Query 048688
Match_columns 244
No_of_seqs 195 out of 2935
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.4E-34 233.0 18.5 226 8-239 27-253 (968)
2 PLN00113 leucine-rich repeat r 99.9 5.9E-24 1.3E-28 196.2 13.4 188 52-240 139-326 (968)
3 KOG0617 Ras suppressor protein 99.8 1.1E-22 2.5E-27 144.6 -6.8 180 52-238 32-215 (264)
4 KOG4194 Membrane glycoprotein 99.8 5.8E-21 1.3E-25 158.4 1.7 182 53-235 173-354 (873)
5 KOG4194 Membrane glycoprotein 99.8 1.3E-20 2.9E-25 156.3 3.5 190 52-242 124-337 (873)
6 KOG0617 Ras suppressor protein 99.8 4.6E-21 9.9E-26 136.5 -5.3 161 73-239 29-190 (264)
7 KOG0444 Cytoskeletal regulator 99.7 1.8E-19 3.9E-24 151.1 -3.2 177 52-235 102-304 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 3.7E-19 8.1E-24 149.3 -1.6 180 52-236 77-282 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.3E-18 5E-23 137.4 2.0 178 51-235 250-541 (565)
10 KOG4237 Extracellular matrix p 99.7 9.7E-19 2.1E-23 139.1 -2.1 192 52-244 66-344 (498)
11 PLN03150 hypothetical protein; 99.6 2.6E-15 5.7E-20 131.9 13.3 154 4-163 366-528 (623)
12 KOG0472 Leucine-rich repeat pr 99.6 1.6E-18 3.4E-23 138.3 -8.5 106 124-236 182-311 (565)
13 KOG0532 Leucine-rich repeat (L 99.6 2.5E-17 5.5E-22 136.5 -5.7 177 52-238 74-250 (722)
14 KOG4237 Extracellular matrix p 99.6 9.6E-17 2.1E-21 127.8 -3.8 186 51-236 89-360 (498)
15 PLN03210 Resistant to P. syrin 99.6 1.1E-13 2.4E-18 129.6 15.7 105 52-160 610-714 (1153)
16 PRK15370 E3 ubiquitin-protein 99.5 2.5E-14 5.4E-19 126.9 9.8 165 53-237 199-382 (754)
17 PLN03210 Resistant to P. syrin 99.5 1.9E-13 4E-18 128.1 16.0 182 53-240 589-820 (1153)
18 PRK15370 E3 ubiquitin-protein 99.5 3.6E-14 7.8E-19 125.9 10.3 164 53-236 178-360 (754)
19 cd00116 LRR_RI Leucine-rich re 99.5 7.2E-16 1.6E-20 125.5 -1.1 185 52-237 80-293 (319)
20 KOG0618 Serine/threonine phosp 99.5 6.2E-16 1.3E-20 134.6 -3.1 173 54-233 288-487 (1081)
21 PRK15387 E3 ubiquitin-protein 99.5 6.6E-14 1.4E-18 123.9 9.0 174 52-241 241-464 (788)
22 cd00116 LRR_RI Leucine-rich re 99.5 6.3E-15 1.4E-19 120.0 -0.4 184 52-235 50-263 (319)
23 KOG0618 Serine/threonine phosp 99.5 3E-15 6.5E-20 130.4 -2.7 178 52-237 240-467 (1081)
24 COG4886 Leucine-rich repeat (L 99.4 3.2E-13 7E-18 113.2 6.2 180 53-241 116-296 (394)
25 PRK15387 E3 ubiquitin-protein 99.4 5.1E-12 1.1E-16 112.1 12.2 136 54-215 223-358 (788)
26 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.5E-18 114.3 -2.9 170 54-233 99-271 (722)
27 PLN03150 hypothetical protein; 99.3 1.8E-11 3.8E-16 107.9 8.4 113 126-239 419-532 (623)
28 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.2E-16 90.4 5.2 126 75-205 17-147 (175)
29 COG4886 Leucine-rich repeat (L 99.2 2.8E-11 6E-16 101.6 4.9 175 57-239 97-272 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 3.1E-11 6.6E-16 88.8 4.4 126 98-230 16-148 (175)
31 KOG3207 Beta-tubulin folding c 99.1 7.1E-12 1.5E-16 101.6 -0.8 183 51-234 119-313 (505)
32 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 96.0 -0.3 129 52-187 283-412 (490)
33 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.7E-16 96.1 -1.6 130 101-237 284-414 (490)
34 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.6E-15 68.7 4.3 61 174-234 1-61 (61)
35 KOG3207 Beta-tubulin folding c 99.0 6E-11 1.3E-15 96.3 -0.8 183 51-237 144-341 (505)
36 KOG1909 Ran GTPase-activating 98.9 6.1E-11 1.3E-15 93.7 -2.1 183 52-234 91-310 (382)
37 KOG1909 Ran GTPase-activating 98.9 3.6E-10 7.8E-15 89.4 0.9 162 73-235 88-283 (382)
38 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.4E-14 65.0 4.4 59 151-209 2-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 1.9E-09 4.1E-14 97.7 2.8 182 52-238 544-733 (889)
40 KOG2120 SCF ubiquitin ligase, 98.7 5.3E-11 1.2E-15 92.4 -8.8 179 53-233 185-374 (419)
41 KOG0531 Protein phosphatase 1, 98.7 3.9E-09 8.4E-14 89.1 0.2 173 53-237 95-270 (414)
42 KOG1859 Leucine-rich repeat pr 98.6 4.5E-10 9.7E-15 96.7 -7.9 126 103-236 166-293 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.6 5.9E-08 1.3E-12 88.2 4.6 129 53-185 523-653 (889)
44 KOG0531 Protein phosphatase 1, 98.6 4.1E-09 9E-14 89.0 -3.0 172 54-237 73-247 (414)
45 PF08263 LRRNT_2: Leucine rich 98.5 1E-07 2.2E-12 53.3 2.9 40 9-49 2-43 (43)
46 KOG4579 Leucine-rich repeat (L 98.4 4.4E-09 9.5E-14 72.8 -4.8 135 78-218 28-166 (177)
47 PF12799 LRR_4: Leucine Rich r 98.3 6.1E-07 1.3E-11 50.2 3.4 39 199-238 2-40 (44)
48 KOG2982 Uncharacterized conser 98.3 8.9E-08 1.9E-12 74.8 -0.2 84 53-136 71-157 (418)
49 KOG2120 SCF ubiquitin ligase, 98.3 4.4E-09 9.4E-14 82.0 -7.9 156 78-233 186-349 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.2 4.4E-07 9.5E-12 70.2 1.4 85 53-137 30-132 (388)
51 KOG4579 Leucine-rich repeat (L 98.2 2.9E-08 6.3E-13 68.8 -4.6 106 102-211 28-136 (177)
52 KOG1859 Leucine-rich repeat pr 98.2 9.3E-09 2E-13 88.8 -8.8 127 78-211 165-292 (1096)
53 KOG3665 ZYG-1-like serine/thre 98.1 8.1E-07 1.8E-11 79.0 1.2 134 101-236 122-264 (699)
54 KOG1644 U2-associated snRNP A' 98.1 7.3E-06 1.6E-10 60.7 5.9 126 79-208 21-150 (233)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.5E-10 46.0 3.5 15 123-137 22-36 (44)
56 PRK15386 type III secretion pr 98.0 5E-05 1.1E-09 63.1 9.5 134 52-208 51-187 (426)
57 KOG2982 Uncharacterized conser 97.9 2.4E-06 5.1E-11 67.0 0.2 187 52-238 44-265 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.9 9.6E-06 2.1E-10 62.9 3.1 165 71-236 86-286 (388)
59 PF13306 LRR_5: Leucine rich r 97.9 8.2E-05 1.8E-09 52.1 7.7 121 97-224 8-128 (129)
60 KOG1644 U2-associated snRNP A' 97.9 3.2E-05 7E-10 57.4 5.6 126 103-232 21-150 (233)
61 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-06 1.8E-10 72.7 1.4 149 77-228 122-281 (699)
62 PRK15386 type III secretion pr 97.8 0.00021 4.5E-09 59.5 9.5 133 75-232 50-187 (426)
63 PF13306 LRR_5: Leucine rich r 97.8 0.00017 3.7E-09 50.4 7.6 106 72-183 7-112 (129)
64 KOG2739 Leucine-rich acidic nu 97.4 4.4E-05 9.5E-10 58.8 0.9 40 99-138 63-104 (260)
65 KOG2123 Uncharacterized conser 97.1 1E-05 2.2E-10 63.0 -5.6 80 102-187 20-101 (388)
66 KOG2123 Uncharacterized conser 97.1 1.3E-05 2.9E-10 62.3 -5.1 101 123-228 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00037 8.1E-09 53.8 2.0 84 99-187 41-129 (260)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0026 5.6E-08 29.6 1.3 20 223-243 1-20 (22)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.008 1.7E-07 27.9 1.2 19 200-219 2-20 (22)
70 KOG1947 Leucine rich repeat pr 95.5 0.00061 1.3E-08 58.6 -4.8 92 71-162 208-307 (482)
71 PF13504 LRR_7: Leucine rich r 94.9 0.021 4.7E-07 24.6 1.5 14 223-236 2-15 (17)
72 smart00369 LRR_TYP Leucine-ric 94.7 0.024 5.2E-07 27.4 1.6 21 222-242 2-22 (26)
73 smart00370 LRR Leucine-rich re 94.7 0.024 5.2E-07 27.4 1.6 21 222-242 2-22 (26)
74 smart00370 LRR Leucine-rich re 94.0 0.068 1.5E-06 25.7 2.4 21 125-146 2-22 (26)
75 smart00369 LRR_TYP Leucine-ric 94.0 0.068 1.5E-06 25.7 2.4 21 125-146 2-22 (26)
76 KOG4308 LRR-containing protein 93.6 8.7E-05 1.9E-09 63.5 -14.1 182 55-236 89-304 (478)
77 KOG3864 Uncharacterized conser 93.3 0.005 1.1E-07 46.0 -3.5 83 124-207 100-185 (221)
78 KOG0473 Leucine-rich repeat pr 92.9 0.0019 4.1E-08 49.4 -6.2 84 148-234 40-123 (326)
79 KOG1947 Leucine rich repeat pr 92.3 0.021 4.6E-07 49.1 -1.7 112 75-186 186-307 (482)
80 KOG4308 LRR-containing protein 89.0 0.0015 3.3E-08 56.0 -11.4 158 79-237 89-277 (478)
81 KOG3864 Uncharacterized conser 88.9 0.038 8.3E-07 41.4 -2.6 85 99-183 99-185 (221)
82 PF13516 LRR_6: Leucine Rich r 88.3 0.24 5.3E-06 23.2 0.8 17 221-237 1-17 (24)
83 KOG4341 F-box protein containi 86.6 0.23 5E-06 41.5 0.3 111 123-233 318-437 (483)
84 smart00365 LRR_SD22 Leucine-ri 86.2 0.68 1.5E-05 22.4 1.7 17 222-238 2-18 (26)
85 KOG0473 Leucine-rich repeat pr 84.6 0.011 2.4E-07 45.3 -7.5 88 96-187 37-124 (326)
86 smart00364 LRR_BAC Leucine-ric 80.3 1.2 2.6E-05 21.5 1.2 17 222-238 2-18 (26)
87 smart00368 LRR_RI Leucine rich 79.6 1.6 3.5E-05 21.3 1.6 14 222-235 2-15 (28)
88 KOG4341 F-box protein containi 59.8 7.4 0.00016 33.0 2.2 154 52-205 293-459 (483)
89 smart00367 LRR_CC Leucine-rich 58.9 7 0.00015 18.5 1.3 13 221-233 1-13 (26)
90 KOG3763 mRNA export factor TAP 55.6 3.6 7.8E-05 35.9 -0.2 64 147-212 215-284 (585)
91 KOG3763 mRNA export factor TAP 47.9 9.9 0.00022 33.3 1.2 12 100-111 243-254 (585)
92 TIGR00864 PCC polycystin catio 32.6 35 0.00075 36.3 2.5 32 107-138 1-32 (2740)
93 TIGR00864 PCC polycystin catio 24.3 48 0.001 35.3 1.8 32 156-187 1-32 (2740)
94 cd00938 HisRS_RNA HisRS_RNA bi 23.4 67 0.0014 17.8 1.5 24 2-25 21-44 (45)
95 KOG4242 Predicted myosin-I-bin 23.0 1E+02 0.0022 26.9 3.3 84 77-162 165-253 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.6e-29 Score=233.01 Aligned_cols=226 Identities=41% Similarity=0.724 Sum_probs=144.9
