Query 048683
Match_columns 398
No_of_seqs 381 out of 2459
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 21:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3E-34 1E-38 287.2 15.7 168 202-373 141-362 (405)
2 4b4t_I 26S protease regulatory 100.0 6.2E-34 2.1E-38 285.9 15.6 170 200-373 173-396 (437)
3 4b4t_L 26S protease subunit RP 100.0 2.4E-33 8.4E-38 284.2 15.4 168 202-373 174-395 (437)
4 4b4t_M 26S protease regulatory 100.0 2.8E-33 9.7E-38 283.5 14.6 154 200-357 172-360 (434)
5 4b4t_H 26S protease regulatory 100.0 4.1E-33 1.4E-37 282.4 14.8 188 200-391 200-455 (467)
6 4b4t_K 26S protease regulatory 100.0 6.8E-33 2.3E-37 280.5 14.4 152 202-357 165-352 (428)
7 3cf2_A TER ATPase, transitiona 99.9 2E-28 6.9E-33 264.1 5.1 151 203-357 471-656 (806)
8 3cf2_A TER ATPase, transitiona 99.9 1E-26 3.5E-31 250.8 13.9 150 204-357 199-380 (806)
9 2x8a_A Nuclear valosin-contain 99.9 2.6E-24 9E-29 206.1 12.6 150 204-357 5-186 (274)
10 3cf0_A Transitional endoplasmi 99.9 1.7E-23 5.8E-28 202.7 11.8 152 202-357 8-194 (301)
11 1lv7_A FTSH; alpha/beta domain 99.9 1.1E-21 3.8E-26 184.8 15.7 151 202-357 5-190 (257)
12 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.3E-21 4.6E-26 191.4 15.2 165 203-373 6-208 (322)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.3E-21 4.5E-26 183.9 14.0 148 205-357 2-185 (262)
14 2ce7_A Cell division protein F 99.9 9.2E-22 3.1E-26 201.8 13.1 150 203-357 10-194 (476)
15 3h4m_A Proteasome-activating n 99.8 4.2E-21 1.5E-25 183.1 13.7 154 200-357 8-196 (285)
16 3eie_A Vacuolar protein sortin 99.8 3.1E-21 1.1E-25 188.4 11.7 151 201-357 10-192 (322)
17 2qp9_X Vacuolar protein sortin 99.8 8.2E-21 2.8E-25 188.2 11.2 166 202-373 44-246 (355)
18 2dhr_A FTSH; AAA+ protein, hex 99.8 2E-20 6.7E-25 193.0 13.9 149 204-357 26-209 (499)
19 3hu3_A Transitional endoplasmi 99.8 1.6E-20 5.4E-25 193.6 11.7 150 204-357 199-380 (489)
20 2r62_A Cell division protease 99.8 5.8E-21 2E-25 180.7 7.8 151 203-357 5-191 (268)
21 2zan_A Vacuolar protein sortin 99.8 3.3E-20 1.1E-24 189.2 12.6 150 202-357 127-309 (444)
22 1ixz_A ATP-dependent metallopr 99.8 1.9E-19 6.7E-24 169.2 13.9 151 202-357 9-194 (254)
23 3vfd_A Spastin; ATPase, microt 99.8 1E-19 3.5E-24 182.2 12.3 183 200-387 106-326 (389)
24 1ypw_A Transitional endoplasmi 99.8 4.6E-21 1.6E-25 208.6 1.2 151 203-357 471-656 (806)
25 3d8b_A Fidgetin-like protein 1 99.8 2.2E-19 7.5E-24 178.0 13.1 167 202-373 77-280 (357)
26 3t15_A Ribulose bisphosphate c 99.8 5.4E-20 1.8E-24 177.6 7.5 134 237-374 30-213 (293)
27 3b9p_A CG5977-PA, isoform A; A 99.8 2.8E-19 9.6E-24 171.6 12.2 181 202-387 14-233 (297)
28 1iy2_A ATP-dependent metallopr 99.8 1.3E-18 4.5E-23 166.0 14.1 150 203-357 34-218 (278)
29 1g41_A Heat shock protein HSLU 99.8 4.1E-19 1.4E-23 180.2 7.7 138 209-352 15-181 (444)
30 1ypw_A Transitional endoplasmi 99.7 5.2E-18 1.8E-22 184.7 10.1 151 203-357 198-380 (806)
31 2c9o_A RUVB-like 1; hexameric 99.7 1.4E-17 4.7E-22 170.3 7.1 139 205-351 33-226 (456)
32 3pfi_A Holliday junction ATP-d 99.6 1.7E-14 5.8E-19 140.7 17.7 180 193-388 17-229 (338)
33 1hqc_A RUVB; extended AAA-ATPa 99.5 2.2E-13 7.6E-18 131.6 16.0 168 202-381 5-206 (324)
34 3u61_B DNA polymerase accessor 99.5 4.4E-14 1.5E-18 137.0 10.1 173 192-390 13-220 (324)
35 3syl_A Protein CBBX; photosynt 99.4 2.9E-13 9.8E-18 130.1 9.8 154 210-372 32-232 (309)
36 2chg_A Replication factor C sm 99.4 1.4E-12 4.8E-17 117.4 13.7 167 202-390 10-208 (226)
37 1ofh_A ATP-dependent HSL prote 99.4 6.7E-13 2.3E-17 127.0 12.2 145 209-357 15-210 (310)
38 1d2n_A N-ethylmaleimide-sensit 99.4 5.6E-13 1.9E-17 126.3 10.4 155 209-373 33-223 (272)
39 1sxj_A Activator 1 95 kDa subu 99.4 1.3E-12 4.6E-17 135.3 13.7 188 192-389 26-255 (516)
40 2chq_A Replication factor C sm 99.4 6.4E-13 2.2E-17 127.5 8.7 170 194-389 6-207 (319)
41 3uk6_A RUVB-like 2; hexameric 99.4 7.8E-12 2.7E-16 122.9 14.6 68 203-278 37-107 (368)
42 3pvs_A Replication-associated 99.3 3.3E-12 1.1E-16 130.2 11.9 172 202-392 19-221 (447)
43 3m6a_A ATP-dependent protease 99.3 3.7E-12 1.2E-16 132.9 11.5 138 208-357 80-261 (543)
44 1sxj_D Activator 1 41 kDa subu 99.3 1.8E-12 6.1E-17 126.4 8.2 173 193-390 25-239 (353)
45 1njg_A DNA polymerase III subu 99.3 2.1E-11 7.1E-16 110.8 14.5 168 202-390 16-232 (250)
46 3hws_A ATP-dependent CLP prote 99.3 7.2E-13 2.5E-17 131.0 5.1 71 210-280 16-88 (363)
47 1sxj_B Activator 1 37 kDa subu 99.3 6.8E-12 2.3E-16 120.5 11.4 172 193-390 9-213 (323)
48 1sxj_C Activator 1 40 kDa subu 99.3 7.3E-12 2.5E-16 122.5 10.6 169 193-386 13-212 (340)
49 1iqp_A RFCS; clamp loader, ext 99.3 3.1E-12 1.1E-16 123.1 7.9 170 193-388 13-214 (327)
50 1jr3_A DNA polymerase III subu 99.3 2.3E-11 8E-16 119.3 13.6 167 202-389 9-224 (373)
51 3pxg_A Negative regulator of g 99.3 2.1E-11 7.2E-16 124.9 13.4 148 202-373 173-358 (468)
52 3pxi_A Negative regulator of g 99.2 4.6E-11 1.6E-15 129.2 13.7 151 202-373 173-358 (758)
53 4fcw_A Chaperone protein CLPB; 99.2 1.3E-11 4.5E-16 118.4 8.2 141 209-357 17-224 (311)
54 1jbk_A CLPB protein; beta barr 99.2 6.7E-12 2.3E-16 110.3 4.9 137 202-356 15-192 (195)
55 1in4_A RUVB, holliday junction 99.2 3.4E-10 1.2E-14 110.7 17.3 175 202-388 18-225 (334)
56 1sxj_E Activator 1 40 kDa subu 99.2 4.2E-11 1.4E-15 117.0 9.9 172 194-390 3-241 (354)
57 1g8p_A Magnesium-chelatase 38 99.2 2.1E-10 7.1E-15 111.6 14.0 54 202-268 17-70 (350)
58 1um8_A ATP-dependent CLP prote 99.2 7.9E-11 2.7E-15 116.7 10.9 128 210-340 22-224 (376)
59 2p65_A Hypothetical protein PF 99.2 5.1E-12 1.8E-16 111.0 1.8 130 202-349 15-186 (187)
60 2r44_A Uncharacterized protein 99.2 2.6E-11 8.8E-16 117.9 6.7 136 203-357 21-193 (331)
61 1l8q_A Chromosomal replication 99.1 2.5E-10 8.6E-15 110.6 12.6 164 202-381 4-203 (324)
62 1a5t_A Delta prime, HOLB; zinc 99.1 4.5E-10 1.5E-14 109.8 14.0 136 242-386 23-205 (334)
63 3bos_A Putative DNA replicatio 99.1 1.8E-10 6.1E-15 105.4 10.0 172 202-391 21-222 (242)
64 2v1u_A Cell division control p 99.1 3.5E-10 1.2E-14 110.9 12.4 173 206-391 16-254 (387)
65 1r6b_X CLPA protein; AAA+, N-t 99.1 1.5E-10 5.3E-15 124.9 10.5 137 209-357 458-661 (758)
66 3pxi_A Negative regulator of g 99.1 1.7E-10 5.9E-15 124.7 10.8 141 209-357 491-670 (758)
67 2qby_B CDC6 homolog 3, cell di 99.1 7E-10 2.4E-14 109.2 13.2 168 209-390 20-249 (384)
68 3te6_A Regulatory protein SIR3 99.1 4.3E-10 1.5E-14 109.5 11.3 169 214-395 25-288 (318)
69 2z4s_A Chromosomal replication 99.0 1.3E-09 4.6E-14 110.6 13.4 169 202-390 98-310 (440)
70 1r6b_X CLPA protein; AAA+, N-t 99.0 1.3E-09 4.5E-14 117.6 14.1 171 202-390 179-406 (758)
71 1qvr_A CLPB protein; coiled co 99.0 5.3E-10 1.8E-14 122.4 10.4 138 202-357 163-340 (854)
72 1fnn_A CDC6P, cell division co 99.0 4.4E-09 1.5E-13 103.3 16.0 175 207-392 15-253 (389)
73 3n70_A Transport activator; si 99.0 4.1E-10 1.4E-14 96.7 7.4 112 210-340 2-128 (145)
74 3co5_A Putative two-component 99.0 1.3E-10 4.5E-15 99.7 3.0 100 210-325 5-116 (143)
75 2gno_A DNA polymerase III, gam 99.0 1.3E-09 4.6E-14 105.4 10.3 129 244-386 19-173 (305)
76 2bjv_A PSP operon transcriptio 99.0 9E-10 3.1E-14 103.6 7.7 64 206-280 3-69 (265)
77 2qby_A CDC6 homolog 1, cell di 98.9 1.4E-08 4.7E-13 99.3 13.3 171 204-390 15-249 (386)
78 1qvr_A CLPB protein; coiled co 98.9 2.9E-09 9.8E-14 116.6 9.2 69 208-280 557-628 (854)
79 3ec2_A DNA replication protein 98.9 4.6E-09 1.6E-13 92.8 7.9 72 202-279 3-78 (180)
80 1svm_A Large T antigen; AAA+ f 98.8 3.2E-09 1.1E-13 105.7 5.4 95 238-340 164-278 (377)
81 3f9v_A Minichromosome maintena 98.8 7.3E-10 2.5E-14 116.7 -0.6 109 245-357 329-485 (595)
82 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 5E-08 1.7E-12 100.5 12.7 127 210-357 23-191 (500)
83 4akg_A Glutathione S-transfera 98.7 2.5E-08 8.4E-13 119.3 10.0 110 243-357 1267-1426(2695)
84 1ojl_A Transcriptional regulat 98.7 3E-08 1E-12 95.7 8.3 61 209-280 2-65 (304)
85 3cmw_A Protein RECA, recombina 98.5 4.9E-08 1.7E-12 112.4 4.9 64 206-269 1017-1108(1706)
86 2w58_A DNAI, primosome compone 98.4 2.6E-07 9E-12 82.8 6.0 70 204-279 20-93 (202)
87 3k1j_A LON protease, ATP-depen 98.3 6.3E-07 2.1E-11 94.4 5.5 53 202-269 34-86 (604)
88 2qgz_A Helicase loader, putati 98.2 1.1E-06 3.8E-11 84.9 6.0 69 204-278 119-191 (308)
89 1w5s_A Origin recognition comp 98.2 7.9E-06 2.7E-10 80.7 12.2 65 207-278 20-96 (412)
90 1tue_A Replication protein E1; 98.2 9.2E-07 3.2E-11 80.5 3.9 35 239-273 54-88 (212)
91 4akg_A Glutathione S-transfera 98.2 3.9E-06 1.3E-10 100.7 9.9 124 243-371 645-803 (2695)
92 2vhj_A Ntpase P4, P4; non- hyd 98.0 9.7E-07 3.3E-11 85.7 1.6 36 239-274 119-156 (331)
93 1u0j_A DNA replication protein 98.0 3.2E-06 1.1E-10 79.9 5.1 29 241-269 102-130 (267)
94 2kjq_A DNAA-related protein; s 97.9 7.1E-06 2.4E-10 70.7 4.4 38 243-280 36-76 (149)
95 3trf_A Shikimate kinase, SK; a 97.7 1.4E-05 4.9E-10 70.2 3.1 33 243-275 5-37 (185)
96 3vkg_A Dynein heavy chain, cyt 97.7 0.00011 3.7E-09 89.2 11.3 110 243-357 1304-1464(3245)
97 3vaa_A Shikimate kinase, SK; s 97.7 1.9E-05 6.5E-10 70.7 3.3 34 242-275 24-57 (199)
98 3vkg_A Dynein heavy chain, cyt 97.6 0.0001 3.4E-09 89.5 9.8 123 244-371 605-763 (3245)
99 1qhx_A CPT, protein (chloramph 97.6 3.1E-05 1E-09 67.5 4.1 33 244-276 4-36 (178)
100 2rhm_A Putative kinase; P-loop 97.6 2.2E-05 7.6E-10 69.1 2.8 35 241-275 3-37 (193)
101 1via_A Shikimate kinase; struc 97.5 3.7E-05 1.3E-09 67.1 3.0 31 245-275 6-36 (175)
102 3kb2_A SPBC2 prophage-derived 97.5 4.5E-05 1.5E-09 65.7 3.4 32 245-276 3-34 (173)
103 3iij_A Coilin-interacting nucl 97.5 4.2E-05 1.4E-09 67.0 3.1 33 243-275 11-43 (180)
104 1y63_A LMAJ004144AAA protein; 97.5 4.6E-05 1.6E-09 67.3 3.2 33 243-275 10-43 (184)
105 2iyv_A Shikimate kinase, SK; t 97.5 4.7E-05 1.6E-09 66.8 3.1 31 245-275 4-34 (184)
106 1zuh_A Shikimate kinase; alpha 97.5 5E-05 1.7E-09 65.7 2.9 32 244-275 8-39 (168)
107 1kag_A SKI, shikimate kinase I 97.4 6.5E-05 2.2E-09 65.1 3.4 32 244-275 5-36 (173)
108 2r2a_A Uncharacterized protein 97.4 0.00012 4.2E-09 66.1 5.2 26 313-340 121-146 (199)
109 2ze6_A Isopentenyl transferase 97.4 7.7E-05 2.6E-09 69.7 3.5 32 245-276 3-34 (253)
110 1e6c_A Shikimate kinase; phosp 97.4 6.8E-05 2.3E-09 64.8 2.9 31 245-275 4-34 (173)
111 3lw7_A Adenylate kinase relate 97.4 7.5E-05 2.6E-09 64.0 3.0 30 245-275 3-32 (179)
112 1gvn_B Zeta; postsegregational 97.4 0.00023 7.8E-09 67.8 6.5 57 215-276 10-66 (287)
113 1tev_A UMP-CMP kinase; ploop, 97.4 7.9E-05 2.7E-09 65.4 3.0 32 244-275 4-35 (196)
114 2cdn_A Adenylate kinase; phosp 97.4 8.9E-05 3.1E-09 66.1 3.3 32 244-275 21-52 (201)
115 1ny5_A Transcriptional regulat 97.3 0.00069 2.4E-08 67.2 9.7 62 208-280 136-200 (387)
116 1qf9_A UMP/CMP kinase, protein 97.3 9E-05 3.1E-09 64.9 2.8 33 243-275 6-38 (194)
117 3f8t_A Predicted ATPase involv 97.3 0.00055 1.9E-08 69.6 8.7 53 211-272 215-268 (506)
118 3cm0_A Adenylate kinase; ATP-b 97.3 8.3E-05 2.8E-09 65.2 2.4 31 245-275 6-36 (186)
119 2pt5_A Shikimate kinase, SK; a 97.3 0.0001 3.5E-09 63.4 2.9 30 246-275 3-32 (168)
120 1ly1_A Polynucleotide kinase; 97.3 6.9E-05 2.4E-09 65.0 1.8 31 244-274 3-34 (181)
121 3be4_A Adenylate kinase; malar 97.3 9.5E-05 3.2E-09 67.1 2.8 32 244-275 6-37 (217)
122 2c95_A Adenylate kinase 1; tra 97.3 0.0001 3.5E-09 64.9 2.8 32 244-275 10-41 (196)
123 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.8E-09 66.2 3.0 30 246-275 3-32 (216)
124 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.5E-09 65.1 3.5 33 243-275 18-50 (202)
125 1kht_A Adenylate kinase; phosp 97.3 9.1E-05 3.1E-09 64.9 2.3 31 244-274 4-39 (192)
126 1zd8_A GTP:AMP phosphotransfer 97.3 0.00011 3.7E-09 67.1 2.7 33 243-275 7-39 (227)
127 1aky_A Adenylate kinase; ATP:A 97.2 0.00013 4.6E-09 66.0 3.2 31 244-274 5-35 (220)
128 3fb4_A Adenylate kinase; psych 97.2 0.00013 4.3E-09 65.8 2.9 30 246-275 3-32 (216)
129 2bwj_A Adenylate kinase 5; pho 97.2 0.00012 4E-09 64.8 2.6 33 243-275 12-44 (199)
130 2p5t_B PEZT; postsegregational 97.2 0.00026 8.8E-09 65.9 5.1 37 243-279 32-68 (253)
131 2vli_A Antibiotic resistance p 97.2 0.00016 5.5E-09 63.0 3.3 29 244-272 6-34 (183)
132 1zp6_A Hypothetical protein AT 97.2 0.00014 4.7E-09 64.0 2.9 35 242-276 8-42 (191)
133 3upu_A ATP-dependent DNA helic 97.2 0.00033 1.1E-08 71.0 5.8 69 192-277 11-83 (459)
134 1ak2_A Adenylate kinase isoenz 97.2 0.00018 6.1E-09 66.0 3.3 32 244-275 17-48 (233)
135 1ukz_A Uridylate kinase; trans 97.2 0.00018 6.2E-09 64.0 3.2 32 244-275 16-47 (203)
136 1knq_A Gluconate kinase; ALFA/ 97.1 0.0002 6.9E-09 62.2 3.3 32 244-275 9-40 (175)
137 1zak_A Adenylate kinase; ATP:A 97.1 0.00013 4.4E-09 66.2 1.7 32 243-274 5-36 (222)
138 3tlx_A Adenylate kinase 2; str 97.1 0.00025 8.5E-09 65.7 3.3 33 243-275 29-61 (243)
139 3umf_A Adenylate kinase; rossm 97.1 0.00027 9.4E-09 64.7 3.3 32 242-273 28-59 (217)
140 2pbr_A DTMP kinase, thymidylat 97.0 0.00034 1.2E-08 61.3 3.8 31 246-276 3-36 (195)
141 1e4v_A Adenylate kinase; trans 97.0 0.00021 7.2E-09 64.5 2.4 29 246-274 3-31 (214)
142 2fna_A Conserved hypothetical 97.0 0.00078 2.7E-08 64.5 6.5 56 207-279 11-66 (357)
143 4eun_A Thermoresistant glucoki 97.0 0.00036 1.2E-08 62.3 3.8 32 243-274 29-60 (200)
144 2cvh_A DNA repair and recombin 97.0 0.00084 2.9E-08 60.0 6.2 51 239-289 16-66 (220)
145 2qen_A Walker-type ATPase; unk 97.0 0.0013 4.4E-08 62.8 7.8 57 205-278 8-64 (350)
146 3crm_A TRNA delta(2)-isopenten 97.0 0.00033 1.1E-08 67.9 3.6 34 244-277 6-39 (323)
147 2pez_A Bifunctional 3'-phospho 97.0 0.00041 1.4E-08 60.5 3.9 33 244-276 6-41 (179)
148 2xb4_A Adenylate kinase; ATP-b 97.0 0.0003 1E-08 64.1 3.0 29 246-274 3-31 (223)
149 3tau_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 62.7 3.5 26 243-268 8-33 (208)
150 3sr0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 63.2 3.4 29 246-274 3-31 (206)
151 2if2_A Dephospho-COA kinase; a 96.9 0.00033 1.1E-08 62.4 2.5 31 245-276 3-33 (204)
152 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00012 4E-09 72.0 -0.6 50 215-273 5-54 (359)
153 1cke_A CK, MSSA, protein (cyti 96.9 0.00047 1.6E-08 62.3 3.4 30 245-274 7-36 (227)
154 2bbw_A Adenylate kinase 4, AK4 96.9 0.00048 1.6E-08 63.5 3.4 31 243-273 27-57 (246)
155 3dzd_A Transcriptional regulat 96.9 0.0033 1.1E-07 61.9 9.7 61 210-281 130-192 (368)
156 2jaq_A Deoxyguanosine kinase; 96.9 0.00049 1.7E-08 60.8 3.3 28 246-273 3-30 (205)
157 2v54_A DTMP kinase, thymidylat 96.9 0.0006 2E-08 60.4 3.8 33 244-276 5-38 (204)
158 1jjv_A Dephospho-COA kinase; P 96.9 0.00043 1.5E-08 61.8 2.8 30 245-275 4-33 (206)
159 3nwj_A ATSK2; P loop, shikimat 96.9 0.00045 1.5E-08 64.6 3.0 33 243-275 48-80 (250)
160 1nks_A Adenylate kinase; therm 96.9 0.00031 1.1E-08 61.4 1.8 24 245-268 3-26 (194)
161 2z0h_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 59.9 3.7 31 246-276 3-36 (197)
162 3ake_A Cytidylate kinase; CMP 96.8 0.00047 1.6E-08 61.2 2.9 31 245-275 4-34 (208)
163 2plr_A DTMP kinase, probable t 96.8 0.00091 3.1E-08 59.4 4.7 30 245-274 6-37 (213)
164 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00056 1.9E-08 63.9 3.2 33 244-276 5-40 (260)
165 1n0w_A DNA repair protein RAD5 96.8 0.0014 4.8E-08 59.5 5.8 50 239-288 20-78 (243)
166 2grj_A Dephospho-COA kinase; T 96.8 0.00056 1.9E-08 61.3 2.9 31 245-275 14-44 (192)
167 3r20_A Cytidylate kinase; stru 96.7 0.00086 2.9E-08 62.1 3.6 32 244-275 10-41 (233)
168 2z43_A DNA repair and recombin 96.7 0.0014 4.8E-08 63.2 5.3 51 239-289 103-162 (324)
169 1uf9_A TT1252 protein; P-loop, 96.7 0.00067 2.3E-08 60.0 2.7 31 244-275 9-39 (203)
170 3a8t_A Adenylate isopentenyltr 96.6 0.00096 3.3E-08 65.0 3.4 35 244-278 41-75 (339)
171 2h92_A Cytidylate kinase; ross 96.6 0.001 3.5E-08 59.8 3.3 32 244-275 4-35 (219)
172 3uie_A Adenylyl-sulfate kinase 96.6 0.0014 4.8E-08 58.4 3.9 33 243-275 25-60 (200)
173 1v5w_A DMC1, meiotic recombina 96.6 0.0026 9E-08 61.9 6.2 51 239-289 118-177 (343)
174 2wwf_A Thymidilate kinase, put 96.6 0.00045 1.5E-08 61.6 0.6 28 244-271 11-38 (212)
175 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.6E-08 59.8 3.1 31 244-275 5-35 (218)
176 1ltq_A Polynucleotide kinase; 96.5 0.00078 2.7E-08 63.8 2.0 32 244-275 3-35 (301)
177 4a74_A DNA repair and recombin 96.5 0.0023 7.9E-08 57.5 5.1 52 239-290 21-81 (231)
178 3foz_A TRNA delta(2)-isopenten 96.5 0.0015 5E-08 63.0 3.8 37 243-279 10-46 (316)
179 2qmh_A HPR kinase/phosphorylas 96.5 0.0013 4.6E-08 59.4 3.1 36 243-279 34-69 (205)
180 1uj2_A Uridine-cytidine kinase 96.5 0.0013 4.5E-08 60.9 3.2 27 244-270 23-49 (252)
181 1q3t_A Cytidylate kinase; nucl 96.5 0.0014 4.8E-08 60.0 3.3 31 245-275 18-48 (236)
182 4b3f_X DNA-binding protein smu 96.5 0.0027 9.1E-08 67.1 5.9 59 205-278 182-243 (646)
183 4e22_A Cytidylate kinase; P-lo 96.4 0.0019 6.4E-08 60.0 4.0 30 245-274 29-58 (252)
184 1jr3_D DNA polymerase III, del 96.4 0.005 1.7E-07 59.4 7.2 135 242-389 17-188 (343)
185 2qor_A Guanylate kinase; phosp 96.4 0.0016 5.5E-08 58.2 3.4 29 240-268 9-37 (204)
186 2qt1_A Nicotinamide riboside k 96.4 0.0012 3.9E-08 59.1 2.4 31 245-275 23-54 (207)
187 1ye8_A Protein THEP1, hypothet 96.4 0.0015 5.3E-08 57.6 3.0 27 246-272 3-29 (178)
188 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0013 4.5E-08 59.0 2.4 39 239-277 19-60 (235)
189 1nn5_A Similar to deoxythymidy 96.4 0.00067 2.3E-08 60.5 0.4 25 244-268 10-34 (215)
190 3zvl_A Bifunctional polynucleo 96.3 0.0012 4.1E-08 66.1 2.1 33 243-275 258-290 (416)
191 3hr8_A Protein RECA; alpha and 96.3 0.003 1E-07 62.0 4.8 40 239-278 57-99 (356)
192 2bdt_A BH3686; alpha-beta prot 96.3 0.002 7E-08 56.5 3.3 25 245-269 4-28 (189)
193 3d3q_A TRNA delta(2)-isopenten 96.2 0.002 6.8E-08 62.9 3.1 34 244-277 8-41 (340)
194 3exa_A TRNA delta(2)-isopenten 96.2 0.0023 8E-08 61.7 3.5 35 245-279 5-39 (322)
195 2yvu_A Probable adenylyl-sulfa 96.2 0.0032 1.1E-07 55.1 4.1 32 244-275 14-48 (186)
196 1pzn_A RAD51, DNA repair and r 96.2 0.004 1.4E-07 60.8 5.2 52 239-290 127-187 (349)
197 2f6r_A COA synthase, bifunctio 96.2 0.0018 6.2E-08 61.3 2.5 31 244-275 76-106 (281)
198 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.1E-08 57.6 3.5 40 239-278 19-61 (247)
199 1kgd_A CASK, peripheral plasma 96.2 0.0026 8.9E-08 55.7 3.2 25 244-268 6-30 (180)
200 2i1q_A DNA repair and recombin 96.2 0.0036 1.2E-07 60.0 4.5 51 239-289 94-163 (322)
201 2j41_A Guanylate kinase; GMP, 96.1 0.0023 7.9E-08 56.6 2.8 25 243-267 6-30 (207)
202 3fdi_A Uncharacterized protein 96.1 0.0021 7.3E-08 57.7 2.5 29 245-273 8-36 (201)
203 3cmu_A Protein RECA, recombina 96.1 0.0028 9.5E-08 74.4 3.9 38 240-277 1424-1464(2050)
204 1u94_A RECA protein, recombina 96.1 0.0034 1.2E-07 61.6 4.0 39 239-277 59-100 (356)
205 2zts_A Putative uncharacterize 96.1 0.0038 1.3E-07 56.7 4.0 39 239-277 26-68 (251)
206 1m7g_A Adenylylsulfate kinase; 96.0 0.0032 1.1E-07 56.5 3.2 33 243-275 25-61 (211)
207 2ehv_A Hypothetical protein PH 96.0 0.0024 8.2E-08 58.1 2.4 26 239-264 26-51 (251)
208 2zr9_A Protein RECA, recombina 96.0 0.0036 1.2E-07 61.2 3.5 40 239-278 57-99 (349)
209 1ex7_A Guanylate kinase; subst 95.9 0.004 1.4E-07 55.5 3.3 26 244-269 2-27 (186)
210 1rz3_A Hypothetical protein rb 95.9 0.0099 3.4E-07 52.9 5.9 34 244-277 23-59 (201)
211 3b9q_A Chloroplast SRP recepto 95.9 0.0059 2E-07 58.5 4.7 53 215-267 70-124 (302)
212 3gmt_A Adenylate kinase; ssgci 95.9 0.0032 1.1E-07 58.1 2.5 29 246-274 11-39 (230)
213 3c8u_A Fructokinase; YP_612366 95.9 0.0074 2.5E-07 54.0 4.9 25 244-268 23-47 (208)
214 3tr0_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 54.8 3.1 25 244-268 8-32 (205)
215 3lda_A DNA repair protein RAD5 95.8 0.0084 2.9E-07 59.8 5.4 51 239-289 174-233 (400)
216 1xp8_A RECA protein, recombina 95.8 0.005 1.7E-07 60.7 3.5 40 239-278 70-112 (366)
217 3eph_A TRNA isopentenyltransfe 95.7 0.0044 1.5E-07 61.8 2.8 33 244-276 3-35 (409)
218 1lvg_A Guanylate kinase, GMP k 95.7 0.0046 1.6E-07 55.1 2.6 25 243-267 4-28 (198)
219 2og2_A Putative signal recogni 95.6 0.0082 2.8E-07 59.0 4.5 53 215-267 127-181 (359)
220 1nlf_A Regulatory protein REPA 95.6 0.0036 1.2E-07 58.7 1.9 29 239-267 26-54 (279)
221 3a00_A Guanylate kinase, GMP k 95.6 0.0051 1.8E-07 54.0 2.7 25 244-268 2-26 (186)
222 3e1s_A Exodeoxyribonuclease V, 95.6 0.0072 2.4E-07 63.1 4.1 34 244-277 205-241 (574)
223 3asz_A Uridine kinase; cytidin 95.6 0.0041 1.4E-07 55.4 2.0 31 245-275 8-40 (211)
224 1vma_A Cell division protein F 95.5 0.0084 2.9E-07 57.6 4.1 59 217-276 79-140 (306)
225 3io5_A Recombination and repai 95.5 0.0098 3.3E-07 57.5 4.4 39 240-279 26-69 (333)
226 3kl4_A SRP54, signal recogniti 95.5 0.0088 3E-07 60.2 4.2 61 215-276 69-133 (433)
227 1x6v_B Bifunctional 3'-phospho 95.5 0.007 2.4E-07 63.7 3.6 33 244-276 53-88 (630)
228 3hdt_A Putative kinase; struct 95.5 0.0053 1.8E-07 56.2 2.4 30 245-274 16-45 (223)
229 3dm5_A SRP54, signal recogniti 95.5 0.013 4.4E-07 59.2 5.3 61 215-276 73-136 (443)
230 1c9k_A COBU, adenosylcobinamid 95.5 0.011 3.9E-07 52.3 4.4 32 246-278 2-33 (180)
231 2gk6_A Regulator of nonsense t 95.4 0.0093 3.2E-07 62.8 4.4 33 245-277 197-233 (624)
232 3ney_A 55 kDa erythrocyte memb 95.4 0.0079 2.7E-07 54.1 3.3 25 244-268 20-44 (197)
233 2yhs_A FTSY, cell division pro 95.4 0.0098 3.3E-07 60.8 4.1 24 244-267 294-317 (503)
234 2v9p_A Replication protein E1; 95.4 0.0074 2.5E-07 57.9 3.1 30 239-268 122-151 (305)
235 1cr0_A DNA primase/helicase; R 95.4 0.0059 2E-07 57.6 2.4 39 239-277 31-73 (296)
236 1a7j_A Phosphoribulokinase; tr 95.3 0.0047 1.6E-07 58.7 1.5 36 245-280 7-45 (290)
237 1htw_A HI0065; nucleotide-bind 95.3 0.0092 3.1E-07 51.6 3.2 25 243-267 33-57 (158)
238 1z6g_A Guanylate kinase; struc 95.3 0.0081 2.8E-07 54.4 2.9 25 243-267 23-47 (218)
239 1p9r_A General secretion pathw 95.2 0.018 6.2E-07 57.7 5.5 49 205-268 143-192 (418)
240 1gtv_A TMK, thymidylate kinase 95.2 0.0027 9.3E-08 56.5 -0.5 24 246-269 3-26 (214)
241 4eaq_A DTMP kinase, thymidylat 95.1 0.0086 2.9E-07 54.8 2.6 30 245-274 28-59 (229)
242 1znw_A Guanylate kinase, GMP k 95.1 0.01 3.4E-07 53.0 2.9 25 244-268 21-45 (207)
243 4gp7_A Metallophosphoesterase; 95.1 0.0067 2.3E-07 52.7 1.6 21 244-264 10-30 (171)
244 3e70_C DPA, signal recognition 95.0 0.024 8.3E-07 54.8 5.6 52 216-267 98-153 (328)
245 2eyu_A Twitching motility prot 95.0 0.012 4.1E-07 55.1 3.2 24 244-267 26-49 (261)
246 3tqf_A HPR(Ser) kinase; transf 95.0 0.012 4.1E-07 51.9 2.9 30 243-273 16-45 (181)
247 2v3c_C SRP54, signal recogniti 95.0 0.016 5.5E-07 58.3 4.2 50 217-267 73-123 (432)
248 1s96_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 53.5 3.0 28 241-268 14-41 (219)
249 2wjy_A Regulator of nonsense t 94.9 0.016 5.6E-07 62.7 4.4 32 245-276 373-408 (800)
250 2j37_W Signal recognition part 94.9 0.023 7.9E-07 58.3 5.3 59 216-276 74-137 (504)
251 2axn_A 6-phosphofructo-2-kinas 94.9 0.013 4.3E-07 60.5 3.2 27 244-270 36-62 (520)
252 1zu4_A FTSY; GTPase, signal re 94.8 0.016 5.6E-07 55.8 3.7 60 217-276 74-141 (320)
253 3lnc_A Guanylate kinase, GMP k 94.8 0.0091 3.1E-07 54.2 1.8 24 244-267 28-52 (231)
254 2ewv_A Twitching motility prot 94.8 0.012 4.1E-07 58.0 2.7 29 240-268 133-161 (372)
255 2i3b_A HCR-ntpase, human cance 94.8 0.012 4E-07 52.4 2.5 22 246-267 4-25 (189)
256 2jeo_A Uridine-cytidine kinase 94.8 0.013 4.5E-07 53.8 2.8 25 246-270 28-52 (245)
257 1odf_A YGR205W, hypothetical 3 94.8 0.014 4.7E-07 55.6 2.9 26 244-269 32-57 (290)
258 3tqc_A Pantothenate kinase; bi 94.7 0.032 1.1E-06 53.9 5.4 24 245-268 94-117 (321)
259 4i1u_A Dephospho-COA kinase; s 94.6 0.017 5.7E-07 52.5 3.1 31 245-276 11-41 (210)
260 3bh0_A DNAB-like replicative h 94.6 0.015 5.2E-07 55.7 3.0 39 239-277 64-105 (315)
261 3jvv_A Twitching mobility prot 94.6 0.014 4.6E-07 57.3 2.6 24 245-268 125-148 (356)
262 2orw_A Thymidine kinase; TMTK, 94.6 0.019 6.5E-07 50.7 3.3 30 245-274 5-37 (184)
263 2r8r_A Sensor protein; KDPD, P 94.6 0.022 7.7E-07 52.2 3.7 33 245-277 8-43 (228)
264 2xxa_A Signal recognition part 94.5 0.03 1E-06 56.3 4.9 61 217-277 74-138 (433)
265 1np6_A Molybdopterin-guanine d 94.5 0.018 6.1E-07 50.6 2.8 25 243-267 6-30 (174)
266 1p5z_B DCK, deoxycytidine kina 94.5 0.0087 3E-07 55.6 0.8 28 245-272 26-54 (263)
267 1w36_D RECD, exodeoxyribonucle 94.5 0.023 7.7E-07 59.7 4.0 24 244-267 165-188 (608)
268 2ged_A SR-beta, signal recogni 94.5 0.032 1.1E-06 48.3 4.4 25 243-267 48-72 (193)
269 1j8m_F SRP54, signal recogniti 94.4 0.044 1.5E-06 52.2 5.6 60 216-277 71-135 (297)
270 1m8p_A Sulfate adenylyltransfe 94.4 0.018 6E-07 60.1 3.0 32 245-276 398-433 (573)
271 2xzl_A ATP-dependent helicase 94.3 0.023 7.9E-07 61.6 3.8 33 245-277 377-413 (802)
272 2px0_A Flagellar biosynthesis 94.3 0.025 8.5E-07 53.9 3.6 59 216-277 80-143 (296)
273 1sq5_A Pantothenate kinase; P- 94.3 0.016 5.4E-07 55.4 2.2 24 245-268 82-105 (308)
274 1bif_A 6-phosphofructo-2-kinas 94.3 0.0093 3.2E-07 60.5 0.6 28 244-271 40-67 (469)
275 1z6t_A APAF-1, apoptotic prote 94.2 0.037 1.3E-06 57.2 5.0 49 207-266 122-170 (591)
276 2q6t_A DNAB replication FORK h 94.2 0.031 1E-06 56.2 4.2 39 239-277 196-238 (444)
277 3v9p_A DTMP kinase, thymidylat 94.1 0.03 1E-06 51.3 3.6 30 246-275 28-64 (227)
278 3kta_A Chromosome segregation 94.1 0.02 6.8E-07 49.6 2.3 23 246-268 29-51 (182)
