Query 048685
Match_columns 172
No_of_seqs 229 out of 1715
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 2.2E-35 4.8E-40 203.8 14.9 164 5-168 1-167 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 2.9E-31 6.3E-36 184.3 18.6 144 9-152 1-145 (145)
3 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-26 3.3E-31 155.9 14.1 91 9-99 1-93 (121)
4 cd08375 C2_Intersectin C2 doma 99.9 1.1E-24 2.5E-29 150.1 15.2 124 5-160 10-135 (136)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 8.7E-25 1.9E-29 148.9 12.7 88 12-99 1-95 (126)
6 cd04042 C2A_MCTP_PRT C2 domain 99.9 6.7E-24 1.4E-28 143.6 13.9 90 11-100 1-92 (121)
7 cd08376 C2B_MCTP_PRT C2 domain 99.9 9.8E-24 2.1E-28 141.7 14.3 113 11-161 1-115 (116)
8 cd08391 C2A_C2C_Synaptotagmin_ 99.9 5.5E-24 1.2E-28 143.8 12.7 113 10-160 1-121 (121)
9 cd08681 C2_fungal_Inn1p-like C 99.9 7.9E-24 1.7E-28 142.5 12.5 90 10-100 1-93 (118)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 1E-23 2.2E-28 143.0 13.0 89 12-100 2-100 (126)
11 cd08678 C2_C21orf25-like C2 do 99.9 3.9E-23 8.4E-28 140.8 14.2 121 12-164 1-123 (126)
12 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.4E-23 5.1E-28 142.0 12.9 88 11-98 1-94 (127)
13 cd04024 C2A_Synaptotagmin-like 99.9 4.4E-23 9.6E-28 140.7 13.6 90 10-99 1-94 (128)
14 cd04044 C2A_Tricalbin-like C2 99.9 3.8E-23 8.3E-28 140.2 12.9 93 9-101 1-97 (124)
15 cd04036 C2_cPLA2 C2 domain pre 99.9 4.6E-23 9.9E-28 139.1 12.7 111 12-160 2-117 (119)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 1.3E-22 2.9E-27 137.2 14.3 89 12-100 2-93 (121)
17 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.6E-22 3.4E-27 141.4 13.7 88 12-99 2-92 (150)
18 cd08377 C2C_MCTP_PRT C2 domain 99.9 3E-22 6.5E-27 134.9 14.4 90 10-99 1-91 (119)
19 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 5E-22 1.1E-26 136.4 14.5 90 11-100 1-98 (133)
20 cd08677 C2A_Synaptotagmin-13 C 99.9 2.1E-22 4.6E-27 134.1 10.1 96 2-99 6-108 (118)
21 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 9.2E-22 2E-26 133.1 13.3 88 12-99 2-91 (121)
22 cd08378 C2B_MCTP_PRT_plant C2 99.9 5E-22 1.1E-26 134.4 11.7 84 12-99 2-86 (121)
23 cd04046 C2_Calpain C2 domain p 99.9 2.4E-21 5.3E-26 131.9 14.6 89 8-97 1-90 (126)
24 cd04015 C2_plant_PLD C2 domain 99.9 1.8E-21 3.8E-26 137.4 14.3 92 8-100 5-128 (158)
25 cd04039 C2_PSD C2 domain prese 99.9 9E-22 1.9E-26 130.5 12.1 92 10-101 1-99 (108)
26 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 2.2E-21 4.7E-26 131.6 13.7 90 11-100 1-92 (123)
27 cd04014 C2_PKC_epsilon C2 doma 99.9 3.7E-21 8E-26 132.0 14.9 116 9-162 3-130 (132)
28 cd04017 C2D_Ferlin C2 domain f 99.9 3.9E-21 8.5E-26 132.4 14.8 120 10-163 1-134 (135)
29 cd08400 C2_Ras_p21A1 C2 domain 99.9 4E-21 8.7E-26 130.8 14.7 88 10-100 4-93 (126)
30 cd08395 C2C_Munc13 C2 domain t 99.9 1.2E-21 2.6E-26 131.8 11.8 90 11-100 1-101 (120)
31 cd08381 C2B_PI3K_class_II C2 d 99.9 9.9E-22 2.1E-26 133.1 10.7 92 9-100 12-112 (122)
32 cd04028 C2B_RIM1alpha C2 domai 99.9 1.8E-21 3.9E-26 135.0 11.8 91 9-99 28-126 (146)
33 cd04029 C2A_SLP-4_5 C2 domain 99.9 1.5E-21 3.2E-26 132.8 10.8 98 3-100 8-115 (125)
34 cd08373 C2A_Ferlin C2 domain f 99.9 8.6E-21 1.9E-25 129.4 14.1 116 16-169 2-124 (127)
35 cd04027 C2B_Munc13 C2 domain s 99.9 1.1E-20 2.3E-25 128.9 13.7 88 11-98 2-101 (127)
36 cd08382 C2_Smurf-like C2 domai 99.9 1.3E-20 2.7E-25 127.9 13.8 89 11-100 1-93 (123)
37 cd04049 C2_putative_Elicitor-r 99.9 9.1E-21 2E-25 128.7 13.0 106 10-123 1-112 (124)
38 cd08393 C2A_SLP-1_2 C2 domain 99.9 2.3E-21 5E-26 131.8 9.7 97 4-100 9-115 (125)
39 cd04050 C2B_Synaptotagmin-like 99.9 7.4E-21 1.6E-25 125.6 11.8 87 11-100 1-89 (105)
40 cd04043 C2_Munc13_fungal C2 do 99.9 2.3E-20 4.9E-25 127.0 14.3 117 10-162 1-122 (126)
41 cd08387 C2A_Synaptotagmin-8 C2 99.9 5E-21 1.1E-25 130.0 10.9 97 4-100 10-113 (124)
42 cd08394 C2A_Munc13 C2 domain f 99.9 1.3E-20 2.8E-25 126.8 12.6 88 9-100 1-88 (127)
43 cd04041 C2A_fungal C2 domain f 99.9 7.9E-21 1.7E-25 126.6 11.0 91 10-100 1-100 (111)
44 cd08385 C2A_Synaptotagmin-1-5- 99.9 9.1E-21 2E-25 128.7 11.0 96 4-99 10-112 (124)
45 cd08688 C2_KIAA0528-like C2 do 99.8 1.6E-20 3.4E-25 125.0 11.1 89 12-100 1-95 (110)
46 cd04010 C2B_RasA3 C2 domain se 99.8 1.4E-20 3.1E-25 131.1 11.0 89 11-100 1-110 (148)
47 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.2E-20 2.6E-25 128.7 10.0 96 4-99 9-114 (128)
48 cd08388 C2A_Synaptotagmin-4-11 99.8 4.5E-20 9.8E-25 126.0 12.3 96 4-99 10-114 (128)
49 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.9E-20 8.6E-25 125.7 11.6 98 3-100 9-114 (125)
50 cd08680 C2_Kibra C2 domain fou 99.8 2.1E-20 4.6E-25 126.6 10.2 98 2-99 6-113 (124)
51 cd04052 C2B_Tricalbin-like C2 99.8 4.1E-20 8.9E-25 123.2 11.4 100 27-163 10-111 (111)
52 cd04032 C2_Perforin C2 domain 99.8 3.1E-20 6.8E-25 126.1 10.8 94 6-99 24-119 (127)
53 cd04045 C2C_Tricalbin-like C2 99.8 1.2E-19 2.5E-24 122.6 13.4 91 10-100 1-93 (120)
54 cd04030 C2C_KIAA1228 C2 domain 99.8 4.5E-20 9.7E-25 125.7 11.4 97 4-100 10-117 (127)
55 cd04031 C2A_RIM1alpha C2 domai 99.8 4.2E-20 9.1E-25 125.5 10.9 93 4-96 10-112 (125)
56 cd08685 C2_RGS-like C2 domain 99.8 3.5E-20 7.5E-25 124.9 10.0 92 8-99 10-109 (119)
57 cd04051 C2_SRC2_like C2 domain 99.8 3.9E-20 8.4E-25 125.7 10.3 92 11-102 1-100 (125)
58 cd04011 C2B_Ferlin C2 domain s 99.8 9.8E-20 2.1E-24 121.3 12.0 89 9-100 3-96 (111)
59 cd08389 C2A_Synaptotagmin-14_1 99.8 4.1E-20 8.9E-25 125.5 10.2 97 3-100 9-113 (124)
60 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 1.1E-19 2.4E-24 128.7 11.3 94 7-100 24-127 (162)
61 cd04018 C2C_Ferlin C2 domain t 99.8 9.8E-20 2.1E-24 127.2 10.9 90 11-100 1-107 (151)
62 cd04009 C2B_Munc13-like C2 dom 99.8 1E-19 2.2E-24 125.1 10.0 97 4-100 10-119 (133)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 2.6E-19 5.6E-24 121.3 11.5 97 4-100 8-112 (123)
64 cd08406 C2B_Synaptotagmin-12 C 99.8 9.2E-20 2E-24 125.4 9.4 94 3-96 8-110 (136)
65 cd08521 C2A_SLP C2 domain firs 99.8 1.7E-19 3.8E-24 122.1 10.5 97 3-99 7-113 (123)
66 cd08407 C2B_Synaptotagmin-13 C 99.8 1.5E-19 3.1E-24 124.5 9.5 95 2-96 7-112 (138)
67 cd04037 C2E_Ferlin C2 domain f 99.8 5.1E-19 1.1E-23 120.1 11.6 89 11-99 1-93 (124)
68 cd08676 C2A_Munc13-like C2 dom 99.8 2.9E-19 6.4E-24 124.9 10.6 92 3-98 21-143 (153)
69 cd04021 C2_E3_ubiquitin_ligase 99.8 2.4E-18 5.2E-23 117.0 14.7 91 10-102 2-94 (125)
70 cd08691 C2_NEDL1-like C2 domai 99.8 2.2E-18 4.7E-23 118.6 14.4 91 11-103 2-110 (137)
71 PLN03200 cellulose synthase-in 99.8 1.4E-19 3E-24 163.4 10.7 119 5-162 1975-2101(2102)
72 cd04013 C2_SynGAP_like C2 doma 99.8 2.5E-18 5.3E-23 119.1 14.1 130 7-164 8-142 (146)
73 cd08690 C2_Freud-1 C2 domain f 99.8 3.3E-18 7.2E-23 119.6 14.7 89 12-100 4-110 (155)
74 KOG1028 Ca2+-dependent phospho 99.8 5.9E-19 1.3E-23 141.6 12.4 137 4-171 161-304 (421)
75 cd08384 C2B_Rabphilin_Doc2 C2 99.8 4.1E-19 8.8E-24 122.0 9.9 93 4-96 7-108 (133)
76 cd08402 C2B_Synaptotagmin-1 C2 99.8 4.7E-19 1E-23 122.2 9.7 95 3-97 8-111 (136)
77 cd08408 C2B_Synaptotagmin-14_1 99.8 6.1E-19 1.3E-23 121.8 9.8 97 2-98 7-113 (138)
78 cd04026 C2_PKC_alpha_gamma C2 99.8 8.6E-19 1.9E-23 120.1 10.4 90 10-99 13-110 (131)
79 cd08404 C2B_Synaptotagmin-4 C2 99.8 9.3E-19 2E-23 120.7 10.2 93 4-96 9-110 (136)
80 cd04040 C2D_Tricalbin-like C2 99.8 2E-18 4.4E-23 115.6 11.6 89 12-100 1-92 (115)
81 cd08675 C2B_RasGAP C2 domain s 99.8 1.1E-18 2.5E-23 120.3 10.4 89 12-100 1-109 (137)
82 PLN03008 Phospholipase D delta 99.8 2.7E-18 5.9E-23 144.2 13.5 122 8-167 12-183 (868)
83 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.2E-18 2.7E-23 120.1 9.6 94 4-97 9-111 (136)
84 cd08383 C2A_RasGAP C2 domain ( 99.8 5.5E-18 1.2E-22 113.7 12.3 79 12-93 2-84 (117)
85 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.7E-18 3.7E-23 119.1 9.8 95 2-96 6-109 (134)
86 cd08410 C2B_Synaptotagmin-17 C 99.8 1.7E-18 3.7E-23 119.2 9.8 94 3-96 7-109 (135)
87 cd08686 C2_ABR C2 domain in th 99.8 1.1E-17 2.3E-22 111.3 13.1 81 12-97 1-93 (118)
88 cd08692 C2B_Tac2-N C2 domain s 99.8 2.8E-18 6.1E-23 117.0 10.0 96 2-97 6-110 (135)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.8 5.8E-18 1.3E-22 114.7 10.5 98 4-102 9-116 (123)
90 KOG0696 Serine/threonine prote 99.8 1.9E-19 4.1E-24 140.8 3.2 92 9-100 179-278 (683)
91 cd00275 C2_PLC_like C2 domain 99.8 3.7E-17 8E-22 111.3 13.6 89 10-99 2-101 (128)
92 cd08409 C2B_Synaptotagmin-15 C 99.8 7.6E-18 1.6E-22 116.3 9.7 94 4-97 9-110 (137)
93 cd04048 C2A_Copine C2 domain f 99.8 1.1E-17 2.4E-22 112.9 10.3 86 15-100 5-103 (120)
94 cd00276 C2B_Synaptotagmin C2 d 99.7 1.1E-17 2.3E-22 114.8 9.6 93 4-96 8-109 (134)
95 cd04047 C2B_Copine C2 domain s 99.7 1.1E-16 2.4E-21 106.3 9.5 86 14-100 4-101 (110)
96 PF00168 C2: C2 domain; Inter 99.7 3.1E-16 6.8E-21 98.7 9.2 80 12-91 1-85 (85)
97 KOG2059 Ras GTPase-activating 99.6 3E-15 6.5E-20 122.7 9.0 129 9-170 4-134 (800)
98 KOG1011 Neurotransmitter relea 99.6 1.8E-15 3.9E-20 123.5 7.2 96 5-100 290-397 (1283)
99 smart00239 C2 Protein kinase C 99.6 5.1E-14 1.1E-18 90.8 10.5 90 11-100 1-95 (101)
100 cd08374 C2F_Ferlin C2 domain s 99.6 4.3E-14 9.3E-19 96.3 10.3 90 11-100 1-124 (133)
101 COG5038 Ca2+-dependent lipid-b 99.6 6.7E-14 1.4E-18 120.3 12.6 133 2-168 428-564 (1227)
102 cd00030 C2 C2 domain. The C2 d 99.5 3.3E-13 7.1E-18 86.6 10.2 87 12-98 1-90 (102)
103 PLN02270 phospholipase D alpha 99.5 9.5E-13 2.1E-17 111.1 13.2 122 8-167 6-154 (808)
104 PLN02223 phosphoinositide phos 99.5 1.9E-12 4.2E-17 105.3 14.1 91 10-100 409-511 (537)
105 KOG1028 Ca2+-dependent phospho 99.5 3.7E-13 8E-18 108.3 9.3 93 4-96 292-393 (421)
106 COG5038 Ca2+-dependent lipid-b 99.4 5.9E-13 1.3E-17 114.6 8.8 102 5-106 1035-1139(1227)
107 KOG1031 Predicted Ca2+-depende 99.4 1.7E-12 3.7E-17 105.3 8.8 92 9-100 2-99 (1169)
108 PLN02952 phosphoinositide phos 99.4 2E-11 4.3E-16 101.2 13.3 92 9-100 469-573 (599)
109 PLN02230 phosphoinositide phos 99.3 3.6E-11 7.7E-16 99.6 12.0 92 9-100 468-572 (598)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.3 2.6E-11 5.6E-16 78.5 8.5 87 12-103 1-92 (109)
111 PLN02222 phosphoinositide phos 99.3 1.1E-10 2.4E-15 96.5 13.2 92 9-100 451-555 (581)
112 KOG1264 Phospholipase C [Lipid 99.3 2E-11 4.3E-16 102.1 8.7 91 10-100 1065-1163(1267)
113 KOG0169 Phosphoinositide-speci 99.3 6.7E-11 1.5E-15 98.5 11.0 92 11-102 617-720 (746)
114 PLN02228 Phosphoinositide phos 99.2 2.1E-10 4.6E-15 94.6 13.3 91 10-100 431-535 (567)
115 KOG1328 Synaptic vesicle prote 99.1 1.2E-11 2.5E-16 102.4 1.2 95 5-99 942-1049(1103)
116 KOG1328 Synaptic vesicle prote 99.1 1.5E-11 3.3E-16 101.7 -0.2 96 4-99 108-272 (1103)
117 PLN02352 phospholipase D epsil 99.0 4.3E-09 9.4E-14 89.1 12.5 122 2-167 2-136 (758)
118 KOG1326 Membrane-associated pr 99.0 3.9E-10 8.4E-15 96.1 3.3 91 9-99 612-706 (1105)
119 KOG2059 Ras GTPase-activating 98.9 5.1E-09 1.1E-13 86.7 6.7 102 13-122 134-256 (800)
120 KOG0905 Phosphoinositide 3-kin 98.6 4.6E-08 9.9E-13 85.1 4.4 92 9-100 1523-1624(1639)
121 KOG1013 Synaptic vesicle prote 98.5 1.7E-07 3.6E-12 71.8 5.0 91 3-93 226-325 (362)
122 PLN02964 phosphatidylserine de 98.5 3.9E-07 8.5E-12 76.7 6.6 93 4-102 48-142 (644)
123 KOG1011 Neurotransmitter relea 98.5 9.8E-07 2.1E-11 73.3 8.4 94 10-103 1125-1229(1283)
124 KOG1013 Synaptic vesicle prote 98.3 1.2E-07 2.6E-12 72.6 0.3 96 6-101 89-194 (362)
125 cd08684 C2A_Tac2-N C2 domain f 98.1 4.2E-06 9.1E-11 52.5 3.8 86 13-100 2-95 (103)
126 KOG2060 Rab3 effector RIM1 and 98.0 2.1E-06 4.6E-11 66.9 1.3 94 7-100 266-367 (405)
127 KOG1327 Copine [Signal transdu 97.9 3E-05 6.5E-10 63.5 5.6 83 16-99 142-236 (529)
128 KOG1326 Membrane-associated pr 97.8 3.7E-06 8.1E-11 72.5 -1.0 91 7-97 203-304 (1105)
129 KOG1265 Phospholipase C [Lipid 97.7 6.5E-05 1.4E-09 64.5 5.4 88 8-102 701-799 (1189)
130 PF15627 CEP76-C2: CEP76 C2 do 97.7 0.0014 3E-08 45.9 10.5 95 6-100 5-118 (156)
131 cd08683 C2_C2cd3 C2 domain fou 97.6 0.0002 4.3E-09 48.3 6.0 89 12-100 1-133 (143)
132 KOG3837 Uncharacterized conser 97.4 0.00013 2.8E-09 57.9 3.1 90 11-100 368-476 (523)
133 cd08398 C2_PI3K_class_I_alpha 97.3 0.0044 9.5E-08 43.7 9.7 90 7-99 5-108 (158)
134 cd08380 C2_PI3K_like C2 domain 97.2 0.0025 5.4E-08 44.7 7.7 92 7-98 5-108 (156)
135 cd08687 C2_PKN-like C2 domain 97.2 0.0051 1.1E-07 38.9 8.1 67 28-99 7-74 (98)
136 cd08693 C2_PI3K_class_I_beta_d 97.2 0.0057 1.2E-07 43.8 9.4 92 7-99 5-122 (173)
137 PF12416 DUF3668: Cep120 prote 97.1 0.0071 1.5E-07 47.8 9.9 84 12-97 2-94 (340)
138 PF10358 NT-C2: N-terminal C2 97.1 0.046 1E-06 37.5 13.7 125 6-168 3-142 (143)
139 KOG1452 Predicted Rho GTPase-a 97.0 0.0013 2.8E-08 50.7 4.8 92 5-97 46-141 (442)
140 cd08397 C2_PI3K_class_III C2 d 97.0 0.0039 8.4E-08 44.0 6.6 70 28-97 28-107 (159)
141 cd04012 C2A_PI3K_class_II C2 d 96.6 0.025 5.3E-07 40.4 8.9 93 7-99 5-121 (171)
142 cd08399 C2_PI3K_class_I_gamma 96.4 0.072 1.6E-06 38.3 9.8 93 7-99 7-124 (178)
143 cd08695 C2_Dock-B C2 domains f 95.8 0.21 4.5E-06 36.3 10.0 55 41-95 53-112 (189)
144 cd08694 C2_Dock-A C2 domains f 95.3 0.21 4.5E-06 36.4 8.5 55 41-95 53-114 (196)
145 PF00792 PI3K_C2: Phosphoinosi 95.2 0.15 3.2E-06 35.1 7.4 55 44-98 23-86 (142)
146 PF14429 DOCK-C2: C2 domain in 95.2 0.1 2.3E-06 37.5 6.7 55 42-96 60-120 (184)
147 KOG1327 Copine [Signal transdu 95.0 0.083 1.8E-06 43.9 6.2 62 42-103 42-108 (529)
148 smart00142 PI3K_C2 Phosphoinos 95.0 0.22 4.8E-06 32.2 7.2 69 11-79 12-91 (100)
149 cd08679 C2_DOCK180_related C2 93.5 1.1 2.4E-05 32.1 8.9 53 43-96 55-115 (178)
150 PF15625 CC2D2AN-C2: CC2D2A N- 93.5 1.9 4.2E-05 30.6 10.9 70 29-99 36-108 (168)
151 cd08696 C2_Dock-C C2 domains f 92.0 0.86 1.9E-05 32.8 6.5 56 41-96 54-118 (179)
152 cd08697 C2_Dock-D C2 domains f 91.6 1.2 2.6E-05 32.2 7.0 56 41-96 56-123 (185)
153 PF11618 DUF3250: Protein of u 91.5 2.8 6E-05 27.5 8.1 66 33-100 2-76 (107)
154 PF07162 B9-C2: Ciliary basal 88.7 6.8 0.00015 27.8 13.7 79 12-95 4-102 (168)
155 PTZ00447 apical membrane antig 85.9 16 0.00035 29.2 10.4 82 12-98 60-143 (508)
156 KOG0694 Serine/threonine prote 77.1 0.71 1.5E-05 39.6 -0.2 68 29-97 27-95 (694)
157 KOG1329 Phospholipase D1 [Lipi 72.8 4.4 9.5E-05 36.1 3.4 71 30-100 138-210 (887)
158 KOG4269 Rac GTPase-activating 70.2 2.2 4.7E-05 38.0 1.1 86 6-96 755-855 (1112)
159 KOG0904 Phosphatidylinositol 3 67.4 61 0.0013 29.4 9.0 88 10-99 343-458 (1076)
160 KOG0906 Phosphatidylinositol 3 62.4 6.7 0.00015 33.9 2.4 68 29-96 46-123 (843)
161 PF06219 DUF1005: Protein of u 61.3 93 0.002 25.7 9.5 67 29-95 35-127 (460)
162 PF14909 SPATA6: Spermatogenes 60.6 53 0.0012 22.7 9.5 86 12-100 4-102 (140)
163 PF12416 DUF3668: Cep120 prote 56.0 1E+02 0.0023 24.6 8.4 90 8-102 190-298 (340)
164 KOG2419 Phosphatidylserine dec 55.3 0.75 1.6E-05 39.3 -4.1 57 8-65 278-339 (975)
165 PF10409 PTEN_C2: C2 domain of 48.2 81 0.0017 21.0 9.1 86 11-97 5-97 (134)
166 KOG3543 Ca2+-dependent activat 45.0 65 0.0014 28.2 5.5 81 11-93 342-425 (1218)
167 KOG4028 Uncharacterized conser 43.1 89 0.0019 21.4 5.0 23 70-92 75-97 (175)
168 PF01060 DUF290: Transthyretin 39.4 66 0.0014 19.6 3.7 26 68-93 11-36 (80)
169 PF14186 Aida_C2: Cytoskeletal 32.1 1.8E+02 0.0039 20.3 7.4 89 10-100 13-115 (147)
170 KOG4027 Uncharacterized conser 29.6 2.1E+02 0.0046 20.4 9.6 28 69-96 83-110 (187)
171 PF15084 DUF4550: Domain of un 24.1 79 0.0017 20.4 2.2 25 54-78 52-82 (99)
172 PF10622 Ehbp: Energy-converti 22.6 86 0.0019 19.0 2.0 29 68-96 30-60 (78)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=203.83 Aligned_cols=164 Identities=57% Similarity=0.924 Sum_probs=155.5
Q ss_pred ccccceEEEEEEEEeecCCCCCC-CCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCC
Q 048685 5 VESMLGLLKIRVKRGINLAVRDA-LSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSV 83 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~ 83 (172)
|..+.|.|+|+|++|.||..+|. +++||||++.+++++.+|+++.++.||+|||.|+|.+.+++..|+++|||+|.++.
