BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048688
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 7/191 (3%)
Query: 47 TCDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIP-SAIFTTYTLKD 105
CD +T L++SG + G +P N SG +P + LK
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 106 VSFRENQLTGVFPSFIFNKS-SLQHLDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLH 163
+ N+ +G P + N S SL LD S N SG I N+C + L LYL N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
G IP TLSNC+ L L L++N SG +P +G+L+KL L L N L+GEIP+E +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 224 LEQMSLAENNL 234
LE + L N+L
Sbjct: 465 LETLILDFNDL 475
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Query: 48 CDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVS 107
C + + L + TG IP FN LSG+IPS++ + L+D+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
N L G P + +L+ L N L+GEIP+ + S+ L+++ LS N L G IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIP 504
Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
+ L IL L+ N FSG +P ++G+ L+ L L N G IP
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC 146
N +G IP + L + N L+G PS + + S L+ L N L GEIP +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 147 SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLG 206
+ L+ L L N L G IPS LSNCT L +SL+ N +G +PK IG L L L L
Sbjct: 461 Y-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 207 RNRLQGEIPREFGNLAELEQMSLAEN 232
N G IP E G+ L + L N
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 102 TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM 161
TL+++ + N TG P + N S L L S N LSG IP+++ SL L L L NM
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNM 450
Query: 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNL 221
L G IP L L L L +ND +G +P + N T L + L NRL GEIP+ G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 222 AELEQMSLAENNLQA 236
L + L+ N+
Sbjct: 511 ENLAILKLSNNSFSG 525
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 45/224 (20%)
Query: 58 LNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
+++S LTG IP N SG+IP+ + +L + N G
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 118 PSFIFNKSSLQHLDF---------------------------------SRNTLSGEIPAN 144
P+ +F +S +F N LS P N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 145 ICSSL------PFLD------YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK 192
I S + P D +L +S NML G IP + + YL IL+L +ND SG++P
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
++G+L L L L N+L G IP+ L L ++ L+ NNL
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC 146
N+LSG AI T LK ++ NQ G P SLQ+L + N +GEIP +
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLS 287
Query: 147 SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY-- 204
+ L L LS N +G +P +C+ L L+L+ N+FSG +P D L K+ GL
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVL 345
Query: 205 -LGRNRLQGEIPREFGNL-AELEQMSLAENNLQALLL 239
L N GE+P NL A L + L+ NN +L
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 83/218 (38%), Gaps = 45/218 (20%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFN 123
+LTG IP NRL+G IP I L + N +G P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 124 KSSLQHLDFSRNTLSGEIPANICSS--------LPFLDYLYLS----KNMLHG------- 164
SL LD + N +G IPA + + Y+Y+ K HG
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 165 -GIPS-------------------------TLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
GI S T N + L ++YN SG +PK+IG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
L L LG N + G IP E G+L L + L+ N L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182
N S+ LD S N LSG IP I S+P+L L L N + G IP + + L IL L+
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR 216
N G +P+ + LT L + L N L G IP
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI- 145
N++SG + + DVS N TG+ F+ + S+LQHLD S N LSG+ I
Sbjct: 185 NKISGDVDVSRCVNLEFLDVS-SNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 146 -CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGL 203
C+ L L+ +S N G IP L+ LSLA N F+G +P + G L GL
Sbjct: 242 TCTELKLLN---ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
L N G +P FG+ + LE ++L+ NN L
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 105 DVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164
D+S+ N L+G P I + L L+ N +SG IP + L L+ L LS N L G
Sbjct: 635 DMSY--NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDG 691
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPK 192
IP +S T L + L+ N+ SG +P+
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK 124
L+G IP N +SGSIP + L + N+L G P +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 125 SSLQHLDFSRNTLSGEIP 142
+ L +D S N LSG IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 80/260 (30%)
Query: 26 PTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXX 85
P L +W+++ C + GVTC KVT++++S L
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPA-- 143
F + + G F + +SL LD SRN+LSG +