279 2dyk_A GTP-binding protein; GT 94.1 0.022 7.7E-07 47.4 2.5 23 245-267 3-25 (161)
280 2ocp_A DGK, deoxyguanosine kin 94.1 0.024 8.3E-07 51.7 2.9 24 245-268 4-27 (241)
281 2r6a_A DNAB helicase, replicat 94.0 0.024 8.3E-07 57.1 3.0 39 239-277 199-241 (454)
282 2oap_1 GSPE-2, type II secreti 94.0 0.018 6E-07 59.3 2.0 26 243-268 260-285 (511)
283 1nrj_B SR-beta, signal recogni 94.0 0.022 7.6E-07 50.5 2.4 24 244-267 13-36 (218)
284 2f9l_A RAB11B, member RAS onco 94.0 0.022 7.6E-07 50.0 2.4 23 245-267 7-29 (199)
285 1rj9_A FTSY, signal recognitio 94.0 0.026 9E-07 54.0 3.0 25 243-267 102-126 (304)
286 1kao_A RAP2A; GTP-binding prot 93.9 0.025 8.7E-07 47.1 2.5 22 245-266 5-26 (167)
287 3ice_A Transcription terminati 93.9 0.097 3.3E-06 52.0 6.9 23 245-267 176-198 (422)
288 2b8t_A Thymidine kinase; deoxy 93.9 0.038 1.3E-06 50.5 3.8 30 246-275 15-47 (223)
289 3b85_A Phosphate starvation-in 93.9 0.025 8.7E-07 51.0 2.6 22 245-266 24-45 (208)
290 3cmu_A Protein RECA, recombina 93.8 0.033 1.1E-06 65.6 3.9 41 239-279 1077-1120(2050)
291 1oix_A RAS-related protein RAB 93.8 0.022 7.6E-07 49.8 2.0 23 245-267 31-53 (191)
292 3cmw_A Protein RECA, recombina 93.8 0.044 1.5E-06 63.7 4.8 41 239-279 30-73 (1706)
293 4a1f_A DNAB helicase, replicat 93.8 0.044 1.5E-06 53.3 4.3 39 239-277 42-83 (338)
294 3aez_A Pantothenate kinase; tr 93.8 0.029 9.8E-07 53.9 2.9 24 245-268 92-115 (312)
295 2wji_A Ferrous iron transport 93.8 0.023 8E-07 48.2 2.0 22 245-266 5-26 (165)
296 1z2a_A RAS-related protein RAB 93.8 0.026 9E-07 47.2 2.3 22 245-266 7-28 (168)
297 3bgw_A DNAB-like replicative h 93.7 0.038 1.3E-06 55.7 3.9 39 240-278 194-235 (444)
298 2nzj_A GTP-binding protein REM 93.7 0.025 8.5E-07 47.8 2.1 22 245-266 6-27 (175)
299 1g8f_A Sulfate adenylyltransfe 93.7 0.022 7.5E-07 58.5 2.0 26 244-269 396-421 (511)
300 1ek0_A Protein (GTP-binding pr 93.7 0.029 9.9E-07 47.0 2.4 23 245-267 5-27 (170)
301 1xjc_A MOBB protein homolog; s 93.6 0.029 1E-06 49.1 2.5 32 244-275 5-39 (169)
302 1z0j_A RAB-22, RAS-related pro 93.6 0.03 1E-06 47.0 2.5 23 245-267 8-30 (170)
303 1u8z_A RAS-related protein RAL 93.6 0.031 1E-06 46.6 2.4 22 245-266 6-27 (168)
304 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.031 1.1E-06 47.4 2.5 22 245-266 9-30 (177)
305 1q57_A DNA primase/helicase; d 93.5 0.03 1E-06 57.1 2.7 39 240-278 239-281 (503)
306 1z08_A RAS-related protein RAB 93.5 0.033 1.1E-06 46.8 2.5 22 245-266 8-29 (170)
307 2ce2_X GTPase HRAS; signaling 93.5 0.027 9.3E-07 46.8 1.9 23 245-267 5-27 (166)
308 2zej_A Dardarin, leucine-rich 93.5 0.023 8E-07 49.2 1.5 21 246-266 5-25 (184)
309 2erx_A GTP-binding protein DI- 93.5 0.031 1.1E-06 46.9 2.3 22 245-266 5-26 (172)
310 1ky3_A GTP-binding protein YPT 93.4 0.034 1.2E-06 47.2 2.5 24 244-267 9-32 (182)
311 2hxs_A RAB-26, RAS-related pro 93.4 0.035 1.2E-06 47.1 2.5 22 245-266 8-29 (178)
312 1r2q_A RAS-related protein RAB 93.4 0.034 1.2E-06 46.5 2.4 22 245-266 8-29 (170)
313 1fx0_A ATP synthase alpha chai 93.4 0.099 3.4E-06 53.4 6.2 46 246-291 166-212 (507)
314 2onk_A Molybdate/tungstate ABC 93.4 0.031 1.1E-06 51.6 2.3 25 244-268 25-49 (240)
315 2cbz_A Multidrug resistance-as 93.4 0.024 8.2E-07 52.1 1.5 24 244-267 32-55 (237)
316 1lw7_A Transcriptional regulat 93.3 0.03 1E-06 54.6 2.2 28 243-270 170-197 (365)
317 4edh_A DTMP kinase, thymidylat 93.3 0.034 1.2E-06 50.4 2.4 46 246-291 9-58 (213)
318 2wjg_A FEOB, ferrous iron tran 93.3 0.033 1.1E-06 47.9 2.2 22 245-266 9-30 (188)
319 3q85_A GTP-binding protein REM 93.3 0.031 1.1E-06 47.0 2.0 20 246-265 5-24 (169)
320 1g16_A RAS-related protein SEC 93.3 0.03 1E-06 47.0 1.9 22 245-266 5-26 (170)
321 2qe7_A ATP synthase subunit al 93.3 0.1 3.4E-06 53.3 6.1 34 241-274 158-194 (502)
322 1c1y_A RAS-related protein RAP 93.3 0.036 1.2E-06 46.3 2.4 22 245-266 5-26 (167)
323 1r8s_A ADP-ribosylation factor 93.3 0.037 1.3E-06 46.3 2.4 21 246-266 3-23 (164)
324 3p32_A Probable GTPase RV1496/ 93.3 0.051 1.7E-06 52.9 3.7 32 244-275 80-114 (355)
325 3tif_A Uncharacterized ABC tra 93.3 0.029 1E-06 51.5 1.9 25 245-269 33-57 (235)
326 3tmk_A Thymidylate kinase; pho 93.3 0.045 1.6E-06 49.7 3.2 31 245-275 7-37 (216)
327 3bc1_A RAS-related protein RAB 93.2 0.037 1.3E-06 47.4 2.4 23 244-266 12-34 (195)
328 2gza_A Type IV secretion syste 93.2 0.025 8.5E-07 55.4 1.3 26 243-268 175-200 (361)
329 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.038 1.3E-06 46.9 2.4 22 246-267 26-47 (149)
330 2pcj_A ABC transporter, lipopr 93.1 0.025 8.6E-07 51.5 1.2 24 245-268 32-55 (224)
331 3clv_A RAB5 protein, putative; 93.1 0.041 1.4E-06 47.4 2.5 22 245-266 9-30 (208)
332 1upt_A ARL1, ADP-ribosylation 93.1 0.041 1.4E-06 46.3 2.4 23 244-266 8-30 (171)
333 4dsu_A GTPase KRAS, isoform 2B 93.1 0.041 1.4E-06 47.1 2.5 23 245-267 6-28 (189)
334 2ffh_A Protein (FFH); SRP54, s 93.1 0.074 2.5E-06 53.3 4.7 59 216-276 73-134 (425)
335 1sgw_A Putative ABC transporte 93.0 0.033 1.1E-06 50.5 1.8 25 245-269 37-61 (214)
336 1z0f_A RAB14, member RAS oncog 93.0 0.042 1.4E-06 46.5 2.4 24 244-267 16-39 (179)
337 2obl_A ESCN; ATPase, hydrolase 93.0 0.059 2E-06 52.5 3.7 28 246-273 74-101 (347)
338 2fz4_A DNA repair protein RAD2 93.0 0.062 2.1E-06 49.2 3.7 33 245-277 110-142 (237)
339 3sop_A Neuronal-specific septi 93.0 0.034 1.1E-06 52.2 1.9 24 245-268 4-27 (270)
340 2y8e_A RAB-protein 6, GH09086P 93.0 0.036 1.2E-06 46.9 1.9 22 245-266 16-37 (179)
341 2efe_B Small GTP-binding prote 92.9 0.045 1.5E-06 46.5 2.5 22 245-266 14-35 (181)
342 2oil_A CATX-8, RAS-related pro 92.9 0.043 1.5E-06 47.5 2.4 22 245-266 27-48 (193)
343 1b0u_A Histidine permease; ABC 92.9 0.036 1.2E-06 51.8 2.0 24 246-269 35-58 (262)
344 2pze_A Cystic fibrosis transme 92.9 0.034 1.2E-06 50.8 1.7 25 244-268 35-59 (229)
345 1mv5_A LMRA, multidrug resista 92.9 0.034 1.2E-06 51.2 1.8 24 245-268 30-53 (243)
346 2lkc_A Translation initiation 92.9 0.052 1.8E-06 46.0 2.8 23 244-266 9-31 (178)
347 2dpy_A FLII, flagellum-specifi 92.9 0.072 2.5E-06 53.6 4.3 28 246-273 160-187 (438)
348 1g6h_A High-affinity branched- 92.8 0.03 1E-06 52.1 1.4 24 246-269 36-59 (257)
349 3q72_A GTP-binding protein RAD 92.8 0.035 1.2E-06 46.5 1.6 20 246-265 5-24 (166)
350 3con_A GTPase NRAS; structural 92.8 0.046 1.6E-06 47.1 2.4 23 245-267 23-45 (190)
351 2a9k_A RAS-related protein RAL 92.8 0.046 1.6E-06 46.6 2.4 23 244-266 19-41 (187)
352 2d2e_A SUFC protein; ABC-ATPas 92.8 0.041 1.4E-06 50.9 2.2 22 245-266 31-52 (250)
353 2pt7_A CAG-ALFA; ATPase, prote 92.7 0.029 1E-06 54.2 1.1 26 243-268 171-196 (330)
354 3tw8_B RAS-related protein RAB 92.7 0.046 1.6E-06 46.3 2.2 22 245-266 11-32 (181)
355 1tf7_A KAIC; homohexamer, hexa 92.7 0.038 1.3E-06 56.8 2.0 29 239-267 277-305 (525)
356 2zu0_C Probable ATP-dependent 92.7 0.046 1.6E-06 51.2 2.4 23 245-267 48-70 (267)
357 3gfo_A Cobalt import ATP-bindi 92.7 0.039 1.3E-06 52.1 1.8 23 246-268 37-59 (275)
358 2fn4_A P23, RAS-related protei 92.7 0.043 1.5E-06 46.5 2.0 22 245-266 11-32 (181)
359 2atv_A RERG, RAS-like estrogen 92.7 0.053 1.8E-06 47.2 2.6 23 244-266 29-51 (196)
360 2wsm_A Hydrogenase expression/ 92.7 0.044 1.5E-06 48.7 2.1 25 244-268 31-55 (221)
361 2gj8_A MNME, tRNA modification 92.6 0.039 1.3E-06 47.4 1.7 23 245-267 6-28 (172)
362 2r9v_A ATP synthase subunit al 92.6 0.086 3E-06 53.8 4.5 29 246-274 178-207 (515)
363 2ixe_A Antigen peptide transpo 92.6 0.037 1.3E-06 52.0 1.7 24 245-268 47-70 (271)
364 2olj_A Amino acid ABC transpor 92.6 0.041 1.4E-06 51.5 2.0 24 245-268 52-75 (263)
365 2p5s_A RAS and EF-hand domain 92.6 0.05 1.7E-06 47.6 2.4 23 244-266 29-51 (199)
366 2bme_A RAB4A, RAS-related prot 92.6 0.043 1.5E-06 47.0 1.9 22 245-266 12-33 (186)
367 1m7b_A RND3/RHOE small GTP-bin 92.6 0.043 1.5E-06 47.3 1.9 22 245-266 9-30 (184)
368 2g6b_A RAS-related protein RAB 92.6 0.052 1.8E-06 46.1 2.4 23 245-267 12-34 (180)
369 2gf9_A RAS-related protein RAB 92.6 0.052 1.8E-06 46.9 2.4 23 245-267 24-46 (189)
370 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.053 1.8E-06 46.3 2.4 22 245-266 7-28 (186)
371 3kkq_A RAS-related protein M-R 92.6 0.053 1.8E-06 46.4 2.4 22 245-266 20-41 (183)
372 1yrb_A ATP(GTP)binding protein 92.6 0.077 2.6E-06 48.5 3.7 31 245-275 16-48 (262)
373 2ff7_A Alpha-hemolysin translo 92.6 0.039 1.3E-06 51.1 1.7 25 245-269 37-61 (247)
374 3t1o_A Gliding protein MGLA; G 92.5 0.054 1.8E-06 46.6 2.5 23 245-267 16-38 (198)
375 2ghi_A Transport protein; mult 92.5 0.041 1.4E-06 51.3 1.8 25 244-268 47-71 (260)
376 1ls1_A Signal recognition part 92.5 0.11 3.6E-06 49.4 4.7 34 243-276 98-134 (295)
377 2qi9_C Vitamin B12 import ATP- 92.5 0.04 1.4E-06 51.1 1.7 25 245-269 28-52 (249)
378 3lv8_A DTMP kinase, thymidylat 92.5 0.044 1.5E-06 50.5 1.9 24 245-268 29-52 (236)
379 2www_A Methylmalonic aciduria 92.4 0.14 4.7E-06 49.8 5.5 23 245-267 76-98 (349)
380 2cxx_A Probable GTP-binding pr 92.4 0.038 1.3E-06 47.4 1.3 21 246-266 4-24 (190)
381 1ji0_A ABC transporter; ATP bi 92.4 0.042 1.4E-06 50.5 1.7 24 245-268 34-57 (240)
382 1svi_A GTP-binding protein YSX 92.4 0.055 1.9E-06 46.8 2.3 23 244-266 24-46 (195)
383 2ihy_A ABC transporter, ATP-bi 92.4 0.044 1.5E-06 51.7 1.8 24 246-269 50-73 (279)
384 3tkl_A RAS-related protein RAB 92.4 0.057 1.9E-06 46.6 2.4 23 245-267 18-40 (196)
385 3bwd_D RAC-like GTP-binding pr 92.4 0.058 2E-06 45.9 2.4 24 244-267 9-32 (182)
386 1x3s_A RAS-related protein RAB 92.4 0.057 2E-06 46.5 2.4 22 245-266 17-38 (195)
387 2a5y_B CED-4; apoptosis; HET: 92.4 0.13 4.6E-06 52.8 5.6 44 212-265 131-174 (549)
388 3c5c_A RAS-like protein 12; GD 92.3 0.06 2E-06 46.7 2.5 22 245-266 23-44 (187)
389 2iwr_A Centaurin gamma 1; ANK 92.3 0.045 1.5E-06 46.6 1.6 22 245-266 9-30 (178)
390 1vpl_A ABC transporter, ATP-bi 92.3 0.047 1.6E-06 50.8 1.9 24 245-268 43-66 (256)
391 1z06_A RAS-related protein RAB 92.3 0.061 2.1E-06 46.4 2.5 22 245-266 22-43 (189)
392 2bov_A RAla, RAS-related prote 92.3 0.06 2E-06 46.9 2.4 22 245-266 16-37 (206)
393 1vg8_A RAS-related protein RAB 92.2 0.061 2.1E-06 46.9 2.5 24 244-267 9-32 (207)
394 1zbd_A Rabphilin-3A; G protein 92.2 0.056 1.9E-06 47.2 2.2 24 244-267 9-32 (203)
395 2qm8_A GTPase/ATPase; G protei 92.2 0.058 2E-06 52.3 2.5 23 245-267 57-79 (337)
396 2nq2_C Hypothetical ABC transp 92.2 0.045 1.5E-06 50.8 1.7 24 245-268 33-56 (253)
397 1zd9_A ADP-ribosylation factor 92.2 0.061 2.1E-06 46.5 2.4 22 245-266 24-45 (188)
398 2yz2_A Putative ABC transporte 92.2 0.048 1.6E-06 51.0 1.8 24 245-268 35-58 (266)
399 1m2o_B GTP-binding protein SAR 92.2 0.052 1.8E-06 47.3 1.9 22 245-266 25-46 (190)
400 3ihw_A Centg3; RAS, centaurin, 92.2 0.064 2.2E-06 46.5 2.5 22 245-266 22-43 (184)
401 1tf7_A KAIC; homohexamer, hexa 92.2 0.048 1.6E-06 56.0 1.9 39 240-278 36-78 (525)
402 1z47_A CYSA, putative ABC-tran 92.2 0.054 1.8E-06 53.0 2.2 23 246-268 44-66 (355)
403 1knx_A Probable HPR(Ser) kinas 92.2 0.061 2.1E-06 51.7 2.5 31 242-273 146-176 (312)
404 3fvq_A Fe(3+) IONS import ATP- 92.1 0.046 1.6E-06 53.6 1.7 23 246-268 33-55 (359)
405 4g1u_C Hemin import ATP-bindin 92.1 0.049 1.7E-06 51.0 1.8 24 245-268 39-62 (266)
406 2it1_A 362AA long hypothetical 92.1 0.056 1.9E-06 53.0 2.3 23 246-268 32-54 (362)
407 3vr4_A V-type sodium ATPase ca 92.1 0.18 6.1E-06 52.3 6.0 45 246-291 235-279 (600)
408 3reg_A RHO-like small GTPase; 92.1 0.065 2.2E-06 46.5 2.4 23 245-267 25-47 (194)
409 3cph_A RAS-related protein SEC 92.1 0.064 2.2E-06 47.0 2.4 23 244-266 21-43 (213)
410 2a5j_A RAS-related protein RAB 92.1 0.064 2.2E-06 46.5 2.4 23 245-267 23-45 (191)
411 2gxq_A Heat resistant RNA depe 92.0 0.083 2.9E-06 46.3 3.1 57 207-266 2-62 (207)
412 2yyz_A Sugar ABC transporter, 92.0 0.057 2E-06 52.9 2.2 23 246-268 32-54 (359)
413 3rlf_A Maltose/maltodextrin im 92.0 0.058 2E-06 53.3 2.3 23 246-268 32-54 (381)
414 1ko7_A HPR kinase/phosphatase; 92.0 0.076 2.6E-06 51.1 3.0 29 243-272 144-172 (314)
415 3ld9_A DTMP kinase, thymidylat 92.0 0.064 2.2E-06 49.0 2.4 28 246-273 24-55 (223)
416 1ksh_A ARF-like protein 2; sma 92.0 0.052 1.8E-06 46.6 1.7 24 244-267 19-42 (186)
417 2fg5_A RAB-22B, RAS-related pr 92.0 0.057 2E-06 46.9 2.0 23 245-267 25-47 (192)
418 3k53_A Ferrous iron transport 92.0 0.05 1.7E-06 50.6 1.7 23 244-266 4-26 (271)
419 3dz8_A RAS-related protein RAB 92.0 0.057 1.9E-06 46.8 1.9 23 245-267 25-47 (191)
420 3pqc_A Probable GTP-binding pr 92.0 0.049 1.7E-06 46.8 1.5 24 244-267 24-47 (195)
421 2fu5_C RAS-related protein RAB 92.0 0.045 1.5E-06 46.8 1.2 23 244-266 9-31 (183)
422 2pjz_A Hypothetical protein ST 91.9 0.052 1.8E-06 50.8 1.7 23 245-267 32-54 (263)
423 3lxx_A GTPase IMAP family memb 91.9 0.065 2.2E-06 48.6 2.3 24 244-267 30-53 (239)
424 3t5g_A GTP-binding protein RHE 91.9 0.06 2.1E-06 45.9 1.9 23 244-266 7-29 (181)
425 1g29_1 MALK, maltose transport 91.9 0.061 2.1E-06 52.9 2.2 24 245-268 31-54 (372)
426 1v43_A Sugar-binding transport 91.8 0.061 2.1E-06 53.0 2.2 23 246-268 40-62 (372)
427 2bcg_Y Protein YP2, GTP-bindin 91.8 0.06 2.1E-06 47.2 1.9 22 245-266 10-31 (206)
428 3oaa_A ATP synthase subunit al 91.8 0.15 5.2E-06 51.9 5.1 29 246-274 165-194 (513)
429 1pui_A ENGB, probable GTP-bind 91.8 0.028 9.5E-07 49.5 -0.3 23 245-267 28-50 (210)
430 4tmk_A Protein (thymidylate ki 91.8 0.061 2.1E-06 48.7 2.0 45 246-290 6-55 (213)
431 2c61_A A-type ATP synthase non 91.8 0.16 5.4E-06 51.5 5.2 24 246-269 155-178 (469)
432 1t6n_A Probable ATP-dependent 91.7 0.16 5.5E-06 45.1 4.7 59 204-265 12-73 (220)
433 2rcn_A Probable GTPase ENGC; Y 91.7 0.064 2.2E-06 52.6 2.1 24 245-268 217-240 (358)
434 2hf9_A Probable hydrogenase ni 91.6 0.063 2.2E-06 47.9 1.9 24 244-267 39-62 (226)
435 3oes_A GTPase rhebl1; small GT 91.6 0.065 2.2E-06 46.9 1.9 23 245-267 26-48 (201)
436 2b6h_A ADP-ribosylation factor 91.6 0.077 2.6E-06 46.2 2.4 22 244-265 30-51 (192)
437 2fh5_B SR-beta, signal recogni 91.6 0.079 2.7E-06 46.7 2.4 23 244-266 8-30 (214)
438 1moz_A ARL1, ADP-ribosylation 91.6 0.068 2.3E-06 45.6 1.9 23 243-265 18-40 (183)
439 2qag_B Septin-6, protein NEDD5 91.6 0.088 3E-06 52.8 3.0 21 246-266 45-65 (427)
440 3qks_A DNA double-strand break 91.5 0.077 2.6E-06 47.4 2.4 24 246-269 26-49 (203)
441 3gqb_A V-type ATP synthase alp 91.5 0.19 6.6E-06 51.8 5.5 29 246-274 224-252 (578)
442 2gf0_A GTP-binding protein DI- 91.5 0.069 2.4E-06 46.2 2.0 22 245-266 10-31 (199)
443 3cr8_A Sulfate adenylyltranfer 91.5 0.042 1.5E-06 56.9 0.6 24 245-268 371-394 (552)
444 1fzq_A ADP-ribosylation factor 91.4 0.047 1.6E-06 47.1 0.8 23 244-266 17-39 (181)
445 2f1r_A Molybdopterin-guanine d 91.4 0.034 1.2E-06 48.6 -0.1 24 245-268 4-27 (171)
446 1gwn_A RHO-related GTP-binding 91.4 0.071 2.4E-06 47.3 1.9 22 245-266 30-51 (205)
447 2cjw_A GTP-binding protein GEM 91.3 0.09 3.1E-06 45.9 2.5 22 245-266 8-29 (192)
448 1dek_A Deoxynucleoside monopho 91.3 0.082 2.8E-06 48.9 2.3 26 246-271 4-29 (241)
449 2q3h_A RAS homolog gene family 91.3 0.077 2.6E-06 46.2 2.0 22 245-266 22-43 (201)
450 2gks_A Bifunctional SAT/APS ki 91.3 0.073 2.5E-06 55.1 2.1 32 244-275 373-407 (546)
451 1tq4_A IIGP1, interferon-induc 91.2 0.14 4.7E-06 51.2 4.0 21 246-266 72-92 (413)
452 1zj6_A ADP-ribosylation factor 91.2 0.07 2.4E-06 46.0 1.7 23 244-266 17-39 (187)
453 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.083 2.8E-06 53.5 2.4 25 243-267 138-162 (460)
454 2ew1_A RAS-related protein RAB 91.2 0.077 2.6E-06 46.9 1.9 22 245-266 28-49 (201)
455 3d31_A Sulfate/molybdate ABC t 91.1 0.052 1.8E-06 53.0 0.8 23 246-268 29-51 (348)
456 1qhl_A Protein (cell division 91.1 0.037 1.3E-06 50.7 -0.3 23 246-268 30-52 (227)
457 2f7s_A C25KG, RAS-related prot 91.1 0.082 2.8E-06 46.7 2.0 22 245-266 27-48 (217)
458 1hv8_A Putative ATP-dependent 91.0 0.22 7.5E-06 47.2 5.2 57 206-265 6-66 (367)
459 2atx_A Small GTP binding prote 91.0 0.082 2.8E-06 45.7 2.0 22 245-266 20-41 (194)
460 2h17_A ADP-ribosylation factor 91.0 0.066 2.2E-06 46.0 1.2 22 245-266 23-44 (181)
461 2o52_A RAS-related protein RAB 91.0 0.072 2.5E-06 46.7 1.5 23 244-266 26-48 (200)
462 1u0l_A Probable GTPase ENGC; p 91.0 0.078 2.7E-06 50.3 1.9 24 245-268 171-194 (301)
463 2bbs_A Cystic fibrosis transme 91.0 0.067 2.3E-06 50.8 1.4 32 237-268 56-89 (290)
464 4hlc_A DTMP kinase, thymidylat 90.9 0.16 5.3E-06 45.6 3.8 46 246-291 5-53 (205)
465 1f6b_A SAR1; gtpases, N-termin 90.9 0.049 1.7E-06 47.9 0.4 21 245-265 27-47 (198)
466 2fv8_A H6, RHO-related GTP-bin 90.9 0.085 2.9E-06 46.4 2.0 23 244-266 26-48 (207)
467 3sfz_A APAF-1, apoptotic pepti 90.9 0.33 1.1E-05 54.0 7.1 51 205-266 120-170 (1249)
468 3a1s_A Iron(II) transport prot 90.9 0.094 3.2E-06 48.6 2.3 22 245-266 7-28 (258)
469 2yv5_A YJEQ protein; hydrolase 90.8 0.1 3.5E-06 49.7 2.6 23 245-268 167-189 (302)
470 2qu8_A Putative nucleolar GTP- 90.8 0.08 2.7E-06 47.5 1.7 23 244-266 30-52 (228)
471 3cbq_A GTP-binding protein REM 90.8 0.08 2.7E-06 46.4 1.6 21 245-265 25-45 (195)
472 3cpj_B GTP-binding protein YPT 90.7 0.11 3.6E-06 46.5 2.4 22 245-266 15-36 (223)
473 2il1_A RAB12; G-protein, GDP, 90.7 0.096 3.3E-06 45.5 2.1 22 245-266 28-49 (192)
474 4bas_A ADP-ribosylation factor 90.7 0.1 3.5E-06 45.1 2.2 23 244-266 18-40 (199)
475 3b1v_A Ferrous iron uptake tra 90.6 0.095 3.3E-06 49.1 2.1 22 245-266 5-26 (272)
476 2hup_A RAS-related protein RAB 90.6 0.095 3.3E-06 46.0 2.0 22 245-266 31-52 (201)
477 3geh_A MNME, tRNA modification 90.6 0.23 7.7E-06 50.3 5.0 21 246-266 227-247 (462)
478 2gco_A H9, RHO-related GTP-bin 90.6 0.093 3.2E-06 45.9 1.9 22 245-266 27-48 (201)
479 2qtf_A Protein HFLX, GTP-bindi 90.6 0.19 6.6E-06 49.1 4.3 22 246-267 182-203 (364)
480 2vp4_A Deoxynucleoside kinase; 90.5 0.12 4.2E-06 46.7 2.7 28 246-274 23-50 (230)
481 1qde_A EIF4A, translation init 90.5 0.12 4.2E-06 45.9 2.6 58 206-266 14-75 (224)
482 2j1l_A RHO-related GTP-binding 90.5 0.085 2.9E-06 46.8 1.6 22 245-266 36-57 (214)
483 2j0v_A RAC-like GTP-binding pr 90.5 0.097 3.3E-06 46.0 1.9 22 245-266 11-32 (212)
484 3gd7_A Fusion complex of cysti 90.5 0.09 3.1E-06 52.1 1.8 23 245-267 49-71 (390)
485 2h57_A ADP-ribosylation factor 90.5 0.059 2E-06 46.6 0.5 23 245-267 23-45 (190)
486 2ck3_A ATP synthase subunit al 90.4 0.19 6.5E-06 51.3 4.2 23 246-268 165-188 (510)
487 2yc2_C IFT27, small RAB-relate 90.4 0.058 2E-06 47.0 0.3 22 245-266 22-43 (208)
488 1oxx_K GLCV, glucose, ABC tran 90.4 0.057 2E-06 52.8 0.3 23 246-268 34-56 (353)
489 1xx6_A Thymidine kinase; NESG, 90.3 0.19 6.6E-06 44.6 3.8 31 245-275 10-43 (191)
490 1sky_E F1-ATPase, F1-ATP synth 90.3 0.12 4.2E-06 52.3 2.7 23 245-267 153-175 (473)
491 4ag6_A VIRB4 ATPase, type IV s 90.3 0.23 7.9E-06 48.6 4.6 35 243-277 35-72 (392)
492 1vt4_I APAF-1 related killer D 90.2 0.58 2E-05 52.1 8.1 56 212-279 131-192 (1221)
493 3q3j_B RHO-related GTP-binding 90.2 0.13 4.3E-06 45.8 2.4 22 245-266 29-50 (214)
494 3tui_C Methionine import ATP-b 90.1 0.11 3.9E-06 50.9 2.2 24 245-268 56-79 (366)
495 4gzl_A RAS-related C3 botulinu 90.1 0.11 3.7E-06 45.7 1.9 23 244-266 31-53 (204)
496 2p67_A LAO/AO transport system 90.0 0.11 3.7E-06 50.3 2.0 24 244-267 57-80 (341)
497 3nh6_A ATP-binding cassette SU 90.0 0.067 2.3E-06 51.2 0.5 26 243-268 80-105 (306)
498 1vec_A ATP-dependent RNA helic 89.9 0.15 5.2E-06 44.6 2.7 52 207-261 4-58 (206)
499 3vr4_D V-type sodium ATPase su 89.9 0.31 1.1E-05 49.2 5.2 24 246-269 154-177 (465)
500 3ch4_B Pmkase, phosphomevalona 89.8 0.18 6.3E-06 45.3 3.2 38 241-278 9-47 (202)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=287.18 Aligned_cols=168 Identities=25% Similarity=0.330 Sum_probs=146.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
-.+..+|+||+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++.+++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
++..++++|..+... .++++||++|||+.+ .++++||+|||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChh
Confidence 356678877643221 467889999999987 57899999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHHH---h----------------hhcCCCHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQML---I----------------MEMNGTPAEAAGEL 373 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---~----------------~~~~~tpa~i~~~l 373 (398)
.|||||+||||||+.+ ++++|+.+.+.+|+ . ....+|+|||...+
T Consensus 299 ~LDpAllRpGRfD~~I--~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKI--EFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp SSCHHHHSTTSSCCEE--ECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hCCHhHcCCCcCceEE--EcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999988 99999999888881 1 11247888887665
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=285.93 Aligned_cols=170 Identities=22% Similarity=0.286 Sum_probs=146.3
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+...+..+|+||+|.+++|++|.+.+..|+.++++|.++|+++++|+|||||||||||++|+|+|++++.+|+.++.+++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ++..++.+|..+... .+++.||++|||+.+ .++++||+|||+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNr 330 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNK 330 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESC
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCC
Confidence 4 345677777543211 567889999999876 578999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHHH---h----------------hhcCCCHHHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQML---I----------------MEMNGTPAEAAGEL 373 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---~----------------~~~~~tpa~i~~~l 373 (398)
|+.|||||+||||||+.+ ++++|+.+.+.+|+ . ....+|+|||...+
T Consensus 331 pd~LDpALlRpGRfD~~I--~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKI--LFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp STTCCTTSSCTTTEEEEE--CCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hhhcCHHHhcCCceeEEE--EcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999988 99999999888881 1 11247888887665
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=284.22 Aligned_cols=168 Identities=25% Similarity=0.315 Sum_probs=145.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
-.+..+|+||+|.+++|++|.+.+..|+.+|+.|.++|+++++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 3556799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
+...++.+|..+... .+++.||++|||+.+ .++++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCch
Confidence 245566776543211 467889999999987 47899999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH---Hhh----------------hcCCCHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM---LIM----------------EMNGTPAEAAGEL 373 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~~----------------~~~~tpa~i~~~l 373 (398)
.|||||+||||||+.+ ++++|+.+.+.+| ... ...+|+|+|...+
T Consensus 332 ~LDpAllRpGRfD~~I--~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKV--EIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp SSCTTTTSTTSEEEEE--CCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred hhCHHHhCCCccceee--ecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999988 9999999988888 111 1247888887665
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=283.53 Aligned_cols=154 Identities=24% Similarity=0.330 Sum_probs=137.2
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+.-.++.+|+||+|.+++|++|.+.+..|+.+|+.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ++..++.+|..+... .+++.||++|||+.+ .++++||+|||+
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNr 329 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNR 329 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSS
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCC
Confidence 4 345567776543211 467789999999987 478999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|+.|||||+||||||+.+ ++++|+.+.+.+|
T Consensus 330 p~~LD~AllRpGRfD~~I--~i~lPd~~~R~~I 360 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKI--EFPLPSEDSRAQI 360 (434)
T ss_dssp CCCCCTTTCSTTSEEEEE--ECCCCCHHHHHHH
T ss_pred chhcCHhHhcCCceeEEE--EeCCcCHHHHHHH
Confidence 999999999999999988 9999999988888
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=282.41 Aligned_cols=188 Identities=22% Similarity=0.281 Sum_probs=155.8
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+.-.+..+|+||+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 33455689999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c------ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 Q------FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~------~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
. ++..++.+|..+... .+++.+|++|||+.+ .++++||+|||+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNr 357 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNR 357 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSC
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCC
Confidence 4 356677777643221 467789999999876 578999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHHH---h----------------hhcCCCHHHHHHHHHc----------
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQML---I----------------MEMNGTPAEAAGELAN---------- 375 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---~----------------~~~~~tpa~i~~~l~~---------- 375 (398)
|+.|||||+||||||+.+ ++++|+.+.|.+|+ . ....+|+|+|...+..