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 34678999999999999999994 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEeCccchhhhccC--CccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEE
Q 048685 84 DDKMGEANIDIKPYIACLKMG--LENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWV 161 (172)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 161 (172)
|++||.+.|+|..++...... ....+.|+.+..+.|.+.+++.+++.+.+.+|++.++.++++++.++|+++++++|+
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~ 160 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI 160 (168)
T ss_pred ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence 999999999999999887776 347788999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCc
Q 048685 162 EVPGCKG 168 (172)
Q Consensus 162 ~~~~~~~ 168 (172)
+.++..+
T Consensus 161 ~~~~~~~ 167 (168)
T KOG1030|consen 161 KLPGSVG 167 (168)
T ss_pred cCccccc
Confidence 9998765
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=100.00 E-value=2.9e-31 Score=184.32 Aligned_cols=144 Identities=58% Similarity=0.966 Sum_probs=136.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeE
Q 048685 9 LGLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG 88 (172)
.|.|.|+|++|++|+..+.+.+||||++.++++.++|++++++.||.|||+|.|.+..+...|.|+|||++.+++|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 38899999999999988777899999999999999999999999999999999999988888999999999999999999
Q ss_pred EEEEeCccchhhhccC-CccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceee
Q 048685 89 EANIDIKPYIACLKMG-LENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECG 152 (172)
Q Consensus 89 ~~~i~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G 152 (172)
++.+++.++.....+. +...+.|.++..|.|...+++++|+.+.|.+|++.++++++|+++++|
T Consensus 81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 9999999999887776 677889999999999999999999999999999999999999999887
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.95 E-value=1.5e-26 Score=155.93 Aligned_cols=91 Identities=21% Similarity=0.372 Sum_probs=81.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCee
Q 048685 9 LGLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINS-NCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKM 87 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~l 87 (172)
.|+|.|+|++|++++..+.|++||||++.+++++++|+++.+ +.||+|||+|.|.+......|.|+|||.+.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 489999999999987766789999999999999999999876 7999999999999987667899999999999999999
Q ss_pred EEEEEeCcc-chh
Q 048685 88 GEANIDIKP-YIA 99 (172)
Q Consensus 88 G~~~i~l~~-l~~ 99 (172)
|++.+++.. +..
T Consensus 81 G~~~i~l~~~~~~ 93 (121)
T cd04016 81 AWTHITIPESVFN 93 (121)
T ss_pred EEEEEECchhccC
Confidence 999999964 443
No 4
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.93 E-value=1.1e-24 Score=150.06 Aligned_cols=124 Identities=32% Similarity=0.510 Sum_probs=105.4
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCC
Q 048685 5 VESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFS 82 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~ 82 (172)
.....|.|+|+|++|++|+..+ .|.+||||++.+++..++|++++++.||.|||+|.|.+..+ ...|.|+|||++.++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 4577899999999999999988 88999999999999999999999999999999999999765 467999999999998
Q ss_pred CCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEE
Q 048685 83 VDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDW 160 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 160 (172)
+|++||++.+++.++....... . + ....|+.++....|+|++++.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~-----~-------------------------~--~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKES-----K-------------------------G--PITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccC-----C-------------------------C--cEEEEeccccccceeEEEEEEe
Confidence 9999999999999987632220 0 1 1134666777889999999875
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.93 E-value=8.7e-25 Score=148.92 Aligned_cols=88 Identities=23% Similarity=0.468 Sum_probs=81.1
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeC------CCCcEEEEEEecCCCCCC
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRD------PNLPVHLTVYDKDTFSVD 84 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~------~~~~L~i~v~d~~~~~~d 84 (172)
++|+|++|+||+.++ .|.+||||++.+++.+++|++++++.||+|||+|.|.+.. ....|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999988 7899999999999999999999999999999999999876 356799999999999889
Q ss_pred CeeEEEEEeCccchh
Q 048685 85 DKMGEANIDIKPYIA 99 (172)
Q Consensus 85 ~~lG~~~i~l~~l~~ 99 (172)
++||++.++|.++..
T Consensus 81 ~~iG~~~i~l~~l~~ 95 (126)
T cd08682 81 KFLGQVSIPLNDLDE 95 (126)
T ss_pred ceeEEEEEEHHHhhc
Confidence 999999999999863
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.92 E-value=6.7e-24 Score=143.59 Aligned_cols=90 Identities=41% Similarity=0.609 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG 88 (172)
+|+|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||+|.|.+......|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4899999999999988 78999999999986 678999999999999999999998876778999999999998999999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
.+.+++.++..+
T Consensus 81 ~~~~~l~~l~~~ 92 (121)
T cd04042 81 SAFVDLSTLELN 92 (121)
T ss_pred EEEEEHHHcCCC
Confidence 999999998754
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.92 E-value=9.8e-24 Score=141.68 Aligned_cols=113 Identities=29% Similarity=0.435 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG 88 (172)
+|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+..+ ...|.|+|||++.+++|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999998 78999999999999999999999999999999999998866 678999999999998999999
Q ss_pred EEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEE
Q 048685 89 EANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWV 161 (172)
Q Consensus 89 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 161 (172)
++.++|.++..+. ..+.|++|... +|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~-------------------------------------~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQ-------------------------------------THSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCC-------------------------------------ceEEEEEccCC-CcEEEEEEEec
Confidence 9999999876532 23778888765 69999998874
No 8
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.92 E-value=5.5e-24 Score=143.79 Aligned_cols=113 Identities=31% Similarity=0.545 Sum_probs=100.1
Q ss_pred eEEEEEEEEeecCCCCCC-------CCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCC
Q 048685 10 GLLKIRVKRGINLAVRDA-------LSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTF 81 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~-------g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~ 81 (172)
|.|.|+|++|++|+..+. +.+||||++.+++..++|++++++.||.|+|+|.|.+... ...|.|+|||.+..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998772 5799999999999999999999999999999999998754 67899999999988
Q ss_pred CCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEE
Q 048685 82 SVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDW 160 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 160 (172)
++++||.+.+++.++..+.. .+.|++|.+..+|+|+++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~-------------------------------------~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGF-------------------------------------IDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCc-------------------------------------cceEEECcCCCCceEEEEEeC
Confidence 88999999999999865311 267999998889999999997
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.91 E-value=7.9e-24 Score=142.54 Aligned_cols=90 Identities=26% Similarity=0.459 Sum_probs=81.1
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecC-CCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCe
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINS-NCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~ 86 (172)
|.|.|+|++|++|+..+ .+.+||||++.+++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 68999999999999988 889999999999998899998765 69999999999999865 567999999998875 899
Q ss_pred eEEEEEeCccchhh
Q 048685 87 MGEANIDIKPYIAC 100 (172)
Q Consensus 87 lG~~~i~l~~l~~~ 100 (172)
||++.+++.++...
T Consensus 80 iG~~~~~l~~~~~~ 93 (118)
T cd08681 80 IGDTEVDLSPALKE 93 (118)
T ss_pred eEEEEEecHHHhhc
Confidence 99999999998664
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.91 E-value=1e-23 Score=143.00 Aligned_cols=89 Identities=25% Similarity=0.429 Sum_probs=82.3
Q ss_pred EEEEEEEeec---CCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCC-----
Q 048685 12 LKIRVKRGIN---LAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFS----- 82 (172)
Q Consensus 12 L~V~v~~a~~---L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~----- 82 (172)
|.|+|++|+| |+.++ .|.+||||++.+++++.+|+++.++.||+|||+|.|.+..+...|.|+|||.+.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 78778 88999999999999999999999999999999999999877778999999998873
Q ss_pred -CCCeeEEEEEeCccchhh
Q 048685 83 -VDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 83 -~d~~lG~~~i~l~~l~~~ 100 (172)
+|++||++.++|..+..+
T Consensus 82 ~~dd~lG~~~i~l~~l~~~ 100 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDD 100 (126)
T ss_pred CCCceEEEEEEEHHHccCC
Confidence 899999999999998764
No 11
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.91 E-value=3.9e-23 Score=140.81 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC--CEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEE
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMG--KQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGE 89 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~--~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~ 89 (172)
|.|+|++|+||+. ..|.+||||+++++ ..+++|+++.++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 6799999999988 66899999999997 36789999999999999999999997657789999999999989999999
Q ss_pred EEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEEEcC
Q 048685 90 ANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWVEVP 164 (172)
Q Consensus 90 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~~ 164 (172)
+.+++.++...... ..++.+.+.... .....|+|+++++|.+.+
T Consensus 80 ~~i~l~~l~~~~~~--------~~~~~L~~~~~~-----------------------~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 80 AIVPFDELRKNPSG--------RQIFPLQGRPYE-----------------------GDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEeHHHhccCCce--------eEEEEecCCCCC-----------------------CCCcceEEEEEEEEeccc
Confidence 99999998765222 233333322110 123689999999998876
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=2.4e-23 Score=142.04 Aligned_cols=88 Identities=28% Similarity=0.454 Sum_probs=80.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecCCCC-CC
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKDTFS-VD 84 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~~~~-~d 84 (172)
.|+|+|++|++|+..+ .+.+||||++++++++++|+++.++.||.|||.|.|.+..+ ...|.|+|||.+.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999988 78999999999999999999999999999999999998754 246999999998886 78
Q ss_pred CeeEEEEEeCccch
Q 048685 85 DKMGEANIDIKPYI 98 (172)
Q Consensus 85 ~~lG~~~i~l~~l~ 98 (172)
++||++.+++.++.
T Consensus 81 ~~lG~v~i~l~~l~ 94 (127)
T cd04022 81 SFLGRVRISGTSFV 94 (127)
T ss_pred CeeeEEEEcHHHcC
Confidence 99999999999986
No 13
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.91 E-value=4.4e-23 Score=140.69 Aligned_cols=90 Identities=36% Similarity=0.632 Sum_probs=82.9
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeC-CCCcEEEEEEecCCCCCCC
Q 048685 10 GLLKIRVKRGINLAVRD---ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRD-PNLPVHLTVYDKDTFSVDD 85 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~---~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~-~~~~L~i~v~d~~~~~~d~ 85 (172)
|.|+|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|+|+|.|.+.. ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 68999999999999876 4689999999999999999999999999999999999986 3678999999999988899
Q ss_pred eeEEEEEeCccchh
Q 048685 86 KMGEANIDIKPYIA 99 (172)
Q Consensus 86 ~lG~~~i~l~~l~~ 99 (172)
+||++.+++.++..
T Consensus 81 ~lG~~~i~l~~~~~ 94 (128)
T cd04024 81 YLGEFDIALEEVFA 94 (128)
T ss_pred cceEEEEEHHHhhc
Confidence 99999999999874
No 14
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.91 E-value=3.8e-23 Score=140.22 Aligned_cols=93 Identities=28% Similarity=0.490 Sum_probs=84.1
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC--EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCC
Q 048685 9 LGLLKIRVKRGINLAVRD--ALSSDPYVVITMGK--QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVD 84 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~~--~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d 84 (172)
.|.|.|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||.+..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 488999999999999765 46789999999987 78999999999999999999999885578899999999998899
Q ss_pred CeeEEEEEeCccchhhh
Q 048685 85 DKMGEANIDIKPYIACL 101 (172)
Q Consensus 85 ~~lG~~~i~l~~l~~~~ 101 (172)
++||.+.+++.++..+.
T Consensus 81 ~~iG~~~~~l~~l~~~~ 97 (124)
T cd04044 81 KLIGTAEFDLSSLLQNP 97 (124)
T ss_pred ceeEEEEEEHHHhccCc
Confidence 99999999999998753
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.90 E-value=4.6e-23 Score=139.09 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=96.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCe
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~ 86 (172)
|.|+|++|++|+..+ .+.+||||++.++ ..+++|+++.++.||.|||+|.|.+... ...|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999988 7899999999986 3678999999999999999999998765 45699999999988 8999
Q ss_pred eEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEE
Q 048685 87 MGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDW 160 (172)
Q Consensus 87 lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 160 (172)
||++.+++.++..+. ..+.|++|....+|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~-------------------------------------~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGE-------------------------------------KVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCC-------------------------------------cEEEEEECCCCCCceEEEEEEe
Confidence 999999999886531 1277888888888999998864
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.90 E-value=1.3e-22 Score=137.18 Aligned_cols=89 Identities=20% Similarity=0.369 Sum_probs=80.3
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeE
Q 048685 12 LKIRVKRGINLAVRD--ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 12 L~V~v~~a~~L~~~~--~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG 88 (172)
|.|+|++|+||+..+ .|.+||||++.+++. .++|++++++.||.|||+|.|.+......|.+.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999874 578999999999864 68999999999999999999999866678999999999999999999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
.+.++++++...
T Consensus 82 ~~~i~l~~l~~~ 93 (121)
T cd08401 82 KVAIKKEDLHKY 93 (121)
T ss_pred EEEEEHHHccCC
Confidence 999999988653
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=1.6e-22 Score=141.44 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecC-CCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeE
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINS-NCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG 88 (172)
|.|+|++|++|++++ .|.+||||++.++++.++|+++.+ +.||+|||+|.|.+..+ ...|.|+|||.+..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 799999999999999 889999999999999999999977 69999999999999765 457999999999888899999
Q ss_pred EEEEeCccchh
Q 048685 89 EANIDIKPYIA 99 (172)
Q Consensus 89 ~~~i~l~~l~~ 99 (172)
++.++|.++..
T Consensus 82 ~v~i~L~~l~~ 92 (150)
T cd04019 82 RAVIPLNDIER 92 (150)
T ss_pred EEEEEHHHCcc
Confidence 99999999865
No 18
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.90 E-value=3e-22 Score=134.94 Aligned_cols=90 Identities=32% Similarity=0.544 Sum_probs=83.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeE
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG 88 (172)
|.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 68999999999999988 78899999999998889999999999999999999998766778999999999888999999
Q ss_pred EEEEeCccchh
Q 048685 89 EANIDIKPYIA 99 (172)
Q Consensus 89 ~~~i~l~~l~~ 99 (172)
++.+++.++..
T Consensus 81 ~~~~~l~~~~~ 91 (119)
T cd08377 81 KVAIPLLSIKN 91 (119)
T ss_pred EEEEEHHHCCC
Confidence 99999988754
No 19
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=5e-22 Score=136.44 Aligned_cols=90 Identities=27% Similarity=0.520 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCC
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQ-------KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFS 82 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~ 82 (172)
.|+|+|++|++|+..+ .+.+||||++.+.+. .++|++++++.||.|||+|.|.+......|.++|||.+.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 3899999999999988 789999999998643 57999999999999999999998766778999999999999
Q ss_pred CCCeeEEEEEeCccchhh
Q 048685 83 VDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~ 100 (172)
++++||++.+++.++...
T Consensus 81 ~~~~iG~~~i~l~~l~~~ 98 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTE 98 (133)
T ss_pred CCCeeEEEEEEHHHCCCc
Confidence 999999999999998764
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.88 E-value=2.1e-22 Score=134.14 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=83.6
Q ss_pred cccccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECC----EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRDALSSDPYVVITMGK----QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~----~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
|-.+....+.|+|+|++|++|+ .+ |.+||||++++.. .+.+|++.++++||+|||+|.|.+... +..|.++
T Consensus 6 sL~Y~~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 6 SLSYDKQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred EEEEcCcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 3456777899999999999998 33 5699999999862 577999999999999999999998754 4679999
Q ss_pred EEecCCCCCCCeeEEEEEeCccchh
Q 048685 75 VYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
|||.+.++++++||++.+++.++..
T Consensus 84 V~d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 84 LRCCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred EEeCCCCCCCceEEEEEEccccccC
Confidence 9999999999999999999998743
No 21
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.88 E-value=9.2e-22 Score=133.11 Aligned_cols=88 Identities=31% Similarity=0.499 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEE
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGE 89 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~ 89 (172)
|.|+|++|++|++.+ .|.+||||++.+++. ..+|+++.++.||.|||.|.|.+......|.|+|||.+.+++|+++|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 889999999999865 469999999999999999999987666789999999999999999999
Q ss_pred EEEeCccchh
Q 048685 90 ANIDIKPYIA 99 (172)
Q Consensus 90 ~~i~l~~l~~ 99 (172)
+.+++..+..
T Consensus 82 ~~~~~~~~~~ 91 (121)
T cd04054 82 VSLTREVISA 91 (121)
T ss_pred EEEcHHHhcc
Confidence 9999887753
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=5e-22 Score=134.37 Aligned_cols=84 Identities=29% Similarity=0.451 Sum_probs=77.4
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeEEE
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMGEA 90 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG~~ 90 (172)
|.|+|++|+||+.. .+||||++.+++...+|++++++.||.|||+|.|.+..+ ...|.++|||.+.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999887 789999999999999999999999999999999998764 56799999999987 78999999
Q ss_pred EEeCccchh
Q 048685 91 NIDIKPYIA 99 (172)
Q Consensus 91 ~i~l~~l~~ 99 (172)
.++++++..