Q ss_pred chhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCC
Q 048688 8 ITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFN 87 (244)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 87 (244)
...|+.+|++||+.+. ++...+.. |....++|.|.|+.|.. ..+|+.|+++++.+.+.++..|..+++|++|++++|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 4578999999999994 56666666 98888999999999975 568999999999998888889999999999999999
Q ss_pred CCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccC
Q 048688 88 RLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI 166 (244)
Q Consensus 88 ~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~ 166 (244)
.+.+.+|..+. .+.+|++|++++|.+.+..|. ..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccC
Confidence 98877777654 677777777777766654443 234555555555555544444444 44555555555555544444
Q ss_pred CccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccC
Q 048688 167 PSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 167 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
|..++++++|++|++++|.+.+.+|..+..+.+|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 4444445555555555544444444444444444444444444444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.9e-24 Score=196.17 Aligned_cols=188 Identities=38% Similarity=0.510 Sum_probs=116.6
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.+++++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45566666666666656666666667777777776666656666666666677777766666666666666666666666
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+.+.+|..+ ..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..+.+|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66666665555555 56666666666666665556666666666666666666655555555555555555555555555
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
+.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 55555555555555555555555554443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-22 Score=144.62 Aligned_cols=180 Identities=32% Similarity=0.486 Sum_probs=156.1
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|.+++|.++ .+|+.++.+.+|+.|++.+|++. .+|.++..+++|+.|++..|++. ..|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 467889999999998 78888999999999999999998 99999999999999999999988 8899999999999999
Q ss_pred ccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 132 FSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 132 l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
+..|++.. .+|.++ -.+..|+.|.+++|.+. .+|..++++++|+.|.++.|.+. .+|..++.+..|++|++++|++
T Consensus 109 ltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99998864 356555 46888999999999998 88999999999999999999876 6899999999999999999999
Q ss_pred cccCCccccCCC---CCCEEEccCCccCccc
Q 048688 211 QGEIPREFGNLA---ELEQMSLAENNLQALL 238 (244)
Q Consensus 211 ~~~~~~~l~~l~---~L~~L~l~~n~l~~~~ 238 (244)
+ .+|..++.+. +=+.+.+.+|+....+
T Consensus 186 ~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 186 T-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred e-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 8 7776666543 2355667777665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.8e-21 Score=158.39 Aligned_cols=182 Identities=25% Similarity=0.265 Sum_probs=108.7
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.++++|+|++|.|+..-.+.|..+.+|..|.|+.|+++...+.+|.++++|+.|+|..|++.-.-...|.++++|+.|.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 45666666666666555666666666666666666666444445555666666666666665333445556666666666
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
..|.+. .+-.+.|..+.++++|++..|+++..-..++.+++.|+.|++++|.|..+.++.+..+++|+.|+|++|.++.
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 666665 5555555666666666666666654334455566666666666666655555566666666666666666654
Q ss_pred cCCccccCCCCCCEEEccCCccC
Q 048688 213 EIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
..+..|..+..|+.|++++|.++
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred CChhHHHHHHHhhhhcccccchH
Confidence 44445555555555555555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-20 Score=156.28 Aligned_cols=190 Identities=23% Similarity=0.245 Sum_probs=141.6
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.++++.|+|.+|.|..+-.+.+..++.|+.|||+.|.|...--.+|..-.++++|+|+.|.|+......|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 45689999999988877778888888888888888888743334555667888888888888877777777888888888
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccc------------------------cCCccccCCCCCcEEeeccCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG------------------------GIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
|+.|.++ .+|...|.++++|+.|++..|.+.- .-...|..+.++++|+|..|.++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 8888887 8888777778888888887777641 11223344555666666666666
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
..-..++.++..|++|+++.|.+.+.-++.+..+++|+.|+++.|.|+..-+..|
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 5555666777778888888888777677777778888888888888887766554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=4.6e-21 Score=136.51 Aligned_cols=161 Identities=34% Similarity=0.506 Sum_probs=147.5
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688 73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152 (244)
Q Consensus 73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L 152 (244)
+-.+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|.+. .+|.++ +.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence 336788999999999998 88888999999999999999999 78889999999999999999997 888887 999999
Q ss_pred cEEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 048688 153 DYLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231 (244)
Q Consensus 153 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 231 (244)
+.|++.+|.+. ..+|..|..+..|+.|.+++|.+. .+|..++.+.+|+.|.+..|.+- .+|..++.+..|+.|.+++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999999875 368999999999999999999997 88999999999999999999988 7999999999999999999
Q ss_pred CccCcccC
Q 048688 232 NNLQALLL 239 (244)
Q Consensus 232 n~l~~~~~ 239 (244)
|.++-+.|
T Consensus 183 nrl~vlpp 190 (264)
T KOG0617|consen 183 NRLTVLPP 190 (264)
T ss_pred ceeeecCh
Confidence 99987655
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=1.8e-19 Score=151.15 Aligned_cols=177 Identities=29% Similarity=0.408 Sum_probs=91.7
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccc-cCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAI-FTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
+..++.||+++|.+. +.|..+....++-+|+|++|.|. .+|.++ .++..|-.|+|++|++. .+|..+..+..|++|
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 445666666666665 45666666666666666666665 444433 34555555666666555 445555555555555
Q ss_pred EccCCCCC-------------------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc
Q 048688 131 DFSRNTLS-------------------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185 (244)
Q Consensus 131 ~l~~~~~~-------------------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 185 (244)
.|++|.+. ..+|..+ ..+.+|..++++.|.+. .+|+.+.++.+|+.|+|++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 55555432 1233333 33444444445444444 444445555555555555555
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
++ .+-.....+.+|++|+++.|+++ .+|+++..+++|+.|++.+|+++
T Consensus 257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 44 22222233444555555555554 45555555555555555555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=3.7e-19 Score=149.26 Aligned_cols=180 Identities=29% Similarity=0.420 Sum_probs=121.5
Q ss_pred CCceEEEEeCCCccee-ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 52 SHKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
++.++.++++.|++.. -+|..+-.+..|+.|||++|++. +.|..+..-+++-+|+|++|+|..+-.+.+.++.-|-+|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 5566667777776652 25667778888888888888887 888888888888888888888874433455677888888
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccc-------------------------cCCccccCCCCCcEEeeccCc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-------------------------GIPSTLSNCTYLRILSLAYND 185 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~n~ 185 (244)
+|+.|.+. .+|+.+ ..+..|++|.+++|.+.- .+|..+..+.+|..++++.|.
T Consensus 156 DLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 88888886 788877 667777777777775421 234444445555666666665
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
+. .+|+.+..+.+|+.|+|++|+++ .+......+.+|++|++++|+++.