T Consensus 358 pd~LDpALlRpGRFD~~I--~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 358 PNTLDPALLRPGRIDRKV--EFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp TTSBCHHHHSTTTCCEEE--CCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCChhhhccccccEEE--EeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999988 99999999888881 1 1125788888766521
Q ss_pred ----cccHHHHHHHHHHHHH
Q 048683 376 ----SAEAQVSLQGLIKFLH 391 (398)
Q Consensus 376 ----~~d~~~al~~l~~~l~ 391 (398)
.+|...|++.++...+
T Consensus 436 ~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 436 KVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp SSBCHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHhcCcc
Confidence 2466677766665443
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=280.48 Aligned_cols=152 Identities=26% Similarity=0.375 Sum_probs=135.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
-.+..+|+||+|.+++|++|.+.+..|+.+|++|.++|+++++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
++..++.+|..+... +++++||++|||+.+ ..+++||+|||+|+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 346677777543211 578899999999987 46799999999999
Q ss_pred CCChhccCCCchhhHhhhhc-CCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYL-GISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l-~~~~~~~~~~i 357 (398)
.|||||+||||||+.+ ++ ++|+.+.+.+|
T Consensus 323 ~LD~AllRpGRfd~~I--~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKI--EFPSLRDRRERRLI 352 (428)
T ss_dssp SCCHHHHSSSSEEEEE--ECCSSCCHHHHHHH
T ss_pred hcChhhhcCCcceEEE--EcCCCCCHHHHHHH
Confidence 9999999999999977 77 48998888877
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=2e-28 Score=264.09 Aligned_cols=151 Identities=21% Similarity=0.380 Sum_probs=131.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc---
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI--- 279 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~--- 279 (398)
.+..+|++++|.+++|+.|.+.+..++.+++.|.++|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ---cChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 280 ---QFSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 280 ---~~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
.++..++++|..+... +++++||++|||+.+ .++++||+|||+|+.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 628 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchh
Confidence 2577788888654221 568899999999987 468999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||||++||||||+.+ |+++|+.+.+.+|
T Consensus 629 lD~AllRpgRfd~~i--~v~lPd~~~R~~i 656 (806)
T 3cf2_A 629 IDPAILRPGRLDQLI--YIPLPDEKSRVAI 656 (806)
T ss_dssp SCHHHHSTTTSCCEE--EC-----CHHHHT
T ss_pred CCHhHcCCCcceEEE--EECCcCHHHHHHH
Confidence 999999999999988 9999999999888
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=1e-26 Score=250.81 Aligned_cols=150 Identities=25% Similarity=0.352 Sum_probs=135.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ--- 280 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (398)
+..+|+||+|.++++++|.+.+..++.+|+.|..+|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 281 ---FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 281 ---~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
++..++.+|..+... +++++||..|||+.+. .+++||+|||+++.||||
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSCTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcCHH
Confidence 356688888754322 5678899999999773 679999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|+||||||+.+ ++++|+.+.|.+|
T Consensus 357 LrR~GRFd~~I--~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 357 LRRFGRFDREV--DIGIPDATGRLEI 380 (806)
T ss_dssp TTSTTSSCEEE--ECCCCCHHHHHHH
T ss_pred HhCCcccceEE--ecCCCCHHHHHHH
Confidence 99999999977 8999999999988
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=206.12 Aligned_cols=150 Identities=22% Similarity=0.365 Sum_probs=122.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC--
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF-- 281 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (398)
+..+|++|+|.+++|++|.+.+..++.+++.++.+|...++|+||+||||||||++++++|++++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999877642
Q ss_pred ----hHHHHHHHHcCcc---c-----------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 282 ----SSDLQFLLLTMPS---R-----------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 282 ----~~~L~~l~~~~~~---~-----------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
...+..+|..+.. . ..++.++.+|||... ...++++++||+|+.||||
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHh
Confidence 2345555543210 0 334667888998765 4678999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++||||||+.+ ++++|+.+.+.+|
T Consensus 163 l~r~gRfd~~i--~~~~P~~~~r~~i 186 (274)
T 2x8a_A 163 ILRPGRLDKTL--FVGLPPPADRLAI 186 (274)
T ss_dssp HHSTTSSCEEE--ECCSCCHHHHHHH
T ss_pred hcCcccCCeEE--EeCCcCHHHHHHH
Confidence 99999999977 8999999888888
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=1.7e-23 Score=202.70 Aligned_cols=152 Identities=21% Similarity=0.365 Sum_probs=129.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
..++.+|++|+|.+++++.+.+.+..++.+++.|..+|..+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred -----ChHHHHHHHHcCcc-----------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPS-----------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~-----------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
....++.+|..+.. ...++.||..+|++.. ..+++||+|||+++
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPD 165 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGG
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCcc
Confidence 23445555543211 0235778999999865 46799999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.||||++||||||+.+ +++.|+.+.+.+|
T Consensus 166 ~ld~al~r~gRf~~~i--~i~~p~~~~r~~i 194 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLI--YIPLPDEKSRVAI 194 (301)
T ss_dssp GSCGGGGSTTSSCEEE--ECCCCCHHHHHHH
T ss_pred ccChHHhcCCccceEE--ecCCcCHHHHHHH
Confidence 9999999999999976 8999998888887
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.87 E-value=1.1e-21 Score=184.84 Aligned_cols=151 Identities=30% Similarity=0.452 Sum_probs=120.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
...+.+|++|+|.+++++.+.+.+. ++.+++.|..+|...++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 5567899999999999999988765 57788889999999999999999999999999999999999999999988763
Q ss_pred -----ChHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
....+..+|..+... ..++.+|..+|++.. ..+++||+|||+++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 234455555432110 234567888888764 46789999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.||++++||||||+.+ ++++|+.+.+.+|
T Consensus 162 ~l~~~l~r~~rf~~~i--~i~~P~~~~r~~i 190 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQV--VVGLPDVRGREQI 190 (257)
T ss_dssp TSCGGGGSTTSSCEEE--ECCCCCHHHHHHH
T ss_pred hCCHHHcCCCcCCeEE--EeCCCCHHHHHHH
Confidence 9999999999999966 7889988888777
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=191.40 Aligned_cols=165 Identities=23% Similarity=0.257 Sum_probs=131.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-CCcEEEeeccccc-
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDLTDIQ- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~s~~~- 280 (398)
.++.+|++|+|.+++|+.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 45679999999999999999999999999999874 35667999999999999999999999999 8999999988763
Q ss_pred -----ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 281 -----FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
+...++.+|..+... ..++.||..+|++... ..+++||+|||+++.||
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLD 163 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCC
Confidence 344566665432110 3456788999998642 46799999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHHH---hhhc--CCCHHHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQML---IMEM--NGTPAEAAGEL 373 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~il---~~~~--~~tpa~i~~~l 373 (398)
||++| |||+.+ ++++|+.+.+.+|+ .... .+++.++..+.
T Consensus 164 ~al~r--Rf~~~i--~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la 208 (322)
T 1xwi_A 164 SAIRR--RFEKRI--YIPLPEPHARAAMFKLHLGTTQNSLTEADFRELG 208 (322)
T ss_dssp HHHHH--TCCEEE--ECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHH
T ss_pred HHHHh--hcCeEE--EeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999 999977 89999999888882 2222 34555555443
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=183.86 Aligned_cols=148 Identities=27% Similarity=0.419 Sum_probs=115.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC---
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF--- 281 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~--- 281 (398)
+.+|++++|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999988776 578888999999999999999999999999999999999999999999887632
Q ss_pred ---hHHHHHHHHcCcc------------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 282 ---SSDLQFLLLTMPS------------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 282 ---~~~L~~l~~~~~~------------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
...+..+|..+.. ...+..+++.+|+... ..+++||+|||+++.|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADIL 158 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhc
Confidence 2334444433211 0234567777887654 4678999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|++++||||||+.+ +++.|+.+.+.+|
T Consensus 159 d~~l~~~~R~~~~i--~i~~p~~~~r~~i 185 (262)
T 2qz4_A 159 DGALMRPGRLDRHV--FIDLPTLQERREI 185 (262)
T ss_dssp GSGGGSTTSCCEEE--ECCSCCHHHHHHH
T ss_pred CHHHhcCCcCCeEE--EeCCcCHHHHHHH
Confidence 99999999999966 7888887776666
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.86 E-value=9.2e-22 Score=201.83 Aligned_cols=150 Identities=31% Similarity=0.464 Sum_probs=126.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC-
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF- 281 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (398)
....+|++|+|.++.++++.+.+. ++.+++.|.++|...++|+||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 345689999999999999988775 677889999999999999999999999999999999999999999999887642
Q ss_pred -----hHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 282 -----SSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 282 -----~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
...++.+|..+... .+++.||.+||++.+ ..+++||+|||+++.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDI 166 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhh
Confidence 34455555432110 356788999998865 467999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||||++||||||+.+ +++.|+.+.+.+|
T Consensus 167 Ld~allR~gRFd~~i--~i~~Pd~~~R~~I 194 (476)
T 2ce7_A 167 LDPALLRPGRFDKKI--VVDPPDMLGRKKI 194 (476)
T ss_dssp SCGGGGSTTSSCEEE--ECCCCCHHHHHHH
T ss_pred hchhhcccCcceeEe--ecCCCCHHHHHHH
Confidence 999999999999976 8899998877777
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=4.2e-21 Score=183.10 Aligned_cols=154 Identities=25% Similarity=0.304 Sum_probs=126.0
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+...++.+|++|+|.+++++.|.+.+..++.+++.+..+|...++++||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 33456678999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cC------hHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCC
Q 048683 280 QF------SSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNH 324 (398)
Q Consensus 280 ~~------~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~ 324 (398)
.. ...+..+|..+... ..+..+++.+|++.. ..+++||+|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~ 165 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNR 165 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSC
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCC
Confidence 32 22333333321110 234556777777654 467999999999
Q ss_pred CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 ~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++.||++++|+|||++.+ +++.|+.+.+.+|
T Consensus 166 ~~~l~~~l~~~~Rf~~~i--~~~~p~~~~r~~i 196 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRII--EVPAPDEKGRLEI 196 (285)
T ss_dssp GGGBCHHHHSTTSEEEEE--ECCCCCHHHHHHH
T ss_pred chhcCHHHcCCCcCCeEE--EECCCCHHHHHHH
Confidence 999999999999999866 7888888777776
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=3.1e-21 Score=188.42 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=125.7
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 201 VLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
...++.+|++|+|.+++|+.|.+.+..++.+++.+.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3567789999999999999999999999999998877 455678999999999999999999999999999999987763
Q ss_pred ------ChHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 281 ------FSSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 281 ------~~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
....++.+|..+... ...+.|+..+|++... ..+++||+|||+++.|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhC
Confidence 233455555432111 3357788899988543 4679999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||++| |||..+ ++++|+.+.+.+|
T Consensus 168 d~al~~--Rf~~~i--~~~~p~~~~r~~i 192 (322)
T 3eie_A 168 DSAIRR--RFERRI--YIPLPDLAARTTM 192 (322)
T ss_dssp CHHHHH--HCCEEE--ECCCCCHHHHHHH
T ss_pred CHHHHc--ccCeEE--EeCCCCHHHHHHH
Confidence 999999 999977 8999999999988
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=8.2e-21 Score=188.22 Aligned_cols=166 Identities=21% Similarity=0.248 Sum_probs=129.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
..++.+|++|+|.+++++.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 456779999999999999999999999999999887 566788999999999999999999999999999999987752
Q ss_pred -----ChHHHHHHHHcCcc---c-----------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 281 -----FSSDLQFLLLTMPS---R-----------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~---~-----------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
....++.+|..+.. . ...+.||..||++... ..+++||+|||+++.||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLD 201 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSC
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCC
Confidence 23445555543211 0 2357788888887542 46799999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHHH---hhhc--CCCHHHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQML---IMEM--NGTPAEAAGEL 373 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~il---~~~~--~~tpa~i~~~l 373 (398)
|+++| |||..+ ++++|+.+.+.+|+ .... .+++.++..+.
T Consensus 202 ~al~r--Rf~~~i--~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la 246 (355)
T 2qp9_X 202 SAIRR--RFERRI--YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG 246 (355)
T ss_dssp HHHHH--TCCEEE--ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred HHHHc--ccCEEE--EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 99999 999977 89999999888882 2222 25555555443
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.83 E-value=2e-20 Score=192.99 Aligned_cols=149 Identities=30% Similarity=0.424 Sum_probs=125.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC--
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF-- 281 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (398)
++.+|++|+|.++.++++.+.+. ++.++..|.++|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999987765 677888999999999999999999999999999999999999999999887642
Q ss_pred ----hHHHHHHHHcCccc-----------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 282 ----SSDLQFLLLTMPSR-----------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 282 ----~~~L~~l~~~~~~~-----------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
...++.+|..+... .+++.||.+|||... ...++++++||+|+.|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~L 182 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDIL 182 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhc
Confidence 24466666554321 234678888888764 4678999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||+++||||||+.+ ++++|+.+.+.+|
T Consensus 183 D~aLlr~gRfdr~i--~i~~Pd~~~R~~I 209 (499)
T 2dhr_A 183 DPALLRPGRFDRQI--AIDAPDVKGREQI 209 (499)
T ss_dssp CTTTSSTTSSCCEE--ECCCCCHHHHHHH
T ss_pred CcccccccccceEE--ecCCCCHHHHHHH
Confidence 99999999999977 8999999888888
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.82 E-value=1.6e-20 Score=193.63 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=128.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC--
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF-- 281 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (398)
.+.+|++|+|.+..++.|.+.+..++.+++.|..+|.+.++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999877632
Q ss_pred ----hHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChh
Q 048683 282 ----SSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPA 331 (398)
Q Consensus 282 ----~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpA 331 (398)
...++.+|..+... ..++.||..||+... ...++||+|||+++.||++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 33455555433211 345668888888765 4679999999999999999
Q ss_pred ccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 332 LLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 332 llRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++|+|||++.+ ++++|+.+.+.+|
T Consensus 357 l~r~gRf~~~i--~i~~P~~~eR~~I 380 (489)
T 3hu3_A 357 LRRFGRFDREV--DIGIPDATGRLEI 380 (489)
T ss_dssp GGSTTSSCEEE--ECCCCCHHHHHHH
T ss_pred HhCCCcCceEE--EeCCCCHHHHHHH
Confidence 99999999977 8999999888888
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.82 E-value=5.8e-21 Score=180.74 Aligned_cols=151 Identities=32% Similarity=0.441 Sum_probs=120.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC-
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF- 281 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (398)
..+.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++++..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 456789999999999999988766 588899999999999999999999999999999999999999999998776531
Q ss_pred -----hHHHHHHHHcCcc------------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 282 -----SSDLQFLLLTMPS------------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 282 -----~~~L~~l~~~~~~------------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
...++.+|..+.. ...++.|++.+|+..+. ...++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPE 162 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCch
Confidence 1111112211100 02466788888887542 35589999999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.||++++|+|||+..+ +++.|+.+.+.++
T Consensus 163 ~ld~~l~r~~Rf~~~i--~i~~p~~~~r~~i 191 (268)
T 2r62_A 163 ILDPALMRPGRFDRQV--LVDKPDFNGRVEI 191 (268)
T ss_dssp TSCGGGGSSSSSCCCC--BCCCCCTTTHHHH
T ss_pred hcCHhHcCCCCCCeEE--EecCcCHHHHHHH
Confidence 9999999999999866 8888888777777
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.82 E-value=3.3e-20 Score=189.17 Aligned_cols=150 Identities=25% Similarity=0.302 Sum_probs=121.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-CCcEEEeeccccc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDLTDIQ 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~s~~~ 280 (398)
..++.+|++|+|.+++++.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999999988874 34567899999999999999999999999 8999999988763
Q ss_pred C------hHHHHHHHHcCcc--------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCCC
Q 048683 281 F------SSDLQFLLLTMPS--------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKL 328 (398)
Q Consensus 281 ~------~~~L~~l~~~~~~--------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~L 328 (398)
+ ...++.+|..+.. ...++.||..+|++... ..+++||+|||+++.|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~l 284 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 284 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGS
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCcccc
Confidence 2 2334555432211 03456788889987542 4679999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||+++| |||+.+ ++++|+.+.+.+|
T Consensus 285 d~al~r--Rf~~~i--~i~~P~~~~r~~i 309 (444)
T 2zan_A 285 DSAIRR--RFEKRI--YIPLPEAHARAAM 309 (444)
T ss_dssp CHHHHT--TCCEEE--ECCCCCHHHHHHH
T ss_pred CHHHHh--hcceEE--EeCCcCHHHHHHH
Confidence 999999 999977 8999999988888
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.81 E-value=1.9e-19 Score=169.17 Aligned_cols=151 Identities=29% Similarity=0.402 Sum_probs=121.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc-
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ- 280 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (398)
..++.+|++++|.++.+.++.+... .+.++..+..++...++|++|+||||||||++++++|+.++.+++.++..++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 3455699999999999999987665 46778889999999999999999999999999999999999999999876542
Q ss_pred -----ChHHHHHHHHcCcc---c--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 281 -----FSSDLQFLLLTMPS---R--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 281 -----~~~~L~~l~~~~~~---~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
....+..+|..... . ..++.++..+||... +..++++++||+|+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 165 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCch
Confidence 12334444543221 0 124567888887654 45678899999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.|||+++|+||||+.+ +++.|+.+.+.+|
T Consensus 166 ~ld~~l~r~~rf~~~i--~i~~p~~~~r~~i 194 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQI--AIDAPDVKGREQI 194 (254)
T ss_dssp GSCGGGGSTTSSCEEE--ECCSCCHHHHHHH
T ss_pred hCCHHHcCCCcCCeEE--eeCCcCHHHHHHH
Confidence 9999999999999977 8999999988888
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=182.16 Aligned_cols=183 Identities=23% Similarity=0.264 Sum_probs=134.1
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 200 VVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+...++.+|++|+|.+.+++.|.+.+..+..+++.|...+. .++++|||||||||||++|+++|++++.+++.++++++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 33678889999999999999999999999999998888774 47899999999999999999999999999999999886
Q ss_pred cC------hHHHHHHHHcCcc--------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 280 QF------SSDLQFLLLTMPS--------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 280 ~~------~~~L~~l~~~~~~--------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
.. ...+..+|..+.. ...+..|+..+||........++||+|||+++.
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 42 3334444432211 133446777888776544567899999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHHH---hh--hcCCCHHHHHHHHHc-cccHHHHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQML---IM--EMNGTPAEAAGELAN-SAEAQVSLQGLI 387 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---~~--~~~~tpa~i~~~l~~-~~d~~~al~~l~ 387 (398)
||++++| ||+..+ +++.|+.+.+.+|+ .. ...+++.++..+... .+....++..|+
T Consensus 265 l~~~l~~--R~~~~i--~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 265 LDEAVLR--RFIKRV--YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CCHHHHT--TCCEEE--ECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCHHHHc--CcceEE--EcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999 999766 88999988888872 22 234666655544322 233344444443
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.80 E-value=4.6e-21 Score=208.64 Aligned_cols=151 Identities=21% Similarity=0.374 Sum_probs=126.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
....+|++++|.+++|+.+.+.+..++.+++.+..++..+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345689999999999999999998888899999999999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHcCcc-----------------------------cccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 281 ----FSSDLQFLLLTMPS-----------------------------RVTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~-----------------------------~~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
....++.+|..+.. ..+++.||++||++.. ..+++||+|||+++.
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 628 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGG
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCccc
Confidence 34556665543211 1456789999999865 468999999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
||||++||||||+.+ |++.|+.+.+.+|
T Consensus 629 ld~allrpgRf~~~i--~~~~p~~~~r~~I 656 (806)
T 1ypw_A 629 IDPAILRPGRLDQLI--YIPLPDEKSRVAI 656 (806)
T ss_dssp GSCTTSSGGGTTSCC--CCCCCCCSHHHHH
T ss_pred CCHHHhCccccCcee--ecCCCCHHHHHHH
Confidence 999999999999977 8999998888888
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=177.96 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=127.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...+.+|++|+|.+++++.|.+.+..++.+++.|...+ ..++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34577899999999999999999999999998887765 55789999999999999999999999999999999988742
Q ss_pred ------hHHHHHHHHcCcc---c-----------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCC
Q 048683 282 ------SSDLQFLLLTMPS---R-----------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLD 329 (398)
Q Consensus 282 ------~~~L~~l~~~~~~---~-----------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LD 329 (398)
...++.+|..+.. . ..++.||..+|+........++||+|||.++.||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 2334444432211 0 2345788889987654456789999999999999
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH---Hhh--hcCCCHHHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM---LIM--EMNGTPAEAAGEL 373 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i---l~~--~~~~tpa~i~~~l 373 (398)
++++| ||+..+ ++++|+.+.+.+| +.. ...+++.++..+.
T Consensus 236 ~~l~~--Rf~~~i--~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la 280 (357)
T 3d8b_A 236 EAARR--RLVKRL--YIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV 280 (357)
T ss_dssp HHHHT--TCCEEE--ECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHH
T ss_pred HHHHh--hCceEE--EeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 99999 999866 8899998888877 222 2345655554443
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.79 E-value=5.4e-20 Score=177.63 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=100.3
Q ss_pred hhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc------ChHHHHHHHHcC-------ccc--------
Q 048683 237 RVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ------FSSDLQFLLLTM-------PSR-------- 295 (398)
Q Consensus 237 ~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~-------~~~-------- 295 (398)
..+.++++|+|||||||||||++|+++|++++.+++.++++++. ....+++.|..+ ...
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677889999999999999999999999999999999988763 234466666444 111
Q ss_pred -----------------ccchhhhhhhcCCcc---------cCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCC
Q 048683 296 -----------------VTLSGLLNFIDGSWS---------WCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGIS 349 (398)
Q Consensus 296 -----------------~~ls~LL~~lDgl~s---------~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~ 349 (398)
...+.|++.||+... ....+++||+|||+++.|||||+||||||+.+ + +|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i--~--~P 185 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY--W--AP 185 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE--E--CC
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE--e--Cc
Confidence 133778888885531 12356899999999999999999999999965 3 57
Q ss_pred ChHHHHHH---HhhhcCCCHHHHHHHHH
Q 048683 350 HHHLYEQM---LIMEMNGTPAEAAGELA 374 (398)
Q Consensus 350 ~~~~~~~i---l~~~~~~tpa~i~~~l~ 374 (398)
+.+.+.+| +.....++..+++....