T Consensus 78 ~i~l~~l~~ 86 (121)
T cd08378 78 CFDLSEVPT 86 (121)
T ss_pred EEEhHhCcC
Confidence 999999865
No 23
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.88 E-value=2.4e-21 Score=131.92 Aligned_cols=89 Identities=19% Similarity=0.430 Sum_probs=82.1
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCe
Q 048685 8 MLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~ 86 (172)
|..+|+|+|++|++|...+ .|.+||||++.++++.++|++++++.||.|||.|.|.+..+...|.|+|||++.. .|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 4578999999999999988 7899999999999999999999999999999999999887778899999999887 5899
Q ss_pred eEEEEEeCccc
Q 048685 87 MGEANIDIKPY 97 (172)
Q Consensus 87 lG~~~i~l~~l 97 (172)
||.+.+++..+
T Consensus 80 lG~~~~~l~~~ 90 (126)
T cd04046 80 LGQATLSADPN 90 (126)
T ss_pred eEEEEEecccC
Confidence 99999999865
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.88 E-value=1.8e-21 Score=137.37 Aligned_cols=92 Identities=27% Similarity=0.468 Sum_probs=80.9
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------CCCCCcEEEEEECCEE-EEeeeecCCCCCe
Q 048685 8 MLGLLKIRVKRGINLAVRD-------------------------------ALSSDPYVVITMGKQK-MKTHVINSNCNPV 55 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~-------------------------------~g~~dpyv~v~~~~~~-~~T~~~~~~~~P~ 55 (172)
..|.|.|+|++|++|+.++ .|.+||||++++++.+ .+|+++.++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 4689999999999999865 3468999999999754 6999999999999
Q ss_pred EeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 56 WNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 56 w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|||+|.|.+..+...|.|+|||++.++ +++||++.++++++..+
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG 128 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC
Confidence 999999998877778999999999875 68999999999998653
No 25
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.88 E-value=9e-22 Score=130.48 Aligned_cols=92 Identities=24% Similarity=0.486 Sum_probs=82.8
Q ss_pred eEEEEEEEEeecCCCCC-C----CCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEEEEEecCCCC
Q 048685 10 GLLKIRVKRGINLAVRD-A----LSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHLTVYDKDTFS 82 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~----g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i~v~d~~~~~ 82 (172)
|+|.|+|++|++|++.+ . +.+||||++++++..++|++++++.||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999876 1 3589999999999999999999999999999999998754 346899999999999
Q ss_pred CCCeeEEEEEeCccchhhh
Q 048685 83 VDDKMGEANIDIKPYIACL 101 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~ 101 (172)
+|++||++.++|.++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999998763
No 26
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.88 E-value=2.2e-21 Score=131.60 Aligned_cols=90 Identities=27% Similarity=0.475 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG 88 (172)
+|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999988 77899999999999999999999999999999999998865 467999999999998999999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
++.++|.++...
T Consensus 81 ~~~~~l~~l~~~ 92 (123)
T cd04025 81 KVVFSIQTLQQA 92 (123)
T ss_pred EEEEEHHHcccC
Confidence 999999988653
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.88 E-value=3.7e-21 Score=132.04 Aligned_cols=116 Identities=24% Similarity=0.378 Sum_probs=98.5
Q ss_pred ceEEEEEEEEeecCCCCCC-----------CCCCcEEEEEECCEE-EEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEE
Q 048685 9 LGLLKIRVKRGINLAVRDA-----------LSSDPYVVITMGKQK-MKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVY 76 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~-----------g~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~ 76 (172)
.|.|+|+|++|++|+..+. +.+||||++.++++. .+|+++.++.||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 5889999999999998773 578999999999755 68999999999999999999997 4578999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEE
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEI 156 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l 156 (172)
|.+.+++++++|++.++|.++..... ...+.|+.|. +.|+|++
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~-----------------------------------~~~~~w~~L~--~~G~l~l 124 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGS-----------------------------------GSFDLWVDLE--PQGKLHV 124 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCC-----------------------------------CcccEEEEcc--CCcEEEE
Confidence 99988889999999999998876300 1126788887 6799999
Q ss_pred EEEEEE
Q 048685 157 QLDWVE 162 (172)
Q Consensus 157 ~l~~~~ 162 (172)
+++|..
T Consensus 125 ~~~~~~ 130 (132)
T cd04014 125 KIELKG 130 (132)
T ss_pred EEEEec
Confidence 999864
No 28
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.88 E-value=3.9e-21 Score=132.41 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=94.4
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC----------CCcEEEEEEec
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP----------NLPVHLTVYDK 78 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~----------~~~L~i~v~d~ 78 (172)
+.|+|+|++|++|+.++ .|.+||||++.+++.+++|++++++.||.|||.|.|.+... ...|.|+|||.
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999988 88999999999999999999999999999999999975321 13589999999
Q ss_pred CCCCCCCeeEEEEE-eCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEecc--ceeeeEE
Q 048685 79 DTFSVDDKMGEANI-DIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNN--VECGEVE 155 (172)
Q Consensus 79 ~~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~l~ 155 (172)
+..++|++||++.+ ++..+...... .....|++|.. ...|+|.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~----------------------------------~~~~~W~~L~~~~~~~Geil 126 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDF----------------------------------PPKLQWFPIYKGGQSAGELL 126 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCC----------------------------------CCCceEEEeecCCCchhhee
Confidence 99999999999987 43333221000 01244555542 3689999
Q ss_pred EEEEEEEc
Q 048685 156 IQLDWVEV 163 (172)
Q Consensus 156 l~l~~~~~ 163 (172)
++++++++
T Consensus 127 ~~~~~~~~ 134 (135)
T cd04017 127 AAFELIEV 134 (135)
T ss_pred EEeEEEEe
Confidence 99999875
No 29
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.88 E-value=4e-21 Score=130.83 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=75.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCC-CcEEEEEEecCCCCCCCee
Q 048685 10 GLLKIRVKRGINLAVRDALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPN-LPVHLTVYDKDTFSVDDKM 87 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~-~~L~i~v~d~~~~~~d~~l 87 (172)
..|+|+|++|+||++. +.+||||++.+++. ..+|++ +++.||.|||+|.|.+..++ ..+.|.|||.+.+++|++|
T Consensus 4 ~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 4 RSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred eEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 3699999999999875 47899999999874 468887 46899999999999876553 5789999999999999999
Q ss_pred EEEEEeCccchhh
Q 048685 88 GEANIDIKPYIAC 100 (172)
Q Consensus 88 G~~~i~l~~l~~~ 100 (172)
|++.++|..+..+
T Consensus 81 G~v~i~l~~l~~~ 93 (126)
T cd08400 81 AEVTVQLSKLQNG 93 (126)
T ss_pred EEEEEEHhHccCC
Confidence 9999999988653
No 30
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=1.2e-21 Score=131.82 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=78.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEE-C----C--EEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecC
Q 048685 11 LLKIRVKRGINLAVRDALSSDPYVVITM-G----K--QKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKD 79 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~~g~~dpyv~v~~-~----~--~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~ 79 (172)
+|+|+|++|++|+..+.|.+||||++++ + . ++++|+++.++.||+|||+|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4899999999999887889999999997 3 2 457899999999999999999999753 235899999999
Q ss_pred CCCCCCeeEEEEEeCccchhh
Q 048685 80 TFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~ 100 (172)
..+++++||++.+++.++..+
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~ 101 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQA 101 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCC
Confidence 888899999999999999765
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.87 E-value=9.9e-22 Score=133.09 Aligned_cols=92 Identities=25% Similarity=0.308 Sum_probs=81.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEe-eC---CCCcEEEEEEecC
Q 048685 9 LGLLKIRVKRGINLAVRDALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPI-RD---PNLPVHLTVYDKD 79 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v-~~---~~~~L~i~v~d~~ 79 (172)
.+.|.|.|++|++|++.+.+.+||||++++. ..+.+|++++++.||.|||+|.|.+ .. ....|.++|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 6889999999999999886789999999986 3578999999999999999999997 32 2467999999999
Q ss_pred CCCCCCeeEEEEEeCccchhh
Q 048685 80 TFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.++++++||++.++|.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 999999999999999998753
No 32
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.87 E-value=1.8e-21 Score=135.03 Aligned_cols=91 Identities=22% Similarity=0.328 Sum_probs=80.7
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEE-ecCC
Q 048685 9 LGLLKIRVKRGINLAVRD--ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVY-DKDT 80 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~-d~~~ 80 (172)
.+.|.|+|++|+||++.+ .|.+||||++++. + .+.+|++++++.||+|||+|.|.+...+..|.|+|| |.+.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 588999999999999864 6789999999984 2 378999999999999999999999855778999999 6788
Q ss_pred CCCCCeeEEEEEeCccchh
Q 048685 81 FSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~ 99 (172)
++++++||++.|+|+.+..
T Consensus 108 ~~~~~~iG~~~i~L~~l~~ 126 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDL 126 (146)
T ss_pred CCCCceEEEEEEEcccccC
Confidence 8889999999999999843
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.87 E-value=1.5e-21 Score=132.80 Aligned_cols=98 Identities=29% Similarity=0.377 Sum_probs=85.7
Q ss_pred ccccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD--ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVH 72 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~ 72 (172)
-.+....+.|.|+|++|+||++.+ .+.+||||++++. ..+.+|++++++.||.|||+|.|.+... +..|.
T Consensus 8 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~ 87 (125)
T cd04029 8 LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQ 87 (125)
T ss_pred EEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEE
Confidence 356778899999999999999886 4789999999984 2367999999999999999999998753 45799
Q ss_pred EEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 73 LTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 73 i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|+|||.+.++++++||++.++|.++...
T Consensus 88 ~~V~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 88 LSVWHYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred EEEEECCCCCCCcEEEEEEEeCCccccc
Confidence 9999999999999999999999988654
No 34
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=8.6e-21 Score=129.36 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=97.2
Q ss_pred EEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCCCCCeeEEEEE
Q 048685 16 VKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFSVDDKMGEANI 92 (172)
Q Consensus 16 v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~~d~~lG~~~i 92 (172)
|++|++|+. ..+.+||||++++++.+++|++++++.||.|||+|.|.+..+ ...|.++|||++..++|++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 689999998 567899999999999999999999999999999999998753 5679999999999989999999999
Q ss_pred eCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccc----eeeeEEEEEEEEEcCCCCc
Q 048685 93 DIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNV----ECGEVEIQLDWVEVPGCKG 168 (172)
Q Consensus 93 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~~~~~~~ 168 (172)
++.++..+... ..|++|.+. ..|+|+++++|.|+.+..+
T Consensus 81 ~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 81 SLQDLVSEGLL-------------------------------------EVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EhhHcccCCce-------------------------------------EEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 99998754221 334444322 3689999999999988765
Q ss_pred e
Q 048685 169 L 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 124 ~ 124 (127)
T cd08373 124 G 124 (127)
T ss_pred C
Confidence 4
No 35
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.86 E-value=1.1e-20 Score=128.89 Aligned_cols=88 Identities=31% Similarity=0.533 Sum_probs=79.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCC--------
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTF-------- 81 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~-------- 81 (172)
.|+|+|++|++|+..+ .+.+||||++.+++..++|+++.++.||.|+|+|.|.+..+...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 6899999999999988 7889999999999889999999999999999999999876667899999998853
Q ss_pred ---CCCCeeEEEEEeCccch
Q 048685 82 ---SVDDKMGEANIDIKPYI 98 (172)
Q Consensus 82 ---~~d~~lG~~~i~l~~l~ 98 (172)
+.+++||.+.+++.++.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred ccccCCCcceEEEEEhHHcc
Confidence 46899999999998763
No 36
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.86 E-value=1.3e-20 Score=127.89 Aligned_cols=89 Identities=25% Similarity=0.400 Sum_probs=80.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-CEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCC--CCe
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMG-KQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSV--DDK 86 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~--d~~ 86 (172)
.|+|+|++|++|+..+ .+.+||||+++++ ...++|++++++.||.|||+|.|.+.. ...|.++|||.+.+++ |++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 3789999999999988 7899999999996 678899999999999999999999975 7789999999998865 579
Q ss_pred eEEEEEeCccchhh
Q 048685 87 MGEANIDIKPYIAC 100 (172)
Q Consensus 87 lG~~~i~l~~l~~~ 100 (172)
||++.+++.++...
T Consensus 80 lG~~~i~l~~l~~~ 93 (123)
T cd08382 80 LGCVRIRANAVLPL 93 (123)
T ss_pred EeEEEEEHHHcccc
Confidence 99999999999764
No 37
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.86 E-value=9.1e-21 Score=128.71 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=91.0
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecC-CCCCeEeeEEEEEeeCC----CCcEEEEEEecCCCCC
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINS-NCNPVWNCDLTLPIRDP----NLPVHLTVYDKDTFSV 83 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~~~~~ 83 (172)
|.|.|+|++|++|+..+ .+.+||||++.+++..++|++..+ +.||.|||+|.|.+..+ ...|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 68999999999999888 789999999999988899999885 89999999999999876 4679999999999989
Q ss_pred CCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcc
Q 048685 84 DDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRIN 123 (172)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (172)
+++||++.+++.++..++.. ..|+.+.|..++
T Consensus 81 d~~iG~~~i~l~~l~~~~~~--------~~~~~l~p~~~~ 112 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVE--------PGTAELVPAKYN 112 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCC--------cCceEeeccceE
Confidence 99999999999999875333 445566665443
No 38
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.86 E-value=2.3e-21 Score=131.84 Aligned_cols=97 Identities=27% Similarity=0.401 Sum_probs=84.7
Q ss_pred cccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-A-LSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~-g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
.+....+.|.|+|++|+||++++ . |.+||||++++. ..+++|++++++.||+|||+|.|.+... ...|.+
T Consensus 9 ~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~ 88 (125)
T cd08393 9 DYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNL 88 (125)
T ss_pred EEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEE
Confidence 45666789999999999999998 4 789999999984 2457999999999999999999998643 467999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+|||.+.++++++||++.++|.++...
T Consensus 89 ~V~d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 89 SVWHRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred EEEeCCCCCCCcEeEEEEEecCccccC
Confidence 999999999999999999999988543
No 39
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.86 E-value=7.4e-21 Score=125.58 Aligned_cols=87 Identities=28% Similarity=0.510 Sum_probs=79.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG 88 (172)
.|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.||.|||+|.|.+..+ ...|.|+|||.+. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3899999999999988 78999999999999999999999999999999999999876 5679999999875 78999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
++.++|.++...
T Consensus 78 ~~~i~l~~l~~~ 89 (105)
T cd04050 78 SLTLPLSELLKE 89 (105)
T ss_pred EEEEEHHHhhcc
Confidence 999999998764
No 40
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.86 E-value=2.3e-20 Score=127.04 Aligned_cols=117 Identities=26% Similarity=0.400 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCC
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGK---QKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVD 84 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d 84 (172)
+.|+|+|++|++|+..+ .+.+||||++.+.+ ..++|++++++.||.|||+|.|.+..+ ...|.|+|||++.++++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999988 78999999999763 467999999999999999999999875 56799999999998889
Q ss_pred CeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEEE
Q 048685 85 DKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWVE 162 (172)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~ 162 (172)
++||++.++|..+..... | ...+.|++|.. .|+|++++.+.-
T Consensus 81 ~~iG~~~i~l~~~~~~~~---------------------------------~-~~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDD---------------------------------G-LPREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCC---------------------------------C-CCceEEEEcCC--CCeEEEEEEEee
Confidence 999999999987644210 0 11367888874 799999887753
No 41
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=5e-21 Score=129.97 Aligned_cols=97 Identities=19% Similarity=0.385 Sum_probs=86.5
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVY 76 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~ 76 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|+|+|.|.+... +..|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 56677899999999999999988 7899999999984 4568999999999999999999998754 457999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchhh
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|.+.++++++||++.+++.++..+
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCC
Confidence 999998999999999999999754
No 42
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=1.3e-20 Score=126.81 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=78.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeE
Q 048685 9 LGLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG 88 (172)
.+.|.|+|++|++|+..+ ..||||++.+++.+.+|++.++ .||.|||.|.|.+...+..|.|+|||++.+ .|+++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 368999999999997654 4589999999999999999988 499999999999987777799999999866 899999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
++.|+|.++..+
T Consensus 77 ~v~i~L~~v~~~ 88 (127)
T cd08394 77 TVWIPLSTIRQS 88 (127)
T ss_pred EEEEEhHHcccC
Confidence 999999998865
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.86 E-value=7.9e-21 Score=126.65 Aligned_cols=91 Identities=31% Similarity=0.561 Sum_probs=81.6
Q ss_pred eEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecCC
Q 048685 10 GLLKIRVKRGINLAVRD-A-LSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKDT 80 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~-g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~~ 80 (172)
|+|+|+|++|++|+..+ . +.+||||++++. +..++|++++++.||.|||.|.|.+... ...|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 68999999999999988 6 899999999984 3568999999999999999999988653 3579999999999
Q ss_pred CCCCCeeEEEEEeCccchhh
Q 048685 81 FSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~ 100 (172)
+++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999753
No 44
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.85 E-value=9.1e-21 Score=128.68 Aligned_cols=96 Identities=28% Similarity=0.405 Sum_probs=84.7
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVY 76 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~ 76 (172)
.+....+.|.|+|++|+||+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 10 DYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred EEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 45567789999999999999988 7889999999985 3567999999999999999999998753 457999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchh
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
|.+.++++++||++.+++.++..
T Consensus 90 d~d~~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 90 DFDRFSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred eCCCCCCCceeEEEEEecCcccC
Confidence 99999899999999999998755
No 45
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.85 E-value=1.6e-20 Score=125.01 Aligned_cols=89 Identities=33% Similarity=0.605 Sum_probs=81.4
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeecCCCCCeE-eeEEEEEeeCC---CCcEEEEEEecCCCCCCC
Q 048685 12 LKIRVKRGINLAVRD--ALSSDPYVVITMGKQKMKTHVINSNCNPVW-NCDLTLPIRDP---NLPVHLTVYDKDTFSVDD 85 (172)
Q Consensus 12 L~V~v~~a~~L~~~~--~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w-~e~f~f~v~~~---~~~L~i~v~d~~~~~~d~ 85 (172)
|.|+|++|++|+.++ .+.+||||++++++..++|++++++.||.| ||+|.|.+... +..|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 689999999999887 578999999999999999999999999999 99999998764 367999999999999999
Q ss_pred eeEEEEEeCccchhh
Q 048685 86 KMGEANIDIKPYIAC 100 (172)
Q Consensus 86 ~lG~~~i~l~~l~~~ 100 (172)
+||++.+++.++...
T Consensus 81 ~iG~~~~~l~~l~~~ 95 (110)
T cd08688 81 AIGKVYIDLNPLLLK 95 (110)
T ss_pred ceEEEEEeHHHhccc
Confidence 999999999999773
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.85 E-value=1.4e-20 Score=131.06 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=77.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeC-----------C-----CC
Q 048685 11 LLKIRVKRGINLAVRDALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRD-----------P-----NL 69 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~-----------~-----~~ 69 (172)
.|.|+|++|++|+. ..|.+||||++++.. .+.+|++++++.||+|||+|.|.+.. + ..
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999998 458899999999964 57899999999999999999999851 1 24
Q ss_pred cEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 70 PVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 70 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.|.|.|||.+.+++|++||++.|++..+...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 5899999999888999999999999998764
No 47
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.85 E-value=1.2e-20 Score=128.73 Aligned_cols=96 Identities=25% Similarity=0.307 Sum_probs=84.8
Q ss_pred cccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-A-LSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~-g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
.+....+.|.|+|++|+||++++ . |.+||||++++. ..+.+|++++++.||+|||+|.|.+... +..|.+
T Consensus 9 ~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 9 HYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred EEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 45667789999999999999988 4 899999999985 2477999999999999999999998653 467999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccchh
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
.|||.+.++++++||++.|+|.++.-
T Consensus 89 ~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 89 SVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred EEEeCCCCcCcceEEEEEEEcCCccc
Confidence 99999999999999999999998854
No 48
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.84 E-value=4.5e-20 Score=125.96 Aligned_cols=96 Identities=28% Similarity=0.370 Sum_probs=82.6
Q ss_pred cccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEE-eeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-A-LSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLP-IRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~-g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-v~~~---~~~L~i~ 74 (172)
.+....+.|+|+|++|+||+..+ . +.+||||++.+. ..+.+|++++++.||.|||+|.|. +... +..|.++
T Consensus 10 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~ 89 (128)
T cd08388 10 RYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFA 89 (128)
T ss_pred EEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEE
Confidence 45667789999999999999988 4 889999999985 456799999999999999999994 4322 3469999
Q ss_pred EEecCCCCCCCeeEEEEEeCccchh
Q 048685 75 VYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
|||++.++++++||++.++|.++.-
T Consensus 90 V~d~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 90 VLSFDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred EEEcCCCCCCceeEEEEEeccccCC
Confidence 9999999999999999999998854
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=3.9e-20 Score=125.68 Aligned_cols=98 Identities=28% Similarity=0.390 Sum_probs=84.7
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLT 74 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~ 74 (172)
-.+....+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.++
T Consensus 9 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~ 88 (125)
T cd08386 9 VSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQ 88 (125)
T ss_pred EEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEE
Confidence 345667789999999999999988 7889999999983 4678999999999999999999975322 3569999
Q ss_pred EEecCCCCCCCeeEEEEEeCccchhh
Q 048685 75 VYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|||.+.++++++||++.+++.++...
