BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048685
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 9 LGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP 67
+G+L+++V + +L D + SDP+ ++ +G +++TH + N NP WN T PI+D
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 68 NLPVHLTVYDKDTFSVDDKMGEANI 92
+ + +TV+D+D D +G+ I
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLGKVAI 96
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 7 SMLGLLKIRVKRGINL-AVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIR 65
S +G L + V L A + S+PY I+MG Q T I NP WN + I+
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIK 443
Query: 66 DPNLPVH-LTVYDKDTFSVDDKMGEANIDI 94
D V LT++D+D FS DD +G I +
Sbjct: 444 DLYQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 11 LLKIRVKRGINLAVRDAL-SSDPYVVITMGK------QKMKTHVINSNCNPVWNCDLTLP 63
++++RV GI LA +D L +SDPYV +T+ ++T I + NP WN ++
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 64 IRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKP 96
+ + V+D++ + DD +G+ ++ + P
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYP 113
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 12 LKIRVKRGINLAVRDALS-SDPYVVITM---GKQKMKTHVINSNCNPVWN--CDLTLPIR 65
L +R+ + ++L +D+ SDPYV I + K+K +T V NP++N ++P+
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 66 D-PNLPVHLTVYDKDTFSVDDKMGEANID 93
+ +H +VYD D FS D +G+ +D
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 12 LKIRVKRGINLAVRDALS-SDPYVVITM---GKQKMKTHVINSNCNPVWN--CDLTLPIR 65
L +R+ + ++L +D+ SDPYV I + K+K +T V NP++N ++P+
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 66 D-PNLPVHLTVYDKDTFSVDDKMGEANID 93
+ +H +VYD D FS D +G+ +D
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 14 IRVKRGINLAVRDALSSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTL---PIRD- 66
I+ RG+ +++SDPY+ +T+ K K+KT V+ +P ++ T P
Sbjct: 28 IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87
Query: 67 PNLPVHLTVYDKDTFSVDDKMGEANI 92
L +H T+ D FS DD +GE I
Sbjct: 88 QELALHFTILSFDRFSRDDIIGEVLI 113
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 11 LLKIRVKRGINLAVRDAL-SSDPYVVITMGKQK-------MKTHVINSNCNPVWNCDLTL 62
+L+++V GI+LA +D +SDPYV +++ ++T I NP WN +
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 63 PIRDPNLPVHLTVYDKDTFSVDDKMGEANI 92
+ N + V+D++ + DD +G+ ++
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDV 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 11 LLKIRVKRGINLAVRDAL-SSDPYVVITMGK------QKMKTHVINSNCNPVWNCDLTLP 63
+++++V GI LA +D L +SDPYV +T+ ++T I + NP WN ++
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 64 IRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKP 96
+ + V+D++ + DD +G+ ++ + P
Sbjct: 69 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYP 101
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 29 SSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKD 79
SSDPYV + +GK K +T I N NPVW + + + + + V D+D
Sbjct: 37 SSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 10 GLLKIRVKRGINLAVRDALSS-DPYVVITMGKQKMKTHVINS-NCNPVWNCDLTLPIRDP 67
G L++ + L D L++ DPYV +T Q K++V P WN + +
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 68 NLPVHLTVYDKDTFSVDDKMGEANIDIKP 96
+ ++DKD + DD +GEA I ++P
Sbjct: 70 TTELKAKIFDKDVGTEDDAVGEATIPLEP 98
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 32 PYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEAN 91
PYV +T+ Q KT N+ +P W LT+ I P +H V+ T D +G A
Sbjct: 59 PYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV-IVTPVSKLHFRVWSHQTLKSDVLLGTAA 117
Query: 92 IDIKPYIACLKMGLENL 108
+DI + M LE +
Sbjct: 118 LDIYETLKSNNMKLEEV 134
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 12 LKIRVKRGINLAVRD-ALSSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDP 67
L +++ + L +D + +SDP+V I + K K++T V N NP WN
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 83
Query: 68 NLP--------VHLTVYDKDTFSVDDKMGEANIDI 94
P ++L V D D FS +D +GE +I +
Sbjct: 84 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 29 SSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDPNLP---VHLTVYDKDTFS 82
+SDPYV + + K+K +T V NPV+N T + L + + VYD D FS
Sbjct: 39 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98
Query: 83 VDDKMGEANI 92
D +GE +
Sbjct: 99 KHDIIGEFKV 108
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 29 SSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDPNL---PVHLTVYDKDTFS 82
+SDPYV + + K+K +T V NPV+N T + L + + VYD D FS
Sbjct: 37 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 96
Query: 83 VDDKMGEANI 92
D +GE +
Sbjct: 97 KHDIIGEFKV 106
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 29 SSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDPNL---PVHLTVYDKDTFS 82
+SDPYV + + K+K +T V NPV+N T + L + + VYD D FS
Sbjct: 62 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121
Query: 83 VDDKMGEANI 92
D +GE +
Sbjct: 122 KHDIIGEFKV 131
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 29 SSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDPNL---PVHLTVYDKDTFS 82
+SDPYV + + K+K +T V NPV+N T + L + + VYD D FS
Sbjct: 54 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 83 VDDKMGEANI 92
D +GE +
Sbjct: 114 KHDIIGEFKV 123
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 29 SSDPYVVITM---GKQKMKTHVINSNCNPVWNCDLTLPIRDPNL---PVHLTVYDKDTFS 82
+SDPYV + + K+K +T V NPV+N T + L + + VYD D FS
Sbjct: 54 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 83 VDDKMGEANI 92
D +GE +
Sbjct: 114 KHDIIGEFKV 123
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 20 INLAVRDALS---------SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIR 65