Sbjct: 80 F---------------------LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLT 117
Query: 144 --NICSSLPFLD------------------------------------------------ 153
CS L FL+
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 154 -YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212
+L +S N + G + +S C L L ++ N+FS +P +G+ + L L + N+L G
Sbjct: 178 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 213 EIPREFGNLAELEQMSLAEN 232
+ R EL+ ++++ N
Sbjct: 235 DFSRAISTCTELKLLNISSN 254
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 47 TCDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIP-SAIFTTYTLKD 105
CD +T L++SG + G +P N SG +P + LK
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 106 VSFRENQLTGVFPSFIFNKS-SLQHLDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLH 163
+ N+ +G P + N S SL LD S N SG I N+C + L LYL N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
G IP TLSNC+ L L L++N SG +P +G+L+KL L L N L+GEIP+E +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 224 LEQMSLAENNLQA 236
LE + L N+L
Sbjct: 468 LETLILDFNDLTG 480
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Query: 48 CDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVS 107
C + + L + TG IP FN LSG+IPS++ + L+D+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
N L G P + +L+ L N L+GEIP+ + S+ L+++ LS N L G IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIP 507
Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
+ L IL L+ N FSG +P ++G+ L+ L L N G IP
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC 146
N +G IP + L + N L+G PS + + S L+ L N L GEIP +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 147 SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLG 206
+ L+ L L N L G IPS LSNCT L +SL+ N +G +PK IG L L L L
Sbjct: 464 Y-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 207 RNRLQGEIPREFGNLAELEQMSLAEN 232
N G IP E G+ L + L N
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 102 TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM 161
TL+++ + N TG P + N S L L S N LSG IP+++ SL L L L NM
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNM 453
Query: 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNL 221
L G IP L L L L +ND +G +P + N T L + L NRL GEIP+ G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 222 AELEQMSLAENNLQA 236
L + L+ N+
Sbjct: 514 ENLAILKLSNNSFSG 528
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 45/224 (20%)
Query: 58 LNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
+++S LTG IP N SG+IP+ + +L + N G
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 118 PSFIFNKSSLQHLDF---------------------------------SRNTLSGEIPAN 144
P+ +F +S +F N LS P N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 145 ICSSL------PFLD------YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK 192
I S + P D +L +S NML G IP + + YL IL+L +ND SG++P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
++G+L L L L N+L G IP+ L L ++ L+ NNL
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC 146
N+LSG AI T LK ++ NQ G P SLQ+L + N +GEIP +
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLS 290
Query: 147 SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY-- 204
+ L L LS N +G +P +C+ L L+L+ N+FSG +P D L K+ GL
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVL 348
Query: 205 -LGRNRLQGEIPREFGNL-AELEQMSLAENNLQALLL 239
L N GE+P NL A L + L+ NN +L
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 83/218 (38%), Gaps = 45/218 (20%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFN 123
+LTG IP NRL+G IP I L + N +G P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 124 KSSLQHLDFSRNTLSGEIPANICSS--------LPFLDYLYLS----KNMLHG------- 164
SL LD + N +G IPA + + Y+Y+ K HG
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 165 -GIPS-------------------------TLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
GI S T N + L ++YN SG +PK+IG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
L L LG N + G IP E G+L L + L+ N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182
N S+ LD S N LSG IP I S+P+L L L N + G IP + + L IL L+
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR 216
N G +P+ + LT L + L N L G IP
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI- 145
N++SG + + DVS N TG+ F+ + S+LQHLD S N LSG+ I
Sbjct: 188 NKISGDVDVSRCVNLEFLDVS-SNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 146 -CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGL 203
C+ L L+ +S N G IP L+ LSLA N F+G +P + G L GL
Sbjct: 245 TCTELKLLN---ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
L N G +P FG+ + LE ++L+ NN L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 105 DVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164
D+S+ N L+G P I + L L+ N +SG IP + L L+ L LS N L G
Sbjct: 638 DMSY--NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDG 694
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPK 192
IP +S T L + L+ N+ SG +P+