T Consensus 89 v~d~d~~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 89 VLDYDRFSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred EEeCCCCcCCcEeeEEEEecccccCC
Confidence 99999998999999999999998653
No 50
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.84 E-value=2.1e-20 Score=126.61 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=86.1
Q ss_pred cccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C----EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K----QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPV 71 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~----~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L 71 (172)
|-.+....+.|.|+|++|+||++.+ .+.+||||++++. . .+++|++++++.||+|||+|.|.+... +..|
T Consensus 6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L 85 (124)
T cd08680 6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL 85 (124)
T ss_pred EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence 3356677889999999999999988 7789999999974 2 478999999999999999999998753 5679
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCccchh
Q 048685 72 HLTVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 72 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
.++||+.+.++++++||.+.|+|.++..
T Consensus 86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 86 QVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 9999999999999999999999998843
No 51
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.84 E-value=4.1e-20 Score=123.19 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=86.6
Q ss_pred CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeEEEEEeCccchhhhccC
Q 048685 27 ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMG 104 (172)
Q Consensus 27 ~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 104 (172)
+|.+||||++.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||.+.+ ++++||.+.++|.++.....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 788999999999874 67999999999999999999999865 56799999999998 89999999999999965311
Q ss_pred CccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEEEc
Q 048685 105 LENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWVEV 163 (172)
Q Consensus 105 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~ 163 (172)
..+.|+.|.+.+.|+|+++++|.|+
T Consensus 87 ----------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 ----------------------------------VGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ----------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence 1256888888889999999999985
No 52
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.84 E-value=3.1e-20 Score=126.13 Aligned_cols=94 Identities=28% Similarity=0.368 Sum_probs=82.9
Q ss_pred cccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeC--CCCcEEEEEEecCCCCC
Q 048685 6 ESMLGLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRD--PNLPVHLTVYDKDTFSV 83 (172)
Q Consensus 6 ~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~--~~~~L~i~v~d~~~~~~ 83 (172)
....+.|.|+|++|++|+....+.+||||++++++..++|++++++.||+|||+|.|.... ....|.|+|||++.+++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~ 103 (127)
T cd04032 24 RRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD 103 (127)
T ss_pred cCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence 5667999999999999985337789999999999889999999999999999999997533 36789999999999999
Q ss_pred CCeeEEEEEeCccchh
Q 048685 84 DDKMGEANIDIKPYIA 99 (172)
Q Consensus 84 d~~lG~~~i~l~~l~~ 99 (172)
|++||++.++|.....
T Consensus 104 dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 104 DDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCeeEEEEEEecCCce
Confidence 9999999999996654
No 53
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.84 E-value=1.2e-19 Score=122.58 Aligned_cols=91 Identities=27% Similarity=0.518 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCee
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKM 87 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~l 87 (172)
|.|.|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+..+...|.|+|||.+.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999988 78999999999976 57899999999999999999999887778899999999999999999
Q ss_pred EEEEEeCccchhh
Q 048685 88 GEANIDIKPYIAC 100 (172)
Q Consensus 88 G~~~i~l~~l~~~ 100 (172)
|++.+++.++..+
T Consensus 81 G~~~~~l~~l~~~ 93 (120)
T cd04045 81 GSVEINVSDLIKK 93 (120)
T ss_pred eEEEEeHHHhhCC
Confidence 9999999999875
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.84 E-value=4.5e-20 Score=125.70 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=84.6
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+....+.|.|+|++|+||+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.++
T Consensus 10 ~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 10 RYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred EEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 44566789999999999999998 7899999999985 4678999999999999999999998643 4679999
Q ss_pred EEecCCC--CCCCeeEEEEEeCccchhh
Q 048685 75 VYDKDTF--SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 75 v~d~~~~--~~d~~lG~~~i~l~~l~~~ 100 (172)
|||.+.+ +++++||++.++|.++..+
T Consensus 90 v~~~~~~~~~~~~~iG~~~i~l~~l~~~ 117 (127)
T cd04030 90 VKNSKSFLSREKKLLGQVLIDLSDLDLS 117 (127)
T ss_pred EEECCcccCCCCceEEEEEEeccccccc
Confidence 9999875 6899999999999998553
No 55
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=4.2e-20 Score=125.49 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=82.3
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHL 73 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i 73 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+... ...|.|
T Consensus 10 ~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 10 WYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 45666789999999999999988 77899999999863 577999999999999999999986442 467999
Q ss_pred EEEecCCCCCCCeeEEEEEeCcc
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
+|||.+.++.+++||++.++|.+
T Consensus 90 ~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 90 TVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred EEEeCCCCCCCcEeeEEEEeccc
Confidence 99999999899999999999998
No 56
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.83 E-value=3.5e-20 Score=124.94 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=79.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEEEEEecCC
Q 048685 8 MLGLLKIRVKRGINLAVRDALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHLTVYDKDT 80 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i~v~d~~~ 80 (172)
..+.|.|+|++|+||++++.+.+||||++++.. .+.+|+++.++.||.|||+|.|.+... ...|.++|||.+.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468899999999999988877899999999862 466899999999999999999998654 3568999999987
Q ss_pred CC-CCCeeEEEEEeCccchh
Q 048685 81 FS-VDDKMGEANIDIKPYIA 99 (172)
Q Consensus 81 ~~-~d~~lG~~~i~l~~l~~ 99 (172)
.+ ++++||.+.|+|.++..
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CcCCCEEEEEEEecHHHhcc
Confidence 75 46899999999999964
No 57
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.83 E-value=3.9e-20 Score=125.73 Aligned_cols=92 Identities=23% Similarity=0.348 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeec-CCCCCeEeeEEEEEeeCC-----CCcEEEEEEecCCCC
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVIN-SNCNPVWNCDLTLPIRDP-----NLPVHLTVYDKDTFS 82 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~-~~~~P~w~e~f~f~v~~~-----~~~L~i~v~d~~~~~ 82 (172)
.|+|+|++|++|+..+ .+.+||||++++++ .+++|+++. ++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988 78999999999987 888999976 479999999999999876 467999999999888
Q ss_pred CCCeeEEEEEeCccchhhhc
Q 048685 83 VDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~ 102 (172)
++++||++.+++.++..+..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC
Confidence 89999999999999987643
No 58
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.83 E-value=9.8e-20 Score=121.35 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=80.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-----CCcEEEEEEecCCCCC
Q 048685 9 LGLLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-----NLPVHLTVYDKDTFSV 83 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-----~~~L~i~v~d~~~~~~ 83 (172)
.+.|+|+|++|++|+ .+.+||||++++++++++|+++.++.||.|+|+|.|.+..+ +..|.|+|||.+.+++
T Consensus 3 ~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 3 DFQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred cEEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 478999999999998 47899999999999999999999999999999999997654 3569999999999888
Q ss_pred CCeeEEEEEeCccchhh
Q 048685 84 DDKMGEANIDIKPYIAC 100 (172)
Q Consensus 84 d~~lG~~~i~l~~l~~~ 100 (172)
+++||++.++|.++...
T Consensus 80 ~~~iG~~~i~l~~v~~~ 96 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQ 96 (111)
T ss_pred CCccEEEEECCccccCC
Confidence 99999999999999764
No 59
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=4.1e-20 Score=125.51 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=83.5
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEE-eeCC---CCcEEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLP-IRDP---NLPVHLT 74 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-v~~~---~~~L~i~ 74 (172)
-.+....+.|.|+|++|+||++.+ .+.+||||++.+. ..+.+|+++++ .||+|||+|.|. +... +..|.++
T Consensus 9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~ 87 (124)
T cd08389 9 FEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFR 87 (124)
T ss_pred EEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEE
Confidence 356677889999999999999998 7789999998874 46789999887 999999999998 5532 5679999
Q ss_pred EEecCCCCCCCeeEEEEEeCccchhh
Q 048685 75 VYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|||.+.++++++||++.|+|+++..+
T Consensus 88 V~~~~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 88 LYGVERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred EEECCCcccCceEEEEEEeccccCCC
Confidence 99999999999999999999998543
No 60
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.82 E-value=1.1e-19 Score=128.71 Aligned_cols=94 Identities=30% Similarity=0.417 Sum_probs=82.5
Q ss_pred ccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEE
Q 048685 7 SMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVY 76 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~ 76 (172)
...|.|.|+|++|+||+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... +..|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 36799999999999999998 8899999999873 3678999999999999999999985422 356999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchhh
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|++.++++++||++.+++..+...
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccC
Confidence 999998999999999999988653
No 61
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=9.8e-20 Score=127.15 Aligned_cols=90 Identities=28% Similarity=0.427 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCC-C--------------CCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEE
Q 048685 11 LLKIRVKRGINLAVRD-A--------------LSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHL 73 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~--------------g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i 73 (172)
.|.|+|++|++|+.++ . +.+||||++.+++.+.+|++++++.||+|||+|.|.+..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999988 3 2689999999999999999999999999999999997544 567999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+|||++..++|+++|++.+++.++...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 999999999999999999999998764
No 62
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.82 E-value=1e-19 Score=125.06 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=84.9
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------CEEEEeeeecCCCCCeEeeEEEEEeeCC-----CCc
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-------KQKMKTHVINSNCNPVWNCDLTLPIRDP-----NLP 70 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-------~~~~~T~~~~~~~~P~w~e~f~f~v~~~-----~~~ 70 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||+|||+|.|.+... +..
T Consensus 10 ~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~ 89 (133)
T cd04009 10 YYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGAL 89 (133)
T ss_pred EEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCE
Confidence 34556788999999999999988 7899999999985 3478999999999999999999998752 457
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 71 VHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 71 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
|.|+|||++.++++++||++.++|.++..-
T Consensus 90 l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 90 LLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999999998899999999999998753
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=2.6e-19 Score=121.30 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=85.2
Q ss_pred cccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD--ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTV 75 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v 75 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++++. ....+|++++++.||+|||.|.|.+... ...|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 46677889999999999999886 6789999999984 4567899999999999999999998753 35799999
Q ss_pred EecCCCCCCCeeEEEEEeCccchhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
||.+..+++++||++.++|.++...
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecC
Confidence 9999988899999999999998765
No 64
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.82 E-value=9.2e-20 Score=125.44 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=81.7
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---C--EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---K--QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~--~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
-.+....+.|.|+|++|+||+..+ .+.+||||++++. . .+.+|++++++.||+|||+|.|.+... +..|.|
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~ 87 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRV 87 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEE
Confidence 355667789999999999999988 7899999999984 2 256899999999999999999998753 567999
Q ss_pred EEEecCCCCCCCeeEEEEEeCcc
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
+|||.+.++++++||++.++...
T Consensus 88 ~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 88 TVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEEeCCCCCCCCeeEEEEECCCC
Confidence 99999999999999999997664
No 65
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.82 E-value=1.7e-19 Score=122.09 Aligned_cols=97 Identities=30% Similarity=0.432 Sum_probs=84.4
Q ss_pred ccccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD--ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVH 72 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~ 72 (172)
-.+....+.|.|+|++|+||+..+ .+.+||||++++. ..+.+|++++++.||.|||+|.|.+... ...|.
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~ 86 (123)
T cd08521 7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQ 86 (123)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEE
Confidence 356677899999999999999887 5689999999974 1467999999999999999999998753 45799
Q ss_pred EEEEecCCCCCCCeeEEEEEeCccchh
Q 048685 73 LTVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 73 i~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
|+|||.+.++++++||++.++|.++..
T Consensus 87 i~v~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 87 LSVWHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred EEEEeCCCCcCCceeeEEEEecccccc
Confidence 999999999899999999999999854
No 66
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.81 E-value=1.5e-19 Score=124.55 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=82.4
Q ss_pred cccccccceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCC---CCc
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD---ALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDP---NLP 70 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~---~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~ 70 (172)
|-++....+.|.|.|++|+||++.+ .+.+||||++++.. .+.+|++++++.||+|||.|.|.+... +..
T Consensus 7 sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~ 86 (138)
T cd08407 7 SISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASS 86 (138)
T ss_pred EEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccE
Confidence 3456677899999999999999987 35589999999862 356899999999999999999998754 456
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCcc
Q 048685 71 VHLTVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 71 L~i~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|.|+|||.+.++++++||++.+++..
T Consensus 87 L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 87 VELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEEEeCCCCcCcceeceEEecCcC
Confidence 99999999999999999999999865
No 67
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=5.1e-19 Score=120.13 Aligned_cols=89 Identities=34% Similarity=0.503 Sum_probs=79.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCe
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQK--MKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~ 86 (172)
+|+|.|++|++|+..+ .+.+||||++.+++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 4789999999999988 7899999999998754 5788899999999999999998755 5679999999999999999
Q ss_pred eEEEEEeCccchh
Q 048685 87 MGEANIDIKPYIA 99 (172)
Q Consensus 87 lG~~~i~l~~l~~ 99 (172)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998864
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.81 E-value=2.9e-19 Score=124.95 Aligned_cols=92 Identities=33% Similarity=0.478 Sum_probs=81.6
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----------------------------EEEEeeeecCCC
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-----------------------------QKMKTHVINSNC 52 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-----------------------------~~~~T~~~~~~~ 52 (172)
+..+.+.+.|.|+|++|++|.+.+ .|.+||||++.+.. ..++|+++.++.
T Consensus 21 ~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 21 REAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred HhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 356788999999999999999999 88999999999852 236899999999
Q ss_pred CCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeEEEEEeCccch
Q 048685 53 NPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMGEANIDIKPYI 98 (172)
Q Consensus 53 ~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~ 98 (172)
||.|||+|.|.+... ...|.|+|||++ +++||++.++++++.
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 999999999999764 567999999987 799999999999987
No 69
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.81 E-value=2.4e-18 Score=116.97 Aligned_cols=91 Identities=29% Similarity=0.500 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCee
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKM 87 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~l 87 (172)
..|.|+|.+|+ |...+ .+.+||||++++++. ..+|+++.++.+|.|+|+|.|.+. ....|.|+|||.+..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEE
Confidence 36899999998 55554 778999999999876 899999999999999999999986 457899999999999899999
Q ss_pred EEEEEeCccchhhhc
Q 048685 88 GEANIDIKPYIACLK 102 (172)
Q Consensus 88 G~~~i~l~~l~~~~~ 102 (172)
|++.++|.++.....
T Consensus 80 G~~~i~l~~l~~~~~ 94 (125)
T cd04021 80 GEASLDLSDILKNHN 94 (125)
T ss_pred EEEEEEHHHhHhhcC
Confidence 999999999987633
No 70
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.81 E-value=2.2e-18 Score=118.64 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=77.2
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C-----------EEEEeeeecCCCCCeE-eeEEEEEeeCCCCcEEEEE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMG--K-----------QKMKTHVINSNCNPVW-NCDLTLPIRDPNLPVHLTV 75 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~-----------~~~~T~~~~~~~~P~w-~e~f~f~v~~~~~~L~i~v 75 (172)
+..|.+++|+||+ ++ .|.+||||++.+. + +.++|++++++.||.| ||+|.|.+. .+..|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4679999999998 66 8899999999984 1 3689999999999999 999999986 456899999
Q ss_pred EecCCCCC---CCeeEEEEEeCccchhhhcc
Q 048685 76 YDKDTFSV---DDKMGEANIDIKPYIACLKM 103 (172)
Q Consensus 76 ~d~~~~~~---d~~lG~~~i~l~~l~~~~~~ 103 (172)
||++..++ +++||++.+++.++......
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~ 110 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI 110 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccC
Confidence 99765433 68999999999999876433
No 71
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=163.42 Aligned_cols=119 Identities=24% Similarity=0.479 Sum_probs=103.1
Q ss_pred ccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEEEEEecCCC
Q 048685 5 VESMLGLLKIRVKRGINLAVRDALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHLTVYDKDTF 81 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i~v~d~~~~ 81 (172)
|+...|.|.|+|++|+||. .+.|.+||||++.++++ +.+|++++++.||+|||+|+|.+..| +..|+|+|||++.+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 5678999999999999998 44789999999999965 88999999999999999999988876 46799999999999
Q ss_pred CCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEecc--ceeee---EEE
Q 048685 82 SVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNN--VECGE---VEI 156 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~---l~l 156 (172)
++ +.+|.+.|++.++..++.. +.||+|.+ .+.|+ |++
T Consensus 2054 ~k-d~~G~~~i~l~~vv~~~~~-------------------------------------~~~~~L~~~~~k~G~~~~~~~ 2095 (2102)
T PLN03200 2054 GK-SSLGKVTIQIDRVVMEGTY-------------------------------------SGEYSLNPESNKDGSSRTLEI 2095 (2102)
T ss_pred CC-CCCceEEEEHHHHhcCcee-------------------------------------eeeeecCcccccCCCcceEEE
Confidence 55 5999999999999875332 66777776 57888 999
Q ss_pred EEEEEE
Q 048685 157 QLDWVE 162 (172)
Q Consensus 157 ~l~~~~ 162 (172)
+++|-+
T Consensus 2096 e~~w~~ 2101 (2102)
T PLN03200 2096 EFQWSN 2101 (2102)
T ss_pred EEEecC
Confidence 999964
No 72
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.80 E-value=2.5e-18 Score=119.10 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=96.0
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCC----
Q 048685 7 SMLGLLKIRVKRGINLAVRDALSSDPYVVITMGKQK-MKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTF---- 81 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~---- 81 (172)
.....|.|.|++|++|++++ +|||.+.+++.. .+|+++.++.||.|+|+|.|....+...+.|.||..+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence 45677999999999998765 799999999877 499999999999999999998776667899999865432
Q ss_pred CCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEE
Q 048685 82 SVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWV 161 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 161 (172)
.++.+||.+.||+.++..+... ..|+++.+........ |. -.....+.|+++++|.
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~v--------e~Wfpl~~~~~~~~~~--------~~--------~~~~~~~~lrik~rf~ 139 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFV--------EKWYPVSTPKGNGKSG--------GK--------EGKGESPSIRIKARYQ 139 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcc--------cEEEEeecCCCCCccc--------cc--------cccCCCCEEEEEEEEE
Confidence 1578999999999998754222 3455554443321000 00 0112457999999999
Q ss_pred EcC
Q 048685 162 EVP 164 (172)
Q Consensus 162 ~~~ 164 (172)
++.
T Consensus 140 ~~~ 142 (146)
T cd04013 140 STR 142 (146)
T ss_pred Eee
Confidence 864
No 73
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.80 E-value=3.3e-18 Score=119.60 Aligned_cols=89 Identities=25% Similarity=0.373 Sum_probs=73.4
Q ss_pred EEEEEEEeec--CCCCC-CCCCCcEEEEEE--C---CEEEEeeeecCCCCCeEeeEEEEEeeCC---------CCcEEEE
Q 048685 12 LKIRVKRGIN--LAVRD-ALSSDPYVVITM--G---KQKMKTHVINSNCNPVWNCDLTLPIRDP---------NLPVHLT 74 (172)
Q Consensus 12 L~V~v~~a~~--L~~~~-~g~~dpyv~v~~--~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~---------~~~L~i~ 74 (172)
..++|..|++ |+..+ .+.+||||++++ . .++.+|+++++|.||+|||+|.|.+... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 66666 678999999997 2 4689999999999999999999999654 3469999
Q ss_pred EEecCCC-CCCCeeEEEEEeCccchhh
Q 048685 75 VYDKDTF-SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 75 v~d~~~~-~~d~~lG~~~i~l~~l~~~ 100 (172)
|||.+.+ ++|++||++.++|..+..+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc
Confidence 9999886 5799999999999998654
No 74
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.9e-19 Score=141.63 Aligned_cols=137 Identities=29% Similarity=0.392 Sum_probs=107.3
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVY 76 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~ 76 (172)
.+.-....|.|+|++|.+|+..+ .|.+||||++++. +.+.+|++.++++||.|||+|.|.+... ...|.++||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 45566778999999999999999 7789999999986 4688999999999999999999997643 567999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEE
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEI 156 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l 156 (172)
|.+.|++|+++|++.++|..+...... ..|..+++..... ....|+|.+
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~--------~~w~~l~~~~~~~-----------------------~~~~gel~~ 289 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTT--------LFWKDLQPSSTDS-----------------------EELAGELLL 289 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccc--------eeeeccccccCCc-----------------------ccccceEEE
Confidence 999999999999999998887654221 2344444432211 012279999
Q ss_pred EEEEEEcCCCCceee
Q 048685 157 QLDWVEVPGCKGLGF 171 (172)
Q Consensus 157 ~l~~~~~~~~~~~~~ 171 (172)
.|.|+|..+.--+.|
T Consensus 290 sL~Y~p~~g~ltv~v 304 (421)
T KOG1028|consen 290 SLCYLPTAGRLTVVV 304 (421)
T ss_pred EEEeecCCCeEEEEE
Confidence 999988876655544
No 75
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.80 E-value=4.1e-19 Score=121.99 Aligned_cols=93 Identities=29% Similarity=0.394 Sum_probs=82.7
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.|+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 46677899999999999999988 7899999999985 2467999999999999999999998754 4579999
Q ss_pred EEecCCCCCCCeeEEEEEeCcc
Q 048685 75 VYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|||.+..+++++||++.+++..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC
Confidence 9999998889999999999975
No 76
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.80 E-value=4.7e-19 Score=122.16 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=82.9
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
-.+....+.|.|+|++|++|+..+ .+.+||||++.+. + ..++|++++++.||.|||+|.|.+... ...|.|
T Consensus 8 l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 8 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred eEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 356778899999999999999988 7899999999984 2 457899999999999999999998643 246999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccc
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l 97 (172)
+|||.+.+++|++||++.+++...