+++ VRDA + SDPYV + + + K KT I S NP WN T ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 66 --DPNLPVHLTVYDKDTFSVDDKMGEANIDI 94
D + + + ++D D + +D MG + +
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV 109
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 20 INLAVRDALS---------SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIR 65
+++ VRDA + SDPYV + + + K KT I S NP WN T ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 66 --DPNLPVHLTVYDKDTFSVDDKMGEANIDI 94
D + + + ++D D + +D MG + +
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV 108
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 30 SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTV--YDKDTFS 82
SDPYV + + + K KT I S+ NP WN +++ + L+V +D D S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 83 VDDKMGEANIDI 94
+D MG + I
Sbjct: 253 RNDFMGSLSFGI 264
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 9 LGLLKIRVKRGINLAVRDALS-SDPYVVITM--------------GKQKMKTHVINSNCN 53
LG L I + + NL RD SDP+V + + + K +T + + N
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 54 PVWNCDLTL-PIRDPNL---PVHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMGLENLP 109
P WN + I L + +TV+D D FS +D +GE ID+ L+N P
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS-----TSHLDNTP 131
Query: 110 NGCAIKK 116
+K+
Sbjct: 132 RWYPLKE 138
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 20 INLAVRDALS---------SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIR 65
+++ VRDA + SDPYV + + + K KT I S NP WN T ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 66 --DPNLPVHLTVYDKDTFSVDDKMGEANIDI 94
D + + + ++D D + +D G + +
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGV 110
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 30 SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTV--YDKDTFS 82
SDPYV + + + K KT I + NP WN +++ + L+V +D D S
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 83 VDDKMGEANIDI 94
+D MG + I
Sbjct: 112 RNDFMGSLSFGI 123
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 30 SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLT--VYDKDTFS 82
SDPYV + + K KT + + NPVWN ++ ++ L+ V+D D S
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 83 VDDKMGEANIDI 94
+D MG + +
Sbjct: 101 RNDFMGAMSFGV 112
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 11 LLKIRVKRGINLAVRDALSS-DPYV---VITMGKQKMKTHVINSNCNPVWNCDLTLPIRD 66
L +V +G A D L + DPYV + T + +T N++ NPVWN I D
Sbjct: 10 LRATKVTKG---AFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILD 65
Query: 67 PNLP--VHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMG 104
PN + +T+ D + + +D+ +G A ++ +K+G
Sbjct: 66 PNQENVLEITLMDAN-YVMDETLGTATFT----VSSMKVG 100
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 32.7 bits (73), Expect = 0.095, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 29 SSDPYV---VITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLP--VHLTVYDKDTFSV 83
+ DPYV + T + +T N++ NPVWN I DPN + +T+ D + + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVM 98
Query: 84 DDKMGEANIDI 94
D+ +G A +
Sbjct: 99 DETLGTATFTV 109
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 SSDPYVVITMGKQKMKTHVINSNCNPVWN--CDLTLPIRDPNLPVHLTVYDKDTFSVDDK 86
++D Y+ + G Q+ +T V+ +N NP W D + P+ + V+D D DD
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 87 MGEAN 91
+G +
Sbjct: 473 LGSCD 477
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 7 SMLGLLKIRVKRGINLAVRDALSS-DPYV---VITMGKQKMKTHVINSNCNPVWNCDLTL 62
+++ L +V +G A D L + DPYV + T + +T N++ NPVWN
Sbjct: 21 TVVVLRATKVTKG---AFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 63 PIRDPNLP--VHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMG 104
I DPN + +T+ D + + +D+ +G A ++ +K+G
Sbjct: 78 -ILDPNQENVLEITLMDAN-YVMDETLGTATFT----VSSMKVG 115
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 30 SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLP-IRDPNLP---VHLTVYDKDT 80
+DPYV + + K++T + + NPVWN L I + ++ + ++V D+D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 81 FSVDDKMGEANIDIKPYIA 99
F ++ +GE +K A
Sbjct: 110 FGHNEFIGETRFSLKKLKA 128
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 30 SDPYVVITM-----GKQKMKTHVINSNCNPVWNCDLTLP-IRDPNLP---VHLTVYDKDT 80
+DPYV + + K++T + + NPVWN L I + ++ + ++V D+D
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 81 FSVDDKMGEANIDIKPYIA 99
F ++ +GE +K A
Sbjct: 108 FGHNEFIGETRFSLKKLKA 126
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 10 GLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIR---- 65
G+L++ V+ N+ DP V + +K KT +++ NPVWN L +R
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 66 DPNLPVHLTVYDKDTFSVDDKMGEANIDIK 95
D + + + V D +T + +G A + +K
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALK 96
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 29 SSDPYV-VITMGKQK----MKTHVINSNCNPVWNCDLTLPIRDPNL---PVHLTVYDKDT 80
+SDPYV V M K K KT N NP++N I L + +TV DKD
Sbjct: 36 TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK 95
Query: 81 FSVDDKMGEANIDIK 95
S +D +G+ + K
Sbjct: 96 LSRNDVIGKIYLSWK 110
>pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo
Length = 336
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 35 VITMGKQKMKTHVINSNCNPVWNCDLTLPIRD 66
+T+GKQ ++ N+NCNP L LP R
Sbjct: 133 ALTLGKQIHTLYLDNTNCNPA----LVLPSRQ 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,173,943
Number of Sequences: 62578
Number of extensions: 203862
Number of successful extensions: 381
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 36
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)