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc
Confidence 54 55666666666666666666665 444445555666666666666654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.3e-18 Score=137.39 Aligned_cols=178 Identities=31% Similarity=0.539 Sum_probs=118.1
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--------------
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV-------------- 116 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~-------------- 116 (244)
++.++..||++.|.++ +.|..+.-+++|.+||+++|.|+ .+|.+++++ .|+.|-+.+|.+..+
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 5788999999999998 78999999999999999999998 888888887 777777666421100
Q ss_pred ----------------------------CCccccCCCC--------------------------CCEEEccCCCCC----
Q 048688 117 ----------------------------FPSFIFNKSS--------------------------LQHLDFSRNTLS---- 138 (244)
Q Consensus 117 ----------------------------~~~~~~~l~~--------------------------L~~L~l~~~~~~---- 138 (244)
.|+. ..+-+ ....++++|++.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~-~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk 405 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDI-YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK 405 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccch-hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence 0000 00001 222233333222
Q ss_pred -------------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc-------------
Q 048688 139 -------------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF------------- 186 (244)
Q Consensus 139 -------------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~------------- 186 (244)
+.+|..+ ..+++|..|++++|.+. .+|..++.+..||+|+++.|.|
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l-~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~l 483 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLEL-SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTL 483 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHH-Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHH
Confidence 0112222 33445555555555444 4455555555555555555544
Q ss_pred ----------cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688 187 ----------SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 187 ----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
....+..+..+.+|.+||+.+|.+. .+|..++.|.+|++|+++||+|+
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 3333444778889999999999998 88999999999999999999998
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=9.7e-19 Score=139.06 Aligned_cols=192 Identities=22% Similarity=0.269 Sum_probs=146.6
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecC-CccCCCCCccc---------
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE-NQLTGVFPSFI--------- 121 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~--------- 121 (244)
+...+.|+|..|.|+.+.+++|..+++|+.|+|+.|.|+.+.|.+|..++++-.|.+.+ |+|+..-...|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45678899999999988899999999999999999999989999999999988887776 77764322333
Q ss_pred ---------------cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-----------------------
Q 048688 122 ---------------FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH----------------------- 163 (244)
Q Consensus 122 ---------------~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~----------------------- 163 (244)
..++++..|.+..|.+. .++...+..+..++++.++.|.+-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 34556666666666665 555544455555555555444410
Q ss_pred --------------------------------------ccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEE
Q 048688 164 --------------------------------------GGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204 (244)
Q Consensus 164 --------------------------------------~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 204 (244)
...| ..|..+++|++|+|++|+++++-+.+|.+...+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0111 1234567899999999999988888999999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCccCcccCCCCCC
Q 048688 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244 (244)
Q Consensus 205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 244 (244)
|..|++...-...|..+..|+.|++.+|+|+++.|..|.|
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 9999987555667888999999999999999999987754
No 11
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=2.6e-15 Score=131.86 Aligned_cols=154 Identities=27% Similarity=0.488 Sum_probs=129.1
Q ss_pred ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCc-----ceeeeeeCCC----CCceEEEEeCCCcceeccCccCC
Q 048688 4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVC-----NWTGVTCDVH----SHKVTALNISGLNLTGTIPSQLG 74 (244)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~~~~~----~~~l~~L~l~~~~~~~~~~~~~~ 74 (244)
+.++...|..+|.++|..+. .+.. .. |.. +.| .|.|+.|... ...++.|+|+++.+.+.+|..+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 45667789999999999984 3321 24 854 344 6999999531 23589999999999999999999
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcE
Q 048688 75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY 154 (244)
Q Consensus 75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~ 154 (244)
.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.....++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887433456778
Q ss_pred EEccccccc
Q 048688 155 LYLSKNMLH 163 (244)
Q Consensus 155 L~l~~~~~~ 163 (244)
+++.+|...
T Consensus 520 l~~~~N~~l 528 (623)
T PLN03150 520 FNFTDNAGL 528 (623)
T ss_pred EEecCCccc
Confidence 888887643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1.6e-18 Score=138.34 Aligned_cols=106 Identities=32% Similarity=0.532 Sum_probs=54.4
Q ss_pred CCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc------------------------CCCCCcEE
Q 048688 124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS------------------------NCTYLRIL 179 (244)
Q Consensus 124 l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------------------~~~~L~~L 179 (244)
|..|++|+...|.+. .+|+.+ +.+.+|..|++..|.+. .+| .|. +++++.+|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 444555555444443 555555 44555555555555444 333 233 44555555
Q ss_pred eeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 180 SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 180 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
++++|++. ..|+.+.-+.+|..||+++|.++ .+|..++.+ +|+.|-+.||++.+
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH
Confidence 55555554 44555555555555555555555 445555555 55555555555544
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.58 E-value=2.5e-17 Score=136.53 Aligned_cols=177 Identities=29% Similarity=0.418 Sum_probs=157.4
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+...+..|++.|.+. .+|+.+..+-.|+.+.++.|.+. .+|.+++.+..|.+|+|+.|.++ ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344566788888887 78888888888999999999998 89999999999999999999998 7888888887 99999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|+++ .+|..+ +...+|.+|+.+.|.+. .+|..++.+.+|+.|.++.|++. .+|+.+..++ |..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee
Confidence 9999998 999999 68899999999999998 88999999999999999999987 6777777554 899999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCccc
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
.+|-.|.+|++|++|-|.+|+++...
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCCh
Confidence 89999999999999999999998843
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=9.6e-17 Score=127.83 Aligned_cols=186 Identities=23% Similarity=0.252 Sum_probs=147.2
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCC-CCCCCCCCcccc------------------------CCCCCcE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIF------------------------TTYTLKD 105 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~------------------------~l~~L~~ 105 (244)
..+++++|||++|.|+.+-|++|.+++.|..|-+.+ |+|++.....|. .++++..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 578999999999999999999999999988887765 888743333443 3556666
Q ss_pred EEecCCccCCCCCccccCCCCCCEEEccCCCCC-----------------------------------------------
Q 048688 106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS----------------------------------------------- 138 (244)
Q Consensus 106 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~----------------------------------------------- 138 (244)
|.+.+|.+..+.-..+..+..++++.+..|.+.
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 667777666333336666777777776665411
Q ss_pred --------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEE
Q 048688 139 --------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204 (244)
Q Consensus 139 --------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 204 (244)
+..|..-|..+++|+.|++++|.++..-+.+|.....++.|.|..|.+...-...|.++..|++|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 122334456788999999999999988888999999999999999998756667788999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
|++|+++...|..|..+..|..|++-.|++.+
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99999998889999999999999999998754
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.1e-13 Score=129.63 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+.+++.|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|++|++.+|.....+|..+..+++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345666777766665 456666677777777777654333444 356667777777777654446666666777777777
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKN 160 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 160 (244)
+++|.....+|..+ .+++|++|++++|
T Consensus 688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI--NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence 77654333555433 3445555555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2.5e-14 Score=126.89 Aligned_cols=165 Identities=25% Similarity=0.429 Sum_probs=91.3
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
..++.|++++|.++ .+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 45777788888777 4554443 46777777777766 4554432 35666666666655 3343332 35556666
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc-------------------CCCCCcEEeeccCcccccCCcc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS-------------------NCTYLRILSLAYNDFSGAVPKD 193 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~n~~~~~~~~~ 193 (244)
++|.+. .+|..+ ..+|+.|++++|.++ .+|..+. -.++|+.|++++|.++ .+|..
T Consensus 270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~ 343 (754)
T PRK15370 270 FHNKIS-CLPENL---PEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPAS 343 (754)
T ss_pred cCCccC-cccccc---CCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChh
Confidence 655555 455433 134555555555554 2222111 1135666666666655 24433
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 194 IGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 194 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++.+
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC
Confidence 32 46777777777766 455444 24677777777776653
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=1.9e-13 Score=128.11 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=127.5
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.+++.|.+.++.+. .+|..| ...+|++|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 45778888887776 567666 5689999999999887 7788888899999999998765445664 778999999999
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc--------------------CCc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA--------------------VPK 192 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--------------------~~~ 192 (244)
.+|.....+|..+ ..+++|+.|++++|.....+|..+ ++++|+.|++++|..... +|.
T Consensus 665 ~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 665 SDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred cCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 9987666888887 889999999999875444566544 455566666555432111 221
Q ss_pred cc------------------------------cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 193 DI------------------------------GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 193 ~~------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
.+ ...++|+.|++++|.....+|..++.+++|+.|++++|..-+.+|.
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 10 0123566666666655556777777788888888877754333443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=3.6e-14 Score=125.90 Aligned_cols=164 Identities=28% Similarity=0.419 Sum_probs=121.9
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+ ..+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 45788999999888 5676553 57999999999998 6776654 58999999999988 456544 357999999
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcccc-----------------
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG----------------- 195 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----------------- 195 (244)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+.
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCC
Confidence 999998 8988773 57999999999998 5776553 489999999998873 343221
Q ss_pred --CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 196 --NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 196 --~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
-.++|+.|++++|.++ .+|..+. ++|+.|++++|+|+.
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 321 ETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV 360 (754)
T ss_pred ccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc
Confidence 1134566666666665 3444332 577888888887764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=7.2e-16 Score=125.50 Aligned_cols=185 Identities=20% Similarity=0.254 Sum_probs=131.9
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCC---CCEEeCCCCCCCC----CCCccccCC-CCCcEEEecCCccCCC----CCc
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSS---LQSLDLSFNRLSG----SIPSAIFTT-YTLKDVSFRENQLTGV----FPS 119 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~n~i~~----~~~~~l~~l-~~L~~L~l~~~~l~~~----~~~ 119 (244)
.++++.|+++++.+....+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. .+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 568999999999887555555544444 9999999988863 233345566 8899999999988732 233
Q ss_pred cccCCCCCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCcccccCC
Q 048688 120 FIFNKSSLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGAVP 191 (244)
Q Consensus 120 ~~~~l~~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~ 191 (244)
.+..+.+|++|++++|.+.+.. +..+ ...++|++|++++|.+.+. +...+..+++|+.|++++|.+++...
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4556788999999999887422 2223 4456899999999987532 34456678899999999998764222
Q ss_pred cccc-----CCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCcc
Q 048688 192 KDIG-----NLTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 192 ~~~~-----~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
..+. ....|++|++.+|.+++ .+...+..+++|+.|++++|.++..