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK 124
L+G IP N +SGSIP + L + N+L G P +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 125 SSLQHLDFSRNTLSGEIP 142
+ L +D S N LSG IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 56/161 (34%)
Query: 125 SSLQHLDFSRNTLSGEIPA----NICSSLPFLD--------------------------- 153
+SL LD SRN+LSG + CS L FL+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 154 ----------------------YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP 191
+L +S N + G + +S C L L ++ N+FS +P
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 192 KDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
+G+ + L L + N+L G+ R EL+ ++++ N
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 59/255 (23%)
Query: 11 DQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDV--HSHKVTALNISGLNL- 65
D+ ALL +K + +PT +W + CN W GV CD +++V L++SGLNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 66 --------------------------TGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFT 99
G IP +SG+IP +
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 100 TYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK 159
TL + F N L+G P I + +L + F N +SG IP + S + +S+
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFG 219
N L G IP T +N L+LA+ D S RN L+G+ FG
Sbjct: 184 NRLTGKIPPTFAN------LNLAFVDLS-------------------RNMLEGDASVLFG 218
Query: 220 NLAELEQMSLAENNL 234
+ +++ LA+N+L
Sbjct: 219 SDKNTQKIHLAKNSL 233
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIP 142
L + R N++ G P + L L+ S N L GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 87 NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
N+LS S+PS F T L+ + +N+L P+ IF + +L+ L + N L +P
Sbjct: 47 NKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIG 103
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGL 203
+ L L L L +N L P + T L LSL YN+ ++PK + LT L L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162
Query: 204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
L N+L+ F L EL+ + L N L+
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 92 SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLP 150
+IPS I K + + N+L+ + PS F++ + L+ L + N L +PA I L
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 151 FLDYLYLSKNMLHG---GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR 207
L+ L+++ N L G+ L N LR L N P+ +LTKL L LG
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 208 NRLQGEIPREFGNLAELEQMSLAENNLQ 235
N LQ F L L+++ L N L+
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLK 170
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
IPS + T + L L N S K LTKL LYL N+LQ F L L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 225 EQMSLAENNLQALLLYSF 242
E + + +N LQAL + F
Sbjct: 88 ETLWVTDNKLQALPIGVF 105
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS-- 187
+D S L+ IP+NI + LD L N L T LR+L L N
Sbjct: 21 VDCSSKKLTA-IPSNIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 188 -GAVPKDIGNLT-------KLMGLYLG--------------RNRLQGEIPREFGNLAELE 225
+ K++ NL KL L +G RN+L+ PR F +L +L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 226 QMSLAENNLQAL 237
+SL N LQ+L
Sbjct: 137 YLSLGYNELQSL 148
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 87 NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
NRL+ +IP+ F + LK++ R N + + PS+ FN+ SL+ LD I
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
L L YL L+ L IP+ L+ L L L+ N S P L L L+
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
+ ++++Q F NL L +++LA NNL L F P
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 87 NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK--SSLQHLDFSRNTLSGEIPAN 144
N + S+ T L+ + + N L F + K SSL+ LD S N+L+
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
C+ + L LS NML G + L +++L L +N+ ++PKD+ +L L L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELN 479
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAEN 232
+ N+L+ F L L+ + L +N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 156 YLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
Y ++N+ H +P L T + LSL+ N S DI L++L L L NR++
Sbjct: 38 YSNRNLTH--VPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Query: 216 REFGNLAELEQMSLAENNLQ 235
F +LE + ++ N LQ
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQ 113
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 91 GSIPSAIFTTYTL-KDVSFREN-QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
I +A FT L + + +N QL V P+ L L R L E+ +
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 126
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
L L YLYL N L T + L L L N S + L L L L +N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
R+ P F +L L + L NNL AL + P
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 222
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 91 GSIPSAIFTTYTL-KDVSFREN-QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
I +A FT L + + +N QL V P+ L L R L E+ +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
