEEEECCCCCcChhhhhhhhccccceeEecCH
Confidence 46799999999999999998777776677776533
No 443
>PRK10536 hypothetical protein; Provisional
Probab=95.60 E-value=0.014 Score=55.94 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.3
Q ss_pred cceeeCCCCCCchHHHHHHHHh-c---CCcEEEeecccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANH-L---KFDIYHLDLTDI 279 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~-l---~~~~~~l~~s~~ 279 (398)
-+++.||+|||||++|.|+|.+ + .+..+.+.-+.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 4789999999999999999885 2 244444444443
No 444
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.59 E-value=0.014 Score=58.00 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
++++|+.||+|+|||++.+|++.+...
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 467999999999999999999998863
No 445
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.59 E-value=0.0098 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
.+-|.+.|++|||||+|+++||..+|...+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 456999999999999999999999987743
No 446
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.016 Score=58.77 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.++++.+.+.+...+..+..+ ...++-++|.||+|+|||+++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 455666666665555433211 1224668999999999999999999876
No 447
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.57 E-value=0.019 Score=55.81 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc--ceeeCCCCCCchHHHHHHHHhc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG--YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg--iLL~GPPGTGKT~la~aiA~~l 267 (398)
.|.|+.-+++.|...+..++.++. +.+. +=|||+|||||+..++.||+.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 478999999999999999888763 2333 4489999999999999999986
No 448
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.55 E-value=0.01 Score=58.93 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.+.+.|+||||||+|+++++..++.+++.-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E 193 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWE 193 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEee
Confidence 4689999999999999999999999887543
No 449
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.54 E-value=0.009 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
++++++||||+|||.++.+.+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999988877666653
No 450
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.017 Score=52.06 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=30.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
.-+.|.|.+|+|||++|.|++..+ |+..|.++...+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 347799999999999999999987 788999886554
No 451
>PTZ00035 Rad51 protein; Provisional
Probab=95.51 E-value=0.023 Score=56.63 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=34.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-+.++||||+|||+++..+|.... -.++.++....-...++.++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~ 174 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE 174 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 455555578999999999999998875433 3455666544334455655543
No 452
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.51 E-value=0.074 Score=54.93 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=48.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHH
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDL 285 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L 285 (398)
..+++......++.+.+..... ....+++.|.+||||+++|+++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 4567776666666666654321 23468999999999999999998775 4689999998873 3334
Q ss_pred HHHH
Q 048683 286 QFLL 289 (398)
Q Consensus 286 ~~l~ 289 (398)
...+
T Consensus 202 ~~~l 205 (463)
T TIGR01818 202 ESEL 205 (463)
T ss_pred HHHh
Confidence 4333
No 453
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.51 E-value=0.023 Score=56.22 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=34.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|.... -..+.++....-+..++.++.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 455555588999999999999998875322 255667665543444555544
No 454
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.46 E-value=0.0092 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+++.|++|+|||+|++.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67899999999999999997654
No 455
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.45 E-value=0.014 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=27.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
+.-+.|.|+||+|||+++++++..+ +...+.++..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 3457899999999999999999987 4455666543
No 456
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.026 Score=58.03 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 217 LKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
+.+.+.+.+...+.....--......|.-+++.||||+|||+++..+|..+ |..+..+++.
T Consensus 73 ~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 73 FIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 444454555544443211011112235678999999999999988877763 4566666554
No 457
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.42 E-value=0.02 Score=55.72 Aligned_cols=48 Identities=29% Similarity=0.496 Sum_probs=35.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
....+|+.+..++-+.+ +. ..++| +|..||.|+|||++..||-++.|.
T Consensus 103 ~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 103 SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 34457888888765544 21 12567 577899999999999999999874
No 458
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.41 E-value=0.0098 Score=52.30 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHh
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.+|+||.||+|+|||+++.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999888776
No 459
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.033 Score=56.93 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=21.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.-+++.||+|+|||+++..+|...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3448899999999999999998754
No 460
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.40 E-value=0.031 Score=53.96 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=45.8
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccCh----HHH
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFS----SDL 285 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~----~~L 285 (398)
+++.-++..+.|..... .++.+ ....||.|++|+||+++++..|...++.++.+..+.-.+. .+|
T Consensus 9 ~lVlf~~ai~hi~ri~R-vL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISR-VLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHHH-HHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHH-HHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 45666666666654432 33322 2448999999999999999999999999999987664432 445
Q ss_pred HHHHHc
Q 048683 286 QFLLLT 291 (398)
Q Consensus 286 ~~l~~~ 291 (398)
+.++..
T Consensus 78 k~~~~~ 83 (268)
T PF12780_consen 78 KKALQK 83 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 461
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.37 E-value=0.011 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=23.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
+.+.|++|+|||++++.+++++++.++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 468899999999999999999887654
No 462
>PRK09354 recA recombinase A; Provisional
Probab=95.36 E-value=0.02 Score=57.29 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=27.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s~ 278 (398)
|++..+-+++|||||||||+|+-.++.. .|-..+.++...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 4555555889999999999998765543 355666665443
No 463
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.35 E-value=0.014 Score=52.59 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=26.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.-+.+.|+||+|||+++++++..+ +...+.++.