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2221 24789999999998863 3345566778999999999998753
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=6.2e-16 Score=134.61 Aligned_cols=173 Identities=29% Similarity=0.388 Sum_probs=134.7
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcccc--------------------------CCCCCcEEE
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF--------------------------TTYTLKDVS 107 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--------------------------~l~~L~~L~ 107 (244)
+++.|+...|.++ .+|+...+++.|++|++..|.+. ..|+.+. .++.|+.|+
T Consensus 288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 3444444455554 46666667788888888887776 4444331 133477788
Q ss_pred ecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 108 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
+.+|.++......+.+++.|+.|+|++|.+. .+|...+..+..|++|++++|.++ .+|..+..+..|++|...+|.+.
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 8888888776677888999999999999997 888888788999999999999998 78899999999999999999887
Q ss_pred ccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccCCc
Q 048688 188 GAVPKDIGNLTKLMGLYLGRNRLQGE-IPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 233 (244)
.+| .+..++.|+.+|++.|.++.. ++.. ...++|++||++||.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCc
Confidence 677 778899999999999998753 3333 233899999999996
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=6.6e-14 Score=123.87 Aligned_cols=174 Identities=28% Similarity=0.359 Sum_probs=102.1
Q ss_pred CCceEEEEeCCCcceeccCccCCCC-----------------CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccC
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNL-----------------SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l-----------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~ 114 (244)
+++++.|++++|.++. +|.....+ ..|+.|++++|.+. .+|. .+++|+.|++++|.+.
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence 5677888888887763 34322111 23444555555554 3332 2356777777777665
Q ss_pred CCCCcc---c----------cC----CCCCCEEEccCCCCCCcCChhh----------------hCCCCCCcEEEccccc
Q 048688 115 GVFPSF---I----------FN----KSSLQHLDFSRNTLSGEIPANI----------------CSSLPFLDYLYLSKNM 161 (244)
Q Consensus 115 ~~~~~~---~----------~~----l~~L~~L~l~~~~~~~~l~~~~----------------~~~~~~L~~L~l~~~~ 161 (244)
+. |.. + .. ..+|++|++++|.++ .+|... .....+|+.|++++|.
T Consensus 316 ~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 316 SL-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 393 (788)
T ss_pred cC-CCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCc
Confidence 32 221 1 00 125677777777766 444311 0011245555666555
Q ss_pred ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS 241 (244)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 241 (244)
+. .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|+|++.+|..
T Consensus 394 Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 394 LT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 55 33432 245667777777766 34432 245777888888887 78888889999999999999999876653
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=6.3e-15 Score=119.97 Aligned_cols=184 Identities=22% Similarity=0.231 Sum_probs=130.5
Q ss_pred CCceEEEEeCCCcce------eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCC---CcEEEecCCccCC----CCC
Q 048688 52 SHKVTALNISGLNLT------GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---LKDVSFRENQLTG----VFP 118 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~---L~~L~l~~~~l~~----~~~ 118 (244)
.+.++.++++++.+. ..++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ ...
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 456888888887665 223456677889999999999887555555555555 9999999998763 222
Q ss_pred ccccCC-CCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc-
Q 048688 119 SFIFNK-SSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA- 189 (244)
Q Consensus 119 ~~~~~l-~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~- 189 (244)
..+..+ ++|+.|++.+|.+++..... .+..+.+|++|++++|.+.+ .++..+...++|+.|++++|.+.+.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 334556 88999999999887332221 22556789999999998863 2333455567999999999987633
Q ss_pred ---CCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCccC
Q 048688 190 ---VPKDIGNLTKLMGLYLGRNRLQGEIPREFG-----NLAELEQMSLAENNLQ 235 (244)
Q Consensus 190 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~ 235 (244)
+...+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 233456678899999999998753222222 2478999999999886
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=3e-15 Score=130.42 Aligned_cols=178 Identities=31% Similarity=0.472 Sum_probs=108.2
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..++++++++++.++ .+|+++..+.+|+.+...+|.+. .+|..+....+|+.|.+..|.+. .+|.....+..|++|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 567888888888887 46688888888888888888875 66666666666666666666665 4455555566677777
Q ss_pred ccCCCCCCcCChhhh-------------------------------------------------CCCCCCcEEEcccccc
Q 048688 132 FSRNTLSGEIPANIC-------------------------------------------------SSLPFLDYLYLSKNML 162 (244)
Q Consensus 132 l~~~~~~~~l~~~~~-------------------------------------------------~~~~~L~~L~l~~~~~ 162 (244)
|..|.+. .+|...+ .+..+|+.|++++|++
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 7766664 4443221 2333444455555444
Q ss_pred cccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 163 HGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 163 ~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
. .+| ..+.++..|++|+|++|.++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|.++.+
T Consensus 396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 4 223 23444444555555555444 33444444455555555555544 344 456677777888888877665
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=3.2e-13 Score=113.25 Aligned_cols=180 Identities=35% Similarity=0.530 Sum_probs=148.1
Q ss_pred CceEEEEeCCCcceeccCccCCCCC-CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLS-SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..++.+++.++.+. .++.....+. +|+.|++++|.+. .++..+..+++|+.|+++.|.+. ..+......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 46888999999888 5677777774 9999999999997 77777889999999999999998 4555455789999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .+|..+ .....|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..+..+..+++|++++|.++
T Consensus 193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9999998 888865 45667999999999644 56677888888999988888876 44667788888999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLLYS 241 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 241 (244)
.++. ++.+.+++.|++++|.+....|..
T Consensus 269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 -SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -cccc-ccccCccCEEeccCccccccchhh
Confidence 4444 888999999999999988776543
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=5.1e-12 Score=112.10 Aligned_cols=136 Identities=31% Similarity=0.395 Sum_probs=73.7
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
+++.|++.+|.++ .+|.. .++|++|++++|.++ .+|.. .++|+.|++.+|.+. .+|.. ..+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4555555555555 23321 345555666555555 33321 245555555555554 22221 2446666666
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 213 (244)
+|.++ .+|. .+++|+.|++++|.+. .+|.. ..+|+.|.+.+|.++ .+|.. ..+|+.|++++|+++ .
T Consensus 291 ~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~ 356 (788)
T PRK15387 291 GNQLT-SLPV----LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-S 356 (788)
T ss_pred CCccc-cccc----cccccceeECCCCccc-cCCCC---cccccccccccCccc-ccccc---ccccceEecCCCccC-C
Confidence 66665 5543 2356777777777776 34432 234556666666665 34431 246788888888877 4
Q ss_pred CC
Q 048688 214 IP 215 (244)
Q Consensus 214 ~~ 215 (244)
+|
T Consensus 357 LP 358 (788)
T PRK15387 357 LP 358 (788)
T ss_pred CC
Confidence 44
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.6e-13 Score=114.25 Aligned_cols=170 Identities=29% Similarity=0.397 Sum_probs=137.3
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
.|+.+.+.+|.+. .+|+++..+..|++++|+.|.+. .+|..++.+ -|+.|.+++|+++ .+|..+...++|.+|+.+
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 3455667777776 68899999999999999999998 888887766 4889999999988 778888888999999999
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 213 (244)
.|.+. .+|..+ +.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++. .+|-.|.++..|++|-|.+|+++ .