L L YLYL N L T + L L L N S + L L L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
R+ P F +L L + L NNL AL + P
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
LYL N +P LSN +L ++ L+ N S + N+T+L+ L L NRL+
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 215 PREFGNLAELEQMSLAENNLQAL 237
PR F L L +SL N++ +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVV 117
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
NQ T + P + N L +D S N +S + S++ L L LS N L P T
Sbjct: 41 NQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
LR+LSL ND S +L+ L L +G N L
Sbjct: 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 87 NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
NRL+ ++P+ F + L+++ R N + + PS+ FN+ SL+ LD I
Sbjct: 93 NRLT-TVPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
L L YL L L IP+ L+ L L L+ N P LT L L+
Sbjct: 151 AFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
L ++ F +L LE+++L+ NNL +L F P
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 139 GEIPANICSSLPF-LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197
E+PA S+P YL L +N + T + +L IL L+ N L
Sbjct: 27 AEVPA----SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
L L L NRL + F L++L ++ L N ++++ Y+F
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 87 NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
NRL+ ++P+ F + L+++ R N + + PS+ FN+ SL+ LD I
Sbjct: 93 NRLT-TVPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
L L YL L L IP+ L+ L L L+ N P LT L L+
Sbjct: 151 AFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
L ++ F +L LE+++L+ NNL +L F P
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 139 GEIPANICSSLPF-LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197
E+PA S+P YL L +N + T + +L IL L+ N L
Sbjct: 27 AEVPA----SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
L L L NRL + F L++L ++ L N ++++ Y+F
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG---GIPSTLSNCTYLRILSL 181
++L +L + N L +P + L L L L +N L G+ L+N TYL +
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL--- 140
Query: 182 AYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
Y++ ++PK + LT L L L N+LQ F L +L+Q+SL +N L+++
Sbjct: 141 -YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
L N YL + +D S + LT L L L N+LQ F L L+++ L
Sbjct: 62 LPNVRYLALGGNKLHDISA-----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 230 AENNLQAL 237
EN LQ+L
Sbjct: 117 VENQLQSL 124
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 209 RLQGEIPREFGNLAELEQMSL 229
+ R L L+ + L
Sbjct: 184 HISD--LRALAGLKNLDVLEL 202
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 89 LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
G + F T +LK + N + + +F+ L+HLDF + L ++ S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGR 207
L L YL +S + + L +L +A N F DI L L L L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 208 NRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+L+ P F +L+ L+ +++A N L+++
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 153 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 209 RLQGEIPREFGNLAELEQMSL 229
+ R L L+ + L
Sbjct: 209 HISDL--RALAGLKNLDVLEL 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 209 RL 210
+
Sbjct: 187 HI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 209 RL 210
+
Sbjct: 189 HI 190
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 111 NQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
NQL P+ +F+K ++L+ L N L +P + L L YL L+ N L
Sbjct: 95 NQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
T L L L+YN LT+L L L +N+L+ F L L+ + L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 230 AEN 232
+N
Sbjct: 213 HDN 215
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG---GIPSTLSNCTYLRILSL 181
++L +L + N L +P + L L L L +N L G+ L+N TYL +L
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL---NL 140
Query: 182 AYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
A+N ++PK + LT L L L N+LQ F L +L+ + L +N L+++
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
L N YL + +D S + LT L L L N+LQ F L L+++ L
Sbjct: 62 LPNVRYLALGGNKLHDISA-----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 230 AENNLQAL 237
EN LQ+L
Sbjct: 117 VENQLQSL 124
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQGEIPREFGNLAELEQMSL 229
+ R L L+ + L
Sbjct: 207 HISD--LRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQGEIPREFGNLAELEQMSL 229
+ R L L+ + L
Sbjct: 207 HISD--LRALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQGEIPREFGNLAELEQMSL 229
+ R L L+ + L
Sbjct: 207 HISD--LRALAGLKNLDVLEL 225
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
SLQ LD S+N++S + CS L L +S N+L I L +++L L N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432
Query: 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
++PK + L L L + N+L+ F L L+++ L N
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Query: 89 LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