T Consensus 186 ~~~~r~~Il~~~~~~~~~~~~~l~~~~~ 213 (293)
T 3t15_A 186 TREDRIGVCTGIFRTDNVPAEDVVKIVD 213 (293)
T ss_dssp CHHHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHhC
Confidence 88888888 44455778777776654
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=2.8e-19 Score=171.60 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=130.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...+.+|++++|.+++++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45678999999999999999999999999998887766 45789999999999999999999999999999999887632
Q ss_pred ------hHHHHHHHHcCcc---c-----------------------ccchhhhhhhcCCccc-CCCCeEEEEecCCCCCC
Q 048683 282 ------SSDLQFLLLTMPS---R-----------------------VTLSGLLNFIDGSWSW-CGEGRIILFWTNHKEKL 328 (398)
Q Consensus 282 ------~~~L~~l~~~~~~---~-----------------------~~ls~LL~~lDgl~s~-~~~~vivI~TTN~~~~L 328 (398)
...++.+|..+.. . ...+.||..+|+.... .+..++||+|||+++.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 2233343332111 1 2234577788876542 13568999999999999
Q ss_pred ChhccCCCchhhHhhhhcCCCChHHHHHHH---hhh--cCCCHHHHHHHHHc-cccHHHHHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHHHLYEQML---IME--MNGTPAEAAGELAN-SAEAQVSLQGLI 387 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~~~~~~il---~~~--~~~tpa~i~~~l~~-~~d~~~al~~l~ 387 (398)
|++++| ||+..+ ++++|+.+.+.+|+ ... ..+++..+..+... .+.....++.++
T Consensus 173 ~~~l~~--R~~~~i--~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 173 DEAALR--RFTKRV--YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CHHHHH--HCCEEE--ECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHh--hCCeEE--EeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999 999866 89999988888872 222 24566655544322 233333444443
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.78 E-value=1.3e-18 Score=166.00 Aligned_cols=150 Identities=29% Similarity=0.411 Sum_probs=119.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc--
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ-- 280 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (398)
.++.+|++++|.+++++++.+... .+.++..+..++...++|++|+||||||||++++++|+.++.+++.++..++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 366799999999999999977665 56678889999999999999999999999999999999999999999876542
Q ss_pred ----ChHHHHHHHHcCcc---c--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 281 ----FSSDLQFLLLTMPS---R--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 281 ----~~~~L~~l~~~~~~---~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
....+..+|..... . ..++.++..++|... +..++++++||+|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 12234444433211 0 223457777777643 455788999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|||+++|+||||+.+ +++.|+.+.+.+|
T Consensus 191 ld~~l~r~~rf~~~i--~i~~p~~~~r~~i 218 (278)
T 1iy2_A 191 LDPALLRPGRFDRQI--AIDAPDVKGREQI 218 (278)
T ss_dssp SCHHHHSTTSSCCEE--ECCCCCHHHHHHH
T ss_pred CCHhHcCCCcCCeEE--EeCCcCHHHHHHH
Confidence 999999999999977 8999999888888
No 29
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=4.1e-19 Score=180.15 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=64.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcC-cccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC------
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGR-VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF------ 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~------ 281 (398)
++|+|+++.|+.+...+..+++++..+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999999888777665555544443 35789999999999999999999999999999999876532
Q ss_pred --hHHHHHHHHcC-------------------cccccchhhhhhhcCCcccCCCCeEEEEe-cCCCCCCChhccCCCchh
Q 048683 282 --SSDLQFLLLTM-------------------PSRVTLSGLLNFIDGSWSWCGEGRIILFW-TNHKEKLDPALLRPGRMD 339 (398)
Q Consensus 282 --~~~L~~l~~~~-------------------~~~~~ls~LL~~lDgl~s~~~~~vivI~T-TN~~~~LDpAllRpGR~D 339 (398)
...++.+|..+ ..+++++.||.+|||+.+. .+ + +++ ||+++.|||||+||||||
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~--~~-v-~a~~TN~~~~ld~aL~rggr~D 170 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGE--VE-N-HDSHSSTRQAFRKKLREGQLDD 170 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccc--cc-c-ccccccCHHHHHHHHHcCCCcc
Confidence 34455554332 2237899999999999763 23 2 455 999999999999999999
Q ss_pred hHhhhhcCCCChH
Q 048683 340 QRAFNYLGISHHH 352 (398)
Q Consensus 340 ~l~~~~l~~~~~~ 352 (398)
+.+ ++++|+..
T Consensus 171 ~~i--~i~lP~~~ 181 (444)
T 1g41_A 171 KEI--EIDVSAGV 181 (444)
T ss_dssp -------------
T ss_pred eEE--EEcCCCCc
Confidence 988 89998765
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.73 E-value=5.2e-18 Score=184.67 Aligned_cols=151 Identities=25% Similarity=0.345 Sum_probs=127.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC-
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF- 281 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (398)
..+.+|++|+|.+++++.|.+.+..++.+++.|..++...++++||+||||||||++|+++|++++.+++.+++.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999876632
Q ss_pred -----hHHHHHHHHcCccc--------------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 282 -----SSDLQFLLLTMPSR--------------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 282 -----~~~L~~l~~~~~~~--------------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
...+..+|..+... ...+.|+..+||... ...+++|+|||+++.|||
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcCH
Confidence 33455555432111 345668888888865 367899999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++.|+||||+.+ ++++|+.+.+.+|
T Consensus 356 al~r~gRf~~~i--~i~~p~~~~r~~i 380 (806)
T 1ypw_A 356 ALRRFGRFDREV--DIGIPDATGRLEI 380 (806)
T ss_dssp TTTSTTSSCEEE--CCCCCCHHHHHHH
T ss_pred HHhccccccccc--ccCCCCHHHHHHH
Confidence 999999999966 7888888888777
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.69 E-value=1.4e-17 Score=170.29 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC--CcEEEeecccccC-
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK--FDIYHLDLTDIQF- 281 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~--~~~~~l~~s~~~~- 281 (398)
...|++++|.+++++.+...+..+. .|..+++|+|||||||||||++|+++|++++ .+++.++++++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 3468999999999999887765432 2556678999999999999999999999999 9999999988742
Q ss_pred ----hHHHHHHHHcCc---cc------------------------------ccc---------------hhhhhhhcCCc
Q 048683 282 ----SSDLQFLLLTMP---SR------------------------------VTL---------------SGLLNFIDGSW 309 (398)
Q Consensus 282 ----~~~L~~l~~~~~---~~------------------------------~~l---------------s~LL~~lDgl~ 309 (398)
...+.+.|..+. .. ..+ +.+++.++...
T Consensus 105 ~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 233777776651 00 111 12444443211
Q ss_pred ccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCCh
Q 048683 310 SWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHH 351 (398)
Q Consensus 310 s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~ 351 (398)
...++.++|++|||+++.+|+|+.||||||+.+..+++.|+.
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 122444666689999999999999999999955558888854
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.60 E-value=1.7e-14 Score=140.69 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=123.1
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
..|.. ...|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++
T Consensus 17 ~~~~~----~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 17 ETYET----SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hhhhh----ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 35755 678889999999999999998888755331 134567999999999999999999999999999
Q ss_pred EeecccccChHHHHHHHHcCccc-------------ccchhhhhhhcCCcc--------------cCCCCeEEEEecCCC
Q 048683 273 HLDLTDIQFSSDLQFLLLTMPSR-------------VTLSGLLNFIDGSWS--------------WCGEGRIILFWTNHK 325 (398)
Q Consensus 273 ~l~~s~~~~~~~L~~l~~~~~~~-------------~~ls~LL~~lDgl~s--------------~~~~~vivI~TTN~~ 325 (398)
.+++..+.....+...+...... .....|+..++...- .....+++|++||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~ 164 (338)
T 3pfi_A 85 TTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA 164 (338)
T ss_dssp EEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG
T ss_pred EecchhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc
Confidence 99998887777777777654332 233445555554220 001147899999999
Q ss_pred CCCChhccCCCchhhHhhhhcCCCChHHHHHHH---hh--hcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 326 EKLDPALLRPGRMDQRAFNYLGISHHHLYEQML---IM--EMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 326 ~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il---~~--~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
..++|+|++ |||..+ .++.++.+.+.+++ .. ...+++..+..... ..+++..+...+..
T Consensus 165 ~~l~~~L~~--R~~~~i--~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 165 GMLSNPLRD--RFGMQF--RLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp GGSCHHHHT--TCSEEE--ECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cccCHHHHh--hcCEEe--eCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999 998755 67777776666662 22 23356655544433 23566555444433
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.51 E-value=2.2e-13 Score=131.57 Aligned_cols=168 Identities=18% Similarity=0.129 Sum_probs=116.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...|.+|++++|.+..++.+...+...... ...++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 567889999999999999888777654321 123568999999999999999999999999999999998877
Q ss_pred hHHHHHHHHc-Cccc-------------ccchhhhhhhcCCc-----cc---------CCCCeEEEEecCCCCCCChhcc
Q 048683 282 SSDLQFLLLT-MPSR-------------VTLSGLLNFIDGSW-----SW---------CGEGRIILFWTNHKEKLDPALL 333 (398)
Q Consensus 282 ~~~L~~l~~~-~~~~-------------~~ls~LL~~lDgl~-----s~---------~~~~vivI~TTN~~~~LDpAll 333 (398)
..++...+.. .... .....|+..++... .. ....+++|+|||.++.++++|.
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~ 156 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL 156 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT
T ss_pred hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH
Confidence 7788777765 2222 12233444444321 00 0124789999999999999999
Q ss_pred CCCchhhHhhhhcCCCChHHHHHHH---h--hhcCCCHHHHHHHHHc-cccHHH
Q 048683 334 RPGRMDQRAFNYLGISHHHLYEQML---I--MEMNGTPAEAAGELAN-SAEAQV 381 (398)
Q Consensus 334 RpGR~D~l~~~~l~~~~~~~~~~il---~--~~~~~tpa~i~~~l~~-~~d~~~ 381 (398)
+ ||+..+ .++.++.+...+++ . ....++++.+..+... .+++..
T Consensus 157 ~--R~~~~i--~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 206 (324)
T 1hqc_A 157 S--RFGIVE--HLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRV 206 (324)
T ss_dssp T--TCSCEE--ECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHH
T ss_pred h--cccEEE--ecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHH
Confidence 8 997544 56666655555551 1 1345777666554432 345543
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.50 E-value=4.4e-14 Score=137.04 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=117.2
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
...|.. .+.|.+|++++|.++.++.+.+.+. ....++.+|++||||||||++++++|++++.++
T Consensus 13 ~~~~~~----k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 13 EHILEQ----KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp CSSHHH----HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred cchHHH----hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 456865 7899999999999999888876665 123456789999999999999999999999999
Q ss_pred EEeecccccChHHHHHHHHcCcc-------c--------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh
Q 048683 272 YHLDLTDIQFSSDLQFLLLTMPS-------R--------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP 330 (398)
Q Consensus 272 ~~l~~s~~~~~~~L~~l~~~~~~-------~--------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp 330 (398)
+.+++++.. ...++..+..... . ...+.|+..++.. ...+.+|+|||.++.+++
T Consensus 77 ~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~----~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 77 MFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY----SSNCSIIITANNIDGIIK 151 (324)
T ss_dssp EEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH----GGGCEEEEEESSGGGSCT
T ss_pred EEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC----CCCcEEEEEeCCccccCH
Confidence 999988764 4455544332111 1 1122344444432 235788999999999999
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHH------------HhhhcCCCH-HHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQM------------LIMEMNGTP-AEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~i------------l~~~~~~tp-a~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+|.+ |+.. + .++.|+.+.+.+| ..++..+++ ..+..... ..+|.+.++..|..+.
T Consensus 152 ~l~s--R~~~-i--~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 152 PLQS--RCRV-I--TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp THHH--HSEE-E--ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred HHHh--hCcE-E--EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 9999 8864 3 5666664432222 123455666 44443332 3478888777776654
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.43 E-value=2.9e-13 Score=130.06 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=108.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCccc---ccceeeCCCCCCchHHHHHHHHhcC-------CcEEEeecccc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWK---RGYLLFGPPGTGKSNLIASMANHLK-------FDIYHLDLTDI 279 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~---rgiLL~GPPGTGKT~la~aiA~~l~-------~~~~~l~~s~~ 279 (398)
+|+|.+++|+.|.+.+..+.. +..+.+.|...+ .++||+||||||||++|+++|+.++ .+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999988876654 666777775543 4599999999999999999999983 48999998876
Q ss_pred cC------hHHHHHHHHcCccc---------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC-----C
Q 048683 280 QF------SSDLQFLLLTMPSR---------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE-----K 327 (398)
Q Consensus 280 ~~------~~~L~~l~~~~~~~---------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~-----~ 327 (398)
.. ...+..+|...... ..++.|++.++.. ..+++||+|||..+ .
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~ 186 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQ 186 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHh
Confidence 42 33445555433221 2224455555542 34678899998654 3
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH---Hhh--hcCCCHHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM---LIM--EMNGTPAEAAGE 372 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~~--~~~~tpa~i~~~ 372 (398)
+||+|++ ||+..+ .++.++.+.+.+| ... ...+++..+...
T Consensus 187 ~~~~l~~--R~~~~i--~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l 232 (309)
T 3syl_A 187 SNPGFRS--RIAHHI--EFPDYSDEELFEIAGHMLDDQNYQMTPEAETAL 232 (309)
T ss_dssp HSTTHHH--HEEEEE--EECCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred hCHHHHH--hCCeEE--EcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6899999 998866 7888888777777 222 345676655433
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=1.4e-12 Score=117.39 Aligned_cols=167 Identities=11% Similarity=0.094 Sum_probs=109.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeec
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDL 276 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~ 276 (398)
...|.+|++++|.++.++.+.+.+.. . ...++||+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 67889999999999888887766541 1 12359999999999999999999986 456888887
Q ss_pred ccccChHHHHHHHHcC--------ccc-------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCC
Q 048683 277 TDIQFSSDLQFLLLTM--------PSR-------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRP 335 (398)
Q Consensus 277 s~~~~~~~L~~l~~~~--------~~~-------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRp 335 (398)
+.......+...+... ... .....|+..++.. ..++.+|+|||.++.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~- 151 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS- 151 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT-
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH-
Confidence 7665544444333221 111 1122344444432 3567889999999999999998
Q ss_pred CchhhHhhhhcCCCChHHHHHH---H--hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 336 GRMDQRAFNYLGISHHHLYEQM---L--IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 336 GR~D~l~~~~l~~~~~~~~~~i---l--~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|++. + .++.++.+...++ . .....+++..+..+.. ..+++..+++.+..+.
T Consensus 152 -r~~~-i--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 152 -RCAV-F--RFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp -TSEE-E--ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hCce-e--ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7774 2 3454444444444 1 1244577776665543 3468877666655543
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.43 E-value=6.7e-13 Score=126.95 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=98.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhh-cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC------
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRV-GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF------ 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~------ 281 (398)
++++|.++.++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999988887654332221111 1134678999999999999999999999999999999887642
Q ss_pred --hHHHHHHHHcCcc-------c-------------c------------cchhhhhhhcCCccc------CCCCeEEEEe
Q 048683 282 --SSDLQFLLLTMPS-------R-------------V------------TLSGLLNFIDGSWSW------CGEGRIILFW 321 (398)
Q Consensus 282 --~~~L~~l~~~~~~-------~-------------~------------~ls~LL~~lDgl~s~------~~~~vivI~T 321 (398)
...+..++..... . . ..+.|+..+|+.... ....+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2335555543311 0 1 134566666653110 1235778888
Q ss_pred ----cCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 322 ----TNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 322 ----TN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
++.+..++|+|++ ||+..+ .++.++.+...+|
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i--~~~~~~~~~~~~i 210 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRV--ELTALSAADFERI 210 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEE--ECCCCCHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceE--EcCCcCHHHHHHH
Confidence 5688899999998 999644 6777776666665
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.41 E-value=5.6e-13 Score=126.25 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=95.4
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc---C----
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ---F---- 281 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~---~---- 281 (398)
+.+++.....+.+........ ......+...++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 446666666566655422221 122333456678999999999999999999999999999999876421 1
Q ss_pred hHHHHHHHHcCc---cc----------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCCh-hccCC
Q 048683 282 SSDLQFLLLTMP---SR----------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDP-ALLRP 335 (398)
Q Consensus 282 ~~~L~~l~~~~~---~~----------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDp-AllRp 335 (398)
...+..+|..+. .. ..+..|+..+++... .+..++||+|||.++.+|+ ++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc-
Confidence 133445554321 11 112223344444332 2456789999999999998 4544
Q ss_pred CchhhHhhhhcCCCChHHHHHH---HhhhcCCCHHHHHHHH
Q 048683 336 GRMDQRAFNYLGISHHHLYEQM---LIMEMNGTPAEAAGEL 373 (398)
Q Consensus 336 GR~D~l~~~~l~~~~~~~~~~i---l~~~~~~tpa~i~~~l 373 (398)
||+..+ .+|+...+.+| +.....++++++....
T Consensus 188 -rf~~~i----~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~ 223 (272)
T 1d2n_A 188 -AFSTTI----HVPNIATGEQLLEALELLGNFKDKERTTIA 223 (272)
T ss_dssp -TSSEEE----ECCCEEEHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred -ccceEE----cCCCccHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 988743 44543333444 4445567887766554
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.3e-12 Score=135.30 Aligned_cols=188 Identities=14% Similarity=0.177 Sum_probs=116.1
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcC-hhHHhhhcC---cccccceeeCCCCCCchHHHHHHHHhc
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNG-KEYYRRVGR---VWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~-~~~~~~~g~---~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
...|.. .+.|.+|++++|.++.++.+.+.+..+... +..++..|. +.++++||+||||||||++|+++|+++
T Consensus 26 ~~lW~e----kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 26 DKLWTV----KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCCHHH----HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCccc----ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346865 789999999999999999998888754322 223333333 256789999999999999999999999
Q ss_pred CCcEEEeecccccChHHHHHHHHcCcc------------------cccchhhhhhhcCCcccCC------------CCeE
Q 048683 268 KFDIYHLDLTDIQFSSDLQFLLLTMPS------------------RVTLSGLLNFIDGSWSWCG------------EGRI 317 (398)
Q Consensus 268 ~~~~~~l~~s~~~~~~~L~~l~~~~~~------------------~~~ls~LL~~lDgl~s~~~------------~~vi 317 (398)
+++++.+++++......+...+..... ....--+++++|.+..... .++.
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~ 181 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 181 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSC
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCC
Confidence 999999999987665444433322110 0000113445554432111 1223
Q ss_pred EEEecCC--CCCCChhccCCCchhhHhhhhcCCCChHHHHHH-----HhhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 318 ILFWTNH--KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM-----LIMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 318 vI~TTN~--~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-----l~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
||++||. ...++ .+.| |+. .+ .++.|+.+...++ ..++..++++.+..+.. ..+|.+.++..+..+
T Consensus 182 iIli~~~~~~~~l~-~l~~--r~~-~i--~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFDR--VCL-DI--QFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EEEEESCTTSSTTG-GGTT--TSE-EE--ECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEEEEcCCCCccch-hhHh--ceE-EE--EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4444443 33443 3444 322 22 4666666555554 22345688777665553 357888887776544
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.38 E-value=6.4e-13 Score=127.45 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=108.3
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----C
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----K 268 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~ 268 (398)
+|.. .+.|.+|++++|.++.++.+.+.+. . + . ..++|||||||||||++|+++|+.+ +
T Consensus 6 ~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 68 (319)
T 2chq_A 6 IWVE----KYRPRTLDEVVGQDEVIQRLKGYVE----R-------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWR 68 (319)
T ss_dssp CTTT----TTSCSSGGGSCSCHHHHHHHHTTTT----T-------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHH
T ss_pred cHHH----hcCCCCHHHHhCCHHHHHHHHHHHh----C-------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCccc
Confidence 5655 7899999999999988887765543 1 1 1 1249999999999999999999986 4
Q ss_pred CcEEEeecccccChHHHH----HHHHcC----c-cc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCC
Q 048683 269 FDIYHLDLTDIQFSSDLQ----FLLLTM----P-SR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEK 327 (398)
Q Consensus 269 ~~~~~l~~s~~~~~~~L~----~l~~~~----~-~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~ 327 (398)
.+++.+++++......++ ...... . .+ ...+.|+..++.. +..+++|++||.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~----~~~~~~i~~~~~~~~ 144 (319)
T 2chq_A 69 DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY----SKSCRFILSCNYVSR 144 (319)
T ss_dssp HHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS----SSSEEEEEEESCGGG
T ss_pred CCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc----CCCCeEEEEeCChhh
Confidence 568888877653322222 222111 1 11 1123344555442 356789999999999
Q ss_pred CChhccCCCchhhHhhhhcCCCChHHHHHH---H--hhhcCCCHHHHHHHHHc-cccHHHHHHHHHHH
Q 048683 328 LDPALLRPGRMDQRAFNYLGISHHHLYEQM---L--IMEMNGTPAEAAGELAN-SAEAQVSLQGLIKF 389 (398)
Q Consensus 328 LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l--~~~~~~tpa~i~~~l~~-~~d~~~al~~l~~~ 389 (398)
+++++.+ |+..+ .+..++.+...++ . ..+..++++.+..+... .+|+..++..+...
T Consensus 145 l~~~l~s--r~~~i---~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 145 IIEPIQS--RCAVF---RFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp SCHHHHT--TCEEE---ECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cchHHHh--hCeEE---EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999998 76642 3444443333333 1 12346777776655533 46777776665443
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.35 E-value=7.8e-12 Score=122.93 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=52.4
Q ss_pred cCCCC-ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC--cEEEeeccc
Q 048683 203 QHAMT-FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF--DIYHLDLTD 278 (398)
Q Consensus 203 ~~p~~-f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--~~~~l~~s~ 278 (398)
..|.. |++++|.+..++.+......... |..+++++||+||||||||++|+++|+.++. +++.+++..
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 45555 99999999998887554443322 3444689999999999999999999999985 777777554
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.34 E-value=3.3e-12 Score=130.17 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=107.8
Q ss_pred ccCCCCccccccChHHH---HHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 202 LQHAMTFKDLALDSELK---KMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k---~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
...|.+|++++|.+.+. +.+...+.. |. ..++||+||||||||++|+++|+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 67899999999999888 555555431 11 257999999999999999999999999999998765
Q ss_pred ccChHHHHHHHHcCcccc----cchhhhhhhcCCcccC---------CCCeEEEEec--CCCCCCChhccCCCchhhHhh
Q 048683 279 IQFSSDLQFLLLTMPSRV----TLSGLLNFIDGSWSWC---------GEGRIILFWT--NHKEKLDPALLRPGRMDQRAF 343 (398)
Q Consensus 279 ~~~~~~L~~l~~~~~~~~----~ls~LL~~lDgl~s~~---------~~~vivI~TT--N~~~~LDpAllRpGR~D~l~~ 343 (398)
. ...+++.++..+.... ..--+++++|.+.... ...+++|++| |....++++|++ |+..+.
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s--R~~v~~- 161 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS--RARVYL- 161 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT--TEEEEE-
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC--ceeEEe-
Confidence 4 3455665554432110 0001233333322111 0235666655 555789999999 877533
Q ss_pred hhcCCCChHHHHHH----Hh--------hhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHHH
Q 048683 344 NYLGISHHHLYEQM----LI--------MEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLHV 392 (398)
Q Consensus 344 ~~l~~~~~~~~~~i----l~--------~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~~ 392 (398)
+..++.+...++ +. ....+++..+..+.. ..+|++.++..+..++..
T Consensus 162 --l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 162 --LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADM 221 (447)
T ss_dssp --CCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred --eCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 454454444444 21 123477766555443 457888887777666543
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.33 E-value=3.7e-12 Score=132.89 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=92.8
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChH----
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSS---- 283 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~---- 283 (398)
.++++|.+++++.+.+.+....-... . ....+||+||||||||++++++|..++.++..+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 46799999999988765543221111 1 345699999999999999999999999999999887653221
Q ss_pred -----------HHHHHHHcCccc------------------ccchhhhhhhcCCccc-----------CCCCeEEEEecC
Q 048683 284 -----------DLQFLLLTMPSR------------------VTLSGLLNFIDGSWSW-----------CGEGRIILFWTN 323 (398)
Q Consensus 284 -----------~L~~l~~~~~~~------------------~~ls~LL~~lDgl~s~-----------~~~~vivI~TTN 323 (398)
.+.+.|..+... ...+.||..||..... .-..++||+|||
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 223334333211 1346677777653211 014579999999
Q ss_pred CCCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 324 HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 324 ~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.++.|||+|++ ||+. + .++.|+.+.+.+|
T Consensus 233 ~~~~l~~aL~~--R~~v-i--~~~~~~~~e~~~I 261 (543)
T 3m6a_A 233 NLATIPGPLRD--RMEI-I--NIAGYTEIEKLEI 261 (543)
T ss_dssp STTTSCHHHHH--HEEE-E--ECCCCCHHHHHHH
T ss_pred ccccCCHHHHh--hcce-e--eeCCCCHHHHHHH
Confidence 99999999999 9975 4 6777777666666
No 44
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.8e-12 Score=126.39 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=108.6
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---- 268 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---- 268 (398)
.+|.. .+.|.+|++++|.+++++.+...+. . | . ..++||+||||||||++|+++|+.++
T Consensus 25 ~~~~~----k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 87 (353)
T 1sxj_D 25 QPWVE----KYRPKNLDEVTAQDHAVTVLKKTLK----S-------A-N-LPHMLFYGPPGTGKTSTILALTKELYGPDL 87 (353)
T ss_dssp -CHHH----HTCCSSTTTCCSCCTTHHHHHHHTT----C-------T-T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHH----hcCCCCHHHhhCCHHHHHHHHHHHh----c-------C-C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46866 7899999999999998887765542 1 1 1 13499999999999999999999864
Q ss_pred --CcEEEeecccccChHHHHHHHHc---C---------------ccc-------------ccchhhhhhhcCCcccCCCC
Q 048683 269 --FDIYHLDLTDIQFSSDLQFLLLT---M---------------PSR-------------VTLSGLLNFIDGSWSWCGEG 315 (398)
Q Consensus 269 --~~~~~l~~s~~~~~~~L~~l~~~---~---------------~~~-------------~~ls~LL~~lDgl~s~~~~~ 315 (398)
..++.+++++......+++.+.. . ... ...+.|+..++.. ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~----~~~ 163 (353)
T 1sxj_D 88 MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY----SGV 163 (353)
T ss_dssp HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT----TTT
T ss_pred cccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc----CCC
Confidence 45888888775443333332211 1 000 1122344444432 234
Q ss_pred eEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH--Hh--hhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 316 RIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM--LI--MEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 316 vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i--l~--~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
..+|++||+++.++|++.+ |+..+. +-+++..+....+ .. .+..+++..+..+.. ..+|+..++..+..+.
T Consensus 164 ~~~il~~~~~~~l~~~l~s--R~~~i~--~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLAS--QCSKFR--FKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS 239 (353)
T ss_dssp EEEEEEESCGGGSCHHHHH--HSEEEE--CCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH
T ss_pred ceEEEEeCchhhCcchhhc--cCceEE--eCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5677899999999999998 776422 2233444444333 11 344577776655543 3578888777665543
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=2.1e-11 Score=110.79 Aligned_cols=168 Identities=19% Similarity=0.192 Sum_probs=107.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.+.|.+|++++|.+...+.+...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 67888999999999988888766642 1 12357999999999999999999998754
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCccc-------------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPSR-------------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~~-------------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++.........+..++...... .....|+..++.. ...+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~----~~~~~~ 159 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----PEHVKF 159 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC----CTTEEE
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC----CCceEE
Confidence 33444443322334566666543211 1223344444432 356889
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
|+|||.++.+++++.+ |+.. + .++.++.+...++ + .....++++.+..+.. ..+++..+...+..++
T Consensus 160 i~~t~~~~~~~~~l~~--r~~~-i--~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 160 LLATTDPQKLPVTILS--RCLQ-F--HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp EEEESCGGGSCHHHHT--TSEE-E--ECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHHH--Hhhh-c--cCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999998 6533 1 3454554444444 1 1234677777665543 3567777666555544
No 46
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.32 E-value=7.2e-13 Score=130.96 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=54.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhh-hcC-cccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccccc
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRR-VGR-VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQ 280 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~-~g~-~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (398)
.|+|.+..++.+...+............ .+. ..++++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 3699999999998888644432211000 111 2467899999999999999999999999999999988764
No 47
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=6.8e-12 Score=120.45 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=113.9
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----- 267 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----- 267 (398)
.+|.. .+.|.+|++++|.++.++.+...+. . + ..+. +||+||||||||++|+++|+.+
T Consensus 9 ~~~~~----~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 9 LPWVE----KYRPQVLSDIVGNKETIDRLQQIAK----D-------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCHHH----HTCCSSGGGCCSCTHHHHHHHHHHH----S-------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH
T ss_pred CcHHH----hcCCCCHHHHHCCHHHHHHHHHHHH----c-------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 46755 6889999999999999888876653 1 1 2233 9999999999999999999986
Q ss_pred CCcEEEeecccccChHHHHHHHHcCc--------c-c-------------ccchhhhhhhcCCcccCCCCeEEEEecCCC
Q 048683 268 KFDIYHLDLTDIQFSSDLQFLLLTMP--------S-R-------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK 325 (398)
Q Consensus 268 ~~~~~~l~~s~~~~~~~L~~l~~~~~--------~-~-------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~ 325 (398)
+.+++.+++++..+...+++++.... . . ...+.|+..++.. ....++|++||.+
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~----~~~~~~il~~~~~ 147 (323)
T 1sxj_B 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY----SNSTRFAFACNQS 147 (323)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT----TTTEEEEEEESCG
T ss_pred cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc----CCCceEEEEeCCh
Confidence 45688888776544555554443211 1 1 1122344444332 3567888999999
Q ss_pred CCCChhccCCCchhhHhhhhcCCCChHHHHHHH-----hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHHH
Q 048683 326 EKLDPALLRPGRMDQRAFNYLGISHHHLYEQML-----IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 326 ~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il-----~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
+.+++++.+ |+..+ .++.++.+...+++ ..+..++++.+..... ..+++..+++.+....
T Consensus 148 ~~l~~~l~s--r~~~i---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 148 NKIIEPLQS--QCAIL---RYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp GGSCHHHHT--TSEEE---ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhchhHHHh--hceEE---eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999998 66532 34555554444441 2345677776655543 3678888887776554
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=7.3e-12 Score=122.52 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=106.2
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---- 268 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---- 268 (398)
.+|.. .+.|.+|++++|.+++++.+...+. . | ..+. +||+||||||||++++++|+.+.
T Consensus 13 ~~~~~----k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 13 LPWVE----KYRPETLDEVYGQNEVITTVRKFVD----E-------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCHHH----HTCCSSGGGCCSCHHHHHHHHHHHH----T-------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CchHH----HhCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 46765 7899999999999888777765553 1 2 1223 99999999999999999999863
Q ss_pred -CcEEEeecccccChHHHHHHHHcCc---------cc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 269 -FDIYHLDLTDIQFSSDLQFLLLTMP---------SR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 269 -~~~~~l~~s~~~~~~~L~~l~~~~~---------~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
..+..++.++......+++.+.... .+ ...+.|+..++.. .....+|++||.++
T Consensus 76 ~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~----~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY----TKNTRFCVLANYAH 151 (340)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGG
T ss_pred cceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC----CCCeEEEEEecCcc
Confidence 3477777766544444444332111 01 1112244444432 24567888999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHH--Hh--hhcCCCHHHHHHHHH-ccccHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQM--LI--MEMNGTPAEAAGELA-NSAEAQVSLQGL 386 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i--l~--~~~~~tpa~i~~~l~-~~~d~~~al~~l 386 (398)
.++|++.+ |+..+ .+-+++..++...+ .. +...+++..+..... ..++.+.++..+
T Consensus 152 ~i~~~i~s--R~~~~--~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 152 KLTPALLS--QCTRF--RFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp GSCHHHHT--TSEEE--ECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ccchhHHh--hceeE--eccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998 76642 24455555555444 22 345677655443332 345666665544
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=3.1e-12 Score=123.05 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=106.5
Q ss_pred cceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----
Q 048683 193 NCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---- 268 (398)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---- 268 (398)
.+|.. .+.|.+|++++|.++.++.+...+.. | . ..++||+||||||||++|+++|+.+.
T Consensus 13 ~~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 13 KPWVE----KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G-S-MPHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp SCHHH----HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T-C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred Cchhh----ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 46765 78999999999999998888766541 1 1 12499999999999999999999863
Q ss_pred -CcEEEeecccccChHHHHHHHH----cC----c-cc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC
Q 048683 269 -FDIYHLDLTDIQFSSDLQFLLL----TM----P-SR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE 326 (398)
Q Consensus 269 -~~~~~l~~s~~~~~~~L~~l~~----~~----~-~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~ 326 (398)
.+++.+++++......++..+. .. . .. ...+.|+..++.. ...+.+|+|||.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~----~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 76 RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF----SSNVRFILSCNYSS 151 (327)
T ss_dssp HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGG
T ss_pred cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc----CCCCeEEEEeCCcc
Confidence 3578888765432222222221 11 1 11 1223344445432 34678889999999
Q ss_pred CCChhccCCCchhhHhhhhcCCCChHHHHHHH-----hhhcCCCHHHHHHHHH-ccccHHHHHHHHHH
Q 048683 327 KLDPALLRPGRMDQRAFNYLGISHHHLYEQML-----IMEMNGTPAEAAGELA-NSAEAQVSLQGLIK 388 (398)
Q Consensus 327 ~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il-----~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~ 388 (398)
.+++++.+ |+..+ .++.++.+...+++ ..+..++++.+..... ..+++..++..+..