T Consensus 175 ~nei~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S 248 (722)
T KOG0532|consen 175 KNEIQ-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S 248 (722)
T ss_pred hhhhh-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence 99998 888888 78889999999998887 677777755 5889999999987 78888999999999999999998 5
Q ss_pred CCcccc---CCCCCCEEEccCCc
Q 048688 214 IPREFG---NLAELEQMSLAENN 233 (244)
Q Consensus 214 ~~~~l~---~l~~L~~L~l~~n~ 233 (244)
.|..+. ...-.++|+..-++
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ChHHHHhccceeeeeeecchhcc
Confidence 554443 23335677776663
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=107.91 Aligned_cols=113 Identities=33% Similarity=0.545 Sum_probs=95.7
Q ss_pred CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEc
Q 048688 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL 205 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 205 (244)
.++.|+|++|.+.+.+|..+ ..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37788899999888888877 78899999999999998888888899999999999999998888888889999999999
Q ss_pred cCCcccccCCccccCC-CCCCEEEccCCccCcccC
Q 048688 206 GRNRLQGEIPREFGNL-AELEQMSLAENNLQALLL 239 (244)
Q Consensus 206 ~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~ 239 (244)
++|.+++.+|..+... .++..+++.+|+..+-.|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999988888877653 467788888887666544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.5e-11 Score=90.45 Aligned_cols=126 Identities=31% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688 75 NLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD 153 (244)
Q Consensus 75 ~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~ 153 (244)
+...+++|+|.+|.|+ .+. .+. .+.+|+.|++++|.++.. . .+..+++|++|++++|.++ .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3445677777777776 332 343 466777777777777633 2 3556777777777777776 66554433467777
Q ss_pred EEEccccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEc
Q 048688 154 YLYLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYL 205 (244)
Q Consensus 154 ~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 205 (244)
+|++++|.+... .-..+..+++|+.|++.+|+++...- -.+..+++|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777777532 11345567777777777777653211 12345667776653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.8e-11 Score=101.58 Aligned_cols=175 Identities=32% Similarity=0.488 Sum_probs=141.2
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCC-CCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTY-TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
.++...+.+. .....+..+..++.+++.+|.+. .++....... +|+.|++++|.+. .+|..+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555543 22334445678999999999998 7777777774 9999999999998 55566789999999999999
Q ss_pred CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 215 (244)
.+. .++... +..+.|+.|++++|.+. .+|........|+.+.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 888765 47889999999999998 67776667777999999999644 45667788889999999999987 447
Q ss_pred ccccCCCCCCEEEccCCccCcccC
Q 048688 216 REFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 216 ~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
..+..++.++.|++++|+++.+.+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred chhccccccceecccccccccccc
Confidence 778889999999999999988644
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=3.1e-11 Score=88.78 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=50.6
Q ss_pred cCCCCCcEEEecCCccCCCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccc-cCCCC
Q 048688 98 FTTYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL-SNCTY 175 (244)
Q Consensus 98 ~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 175 (244)
.+..++++|+|.+|.++.+ . .+. .+.+|+.|++++|.+. .+. ++ ..++.|++|++++|.++ .+...+ ..+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~-~l~-~l-~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQIT-KLE-GL-PGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCc-ccc-Cc-cChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 3455789999999998743 2 344 5788999999999997 664 45 67899999999999998 454444 46889
Q ss_pred CcEEeeccCcccccC-CccccCCCCCCEEEccCCcccccCCc----cccCCCCCCEEEcc
Q 048688 176 LRILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIPR----EFGNLAELEQMSLA 230 (244)
Q Consensus 176 L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~ 230 (244)
|+.|++++|.+.... -..+..+++|+.|++.+|+++.. +. .+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 999999999886432 24567889999999999999843 32 35678899988753
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.1e-12 Score=101.55 Aligned_cols=183 Identities=21% Similarity=0.223 Sum_probs=103.6
Q ss_pred CCCceEEEEeCCCcceeccC--ccCCCCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCCccCCCCCccc-cCCC
Q 048688 51 HSHKVTALNISGLNLTGTIP--SQLGNLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFRENQLTGVFPSFI-FNKS 125 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~ 125 (244)
...+++.+.+.++.+. ..+ +....+++++.|+++.|-+..+ +..-...+|+|+.|+++.|.+.....+.. ..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3456677777777665 222 3555677788888877755422 22233467777888887777653222211 1456
Q ss_pred CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC-CccccCCCCCCEEE
Q 048688 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV-PKDIGNLTKLMGLY 204 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~ 204 (244)
.|+.|.++.|+++..-...+.-.+++++.|.+.+|............+..|+.|+|++|++.... -...+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 67777777777763322333345677777777766422122222334556677777777654211 13345666677777
Q ss_pred ccCCcccc-cCCcc-----ccCCCCCCEEEccCCcc
Q 048688 205 LGRNRLQG-EIPRE-----FGNLAELEQMSLAENNL 234 (244)
Q Consensus 205 l~~n~l~~-~~~~~-----l~~l~~L~~L~l~~n~l 234 (244)
++.|.+.. ..|+. ...+++|++|++..|++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 77666653 12333 34556677777777766
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.3e-11 Score=95.98 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=77.0
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+..++.+|+++|.++ .+.+++.-.+.++.|++++|.+. .+. .+..+++|+.|++++|.++ .....-..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 445666677777666 45666666666777777777665 322 2566666777777766665 2233333456666666
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEccccccccc-CCccccCCCCCcEEeeccCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
+.+|.+. .+ .++ ..+.+|..|++.+|+|... --..+++++.|+++.|.+|++.
T Consensus 359 La~N~iE-~L-SGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHh-hh-hhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666664 33 334 4566666677776666521 1135666666677666666665
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.3e-11 Score=96.05 Aligned_cols=130 Identities=25% Similarity=0.324 Sum_probs=56.3
Q ss_pred CCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEe
Q 048688 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS 180 (244)
Q Consensus 101 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (244)
..|+++++++|.++ .+..+..-.|.++.|+++.|.+. .+. ++ ..+++|++|++++|.++ .+..+-.++-+.++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nL-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NL-AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hh-hhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34445555555444 22233334445555555555543 222 22 34445555555555443 2222222334444555
Q ss_pred eccCcccccCCccccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCcc
Q 048688 181 LAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 181 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
|+.|.+.. -..+..+-+|..||+.+|++.. +-...++.+|-|+.+.+.+|++.++
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 55554431 1123334444555555554432 1123344555555555555555443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=3.5e-10 Score=68.74 Aligned_cols=61 Identities=34% Similarity=0.492 Sum_probs=44.6
Q ss_pred CCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 048688 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234 (244)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 234 (244)
++|++|++++|.++...+..|..+++|++|++++|.++...++.|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556777777777777777777766666777777788888777764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6e-11 Score=96.27 Aligned_cols=183 Identities=22% Similarity=0.209 Sum_probs=129.3
Q ss_pred CCCceEEEEeCCCccee--ccCccCCCCCCCCEEeCCCCCCCCCCCc-cccCCCCCcEEEecCCccCCCCC-ccccCCCC
Q 048688 51 HSHKVTALNISGLNLTG--TIPSQLGNLSSLQSLDLSFNRLSGSIPS-AIFTTYTLKDVSFRENQLTGVFP-SFIFNKSS 126 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~ 126 (244)
.+++++.|++++|-+.. .+......+++|+.|+++.|.+...... .-..+++|+.|.++.|.++.... ..+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 36789999999997652 2444556889999999999987622211 12367889999999999874322 23446799
Q ss_pred CCEEEccCCC-CCC-cCChhhhCCCCCCcEEEcccccccccCC--ccccCCCCCcEEeeccCcccccC-Ccc-----ccC
Q 048688 127 LQHLDFSRNT-LSG-EIPANICSSLPFLDYLYLSKNMLHGGIP--STLSNCTYLRILSLAYNDFSGAV-PKD-----IGN 196 (244)
Q Consensus 127 L~~L~l~~~~-~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~-~~~-----~~~ 196 (244)
|+.|++..|. +.. ..+. ..+..|++|++++|.+.. .+ ...+.++.|..|+++.+.+.... |+. ...
T Consensus 224 l~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATST---KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred HHHhhhhcccccceecchh---hhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 9999999994 221 2222 236678999999998863 33 35677889999999999876432 322 245
Q ss_pred CCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCcc
Q 048688 197 LTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 197 ~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+++|+.|++..|++.+ .--..+..+++|+.|.+..|.++..
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7899999999999853 1123355677888888888888754
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=6.1e-11 Score=93.66 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=127.5
Q ss_pred CCceEEEEeCCCcceeccC----ccCCCCCCCCEEeCCCCCCCCCCCc-------------cccCCCCCcEEEecCCccC
Q 048688 52 SHKVTALNISGLNLTGTIP----SQLGNLSSLQSLDLSFNRLSGSIPS-------------AIFTTYTLKDVSFRENQLT 114 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~-------------~l~~l~~L~~L~l~~~~l~ 114 (244)
.++++.|+|+.|-+...-+ +.+..+..|++|.+.+|.+...... ....-+.|+++...+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 3488889999887653222 3344678888999998877622111 1234567899998888876
Q ss_pred CC----CCccccCCCCCCEEEccCCCCCCcC---ChhhhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeecc
Q 048688 115 GV----FPSFIFNKSSLQHLDFSRNTLSGEI---PANICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAY 183 (244)
Q Consensus 115 ~~----~~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~ 183 (244)
.. ....+...+.|+.+.++.|.|...- ....+..+++|+.|++.+|.++. .+.+.+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 32 2234566788999999998875221 11223678899999999998763 3456677788999999999
Q ss_pred CcccccCCccc-----cCCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCcc
Q 048688 184 NDFSGAVPKDI-----GNLTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNL 234 (244)
Q Consensus 184 n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l 234 (244)
|.+......++ ...++|+.+.+.+|.++. .+..++...+.|..|++++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 98764333222 346889999999998874 2334456788899999999988
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=3.6e-10 Score=89.38 Aligned_cols=162 Identities=25% Similarity=0.276 Sum_probs=88.5
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCccc----cCCCCCcEEEecCCccCCC-------------CCccccCCCCCCEEEccCC
Q 048688 73 LGNLSSLQSLDLSFNRLSGSIPSAI----FTTYTLKDVSFRENQLTGV-------------FPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 73 ~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~~~l~~~-------------~~~~~~~l~~L~~L~l~~~ 135 (244)
+..+++|++++||.|.+....+..| ..+..|++|+|.+|.+... ....+..-+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3344566666666665543333222 3455566666666654311 1111233455666666666
Q ss_pred CCCCcCCh----hhhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEE
Q 048688 136 TLSGEIPA----NICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGL 203 (244)
Q Consensus 136 ~~~~~l~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L 203 (244)
.+- .-+. ..++..+.|+.+.+..|.|.. .+...+..+++|+.|++++|-++.. +...+..+++|+.|
T Consensus 168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 553 2211 223455667777777766642 1223456677777788777776521 22344566777777
Q ss_pred EccCCcccccCCcc----c-cCCCCCCEEEccCCccC
Q 048688 204 YLGRNRLQGEIPRE----F-GNLAELEQMSLAENNLQ 235 (244)
Q Consensus 204 ~l~~n~l~~~~~~~----l-~~l~~L~~L~l~~n~l~ 235 (244)
+++.|.+....... + ...+.|++|.+.+|.++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 77777776432222 2 23577778887777664
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=2.5e-09 Score=64.95 Aligned_cols=59 Identities=34% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR 209 (244)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (244)
+|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555543333444555555555555555544444455555555555555554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=1.9e-09 Score=97.70 Aligned_cols=182 Identities=22% Similarity=0.250 Sum_probs=94.2
Q ss_pred CCceEEEEeCCCc--ceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688 52 SHKVTALNISGLN--LTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129 (244)
Q Consensus 52 ~~~l~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 129 (244)
.+++++|-+..+. +.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+..+..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3456666666553 33344445666666666666665444466666666666666666666666 56666666666666
Q ss_pred EEccCCCCCCcCChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCcccccCCccccCCCCC----CEE
Q 048688 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL----MGL 203 (244)
Q Consensus 130 L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L 203 (244)
|++..+.....+ .++...+++|++|.+...... ...-..+..+..|+.+........ .+. .+..+..| +.+
T Consensus 623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e-~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 623 LNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLE-DLLGMTRLRSLLQSL 699 (889)
T ss_pred eccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHh-hhhhhHHHHHHhHhh
Confidence 666665544223 333244666666666544311 111122233334444333222110 000 11111111 122
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688 204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 204 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
.+.++... ..+..+..+.+|+.|.+.++.+....