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 88 TVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEEeCCCCCCCceeEEEEECCccC
Confidence 999999999999999999999764
No 77
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=6.1e-19 Score=121.76 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=84.2
Q ss_pred cccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPV 71 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L 71 (172)
|-.+....+.|.|+|++|+||++.+ .+.+||||++.+. + .+++|++++++.||+|||+|.|.+... +..|
T Consensus 7 sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L 86 (138)
T cd08408 7 GLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTL 86 (138)
T ss_pred EeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEE
Confidence 3456778899999999999999988 7889999999984 1 256999999999999999999998743 4579
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCccch
Q 048685 72 HLTVYDKDTFSVDDKMGEANIDIKPYI 98 (172)
Q Consensus 72 ~i~v~d~~~~~~d~~lG~~~i~l~~l~ 98 (172)
.|+|||.+.++++++||++.+++....
T Consensus 87 ~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 87 MFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 999999999999999999999987553
No 78
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.79 E-value=8.6e-19 Score=120.07 Aligned_cols=90 Identities=30% Similarity=0.473 Sum_probs=81.0
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEEEEEecCCC
Q 048685 10 GLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHLTVYDKDTF 81 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i~v~d~~~~ 81 (172)
+.|+|+|++|++|+..+ .+.+||||++.+. ...++|+++.++.+|.|+|+|.|.+..+ ...|.++|||.+.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 88999999999999887 7789999999985 3678999999999999999999998754 45799999999988
Q ss_pred CCCCeeEEEEEeCccchh
Q 048685 82 SVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~ 99 (172)
+++++||++.+++.++..
T Consensus 93 ~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 93 TRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCcceeEEEEEeHHHhCc
Confidence 899999999999998864
No 79
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=9.3e-19 Score=120.67 Aligned_cols=93 Identities=27% Similarity=0.400 Sum_probs=81.3
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+....+.|.|+|++|++|+..+ .|.+||||++.+. + .+.+|++++++.||.|+|+|.|.+... ...|.|+
T Consensus 9 ~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 9 CYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred EEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 44556789999999999999988 8899999999984 2 356899999999999999999998643 4568999
Q ss_pred EEecCCCCCCCeeEEEEEeCcc
Q 048685 75 VYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|||++.++++++||++.+++..
T Consensus 89 v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 89 VLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EEECCCCCCCccEEEEEECCcC
Confidence 9999999999999999999987
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=2e-18 Score=115.57 Aligned_cols=89 Identities=31% Similarity=0.470 Sum_probs=79.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCeeE
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~lG 88 (172)
|+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+... ...+.|+|||.+.++++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999888 77899999999974 557999999999999999999998764 567999999999988999999
Q ss_pred EEEEeCccchhh
Q 048685 89 EANIDIKPYIAC 100 (172)
Q Consensus 89 ~~~i~l~~l~~~ 100 (172)
++.+++.++..+
T Consensus 81 ~~~~~l~~l~~~ 92 (115)
T cd04040 81 SAYIDLSDLEPE 92 (115)
T ss_pred EEEEEHHHcCCC
Confidence 999999998653
No 81
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.79 E-value=1.1e-18 Score=120.34 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC----CEEEEeeeecCCCCCeEeeEEEEEeeCC----------------CCcE
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMG----KQKMKTHVINSNCNPVWNCDLTLPIRDP----------------NLPV 71 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~v~~~----------------~~~L 71 (172)
|+|+|++|++|+.+..+.+||||+++++ ...++|+++.++.||.|+|+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999987756789999999998 6789999999999999999999998754 3469
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 72 HLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 72 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.|+|||.+.++++++||++.+++.++...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~ 109 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQA 109 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence 99999999988999999999999998743
No 82
>PLN03008 Phospholipase D delta
Probab=99.78 E-value=2.7e-18 Score=144.25 Aligned_cols=122 Identities=19% Similarity=0.382 Sum_probs=100.7
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEECCE-EE
Q 048685 8 MLGLLKIRVKRGINLAVRD-------------------------------------------ALSSDPYVVITMGKQ-KM 43 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~-------------------------------------------~g~~dpyv~v~~~~~-~~ 43 (172)
..|.|.++|.+|++|+.++ .+++||||+|.+++. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 5788999999999998521 135699999999875 56
Q ss_pred EeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcc
Q 048685 44 KTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRIN 123 (172)
Q Consensus 44 ~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (172)
+|+++.++.||+|||+|.|.+..+...|.|+|||.+.++ +++||++.||+.++..+...
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v-------------------- 150 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI-------------------- 150 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce--------------------
Confidence 999999999999999999999988889999999999996 58999999999998764221
Q ss_pred eeccCCceEecCCeeeEeEeEEeccc------eeeeEEEEEEEEEcCCCC
Q 048685 124 CLLDESSIIWNNGKITQDMSLRLNNV------ECGEVEIQLDWVEVPGCK 167 (172)
Q Consensus 124 ~~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~l~l~l~~~~~~~~~ 167 (172)
+.|++|.+. ..++|+++++|.|+...+
T Consensus 151 -----------------d~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 151 -----------------SGWFPVLGASGKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred -----------------EEEEEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence 445555332 457999999999998765
No 83
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=1.2e-18 Score=120.06 Aligned_cols=94 Identities=27% Similarity=0.356 Sum_probs=82.3
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+....+.|.|+|++|+||+..+ .+.+||||++.+. + .+.+|++++++.||.|||+|.|.+... +..|.|+
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 45677899999999999999888 7899999999983 2 357899999999999999999997632 4579999
Q ss_pred EEecCCCCCCCeeEEEEEeCccc
Q 048685 75 VYDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~l 97 (172)
|||.+.++++++||++.+++...
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC
Confidence 99999999999999999999875
No 84
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.78 E-value=5.5e-18 Score=113.72 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=65.5
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCCCCCee
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFSVDDKM 87 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~~d~~l 87 (172)
|.|+|++|++|+.. +.+||||++++++. .++|+++.+ .||.|||+|.|.+... ...|.+.+||.+....+..+
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999987 78999999999874 579999988 9999999999998763 34578888998876566666
Q ss_pred EEEEEe
Q 048685 88 GEANID 93 (172)
Q Consensus 88 G~~~i~ 93 (172)
|.+.+.
T Consensus 79 g~v~l~ 84 (117)
T cd08383 79 GKVALS 84 (117)
T ss_pred EEEEec
Confidence 765544
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.78 E-value=1.7e-18 Score=119.08 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=82.1
Q ss_pred cccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVH 72 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~ 72 (172)
|-.+....+.|+|+|++|++|++.+ .|.+||||++.+. + ...+|++++++.||.|+|+|.|.+... ...|.
T Consensus 6 ~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~ 85 (134)
T cd08403 6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLI 85 (134)
T ss_pred EEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEE
Confidence 4456778899999999999999998 8899999999984 2 367899999999999999999998643 23589
Q ss_pred EEEEecCCCCCCCeeEEEEEeCcc
Q 048685 73 LTVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 73 i~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|+|||++.++++++||++.+++..
T Consensus 86 ~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 86 IAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred EEEEECCCCCCCceeEEEEECCCC
Confidence 999999999999999999998773
No 86
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.78 E-value=1.7e-18 Score=119.20 Aligned_cols=94 Identities=23% Similarity=0.362 Sum_probs=79.7
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K---QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
-.+....+.|.|+|++|++|+..+ .|.+||||++++. . .+.+|++++++.||.|||+|.|.+... +..|.|
T Consensus 7 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 7 LNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred EEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 345667789999999999999988 7899999999973 2 357899999999999999999998643 335999
Q ss_pred EEEecCCCCCCCeeEEEEEeCcc
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
+|||++..+++++||++.+....
T Consensus 87 ~V~d~d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 87 TVYGHNVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred EEEeCCCCCCCcEEEEEEEcCcc
Confidence 99999999999999998876533
No 87
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.78 E-value=1.1e-17 Score=111.32 Aligned_cols=81 Identities=23% Similarity=0.469 Sum_probs=70.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEec-------C
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDK-------D 79 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~-------~ 79 (172)
|.|+|.+|+||+ +.+||||++.+.. ...+|+++.+++||+|||+|.|.+. ....|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence 689999999995 5689999999852 4689999999999999999999997 467899999998 4
Q ss_pred CCCCCCeeEEEEEeCccc
Q 048685 80 TFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l 97 (172)
..+.|+++|.+.+.|+.-
T Consensus 76 ~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred ccCcccEEEEEEEEECHH
Confidence 567899999998887643
No 88
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.77 E-value=2.8e-18 Score=116.98 Aligned_cols=96 Identities=15% Similarity=0.295 Sum_probs=81.4
Q ss_pred cccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---C--EEEEeeeecCCC-CCeEeeEEEEEeeCC--CCcEE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG---K--QKMKTHVINSNC-NPVWNCDLTLPIRDP--NLPVH 72 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~---~--~~~~T~~~~~~~-~P~w~e~f~f~v~~~--~~~L~ 72 (172)
|-.+....+.|+|.|++|+||++.. .+..||||++++. + .+.+|++++++. +|.|||+|.|++..+ +..|.
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL 85 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence 3456778899999999999999875 6677999999974 1 577899999995 699999999999865 33588
Q ss_pred EEEEecCCCCCCCeeEEEEEeCccc
Q 048685 73 LTVYDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 73 i~v~d~~~~~~d~~lG~~~i~l~~l 97 (172)
|+|||++..+++++||++.++.+..
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccC
Confidence 9999999988999999999998764
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=5.8e-18 Score=114.72 Aligned_cols=98 Identities=27% Similarity=0.324 Sum_probs=83.6
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHL 73 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i 73 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||+|.|..... +..|.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 45667789999999999999888 7899999999973 2478999999999999999999963322 457999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccchhhhc
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (172)
+|||.+.+ .+++||++.+++.++..+..
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCcc
Confidence 99999988 88999999999999986533
No 90
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.76 E-value=1.9e-19 Score=140.81 Aligned_cols=92 Identities=30% Similarity=0.458 Sum_probs=84.0
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC--CCcEEEEEEecCC
Q 048685 9 LGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP--NLPVHLTVYDKDT 80 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~--~~~L~i~v~d~~~ 80 (172)
...|+|.|.+|+||-+++ +|.+||||++.+- ..+++|++++.++||+|||+|+|.+... +..|.|+||||+.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 456899999999999999 9999999999984 3678999999999999999999999865 5679999999999
Q ss_pred CCCCCeeEEEEEeCccchhh
Q 048685 81 FSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~ 100 (172)
.++++|+|...+.++++..+
T Consensus 259 TsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred cccccccceecccHHHHhhc
Confidence 99999999999999999875
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.76 E-value=3.7e-17 Score=111.30 Aligned_cols=89 Identities=30% Similarity=0.499 Sum_probs=77.1
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEEC------CEEEEeeeecCCC-CCeEeeEEEEEeeCCC-CcEEEEEEec
Q 048685 10 GLLKIRVKRGINLAVRD---ALSSDPYVVITMG------KQKMKTHVINSNC-NPVWNCDLTLPIRDPN-LPVHLTVYDK 78 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~---~g~~dpyv~v~~~------~~~~~T~~~~~~~-~P~w~e~f~f~v~~~~-~~L~i~v~d~ 78 (172)
-.|+|+|++|++|+..+ .+.+||||++++. ..+++|+++.++. ||.|+|+|.|.+..+. ..|.++|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999876 5789999999983 4568999988775 9999999999988664 4689999999
Q ss_pred CCCCCCCeeEEEEEeCccchh
Q 048685 79 DTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~ 99 (172)
+.. +++++|++.+++.++..
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC
Confidence 988 89999999999998843
No 92
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.75 E-value=7.6e-18 Score=116.26 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=80.6
Q ss_pred cccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRDALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTV 75 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v 75 (172)
.+....+.|.|+|++|+||+..+.+.+||||++.+.. .+.+|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 9 ~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 9 TYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred EECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4566778999999999999988766799999999752 366899999999999999999998643 35799999
Q ss_pred EecCCCCCCCeeEEEEEeCccc
Q 048685 76 YDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l 97 (172)
||.+..+++++||++.++....
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EeCCCCCCcceEEEEEECCccc
Confidence 9999998999999999986543
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.75 E-value=1.1e-17 Score=112.87 Aligned_cols=86 Identities=28% Similarity=0.340 Sum_probs=75.3
Q ss_pred EEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCC----C
Q 048685 15 RVKRGINLAVRD-ALSSDPYVVITMGKQ-------KMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDT----F 81 (172)
Q Consensus 15 ~v~~a~~L~~~~-~g~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~----~ 81 (172)
-.++|++|+..+ .+.+||||++++... .++|++++++.||.|+|+|.|.+... ...|.++|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 347899999988 889999999998643 48999999999999999999986543 5679999999997 7
Q ss_pred CCCCeeEEEEEeCccchhh
Q 048685 82 SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~ 100 (172)
+++++||++.+++.++..+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 8999999999999999865
No 94
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.75 E-value=1.1e-17 Score=114.83 Aligned_cols=93 Identities=27% Similarity=0.378 Sum_probs=82.1
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+....+.|.|+|++|++|+..+ .+.+||||++++.. ..++|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 8 SYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred EeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 44556789999999999999988 78999999999853 356899999999999999999998764 4679999
Q ss_pred EEecCCCCCCCeeEEEEEeCcc
Q 048685 75 VYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|||.+.++++++||.+.+++.+
T Consensus 88 v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 88 VVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EEecCCCCCCceeEEEEECCCC
Confidence 9999988889999999999998
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.71 E-value=1.1e-16 Score=106.35 Aligned_cols=86 Identities=28% Similarity=0.487 Sum_probs=73.4
Q ss_pred EEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeecCCCCCeEeeEEEEEeeC-----CCCcEEEEEEecCCC
Q 048685 14 IRVKRGINLAVRD-ALSSDPYVVITMGK------QKMKTHVINSNCNPVWNCDLTLPIRD-----PNLPVHLTVYDKDTF 81 (172)
Q Consensus 14 V~v~~a~~L~~~~-~g~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~v~~-----~~~~L~i~v~d~~~~ 81 (172)
+-.++|++|+..+ .+.+||||++++.. ..++|++++++.||.|+ +|.|.+.. ....|.|+|||++.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456899999999 88999999999753 35899999999999999 68887532 156799999999999
Q ss_pred CCCCeeEEEEEeCccchhh
Q 048685 82 SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~ 100 (172)
++|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999843
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.69 E-value=3.1e-16 Score=98.73 Aligned_cols=80 Identities=35% Similarity=0.670 Sum_probs=71.9
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCCe
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGK---QKMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~~ 86 (172)
|.|+|++|+||+..+ .+..+|||++.+.. ..++|+++.++.+|.|+|+|.|.+..+ ...|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999977 77999999999976 679999999999999999999997654 4559999999999988999
Q ss_pred eEEEE
Q 048685 87 MGEAN 91 (172)
Q Consensus 87 lG~~~ 91 (172)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 97
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.61 E-value=3e-15 Score=122.67 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=105.0
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCe
Q 048685 9 LGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~ 86 (172)
...|.|+|.+|+||++.+ .|..||||.|.+++ ...+|.++.+++.|.|.|+|.|.+...-..|.|.|||.+ +++|+.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence 346899999999999999 89999999999986 578999999999999999999999977788999999999 899999
Q ss_pred eEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEEEEEEEcCCC
Q 048685 87 MGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQLDWVEVPGC 166 (172)
Q Consensus 87 lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~~~~ 166 (172)
||.+.|.=+++... |.-..|..++|.++ .....|+|++++++......
T Consensus 83 IGKvai~re~l~~~--------~~~d~W~~L~~VD~------------------------dsEVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY--------PGKDTWFSLQPVDP------------------------DSEVQGKVHLELALTEAIQS 130 (800)
T ss_pred cceeeeeHHHHhhC--------CCCccceeccccCC------------------------ChhhceeEEEEEEeccccCC
Confidence 99999987777553 11123344444433 12258999999999888776
Q ss_pred Ccee
Q 048685 167 KGLG 170 (172)
Q Consensus 167 ~~~~ 170 (172)
++++
T Consensus 131 ~~~~ 134 (800)
T KOG2059|consen 131 SGLV 134 (800)
T ss_pred Ccch
Confidence 6653
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.8e-15 Score=123.49 Aligned_cols=96 Identities=26% Similarity=0.443 Sum_probs=86.2
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCC--
Q 048685 5 VESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTF-- 81 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~-- 81 (172)
.++-...++++|++|++|..++ .|++||||.+++++.+.+|+++...+||+|+|.|+|.+.+....+++.|||.+.-
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 3455678999999999999999 9999999999999999999999999999999999999999888999999998753
Q ss_pred ---------CCCCeeEEEEEeCccchhh
Q 048685 82 ---------SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 82 ---------~~d~~lG~~~i~l~~l~~~ 100 (172)
..|+|+|+..|.+..+..+
T Consensus 370 sklrqkl~resddflgqtvievrtlsge 397 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE 397 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc
Confidence 3688999999998877553
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.57 E-value=5.1e-14 Score=90.76 Aligned_cols=90 Identities=32% Similarity=0.583 Sum_probs=79.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE---EEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCCC
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQ---KMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVDD 85 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~---~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d~ 85 (172)
.|.|.|++|++|.... .+..+|||++.+... ..+|+++.++.+|.|+++|.|.+..+ ...|.|+|||....+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 3789999999998877 467899999999864 79999999999999999999999877 788999999999887789
Q ss_pred eeEEEEEeCccchhh
Q 048685 86 KMGEANIDIKPYIAC 100 (172)
Q Consensus 86 ~lG~~~i~l~~l~~~ 100 (172)
++|.+.+++.++..+
T Consensus 81 ~~G~~~~~l~~~~~~ 95 (101)
T smart00239 81 FIGQVTIPLSDLLLG 95 (101)
T ss_pred eeEEEEEEHHHcccC
Confidence 999999999888664
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=4.3e-14 Score=96.35 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=76.7
Q ss_pred EEEEEEEEeecCCCCC---CC--CCCcEEEEEEC---CEEEEeeeecCCCC--CeEeeEEEEEeeCC-------------
Q 048685 11 LLKIRVKRGINLAVRD---AL--SSDPYVVITMG---KQKMKTHVINSNCN--PVWNCDLTLPIRDP------------- 67 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~---~g--~~dpyv~v~~~---~~~~~T~~~~~~~~--P~w~e~f~f~v~~~------------- 67 (172)
.|+|.|.+|++++..+ .| .+||||++.+. ..+++|.++.+++| |.||+.|.|.+..+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999966543 55 49999999986 36789999999999 99999999987651
Q ss_pred -----------CCcEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 68 -----------NLPVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 68 -----------~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
...|.++|||.+.+++|+++|++.++|..+..+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 245999999999999999999999999988664
No 101
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.55 E-value=6.7e-14 Score=120.26 Aligned_cols=133 Identities=23% Similarity=0.364 Sum_probs=107.9
Q ss_pred cccccccceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEe
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVRD---ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYD 77 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~~---~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d 77 (172)
+.....+.|+|.|+|.+|++|...+ .+..|||+.+.+.+ ...+|++.+++.||+|||+|.+.+..-++.|.++|||
T Consensus 428 ~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD 507 (1227)
T COG5038 428 AGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYD 507 (1227)
T ss_pred ccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEe
Confidence 3335678999999999999999888 78999999999753 4559999999999999999999998778999999999
Q ss_pred cCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccceeeeEEEE
Q 048685 78 KDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVECGEVEIQ 157 (172)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~ 157 (172)
.+.+.+|+.+|.+.++|..+.......-+ -.-+......-|+|+..
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~ne----------------------------------~~e~~~~~k~vGrL~yD 553 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVKKNE----------------------------------LYEFLRNTKNVGRLTYD 553 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccccccc----------------------------------eeeeeccCccceEEEEe
Confidence 99999999999999999998875433111 11222234467999999
Q ss_pred EEEEEcCCCCc
Q 048685 158 LDWVEVPGCKG 168 (172)
Q Consensus 158 l~~~~~~~~~~ 168 (172)
++|+|.-..+.