T Consensus 152 ~l~~~l~s--r~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 152 KIIEPIQS--RCAIF---RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp GSCHHHHH--TEEEE---ECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCHHHHh--hCcEE---EecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999997 66642 23333333333331 1234467766554443 35677776665543
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.28 E-value=2.3e-11 Score=119.32 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=106.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC------------
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF------------ 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~------------ 269 (398)
.+.|.+|++++|.++..+.+...+.. | ..++.+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 67899999999999998888776641 1 23457999999999999999999998864
Q ss_pred ------------cEEEeecccccChHHHHHHHHcCcc-------c------------ccchhhhhhhcCCcccCCCCeEE
Q 048683 270 ------------DIYHLDLTDIQFSSDLQFLLLTMPS-------R------------VTLSGLLNFIDGSWSWCGEGRII 318 (398)
Q Consensus 270 ------------~~~~l~~s~~~~~~~L~~l~~~~~~-------~------------~~ls~LL~~lDgl~s~~~~~viv 318 (398)
+++.++...-.....++.++..... + ...+.|+..++.. +..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~----~~~~~~ 152 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----PEHVKF 152 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC----CSSEEE
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC----CCceEE
Confidence 3455554432223345555443221 1 2233455555543 356889
Q ss_pred EEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHH----H-hhhcCCCHHHHHHHHH-ccccHHHHHHHHHHH
Q 048683 319 LFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM----L-IMEMNGTPAEAAGELA-NSAEAQVSLQGLIKF 389 (398)
Q Consensus 319 I~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l-~~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~ 389 (398)
|++||.++.+++++.+ |+..+ .++.++.+...++ + ..+..++++.+..+.. ..+++..+.+.+.+.
T Consensus 153 Il~~~~~~~l~~~l~s--r~~~i---~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 153 LLATTDPQKLPVTILS--RCLQF---HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 224 (373)
T ss_dssp EEEESCGGGSCHHHHT--TSEEE---ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred EEEeCChHhCcHHHHh--heeEe---eCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999997 65332 3444444444444 1 1234567766554442 356777766655444
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.28 E-value=2.1e-11 Score=124.87 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=97.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45678899999999888887766541 235679999999999999999999996 7889
Q ss_pred EEeeccccc---ChHHHHHHHHcCccc-----------ccchhhhhhhcCCcccCCCCeEEEEecCCCC-----CCChhc
Q 048683 272 YHLDLTDIQ---FSSDLQFLLLTMPSR-----------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE-----KLDPAL 332 (398)
Q Consensus 272 ~~l~~s~~~---~~~~L~~l~~~~~~~-----------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~-----~LDpAl 332 (398)
+.++++.-. ....+..+|...... ...+.|+..|+ ...+.+|++||..+ .+||+|
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 988876211 123445555432211 01111222221 24688999999988 799999
Q ss_pred cCCCchhhHhhhhcCCCChHHHHHHHh---------hhcCCCHHHHHHHH
Q 048683 333 LRPGRMDQRAFNYLGISHHHLYEQMLI---------MEMNGTPAEAAGEL 373 (398)
Q Consensus 333 lRpGR~D~l~~~~l~~~~~~~~~~il~---------~~~~~tpa~i~~~l 373 (398)
.| ||+. + .++.|+.+...+|+. .+..+++..+....
T Consensus 314 ~~--Rf~~-i--~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~ 358 (468)
T 3pxg_A 314 ER--RFQP-I--QVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (468)
T ss_dssp HH--SEEE-E--ECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred HH--hCcc-c--eeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99 9986 4 688888777777722 23456666655444
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.23 E-value=4.6e-11 Score=129.17 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=99.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...+..+++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 4567789999999999888876654 1335679999999999999999999997 8888
Q ss_pred EEeecccc---cChHHHHHHHHcCcccccchhhhhhhcCCcc--------cCCCCeEEEEecCCCC-----CCChhccCC
Q 048683 272 YHLDLTDI---QFSSDLQFLLLTMPSRVTLSGLLNFIDGSWS--------WCGEGRIILFWTNHKE-----KLDPALLRP 335 (398)
Q Consensus 272 ~~l~~s~~---~~~~~L~~l~~~~~~~~~ls~LL~~lDgl~s--------~~~~~vivI~TTN~~~-----~LDpAllRp 335 (398)
+.+++..- .....+..+|..+... ...+-++|+-.. -...++.+|+|||..+ .+||||.|
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~---~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r- 315 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQA---GNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER- 315 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTC---CCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH-
T ss_pred EEecccccccchHHHHHHHHHHHHHhc---CCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh-
Confidence 88887211 0223455555433211 011112221100 0124688999999988 79999999
Q ss_pred CchhhHhhhhcCCCChHHHHHHHh---------hhcCCCHHHHHHHH
Q 048683 336 GRMDQRAFNYLGISHHHLYEQMLI---------MEMNGTPAEAAGEL 373 (398)
Q Consensus 336 GR~D~l~~~~l~~~~~~~~~~il~---------~~~~~tpa~i~~~l 373 (398)
||+. + .++.|+.+.+.+|+. ....+++..+....
T Consensus 316 -Rf~~-i--~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~ 358 (758)
T 3pxi_A 316 -RFQP-I--QVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (758)
T ss_dssp -SEEE-E--ECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred -hCcE-E--EeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9965 4 688888887777722 23456766655443
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.23 E-value=1.3e-11 Score=118.36 Aligned_cols=141 Identities=19% Similarity=0.276 Sum_probs=90.3
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHH
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDL 285 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L 285 (398)
++++|.+..++.+...+......-. ....+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4578999999988888765432110 001123469999999999999999999998 567999998876543322
Q ss_pred HHHH-------------------HcCccc------------ccchhhhhhhcCCcccC-------CCCeEEEEecCC---
Q 048683 286 QFLL-------------------LTMPSR------------VTLSGLLNFIDGSWSWC-------GEGRIILFWTNH--- 324 (398)
Q Consensus 286 ~~l~-------------------~~~~~~------------~~ls~LL~~lDgl~s~~-------~~~vivI~TTN~--- 324 (398)
..++ ...... ...+.|+..|+...-.. -.++++|+|||.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 2222 211111 33445666665422110 136789999998
Q ss_pred -----------------------CCCCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 325 -----------------------KEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 325 -----------------------~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
...++|+|+. |||..+ .+..++.+...+|
T Consensus 173 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~--~~~p~~~~~~~~i 224 (311)
T 4fcw_A 173 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIV--VFRPLTKEQIRQI 224 (311)
T ss_dssp HHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEE--ECCCCCHHHHHHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEE--EeCCCCHHHHHHH
Confidence 5578999997 998855 4455555555555
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=6.7e-12 Score=110.27 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 45678899999998887777665431 235679999999999999999999996 7888
Q ss_pred EEeecccccC--------hHHHHHHHHcCccc-ccchhhhhhhcCCccc-----------------CCCCeEEEEecCCC
Q 048683 272 YHLDLTDIQF--------SSDLQFLLLTMPSR-VTLSGLLNFIDGSWSW-----------------CGEGRIILFWTNHK 325 (398)
Q Consensus 272 ~~l~~s~~~~--------~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s~-----------------~~~~vivI~TTN~~ 325 (398)
+.+++..+.. ...+..++...... ...--+++++|.+... ...++.+|+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 8888765421 12233443321110 0000122333322100 02457788999887
Q ss_pred C-----CCChhccCCCchhhHhhhhcCCCChHHHHH
Q 048683 326 E-----KLDPALLRPGRMDQRAFNYLGISHHHLYEQ 356 (398)
Q Consensus 326 ~-----~LDpAllRpGR~D~l~~~~l~~~~~~~~~~ 356 (398)
+ .+|+++++ ||+. + ++..|+.+.+.+
T Consensus 162 ~~~~~~~~~~~l~~--r~~~-i--~~~~p~~~~~~~ 192 (195)
T 1jbk_A 162 EYRQYIEKDAALER--RFQK-V--FVAEPSVEDTIA 192 (195)
T ss_dssp HHHHHTTTCHHHHT--TEEE-E--ECCCCCHHHHHT
T ss_pred HHHHHHhcCHHHHH--Hhce-e--ecCCCCHHHHHH
Confidence 6 89999999 9984 3 677777665544
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.21 E-value=3.4e-10 Score=110.72 Aligned_cols=175 Identities=16% Similarity=0.127 Sum_probs=108.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQF 281 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (398)
...|.+|++++|.+.+++.+...+..-.. .| ..+..++|+||||||||++++++|++++.++...+.+.+..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 57788999999998777776555542211 11 23457999999999999999999999999888777666555
Q ss_pred hHHHHHHHHcCccc-------------ccchhhhhhhcCCc------cc--------CCCCeEEEEecCCCCCCChhccC
Q 048683 282 SSDLQFLLLTMPSR-------------VTLSGLLNFIDGSW------SW--------CGEGRIILFWTNHKEKLDPALLR 334 (398)
Q Consensus 282 ~~~L~~l~~~~~~~-------------~~ls~LL~~lDgl~------s~--------~~~~vivI~TTN~~~~LDpAllR 334 (398)
..++..++...... .....|+..+.... .. .-..+.++++||++..|++++++
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s 169 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS 169 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH
Confidence 56666555432211 01111222222110 00 00235677899999999999999
Q ss_pred CCchhhHhhhhcCCCChHHHHHHHh-----hhcCCCHHHHHHHHHc-cccHHHHHHHHHH
Q 048683 335 PGRMDQRAFNYLGISHHHLYEQMLI-----MEMNGTPAEAAGELAN-SAEAQVSLQGLIK 388 (398)
Q Consensus 335 pGR~D~l~~~~l~~~~~~~~~~il~-----~~~~~tpa~i~~~l~~-~~d~~~al~~l~~ 388 (398)
||.... .++.++.+...+|+. ....+++..+..+... .++++.++.-+..
T Consensus 170 --R~~l~~--~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~ 225 (334)
T 1in4_A 170 --RFGIIL--ELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKR 225 (334)
T ss_dssp --TCSEEE--ECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred --hcCcee--eCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 886533 577777766666621 1334555554444332 3677766554443
No 56
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=4.2e-11 Score=117.02 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=102.0
Q ss_pred ceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-C----
Q 048683 194 CWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-K---- 268 (398)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-~---- 268 (398)
.|.. .++|.+|++++|.++..+.+...+. .. | ..+. +||+||||||||++++++|+++ +
T Consensus 3 ~w~~----kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 3 LWVD----KYRPKSLNALSHNEELTNFLKSLSD---QP-------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp -CTT----TTCCCSGGGCCSCHHHHHHHHTTTT---CT-------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred cchh----ccCCCCHHHhcCCHHHHHHHHHHHh---hC-------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 4755 8899999999999888776654431 11 1 2234 9999999999999999999964 2
Q ss_pred ------------------------CcEEEeecccccChH--HHHHHHHcCcc----------------c-----------
Q 048683 269 ------------------------FDIYHLDLTDIQFSS--DLQFLLLTMPS----------------R----------- 295 (398)
Q Consensus 269 ------------------------~~~~~l~~s~~~~~~--~L~~l~~~~~~----------------~----------- 295 (398)
.+++.++.++..... .+++.+..... .
T Consensus 67 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146 (354)
T ss_dssp C------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred eEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence 123444443322111 24443322111 0
Q ss_pred --ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHHH-----hhhcCCC-HH
Q 048683 296 --VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQML-----IMEMNGT-PA 367 (398)
Q Consensus 296 --~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il-----~~~~~~t-pa 367 (398)
...+.|+..++.. ..+..+|++||.++.++|++.+ |+..+ .++.++.+...+++ .++..++ ++
T Consensus 147 ~~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (354)
T 1sxj_E 147 TKDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QCLLI---RCPAPSDSEISTILSDVVTNERIQLETKD 217 (354)
T ss_dssp CHHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TSEEE---ECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred CHHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hceEE---ecCCcCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 1123344444433 2457899999999999999998 76432 34445544444441 2344566 76
Q ss_pred HHHHHHH-ccccHHHHHHHHHHHH
Q 048683 368 EAAGELA-NSAEAQVSLQGLIKFL 390 (398)
Q Consensus 368 ~i~~~l~-~~~d~~~al~~l~~~l 390 (398)
.+..... ..+|++.++..+....
T Consensus 218 ~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 218 ILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6655543 3578888877766543
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.18 E-value=2.1e-10 Score=111.65 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=40.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...+.+|++++|.+..++.+.... +. +...++||+||||||||++|+++|+.++
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~---~~----------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA---VD----------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH---HC----------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCchhccChHHHHHHHHHHh---hC----------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 346678999999988776543222 11 1234699999999999999999999986
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.17 E-value=7.9e-11 Score=116.72 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=85.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHh-----------------hhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYR-----------------RVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~-----------------~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
.|+|+++.|+.|...+...+.+..... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999887754433221100 011234567999999999999999999999999999
Q ss_pred EeecccccC--------hHHHHHHHHcCc-------cc------------c--------------cchhhhhhhcCCcc-
Q 048683 273 HLDLTDIQF--------SSDLQFLLLTMP-------SR------------V--------------TLSGLLNFIDGSWS- 310 (398)
Q Consensus 273 ~l~~s~~~~--------~~~L~~l~~~~~-------~~------------~--------------~ls~LL~~lDgl~s- 310 (398)
.++++.+.. ...+..++.... .. . ..+.|+..||+..-
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999877631 122334433211 00 2 55678888886420
Q ss_pred ----------------cCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 311 ----------------WCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 311 ----------------~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
....++++|+||| .+.||+++.| ||+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~~ 224 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTTQ 224 (376)
T ss_dssp ---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCSS
T ss_pred cccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhcc
Confidence 0013467888888 6889999999 8763
No 59
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.17 E-value=5.1e-12 Score=110.99 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=82.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.++..+.+.+.+. . ..++++||+||||||||++++++|+.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILS----R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHh----C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 4567889999999887777665542 1 235679999999999999999999997 7888
Q ss_pred EEeecccccC--------hHHHHHHHHcCccc-ccchhhhhhhcCCccc------------------CCCCeEEEEecCC
Q 048683 272 YHLDLTDIQF--------SSDLQFLLLTMPSR-VTLSGLLNFIDGSWSW------------------CGEGRIILFWTNH 324 (398)
Q Consensus 272 ~~l~~s~~~~--------~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s~------------------~~~~vivI~TTN~ 324 (398)
+.+++..+.. ...+..++...... ...--+++++|.+... ....+++|+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCH
Confidence 8888665421 11233333221111 0000122333322200 0245788999997
Q ss_pred CC-----CCChhccCCCchhhHhhhhcCCC
Q 048683 325 KE-----KLDPALLRPGRMDQRAFNYLGIS 349 (398)
Q Consensus 325 ~~-----~LDpAllRpGR~D~l~~~~l~~~ 349 (398)
++ .+|+++.| ||+. + +++.|
T Consensus 162 ~~~~~~~~~~~~l~~--R~~~-i--~i~~p 186 (187)
T 2p65_A 162 SEYRQFIEKDKALER--RFQQ-I--LVEQP 186 (187)
T ss_dssp HHHHHHTTTCHHHHH--HEEE-E--ECCSC
T ss_pred HHHHHHHhccHHHHH--hcCc-c--cCCCC
Confidence 75 79999999 9986 3 45554
No 60
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.16 E-value=2.6e-11 Score=117.92 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=87.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccCh
Q 048683 203 QHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFS 282 (398)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~ 282 (398)
..|..+++++|.++.++.+...+.. .+++||+||||||||++|+++|+.++.+++.++++.-...
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 3445567899999888777665531 2589999999999999999999999999999887422222
Q ss_pred HHHHHHHH-c-Cc-----------------------ccccchhhhhhhcCC-------cccCCCCeEEEEecCCCC----
Q 048683 283 SDLQFLLL-T-MP-----------------------SRVTLSGLLNFIDGS-------WSWCGEGRIILFWTNHKE---- 326 (398)
Q Consensus 283 ~~L~~l~~-~-~~-----------------------~~~~ls~LL~~lDgl-------~s~~~~~vivI~TTN~~~---- 326 (398)
.++..... . .. .....+.|+..++.. ....+..++||+|+|..+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~ 165 (331)
T 2r44_A 86 SDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGT 165 (331)
T ss_dssp HHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCC
T ss_pred hhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCc
Confidence 22210000 0 00 002223334333321 111234567888888543
Q ss_pred -CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 -KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 -~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.+|++|++ ||+..+ .++.|+.+.+.+|
T Consensus 166 ~~l~~~l~~--Rf~~~i--~i~~p~~~~~~~i 193 (331)
T 2r44_A 166 YPLPEAQVD--RFMMKI--HLTYLDKESELEV 193 (331)
T ss_dssp CCCCHHHHT--TSSEEE--ECCCCCHHHHHHH
T ss_pred ccCCHHHHh--heeEEE--EcCCCCHHHHHHH
Confidence 39999999 998644 6888888877777
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.14 E-value=2.5e-10 Score=110.62 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=91.1
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 202 LQHAMTFKDLA-LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 202 ~~~p~~f~~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
+.+..+|++++ |.... .. ...+......+ + ...++++|+||||||||++++++|+++ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-LA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-HH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-HH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45567899997 43322 22 22333333332 1 235689999999999999999999999 8999999887
Q ss_pred cccChHHHHHHHHcC---------ccc---------------ccchhhhhhhcCCcccCCCCeEEEEecCCCC---CCCh
Q 048683 278 DIQFSSDLQFLLLTM---------PSR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE---KLDP 330 (398)
Q Consensus 278 ~~~~~~~L~~l~~~~---------~~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~---~LDp 330 (398)
++. ..+...+... .+. .....++..++.... ...++|++++|.+. .+++
T Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 75 DFA--QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL--LEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHH--HHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCH
T ss_pred HHH--HHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEecCChHHHHHhhh
Confidence 652 1111111100 000 112223333333322 23456666666665 7899
Q ss_pred hccCCCchhhHhhhhcCCCChHHHHHHH---h--hhcCCCHHHHHHHHHccccHHH
Q 048683 331 ALLRPGRMDQRAFNYLGISHHHLYEQML---I--MEMNGTPAEAAGELANSAEAQV 381 (398)
Q Consensus 331 AllRpGR~D~l~~~~l~~~~~~~~~~il---~--~~~~~tpa~i~~~l~~~~d~~~ 381 (398)
+|.+ ||+.-..-.++. +.+.+.+|+ . ....++++.+..+....++...
T Consensus 151 ~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~g~~r~ 203 (324)
T 1l8q_A 151 RLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKNVRE 203 (324)
T ss_dssp HHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCSSHHH
T ss_pred Hhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCHHH
Confidence 9998 887411114455 666666661 1 2345676555433322255544
No 62
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.13 E-value=4.5e-10 Score=109.80 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=90.7
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCC------------------------cEEEeecc---cccChHHHHHHHHcCcc
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKF------------------------DIYHLDLT---DIQFSSDLQFLLLTMPS 294 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~------------------------~~~~l~~s---~~~~~~~L~~l~~~~~~ 294 (398)
.+.++|||||||||||++|+++|+.+.. +++.++.. .-...+.+++++.....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998753 46666653 22234556666554321
Q ss_pred c-------------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHH
Q 048683 295 R-------------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYE 355 (398)
Q Consensus 295 ~-------------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~ 355 (398)
. ...+.||..++.. +..+++|++||.++.|+|++++ |+..+ .++.++.+...
T Consensus 103 ~~~~~~~kvviIdead~l~~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc~~~---~~~~~~~~~~~ 173 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTDAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RCRLH---YLAPPPEQYAV 173 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TSEEE---ECCCCCHHHHH
T ss_pred ccccCCcEEEEECchhhcCHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cceee---eCCCCCHHHHH
Confidence 1 2235577777653 3568889999999999999998 66542 34555555555
Q ss_pred HHHhhhcCCCHHHHHHHHH-ccccHHHHHHHH
Q 048683 356 QMLIMEMNGTPAEAAGELA-NSAEAQVSLQGL 386 (398)
Q Consensus 356 ~il~~~~~~tpa~i~~~l~-~~~d~~~al~~l 386 (398)
+++.....+++..+...+. ..+++..|+..+
T Consensus 174 ~~L~~~~~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 174 TWLSREVTMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHHHHCCCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5544445677776665553 456777776544
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.12 E-value=1.8e-10 Score=105.41 Aligned_cols=172 Identities=13% Similarity=0.050 Sum_probs=96.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTD 278 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~ 278 (398)
+.++.+|+++++.+.. +.+.+.+..+... +.++++||+||||||||++++++|+++. .+++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAAGN-DELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC--CC-HHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCCCC-HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4445799999973211 2333444444332 1357899999999999999999999875 7788888776
Q ss_pred ccChHHHHHHHHcCccc---------------ccchhhhhhhcCCcccCCCCeEEEEecC-CCC---CCChhccCCCchh
Q 048683 279 IQFSSDLQFLLLTMPSR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTN-HKE---KLDPALLRPGRMD 339 (398)
Q Consensus 279 ~~~~~~L~~l~~~~~~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~---~LDpAllRpGR~D 339 (398)
+... +.+.+...... .....|+..++..... ....+|+||| .++ .+++++.+ |++
T Consensus 91 ~~~~--~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~ 164 (242)
T 3bos_A 91 HASI--STALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMH 164 (242)
T ss_dssp GGGS--CGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHH
T ss_pred HHHH--HHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--Hhh
Confidence 5321 11111111110 0123344444443321 2222555555 443 56788888 775
Q ss_pred --hHhhhhcCCCChHHHHHH---Hh--hhcCCCHHHHHHHHH-ccccHHHHHHHHHHHHH
Q 048683 340 --QRAFNYLGISHHHLYEQM---LI--MEMNGTPAEAAGELA-NSAEAQVSLQGLIKFLH 391 (398)
Q Consensus 340 --~l~~~~l~~~~~~~~~~i---l~--~~~~~tpa~i~~~l~-~~~d~~~al~~l~~~l~ 391 (398)
..+ .++.++.+.+.++ .. ....+++..+..+.. ..++...+.+.+..+..
T Consensus 165 ~~~~i--~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 165 WGLTY--QLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HSEEE--ECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCceE--EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 333 5677777666666 22 234577766654443 24677666655554443
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.11 E-value=3.5e-10 Score=110.94 Aligned_cols=173 Identities=13% Similarity=-0.006 Sum_probs=102.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeec
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDL 276 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~ 276 (398)
...++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3458899999888888766543322 1335689999999999999999999998 888999997
Q ss_pred ccccChH----------------------HH-HHHHHcC--cc-c-------------c--cchhhhhhhcCCcccC-CC
Q 048683 277 TDIQFSS----------------------DL-QFLLLTM--PS-R-------------V--TLSGLLNFIDGSWSWC-GE 314 (398)
Q Consensus 277 s~~~~~~----------------------~L-~~l~~~~--~~-~-------------~--~ls~LL~~lDgl~s~~-~~ 314 (398)
....+.. .+ ..++... .. . . ....|...++...... +.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence 7643221 11 1111111 11 1 0 1111222222221111 34
Q ss_pred CeEEEEecCCC---CCCChhccCCCchhh-HhhhhcCCCChHHHHHH----Hhh---hcCCCHHHHHHHHH-cc---ccH
Q 048683 315 GRIILFWTNHK---EKLDPALLRPGRMDQ-RAFNYLGISHHHLYEQM----LIM---EMNGTPAEAAGELA-NS---AEA 379 (398)
Q Consensus 315 ~vivI~TTN~~---~~LDpAllRpGR~D~-l~~~~l~~~~~~~~~~i----l~~---~~~~tpa~i~~~l~-~~---~d~ 379 (398)
.+++|+|||.+ +.+++++.+ ||.. .+ .++.++.+...+| +.. ...++++.+..... .. +++
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i--~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 242 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKS--SLGEVEL--VFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDA 242 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHT--TTTSEEC--CBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCH
T ss_pred eEEEEEEECCCchHhhhCHHHHh--cCCCeEE--eeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCH
Confidence 67899999988 789999998 8864 33 4565565555555 211 23466655443332 22 788
Q ss_pred HHHHHHHHHHHH
Q 048683 380 QVSLQGLIKFLH 391 (398)
Q Consensus 380 ~~al~~l~~~l~ 391 (398)
..+++-+..+..
T Consensus 243 r~~~~~l~~a~~ 254 (387)
T 2v1u_A 243 RRALDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766655544
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.11 E-value=1.5e-10 Score=124.95 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=92.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCc----ccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccCh--
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV----WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFS-- 282 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~-- 282 (398)
+.++|.++.++.+...+.... .|.. +..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 347788888887777665332 2221 22369999999999999999999999999999998876321
Q ss_pred -----------------HHHHHHHHcCccc------------ccchhhhhhhcCCccc--C-----CCCeEEEEecCCCC
Q 048683 283 -----------------SDLQFLLLTMPSR------------VTLSGLLNFIDGSWSW--C-----GEGRIILFWTNHKE 326 (398)
Q Consensus 283 -----------------~~L~~l~~~~~~~------------~~ls~LL~~lDgl~s~--~-----~~~vivI~TTN~~~ 326 (398)
..+...+...+.. ..++.|+..||.-.-. . -.+++||+|||...
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~ 609 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred HhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence 1233333333222 4556677777732110 0 13578999999754
Q ss_pred -------------------------CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 327 -------------------------KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 327 -------------------------~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
.++|+|+. |||..+ .++.++.+...+|
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i--~~~~l~~~~~~~i 661 (758)
T 1r6b_X 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNII--WFDHLSTDVIHQV 661 (758)
T ss_dssp C-----------------CHHHHHHHSCHHHHT--TCSEEE--ECCCCCHHHHHHH
T ss_pred hhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcce--eeCCCCHHHHHHH
Confidence 67899998 999865 5666666656655
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.11 E-value=1.7e-10 Score=124.69 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=91.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccCh---
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFS--- 282 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~--- 282 (398)
+.++|.++.++.+...+......-. . ...+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5688999999888888865432110 0 01112259999999999999999999998 789999999887531
Q ss_pred --HHHHHHHHcCccc------------ccchhhhhhhcCCccc-------CCCCeEEEEecCCCCC------------CC
Q 048683 283 --SDLQFLLLTMPSR------------VTLSGLLNFIDGSWSW-------CGEGRIILFWTNHKEK------------LD 329 (398)
Q Consensus 283 --~~L~~l~~~~~~~------------~~ls~LL~~lDgl~s~-------~~~~vivI~TTN~~~~------------LD 329 (398)
..+...+...+.. ...+.|+..||.-.-. ...+++||+|||.+.. ++
T Consensus 567 ~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~ 646 (758)
T 3pxi_A 567 SGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFR 646 (758)
T ss_dssp C---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSC
T ss_pred ccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCC
Confidence 2233333322221 4556677777752110 1245799999997654 78
Q ss_pred hhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 330 PALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 330 pAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
|+|+. |||..+ .++.++.+...+|
T Consensus 647 p~l~~--Rl~~~i--~~~~l~~~~~~~i 670 (758)
T 3pxi_A 647 PEFIN--RIDEII--VFHSLEKKHLTEI 670 (758)
T ss_dssp HHHHT--TSSEEE--ECC--CHHHHHHH
T ss_pred HHHHh--hCCeEE--ecCCCCHHHHHHH
Confidence 88887 998855 5666665555555
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=7e-10 Score=109.18 Aligned_cols=168 Identities=11% Similarity=0.108 Sum_probs=103.9
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----------CCcEEEeecc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----------KFDIYHLDLT 277 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----------~~~~~~l~~s 277 (398)
++++|.++..+.+.+.+..+... ..+++++|+||||||||++++++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998888766542 234689999999999999999999988 8999999976
Q ss_pred ccc-ChHHH------------------------HHHHHcCcccccchhhhhhhcCCccc------------CCCCeEEEE
Q 048683 278 DIQ-FSSDL------------------------QFLLLTMPSRVTLSGLLNFIDGSWSW------------CGEGRIILF 320 (398)
Q Consensus 278 ~~~-~~~~L------------------------~~l~~~~~~~~~ls~LL~~lDgl~s~------------~~~~vivI~ 320 (398)
... +...+ ..++........ --+++++|.+... ...++.||+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~ 169 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIM 169 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCCcceEEEE
Confidence 644 22111 111111111100 0012222211100 004678999
Q ss_pred ecCCC---CCCChhccCCCchhhHhhhhcCCCChHHHHHHHh---h----hcCCCHHHHHHHHH-cc---ccHHHHHHHH
Q 048683 321 WTNHK---EKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLI---M----EMNGTPAEAAGELA-NS---AEAQVSLQGL 386 (398)
Q Consensus 321 TTN~~---~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~---~----~~~~tpa~i~~~l~-~~---~d~~~al~~l 386 (398)
|||.+ +.+++++.+ ||...+ .++.++.+...+++. . ...++++.+..... .. +|+..+++-+
T Consensus 170 ~t~~~~~~~~l~~~l~s--r~~~~i--~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l 245 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLS--SLGPSV--IFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLL 245 (384)
T ss_dssp ECSSTTTTTTSCHHHHH--TCCCEE--EECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHh--cCCCeE--EECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99987 789999988 776533 566666655556521 1 23566665544332 22 7787777665
Q ss_pred HHHH
Q 048683 387 IKFL 390 (398)
Q Consensus 387 ~~~l 390 (398)
..+.
T Consensus 246 ~~a~ 249 (384)
T 2qby_B 246 FRAA 249 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4.3e-10 Score=109.51 Aligned_cols=169 Identities=12% Similarity=0.045 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcEEEeecccccCh-
Q 048683 214 DSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDIYHLDLTDIQFS- 282 (398)
Q Consensus 214 ~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~~~l~~s~~~~~- 282 (398)
-++..+.|...+...+. ...+.+++||||||||||++++++++++ ++.++.+++..+.+.
T Consensus 25 Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~ 95 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H
T ss_pred HHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH
Confidence 33444455545544433 2346789999999999999999999998 467888887665332
Q ss_pred ---------------------HHHHHHHHcCc--ccccchhhhhhhcCCcc------------cCCCCeEEEEecCCCCC
Q 048683 283 ---------------------SDLQFLLLTMP--SRVTLSGLLNFIDGSWS------------WCGEGRIILFWTNHKEK 327 (398)
Q Consensus 283 ---------------------~~L~~l~~~~~--~~~~ls~LL~~lDgl~s------------~~~~~vivI~TTN~~~~ 327 (398)
..+.+.|.... .....--+|+++|.+.. .....++||+++|..+.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 23444444331 11111224444444421 11245789999999875
Q ss_pred CC----hhccCCCchhh-HhhhhcCCCChHHHHHH----Hhhhc------------------------------------
Q 048683 328 LD----PALLRPGRMDQ-RAFNYLGISHHHLYEQM----LIMEM------------------------------------ 362 (398)
Q Consensus 328 LD----pAllRpGR~D~-l~~~~l~~~~~~~~~~i----l~~~~------------------------------------ 362 (398)
.+ +++.. ||+. .+ .++..+.+-..+| +....
T Consensus 176 ~~~~L~~~v~S--R~~~~~i--~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEI--KLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINH 251 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEE--ECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECE
T ss_pred chhhcchhhhc--cCCceEE--EeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc
Confidence 44 44444 6652 22 3344444444444 22110
Q ss_pred CCCHHHHHHHHH----ccccHHHHHHHHHHHHHHHHh
Q 048683 363 NGTPAEAAGELA----NSAEAQVSLQGLIKFLHVKLQ 395 (398)
Q Consensus 363 ~~tpa~i~~~l~----~~~d~~~al~~l~~~l~~~~~ 395 (398)
.++|+-|+-+-. .++|++.||+-+-.+++-...