T Consensus 700 ~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 700 SIEGCSKR-TLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred hhcccccc-eeecccccccCcceEEEEcCCCchhh
Confidence 22223332 44556778888999999888876543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.3e-11 Score=92.39 Aligned_cols=179 Identities=20% Similarity=0.167 Sum_probs=121.5
Q ss_pred CceEEEEeCCCccee-ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCc-cCCC-CCccccCCCCCCE
Q 048688 53 HKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ-LTGV-FPSFIFNKSSLQH 129 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~ 129 (244)
.+++++|+++..++. .+-..+..+++|+.|.+.++.+.+.+...+.+-.+|+.|+++++. ++.. .--.+.++..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457888888887762 234455678889999999999988888888888899999998875 3321 1123567889999
Q ss_pred EEccCCCCCCcCChhhhC-CCCCCcEEEccccccc--c-cCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCEEE
Q 048688 130 LDFSRNTLSGEIPANICS-SLPFLDYLYLSKNMLH--G-GIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMGLY 204 (244)
Q Consensus 130 L~l~~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~--~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~ 204 (244)
|+++++.........+.. -..+|..|+++++.-. . .+..-...+++|.+|+|++|. ++...--.+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999775333222111 1356778888876432 1 122223468899999999885 3322233566788899999
Q ss_pred ccCCcccccCCcc---ccCCCCCCEEEccCCc
Q 048688 205 LGRNRLQGEIPRE---FGNLAELEQMSLAENN 233 (244)
Q Consensus 205 l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~ 233 (244)
++.|.. .+|.. +...+.|.+|++.++-
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 988763 34443 4567888999887763
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.9e-09 Score=89.11 Aligned_cols=173 Identities=30% Similarity=0.394 Sum_probs=79.4
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.+++.+++.++.+.. +...+..+.+|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 445555555555542 222244455555555555555421 1233444455555555555421 12233555555555
Q ss_pred cCCCCCCcCChh-hhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCC--CCCEEEccCCc
Q 048688 133 SRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT--KLMGLYLGRNR 209 (244)
Q Consensus 133 ~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~ 209 (244)
++|.+. .+... . ..+..++.+.+.+|.+.. ...+..+..+..+++..|.++..-+ +.... .|+.+++.+|+
T Consensus 170 ~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 170 SYNRIV-DIENDEL-SELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred Ccchhh-hhhhhhh-hhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 555554 33321 1 334455555555554431 1111122222223444444331111 11111 25666677776
Q ss_pred ccccCCccccCCCCCCEEEccCCccCcc
Q 048688 210 LQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+. ..+..+..+..+..|++.+|++...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cc-cccccccccccccccchhhcccccc
Confidence 65 3334555666667777777766554
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=4.5e-10 Score=96.72 Aligned_cols=126 Identities=30% Similarity=0.416 Sum_probs=78.6
Q ss_pred CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCc-cccCCCCCcEEee
Q 048688 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCTYLRILSL 181 (244)
Q Consensus 103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l 181 (244)
|...++++|.+. .+...+.-++.+++|+|+.|+++ .+. .+ ..+++|++||+++|.++ .+|. ....+ .|+.|.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~L-r~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NL-RRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HH-Hhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 334444455544 33444555677788888888776 443 44 66778888888888776 4443 22233 3788888
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEEccCCccCc
Q 048688 182 AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI-PREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 182 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
++|.++.. ..+.++.+|+.||++.|-+.+.- -.-++.+..|+.|++.||++-+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88877522 24566777888888887766421 1224566777888888887644
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=5.9e-08 Score=88.23 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=83.2
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC--CCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR--LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
..++++.+.++.+. .++... ..+.|+.|-+..|. +.......|..++.|++|++++|.-.+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45566666666655 333333 22367777777764 332233335567777777777766555777777777777777
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 185 (244)
+++++.+. .+|.++ ..+..|.+|++..+.....+|.....+.+|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 777777 677777777777665544555666667777777776653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=4.1e-09 Score=88.96 Aligned_cols=172 Identities=26% Similarity=0.276 Sum_probs=95.1
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
.+..+.++.+.+. .+-..+..+.+|+.+++..|.|. .+...+..+++|++|++++|.|+... .+..++.|+.|++.
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 3444445555444 22334556666777777777665 33333556667777777777766432 23455557777777
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccccCCcc-ccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST-LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
+|.+. .+.. + ..+..|+.+++++|.+...-+ . ...+.+++.+.+..|.+.. ...+.....+..+++..|.++.
T Consensus 149 ~N~i~-~~~~-~-~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLIS-DISG-L-ESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcch-hccC-C-ccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence 77665 4432 2 346666777777776653222 1 3556666667676666542 1223333444444666666652
Q ss_pred cCCccccCCC--CCCEEEccCCccCcc
Q 048688 213 EIPREFGNLA--ELEQMSLAENNLQAL 237 (244)
Q Consensus 213 ~~~~~l~~l~--~L~~L~l~~n~l~~~ 237 (244)
.- .+..+. +|+.+++++|++..+
T Consensus 223 ~~--~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 223 LE--GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred cc--CcccchhHHHHHHhcccCccccc
Confidence 11 122222 378888888887754
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.51 E-value=1e-07 Score=53.29 Aligned_cols=40 Identities=48% Similarity=1.038 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhcccCCcchhcCCCCCC--CCCcceeeeeeC
Q 048688 9 TTDQDALLALKAHITHDPTNFLAKNWNTS--APVCNWTGVTCD 49 (244)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~~~ 49 (244)
+.|+++|++||.++..++...+.. |... .++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 579999999999997667667777 9887 799999999995
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=4.4e-09 Score=72.83 Aligned_cols=135 Identities=24% Similarity=0.362 Sum_probs=86.6
Q ss_pred CCCEEeCCCCCCCCCCCcccc---CCCCCcEEEecCCccCCCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688 78 SLQSLDLSFNRLSGSIPSAIF---TTYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLD 153 (244)
Q Consensus 78 ~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~ 153 (244)
.+..++|+.+.+. .+++..+ ....|...+|++|.+. .+|..|. ..+.++.|++..|.++ .+|..+ ..++.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALR 103 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhh
Confidence 3555666666664 4444444 3345666678888877 4454444 4468888888888887 888885 7888888
Q ss_pred EEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 048688 154 YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218 (244)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 218 (244)
.++++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+..-......++.++++.+.-+..+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 8888888887 56777777778888888888765 333223222333334455666665444433
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=6.1e-07 Score=50.23 Aligned_cols=39 Identities=31% Similarity=0.572 Sum_probs=25.1
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
+|++|++++|.++ .+|..++.+++|+.|++++|+++.+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 5677777777776 45555677777777777777776543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=8.9e-08 Score=74.78 Aligned_cols=84 Identities=25% Similarity=0.308 Sum_probs=43.9
Q ss_pred CceEEEEeCCCcce--eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC-CCccccCCCCCCE
Q 048688 53 HKVTALNISGLNLT--GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV-FPSFIFNKSSLQH 129 (244)
Q Consensus 53 ~~l~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~ 129 (244)
.+|+.+|+.+|.++ ..+...+.+++.|+.|+++.|.+...+........+|++|.|.++.+... ....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 45666666666654 22334445666666666666655422211113445666666666655432 2233445566666
Q ss_pred EEccCCC
Q 048688 130 LDFSRNT 136 (244)
Q Consensus 130 L~l~~~~ 136 (244)
|+++.|.
T Consensus 151 lHmS~N~ 157 (418)
T KOG2982|consen 151 LHMSDNS 157 (418)
T ss_pred hhhccch
Confidence 6666653
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.4e-09 Score=81.95 Aligned_cols=156 Identities=22% Similarity=0.211 Sum_probs=110.8
Q ss_pred CCCEEeCCCCCCCC-CCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC-CCCcCChhhhCCCCCCcEE
Q 048688 78 SLQSLDLSFNRLSG-SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT-LSGEIPANICSSLPFLDYL 155 (244)
Q Consensus 78 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~l~~~~~~~~~~L~~L 155 (244)
.|+++||++..|+. ....-+..+.+|+.|.+.++.+.+.+...+..-.+|+.++++++. ++..-...++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48899999887762 234455678899999999999887777778888999999998864 5533445566788999999
Q ss_pred EcccccccccC-CccccC-CCCCcEEeeccCcc--ccc-CCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEc
Q 048688 156 YLSKNMLHGGI-PSTLSN-CTYLRILSLAYNDF--SGA-VPKDIGNLTKLMGLYLGRNR-LQGEIPREFGNLAELEQMSL 229 (244)
Q Consensus 156 ~l~~~~~~~~~-~~~l~~-~~~L~~L~l~~n~~--~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l 229 (244)
++++|...... ...+.. -..|..|+++++.- ... +.--...+++|.+|||+.|. ++......+-.++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 99999765321 111222 24688888888642 111 11123578999999999874 55445556778899999999
Q ss_pred cCCc
Q 048688 230 AENN 233 (244)
Q Consensus 230 ~~n~ 233 (244)
++|-
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 9884
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=4.4e-07 Score=70.16 Aligned_cols=85 Identities=20% Similarity=0.375 Sum_probs=38.8
Q ss_pred CceEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCC---CCC-------CccccCCCCCcEEEecCCccCCCCC
Q 048688 53 HKVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLS---GSI-------PSAIFTTYTLKDVSFRENQLTGVFP 118 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~---~~~-------~~~l~~l~~L~~L~l~~~~l~~~~~ 118 (244)
..++.+++++|.+... +...++.-++|++..++.--.. +.+ ..++.+||.|+..+|++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4556666666665422 2333334455555555432111 111 1222345555555555555443333
Q ss_pred c----cccCCCCCCEEEccCCCC
Q 048688 119 S----FIFNKSSLQHLDFSRNTL 137 (244)
Q Consensus 119 ~----~~~~l~~L~~L~l~~~~~ 137 (244)
. .+++...|.+|.+++|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC
Confidence 2 233445555555555544
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=2.9e-08 Score=68.82 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=80.8
Q ss_pred CCcEEEecCCccCCCCCcc---ccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688 102 TLKDVSFRENQLTGVFPSF---IFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178 (244)
Q Consensus 102 ~L~~L~l~~~~l~~~~~~~---~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 178 (244)
.+..++|+.|.+- .+++. +.....|+.+++++|.+. ..|+.+-..++.+++++++.|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3556677777654 23333 334455667789999998 888877566778899999999998 67888999999999
Q ss_pred EeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
|+++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 999999987 66777777888888888888776
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=9.3e-09 Score=88.85 Aligned_cols=127 Identities=28% Similarity=0.317 Sum_probs=96.5
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
.|...++++|.+. ....++.-++.++.|+|++|+++... .+..++.|++|||+.|.+. .+|.-- ..-.+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~-~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLS-MVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccc-hhhhhheeeee
Confidence 4666777888776 67777888899999999999998443 6889999999999999997 777533 22234899999
Q ss_pred ccccccccCCccccCCCCCcEEeeccCcccccCC-ccccCCCCCCEEEccCCccc
Q 048688 158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~ 211 (244)
.+|.++ .+ ..+.++.+|+.|++++|-+.+--. ..+..+..|..|+|.||++.