T Consensus 554 l~ffp~~e~k~ 564 (1227)
T COG5038 554 LRFFPVIEDKK 564 (1227)
T ss_pred eeeecccCCcc
Confidence 99998876654
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.50 E-value=3.3e-13 Score=86.61 Aligned_cols=87 Identities=39% Similarity=0.693 Sum_probs=78.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeC-CCCcEEEEEEecCCCCCCCeeE
Q 048685 12 LKIRVKRGINLAVRD-ALSSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRD-PNLPVHLTVYDKDTFSVDDKMG 88 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~-~~~~L~i~v~d~~~~~~d~~lG 88 (172)
|.|.|++|++|.... ....+|||.+.+.. ..++|.++.++.||.|++.|.|.+.. ....|.++||+.+..+.+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998766 66899999999987 88999999999999999999999987 4677999999999887789999
Q ss_pred EEEEeCccch
Q 048685 89 EANIDIKPYI 98 (172)
Q Consensus 89 ~~~i~l~~l~ 98 (172)
.+.+++..+.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999987
No 103
>PLN02270 phospholipase D alpha
Probab=99.47 E-value=9.5e-13 Score=111.10 Aligned_cols=122 Identities=18% Similarity=0.249 Sum_probs=99.2
Q ss_pred cceEEEEEEEEeecCCCC-----------------C--CCCCCcEEEEEECCE-EEEeeeecCC-CCCeEeeEEEEEeeC
Q 048685 8 MLGLLKIRVKRGINLAVR-----------------D--ALSSDPYVVITMGKQ-KMKTHVINSN-CNPVWNCDLTLPIRD 66 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~-----------------~--~g~~dpyv~v~~~~~-~~~T~~~~~~-~~P~w~e~f~f~v~~ 66 (172)
..|.|.|+|.+|++|++. . .+.+|||+.+.+++. ..+|+++.+. .||.|+|+|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 578999999999999863 1 246799999999875 5699999885 699999999999998
Q ss_pred CCCcEEEEEEecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEe
Q 048685 67 PNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRL 146 (172)
Q Consensus 67 ~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 146 (172)
....+.|+|.|.+.++. .+||.+.||+.++..+... +.|+++
T Consensus 86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i-------------------------------------~~~~~~ 127 (808)
T PLN02270 86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV-------------------------------------DRWVEI 127 (808)
T ss_pred CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc-------------------------------------ccEEec
Confidence 88999999999999865 6999999999999775222 344544
Q ss_pred ccc------eeeeEEEEEEEEEcCCCC
Q 048685 147 NNV------ECGEVEIQLDWVEVPGCK 167 (172)
Q Consensus 147 ~~~------~~G~l~l~l~~~~~~~~~ 167 (172)
-+. ..-+|+++++|.++...+
T Consensus 128 ~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 128 LDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 332 234999999999988654
No 104
>PLN02223 phosphoinositide phospholipase C
Probab=99.46 E-value=1.9e-12 Score=105.28 Aligned_cols=91 Identities=27% Similarity=0.504 Sum_probs=76.6
Q ss_pred eEEEEEEEEeecCCCC-----C-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCCCCc-EEEEEEe
Q 048685 10 GLLKIRVKRGINLAVR-----D-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDPNLP-VHLTVYD 77 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~-----~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~-L~i~v~d 77 (172)
..|.|+|+.|++++.. + ...+||||+|.+. ...++|.+..++.||+|||+|.|.+..|+.. |.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5699999999987521 2 3468999999985 2456787777889999999999999988764 7999999
Q ss_pred cCCCCCCCeeEEEEEeCccchhh
Q 048685 78 KDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.+..+.++++|+..+|+..+..+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G 511 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG 511 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC
Confidence 99888899999999999999775
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.7e-13 Score=108.35 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=80.8
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEE
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLT 74 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~ 74 (172)
.+-...|.|+|.|++|++|..++ .+.+||||++.+- ..+.+|.+.+++.||+|||+|.|.+... +..|.|+
T Consensus 292 ~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 292 CYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred EeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 34566799999999999999999 7899999999974 2567899999999999999999988754 3468999
Q ss_pred EEecCCCCCCCeeEEEEEeCcc
Q 048685 75 VYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 75 v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
|||.+.++.+++||.+.+....
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999999999999998887765
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.42 E-value=5.9e-13 Score=114.57 Aligned_cols=102 Identities=27% Similarity=0.402 Sum_probs=91.2
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCC
Q 048685 5 VESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTF 81 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~ 81 (172)
|=...|-|.|.+..|.||+..+ +|.+||||++.+.+. .++|+++++++||+|||+|.+++.+. ...+.+.|+|++..
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence 4456799999999999999999 889999999999865 88999999999999999999999865 56789999999999
Q ss_pred CCCCeeEEEEEeCccchhhhccCCc
Q 048685 82 SVDDKMGEANIDIKPYIACLKMGLE 106 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~ 106 (172)
.+++.||.+.++|..+..+...+..
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~ 1139 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSN 1139 (1227)
T ss_pred CCccccccccccHhhcCcCCcccee
Confidence 9999999999999999887666444
No 107
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=105.29 Aligned_cols=92 Identities=32% Similarity=0.551 Sum_probs=84.9
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeecCCCCCeEe-eEEEEEeeCC---CCcEEEEEEecCCCC
Q 048685 9 LGLLKIRVKRGINLAVRD--ALSSDPYVVITMGKQKMKTHVINSNCNPVWN-CDLTLPIRDP---NLPVHLTVYDKDTFS 82 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~-e~f~f~v~~~---~~~L~i~v~d~~~~~ 82 (172)
.|.|-|.|..|++|+-++ +...|.||.+.+++..++|.+..+++||.|| ++|.|++.+. ++.|+|.+.|++..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 578999999999999999 5688999999999999999999999999998 7799999875 678999999999999
Q ss_pred CCCeeEEEEEeCccchhh
Q 048685 83 VDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~ 100 (172)
.++-||.+.|+++.+.-+
T Consensus 82 andaigkv~i~idpl~~e 99 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLE 99 (1169)
T ss_pred cccccceeeeccChHHHH
Confidence 999999999999998754
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.35 E-value=2e-11 Score=101.17 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=77.0
Q ss_pred ceEEEEEEEEeecCCCCC-------CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCCCCc-EEEEE
Q 048685 9 LGLLKIRVKRGINLAVRD-------ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDPNLP-VHLTV 75 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~-------~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~-L~i~v 75 (172)
...|.|+|+.|++++... ....||||++.+- ..+.+|+++.++.||+|+|+|.|.+..++.. +.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 457999999999875321 2345999999974 3567999999999999999999999887644 78999
Q ss_pred EecCCCCCCCeeEEEEEeCccchhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
||++..+.++++|++.+|+..+..+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC
Confidence 9999888899999999999999765
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.30 E-value=3.6e-11 Score=99.56 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=77.1
Q ss_pred ceEEEEEEEEeecCCCC------C-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCCCCc-EEEEE
Q 048685 9 LGLLKIRVKRGINLAVR------D-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDPNLP-VHLTV 75 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~------~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~-L~i~v 75 (172)
...|.|+|+.|++++.. + ....||||+|.+- ..+.+|++..++.||.|+|+|.|.+..|+.. |.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987521 1 2357999999974 3456888888899999999999999888654 79999
Q ss_pred EecCCCCCCCeeEEEEEeCccchhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+|.+..+.|+|+|+..+|+..|..+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc
Confidence 9999888999999999999999876
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.30 E-value=2.6e-11 Score=78.48 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=72.5
Q ss_pred EEEEEEEeecCCCCC----CCCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCe
Q 048685 12 LKIRVKRGINLAVRD----ALSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDK 86 (172)
Q Consensus 12 L~V~v~~a~~L~~~~----~g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~ 86 (172)
|.|+|.+|+|+.... .+.++|||.+.+++. +.+|++ +.||.|||+|.|.+. ....+.+.|||+..- ..--
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 679999999998776 568899999999975 888887 589999999999995 578899999998643 3456
Q ss_pred eEEEEEeCccchhhhcc
Q 048685 87 MGEANIDIKPYIACLKM 103 (172)
Q Consensus 87 lG~~~i~l~~l~~~~~~ 103 (172)
+|..-+.++++..+...
T Consensus 76 i~llW~~~sdi~Ee~Rr 92 (109)
T cd08689 76 VGLLWLRLSDIAEEIRK 92 (109)
T ss_pred eeeehhhHHHHHHHHHH
Confidence 89999999998876433
No 111
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.27 E-value=1.1e-10 Score=96.47 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=76.6
Q ss_pred ceEEEEEEEEeecCC--CC--C---CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCCCCc-EEEEE
Q 048685 9 LGLLKIRVKRGINLA--VR--D---ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDPNLP-VHLTV 75 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~--~~--~---~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~-L~i~v 75 (172)
...|.|+|+.|++++ .. . ....||||+|.+. ..+.+|+++.++.||.|+|+|.|.+..++.. |.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998753 11 1 2357999999984 3567999999999999999999999887654 79999
Q ss_pred EecCCCCCCCeeEEEEEeCccchhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+|.+..+.++++|+..+|+..+..+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999888899999999999999876
No 112
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.27 E-value=2e-11 Score=102.09 Aligned_cols=91 Identities=23% Similarity=0.362 Sum_probs=77.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----C-EEEEeeeecCCCCCeEe-eEEEEEeeCCCC-cEEEEEEecCCC
Q 048685 10 GLLKIRVKRGINLAVRDALSSDPYVVITMG-----K-QKMKTHVINSNCNPVWN-CDLTLPIRDPNL-PVHLTVYDKDTF 81 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-----~-~~~~T~~~~~~~~P~w~-e~f~f~v~~~~~-~L~i~v~d~~~~ 81 (172)
-.|.|.|+.|+.|+..+-+...|||.|.+- . ..++|.++.|++||+|+ |.|+|.+.+|+- -|.+.|+|.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 568999999999997766677899999974 2 34455666678999999 999999999865 479999999999
Q ss_pred CCCCeeEEEEEeCccchhh
Q 048685 82 SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~ 100 (172)
+...|||++..|+..+..+
T Consensus 1145 s~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred CCcceeeeeecchhhhhcc
Confidence 9999999999999998765
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.25 E-value=6.7e-11 Score=98.55 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=77.5
Q ss_pred EEEEEEEEeecCCCCC----C-CCCCcEEEEEECC-----EEEEeee-ecCCCCCeEeeEEEEEeeCCCCc-EEEEEEec
Q 048685 11 LLKIRVKRGINLAVRD----A-LSSDPYVVITMGK-----QKMKTHV-INSNCNPVWNCDLTLPIRDPNLP-VHLTVYDK 78 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~----~-g~~dpyv~v~~~~-----~~~~T~~-~~~~~~P~w~e~f~f~v~~~~~~-L~i~v~d~ 78 (172)
.|.|.|+.|+++++.. . ...||||.|++-+ ...+|++ ..++-||.|+|+|+|.+..|+.. |.|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766543 2 3679999999753 5678984 45679999999999999998765 68999999
Q ss_pred CCCCCCCeeEEEEEeCccchhhhc
Q 048685 79 DTFSVDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~ 102 (172)
+..++|+|+|+..+|+..|..+..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee
Confidence 999999999999999999987633
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=99.24 E-value=2.1e-10 Score=94.64 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=75.8
Q ss_pred eEEEEEEEEeecCCC---CC----CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeE-eeEEEEEeeCCCC-cEEEEE
Q 048685 10 GLLKIRVKRGINLAV---RD----ALSSDPYVVITMG-----KQKMKTHVINSNCNPVW-NCDLTLPIRDPNL-PVHLTV 75 (172)
Q Consensus 10 g~L~V~v~~a~~L~~---~~----~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w-~e~f~f~v~~~~~-~L~i~v 75 (172)
..|.|+|+.|++|+. .+ ....||||++.+. ..+++|+++.++.||.| +|+|.|.+..++. -|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998732 11 2347999999974 35679999988899999 9999999988764 478999
Q ss_pred EecCCCCCCCeeEEEEEeCccchhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+|.+..+.++++|+..+|+..|..+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G 535 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG 535 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC
Confidence 9999888899999999999999765
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.14 E-value=1.2e-11 Score=102.42 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=82.9
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------EEEEeeeecCCCCCeEeeEEEEEeeCC-----CCcE
Q 048685 5 VESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-------QKMKTHVINSNCNPVWNCDLTLPIRDP-----NLPV 71 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-------~~~~T~~~~~~~~P~w~e~f~f~v~~~-----~~~L 71 (172)
+......|.|.|+.|+++.+-| +|.+||||++.++. ..++|+++.+++||+|+|.|.|.+... ...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 3456677889999999999999 99999999999973 457999999999999999999999754 2348
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCccchh
Q 048685 72 HLTVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 72 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
.++|+|.|-.+.++|-|++.+.|.++-.
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988753
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=101.75 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=77.8
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C-----------E------------------EEEeeeecCC
Q 048685 4 SVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG--K-----------Q------------------KMKTHVINSN 51 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~--~-----------~------------------~~~T~~~~~~ 51 (172)
..+.|...+.|.+.+|.||..++ +|.+|||+...+- . + -+-|.+.+.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 44667778889999999999999 9999999988652 0 0 0246778889
Q ss_pred CCCeEeeEEEEEeeCC-CCcEEEEEEecCCC---------------------------------C---CCCeeEEEEEeC
Q 048685 52 CNPVWNCDLTLPIRDP-NLPVHLTVYDKDTF---------------------------------S---VDDKMGEANIDI 94 (172)
Q Consensus 52 ~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~---------------------------------~---~d~~lG~~~i~l 94 (172)
+||.|+|.|.|.+.+- ...+++.|||.|.- + .|+|+|.+.||+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999876 56799999997652 2 378999999999
Q ss_pred ccchh
Q 048685 95 KPYIA 99 (172)
Q Consensus 95 ~~l~~ 99 (172)
.++-.
T Consensus 268 ~EiP~ 272 (1103)
T KOG1328|consen 268 AEIPP 272 (1103)
T ss_pred hcCCc
Confidence 98854
No 117
>PLN02352 phospholipase D epsilon
Probab=99.04 E-value=4.3e-09 Score=89.06 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=90.3
Q ss_pred cccccccceEEEEEEEEeecCCCC----C-C-CCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCC-CcEEE
Q 048685 2 SRSVESMLGLLKIRVKRGINLAVR----D-A-LSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPN-LPVHL 73 (172)
Q Consensus 2 ~~~~~~~~g~L~V~v~~a~~L~~~----~-~-g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~-~~L~i 73 (172)
.+..+-..|.|.++|.+|+-+... . . ...+||+.+.+++. ..+| .+..||.|+|+|.+.+.... ..+.|
T Consensus 2 ~~~~~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f 78 (758)
T PLN02352 2 EEKQKFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITI 78 (758)
T ss_pred cccccccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEE
Confidence 344556789999999999843321 1 1 12399999999875 4477 56679999999999999876 68999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEeccce---
Q 048685 74 TVYDKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNNVE--- 150 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~--- 150 (172)
+|.| ...+||.+.||+.++..+.. ..+.|+++-+..
T Consensus 79 ~vk~-----~~~~ig~~~~p~~~~~~g~~------------------------------------~~~~~~~~~~~~~~p 117 (758)
T PLN02352 79 TLKT-----KCSILGRFHIQAHQIVTEAS------------------------------------FINGFFPLIMENGKP 117 (758)
T ss_pred EEec-----CCeEEEEEEEEHHHhhCCCc------------------------------------ccceEEEcccCCCCC
Confidence 9988 25799999999999877422 114455554331
Q ss_pred -e-eeEEEEEEEEEcCCCC
Q 048685 151 -C-GEVEIQLDWVEVPGCK 167 (172)
Q Consensus 151 -~-G~l~l~l~~~~~~~~~ 167 (172)
. .+|+++++|+|+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 118 NPELKLRFMLWFRPAELEP 136 (758)
T ss_pred CCCCEEEEEEEEEEhhhCc
Confidence 2 4999999999998763
No 118
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.96 E-value=3.9e-10 Score=96.10 Aligned_cols=91 Identities=30% Similarity=0.466 Sum_probs=81.2
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCCCCC
Q 048685 9 LGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQK--MKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTFSVD 84 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~~~d 84 (172)
...++|++++|.+|.+.| +|.+|||+++.+|++. -++..+.+++||+|++-|.+.+..+ +..|+++|||+|..+.|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 345779999999999999 9999999999999766 5778899999999999999998887 66789999999999999
Q ss_pred CeeEEEEEeCccchh
Q 048685 85 DKMGEANIDIKPYIA 99 (172)
Q Consensus 85 ~~lG~~~i~l~~l~~ 99 (172)
+.+|+..++|++-..
T Consensus 692 ~~iget~iDLEnR~~ 706 (1105)
T KOG1326|consen 692 EKIGETTIDLENRWL 706 (1105)
T ss_pred chhhceehhhhhccc
Confidence 999999999987543
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.87 E-value=5.1e-09 Score=86.72 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=77.3
Q ss_pred EEEEEEeecCCCCCCCCCCcEEEEEECCE----EEEeeeecCCCCCeEeeEEEEEeeCC----------------CCcEE
Q 048685 13 KIRVKRGINLAVRDALSSDPYVVITMGKQ----KMKTHVINSNCNPVWNCDLTLPIRDP----------------NLPVH 72 (172)
Q Consensus 13 ~V~v~~a~~L~~~~~g~~dpyv~v~~~~~----~~~T~~~~~~~~P~w~e~f~f~v~~~----------------~~~L~ 72 (172)
.+.+++++++.+..++.+|||+++...+. ..+|++.+++.+|.|+|.|.|.+..+ -..|.
T Consensus 134 ~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ir 213 (800)
T KOG2059|consen 134 VCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIR 213 (800)
T ss_pred hhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEE
Confidence 34445666666666677999999997643 35999999999999999999998644 12478
Q ss_pred EEEEe-cCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCc
Q 048685 73 LTVYD-KDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRI 122 (172)
Q Consensus 73 i~v~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (172)
+++|+ .+....+.|+|++.+++..+...... ..|+.++|...
T Consensus 214 v~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p--------~~W~~Lqp~~~ 256 (800)
T KOG2059|consen 214 VDLWNDLNLVINDVFLGEVRVPVDVLRQKSSP--------AAWYYLQPRPN 256 (800)
T ss_pred EeeccchhhhhhhhhceeEEeehhhhhhccCc--------cceEEEecCCC
Confidence 99999 55556689999999999988743222 56788887744
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.59 E-value=4.6e-08 Score=85.12 Aligned_cols=92 Identities=24% Similarity=0.243 Sum_probs=77.1
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEee-CC---CCcEEEEEEec
Q 048685 9 LGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIR-DP---NLPVHLTVYDK 78 (172)
Q Consensus 9 ~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~-~~---~~~L~i~v~d~ 78 (172)
.|+|.|-|..|++|+-.. ...+||||+.++. ..+.+|++++++.||.|||...+.-. .. .+.|+++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999995544 6689999999985 25679999999999999999887722 21 46799999999
Q ss_pred CCCCCCCeeEEEEEeCccchhh
Q 048685 79 DTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
+.+..+.++|.+.|+|..+--.
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh
Confidence 9998899999999999887543
No 121
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.7e-07 Score=71.85 Aligned_cols=91 Identities=27% Similarity=0.261 Sum_probs=75.6
Q ss_pred ccccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEE
Q 048685 3 RSVESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHL 73 (172)
Q Consensus 3 ~~~~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i 73 (172)
..++.....|.|+++++..|..+| +|.+|||+..++. .-+.+|.+.+++.+|.|+++|.|.+... ...+.|
T Consensus 226 l~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~l 305 (362)
T KOG1013|consen 226 LAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVAL 305 (362)
T ss_pred eccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEE
Confidence 345566777999999999999999 8999999999975 2466899999999999999999998865 356899
Q ss_pred EEEecCCCCCCCeeEEEEEe
Q 048685 74 TVYDKDTFSVDDKMGEANID 93 (172)
Q Consensus 74 ~v~d~~~~~~d~~lG~~~i~ 93 (172)
.+||.+.-+..+++|-....
T Consensus 306 svgd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 306 SVGDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred eecccCCCcCccCCCccccc
Confidence 99999887677788765543
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.46 E-value=3.9e-07 Score=76.67 Aligned_cols=93 Identities=18% Similarity=0.395 Sum_probs=77.4
Q ss_pred cccccceEEEEEEEEeecCCCCCCCCCCcEEE-EEECCEEEEeeeecCCCCCeEeeEEEEEeeCCC-CcEEEEEEecCCC
Q 048685 4 SVESMLGLLKIRVKRGINLAVRDALSSDPYVV-ITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPN-LPVHLTVYDKDTF 81 (172)
Q Consensus 4 ~~~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~-v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~-~~L~i~v~d~~~~ 81 (172)
++++..|.+.+++++|+ ++ ..|+|.. +.+|.+.++|.+.++|.||+||+...|.+.... ...++.|||.+.+
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ecccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 56788999999999987 32 3578655 668899999999999999999999999887542 2369999999999
Q ss_pred CCCCeeEEEEEeCccchhhhc
Q 048685 82 SVDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~ 102 (172)
++++++|.+.++|.++.....