T Consensus 252 ~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 252 KINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKK 288 (318)
T ss_dssp ECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 245655543322 268999999999888876644
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.04 E-value=1.3e-09 Score=110.58 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=96.4
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEee
Q 048683 202 LQHAMTFKDLA-LDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLD 275 (398)
Q Consensus 202 ~~~p~~f~~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~ 275 (398)
+.+..+|++++ |..... ....+..+...+ +. .++++||||||||||++++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45556899987 543322 223333333332 11 5689999999999999999999998 88899998
Q ss_pred cccccChHHHHHHHHcC---------c-cc---------------ccchhhhhhhcCCcccCCCCeEEEEecC-CCCC--
Q 048683 276 LTDIQFSSDLQFLLLTM---------P-SR---------------VTLSGLLNFIDGSWSWCGEGRIILFWTN-HKEK-- 327 (398)
Q Consensus 276 ~s~~~~~~~L~~l~~~~---------~-~~---------------~~ls~LL~~lDgl~s~~~~~vivI~TTN-~~~~-- 327 (398)
+.++. .++...+... . .. .....|+..++.+.. .+..||+||+ .+..
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSCGGGCS
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCCHHHHH
Confidence 77652 2222111110 0 10 111223333333322 2334444554 4554
Q ss_pred -CChhccCCCchh--hHhhhhcCCCChHHHHHHHh-----hhcCCCHHHHHHHHHc--cccHHHHHHHHHHHH
Q 048683 328 -LDPALLRPGRMD--QRAFNYLGISHHHLYEQMLI-----MEMNGTPAEAAGELAN--SAEAQVSLQGLIKFL 390 (398)
Q Consensus 328 -LDpAllRpGR~D--~l~~~~l~~~~~~~~~~il~-----~~~~~tpa~i~~~l~~--~~d~~~al~~l~~~l 390 (398)
++++|++ ||+ ..+ .++.|+.+.+.+|+. ....++++. .+.+.. .++++.+...+....
T Consensus 243 ~l~~~L~s--R~~~g~~i--~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~gn~R~l~~~L~~~~ 310 (440)
T 2z4s_A 243 EFQDRLVS--RFQMGLVA--KLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_dssp SCCHHHHH--HHHSSBCC--BCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hccCCeEE--EeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCHHHHHHHHHHHH
Confidence 8999998 887 334 678888887777722 234455544 444442 456665554444433
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.04 E-value=1.3e-09 Score=117.62 Aligned_cols=171 Identities=17% Similarity=0.131 Sum_probs=106.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+ +..+
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 4567789999999988877766543 1246789999999999999999999987 6778
Q ss_pred EEeecccccC--------hHHHHHHHHcCcccccchhhhhhhcCCcc------------------cCCCCeEEEEecCCC
Q 048683 272 YHLDLTDIQF--------SSDLQFLLLTMPSRVTLSGLLNFIDGSWS------------------WCGEGRIILFWTNHK 325 (398)
Q Consensus 272 ~~l~~s~~~~--------~~~L~~l~~~~~~~~~ls~LL~~lDgl~s------------------~~~~~vivI~TTN~~ 325 (398)
+.+++..+.. ...+..++.........--+++++|.+.. ....++.+|++||.+
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 8887665431 34555665443321001112233332210 012457788888864
Q ss_pred -----CCCChhccCCCchhhHhhhhcCCCChHHHHHH---Hh------hhcCCCHHHHHHHHH-------ccccHHHHHH
Q 048683 326 -----EKLDPALLRPGRMDQRAFNYLGISHHHLYEQM---LI------MEMNGTPAEAAGELA-------NSAEAQVSLQ 384 (398)
Q Consensus 326 -----~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i---l~------~~~~~tpa~i~~~l~-------~~~d~~~al~ 384 (398)
-.+||+|.| ||+. + .++.|+.+.+.+| +. ....+++..+..... ....++.+++
T Consensus 326 ~~~~~~~~d~aL~~--Rf~~-i--~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 326 EFSNIFEKDRALAR--RFQK-I--DITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp HHHCCCCCTTSSGG--GEEE-E--ECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred HHhhhhhcCHHHHh--CceE-E--EcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 368999999 9985 3 6888887776666 11 345677776654432 1224555555
Q ss_pred HHHHHH
Q 048683 385 GLIKFL 390 (398)
Q Consensus 385 ~l~~~l 390 (398)
-+-++.
T Consensus 401 lld~a~ 406 (758)
T 1r6b_X 401 VIDEAG 406 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.02 E-value=5.3e-10 Score=122.43 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=89.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----------CCcE
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----------KFDI 271 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----------~~~~ 271 (398)
...|.+|++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+ +.++
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 3467889999999987777766552 1235689999999999999999999997 8899
Q ss_pred EEeecccccC--------hHHHHHHHHcCccc-ccchhhhhhhcCCccc-----------------CCCCeEEEEecCCC
Q 048683 272 YHLDLTDIQF--------SSDLQFLLLTMPSR-VTLSGLLNFIDGSWSW-----------------CGEGRIILFWTNHK 325 (398)
Q Consensus 272 ~~l~~s~~~~--------~~~L~~l~~~~~~~-~~ls~LL~~lDgl~s~-----------------~~~~vivI~TTN~~ 325 (398)
+.++++.+.. ...+..++...... ...--+++++|.+... ...++.+|++||.+
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~ 309 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLD 309 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHH
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCch
Confidence 9999877632 23355555433221 0001122333322100 01356788999877
Q ss_pred C----CCChhccCCCchhhHhhhhcCCCChHHHHHH
Q 048683 326 E----KLDPALLRPGRMDQRAFNYLGISHHHLYEQM 357 (398)
Q Consensus 326 ~----~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i 357 (398)
+ .+|++|.| ||+. + +++.|+.+...+|
T Consensus 310 ~~~~~~~d~aL~r--Rf~~-i--~l~~p~~~e~~~i 340 (854)
T 1qvr_A 310 EYREIEKDPALER--RFQP-V--YVDEPTVEETISI 340 (854)
T ss_dssp HHHHHTTCTTTCS--CCCC-E--EECCCCHHHHHHH
T ss_pred HHhhhccCHHHHh--CCce-E--EeCCCCHHHHHHH
Confidence 5 58999999 9996 4 6788887766666
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=4.4e-09 Score=103.33 Aligned_cols=175 Identities=11% Similarity=-0.005 Sum_probs=106.1
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecccccCh
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTDIQFS 282 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~~~~~ 282 (398)
.+++++|.++..+.+.+.+.....+. .+..+.++|+||||||||++++++++.+ +.+++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 44889999999999988887655431 1112379999999999999999999998 678899987665432
Q ss_pred HHH-HHHHHcC-------------------------ccc-------------ccchhhhhhhcCCcccCCCCeEEEEecC
Q 048683 283 SDL-QFLLLTM-------------------------PSR-------------VTLSGLLNFIDGSWSWCGEGRIILFWTN 323 (398)
Q Consensus 283 ~~L-~~l~~~~-------------------------~~~-------------~~ls~LL~~lDgl~s~~~~~vivI~TTN 323 (398)
..+ ..++... ... ..+..|+..++........++.||++||
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 222 1111110 000 1111222222222110014678899999
Q ss_pred CC---CCCChhccCCCchhh-HhhhhcCCCChHHHHHH----Hhh---hcCCCHHHHHHHHHc----------cccHHHH
Q 048683 324 HK---EKLDPALLRPGRMDQ-RAFNYLGISHHHLYEQM----LIM---EMNGTPAEAAGELAN----------SAEAQVS 382 (398)
Q Consensus 324 ~~---~~LDpAllRpGR~D~-l~~~~l~~~~~~~~~~i----l~~---~~~~tpa~i~~~l~~----------~~d~~~a 382 (398)
.+ +.+++.+.+ ||.. .+ .++..+.+...++ +.. ...++++.+..+... .+++..+
T Consensus 168 ~~~~~~~l~~~~~~--r~~~~~i--~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 168 NDAVLNNLDPSTRG--IMGKYVI--RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp STHHHHTSCHHHHH--HHTTCEE--ECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred CchHHHHhCHHhhh--cCCCceE--EeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 88 788998887 7764 22 3444444444444 222 235777777665532 4788877
Q ss_pred HHHHHHHHHH
Q 048683 383 LQGLIKFLHV 392 (398)
Q Consensus 383 l~~l~~~l~~ 392 (398)
++-+..+...
T Consensus 244 ~~~l~~a~~~ 253 (389)
T 1fnn_A 244 IDILYRSAYA 253 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.02 E-value=4.1e-10 Score=96.71 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=73.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccccChHHHH
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQFSSDLQ 286 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~L~ 286 (398)
+++|.....+.+.+.+..... ....+||+||||||||++|+++++.. +.+++ ++++.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467888888888877765432 24579999999999999999999987 77999 9998876554455
Q ss_pred HHHHcCccc------------ccchhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 287 FLLLTMPSR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 287 ~l~~~~~~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
..+..+... .....|+..|... ...+.+|+|||.+- .++.+.|+|+.
T Consensus 70 ~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~---~~~~~~~~~~~ 128 (145)
T 3n70_A 70 DFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE----HRPFRLIGIGDTSL---VELAASNHIIA 128 (145)
T ss_dssp HHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS----SCSSCEEEEESSCH---HHHHHHSCCCH
T ss_pred cHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc----CCCEEEEEECCcCH---HHHHHcCCCCH
Confidence 555433222 2234455555332 23567888998742 23444555544
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.99 E-value=1.3e-10 Score=99.65 Aligned_cols=100 Identities=9% Similarity=-0.029 Sum_probs=66.3
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHH
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
+++|.+...+.+.+.+..+.. ...++||+||||||||++|+++++..+ +++.++++.+.. ......+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 467888888888888875543 245799999999999999999999998 999999887632 1134444
Q ss_pred HcCccc------------ccchhhhhhhcCCcccCCCCeEEEEecCCC
Q 048683 290 LTMPSR------------VTLSGLLNFIDGSWSWCGEGRIILFWTNHK 325 (398)
Q Consensus 290 ~~~~~~------------~~ls~LL~~lDgl~s~~~~~vivI~TTN~~ 325 (398)
..+... .....|+..++... ..++.+|+|||.+
T Consensus 72 ~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~---~~~~~iI~~tn~~ 116 (143)
T 3co5_A 72 QKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE---RCRVRVIASCSYA 116 (143)
T ss_dssp HHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT---TTTCEEEEEEEEC
T ss_pred HhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC---CCCEEEEEecCCC
Confidence 433322 22233444444321 2457788999865
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.3e-09 Score=105.44 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=84.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc------CCcEEEeeccc-ccChHHHHHHHHcCccc-------------------cc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL------KFDIYHLDLTD-IQFSSDLQFLLLTMPSR-------------------VT 297 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l------~~~~~~l~~s~-~~~~~~L~~l~~~~~~~-------------------~~ 297 (398)
..||||||||||||++|+++|+.+ ..+++.+++++ -...+.+++++..+... ..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a 98 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA 98 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH
Confidence 479999999999999999999874 45888888764 23445566655433211 23
Q ss_pred chhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhhHhhhhcCCCChHHHHHHHhhhcCCCHHHHHHHHHccc
Q 048683 298 LSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGTPAEAAGELANSA 377 (398)
Q Consensus 298 ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~~~~~tpa~i~~~l~~~~ 377 (398)
.+.||..|+.. ++..++|++||.+++|.|+++. | . ..+-++++.++..-+ .....++++.+ . ...+
T Consensus 99 ~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R--~--~~f~~l~~~~i~~~L-~~~~~i~~~~~-~--~~~g 164 (305)
T 2gno_A 99 ANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R--V--FRVVVNVPKEFRDLV-KEKIGDLWEEL-P--LLER 164 (305)
T ss_dssp HHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T--S--EEEECCCCHHHHHHH-HHHHTTHHHHC-G--GGGT
T ss_pred HHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e--e--EeCCCCCHHHHHHHH-HHHhCCCHHHH-H--HHCC
Confidence 45577777764 3567888888999999999998 6 2 234555666655444 22214555443 1 1356
Q ss_pred cHHHHHHHH
Q 048683 378 EAQVSLQGL 386 (398)
Q Consensus 378 d~~~al~~l 386 (398)
|+..|++.+
T Consensus 165 ~~~~al~~l 173 (305)
T 2gno_A 165 DFKTALEAY 173 (305)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777776554
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.96 E-value=9e-10 Score=103.57 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccccc
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQ 280 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~ 280 (398)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|+++++.++ .+++.++++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 4799999999998888887765433 246799999999999999999999985 689999998874
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.88 E-value=1.4e-08 Score=99.31 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=99.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc------CCcEEEeecc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL------KFDIYHLDLT 277 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l------~~~~~~l~~s 277 (398)
....+++++|.++..+.+.+.+...+. ...++.++|+||||||||++++++++.+ +.+++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 334558899998888877665543222 1235679999999999999999999998 8899998865
Q ss_pred cccC----------------------hHHHH----HHHHcCccc-----------------ccchhhhhhhcCCcccCCC
Q 048683 278 DIQF----------------------SSDLQ----FLLLTMPSR-----------------VTLSGLLNFIDGSWSWCGE 314 (398)
Q Consensus 278 ~~~~----------------------~~~L~----~l~~~~~~~-----------------~~ls~LL~~lDgl~s~~~~ 314 (398)
...+ ...+. +.+...... ..+..|+..++.. ...
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---~~~ 162 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---NKS 162 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---CC-
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---CCC
Confidence 4321 11211 112111101 1222233334433 135
Q ss_pred CeEEEEecCCC---CCCChhccCCCchhh-HhhhhcCCCChHHHHHHHh---h----hcCCCHHHHHHHHH-cc---ccH
Q 048683 315 GRIILFWTNHK---EKLDPALLRPGRMDQ-RAFNYLGISHHHLYEQMLI---M----EMNGTPAEAAGELA-NS---AEA 379 (398)
Q Consensus 315 ~vivI~TTN~~---~~LDpAllRpGR~D~-l~~~~l~~~~~~~~~~il~---~----~~~~tpa~i~~~l~-~~---~d~ 379 (398)
++.+|++||.+ +.+++++.+ ||.. .+ .++..+.+...+++. . ...++++.+..... .. +++
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i--~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKS--SLSEEEI--IFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHH--TTTTEEE--EECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCH
T ss_pred eEEEEEEECCCChHhhhCHHHhc--cCCCeeE--EeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCH
Confidence 67889999977 578888887 6643 23 455555555555521 1 13566655443332 22 777
Q ss_pred HHHHHHHHHHH
Q 048683 380 QVSLQGLIKFL 390 (398)
Q Consensus 380 ~~al~~l~~~l 390 (398)
..+++-+..+.
T Consensus 239 r~~~~ll~~a~ 249 (386)
T 2qby_A 239 RRALDLLRVSG 249 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766544443
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.88 E-value=2.9e-09 Score=116.63 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=51.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
++.++|.+..++.+...+.....+- .. ...+..++||+||||||||++|+++|+.+ +.+++.++++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 3567888888888887776442210 00 01122469999999999999999999999 7899999988764
No 79
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=4.6e-09 Score=92.85 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=52.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
...+.+|++++......+.+.+.+..+..+ +..+.+++++|+||||||||++++++|+.+ |..++.++..
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 346789999988655555565666655543 333446789999999999999999999987 6666666655
Q ss_pred cc
Q 048683 278 DI 279 (398)
Q Consensus 278 ~~ 279 (398)
++
T Consensus 77 ~~ 78 (180)
T 3ec2_A 77 DL 78 (180)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 80
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=3.2e-09 Score=105.70 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=63.6
Q ss_pred hcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCc------------cc--------cc
Q 048683 238 VGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMP------------SR--------VT 297 (398)
Q Consensus 238 ~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~------------~~--------~~ 297 (398)
.+++.++.++|+||||+|||++++++|...+..++.+....-...-.+..++.... .+ ..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~ 243 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 243 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchH
Confidence 46777888999999999999999999999988776644332110011111111100 00 01
Q ss_pred chhhhhhhcCCcccCCCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 298 LSGLLNFIDGSWSWCGEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 298 ls~LL~~lDgl~s~~~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
...+.+.+||. +.|+++|||++.+ ++++||||+|.
T Consensus 244 ~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~ 278 (377)
T 1svm_A 244 LDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTM 278 (377)
T ss_dssp HHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEE
T ss_pred HHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccCh
Confidence 13455666663 3578899999999 89999999998
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.76 E-value=7.3e-10 Score=116.70 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=66.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec----ccccC----h----------HHHHHH-----H-HcC--cccccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL----TDIQF----S----------SDLQFL-----L-LTM--PSRVTL 298 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~----s~~~~----~----------~~L~~l-----~-~~~--~~~~~l 298 (398)
++||+||||||||++|+++|+.++..++.... .++.. . ..+... | ++. ......
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 69999999999999999999999876655321 11110 0 000000 0 000 001334
Q ss_pred hhhhhhhcCC---------cccCCCCeEEEEecCCCC-------------CCChhccCCCchhhHhhhhcCCCChHHHHH
Q 048683 299 SGLLNFIDGS---------WSWCGEGRIILFWTNHKE-------------KLDPALLRPGRMDQRAFNYLGISHHHLYEQ 356 (398)
Q Consensus 299 s~LL~~lDgl---------~s~~~~~vivI~TTN~~~-------------~LDpAllRpGR~D~l~~~~l~~~~~~~~~~ 356 (398)
+.|+..|+.- ....+..+.||+|||.+. .|++||++ |||.+. ...+.|+.+ ..+
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~-~~~~~~~~e-~~~ 484 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIF-ILKDQPGEQ-DRE 484 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCE-EECCTTHHH-HHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEE-EeCCCCCHH-HHH
Confidence 5566666532 112234678999999987 99999999 999733 145566655 444
Q ss_pred H
Q 048683 357 M 357 (398)
Q Consensus 357 i 357 (398)
|
T Consensus 485 i 485 (595)
T 3f9v_A 485 L 485 (595)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.75 E-value=5e-08 Score=100.51 Aligned_cols=127 Identities=19% Similarity=0.125 Sum_probs=72.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC--cEEEeecccccChHHHH-
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF--DIYHLDLTDIQFSSDLQ- 286 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~--~~~~l~~s~~~~~~~L~- 286 (398)
.++|.+++++.+...+. ...++||+||||||||++|+++|+.++. ++..+.+.. .+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46787777766654432 1357999999999999999999999854 444444321 1111111
Q ss_pred ----------HHHHcCcc------------------cccchhhhhhhcC-------CcccCCCCeEEEEecCCCCC---C
Q 048683 287 ----------FLLLTMPS------------------RVTLSGLLNFIDG-------SWSWCGEGRIILFWTNHKEK---L 328 (398)
Q Consensus 287 ----------~l~~~~~~------------------~~~ls~LL~~lDg-------l~s~~~~~vivI~TTN~~~~---L 328 (398)
..+..... ..+.+.|+..|+. .... ....++|+|||.+.. +
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~-~~~~~iI~ATN~lpe~~~~ 165 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEK-IPMRLLVAASNELPEADSS 165 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEE-CCCCEEEEEESSCCCTTCT
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCC-cchhhhhhccccCCCcccc
Confidence 11111100 0334445555542 1111 123467888885432 4
Q ss_pred ChhccCCCchhhHhhhhcCCCCh-HHHHHH
Q 048683 329 DPALLRPGRMDQRAFNYLGISHH-HLYEQM 357 (398)
Q Consensus 329 DpAllRpGR~D~l~~~~l~~~~~-~~~~~i 357 (398)
.+|+++ ||+..+ +++.|+. +.+.+|
T Consensus 166 ~~aLld--RF~~~i--~v~~p~~~ee~~~I 191 (500)
T 3nbx_X 166 LEALYD--RMLIRL--WLDKVQDKANFRSM 191 (500)
T ss_dssp THHHHT--TCCEEE--ECCSCCCHHHHHHH
T ss_pred HHHHHH--HHHHHH--HHHHhhhhhhHHHH
Confidence 469999 996644 6777765 555566
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=2.5e-08 Score=119.32 Aligned_cols=110 Identities=24% Similarity=0.376 Sum_probs=75.3
Q ss_pred cccceeeCCCCCCchHHH-HHHHHhcCCcEEEeecccccChHHHHHHHHcCccc------cc------chhhhhhhcC--
Q 048683 243 KRGYLLFGPPGTGKSNLI-ASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR------VT------LSGLLNFIDG-- 307 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la-~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~------~~------ls~LL~~lDg-- 307 (398)
++++||+||||||||++| +++++..+++++.++++...+...+...+...... .. -..++-++|.
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 578999999999999999 66777678899999998887777777666532110 00 0011222222
Q ss_pred ------------------------CcccCC------CCeEEEEecCCCC-----CCChhccCCCchhhHhhhhcCCCChH
Q 048683 308 ------------------------SWSWCG------EGRIILFWTNHKE-----KLDPALLRPGRMDQRAFNYLGISHHH 352 (398)
Q Consensus 308 ------------------------l~s~~~------~~vivI~TTN~~~-----~LDpAllRpGR~D~l~~~~l~~~~~~ 352 (398)
++.... .++.+|+|||++. .|||+|+| ||.. + +++.|+.+
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf~v-i--~i~~P~~~ 1421 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HAAI-L--YLGYPSGK 1421 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TEEE-E--ECCCCTTT
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--eeeE-E--EeCCCCHH
Confidence 221100 2468999999994 89999999 8833 4 67888777
Q ss_pred HHHHH
Q 048683 353 LYEQM 357 (398)
Q Consensus 353 ~~~~i 357 (398)
....|
T Consensus 1422 ~l~~I 1426 (2695)
T 4akg_A 1422 SLSQI 1426 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 84
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.68 E-value=3e-08 Score=95.67 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=48.7
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 209 KDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 209 ~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
++++|.....+.+.+.+.... ....++||+||||||||++|+++++.. +.+++.++++.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 357888888888877776543 234679999999999999999999975 5789999988764
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.51 E-value=4.9e-08 Score=112.40 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=46.1
Q ss_pred CCccccccChHHHHHHHHHHHHHhcC----------hhHHhh------hcCc----------cccc--ceeeCCCCCCch
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNG----------KEYYRR------VGRV----------WKRG--YLLFGPPGTGKS 257 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~----------~~~~~~------~g~~----------~~rg--iLL~GPPGTGKT 257 (398)
.+|+++.+.++.|+.+.+.+.+++.+ ++.++. .|+. +|+| +|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 58999999999999999999999854 445555 3333 4556 999999999999
Q ss_pred HHHHHHHHhcCC
Q 048683 258 NLIASMANHLKF 269 (398)
Q Consensus 258 ~la~aiA~~l~~ 269 (398)
++|+++|.+...
T Consensus 1097 ~la~~~~~~~~~ 1108 (1706)
T 3cmw_A 1097 TLTLQVIAAAQR 1108 (1706)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999987743
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.40 E-value=2.6e-07 Score=82.80 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=49.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCc-ccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV-WKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~-~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
.+.+|+++.+.+...+.+.+.+..++... ... .+++++|+||||||||++++++|+++ +.+++.++++++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 46789999987655555555555554421 111 13789999999999999999999988 677777776543
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.25 E-value=6.3e-07 Score=94.40 Aligned_cols=53 Identities=30% Similarity=0.295 Sum_probs=43.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 202 LQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
..+|.+|++++|.+.+++.+...+. ....+||+||||||||++|+++|+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 5678899999999888776655443 1257999999999999999999998853
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.22 E-value=1.1e-06 Score=84.89 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=48.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC----CcEEEeeccc
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK----FDIYHLDLTD 278 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~----~~~~~l~~s~ 278 (398)
.+.+|+++.+....+..+.+.+..|+.. .+....++++|+||||||||+|+.++|+++. .+++.+++++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 4578999988664444455555555542 1112357899999999999999999998765 7777776554
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.21 E-value=7.9e-06 Score=80.67 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=48.1
Q ss_pred CccccccChHHHHHHHHHH-HHHhcChhHHhhhcCccccccee--eCCCCCCchHHHHHHHHhc---------CCcEEEe
Q 048683 207 TFKDLALDSELKKMIIKDL-DIFRNGKEYYRRVGRVWKRGYLL--FGPPGTGKSNLIASMANHL---------KFDIYHL 274 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l-~~~l~~~~~~~~~g~~~~rgiLL--~GPPGTGKT~la~aiA~~l---------~~~~~~l 274 (398)
..+.++|-++..+.+.+.+ .....+. ...++.+++ +||||||||++++++++.+ ++.++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 4477899988888887777 5443320 012457899 9999999999999999876 5677778
Q ss_pred eccc
Q 048683 275 DLTD 278 (398)
Q Consensus 275 ~~s~ 278 (398)
++..
T Consensus 93 ~~~~ 96 (412)
T 1w5s_A 93 NAFN 96 (412)
T ss_dssp EGGG
T ss_pred ECCC
Confidence 7643
No 90
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=9.2e-07 Score=80.51 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=29.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
++|.++++|+|||||||||++|.++|+.+.-.++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46667889999999999999999999998765544
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.15 E-value=3.9e-06 Score=100.67 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=85.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc--------------ccchhh-------
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR--------------VTLSGL------- 301 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~--------------~~ls~L------- 301 (398)
..|.+++||||||||++++++|+.+|.+++.+++++-.+...+.++|.++... .+++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i 724 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI 724 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999888888888777654322 222222
Q ss_pred hhhh---------cCCcccCCCCeEEEEecC----CCCCCChhccCCCchhhHhhhhcCCCChHHHHHH-HhhhcCCCHH
Q 048683 302 LNFI---------DGSWSWCGEGRIILFWTN----HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQM-LIMEMNGTPA 367 (398)
Q Consensus 302 L~~l---------Dgl~s~~~~~vivI~TTN----~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i-l~~~~~~tpa 367 (398)
+..+ +|-.-.......|++|.| ....|+++|.+ ||-. + ++..|+.+...+| +.......+.
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~-v--~m~~Pd~~~i~ei~l~s~Gf~~a~ 799 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SFRE-F--SMKSPQSGTIAEMILQIMGFEDSK 799 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEE-E--ECCCCCHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--heEE-E--EeeCCCHHHHHHHHHHhcCCCchH
Confidence 1111 121111134456888999 55689999998 7633 2 6788998888888 4433333444
Q ss_pred HHHH
Q 048683 368 EAAG 371 (398)
Q Consensus 368 ~i~~ 371 (398)
.++.
T Consensus 800 ~la~ 803 (2695)
T 4akg_A 800 SLAS 803 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4543
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.05 E-value=9.7e-07 Score=85.72 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=28.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCc--EEEe
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFD--IYHL 274 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~--~~~l 274 (398)
|.+..+.+||+||||||||+||.++|...+.+ ++.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45555668999999999999999999875544 5555
No 93
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.04 E-value=3.2e-06 Score=79.93 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=25.5
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+++++++||||||||||++|.|+|+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45678999999999999999999998644
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=7.1e-06 Score=70.66 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=32.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDIQ 280 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (398)
...++|+||+|+|||+|++++++.+ |..++.++..++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 4578999999999999999999988 7778888776654
No 95
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.71 E-value=1.4e-05 Score=70.17 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++.++|.||||+|||++++.+|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456899999999999999999999999999875
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.70 E-value=0.00011 Score=89.17 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred cccceeeCCCCCCchHHHHH-HHHhcCCcEEEeecccccChHHHHHHHHcCc-----------------cc---------
Q 048683 243 KRGYLLFGPPGTGKSNLIAS-MANHLKFDIYHLDLTDIQFSSDLQFLLLTMP-----------------SR--------- 295 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~a-iA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-----------------~~--------- 295 (398)
.+.+||+||||||||+++.. +++..+.+++.++++.-.+...+...+.... .+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46799999999999987754 5555577888999988877777777765210 00
Q ss_pred -----------ccchhhhhhhc--CCccc------CCCCeEEEEecCCC-----CCCChhccCCCchhhHhhhhcCCCCh
Q 048683 296 -----------VTLSGLLNFID--GSWSW------CGEGRIILFWTNHK-----EKLDPALLRPGRMDQRAFNYLGISHH 351 (398)
Q Consensus 296 -----------~~ls~LL~~lD--gl~s~------~~~~vivI~TTN~~-----~~LDpAllRpGR~D~l~~~~l~~~~~ 351 (398)
..+.-|...+| |++.. .-.++.+|+|+|.+ ..|+|+|+| ||-.+ +++.|+.
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~vi---~i~~ps~ 1458 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPIL---LVDFPST 1458 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCEE---ECCCCCH
T ss_pred CCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceEE---EeCCCCH
Confidence 01111112222 11110 01346789999987 569999999 88772 5677766
Q ss_pred HHHHHH
Q 048683 352 HLYEQM 357 (398)
Q Consensus 352 ~~~~~i 357 (398)
+....|
T Consensus 1459 esL~~I 1464 (3245)
T 3vkg_A 1459 SSLTQI 1464 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665655
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.9e-05 Score=70.68 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=30.4
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
..+.++|.||||+|||++++++|..+++++++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3456899999999999999999999999998765
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.64 E-value=0.0001 Score=89.48 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=82.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHcCccc--------------ccchhhhhhh----
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLTMPSR--------------VTLSGLLNFI---- 305 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~--------------~~ls~LL~~l---- 305 (398)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+...+.++|.++... .+++.+...|
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~ 684 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQ 684 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999887777777777665432 2223222211
Q ss_pred ------------c-CCcccCCCCeEEEEecC----CCCCCChhccCCCchhhHhhhhcCCCChHHHHHHHhhhcCCC-HH
Q 048683 306 ------------D-GSWSWCGEGRIILFWTN----HKEKLDPALLRPGRMDQRAFNYLGISHHHLYEQMLIMEMNGT-PA 367 (398)
Q Consensus 306 ------------D-gl~s~~~~~vivI~TTN----~~~~LDpAllRpGR~D~l~~~~l~~~~~~~~~~il~~~~~~t-pa 367 (398)
+ |-.-....+.-||+|.| ....|+++|.. ||--+ .+..|+.++..+|++-..++. ..
T Consensus 685 ~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v---~m~~Pd~~~i~ei~L~s~Gf~~a~ 759 (3245)
T 3vkg_A 685 VALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSM---AMIKPDREMIAQVMLYSQGFKTAE 759 (3245)
T ss_dssp HHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEE---ECCSCCHHHHHHHHHHTTTCSCHH
T ss_pred HHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEE---EEeCCCHHHHHHHHHHHcccchHH
Confidence 1 31111124567888998 45689999987 55442 577888888888833333333 34
Q ss_pred HHHH
Q 048683 368 EAAG 371 (398)
Q Consensus 368 ~i~~ 371 (398)
.++.
T Consensus 760 ~La~ 763 (3245)
T 3vkg_A 760 VLAG 763 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 99
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3.1e-05 Score=67.50 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+-++|.||||+|||++++++|+.++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458899999999999999999999998887654
No 100
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.61 E-value=2.2e-05 Score=69.14 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=30.1
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.+.-++|.||||+|||++++.+|..+++++++.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 34556889999999999999999999999887753
No 101
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.52 E-value=3.7e-05 Score=67.10 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.++|.||||+|||++++++|..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 4889999999999999999999999988764
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=4.5e-05 Score=65.71 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=28.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
-++|.||||+||||+++.+|+.+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 37899999999999999999999999887663
No 103
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.51 E-value=4.2e-05 Score=66.99 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=29.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++.++|.||||+|||++++++|..+++++++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 356899999999999999999999999888764
No 104
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=4.6e-05 Score=67.35 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHh-cCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANH-LKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~-l~~~~~~l~ 275 (398)
+..++|.|+||+|||++++.+|+. +|+++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345899999999999999999999 798888865
No 105
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.48 E-value=4.7e-05 Score=66.81 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=28.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-++|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4889999999999999999999999998876
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.45 E-value=5e-05 Score=65.71 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=29.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
..++|.|+||+|||++++.+|+.+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999999875
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=6.5e-05 Score=65.08 Aligned_cols=32 Identities=38% Similarity=0.707 Sum_probs=28.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.||||+||||+++.+|..++.++++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence 45889999999999999999999998877643
No 108
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.43 E-value=0.00012 Score=66.10 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCChhccCCCchhh
Q 048683 313 GEGRIILFWTNHKEKLDPALLRPGRMDQ 340 (398)
Q Consensus 313 ~~~vivI~TTN~~~~LDpAllRpGR~D~ 340 (398)
..+.-||++|+.++.||.++.. |++.