T Consensus 240 rnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999886 32 356788999999999998753211 12345677889999999875
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=8.1e-07 Score=78.98 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCcEEEecCCccC-CCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688 101 YTLKDVSFRENQLT-GVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178 (244)
Q Consensus 101 ~~L~~L~l~~~~l~-~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 178 (244)
.+|++|++++.... ...+..++ -+|.|+.|.+++-.+...=-..++.++++|..||+++++++. + ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 46888888775532 12222232 468888888888666422223455778888888888888863 2 56778888888
Q ss_pred EeeccCcccc-cCCccccCCCCCCEEEccCCcccccC--C----ccccCCCCCCEEEccCCccCc
Q 048688 179 LSLAYNDFSG-AVPKDIGNLTKLMGLYLGRNRLQGEI--P----REFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 179 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~ 236 (244)
|.+.+-.+.. ..-..+..+++|+.||++..+..+.. . +.-..+|+|+.||++++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8877765542 11234567888888888876554211 0 112347888888888876654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=7.3e-06 Score=60.74 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=78.5
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688 79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158 (244)
Q Consensus 79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~ 158 (244)
=+++++.+.++. .+-.-=....+...++|++|.+. .. ..|..+++|.+|.+..|.|+ .+.+.+...+++|..|.+.
T Consensus 21 e~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 345566655543 21111112345667788888775 22 23567788888888888887 7766665556778888888
Q ss_pred ccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEccCC
Q 048688 159 KNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLGRN 208 (244)
Q Consensus 159 ~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n 208 (244)
+|.+... .-.-+..++.|+.|.+-+|+++...- -.+..+++|+.||.+.-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8877621 11235567788888888887753211 13456778888887553
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.7e-06 Score=45.98 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=5.7
Q ss_pred CCCCCCEEEccCCCC
Q 048688 123 NKSSLQHLDFSRNTL 137 (244)
Q Consensus 123 ~l~~L~~L~l~~~~~ 137 (244)
.+++|++|++++|.+
T Consensus 22 ~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 22 NLPNLETLNLSNNPI 36 (44)
T ss_dssp TCTTSSEEEETSSCC
T ss_pred CCCCCCEEEecCCCC
Confidence 333333333333333
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=5e-05 Score=63.08 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC-ccCCCCCccccCCCCCCEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN-QLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L 130 (244)
+..++.|++++|.++ .+|. + -.+|++|.++++.-...+|..+ .++|++|.+++| .+. .+| ..|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceE
Confidence 356788999998777 4552 2 2369999998754333566544 357999999887 443 333 357777
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCC
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 208 (244)
++..+... .++ .+ .++|+.|.+.++... ..++.. -.++|++|++.+|... ..|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~-~L~-~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATD-SIK-NV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCc-ccc-cC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 77765543 221 11 234566666432211 011111 1257999999988754 3444332 57888888765
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=2.4e-06 Score=67.01 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=119.4
Q ss_pred CCceEEEEeCCCcceec-cCccCC-CCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688 52 SHKVTALNISGLNLTGT-IPSQLG-NLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 127 (244)
++.++.+.+.++.+..+ ....|+ ....++++|+.+|.|.++ +..-+.++|.|++|++++|.+...+........+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 44455666777765421 112222 457899999999999854 45566789999999999999874433322467899
Q ss_pred CEEEccCCCCCCcCChhhhCCCCCCcEEEccccccccc--CCcccc---------------------------CCCCCcE
Q 048688 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG--IPSTLS---------------------------NCTYLRI 178 (244)
Q Consensus 128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~---------------------------~~~~L~~ 178 (244)
+.|-|.+..+...-.......++.+++|.++.|..+.. ...... .++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 99999998876444444446788888888888843210 000010 1234444
Q ss_pred EeeccCcccc-cCCccccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCccc
Q 048688 179 LSLAYNDFSG-AVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 179 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
+.+..|++.. ...+....++.+.-|.|+.+.+.. +--+.+..+++|..|.+.++++....
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 5555554421 122334445666677777777753 23456788999999999999987654
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=9.6e-06 Score=62.93 Aligned_cols=165 Identities=20% Similarity=0.180 Sum_probs=101.0
Q ss_pred ccCCCCCCCCEEeCCCCCCCCCCCccc----cCCCCCcEEEecCCccCCCCCcc-------------ccCCCCCCEEEcc
Q 048688 71 SQLGNLSSLQSLDLSFNRLSGSIPSAI----FTTYTLKDVSFRENQLTGVFPSF-------------IFNKSSLQHLDFS 133 (244)
Q Consensus 71 ~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~l~ 133 (244)
+++..|++|+..+++.|.+....|..+ .....|.+|.+++|.+....... ..+-|.|+.++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 455678888888888887775555544 34567888888888764221111 2345778888887
Q ss_pred CCCCCCcCChhh----hCCCCCCcEEEccccccccc-----CCccccCCCCCcEEeeccCccccc----CCccccCCCCC
Q 048688 134 RNTLSGEIPANI----CSSLPFLDYLYLSKNMLHGG-----IPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKL 200 (244)
Q Consensus 134 ~~~~~~~l~~~~----~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L 200 (244)
.|.+. ..+... +..-..|.++.+..|.|... .-..+..+.+|+.|+++.|.++-. +...+..++.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77764 333221 12224677788877777521 011234567888888888877522 22344566778
Q ss_pred CEEEccCCcccccCCcc----cc--CCCCCCEEEccCCccCc
Q 048688 201 MGLYLGRNRLQGEIPRE----FG--NLAELEQMSLAENNLQA 236 (244)
Q Consensus 201 ~~L~l~~n~l~~~~~~~----l~--~l~~L~~L~l~~n~l~~ 236 (244)
+.|.+..|.++...... +. ..++|..|...+|.+.+
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 88888888776433222 21 34667777777776544
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.89 E-value=8.2e-05 Score=52.05 Aligned_cols=121 Identities=20% Similarity=0.295 Sum_probs=40.1
Q ss_pred ccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCC
Q 048688 97 IFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL 176 (244)
Q Consensus 97 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 176 (244)
|..+.+|+.+.+.. .+.......|..+.+|+.+.+..+ +. .++...|..+.+++.+.+.. .+.......+..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 34444444444442 233233334444545555555443 33 44444444554555555543 2221222344445555
Q ss_pred cEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 048688 177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224 (244)
Q Consensus 177 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 224 (244)
+.+.+..+ +.......+..+ .++.+.+.. .+.......|..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 222233334444 555555543 2222333444444444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=3.2e-05 Score=57.40 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=86.9
Q ss_pred CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec
Q 048688 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182 (244)
Q Consensus 103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (244)
-+.+++.+.++... ...-........+|+++|.+. .++ .+ ..++.|.+|.++.|+|+..-|..-..+++|..|.|.