G + F T +LK + N + + +F+ L+HLDF + L ++ S
Sbjct: 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLS 443
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGR 207
L L YL +S + + L +L +A N F DI L L L L +
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 208 NRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+L+ P F +L+ L+ ++++ NN +L
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 209 RL 210
+
Sbjct: 189 HI 190
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 209 RL 210
+
Sbjct: 184 HI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Query: 89 LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
G + F T +LK + N + + +F+ L+HLDF + L ++ S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF-SGAVPKDIGNLTKLMGLYLGR 207
L L YL +S + + L +L +A N F +P L L L L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 208 NRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+L+ P F +L+ L+ ++++ NN +L
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 91 GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP 150
G + F T +LK + N + + +F+ L+HLDF + L ++ SL
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNR 209
L YL +S + + L +L +A N F DI L L L L + +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 210 LQGEIPREFGNLAELEQMSLAENNLQAL 237
L+ P F +L+ L+ ++++ NN +L
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N S VP + LTKL LYL +N
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185
Query: 209 RL 210
+
Sbjct: 186 HI 187
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 87 NRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
NR+S +P+A F + L + N L G+ + + L+ LD S N +
Sbjct: 41 NRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 146 CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP----KDIGNLTKLM 201
L L L+L + L P L+ L L N+ A+P +D+GNLT
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTH-- 156
Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
L+L NR+ F L L+++ L +N++ + ++F
Sbjct: 157 -LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 62/160 (38%), Gaps = 4/160 (2%)
Query: 87 NRLSGSIPSAIFTTYTL-KDVSFREN-QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPAN 144
N L+G I +A FT TL + + +N QL V P+ L L R L E+
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPG 122
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
+ L L YLYL N L +T + L L L N L L L
Sbjct: 123 LFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLL 182
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
L +N + P F +L L + L NNL L +P
Sbjct: 183 LHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVP 222
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
LP L+ LYL N + + LS T L LSL N VP + LTKL LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 209 RLQG-EIPREFGNLAELEQMS 228
+ R NL LE S
Sbjct: 187 HISDLRALRGLKNLDVLELFS 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA NNL L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
Query: 93 IPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLP 150
IPS F + L+++ R N + + PS+ FN+ SL LD I L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
L YL L M + L+ L L ++ N F P L+ L L++ +++
Sbjct: 197 NLKYLNLG--MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 211 QGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
F LA L +++LA NNL +L F P
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA NNL L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL-----SNCT 174
F+ LQ L ++N S S P L+ L+L +NML + L +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL----QGEIPREFGNLAELEQMSLA 230
+L++L L +N + P +LT L GL L NRL ++P A LE + ++
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDIS 534
Query: 231 ENNLQA 236
N L A
Sbjct: 535 RNQLLA 540
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 126 SLQHLDFSRNTLSGEIPANIC----SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSL 181
SL+ L N L +C L L LYL+ N L+ P S+ T LR LSL
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 182 AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELE 225
N + D+ L L + RN+L P F +L+ L+
Sbjct: 512 NSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLD 553
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 56 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 111
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA NNL L
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 168
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 169 LNGLENLDTLLLQENSLY 186
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA NNL L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA N L L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA N L L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA NNL L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA N L L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA N L L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 86 FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANI 145