T Consensus 121 ~~~~~iil~tq~~~~l~~~lr~--ri~~ 146 (199)
T 2r2a_A 121 HQGIDIFVLTQGPKLLDQNLRT--LVRK 146 (199)
T ss_dssp TTTCEEEEEESCGGGBCHHHHT--TEEE
T ss_pred cCCeEEEEECCCHHHHhHHHHH--Hhhe
Confidence 3456788999999999999887 8887
No 109
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.39 E-value=7.7e-05 Score=69.67 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=29.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
-+++.||||+|||++++++|..+++++++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999999999998865
No 110
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.38 E-value=6.8e-05 Score=64.85 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=28.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-++|.|+||+|||++++.+|+.+++++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 4889999999999999999999999988765
No 111
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.37 E-value=7.5e-05 Score=64.01 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=26.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-++|.||||+|||++++.+ ..+|++++.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 4789999999999999999 99999988763
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00023 Score=67.81 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
++..+.+.+.+...+... .....+.-++|.||||+||||++++++..++...+.++.
T Consensus 10 ~~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344444445555444321 122234568899999999999999999998544555554
No 113
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=7.9e-05 Score=65.41 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=28.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-++|.|+||+|||++++.+|+.+++++++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 45889999999999999999999999887654
No 114
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=8.9e-05 Score=66.13 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=28.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-++|.||||+|||++++.+|..+++++++++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 34889999999999999999999999988764
No 115
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.32 E-value=0.00069 Score=67.21 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=46.4
Q ss_pred ccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccccc
Q 048683 208 FKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQ 280 (398)
Q Consensus 208 f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~ 280 (398)
++.+++.....+.+.+.+.... +....+|++|++||||+++|+++....+ .+|+.++++.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 3456777666666666665422 1234689999999999999999998865 689999998874
No 116
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.31 E-value=9e-05 Score=64.92 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=29.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++-++|.|+||+|||++++.+|+.+++++++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 346889999999999999999999999888764
No 117
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.30 E-value=0.00055 Score=69.61 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=34.5
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHH-HHhcCCcEE
Q 048683 211 LALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASM-ANHLKFDIY 272 (398)
Q Consensus 211 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~ai-A~~l~~~~~ 272 (398)
|.|.+.+|+.|.-.+. -.++. ....-.+||.|+||| ||++++++ ++.+....+
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f 268 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY 268 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE
Confidence 7888888776654332 11110 111125999999999 99999999 776654443
No 118
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=8.3e-05 Score=65.17 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=27.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-++|.||||+||||+++.+|+.+++++++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 4789999999999999999999998877654
No 119
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.29 E-value=0.0001 Score=63.43 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=27.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.|+||+|||++++.+++.+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 789999999999999999999999988765
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=6.9e-05 Score=65.00 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.5
Q ss_pred ccceeeCCCCCCchHHHHHHHH-hcCCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMAN-HLKFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~-~l~~~~~~l 274 (398)
.-++|.||||+|||++++.+++ .+++.+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH
Confidence 4578999999999999999999 577655543
No 121
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=9.5e-05 Score=67.07 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-++|.||||+|||++++.+|+.+++++++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehh
Confidence 34889999999999999999999999888763
No 122
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.28 E-value=0.0001 Score=64.93 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.||||+|||++++.+|+.+++++++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 45889999999999999999999999988764
No 123
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.28 E-value=0.00011 Score=66.22 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=27.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.||||+|||++++.+|+.+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 688999999999999999999999888763
No 124
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.27 E-value=0.00013 Score=65.05 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.0
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++-++|.||||+||||+++.++..+|+.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999998887754
No 125
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=9.1e-05 Score=64.88 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=26.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC-----CcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK-----FDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~-----~~~~~l 274 (398)
.-++|.||||+||||+++.+|..++ ++++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 3478999999999999999999988 777764
No 126
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.25 E-value=0.00011 Score=67.07 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=29.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-++|.||||+|||++++.+|+.+++++++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 345899999999999999999999999888763
No 127
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.24 E-value=0.00013 Score=66.01 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=28.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
.-++|.||||+||||+++.+|+.+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3588999999999999999999999988776
No 128
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.23 E-value=0.00013 Score=65.77 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=27.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
++|.||||+|||++++.+|+.+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 688999999999999999999999888763
No 129
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=64.77 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=29.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-++|.||||+|||++++.+|..+++++++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 345889999999999999999999998887764
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.23 E-value=0.00026 Score=65.89 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=30.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
+.-++|.||||+|||++++.++..++...+.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4558999999999999999999999866666665443
No 131
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.00016 Score=63.05 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
.-++|.|+||+|||++++.+|+.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999887
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00014 Score=64.03 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=28.8
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.+.-+.|.||||+||||+++++|...+...+.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 34458899999999999999999988777666654
No 133
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.18 E-value=0.00033 Score=71.00 Aligned_cols=69 Identities=25% Similarity=0.210 Sum_probs=39.4
Q ss_pred CcceecccccccCCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---C
Q 048683 192 RNCWDANNVVLQHAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---K 268 (398)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~ 268 (398)
..+|.+ .+.|.+|+++ .+++++.+...+. ++... ...+++.||||||||+++.+++..+ +
T Consensus 11 ~~~~~~----~~~p~~~~~L--n~~Q~~av~~~~~-~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 11 SSGLVP----RGSHMTFDDL--TEGQKNAFNIVMK-AIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp --------------CCSSCC--CHHHHHHHHHHHH-HHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCcc----ccCCCccccC--CHHHHHHHHHHHH-HHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 346755 8889999875 5566665544433 33321 2368999999999999999998876 3
Q ss_pred C-cEEEeecc
Q 048683 269 F-DIYHLDLT 277 (398)
Q Consensus 269 ~-~~~~l~~s 277 (398)
. .++.+..+
T Consensus 74 ~~~il~~a~T 83 (459)
T 3upu_A 74 ETGIILAAPT 83 (459)
T ss_dssp CCCEEEEESS
T ss_pred CceEEEecCc
Confidence 3 45555433
No 134
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.17 E-value=0.00018 Score=65.98 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=28.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
..++|.|+||+|||++++.+|+.++++++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 35899999999999999999999998887763
No 135
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.17 E-value=0.00018 Score=64.04 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+-++|.||||+|||++++.+|+.+++++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 34789999999999999999999999888765
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.0002 Score=62.16 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=27.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.||||+|||++++.++..+|..+++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 34789999999999999999999998777653
No 137
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=0.00013 Score=66.19 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=27.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.-++|.||||+|||++++.+|+.++++++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34588999999999999999999999876654
No 138
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00025 Score=65.68 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=29.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-++|.||||+||||+++.+++.++++.++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 456899999999999999999999998888764
No 139
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.06 E-value=0.00027 Score=64.68 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=27.6
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
.++-++|.||||+||+|.|+.||+.+|++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 35668899999999999999999999977554
No 140
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.05 E-value=0.00034 Score=61.32 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=28.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+.|.|+||+|||++++.+++.+ |++++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6799999999999999999998 999988763
No 141
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.04 E-value=0.00021 Score=64.46 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=27.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
++|.||||+|||++++.+|+.+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999988876
No 142
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.03 E-value=0.00078 Score=64.47 Aligned_cols=56 Identities=27% Similarity=0.240 Sum_probs=42.7
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
.-+.++|-++..+.+.+ +. . +.++++||+|+|||++++.+++..+.+++.+++...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 44667887666655544 32 1 478999999999999999999998877888887654
No 143
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.00036 Score=62.27 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.-+.|.||||+|||+++++++..+|..+++-
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 34578999999999999999999998766653
No 144
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.01 E-value=0.00084 Score=60.00 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=36.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|...+.+++.++...-.+...+.+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHH
Confidence 355555689999999999999999998667778888765522334444433
No 145
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.01 E-value=0.0013 Score=62.80 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
+..-+.++|-++..+.+.+.+.. | +.++++||+|+|||++++.+++..+ .+.+++..
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 33456788888777777665531 1 5789999999999999999999986 55566543
No 146
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.01 E-value=0.00033 Score=67.93 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=30.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
+.+++.||||+|||+++.++|+.++..++++|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999999988643
No 147
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.01 E-value=0.00041 Score=60.55 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=29.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.-+.|.|++|+|||++++.++..+ |++++.++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 347899999999999999999998 999998874
No 148
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.99 E-value=0.0003 Score=64.12 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=26.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
++|.||||+||||+++.+|+.++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999887776
No 149
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.97 E-value=0.00038 Score=62.71 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
++-+.|.||+|+|||++++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34478999999999999999999875
No 150
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.00038 Score=63.15 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.8
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
++|.||||+||+|.|+.||+.+|++.++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 67899999999999999999999876653
No 151
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00033 Score=62.38 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=27.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
-+.+.||||+|||++++.+|+ +|+++++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 367999999999999999999 8998888753
No 152
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.91 E-value=0.00012 Score=72.00 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.+.+.+.+.+...+... ....++|.||||+|||++++++|+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g---------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDN---------YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTC---------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC---------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 455566666655443311 12358999999999999999999999988855
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.90 E-value=0.00047 Score=62.26 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=27.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-+.|.||||+||||+++.++..+|+++++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 478999999999999999999999887764
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.89 E-value=0.00048 Score=63.55 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=26.8
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.-+.|.||||+||||+++++|+.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3558899999999999999999999876554
No 155
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.89 E-value=0.0033 Score=61.87 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=44.8
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhcCCc--EEEeecccccC
Q 048683 210 DLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHLKFD--IYHLDLTDIQF 281 (398)
Q Consensus 210 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~~--~~~l~~s~~~~ 281 (398)
.++|.......+.+.+..... ....+|++|++||||+.+|+++....+.. ++.++|..+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 456766666666555543321 23459999999999999999999887544 99999998753
No 156
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00049 Score=60.78 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=25.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.|.|+||+||||+++.+|+.++.+++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6789999999999999999999987664
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.87 E-value=0.0006 Score=60.41 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc-CCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL-KFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~~ 276 (398)
.-+.|.||||+||||+++.+|+.+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 347899999999999999999999 688887764
No 158
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00043 Score=61.77 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.|.||||+||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 367899999999999999998 899888754
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00045 Score=64.60 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=29.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
...+.|.||||+|||++++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 346899999999999999999999999999865
No 160
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.00031 Score=61.41 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-++|.||||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 161
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00062 Score=59.88 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=26.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+.|.||||+||||+++.+++.+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 5789999999999999999999 999887654
No 162
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.84 E-value=0.00047 Score=61.20 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=28.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.+.||||+|||++++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4779999999999999999999999998865
No 163
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.83 E-value=0.00091 Score=59.38 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCc--EEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFD--IYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~--~~~l 274 (398)
-++|.||||+|||++++.+|+.++.. ++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 47899999999999999999998873 5544
No 164
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00056 Score=63.89 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=28.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHh---cCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~ 276 (398)
.-++|.|+||+|||++++.++.. .|++++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 35889999999999999999998 7888885543
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.0014 Score=59.46 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=34.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh--c-------CCcEEEeecccccChHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH--L-------KFDIYHLDLTDIQFSSDLQFL 288 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~--l-------~~~~~~l~~s~~~~~~~L~~l 288 (398)
|++...-++|+||||+|||+++..+|.. + +...+.++.........+.+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 78 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 78 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHH
Confidence 4455556899999999999999999985 3 456777766553233344433
No 166
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.78 E-value=0.00056 Score=61.27 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=28.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.|.|++|+|||++++.+++.+|+++++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 3679999999999999999999999998865
No 167
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.71 E-value=0.00086 Score=62.05 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=28.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.+.||||+|||++++.+|..+++++++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 35789999999999999999999998887654
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.70 E-value=0.0014 Score=63.24 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=37.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|... +..++.++.........+.+.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45555668999999999999999998875 5567778776543345555544
No 169
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.70 E-value=0.00067 Score=59.96 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=27.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.|+||+|||++++.+|+. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 34789999999999999999999 99988865
No 170
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.61 E-value=0.00096 Score=65.03 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=30.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
+-++|.||+|+|||+++..+|+.++..+++.|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 35889999999999999999999999998877553
No 171
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.60 E-value=0.001 Score=59.76 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=28.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 34789999999999999999999999988864
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0014 Score=58.38 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
+.-+.|.||+|+|||++++++|..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 3457899999999999999999998 55534444
No 173
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.57 E-value=0.0026 Score=61.91 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=36.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|... +..++.++.........+.+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45555558999999999999999998863 5567777766543445555544
No 174
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.56 E-value=0.00045 Score=61.60 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=23.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
.-+.|.|+||+|||++++.+|+.++.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4478999999999999999999876543
No 175
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.55 E-value=0.0011 Score=59.83 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=27.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.|++|+|||++++.+|. +|+++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 3478999999999999999998 899888864
No 176
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.52 E-value=0.00078 Score=63.76 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=26.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc-CCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL-KFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l-~~~~~~l~ 275 (398)
.-++|.||||+|||++++.++..+ ++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 458899999999999999999974 76666443
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.52 E-value=0.0023 Score=57.46 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=33.8
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcCC---------cEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLKF---------DIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~~---------~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-+.|.||+|+|||+|++.+|..... ..+.++.........+..++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4444455889999999999999999985432 355555544323344444443
No 178
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.50 E-value=0.0015 Score=63.03 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=31.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
++-+++.||+|+|||+++..+|+.++..++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4557899999999999999999999988888776544
No 179
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.47 E-value=0.0013 Score=59.35 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=30.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
.+++++.||+|+|||++|.+++...+ .++..+.-.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 46799999999999999999999877 7776665444
No 180
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.47 E-value=0.0013 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=24.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
.-+.|.||||+|||++++.+|..++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 457899999999999999999999987
No 181
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.46 E-value=0.0014 Score=60.01 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.|.|+||+|||++++.+|..+|+++++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 4779999999999999999999999888754
No 182
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.46 E-value=0.0027 Score=67.13 Aligned_cols=59 Identities=24% Similarity=0.441 Sum_probs=36.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
+..|-+-.+++.+++.+...+. .+ .-.|++||||||||+++..+...+ +..+..+..+.
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~~-----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----QK-----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----CS-----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccccCCCCCHHHHHHHHHHhc----CC-----------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3344444578888887765553 11 136899999999997655443332 55565555443
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.44 E-value=0.0019 Score=60.04 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=26.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-+.|.||+|+|||++++.+|+.+|+.+++-
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 477999999999999999999999887763
No 184
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.43 E-value=0.005 Score=59.40 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=75.4
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhc---CC-c--EEEeecccccChHHHHHHHHcC-------ccc-------------
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHL---KF-D--IYHLDLTDIQFSSDLQFLLLTM-------PSR------------- 295 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l---~~-~--~~~l~~s~~~~~~~L~~l~~~~-------~~~------------- 295 (398)
....||||||+|+||++.++++++.+ ++ + .+.++. +.++++++..+ ..+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 35679999999999999999998865 33 2 333331 12333333221 111
Q ss_pred ccchhhhhhhcCCcccCCCCeEEEEecCCCC------CCChhccCCCchhhHhhhhcCCCChHHHHHH----HhhhcCCC
Q 048683 296 VTLSGLLNFIDGSWSWCGEGRIILFWTNHKE------KLDPALLRPGRMDQRAFNYLGISHHHLYEQM----LIMEMNGT 365 (398)
Q Consensus 296 ~~ls~LL~~lDgl~s~~~~~vivI~TTN~~~------~LDpAllRpGR~D~l~~~~l~~~~~~~~~~i----l~~~~~~t 365 (398)
...+.|+..++.. +++.++|++|+.++ ++-+++.. |.-. ..+-+++..++..-+ -..+..++
T Consensus 92 ~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~--~~~~~l~~~~l~~~l~~~~~~~g~~i~ 163 (343)
T 1jr3_D 92 AINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQ--VTCQTPEQAQLPRWVAARAKQLNLELD 163 (343)
T ss_dssp THHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEE--EEECCCCTTHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--CceE--EEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1123355555543 24566666666543 46667765 3332 124455555555444 23345677
Q ss_pred HHHHHHHHHc-cccHHHHHHHHHHH
Q 048683 366 PAEAAGELAN-SAEAQVSLQGLIKF 389 (398)
Q Consensus 366 pa~i~~~l~~-~~d~~~al~~l~~~ 389 (398)
++.+..+... .+|...+...+.+.
T Consensus 164 ~~a~~~l~~~~~gdl~~~~~elekl 188 (343)
T 1jr3_D 164 DAANQVLCYCYEGNLLALAQALERL 188 (343)
T ss_dssp HHHHHHHHHSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHH
Confidence 7766655543 46777777766554
No 185
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.43 E-value=0.0016 Score=58.17 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.7
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...++-++|.||||+|||++++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34455688999999999999999999885
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.42 E-value=0.0012 Score=59.06 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhc-CCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL-KFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l-~~~~~~l~ 275 (398)
-+.+.||||+|||++++.++..+ ++.++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 36799999999999999999988 77776655
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.39 E-value=0.0015 Score=57.56 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
+.|.||+|+|||||++.++..++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 678999999999999999999875443
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.0013 Score=59.00 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=28.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|++...-++|+||||+|||++++.+|..+ +..++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 34445558899999999999999998654 4556655543
No 189
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.35 E-value=0.00067 Score=60.55 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.|+||+|||++++.+|+.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4478999999999999999999864
No 190
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0012 Score=66.10 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=27.5
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
+.-++|.||||+|||++++.++..+++.+++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 345789999999999999999999987665543
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.31 E-value=0.003 Score=62.05 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=30.2
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++..+-++++||||+|||+|+..+|..+ +..++.++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34445558999999999999999988774 55666666544
No 192
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.29 E-value=0.002 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+.|.||||+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 3679999999999999999987654
No 193
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.23 E-value=0.002 Score=62.87 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
+-+++.||+|+|||+++..+|..++..+++.|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3578999999999999999999999888777654
No 194
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.22 E-value=0.0023 Score=61.72 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDI 279 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~ 279 (398)
-+++.||+|+|||+++..+|..++..+++.+.-.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 47789999999999999999999988887765433
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0032 Score=55.07 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=25.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC---CcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK---FDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~ 275 (398)
.-++|.|+||+|||++++.+|..++ .++..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4478999999999999999999874 4454444
No 196
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.21 E-value=0.004 Score=60.83 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=35.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcC---------CcEEEeecccccChHHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLK---------FDIYHLDLTDIQFSSDLQFLLL 290 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~---------~~~~~l~~s~~~~~~~L~~l~~ 290 (398)
|++...-++|+||||+|||+|+..+|.... -.++.++..+......+..++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q 187 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 187 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 455555589999999999999999998872 3556676654422344544443
No 197
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.20 E-value=0.0018 Score=61.26 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=26.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
.-+.|.|+||+|||++++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 347899999999999999999 6898887764
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0027 Score=57.65 Aligned_cols=40 Identities=25% Similarity=0.176 Sum_probs=29.5
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++...-++++||||+|||+++..+|... +..++.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45555568999999999999988776543 56677776543
No 199
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0026 Score=55.72 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=22.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+-+.|.||+|+||||++++++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 200
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.0036 Score=60.03 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=35.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------------C----CcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------------K----FDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------------~----~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++++||||+|||+++..+|... | ..++.++.........+.+.+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 45555558999999999999999988753 2 467777766543345555443
No 201
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.14 E-value=0.0023 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.-+.|.||||+|||++++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3447899999999999999999987
No 202
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.13 E-value=0.0021 Score=57.72 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=27.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
-+.+.||+|||||++++.+|+.+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 47799999999999999999999999997
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.11 E-value=0.0028 Score=74.42 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
++.+++++||||||||||+||.++|.+. |..+..++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 6778889999999999999999998775 3445555544
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.10 E-value=0.0034 Score=61.64 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|++..+-++++||||+|||++|..+|..+ +.+++.++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45556668999999999999999888764 5667777664
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0038 Score=56.70 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=28.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh----cCCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH----LKFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~----l~~~~~~l~~s 277 (398)
|++...-++++|+||+|||++|..+|.. .+.+++.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4555555899999999999998776543 36677776654
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.03 E-value=0.0032 Score=56.46 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=26.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC----CcEEEee
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK----FDIYHLD 275 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~----~~~~~l~ 275 (398)
+.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34578999999999999999999775 5566665
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.03 E-value=0.0024 Score=58.13 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=21.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMA 264 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA 264 (398)
|++...-+.|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44555568999999999999999988
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.96 E-value=0.0036 Score=61.20 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=29.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++..+-++++||||+|||+|+..+|... +..++.++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45555568999999999999999888654 45666666543
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.93 E-value=0.004 Score=55.50 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
|.++|.||+|+|||++++.+.+...-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56899999999999999999887643
No 210
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.0099 Score=52.88 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=27.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
.-+.+.||+|+|||++++.++..+ +.+++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 347799999999999999999875 6666666433
No 211
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0059 Score=58.51 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhc--CcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVG--RVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566667777766665432101222 2334457899999999999999999876
No 212
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.87 E-value=0.0032 Score=58.05 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=26.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+-|.||||+|||+.++.+|+.++++.++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55899999999999999999999888765
No 213
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.87 E-value=0.0074 Score=53.97 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.+.||+|+|||||+++|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999875
No 214
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.84 E-value=0.0043 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=21.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.||+|+||||+++.++....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3477999999999999999999864
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.79 E-value=0.0084 Score=59.75 Aligned_cols=51 Identities=24% Similarity=0.096 Sum_probs=33.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---------CCcEEEeecccccChHHHHHHH
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---------KFDIYHLDLTDIQFSSDLQFLL 289 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~ 289 (398)
|++...-++|+||||+|||+|+..+|-.. +...+.++.........++.+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a 233 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 233 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH
Confidence 34444458899999999999999776433 2347777766543344444433
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.75 E-value=0.005 Score=60.68 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
|++..+-++++||||+|||++|..+|..+ +.+++.++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45555668999999999999998887764 55666666543
No 217
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.71 E-value=0.0044 Score=61.82 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
+-+++.||+|+|||+++..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 357889999999999999999999988877654
No 218
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0046 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
++-+.|.||+|+||||+++.++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999999865
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0082 Score=58.97 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhc--CcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVG--RVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556666666666665432111222 2334458899999999999999999976
No 220
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.64 E-value=0.0036 Score=58.72 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=23.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444558999999999999999888643
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.63 E-value=0.0051 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=21.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999998764
No 222
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.59 E-value=0.0072 Score=63.08 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=26.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
+.+++.||||||||+++.+++..+ +..+..+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 458899999999999999988754 5666655443
No 223
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.58 E-value=0.0041 Score=55.39 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC--CcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK--FDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~--~~~~~l~ 275 (398)
-+.|.||+|+||||+++.++..++ +.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 467999999999999999999987 5555543
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.53 E-value=0.0084 Score=57.55 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 217 LKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+++.+.+.+...+...... .+....++-+++.||+|+|||+++..+|..+ +..+..++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5666666666666533200 1112334558899999999999999999875 445555443
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.52 E-value=0.0098 Score=57.52 Aligned_cols=39 Identities=21% Similarity=0.019 Sum_probs=27.6
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhc-----CCcEEEeecccc
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHL-----KFDIYHLDLTDI 279 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l-----~~~~~~l~~s~~ 279 (398)
++.. -++++||||+|||+|+..++... +..++.++...-
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 4444 36899999999999977655443 566777776543
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.49 E-value=0.0088 Score=60.24 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhcChh-HHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 215 SELKKMIIKDLDIFRNGKE-YYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~-~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+.+.+.+.+.+...+.... ..... ...++-+++.||||+||||++..+|..+ |..+..+++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455666666666655321 11111 1234568899999999999999998766 555555543
No 227
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.49 E-value=0.007 Score=63.72 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=29.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.-++|.|+||+||||++++++..+ |++++.++.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 348899999999999999999999 999999863
No 228
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.49 E-value=0.0053 Score=56.21 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=27.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
-+.+.|++|||||++++.+|..+|+++++-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 477899999999999999999999999874
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.48 E-value=0.013 Score=59.19 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 215 SELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 215 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+.+++.+.+.+...+..+...... ...+.-+++.||||+||||++..+|..+ |..+..+++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345566666666666532111111 1135668999999999999999998765 555555443
No 230
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.48 E-value=0.011 Score=52.31 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeeccc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTD 278 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~ 278 (398)
+|++|++|+|||++|..+|.. +.+.+.+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888777544
No 231
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.45 E-value=0.0093 Score=62.75 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=23.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
..|+.||||||||+++..++..+ +..+..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 47899999999999877665543 3455554443
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.44 E-value=0.0079 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+-+.|.||+|+|||+|+++++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4478999999999999999998865
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.38 E-value=0.0098 Score=60.83 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-++|.||+|+||||+++.||..+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 347899999999999999999876
No 234
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.37 E-value=0.0074 Score=57.95 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=25.2
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.++...-+.|.||+|+|||+|+++|+..+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 355556688999999999999999998873
No 235
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.37 E-value=0.0059 Score=57.61 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=28.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
|++...-++|.||||+|||+|++.+|..+ |.+++.++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 44445558899999999999999988765 4456555543
No 236
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.31 E-value=0.0047 Score=58.74 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=23.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccccc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQ 280 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~ 280 (398)
-+.+.||+|+||||+++.+++.++ ..+..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 367899999999999999999876 334444444443
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.31 E-value=0.0092 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..-+.|.||.|+|||+|+++++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3347899999999999999999987
No 238
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.29 E-value=0.0081 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.0
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..-+.|.||+|+|||+|++.|+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3447899999999999999999977
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.25 E-value=0.018 Score=57.68 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCccccc-ceeeCCCCCCchHHHHHHHHhcC
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRG-YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
..+++++....+.+..+.+. +. .+.+ +++.||+|+||||+.++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l----~~-----------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL----IK-----------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH----HT-----------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHH----HH-----------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34677887776654433322 11 1234 78999999999999999999875
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.21 E-value=0.0027 Score=56.51 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+.+.||+|+||||+++.++..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999998853
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.14 E-value=0.0086 Score=54.80 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC--CcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK--FDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~--~~~~~l 274 (398)
-+.|.||||+||||+++.+++.++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 367899999999999999999986 466544
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.10 E-value=0.01 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.||+|+|||+++++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3477999999999999999999874
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.07 E-value=0.0067 Score=52.67 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.0
Q ss_pred ccceeeCCCCCCchHHHHHHH
Q 048683 244 RGYLLFGPPGTGKSNLIASMA 264 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA 264 (398)
.-+.|.||+|+||||+++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 347899999999999999854
No 244
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.02 E-value=0.024 Score=54.84 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcChh---HHh-hhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 216 ELKKMIIKDLDIFRNGKE---YYR-RVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~---~~~-~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.+.+.+...+.... ... ....+.+.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555555554321 000 0112334457899999999999999999876
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.98 E-value=0.012 Score=55.06 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+++.||+|+||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 347899999999999999999875
No 246
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.97 E-value=0.012 Score=51.91 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=24.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
.+|+||.||+|+|||++|.++... |..++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 578999999999999999999884 555443
No 247
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.96 E-value=0.016 Score=58.28 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcChh-HHhhhcCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 217 LKKMIIKDLDIFRNGKE-YYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~-~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.+.+.+.+...+.... .+. .....++.+++.||||+|||+++..+|..+
T Consensus 73 ~~~~~~~~l~~ll~~~~~~~~-~~~~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 73 IIKIVYEELVKLLGEEAKKLE-LNPKKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp HHHHHHHHHHHHHCCSCCCCC-CCSSSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555555554321 010 011224568899999999999999999876
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.92 E-value=0.012 Score=53.49 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.4
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+...-+.|.||+|+|||||+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4445578999999999999999999875
No 249
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.92 E-value=0.016 Score=62.75 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=22.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc----CCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL----KFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~ 276 (398)
-.++.||||||||+++..++..+ +..+..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~ 408 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 408 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 46899999999999877665543 344544433
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.90 E-value=0.023 Score=58.26 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhcC--cccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 216 ELKKMIIKDLDIFRNGKEYYRRVGR--VWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~~~~~~g~--~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.+.+.+.+.+...+..... .+.. ..++.+++.|+||+||||++..+|..+ |..+..+++
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3455555666655543211 1111 234568899999999999999999765 566655554
No 251
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.86 E-value=0.013 Score=60.48 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
.-++|.|+||+|||++++.+|..+++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 458899999999999999999998543
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.82 E-value=0.016 Score=55.84 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcChhHH---hhhc--CcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 217 LKKMIIKDLDIFRNGKEYY---RRVG--RVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~~~---~~~g--~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
+++.+.+.+...+.....- ..+. ...++-+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555555665555432200 1122 2334558899999999999999988865 455555543
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.81 E-value=0.0091 Score=54.19 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=15.0
Q ss_pred ccceeeCCCCCCchHHHHHHH-Hhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMA-NHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA-~~l 267 (398)
.-+.|.||+|+|||++++.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 347799999999999999999 765
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.80 E-value=0.012 Score=57.99 Aligned_cols=29 Identities=38% Similarity=0.466 Sum_probs=23.6
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhcC
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.....-+++.||+|+||||++++++..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33344588999999999999999998753
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.79 E-value=0.012 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.810 Sum_probs=20.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
+.|.||+|+||||+++.+|..+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 6789999999999999999986
No 256
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.77 E-value=0.013 Score=53.79 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
+-|.||+|+||||+++.++..+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 6789999999999999999988754
No 257
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.014 Score=55.56 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.-+.+.||+|+|||++++.++..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34678999999999999999998863
No 258
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.69 E-value=0.032 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.+.||+|+||||+++.++..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999875
No 259
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.65 E-value=0.017 Score=52.50 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=28.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~ 276 (398)
.+-|.|.+|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 467999999999999999998 9999999874
No 260
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.64 E-value=0.015 Score=55.71 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|.++..-+++.|+||+|||+++..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45555568999999999999999888654 4566666654
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.62 E-value=0.014 Score=57.31 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+++.||+|+||||+.++++..+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 478999999999999999988763
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.58 E-value=0.019 Score=50.66 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=21.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh---cCCcEEEe
Q 048683 245 GYLLFGPPGTGKSNLIASMANH---LKFDIYHL 274 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~---l~~~~~~l 274 (398)
-++++||||+|||+++..++.. .+..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4689999999999998666554 35555544
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.55 E-value=0.022 Score=52.25 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=26.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
.+++.|+||||||+++-.+|..+ |.++..++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 48899999999999988888765 6776655543
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.52 E-value=0.03 Score=56.32 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 217 LKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 217 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
+.+.+.+.+...+.....--......++.+++.|++|+|||+++..+|..+ |..+.-+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 344555555555543210001111335678899999999999999888665 6666666554
No 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.49 E-value=0.018 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..-+.+.||+|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999998864
No 266
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.48 E-value=0.0087 Score=55.56 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=23.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhc-CCcEE
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL-KFDIY 272 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l-~~~~~ 272 (398)
-+.|.|++|+||||+++.+|+.+ +..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 47889999999999999999998 54444
No 267
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.47 E-value=0.023 Score=59.65 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999887766543
No 268
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.032 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=21.8
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..-+++.|++|+|||+|+.+++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998764
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.42 E-value=0.044 Score=52.22 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcChhHHhh-hcCcc-cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 216 ELKKMIIKDLDIFRNGKEYYRR-VGRVW-KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~~~~~-~g~~~-~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
..++.+.+.+...+.... .. +.... ++-+++.||+|+|||+++..+|..+ +..+..++..
T Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 345556666665554321 11 11111 4457789999999999999998776 5566655543
No 270
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.39 E-value=0.018 Score=60.12 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=27.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC----CcEEEeec
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK----FDIYHLDL 276 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~----~~~~~l~~ 276 (398)
-++|.|+||+|||++++++++.++ .+++.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 478999999999999999999986 67777764
No 271
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.023 Score=61.58 Aligned_cols=33 Identities=39% Similarity=0.483 Sum_probs=22.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
-+|+.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999998876554432 4455555443
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.31 E-value=0.025 Score=53.91 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhc-CcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 216 ELKKMIIKDLDIFRNGKEYYRRVG-RVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
.+++.+.+.+...+..... .. ...++-++|.||+|+|||+++..+|..+ |..+..++..