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CHHHhhhheeecHhhccHHHH
Confidence 999999999998888766533
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=9.8e-07 Score=73.28 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CEEEEeeeecCCCCCeEeeEEEEEeeCCC----CcEEEEEEec
Q 048685 10 GLLKIRVKRGINLAVRDALSSDPYVVITMG-------KQKMKTHVINSNCNPVWNCDLTLPIRDPN----LPVHLTVYDK 78 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-------~~~~~T~~~~~~~~P~w~e~f~f~v~~~~----~~L~i~v~d~ 78 (172)
..++|.|+.|.+|.....|.-.||+.+.+- ++++.|++..++-.|.+||+|+|.+.+.. -.|.+.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 457888999999988777888999999973 35678889999999999999999987653 3589999998
Q ss_pred CCCCCCCeeEEEEEeCccchhhhcc
Q 048685 79 DTFSVDDKMGEANIDIKPYIACLKM 103 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~~ 103 (172)
.-...|..+|-+.++|.++...+..
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~ 1229 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSC 1229 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCce
Confidence 8777788999999999999876443
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.2e-07 Score=72.61 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=78.6
Q ss_pred cccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEee--CC--CCcEEEEE
Q 048685 6 ESMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIR--DP--NLPVHLTV 75 (172)
Q Consensus 6 ~~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~--~~--~~~L~i~v 75 (172)
......+.+++.+|.+|.+++ .+..|||++..++. .+.+|++..++.||.|+|....... .. .+.+.+.+
T Consensus 89 ~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~v 168 (362)
T KOG1013|consen 89 DSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVV 168 (362)
T ss_pred hhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheee
Confidence 344567889999999999999 89999999999862 4578899999999999998766532 22 35678899
Q ss_pred EecCCCCCCCeeEEEEEeCccchhhh
Q 048685 76 YDKDTFSVDDKMGEANIDIKPYIACL 101 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 101 (172)
.|.+.+...+++|+..+++..+....
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred ccCcccccccCcccchhhhhccChhh
Confidence 99999988899999999888876543
No 125
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.11 E-value=4.2e-06 Score=52.46 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=66.8
Q ss_pred EEEEEEeecCCCCC-CC-CCCcEEEEEE--C-CEEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCCCC
Q 048685 13 KIRVKRGINLAVRD-AL-SSDPYVVITM--G-KQKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFSVD 84 (172)
Q Consensus 13 ~V~v~~a~~L~~~~-~g-~~dpyv~v~~--~-~~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~~d 84 (172)
-++++.++||.-.. .| .+..|++--+ . ....+|+......||.|+|+|.|.+... +-.|-+.|+. .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 37889999998766 33 5556776443 3 3577899888999999999999998643 4568899988 45577
Q ss_pred CeeEEEEEeCccchhh
Q 048685 85 DKMGEANIDIKPYIAC 100 (172)
Q Consensus 85 ~~lG~~~i~l~~l~~~ 100 (172)
+.+|.+.+.++++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988664
No 126
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=2.1e-06 Score=66.91 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=78.3
Q ss_pred ccceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEE-ec
Q 048685 7 SMLGLLKIRVKRGINLAVRD--ALSSDPYVVITMGK-----QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVY-DK 78 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~--~g~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~-d~ 78 (172)
+..|.|.|.|++|++|..+. ...++|||+|++.. .+.+|+...++..|.+.....|.-..+...|.+++| |.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 55789999999999999877 33789999999752 456889999999999888888888878889999999 46
Q ss_pred CCCCCCCeeEEEEEeCccchhh
Q 048685 79 DTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
..+..+.|+|.+.+-+.++-..
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred cccchHHHhhHHHHHhhhhccc
Confidence 6676778999999888887543
No 127
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.86 E-value=3e-05 Score=63.55 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=67.8
Q ss_pred EEEeecCCCCC-CCCCCcEEEEEEC------CEEEEeeeecCCCCCeEeeEEEEEee-----CCCCcEEEEEEecCCCCC
Q 048685 16 VKRGINLAVRD-ALSSDPYVVITMG------KQKMKTHVINSNCNPVWNCDLTLPIR-----DPNLPVHLTVYDKDTFSV 83 (172)
Q Consensus 16 v~~a~~L~~~~-~g~~dpyv~v~~~------~~~~~T~~~~~~~~P~w~e~f~f~v~-----~~~~~L~i~v~d~~~~~~ 83 (172)
.++|++|.+++ ++++|||..+.-- ...++|.+++++++|.|.+ |.+... +++..+.+.+||.+..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 35678898999 8999999988732 2457999999999999998 555432 335789999999999999
Q ss_pred CCeeEEEEEeCccchh
Q 048685 84 DDKMGEANIDIKPYIA 99 (172)
Q Consensus 84 d~~lG~~~i~l~~l~~ 99 (172)
++++|.+..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999888864
No 128
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.77 E-value=3.7e-06 Score=72.51 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=74.3
Q ss_pred ccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEee---CC------C-CcEEEEE
Q 048685 7 SMLGLLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIR---DP------N-LPVHLTV 75 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~---~~------~-~~L~i~v 75 (172)
.....+++++.+|+.|...+ .+.+|||+.+.+-++.+.|.++.+++||.|+....|.-. .. + ..+.+++
T Consensus 203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 34556778888999999888 789999999999999999999999999999999888621 11 1 2368999
Q ss_pred EecCCCCCCCeeEEEEEeCccc
Q 048685 76 YDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 76 ~d~~~~~~d~~lG~~~i~l~~l 97 (172)
||.+..+.++++|+......-+
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVM 304 (1105)
T ss_pred ehhhhhchHHhhcccccceEEE
Confidence 9999999999999976654433
No 129
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.70 E-value=6.5e-05 Score=64.53 Aligned_cols=88 Identities=19% Similarity=0.363 Sum_probs=68.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CEEEEeeeecC-CCCCeEeeE-EEEE-eeCC-CCcEEEEEE
Q 048685 8 MLGLLKIRVKRGINLAVRDALSSDPYVVITMG-------KQKMKTHVINS-NCNPVWNCD-LTLP-IRDP-NLPVHLTVY 76 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-------~~~~~T~~~~~-~~~P~w~e~-f~f~-v~~~-~~~L~i~v~ 76 (172)
..+.+.|+|++|+-|..+..| .||.|.+- ...++|++..+ +.||+|+|. |.|. |--| -..|+|.||
T Consensus 701 IA~t~sV~VISgqFLSdrkvg---tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKVG---TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EEeeEEEEEEeeeeccccccC---ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357799999999999877644 79999974 35678888876 599999965 7776 3334 456999999
Q ss_pred ecCCCCCCCeeEEEEEeCccchhhhc
Q 048685 77 DKDTFSVDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 77 d~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (172)
+.+ ..++|+-.+|+..+..+..
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred ccC----CceeeeeccchhcccCcce
Confidence 976 5799999999998866533
No 130
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.65 E-value=0.0014 Score=45.87 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=69.2
Q ss_pred cccceEEEEEEEEeecCCCCCC---CCCCcEEE--EEECCEEEEeeeecCCCCCeEeeEEEEEeeCCC------------
Q 048685 6 ESMLGLLKIRVKRGINLAVRDA---LSSDPYVV--ITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPN------------ 68 (172)
Q Consensus 6 ~~~~g~L~V~v~~a~~L~~~~~---g~~dpyv~--v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~------------ 68 (172)
+....-|.+.|..++-....-. +..+.... +.+++++++|+.+..+.+|.|+|.|.|++....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3445568899998875433221 33344444 446799999999999999999999999986431
Q ss_pred --CcEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 69 --LPVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 69 --~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
..+++.+..-+..+...++|.-.++-..++..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 35788888777666668899988888877765
No 131
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.65 E-value=0.0002 Score=48.28 Aligned_cols=89 Identities=20% Similarity=0.367 Sum_probs=67.5
Q ss_pred EEEEEEEeecCCCCC-------------CC-CCCcEEEEEEC----CEEEEeeeecCCCCCeEeeEEEEEeeC-----C-
Q 048685 12 LKIRVKRGINLAVRD-------------AL-SSDPYVVITMG----KQKMKTHVINSNCNPVWNCDLTLPIRD-----P- 67 (172)
Q Consensus 12 L~V~v~~a~~L~~~~-------------~g-~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~v~~-----~- 67 (172)
|.|.|.+|.+|+..- .+ .-|+||++.+. +...+|+++.++--|.|+..++|.+.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888887421 11 24899999964 578899999999999999999998751 1
Q ss_pred ----------CCcEEEEEEecCCC----------CCCCeeEEEEEeCccchhh
Q 048685 68 ----------NLPVHLTVYDKDTF----------SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 68 ----------~~~L~i~v~d~~~~----------~~d~~lG~~~i~l~~l~~~ 100 (172)
...+.++||+...- .+|-+||.+.||+.+++..
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 23589999986542 2455899999999999875
No 132
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.41 E-value=0.00013 Score=57.93 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=69.3
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCC------------CCcEE
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDP------------NLPVH 72 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~------------~~~L~ 72 (172)
.|.+.|+++++++..+ ....|.|+++.+. .++.+|.+++++.+|.|+|.|.+.+... ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 3566777888776554 3345788888864 3677899999999999999999988752 13489
Q ss_pred EEEEecCCC-CCCCeeEEEEEeCccchhh
Q 048685 73 LTVYDKDTF-SVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 73 i~v~d~~~~-~~d~~lG~~~i~l~~l~~~ 100 (172)
|++|++..| ..|.++|.+.+.|..|...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~ 476 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENM 476 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcc
Confidence 999998765 4678999999999877654
No 133
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.31 E-value=0.0044 Score=43.68 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=62.6
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEE
Q 048685 7 SMLGLLKIRVKRGINLAVRDALSSDPYVVITM--GKQK----MKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVY 76 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~ 76 (172)
+....++|+|+++.++...+ .++-|+.+.+ |++. ..|+.+.. .++.|||..+|++.-. +..|.|++|
T Consensus 5 d~~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 5 KINSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred eCCCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence 34567899999999987653 4578888764 4433 24444443 6799999999987533 456999999
Q ss_pred ecCCCC----CCCeeEEEEEeCccchh
Q 048685 77 DKDTFS----VDDKMGEANIDIKPYIA 99 (172)
Q Consensus 77 d~~~~~----~d~~lG~~~i~l~~l~~ 99 (172)
+..... ....+|.+.++|-+...
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~~~ 108 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDYTD 108 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECCCC
Confidence 865321 22469999999887543
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.22 E-value=0.0025 Score=44.72 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=63.5
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCE----EEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEE
Q 048685 7 SMLGLLKIRVKRGINLAVRDALSSDPYVVITM--GKQ----KMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVY 76 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~ 76 (172)
+....++|++....++...+....+-|+.+.+ |++ ...|.....+.++.|||...|.+... +..|.+++|
T Consensus 5 di~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 5 DINFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred ecCCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 44567888888888876533345667777754 443 22444443346899999999986532 556999999
Q ss_pred ecCCCC--CCCeeEEEEEeCccch
Q 048685 77 DKDTFS--VDDKMGEANIDIKPYI 98 (172)
Q Consensus 77 d~~~~~--~d~~lG~~~i~l~~l~ 98 (172)
+....+ .+..+|.+.++|-+..
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEccc
Confidence 976543 4578999999988754
No 135
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.21 E-value=0.0051 Score=38.93 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred CCCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccchh
Q 048685 28 LSSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 28 g~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
|..+..+++.+++. ..+|.-... .+..|++.|.+.+. ....|.|.||-+|- ..+.|...+.|++...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDERH 74 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhcc
Confidence 45678899999874 445554333 57899999999988 46789999998763 4678888888888433
No 136
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.20 E-value=0.0057 Score=43.78 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=63.8
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCE----EEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEE
Q 048685 7 SMLGLLKIRVKRGINLAVRDALSSDPYVVITM--GKQ----KMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVY 76 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~ 76 (172)
+....++|+|..+.++...+ ...+-|+.+.+ |++ ...|+...-+.++.|+|.+.|++.-. +..|.|+||
T Consensus 5 ~~~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 5 DIEEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred ccCCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 34557899999999998622 34566777653 543 33565555457799999999987532 456999999
Q ss_pred ecCCCC----------------CCCeeEEEEEeCccchh
Q 048685 77 DKDTFS----------------VDDKMGEANIDIKPYIA 99 (172)
Q Consensus 77 d~~~~~----------------~d~~lG~~~i~l~~l~~ 99 (172)
+..... .+..+|.+.++|-+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~ 122 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG 122 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcccc
Confidence 865321 24689999999887543
No 137
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.11 E-value=0.0071 Score=47.76 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=70.3
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC--------CCcEEEEEEecC-CCC
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP--------NLPVHLTVYDKD-TFS 82 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~--------~~~L~i~v~d~~-~~~ 82 (172)
+.|.|++|++.+... ...-.+...+++....|..+..+..|.|+..+..++... ...++++||..+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 679999999998653 334577788999999999999999999999998887532 457999999987 556
Q ss_pred CCCeeEEEEEeCccc
Q 048685 83 VDDKMGEANIDIKPY 97 (172)
Q Consensus 83 ~d~~lG~~~i~l~~l 97 (172)
..+.+|.+.++|...
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 778999999999988
No 138
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.08 E-value=0.046 Score=37.47 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=81.4
Q ss_pred cccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCE---EEEeeeecC-CCCCeEeeEEEEEeeCC---------CCcEE
Q 048685 6 ESMLGLLKIRVKRGINLAVRDALSSDPYVVITMGKQ---KMKTHVINS-NCNPVWNCDLTLPIRDP---------NLPVH 72 (172)
Q Consensus 6 ~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~---~~~T~~~~~-~~~P~w~e~f~f~v~~~---------~~~L~ 72 (172)
.+....+.+.|.+..+++. .....|++...++. ...|..... +..-.|++.|.+.+... ...+.
T Consensus 3 ~~~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 3 KAVKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred ceeeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 3456678899999998876 23445666666654 344544433 45678999999886421 23488
Q ss_pred EEEEecCCCCCCCeeEEEEEeCccchhhhccCCccCCCceEEEEEeeCCcceeccCCceEecCCeeeEeEeEEecc--ce
Q 048685 73 LTVYDKDTFSVDDKMGEANIDIKPYIACLKMGLENLPNGCAIKKIQPTRINCLLDESSIIWNNGKITQDMSLRLNN--VE 150 (172)
Q Consensus 73 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~ 150 (172)
|.|+....-++...+|.+.|+|.+....... .....+.|.. ..
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~-----------------------------------~~~~~~~l~~~~~~ 124 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEE-----------------------------------PITVRLLLKKCKKS 124 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCC-----------------------------------cEEEEEeCccCCCC
Confidence 9998874333336899999999999874211 0012222332 24
Q ss_pred eeeEEEEEEEEEcCCCCc
Q 048685 151 CGEVEIQLDWVEVPGCKG 168 (172)
Q Consensus 151 ~G~l~l~l~~~~~~~~~~ 168 (172)
...|++.+++..+.+.++
T Consensus 125 ~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 125 NATLSISISLSELREDPD 142 (143)
T ss_pred CcEEEEEEEEEECccCCC
Confidence 568999999988887765
No 139
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.00 E-value=0.0013 Score=50.71 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=67.5
Q ss_pred ccccceEEEEEEEEeecCCCCC--CC-CCCcEEEEEECCE-EEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCC
Q 048685 5 VESMLGLLKIRVKRGINLAVRD--AL-SSDPYVVITMGKQ-KMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDT 80 (172)
Q Consensus 5 ~~~~~g~L~V~v~~a~~L~~~~--~g-~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~ 80 (172)
.....|.|.+++..+++|.... .| .-+-||++..+.+ +.+|.+......-.|.|+|..++.+ .+.+.+-||.|+.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 3466799999999999998765 23 6688999998854 5677776666777899999988773 4678888888887
Q ss_pred CCCCCeeEEEEEeCccc
Q 048685 81 FSVDDKMGEANIDIKPY 97 (172)
Q Consensus 81 ~~~d~~lG~~~i~l~~l 97 (172)
-.++++.-...+.+..+
T Consensus 125 q~RHKLC~~g~l~~~~v 141 (442)
T KOG1452|consen 125 QRRHKLCHLGLLEAFVV 141 (442)
T ss_pred hhhccccccchhhhhhh
Confidence 76777654434444433
No 140
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.96 E-value=0.0039 Score=44.00 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCCCcEEEEEE--CCE----EEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecCCCCCCCeeEEEEEeCccc
Q 048685 28 LSSDPYVVITM--GKQ----KMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 28 g~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l 97 (172)
..++-||.+.+ +++ ...|....-+..+.|||...|++.-. +..|.|+||+....+....+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35778888865 443 23555555567789999999997643 456999999987655667999999998875
No 141
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.65 E-value=0.025 Score=40.40 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=64.2
Q ss_pred ccceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CCEE----EEeeeec--C--CCCCeEeeEEEEEeeCC----CCcE
Q 048685 7 SMLGLLKIRVKRGINLAVRD-ALSSDPYVVITM--GKQK----MKTHVIN--S--NCNPVWNCDLTLPIRDP----NLPV 71 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~-~g~~dpyv~v~~--~~~~----~~T~~~~--~--~~~P~w~e~f~f~v~~~----~~~L 71 (172)
+....+.|+|.++.+++... ....+-|+.+.+ |++. ..|+... + ...+.|||...|.+.-. +..|
T Consensus 5 ~v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL 84 (171)
T cd04012 5 TVTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRL 84 (171)
T ss_pred cccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEE
Confidence 34567899999999998765 345778888764 5433 2443221 1 23577999999987532 4569
Q ss_pred EEEEEecCCCC---------CCCeeEEEEEeCccchh
Q 048685 72 HLTVYDKDTFS---------VDDKMGEANIDIKPYIA 99 (172)
Q Consensus 72 ~i~v~d~~~~~---------~d~~lG~~~i~l~~l~~ 99 (172)
.|++|+..... .+..+|.+.++|-+...
T Consensus 85 ~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~ 121 (171)
T cd04012 85 VLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG 121 (171)
T ss_pred EEEEEEEecCCccccccccccceEEEEEeEeeEcchh
Confidence 99999866543 34689999999887543
No 142
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.38 E-value=0.072 Score=38.29 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=59.2
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCE---EEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEe
Q 048685 7 SMLGLLKIRVKRGINLAVRDALSSDPYVVITM--GKQ---KMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYD 77 (172)
Q Consensus 7 ~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~--~~~---~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d 77 (172)
+....++|+|.++..+..........||.+.+ |+. ..+|....-+.++.|||.+.|.+.-. +..|.|+||+
T Consensus 7 di~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 7 DCDRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred ecCCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 34456888888887443222333446666643 432 23566555667899999999987643 4569999998
Q ss_pred cCCCC----------------CCCeeEEEEEeCccchh
Q 048685 78 KDTFS----------------VDDKMGEANIDIKPYIA 99 (172)
Q Consensus 78 ~~~~~----------------~d~~lG~~~i~l~~l~~ 99 (172)
..... .+..||.+.+.|-+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~ 124 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF 124 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcCCC
Confidence 53211 24578888888877443
No 143
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.83 E-value=0.21 Score=36.25 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=41.5
Q ss_pred EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCCC--CCeeEEEEEeCc
Q 048685 41 QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFSV--DDKMGEANIDIK 95 (172)
Q Consensus 41 ~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~~--d~~lG~~~i~l~ 95 (172)
..++|.+...+.+|.|+|++.+.+... ...|.+++++.....+ ...+|.+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 457888899899999999999998754 3458888887543221 257899999884
No 144
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.33 E-value=0.21 Score=36.40 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=41.4
Q ss_pred EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCC-CC---CCeeEEEEEeCc
Q 048685 41 QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTF-SV---DDKMGEANIDIK 95 (172)
Q Consensus 41 ~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~-~~---d~~lG~~~i~l~ 95 (172)
..++|.+.....+|.|+|++.+.+... ...|.+++++.... .+ ...+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 467888888899999999999988754 44588998875432 12 246898888885
No 145
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.24 E-value=0.15 Score=35.14 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=40.1
Q ss_pred EeeeecCC-CCCeEeeEEEEEeeC---C-CCcEEEEEEecCCCCCC----CeeEEEEEeCccch
Q 048685 44 KTHVINSN-CNPVWNCDLTLPIRD---P-NLPVHLTVYDKDTFSVD----DKMGEANIDIKPYI 98 (172)
Q Consensus 44 ~T~~~~~~-~~P~w~e~f~f~v~~---~-~~~L~i~v~d~~~~~~d----~~lG~~~i~l~~l~ 98 (172)
.|....-+ .++.|+|.+.|.+.- | +..|.|+||+....... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 56656555 799999999998753 2 55699999997765444 68999999988763
No 146
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.18 E-value=0.1 Score=37.54 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=33.5
Q ss_pred EEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCCCC---CeeEEEEEeCcc
Q 048685 42 KMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFSVD---DKMGEANIDIKP 96 (172)
Q Consensus 42 ~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~~d---~~lG~~~i~l~~ 96 (172)
.+.|.+...+.+|.|+|+|.+.+... +..|.+++++...-.+. ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35677777889999999999998765 33588999986543211 689999999987
No 147
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.97 E-value=0.083 Score=43.91 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=50.1
Q ss_pred EEEeeeecCCCCCeEeeEEEEEeeCC-CCcEEEEEEecCCC----CCCCeeEEEEEeCccchhhhcc
Q 048685 42 KMKTHVINSNCNPVWNCDLTLPIRDP-NLPVHLTVYDKDTF----SVDDKMGEANIDIKPYIACLKM 103 (172)
Q Consensus 42 ~~~T~~~~~~~~P~w~e~f~f~v~~~-~~~L~i~v~d~~~~----~~d~~lG~~~i~l~~l~~~~~~ 103 (172)
..+|.++.+.+||.|.+.|.+....+ .+.|+++++|.+.. ..++|+|++...+..+......