FNRL+ A+ L+++ + N+L + P + L+ L + N L+ E+PA +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGL 167
Query: 146 CSSLPFLDYLYLSKNMLH 163
+ L LD L L +N L+
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
+ L L+ R L+ + +LP L L LS N L +P L +L +++N
Sbjct: 55 TRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
+ + L +L LYL N L+ P +LE++SLA N+L L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
+L LD S N L+ +P L L LYL N L P L+ L LSLA ND
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
+ + L L L L N L IP+ F
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
L L +L L N L + T L L LA N + +LT+L LYLG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
+L+ F L +L+++ L N LQ++ +F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 36/147 (24%)
Query: 102 TLKDVSFRE-----------NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP 150
TL D +FR NQL + + + L L + N L+ +P + L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLT 107
Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
LD LYL N L +PS + LTKL L L N+L
Sbjct: 108 QLDKLYLGGNQLKS-LPSGV-----------------------FDRLTKLKELRLNTNQL 143
Query: 211 QGEIPREFGNLAELEQMSLAENNLQAL 237
Q F L L+ +SL+ N LQ++
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
L L +L L N L + T L L LA N + +LT+L LYLG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
+L+ F L +L+++ L N LQ++ +F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 36/147 (24%)
Query: 102 TLKDVSFRE-----------NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP 150
TL D +FR NQL + + + L L + N L+ +P + L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLT 107
Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
LD LYL N L +PS + LTKL L L N+L
Sbjct: 108 QLDKLYLGGNQLKS-LPSGV-----------------------FDRLTKLKELRLNTNQL 143
Query: 211 QGEIPREFGNLAELEQMSLAENNLQAL 237
Q F L L+ +SL+ N LQ++
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL 200
+P I SS L+ L N L T L LSL+ N LTKL
Sbjct: 22 VPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 201 MGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
LYL N+LQ F L +L++++L N L+++
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
L + + NQLTG+ P+ S +Q L N + EI + L L L L N +
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114
Query: 163 HGGIPSTLSNCTYLRILSLAYNDFS 187
+P + + L L+LA N F+
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
G L L+ L L RN+L G P F + ++++ L EN ++ +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
NQ+T + P + N + L L N ++ P ++L L +L + N + + +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INAV 261
Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLA 230
+ T L+ L++ N S + NL++L L+L N+L E G L L + L+
Sbjct: 262 KDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
Query: 231 ENNL 234
+N++
Sbjct: 320 QNHI 323
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 157 LSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG---NLTKLMGLYLGRNRLQGE 213
++K ++ G +++ YL +L Y + +G DI NL KL LY+G N++
Sbjct: 46 ITKLVVAGEKVASIQGIEYLT--NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD- 102
Query: 214 IPREFGNLAELEQMSLAENNL 234
NL L ++ L E+N+
Sbjct: 103 -ISALQNLTNLRELYLNEDNI 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
AVP+ I T+L+ L G+NR++ EF + LE++ L EN + A+
Sbjct: 25 AVPEGIPTETRLLDL--GKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL 200
+P I + LD L KN + ++ +L L L N S P NL L
Sbjct: 26 VPEGIPTETRLLD---LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 201 MGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
L L NRL+ F L+ L ++ ++EN + LL Y F
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
LQHLDF +TL + SL L YL +S T L L +A N F
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 187 SGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
++ N T L L L + +L+ F L L+ ++++ NNL
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 93 IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
IP + + T+ +++ NQL + P+ S L LD N++S P +C LP L
Sbjct: 19 IPDDLPSNITVLNLT--HNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLL 75
Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
L L N L T CT L L L N N L+ L L N L
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%)
Query: 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR 207
L L LS N LH + S LR LSL YN+ P+ L+ L L L R
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
LQHLDF +TL + SL L YL +S T L L +A N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 187 SGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
++ N T L L L + +L+ F L L+ ++++ NNL
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
GIP+ TYL + + + V LT L LYLG N+LQ F L L
Sbjct: 25 GIPA---QTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 225 EQMSLAENNLQAL 237
++L+ N LQ+L
Sbjct: 79 TYLNLSTNQLQSL 91
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE- 217
++ H +P+ + T +IL L N + P +L L LYLG N+L G +P
Sbjct: 27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 218 FGNLAELEQMSLAENNLQAL 237