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 457899999999999999999987 334555543
No 464
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.35 E-value=0.022 Score=59.01 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=40.4
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
..+|+++++.+...+.+...+. .|.| +|+.||.|+|||++.-++-++++.+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 3468999999988887766654 2456 5778999999999999998888754
No 465
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.34 E-value=0.0098 Score=54.59 Aligned_cols=26 Identities=42% Similarity=0.833 Sum_probs=23.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+.++++||+|+|||++++.+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 45799999999999999999999884
No 466
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.34 E-value=0.022 Score=59.64 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=37.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcC
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.+++++.+.+++.+.+...+. .++| +|+.||+|+|||++..++.++++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4578888888877766654432 2356 68999999999999998877764
No 467
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.32 E-value=0.029 Score=56.09 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=35.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-++++||||+|||.++..+|-... -.++.++...--+..++.++..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 344445578999999999999987774322 2577777665445566666654
No 468
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.31 E-value=0.023 Score=57.34 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=21.0
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+|+.||+|+|||+++++++.+.
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998877
No 469
>PRK07667 uridine kinase; Provisional
Probab=95.28 E-value=0.016 Score=52.91 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTD 278 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~ 278 (398)
-|.+.|+||+|||++++.++..++ .++..++..+
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 467899999999999999999874 4545555444
No 470
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.26 E-value=0.013 Score=61.38 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=25.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.+.||+|||||++++.+|+.+|+.+++
T Consensus 287 i~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 6789999999999999999999976665
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.22 E-value=0.011 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred cccceeeCCCCCCchHHHHHHH
Q 048683 243 KRGYLLFGPPGTGKSNLIASMA 264 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA 264 (398)
...+.|.||+|+|||+|++++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999987
No 472
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.21 E-value=0.016 Score=53.57 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+-++|++|+|||++++.++. +|+++++.+
T Consensus 8 igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 56899999999999999996 898888766
No 473
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.20 E-value=0.016 Score=52.24 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=28.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
-|+|.|||-+||||+|++|.+.+.-+++.+....
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~ 36 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDT 36 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecCh
Confidence 4789999999999999999999999999887543
No 474
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.17 E-value=0.019 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHh
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.+-+.++|++|+|||+||..+++.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCH
T ss_pred eEEEEEEcCCcCCcceeeeecccc
Confidence 455889999999999999999987
No 475
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.012 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=21.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.+.||||+|||+++.-+|+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3478999999999999999998773
No 476
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.15 E-value=0.019 Score=66.28 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
..+..+++++|.++..+++...+. .+....+-+-++||+|+|||++|+++++.+..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 344568889998887777765542 11223456789999999999999999887643
No 477
>PLN02748 tRNA dimethylallyltransferase
Probab=95.15 E-value=0.016 Score=60.07 Aligned_cols=35 Identities=31% Similarity=0.623 Sum_probs=30.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
-+++.||+|+|||+|+..+|..++..++..+.-.+
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQV 58 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQV 58 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhee
Confidence 47899999999999999999999988888876544
No 478
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.14 E-value=0.021 Score=53.48 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC-----CcEEEeecccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK-----FDIYHLDLTDI 279 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~-----~~~~~l~~s~~ 279 (398)
+-+.||+|+||||+++.|+..+. ..+..++..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 34789999999999999999874 23444544444
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.14 E-value=0.021 Score=59.78 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=28.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|++....+|+.||||||||+++..++... |-+.+.++..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 45555669999999999999988777654 5566666543
No 480
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=95.14 E-value=0.082 Score=56.05 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=42.4
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcc--cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVW--KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~--~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
|-.|.|.+.+|.-|.-.+ +.+-..+..-|.+. --.+++.|.||||||-+.++.++.+...+|.-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts 409 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS 409 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec
Confidence 567788888887664322 23222222222222 12389999999999999999999998777653
No 481
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.027 Score=57.99 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=25.8
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLT 277 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s 277 (398)
++.++|.||+|+|||+++..+|..+ +..+..++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3468899999999999988887654 3455555543
No 482
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.10 E-value=0.014 Score=59.01 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.|++||||||||+|++.|++....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 788999999999999999997743
No 483
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.08 E-value=0.015 Score=61.26 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-++++|+||+|||++|+.++...++..++.+
T Consensus 369 p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D 401 (526)
T TIGR01663 369 CEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNAD 401 (526)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHcCCeEECcH
Confidence 344889999999999999999998887655443
No 484
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.07 E-value=0.023 Score=57.48 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=29.1
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|+....-+|++||||+|||+++..+|... +.+++.++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555668999999999999999888654 3466666543
No 485
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.04 E-value=0.025 Score=44.12 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=24.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
++++|.+|+|||+++..+|..+ |.++..++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4688999999999999999987 66666555
No 486
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.04 E-value=0.012 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.3
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+++.|+||+||||++.++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
No 487
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.04 E-value=0.043 Score=53.23 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred ccccceeeCCCCCCchHHHHHHHH------hcCCcEEEeecccccChHHHHHHHHc
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMAN------HLKFDIYHLDLTDIQFSSDLQFLLLT 291 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~------~l~~~~~~l~~s~~~~~~~L~~l~~~ 291 (398)
....+||.||.|.|||.||+-|-. .+.-+|++++|..+..+..+..+|..