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~ 108 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL 108 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence 34889999999999999998887765 45689999987643 4568999999999998875444
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.96 E-value=0.22 Score=32.17 Aligned_cols=69 Identities=25% Similarity=0.257 Sum_probs=45.8
Q ss_pred EEEEEEEEeecCCCCCC-CCCCcEEEEEE--CCE----EEEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecC
Q 048685 11 LLKIRVKRGINLAVRDA-LSSDPYVVITM--GKQ----KMKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKD 79 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~~-g~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~ 79 (172)
.+.+.+....+...... ...+-|+.+.+ |++ ...|..+.-...+.|||...|++.-. +..|.+++|+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 36677777777665542 23478888865 443 33555554456689999999986533 456999999864
No 149
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.54 E-value=1.1 Score=32.12 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=38.4
Q ss_pred EEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCC-----CCCCeeEEEEEeCcc
Q 048685 43 MKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTF-----SVDDKMGEANIDIKP 96 (172)
Q Consensus 43 ~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~-----~~d~~lG~~~i~l~~ 96 (172)
+.|-+..+ .+|.|+|++.+.+... ...|.+++++...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998643 34588999986532 235689999999876
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.49 E-value=1.9 Score=30.58 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCCcEEEEEECCEE-EEeeeecC--CCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccchh
Q 048685 29 SSDPYVVITMGKQK-MKTHVINS--NCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 29 ~~dpyv~v~~~~~~-~~T~~~~~--~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 99 (172)
...-|+++.+.++. .+|+...- ...-.|++.|.+.+..--+.|.++||.... ..+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 45679999998654 45544333 233456888999987656789999999987 478999999999876654
No 151
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.98 E-value=0.86 Score=32.82 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=41.8
Q ss_pred EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCCC------CCCeeEEEEEeCcc
Q 048685 41 QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTFS------VDDKMGEANIDIKP 96 (172)
Q Consensus 41 ~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~~------~d~~lG~~~i~l~~ 96 (172)
..+.|.+...+.+|.|+|++.+.+... ...|.|++++.+--. ....+|-+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456788888999999999999988754 345888888844321 13568999998764
No 152
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.60 E-value=1.2 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=42.3
Q ss_pred EEEEeeeecCCCCCeEeeEEEEEeeCC---CCcEEEEEEecCCC---------CCCCeeEEEEEeCcc
Q 048685 41 QKMKTHVINSNCNPVWNCDLTLPIRDP---NLPVHLTVYDKDTF---------SVDDKMGEANIDIKP 96 (172)
Q Consensus 41 ~~~~T~~~~~~~~P~w~e~f~f~v~~~---~~~L~i~v~d~~~~---------~~d~~lG~~~i~l~~ 96 (172)
....|.+...+.+|.|.|++.+.+... ...|.|++++.+-. .....+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 466788888899999999999888754 34588999986521 113568999999865
No 153
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=91.48 E-value=2.8 Score=27.54 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=36.2
Q ss_pred EEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCC--------CCcEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 33 YVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDP--------NLPVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 33 yv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~--------~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
||.+.+-. +.+.|.++. +.+|.++-+-.|.+... ...+.++++..-.. ..+.+|.+.+++..+.+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcC
Confidence 56666544 455666665 78999999888888744 35699999987643 467899999999999864
No 154
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=88.66 E-value=6.8 Score=27.76 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=52.1
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC----------CE-EEEeeeecC-----CCCCeEeeEEEEEeeCCC----CcE
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMG----------KQ-KMKTHVINS-----NCNPVWNCDLTLPIRDPN----LPV 71 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~----------~~-~~~T~~~~~-----~~~P~w~e~f~f~v~~~~----~~L 71 (172)
+.=.|..|.+. ...+-||+..+. .. ...|.+... ...-.|+.-|.+.+.... ..|
T Consensus 4 v~G~I~~a~~f-----~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGF-----EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECC-----CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 33456778765 345778887763 13 455555532 334678877776655332 469
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCc
Q 048685 72 HLTVYDKDTFSVDDKMGEANIDIK 95 (172)
Q Consensus 72 ~i~v~d~~~~~~d~~lG~~~i~l~ 95 (172)
.++||..|..+++...|-..+.|-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999999888877666553
No 155
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=85.93 E-value=16 Score=29.22 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=55.3
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCC--eEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEE
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNP--VWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGE 89 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P--~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~ 89 (172)
|.|.|.+-.++ +-....|+.+..|+..++|..+.-+..- .-.+.....+..-+.+|++.+|-.... +...+|.
T Consensus 60 LLVeI~EI~~i----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgd 134 (508)
T PTZ00447 60 LLVKINEIFNI----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQ 134 (508)
T ss_pred EEEEehhhhcc----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEE
Confidence 44554444333 2345779999999988888665444222 223445555666688999999998876 5588999
Q ss_pred EEEeCccch
Q 048685 90 ANIDIKPYI 98 (172)
Q Consensus 90 ~~i~l~~l~ 98 (172)
+.+.++.=.
T Consensus 135 I~InIn~dI 143 (508)
T PTZ00447 135 IKIDINASV 143 (508)
T ss_pred EEecccHHH
Confidence 999887633
No 156
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.15 E-value=0.71 Score=39.63 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=46.6
Q ss_pred CCCcEEEEEECC-EEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccc
Q 048685 29 SSDPYVVITMGK-QKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPY 97 (172)
Q Consensus 29 ~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l 97 (172)
..+||+.+.+.- +...+.+...+..|.|+++|.+.+. ....+.|.++.......+.+...+.+..+++
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 458898888863 3345556777899999999999966 4677888999876554444444444433333
No 157
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=72.85 E-value=4.4 Score=36.06 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=56.4
Q ss_pred CCcEEEEEECCE-EEEeeeecCC-CCCeEeeEEEEEeeCCCCcEEEEEEecCCCCCCCeeEEEEEeCccchhh
Q 048685 30 SDPYVVITMGKQ-KMKTHVINSN-CNPVWNCDLTLPIRDPNLPVHLTVYDKDTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 30 ~dpyv~v~~~~~-~~~T~~~~~~-~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.++|+.+.+... -.+|....+. .+|.|.+.|...+......+.+.+-+.+..+....+|.+.++...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 478888888753 3466666676 8999999998888877778889988887776568899999998888764
No 158
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=70.21 E-value=2.2 Score=37.96 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=57.8
Q ss_pred cccceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCC
Q 048685 6 ESMLGLLKIRVKRGINLAVRDALSSDPYVVITMG-----KQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDT 80 (172)
Q Consensus 6 ~~~~g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~ 80 (172)
....|.+.+.+.+|..+. ...+.||..... ..+.+|.++.++..|.||++++..+.. ...+.+.+++++.
T Consensus 755 pl~ygflh~~vhsat~lk----qs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLK----QSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeeccccccc----cccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhcccc
Confidence 455677888888888775 345678887654 367789999999999999999988753 3344455554332
Q ss_pred ----------CCCCCeeEEEEEeCcc
Q 048685 81 ----------FSVDDKMGEANIDIKP 96 (172)
Q Consensus 81 ----------~~~d~~lG~~~i~l~~ 96 (172)
...+...|+..+.+..
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCc
Confidence 2344455665555443
No 159
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=67.43 E-value=61 Score=29.44 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=52.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC----C----EEEEeeeecCCCCCeEeeEEEEEeeCCC----CcEEEEEEe
Q 048685 10 GLLKIRVKRGINLAVRDALSSDPYVVITMG----K----QKMKTHVINSNCNPVWNCDLTLPIRDPN----LPVHLTVYD 77 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~----~----~~~~T~~~~~~~~P~w~e~f~f~v~~~~----~~L~i~v~d 77 (172)
..++|+++++.++... ...|-+|.|+.+ . ....|.-+..+.+|.||+...|++.-.+ ..|-+.||.
T Consensus 343 ~~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 4567787777655322 233455555543 3 2345555555789999999999876443 346677765
Q ss_pred cC----------------CCCCCCeeEEEEEeCccchh
Q 048685 78 KD----------------TFSVDDKMGEANIDIKPYIA 99 (172)
Q Consensus 78 ~~----------------~~~~d~~lG~~~i~l~~l~~ 99 (172)
.. .-+.+-.+|.+.+.|-+...
T Consensus 421 v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd 458 (1076)
T KOG0904|consen 421 VKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKD 458 (1076)
T ss_pred eechhccccccchhhhhccccccCceEEEeeeeeechh
Confidence 31 11233456777776666554
No 160
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.39 E-value=6.7 Score=33.92 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCCcEEEEEEC--CEE----EEeeeecCCCCCeEeeEEEEEeeCC----CCcEEEEEEecCCCCCCCeeEEEEEeCcc
Q 048685 29 SSDPYVVITMG--KQK----MKTHVINSNCNPVWNCDLTLPIRDP----NLPVHLTVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 29 ~~dpyv~v~~~--~~~----~~T~~~~~~~~P~w~e~f~f~v~~~----~~~L~i~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
++|.|+....- +.. .+|+.+.-...-.|||..++.+... +..|.|++|+...-..-.++|.+++.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 45556555432 222 2344333333345999999998755 45699999998776677789988877654
No 161
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=61.29 E-value=93 Score=25.70 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCCcEEEEEECCEEEEeeeec---CC-CCC-e---EeeEEEEEee------CC------CCcEEEEEEecCC-----C-C
Q 048685 29 SSDPYVVITMGKQKMKTHVIN---SN-CNP-V---WNCDLTLPIR------DP------NLPVHLTVYDKDT-----F-S 82 (172)
Q Consensus 29 ~~dpyv~v~~~~~~~~T~~~~---~~-~~P-~---w~e~f~f~v~------~~------~~~L~i~v~d~~~-----~-~ 82 (172)
.+.+||+|++.+-..+|..+. .+ .+| . --..|+++-. .+ ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 456799999986444443332 11 121 1 1133444311 11 1459999998432 2 3
Q ss_pred CCCeeEEEEEeCc
Q 048685 83 VDDKMGEANIDIK 95 (172)
Q Consensus 83 ~d~~lG~~~i~l~ 95 (172)
...+||.+.++|+
T Consensus 115 ~~klLG~v~vpld 127 (460)
T PF06219_consen 115 SGKLLGKVRVPLD 127 (460)
T ss_pred cceEEEEEEEEec
Confidence 5679999999987
No 162
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=60.57 E-value=53 Score=22.67 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCC-------------CCcEEEEEEec
Q 048685 12 LKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDP-------------NLPVHLTVYDK 78 (172)
Q Consensus 12 L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~-------------~~~L~i~v~d~ 78 (172)
|.++-+.|-|.--. .+.|.|..+++-++.++|+.....--=.++|+|.|+-..+ .+.+.++++..
T Consensus 4 L~i~aVTCPGv~L~--~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl 81 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC--DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQL 81 (140)
T ss_pred EEEEEEecCCeEeC--CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEE
Confidence 44554554443222 3568999999999999998775544445789999974322 35688899887
Q ss_pred CCCCCCCeeEEEEEeCccchhh
Q 048685 79 DTFSVDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~ 100 (172)
.... .+.|+...-.+.+++..
T Consensus 82 ~~~~-g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 82 VPPA-GEILAYYEENTRDFLFP 102 (140)
T ss_pred eCCC-CcEEEEEeccccceEcC
Confidence 6553 67888888888887654
No 163
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=55.99 E-value=1e+02 Score=24.64 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=61.6
Q ss_pred cceEEEEEEEEeecCCCCC-------CCCCCcEEEEEECCEEEEeeeecCCCCCeEe-eEEE-EEeeCC----------C
Q 048685 8 MLGLLKIRVKRGINLAVRD-------ALSSDPYVVITMGKQKMKTHVINSNCNPVWN-CDLT-LPIRDP----------N 68 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~-------~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~-e~f~-f~v~~~----------~ 68 (172)
-...|.|++..|.+|...- .+....|...++-+....|.......+|.|. +.-. +.+... .
T Consensus 190 d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~ 269 (340)
T PF12416_consen 190 DLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQI 269 (340)
T ss_pred ceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhC
Confidence 3577889999999987652 1235667777777778888888888888765 2233 554422 2
Q ss_pred CcEEEEEEecCCCCCCCeeEEEEEeCccchhhhc
Q 048685 69 LPVHLTVYDKDTFSVDDKMGEANIDIKPYIACLK 102 (172)
Q Consensus 69 ~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (172)
..|.|.++. .+..+|.+.+++..+.....
T Consensus 270 ~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~~ 298 (340)
T PF12416_consen 270 PKLQIHLCC-----GNQSLGSTSVPLQPLLPKDS 298 (340)
T ss_pred CCeEEEEee-----CCcEEEEEEEEhhhccCCCc
Confidence 346666665 35779999999999976533
No 164
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=55.32 E-value=0.75 Score=39.34 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=41.6
Q ss_pred cceEEEEEEEEeecCCCCC-----CCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEee
Q 048685 8 MLGLLKIRVKRGINLAVRD-----ALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIR 65 (172)
Q Consensus 8 ~~g~L~V~v~~a~~L~~~~-----~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~ 65 (172)
..|...++++.|.++++-- ....++++...++.+.++|+....+.+|+|||. .++..
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~ 339 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDS 339 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccc
Confidence 3344445556666665422 346789999999999999999999999999996 55443
No 165
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=48.19 E-value=81 Score=21.02 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=47.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEE-eeeecCCCCCeE-eeEEEEEeeC--C-CCcEEEEEEecCC-CCC
Q 048685 11 LLKIRVKRGINLAVRD-ALSSDPYVVITMGKQKMK-THVINSNCNPVW-NCDLTLPIRD--P-NLPVHLTVYDKDT-FSV 83 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~-~g~~dpyv~v~~~~~~~~-T~~~~~~~~P~w-~e~f~f~v~~--~-~~~L~i~v~d~~~-~~~ 83 (172)
.|.++-+.-.++|..+ .+.+.||++++-+..... +...... .... ...+.+.+.. + ...+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 3455555556666665 567899999998876653 3222111 1111 1223333331 1 4568899998763 334
Q ss_pred CCeeEEEEEeCccc
Q 048685 84 DDKMGEANIDIKPY 97 (172)
Q Consensus 84 d~~lG~~~i~l~~l 97 (172)
.+.+.++.+.-.-+
T Consensus 84 ~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 84 KEKMFRFWFNTGFI 97 (134)
T ss_dssp CEEEEEEEEEGGGS
T ss_pred cCeEEEEEEeeeee
Confidence 56777777664433
No 166
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=45.04 E-value=65 Score=28.18 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=56.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeEeeEEEEEeeCCCCcEEEEEEecCCC---CCCCee
Q 048685 11 LLKIRVKRGINLAVRDALSSDPYVVITMGKQKMKTHVINSNCNPVWNCDLTLPIRDPNLPVHLTVYDKDTF---SVDDKM 87 (172)
Q Consensus 11 ~L~V~v~~a~~L~~~~~g~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~v~~~~~~L~i~v~d~~~~---~~d~~l 87 (172)
.+.|.|.+-++|.... ...=.||.+.+.+.+.+|..... ..|.|..+=.|....+...+++.+|..... -.|.-+
T Consensus 342 smevvvmevqglksva-pnrivyctmevegeklqtdqaea-skp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA-PNRIVYCTMEVEGEKLQTDQAEA-SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccC-CCeeEEEEEEecccccccchhhh-cCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 3567788888887654 22346999999888888876543 479999888888877777778888765431 145667
Q ss_pred EEEEEe
Q 048685 88 GEANID 93 (172)
Q Consensus 88 G~~~i~ 93 (172)
|++.+.
T Consensus 420 grvil~ 425 (1218)
T KOG3543|consen 420 GRVILQ 425 (1218)
T ss_pred CeEEEe
Confidence 776654
No 167
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.13 E-value=89 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.6
Q ss_pred cEEEEEEecCCCCCCCeeEEEEE
Q 048685 70 PVHLTVYDKDTFSVDDKMGEANI 92 (172)
Q Consensus 70 ~L~i~v~d~~~~~~d~~lG~~~i 92 (172)
.|.++||..|++++.++.|-...
T Consensus 75 rl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred eeeeeeeecCcccceeecccceE
Confidence 58999999999998887765444
No 168
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=39.37 E-value=66 Score=19.55 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCCCCCCeeEEEEEe
Q 048685 68 NLPVHLTVYDKDTFSVDDKMGEANID 93 (172)
Q Consensus 68 ~~~L~i~v~d~~~~~~d~~lG~~~i~ 93 (172)
.....|++|+.+.+..|++|+.+..+
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 44567999999987789999987764
No 169
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=32.09 E-value=1.8e+02 Score=20.31 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=45.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CEEEEeeeecCC--CCCeEeeEEEEEeeC----CCCcEEEEEE
Q 048685 10 GLLKIRVKRGINLAVRDALSSDPYVVITMG-------KQKMKTHVINSN--CNPVWNCDLTLPIRD----PNLPVHLTVY 76 (172)
Q Consensus 10 g~L~V~v~~a~~L~~~~~g~~dpyv~v~~~-------~~~~~T~~~~~~--~~P~w~e~f~f~v~~----~~~~L~i~v~ 76 (172)
-.|.|.|.+.. |.+.. ...|||+.|++- ...+.|.+.... ..-.|+...+++..- ++..+.+++.
T Consensus 13 t~l~v~Iekig-lkda~-~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~k 90 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDAS-QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFK 90 (147)
T ss_dssp -EEEEEEEEEE--TTGG-G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEE
T ss_pred ceEEEEEEEEE-ECChH-HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEE
Confidence 34667766654 65443 457899999973 245566665332 223445444443221 1445788887
Q ss_pred ecCCCC-CCCeeEEEEEeCccchhh
Q 048685 77 DKDTFS-VDDKMGEANIDIKPYIAC 100 (172)
Q Consensus 77 d~~~~~-~d~~lG~~~i~l~~l~~~ 100 (172)
++..-. +-+..+.+.++++++..+
T Consensus 91 H~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 91 HYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEETTTTCEEEEEEEEEEGGG--SE
T ss_pred eeeccceeeeeeEEEEEEhhhccCC
Confidence 755432 334578889999888664
No 170
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.55 E-value=2.1e+02 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCCCCCeeEEEEEeCcc
Q 048685 69 LPVHLTVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 69 ~~L~i~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
..|.+.||..+.+++|.+.|-..+++--
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGMLHIPT 110 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeeeEecCc
Confidence 3589999999999999999888777643
No 171
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=24.09 E-value=79 Score=20.44 Aligned_cols=25 Identities=12% Similarity=0.417 Sum_probs=19.9
Q ss_pred CeEeeEEEEEeeCC------CCcEEEEEEec
Q 048685 54 PVWNCDLTLPIRDP------NLPVHLTVYDK 78 (172)
Q Consensus 54 P~w~e~f~f~v~~~------~~~L~i~v~d~ 78 (172)
..|.++|.+.+... ...|.+.+||.
T Consensus 52 v~W~~~~~i~vt~e~l~kl~~h~i~~kiwDt 82 (99)
T PF15084_consen 52 VSWTHTFNINVTKELLKKLYFHKITLKIWDT 82 (99)
T ss_pred EEEEEEEEeccCHHHHHHHHcCeEEEEEEcc
Confidence 67889999888754 35699999994
No 172
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=22.58 E-value=86 Score=18.99 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=19.8
Q ss_pred CCcEEE--EEEecCCCCCCCeeEEEEEeCcc
Q 048685 68 NLPVHL--TVYDKDTFSVDDKMGEANIDIKP 96 (172)
Q Consensus 68 ~~~L~i--~v~d~~~~~~d~~lG~~~i~l~~ 96 (172)
++.+++ -+||.+-..++.-+|-..+|+++
T Consensus 30 ~EpIKidvPv~d~~WIE~Hr~LGL~vvPv~~ 60 (78)
T PF10622_consen 30 DEPIKIDVPVYDEEWIEEHRKLGLIVVPVSE 60 (78)
T ss_pred CCCEEeeccccCHHHHHHHHhCCeEEEeccc
Confidence 555544 45776666677888988888764
Done!