F +L +L + L N L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVL 103
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
GIP+T ++L L N + P LT+L L L N+L F L +L
Sbjct: 27 GIPTTT------QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 225 EQMSLAENNLQALLLYSF 242
Q+SL +N L+++ +F
Sbjct: 81 TQLSLNDNQLKSIPRGAF 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
GIP+T ++L L N + P LT+L L L N+L F L +L
Sbjct: 27 GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 225 EQMSLAENNLQALLLYSF 242
Q+SL +N L+++ +F
Sbjct: 81 TQLSLNDNQLKSIPRGAF 98
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL-S 171
L VF F + L+ L ++N ++ +I N L L L LS+N L G I S +
Sbjct: 291 LKSVFSHF----TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE 344
Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
N L +L L+YN + L L L L N+L+ F L L+++ L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Query: 232 N 232
N
Sbjct: 405 N 405
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
GIP+T ++L L N + P LT+L L L N+L F L +L
Sbjct: 35 GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 88
Query: 225 EQMSLAENNLQALLLYSF 242
Q+SL +N L+++ +F
Sbjct: 89 TQLSLNDNQLKSIPRGAF 106
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 164 GGIPS------TLSNCTYLRILS-------------LAYNDFSGAVPKDIGNLTKLMGLY 204
G PS TL NC +R+ S L N + P +L L LY
Sbjct: 4 AGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
N+L F L +L Q+ L +N+L+++ +F
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 93 IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
+P + T T+ +++ NQL + + S L LD NT+S P +C LP L
Sbjct: 19 VPDDLPTNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 75
Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
L L N L T + CT L L L N L+ L L N L
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 93 IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
+P + T T+ +++ NQL + + S L LD NT+S P +C LP L
Sbjct: 29 VPDDLPTNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 85
Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
L L N L T + CT L L L N
Sbjct: 86 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 93 IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
+P + T T+ +++ NQL + + S L LD NT+S P +C LP L
Sbjct: 24 VPDDLPTNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 80
Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
L L N L T + CT L L L N L+ L L N L
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 28/112 (25%)
Query: 127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
L+ F+ L+ IPAN+ + + L +L L N+ +PS L
Sbjct: 125 LKRFRFTTRRLT-HIPANLLTDMRNLSHLELRANIEE--MPSHL---------------- 165
Query: 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQAL 237
+L L + G N+L+ ++PR FG + +L+Q++LA N L+++
Sbjct: 166 -------FDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSV 209
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGE 213
LY+ N + P N L +L L ND S ++P+ I N KL L + N L+
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 156
Query: 214 IPREFGNLAELEQMSLAENNL 234
F L+ + L+ N L
Sbjct: 157 EDDTFQATTSLQNLQLSSNRL 177
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 139 GEIPANICSSLPFLDYLYLSK-NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197
+PA I ++ L +LY+++ L G+ +L+ TYL +LA N + L
Sbjct: 32 ASVPAGIPTTTQVL-HLYINQITKLEPGVFDSLTQLTYL---NLAVNQLTALPVGVFDKL 87
Query: 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
TKL L L N+L+ F NL L + L N
Sbjct: 88 TKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
N L L L N S P L KL LYL +N+L+ E+P + L+++ +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128
Query: 230 AENNL 234
EN +
Sbjct: 129 HENEI 133
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 91 GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP 150
+PS + TLK + N+ + N SL HL NT E+ +L
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 151 FLDYLYLSKNMLHGGIPST------LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
L L LS H I ++ L N ++L+ L+L+YN+ + +L L
Sbjct: 351 NLRELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 205 LGRNRLQ-GEIPREFGNLAELEQMSLA 230
L RL+ + F NL L+ ++L+
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLS 433
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
N L L L N S P L KL LYL +N+L+ E+P + L+++ +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128
Query: 230 AENNL 234
EN +
Sbjct: 129 HENEI 133
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC---SSLPFLDYLYLSKNMLHGGIPSTL 170
+GV + + LQ LD S N+L A C S L L+ + + G+P+ L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276
Query: 171 SNCTYLRILSLAYNDFSGAVPKD----IGNLT 198
S +L L+YN D +GNL+
Sbjct: 277 S------VLDLSYNRLDRNPSPDELPQVGNLS 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,526,544
Number of Sequences: 62578
Number of extensions: 248031
Number of successful extensions: 682
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 188
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)