T Consensus 80 ~~~~~~~~~l~~~l~~~~~---~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG---SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCccc---ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4555555555544432221 11 1234558899999999999999988754 4556555543
No 273
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.30 E-value=0.016 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+||||+++.++..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999876
No 274
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.28 E-value=0.0093 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
.-++|.|.||+|||++++.+|..++..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 4589999999999999999999876443
No 275
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.24 E-value=0.037 Score=57.17 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=34.6
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHh
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
....++|-+...+.|.+.+.. . ....+-++++||+|+|||+||..+++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~----~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSK----L-------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTT----S-------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCeecccHHHHHHHHHHHhc----c-------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 345678888777777655531 0 112356889999999999999998753
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.20 E-value=0.031 Score=56.21 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=28.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
|.+...-+++.|+||+|||+++..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444458999999999999998777643 5677777664
No 277
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.10 E-value=0.03 Score=51.32 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=22.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhc-------CCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHL-------KFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l-------~~~~~~l~ 275 (398)
+.|.||+|+|||++++.+++.+ |++++...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 6788999999999999999987 66665554
No 278
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.09 E-value=0.02 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+++||.|+|||+++.||+-.++
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999998875
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.08 E-value=0.022 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+++.++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 280
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.024 Score=51.71 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.+.|++|+|||++++.+++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999994
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.02 E-value=0.024 Score=57.12 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.9
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s 277 (398)
|.+...-+++.||||+|||+++..+|... |.+++.++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444458999999999999998877653 5577776654
No 282
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.02 E-value=0.018 Score=59.27 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=23.3
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.++++.||+|+||||++++++..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999999874
No 283
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.01 E-value=0.022 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..+++.|+||+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998864
No 284
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.99 E-value=0.022 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.+.||+|+|||+|++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 285
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.99 E-value=0.026 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.9
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
+.-+.+.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999999876
No 286
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.91 E-value=0.025 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998864
No 287
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.90 E-value=0.097 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.||||+|||+|++.||+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999988864
No 288
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.89 E-value=0.038 Score=50.50 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
++++||||+|||+++..++..+ +..++.+.
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6789999999999887776655 55666553
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.025 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+.|.||.|+|||||+++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999975
No 290
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.83 E-value=0.033 Score=65.59 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=32.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTDI 279 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (398)
|++..+.+|++||||||||+++.+++.+. |.+.+.+++.+.
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1120 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 46667779999999999999999887654 667777776654
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.79 E-value=0.022 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.78 E-value=0.044 Score=63.67 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=33.0
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHh---cCCcEEEeecccc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANH---LKFDIYHLDLTDI 279 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~---l~~~~~~l~~s~~ 279 (398)
|++..+.++|+||||||||++|.++|.. .|..++.++....
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCc
Confidence 5777788999999999999999988765 3667777776553
No 293
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.77 E-value=0.044 Score=53.26 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=29.4
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
|..+..-+++.|+||+|||+++..+|... +.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 44444458999999999999998887763 6777666654
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.77 E-value=0.029 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=21.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+|||||++.|+..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 367899999999999999999764
No 295
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.77 E-value=0.023 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+.+.|+||+|||+|+++++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.75 E-value=0.026 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 297
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.73 E-value=0.038 Score=55.67 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=29.1
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeeccc
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLTD 278 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s~ 278 (398)
..+..-+++.|+||+|||+++..+|... |.++..+++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4334448999999999999988777654 66777776553
No 298
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.70 E-value=0.025 Score=47.83 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999764
No 299
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.70 E-value=0.022 Score=58.51 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=23.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcCC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
..+.|.|++|+|||++++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999985
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.68 E-value=0.029 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998653
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.64 E-value=0.029 Score=49.06 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=25.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
+-+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999998875 45555444
No 302
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.63 E-value=0.03 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 303
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.59 E-value=0.031 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.57 E-value=0.031 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 305
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.53 E-value=0.03 Score=57.10 Aligned_cols=39 Identities=10% Similarity=-0.052 Sum_probs=29.0
Q ss_pred CcccccceeeCCCCCCchHHHHHHHHhc----CCcEEEeeccc
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIASMANHL----KFDIYHLDLTD 278 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~aiA~~l----~~~~~~l~~s~ 278 (398)
.+...-+++.|+||+|||+++..+|... |.++..++...
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 4444448999999999999998887764 45677776543
No 306
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.53 E-value=0.033 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 307
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.49 E-value=0.027 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.+++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.46 E-value=0.023 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=19.3
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+++.|+||+|||+|++.++..
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999873
No 309
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.031 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 310
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.43 E-value=0.034 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..+++.|++|+|||+|+.++....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999988753
No 311
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.41 E-value=0.035 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 312
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.41 E-value=0.034 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 313
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.39 E-value=0.099 Score=53.39 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=31.3
Q ss_pred ceeeCCCCCCchHH-HHHHHHhcCCcEEEeecccccChHHHHHHHHc
Q 048683 246 YLLFGPPGTGKSNL-IASMANHLKFDIYHLDLTDIQFSSDLQFLLLT 291 (398)
Q Consensus 246 iLL~GPPGTGKT~l-a~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~ 291 (398)
+++.|++|||||++ ...|++..+.+++.+-+.--....++.++...
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~ 212 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTN 212 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHH
Confidence 89999999999999 57999998877554432222234445444433
No 314
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.38 E-value=0.031 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.||.|+|||||.++++....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567999999999999999999864
No 315
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.35 E-value=0.024 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+.|.||.|+|||||+++|+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999876
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.34 E-value=0.03 Score=54.64 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFD 270 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~ 270 (398)
..-+.+.||+|+|||||+++|+..+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999987654
No 317
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.32 E-value=0.034 Score=50.36 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=30.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC---CcEEEeeccccc-ChHHHHHHHHc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK---FDIYHLDLTDIQ-FSSDLQFLLLT 291 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~---~~~~~l~~s~~~-~~~~L~~l~~~ 291 (398)
+.|.||+|+|||++++.+++.+. ++++......-. -...+++++..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~ 58 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLA 58 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhc
Confidence 67889999999999999999874 566655433211 12335555553
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.32 E-value=0.033 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-++|.|++|+|||+|+++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999874
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.30 E-value=0.031 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.4
Q ss_pred ceeeCCCCCCchHHHHHHHH
Q 048683 246 YLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~ 265 (398)
+++.|+||+|||+|+.+++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.30 E-value=0.03 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 321
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.30 E-value=0.1 Score=53.26 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=27.3
Q ss_pred ccccc--ceeeCCCCCCchHH-HHHHHHhcCCcEEEe
Q 048683 241 VWKRG--YLLFGPPGTGKSNL-IASMANHLKFDIYHL 274 (398)
Q Consensus 241 ~~~rg--iLL~GPPGTGKT~l-a~aiA~~l~~~~~~l 274 (398)
|..+| +++.|++|||||++ ...|++..+.+++.+
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 33444 89999999999999 579999998886544
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.30 E-value=0.036 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 323
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.27 E-value=0.037 Score=46.27 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.0
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+++.|++|+|||+|+.++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.26 E-value=0.051 Score=52.90 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=24.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
.-+.+.|+||+|||+++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 347899999999999999998775 44444443
No 325
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.26 E-value=0.029 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+.|.||.|+|||||.++++.....
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3789999999999999999987753
No 326
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.26 E-value=0.045 Score=49.71 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=25.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~ 275 (398)
-+.+.||+|+|||+.++.+++.++.+...+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 3678999999999999999999987544333
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.23 E-value=0.037 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
-.+++.|+||+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.16 E-value=0.025 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=23.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...+++.||+|+||||++++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45688999999999999999999875
No 329
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.14 E-value=0.038 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++||.|+|||++..||+-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998655
No 330
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.11 E-value=0.025 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++++....
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998765
No 331
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.09 E-value=0.041 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 332
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.08 E-value=0.041 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
..+++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999764
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.08 E-value=0.041 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|+||+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 334
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.08 E-value=0.074 Score=53.33 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 216 ELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 216 ~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
.+++.+.+.+...+.... ..+....++.+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 345555555555554321 12222234557888999999999999998876 445555554
No 335
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.03 E-value=0.033 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.9
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+.|.||.|+|||||.++++.....
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3779999999999999999987653
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.02 E-value=0.042 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
-.+++.|++|+|||+|+.++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.99 E-value=0.059 Score=52.53 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=24.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.|.||+|+|||+|++.|++....+...
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 7899999999999999999998765443
No 338
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.97 E-value=0.062 Score=49.15 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCCcEEEeecc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKFDIYHLDLT 277 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s 277 (398)
.+|++||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887777776544
No 339
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.96 E-value=0.034 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+.|.||+|+|||||+++|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 367899999999999999998763
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.96 E-value=0.036 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.95 E-value=0.045 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 342
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.91 E-value=0.043 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.90 E-value=0.036 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+.|.||.|+|||||.++++..+..
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 779999999999999999988753
No 344
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.89 E-value=0.034 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.||.|+|||||.++++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3478999999999999999999864
No 345
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.034 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++|+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998764
No 346
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.87 E-value=0.052 Score=46.02 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.++...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 347
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.86 E-value=0.072 Score=53.58 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=24.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
+.|.||+|+|||+|++.||+....+.-.
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~~G~ 187 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRADVIV 187 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCeEE
Confidence 7899999999999999999998765433
No 348
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.85 E-value=0.03 Score=52.08 Aligned_cols=24 Identities=46% Similarity=0.761 Sum_probs=21.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+.|.||.|+|||||.++++.....
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 779999999999999999988753
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.82 E-value=0.035 Score=46.54 Aligned_cols=20 Identities=45% Similarity=0.750 Sum_probs=18.4
Q ss_pred ceeeCCCCCCchHHHHHHHH
Q 048683 246 YLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~ 265 (398)
+++.|+||+|||+|+.++.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999864
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.82 E-value=0.046 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.+++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 351
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.82 E-value=0.046 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
..+++.|++|+|||+|+.+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 34899999999999999999864
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.81 E-value=0.041 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+.|.||.|+|||||.++|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3779999999999999999986
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.73 E-value=0.029 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=23.2
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
...+++.||+|+||||++++++....
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34689999999999999999999875
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.71 E-value=0.046 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.5
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.71 E-value=0.038 Score=56.78 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=23.7
Q ss_pred cCcccccceeeCCCCCCchHHHHHHHHhc
Q 048683 239 GRVWKRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 239 g~~~~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
|++...-+++.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44445558999999999999999998764
No 356
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.70 E-value=0.046 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||.|+|||||+++|+...
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999974
No 357
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.67 E-value=0.039 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||.|+|||||+++++..+.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 78999999999999999998764
No 358
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.66 E-value=0.043 Score=46.52 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 359
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.053 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
-.+++.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.65 E-value=0.044 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+++.|+||+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998753
No 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.65 E-value=0.039 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.+.|+||+|||+|+.+++...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998753
No 362
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.63 E-value=0.086 Score=53.84 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=25.2
Q ss_pred ceeeCCCCCCchHH-HHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNL-IASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~l-a~aiA~~l~~~~~~l 274 (398)
.++.|++|||||++ ...|++..+.+++.+
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 89999999999999 579999998886544
No 363
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.63 E-value=0.037 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.7
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||+++|+..+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999999875
No 364
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.62 E-value=0.041 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++|+..+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 377999999999999999998865
No 365
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.62 E-value=0.05 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999764
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.61 E-value=0.043 Score=47.00 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.61 E-value=0.043 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+..++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 368
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.052 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.++....
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 369
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.58 E-value=0.052 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 370
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.57 E-value=0.053 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 371
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.57 E-value=0.053 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 372
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.56 E-value=0.077 Score=48.48 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=24.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc--CCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL--KFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l--~~~~~~l~ 275 (398)
-+++.|++|+|||+++..+|..+ +..+..++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999999999999998765 55554444
No 373
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.55 E-value=0.039 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+.|.||.|+|||||.++|+..+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3789999999999999999998753
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.55 E-value=0.054 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999888754
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.55 E-value=0.041 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.-+.|.||.|+|||||.++|+....
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3478999999999999999998764
No 376
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.53 E-value=0.11 Score=49.42 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=25.7
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeec
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDL 276 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~ 276 (398)
++-+.+.||+|+|||+++..+|..+ +..+..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457788999999999999998775 455555543
No 377
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.53 E-value=0.04 Score=51.11 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcCC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
-+.|.||.|+|||||.++++..+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3779999999999999999998754
No 378
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.49 E-value=0.044 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+|||++++.++..++
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999998873
No 379
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.40 E-value=0.14 Score=49.81 Aligned_cols=23 Identities=43% Similarity=0.665 Sum_probs=20.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||||+|||||..+++..+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37799999999999999999754
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.40 E-value=0.038 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+++.|+||+|||+|+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999874
No 381
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.40 E-value=0.042 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++++....
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999999765
No 382
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.38 E-value=0.055 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999865
No 383
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.38 E-value=0.044 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+.|.||.|+|||||.++++..+..
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 779999999999999999998753
No 384
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.38 E-value=0.057 Score=46.62 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++....
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 385
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.37 E-value=0.058 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
-.+++.|++|+|||+|+.++....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998653
No 386
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.37 E-value=0.057 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 387
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.36 E-value=0.13 Score=52.84 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=33.0
Q ss_pred ccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHH
Q 048683 212 ALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 212 ~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~ 265 (398)
+|-++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 48888888887776421 111235678999999999999999997
No 388
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.32 E-value=0.06 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3899999999999999998864
No 389
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.29 E-value=0.045 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 390
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.28 E-value=0.047 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++|+....
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998764
No 391
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.27 E-value=0.061 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.25 E-value=0.06 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 393
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.24 E-value=0.061 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.9
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+++.|++|+|||+|+.++....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.23 E-value=0.056 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
-.+++.|+||+|||+|+.++...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.23 E-value=0.058 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||||+|||||+++++..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999764
No 396
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.23 E-value=0.045 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++++....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 397
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.22 E-value=0.061 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 398
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.20 E-value=0.048 Score=50.99 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||.++|+....
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.19 E-value=0.052 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+.++++.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 400
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.19 E-value=0.064 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999887764
No 401
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.18 E-value=0.048 Score=56.01 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=26.6
Q ss_pred CcccccceeeCCCCCCchHHHHH--HHHhc--CCcEEEeeccc
Q 048683 240 RVWKRGYLLFGPPGTGKSNLIAS--MANHL--KFDIYHLDLTD 278 (398)
Q Consensus 240 ~~~~rgiLL~GPPGTGKT~la~a--iA~~l--~~~~~~l~~s~ 278 (398)
++...-++|.||+|+|||+|++. ++... +-..+.++..+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 44455689999999999999999 44433 33445555433
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.18 E-value=0.054 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 67999999999999999998764
No 403
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.17 E-value=0.061 Score=51.69 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=24.8
Q ss_pred ccccceeeCCCCCCchHHHHHHHHhcCCcEEE
Q 048683 242 WKRGYLLFGPPGTGKSNLIASMANHLKFDIYH 273 (398)
Q Consensus 242 ~~rgiLL~GPPGTGKT~la~aiA~~l~~~~~~ 273 (398)
..+|+||.||+|+|||++|.++.. -|..++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 357899999999999999988865 4555543
No 404
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.14 E-value=0.046 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 67999999999999999999764
No 405
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.13 E-value=0.049 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||.|+|||||+++++....
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 377999999999999999999764
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.12 E-value=0.056 Score=53.04 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 67999999999999999999764
No 407
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.11 E-value=0.18 Score=52.28 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=31.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEeecccccChHHHHHHHHc
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHLDLTDIQFSSDLQFLLLT 291 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~ 291 (398)
+++.|++|||||.++..||+..+.+++.+-+-.- ...++.+++..
T Consensus 235 ~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~~iGE-R~~Ev~e~~~~ 279 (600)
T 3vr4_A 235 AAVPGPFGAGKTVVQHQIAKWSDVDLVVYVGCGE-RGNEMTDVVNE 279 (600)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSSCSEEEEEEEEE-CHHHHHHHHHH
T ss_pred EeeecCCCccHHHHHHHHHhccCCCEEEEEEecc-cHHHHHHHHHH
Confidence 8899999999999999999988776544332221 23445444433
No 408
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.09 E-value=0.065 Score=46.49 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|+||+|||+|+.++....
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 409
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.09 E-value=0.064 Score=47.03 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
--+++.|+||+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999854
No 410
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.08 E-value=0.064 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++...-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998643
No 411
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.04 E-value=0.083 Score=46.27 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=31.5
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCc---ccccceeeCCCCCCchHHH-HHHHHh
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV---WKRGYLLFGPPGTGKSNLI-ASMANH 266 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GPPGTGKT~la-~aiA~~ 266 (398)
+|+++...+.+.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||..+ ..+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR---GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 467777776666555321 11122222222211 1356999999999999763 344444
No 412
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.03 E-value=0.057 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHCCCC
Confidence 67999999999999999999764
No 413
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.02 E-value=0.058 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 67999999999999999999875
No 414
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.01 E-value=0.076 Score=51.07 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcCCcEE
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLKFDIY 272 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~~~~~ 272 (398)
.+|+||.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999875 55544
No 415
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.01 E-value=0.064 Score=48.97 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=23.6
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC----cEEE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF----DIYH 273 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~----~~~~ 273 (398)
+.+.|++|+|||++++.+++.++. +++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 678899999999999999998654 5555
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.00 E-value=0.052 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..+++.|+||+|||+|+.++.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
No 417
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.057 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
.+++.|++|+|||+|+.++....
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 418
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.99 E-value=0.05 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
..+.|.|+||+|||+|+.+++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999875
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.057 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.6
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 420
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.97 E-value=0.049 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+++.|++|+|||+|+.++...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 348999999999999999998753
No 421
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.95 E-value=0.045 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=9.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
--+++.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988754
No 422
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.91 E-value=0.052 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.754 Sum_probs=21.0
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||.|+|||||.++|+...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999999876
No 423
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.88 E-value=0.065 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-++|.|++|+|||+|+.++....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999998754
No 424
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.86 E-value=0.06 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|+||+|||+|+.++...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 34899999999999999999853
No 425
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.85 E-value=0.061 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+|||||.++||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 367999999999999999998764
No 426
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.84 E-value=0.061 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCChHHHHHHHHHcCCC
Confidence 67999999999999999999764
No 427
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.82 E-value=0.06 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 428
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.80 E-value=0.15 Score=51.92 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.3
Q ss_pred ceeeCCCCCCchHH-HHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNL-IASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~l-a~aiA~~l~~~~~~l 274 (398)
.++.|++|||||++ ...|++..+.+++.+
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V 194 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQRDSGIKCI 194 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTSSSSCEEE
T ss_pred EEeecCCCCCcchHHHHHHHhhccCCceEE
Confidence 89999999999999 478999877776443
No 429
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.80 E-value=0.028 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||+|+|||+|+++++...
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987644
No 430
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.80 E-value=0.061 Score=48.66 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=29.4
Q ss_pred ceeeCCCCCCchHHHHHHHHhc---CC-cEEEeeccc-ccChHHHHHHHH
Q 048683 246 YLLFGPPGTGKSNLIASMANHL---KF-DIYHLDLTD-IQFSSDLQFLLL 290 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l---~~-~~~~l~~s~-~~~~~~L~~l~~ 290 (398)
+.|.|++|+|||+.++.+++.+ ++ .++...-.. ..-...+++++.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 6788999999999999999987 44 443333221 111244566665
No 431
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.77 E-value=0.16 Score=51.45 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=22.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+++.|++|+|||+|+..||+....
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 778899999999999999998875
No 432
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.70 E-value=0.16 Score=45.06 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCc---ccccceeeCCCCCCchHHHHHHHH
Q 048683 204 HAMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV---WKRGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 204 ~p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GPPGTGKT~la~aiA~ 265 (398)
+..+|+++...+.+.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||..+-..+-
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 445788888887777766431 12223333332221 135699999999999986554443
No 433
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.67 E-value=0.064 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||||+|||||+++|+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999998765
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.64 E-value=0.063 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+++.|++|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999999999998875
No 435
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.64 E-value=0.065 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.62 E-value=0.077 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.5
Q ss_pred ccceeeCCCCCCchHHHHHHHH
Q 048683 244 RGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~ 265 (398)
--+++.|+||+|||+|+..+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999999864
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.58 E-value=0.079 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 438
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.56 E-value=0.068 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.9
Q ss_pred cccceeeCCCCCCchHHHHHHHH
Q 048683 243 KRGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~ 265 (398)
..-+++.|+||+|||+|+.++..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999998874
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.55 E-value=0.088 Score=52.80 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.5
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+.|.||+|+|||||+++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999886
No 440
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.55 E-value=0.077 Score=47.37 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.2
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
.+++||.|+|||++..||.-.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 589999999999999999877754
No 441
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.53 E-value=0.19 Score=51.80 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+++.|++|||||.++..||+..+.+++.+
T Consensus 224 ~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~ 252 (578)
T 3gqb_A 224 AAIPGPFGSGKSVTQQSLAKWSNADVVVY 252 (578)
T ss_dssp EEECCCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred EeeeCCCCccHHHHHHHHHhccCCCEEEE
Confidence 88999999999999999999887765443
No 442
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.069 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|+||+|||+|+.++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999873
No 443
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.48 E-value=0.042 Score=56.95 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.1
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+||||++++||..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 378999999999999999999985
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.44 E-value=0.047 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|+||+|||+|+.+++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999865
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.40 E-value=0.034 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+.+.||+|+|||++++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999998864
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.40 E-value=0.071 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 447
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.35 E-value=0.09 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.5
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+..++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999853
No 448
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.32 E-value=0.082 Score=48.88 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=23.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcE
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDI 271 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~ 271 (398)
+.|.|+||+|||+.++.++..+|+++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 56899999999999999999889775
No 449
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.28 E-value=0.077 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 450
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.25 E-value=0.073 Score=55.07 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=25.8
Q ss_pred ccceeeCCCCCCchHHHHHHHHhcC---CcEEEee
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHLK---FDIYHLD 275 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l~---~~~~~l~ 275 (398)
.-++|.|+||+|||++++.+++.++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 3478999999999999999999875 4555555
No 451
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.24 E-value=0.14 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.4
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+.|.||+|+|||||+++++..
T Consensus 72 valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 678999999999999999984
No 452
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.24 E-value=0.07 Score=45.95 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.3
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
--+++.|++|+|||+|+.++...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999853
No 453
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.20 E-value=0.083 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
..-+.+.||.|+|||||++.||+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3348899999999999999999986
No 454
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.16 E-value=0.077 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 455
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.12 E-value=0.052 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=21.1
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEECCCCccHHHHHHHHHcCCC
Confidence 67999999999999999999764
No 456
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.11 E-value=0.037 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.+.||+|+|||++.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999999874
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.10 E-value=0.082 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 458
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.05 E-value=0.22 Score=47.19 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=34.2
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCc----ccccceeeCCCCCCchHHHHHHHH
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV----WKRGYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GPPGTGKT~la~aiA~ 265 (398)
.+|+++...+.+.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||..+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4688887777776666431 12222233332222 135789999999999987654443
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.082 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.98 E-value=0.066 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 461
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.97 E-value=0.072 Score=46.71 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.6
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
-.+++.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
No 462
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.97 E-value=0.078 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+|||||+++++....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 367899999999999999998765
No 463
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.96 E-value=0.067 Score=50.79 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=24.7
Q ss_pred hhcCccccc--ceeeCCCCCCchHHHHHHHHhcC
Q 048683 237 RVGRVWKRG--YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 237 ~~g~~~~rg--iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
.+....+.| +.|.||.|+|||||.++|+....
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 333334444 78999999999999999998764
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.95 E-value=0.16 Score=45.57 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=31.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhc--CCcEEEeeccc-ccChHHHHHHHHc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL--KFDIYHLDLTD-IQFSSDLQFLLLT 291 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l--~~~~~~l~~s~-~~~~~~L~~l~~~ 291 (398)
|.|-|+.|+||||.++.+++.+ +.+++...-.. ......+++++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~ 53 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLE 53 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhc
Confidence 5678999999999999999988 55666554322 1123445665544
No 465
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.93 E-value=0.049 Score=47.87 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.1
Q ss_pred cceeeCCCCCCchHHHHHHHH
Q 048683 245 GYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~ 265 (398)
-+++.|+||+|||+|+.+++.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 466
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.085 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.5
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
..+++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 467
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.90 E-value=0.33 Score=54.04 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHh
Q 048683 205 AMTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 205 p~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
|.....++|-++..++|.+.+... ....+-+.++|++|+|||+||+.+++.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 444566889888888777665311 012345789999999999999998876
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.87 E-value=0.094 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-++|.|+||+|||+|+.++...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999863
No 469
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.85 E-value=0.1 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+.|.||+|+|||||+++++ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 36789999999999999999 654
No 470
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.82 E-value=0.08 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.2
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.+++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999999764
No 471
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.76 E-value=0.08 Score=46.40 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.9
Q ss_pred cceeeCCCCCCchHHHHHHHH
Q 048683 245 GYLLFGPPGTGKSNLIASMAN 265 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~ 265 (398)
-+++.|+||+|||+|+..+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.11 Score=46.46 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.75 E-value=0.096 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.1
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
.+++.|++|+|||+|+.++...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 474
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.67 E-value=0.1 Score=45.06 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.0
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
.-+++.|++|+|||+|+.++...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999998754
No 475
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.62 E-value=0.095 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+.|.|+||+|||+|..+++..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999874
No 476
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.61 E-value=0.095 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999998764
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.61 E-value=0.23 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.7
Q ss_pred ceeeCCCCCCchHHHHHHHHh
Q 048683 246 YLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~ 266 (398)
+.+.|+||+|||+|..+++..
T Consensus 227 V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 889999999999999999875
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.60 E-value=0.093 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.1
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 479
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.57 E-value=0.19 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.3
Q ss_pred ceeeCCCCCCchHHHHHHHHhc
Q 048683 246 YLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l 267 (398)
+.|.|+||+|||||.+++++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7799999999999999998753
No 480
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.50 E-value=0.12 Score=46.68 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=22.7
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCCcEEEe
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKFDIYHL 274 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~~~~~l 274 (398)
+.|.||.|+||||+++.++.. +..+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 678999999999999999998 4444433
No 481
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.50 E-value=0.12 Score=45.93 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=34.9
Q ss_pred CCccccccChHHHHHHHHHHHHHhcChhHHhhhcCc---ccccceeeCCCCCCchHH-HHHHHHh
Q 048683 206 MTFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV---WKRGYLLFGPPGTGKSNL-IASMANH 266 (398)
Q Consensus 206 ~~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GPPGTGKT~l-a~aiA~~ 266 (398)
.+|+++...+.+.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||.. +-.+...
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4799998887777666432 12223333332211 135699999999999976 3344443
No 482
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.50 E-value=0.085 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.3
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.48 E-value=0.097 Score=46.03 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.8
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|+||+|||+|+..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 484
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.46 E-value=0.09 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+.|.||+|+|||||.++||...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 37899999999999999999865
No 485
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.45 E-value=0.059 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-+++.|++|+|||+|+.++....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999987654
No 486
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.38 E-value=0.19 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.7
Q ss_pred ceeeCCCCCCchHH-HHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNL-IASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~l-a~aiA~~l~ 268 (398)
.++.|++|||||++ ...|++...
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHh
Confidence 89999999999999 567777765
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.37 E-value=0.058 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=4.2
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+.++...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988765
No 488
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.36 E-value=0.057 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.0
Q ss_pred ceeeCCCCCCchHHHHHHHHhcC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~ 268 (398)
+.|.||+|+|||||.++||....
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 67999999999999999998764
No 489
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.35 E-value=0.19 Score=44.56 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=24.2
Q ss_pred cceeeCCCCCCchHHHHHHHHhc---CCcEEEee
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL---KFDIYHLD 275 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l---~~~~~~l~ 275 (398)
-++++||+|+|||+.+..+|..+ +..++.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36789999999998887776664 66776665
No 490
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.32 E-value=0.12 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.0
Q ss_pred cceeeCCCCCCchHHHHHHHHhc
Q 048683 245 GYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l 267 (398)
-++|.||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38899999999999999887654
No 491
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.25 E-value=0.23 Score=48.61 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=27.4
Q ss_pred cccceeeCCCCCCchHHHHHHHHhc---CCcEEEeecc
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHL---KFDIYHLDLT 277 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l---~~~~~~l~~s 277 (398)
...+++.||+|+|||++++.++..+ +..++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999999887653 5667777653
No 492
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.23 E-value=0.58 Score=52.14 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.9
Q ss_pred ccChHHHHHHHHHHHHHhcChhHHhhhcCcccccceeeCCCCCCchHHHHHHHHhc------CCcEEEeecccc
Q 048683 212 ALDSELKKMIIKDLDIFRNGKEYYRRVGRVWKRGYLLFGPPGTGKSNLIASMANHL------KFDIYHLDLTDI 279 (398)
Q Consensus 212 ~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rgiLL~GPPGTGKT~la~aiA~~l------~~~~~~l~~s~~ 279 (398)
+|-++..+.|.+.+... ...+-+.++||+|.|||+||+.+++.. ...++.++.+..
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 67777777776665410 113568899999999999999998642 334566665543
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.18 E-value=0.13 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.9
Q ss_pred cceeeCCCCCCchHHHHHHHHh
Q 048683 245 GYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~ 266 (398)
-+++.|++|+|||+|+..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 494
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.14 E-value=0.11 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred cceeeCCCCCCchHHHHHHHHhcC
Q 048683 245 GYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 245 giLL~GPPGTGKT~la~aiA~~l~ 268 (398)
-+-|.||.|+|||||+++|+....
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 377999999999999999999764
No 495
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.11 E-value=0.11 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.1
Q ss_pred ccceeeCCCCCCchHHHHHHHHh
Q 048683 244 RGYLLFGPPGTGKSNLIASMANH 266 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~ 266 (398)
-.+++.|++|+|||+|+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 34899999999999999998864
No 496
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.03 E-value=0.11 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred ccceeeCCCCCCchHHHHHHHHhc
Q 048683 244 RGYLLFGPPGTGKSNLIASMANHL 267 (398)
Q Consensus 244 rgiLL~GPPGTGKT~la~aiA~~l 267 (398)
.-+.+.||||+|||+++.+++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347789999999999999998764
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.02 E-value=0.067 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.6
Q ss_pred cccceeeCCCCCCchHHHHHHHHhcC
Q 048683 243 KRGYLLFGPPGTGKSNLIASMANHLK 268 (398)
Q Consensus 243 ~rgiLL~GPPGTGKT~la~aiA~~l~ 268 (398)
..-+.|.||.|+|||||+++|+..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34488999999999999999999774
No 498
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.90 E-value=0.15 Score=44.58 Aligned_cols=52 Identities=25% Similarity=0.150 Sum_probs=29.0
Q ss_pred CccccccChHHHHHHHHHHHHHhcChhHHhhhcCc---ccccceeeCCCCCCchHHHH
Q 048683 207 TFKDLALDSELKKMIIKDLDIFRNGKEYYRRVGRV---WKRGYLLFGPPGTGKSNLIA 261 (398)
Q Consensus 207 ~f~~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GPPGTGKT~la~ 261 (398)
+|+++...+++.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||..+.
T Consensus 4 ~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEM---GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp SGGGSCCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred ChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHH
Confidence 577777666666555321 01122222221111 13679999999999996544
No 499
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.88 E-value=0.31 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred ceeeCCCCCCchHHHHHHHHhcCC
Q 048683 246 YLLFGPPGTGKSNLIASMANHLKF 269 (398)
Q Consensus 246 iLL~GPPGTGKT~la~aiA~~l~~ 269 (398)
+++.|++|+|||+|+..||+....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEeCCCCcChHHHHHHHHHHHHh
Confidence 788999999999999999998765
No 500
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.85 E-value=0.18 Score=45.27 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=28.3
Q ss_pred cccccceeeCCCCCCchHHHHHHHHhcCCc-EEEeeccc
Q 048683 241 VWKRGYLLFGPPGTGKSNLIASMANHLKFD-IYHLDLTD 278 (398)
Q Consensus 241 ~~~rgiLL~GPPGTGKT~la~aiA~~l~~~-~~~l~~s~ 278 (398)
.++.-+++.|.||+||++++..+.+.++.. +..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 355678999999999999999999877542 33344443
Done!