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh 262 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH 262 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh
Confidence 345699999999999999988754 35678999999999877766666654
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.03 E-value=0.014 Score=58.41 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.6
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.+..+|+.||+|+|||++++|++.+...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 3567999999999999999999998753
No 489
>PTZ00301 uridine kinase; Provisional
Probab=95.03 E-value=0.014 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+.||||+|||++|+.+++.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 5688999999999999998776
No 490
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.02 E-value=0.0093 Score=50.71 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.7
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
...-+.+.||+|+|||+|+++++.....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 3445889999999999999999998753
No 491
>PRK10436 hypothetical protein; Provisional
Probab=95.02 E-value=0.031 Score=58.08 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=36.0
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcC
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+++++.+.+...+.+.+.+. .++| +|+.||+|+|||++..++-++++
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 478999988877766655442 1345 78899999999999888777764
No 492
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.02 E-value=0.025 Score=50.98 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=24.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
+|-++|.||+|+|||++++.+++...-.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 46789999999999999999999876433
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.00 E-value=0.023 Score=59.71 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=28.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
|.+..+-+|++|+||||||+++..++.+. |-+++.++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 56666779999999999999998665432 4555555443
No 494
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.22 Score=51.23 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecccccCh
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLTDIQFS 282 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s~~~~~ 282 (398)
=+++.|-+.....+.+.+...+.. .....+-+.|-||||||.+..-+-..+ ....+.+++..+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 355677666666665555444432 234567899999999998776443333 224577888876543
Q ss_pred HHHH-HHHHcC----------------------cccccchhhhhhhcCCcccC--------------CCCeEEEEecCCC
Q 048683 283 SDLQ-FLLLTM----------------------PSRVTLSGLLNFIDGSWSWC--------------GEGRIILFWTNHK 325 (398)
Q Consensus 283 ~~L~-~l~~~~----------------------~~~~~ls~LL~~lDgl~s~~--------------~~~vivI~TTN~~ 325 (398)
..+- .++... .++.++--.|++||.+.... ...+++|+..|..
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh
Confidence 3321 111111 01123334667777654321 2446888999999
Q ss_pred CCCChhccC
Q 048683 326 EKLDPALLR 334 (398)
Q Consensus 326 ~~LDpAllR 334 (398)
|.=|-.|.|
T Consensus 300 DlTdR~Lpr 308 (529)
T KOG2227|consen 300 DLTDRFLPR 308 (529)
T ss_pred hHHHHHhhh
Confidence 888877765
No 495
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.93 E-value=0.034 Score=51.61 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=28.4
Q ss_pred cChhHHhhhcCccccc--ceeeCCCCCCchHHHHHHHHhc
Q 048683 230 NGKEYYRRVGRVWKRG--YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 230 ~~~~~~~~~g~~~~rg--iLL~GPPGTGKT~la~aiA~~l 267 (398)
.+.+.-+++|-..|-| +|+-|+.|||||-|++.+|.-+
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 4556667776544444 7889999999999999887743
No 496
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.92 E-value=0.019 Score=51.96 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC---cEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF---DIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~---~~~~l 274 (398)
|.+.|+||+|||++++.++++++. .+..+
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 678999999999999999999843 45444
No 497
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.92 E-value=0.016 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+++.||+|||||++.+++|+-..
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 389999999999999999998653
No 498
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.91 E-value=0.033 Score=59.42 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=36.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcC
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+++++++.++..+.+.+.+. .++| +|+.||+|+|||++..++.++++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~---------------~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH---------------KPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 468888888877776655443 1345 68999999999999988887775
No 499
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=94.88 E-value=0.023 Score=52.30 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+-++|++|+|||++++.++. .|+++++.+
T Consensus 4 igitG~igsGKst~~~~l~~-~g~~vid~D 32 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSS-EGFLIVDAD 32 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeEEeCc
Confidence 67899999999999999997 788887765
No 500
>PRK05439 pantothenate kinase; Provisional
Probab=94.85 E-value=0.037 Score=54.51 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=26.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC-----CcEEEeecccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK-----FDIYHLDLTDI 279 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~-----~~~~~l~~s~~ 279 (398)
--|.+.||||+|||++|+.++..++ ..+..+...+.
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3467899999999999999998764 23444544444
Done!