T Consensus 21 e~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~-~l~-~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR-KLD-NL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch-hhccccccccceecccccchh-hcc-cC-CCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 45566666665422 111113456778999999885 443 33 678899999999999985555544566789999999
Q ss_pred cCcccccC-CccccCCCCCCEEEccCCcccccC---CccccCCCCCCEEEccCC
Q 048688 183 YNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEI---PREFGNLAELEQMSLAEN 232 (244)
Q Consensus 183 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n 232 (244)
+|.+.... -..+..+++|++|.+-+|+++..- .-.+..+++|+.||+++-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99876432 134567889999999999887321 123567899999998754
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=8.2e-06 Score=72.74 Aligned_cols=149 Identities=22% Similarity=0.201 Sum_probs=91.6
Q ss_pred CCCCEEeCCCCCCC--CCCCccccCCCCCcEEEecCCccCCC-CCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688 77 SSLQSLDLSFNRLS--GSIPSAIFTTYTLKDVSFRENQLTGV-FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD 153 (244)
Q Consensus 77 ~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~ 153 (244)
.+|++|++++...- ++...--..+|+|+.|.+.+-.+... +-....++|+|..||+++++++ .+ .++ +.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence 46788888775432 12222224578888888887665422 2233456788999999998886 55 566 7888888
Q ss_pred EEEcccccccc-cCCccccCCCCCcEEeeccCcccccC--C----ccccCCCCCCEEEccCCcccccCCcc-ccCCCCCC
Q 048688 154 YLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAV--P----KDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELE 225 (244)
Q Consensus 154 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 225 (244)
.|.+.+-.+.. ..-..+.++++|+.||++........ . +.-..++.|+.||.+++.+....-+. +..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88876655542 12235667888889988876532111 1 11134788899999888776533222 22334444
Q ss_pred EEE
Q 048688 226 QMS 228 (244)
Q Consensus 226 ~L~ 228 (244)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 444
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00021 Score=59.52 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=61.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC-CCCCcCChhhhCCCCCCc
Q 048688 75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN-TLSGEIPANICSSLPFLD 153 (244)
Q Consensus 75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~l~~~~~~~~~~L~ 153 (244)
.+.++++|++++|.+. .+|. -..+|+.|.++++.-...+|..+ .++|++|++++| .+. .+|. +|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccc
Confidence 3456666677666555 4441 12346666666543322444433 246666666665 332 3332 344
Q ss_pred EEEccccccc--ccCCccccCCCCCcEEeeccCc-cc-ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688 154 YLYLSKNMLH--GGIPSTLSNCTYLRILSLAYND-FS-GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229 (244)
Q Consensus 154 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 229 (244)
.|++..+... ..+|. +|+.|.+.++. .. ...|.. -..+|++|++++|... .+|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 5555443321 12222 34455443221 10 011111 1145666666666644 3343332 35666666
Q ss_pred cCC
Q 048688 230 AEN 232 (244)
Q Consensus 230 ~~n 232 (244)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.76 E-value=0.00017 Score=50.40 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=36.7
Q ss_pred cCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688 72 QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151 (244)
Q Consensus 72 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 151 (244)
.|..+.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......+..+++++.+.+.. .+. .++...|...++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344444444444442 222223334444444555554442 3323333344444555555543 222 344444444555
Q ss_pred CcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183 (244)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (244)
++.+.+..+ +...-...+..+ .++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555433 221222334444 555554443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=4.4e-05 Score=58.79 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=19.0
Q ss_pred CCCCCcEEEecCC--ccCCCCCccccCCCCCCEEEccCCCCC
Q 048688 99 TTYTLKDVSFREN--QLTGVFPSFIFNKSSLQHLDFSRNTLS 138 (244)
Q Consensus 99 ~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (244)
.+++|++|.++.| ++.+-++.....+|+|+++++++|.+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4455555555555 333333333333455555555555553
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=1e-05 Score=62.97 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC--ccccCCCCCcEE
Q 048688 102 TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP--STLSNCTYLRIL 179 (244)
Q Consensus 102 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L 179 (244)
+.++|++.++.+.++ +....|+.|+.|.|+-|.|+ .+.+ + ..+++|++|.+..|.|.+ +. ..+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l-~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-L-QRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-H-HHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 344444444444322 12234455555555555554 3322 1 334445555555554432 11 233444555555
Q ss_pred eeccCccc
Q 048688 180 SLAYNDFS 187 (244)
Q Consensus 180 ~l~~n~~~ 187 (244)
.|..|+..
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 55555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=1.3e-05 Score=62.32 Aligned_cols=101 Identities=28% Similarity=0.404 Sum_probs=76.7
Q ss_pred CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCC-ccccCCCCCC
Q 048688 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP-KDIGNLTKLM 201 (244)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 201 (244)
.+.+.+.|+..|+.+. .| .++..++.|+.|.++-|.|+.. ..+..|++|+.|.|..|.|..... ..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3567788999999887 55 3557899999999999999732 457789999999999998863211 3457889999
Q ss_pred EEEccCCcccccCCc-----cccCCCCCCEEE
Q 048688 202 GLYLGRNRLQGEIPR-----EFGNLAELEQMS 228 (244)
Q Consensus 202 ~L~l~~n~l~~~~~~-----~l~~l~~L~~L~ 228 (244)
.|+|..|+-.+.-+. .+..+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999987654332 255678888875
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00037 Score=53.79 Aligned_cols=84 Identities=25% Similarity=0.241 Sum_probs=45.1
Q ss_pred CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC--CCCCcCChhhhCCCCCCcEEEcccccccccCCc---cccCC
Q 048688 99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN--TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS---TLSNC 173 (244)
Q Consensus 99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~ 173 (244)
.+..|+.|.+.+..++.. ..+-.+++|++|.++.| .+.+.+..-+ ...++|+++++++|.+.. +. .+..+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~--lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKD--LSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccc--ccccchhhhh
Confidence 344555555555554421 12335667777777777 4444443333 344677777777776652 22 23344
Q ss_pred CCCcEEeeccCccc
Q 048688 174 TYLRILSLAYNDFS 187 (244)
Q Consensus 174 ~~L~~L~l~~n~~~ 187 (244)
.+|..|++..|..+
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 55666666666544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.28 E-value=0.0026 Score=29.59 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=13.0
Q ss_pred CCCEEEccCCccCcccCCCCC
Q 048688 223 ELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~~~~ 243 (244)
+|++|++++|+++ .+|++|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777777 4555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.51 E-value=0.008 Score=27.90 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=10.9
Q ss_pred CCEEEccCCcccccCCcccc
Q 048688 200 LMGLYLGRNRLQGEIPREFG 219 (244)
Q Consensus 200 L~~L~l~~n~l~~~~~~~l~ 219 (244)
|++|++++|.++ .+|..++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 4554443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.49 E-value=0.00061 Score=58.59 Aligned_cols=92 Identities=23% Similarity=0.101 Sum_probs=44.5
Q ss_pred ccCCCCCCCCEEeCCCC-CCCCCC----CccccCCCCCcEEEecCCc-cCCCCCcccc-CCCCCCEEEccCCC-CCCcCC
Q 048688 71 SQLGNLSSLQSLDLSFN-RLSGSI----PSAIFTTYTLKDVSFRENQ-LTGVFPSFIF-NKSSLQHLDFSRNT-LSGEIP 142 (244)
Q Consensus 71 ~~~~~l~~L~~L~l~~n-~i~~~~----~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~-~l~~L~~L~l~~~~-~~~~l~ 142 (244)
.....+++|+.|+++++ ...... ......+++|+.|+++.+. ++...-..+. .+++|++|.+.++. ++..--
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 33445666666666652 111011 1122344566666666665 3322222222 25667776655554 332322
Q ss_pred hhhhCCCCCCcEEEcccccc
Q 048688 143 ANICSSLPFLDYLYLSKNML 162 (244)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~ 162 (244)
..+...++.|++|+++++..
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHhcCcccEEeeecCcc
Confidence 33334556677777766543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.90 E-value=0.021 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=6.5
Q ss_pred CCCEEEccCCccCc
Q 048688 223 ELEQMSLAENNLQA 236 (244)
Q Consensus 223 ~L~~L~l~~n~l~~ 236 (244)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45666666666554
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.69 E-value=0.024 Score=27.38 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=13.5
Q ss_pred CCCCEEEccCCccCcccCCCC
Q 048688 222 AELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++|+.|++++|+++.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777776655444
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.69 E-value=0.024 Score=27.38 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=13.5
Q ss_pred CCCCEEEccCCccCcccCCCC
Q 048688 222 AELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++|+.|++++|+++.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777776655444
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.00 E-value=0.068 Score=25.72 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=13.4
Q ss_pred CCCCEEEccCCCCCCcCChhhh
Q 048688 125 SSLQHLDFSRNTLSGEIPANIC 146 (244)
Q Consensus 125 ~~L~~L~l~~~~~~~~l~~~~~ 146 (244)
++|++|+|.+|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666777777666 6666553
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.00 E-value=0.068 Score=25.72 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=13.4
Q ss_pred CCCCEEEccCCCCCCcCChhhh
Q 048688 125 SSLQHLDFSRNTLSGEIPANIC 146 (244)
Q Consensus 125 ~~L~~L~l~~~~~~~~l~~~~~ 146 (244)
++|++|+|.+|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666777777666 6666553
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.65 E-value=8.7e-05 Score=63.53 Aligned_cols=182 Identities=25% Similarity=0.295 Sum_probs=106.7
Q ss_pred eEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCCCCCCcccc----CC-CCCcEEEecCCccCCC----CCccc
Q 048688 55 VTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSIPSAIF----TT-YTLKDVSFRENQLTGV----FPSFI 121 (244)
Q Consensus 55 l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l-~~L~~L~l~~~~l~~~----~~~~~ 121 (244)
+..+.+.+|.+... +...+.....|..|++++|.+.+.....+. .. ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55667777766532 445556677788888888877643222221 22 3466677777766543 22333
Q ss_pred cCCCCCCEEEccCCCCCC----cCChhhh---CCCCCCcEEEccccccccc----CCccccCCCC-CcEEeeccCccccc
Q 048688 122 FNKSSLQHLDFSRNTLSG----EIPANIC---SSLPFLDYLYLSKNMLHGG----IPSTLSNCTY-LRILSLAYNDFSGA 189 (244)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~----~l~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~-L~~L~l~~n~~~~~ 189 (244)
.....++.+++..|.+.. .++..+- ....++++|.+.+|.++.. +...+...+. +..+++..|.+-+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 446667777777776631 1112221 2456678888877776521 2223344444 66677777766422
Q ss_pred ----CCccccCC-CCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCc
Q 048688 190 ----VPKDIGNL-TKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 190 ----~~~~~~~~-~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
..+.+... ..++++++..|.+++ .+...+..+++++.+.++.|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22333334 567888888888775 334555677788888888887654
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.005 Score=45.99 Aligned_cols=83 Identities=17% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccc-cccCCcccc-CCCCCcEEeeccCc-ccccCCccccCCCCC
Q 048688 124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML-HGGIPSTLS-NCTYLRILSLAYND-FSGAVPKDIGNLTKL 200 (244)
Q Consensus 124 l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L 200 (244)
-..++.++-++..|...-..++ .+++.++.|.+.+|.- .+.--+.++ -.++|+.|++++|+ |+...-..+..+++|
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred cceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3457777877777764444455 6677777777776642 111111111 34678888888774 665555566677777
Q ss_pred CEEEccC
Q 048688 201 MGLYLGR 207 (244)
Q Consensus 201 ~~L~l~~ 207 (244)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777755
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.95 E-value=0.0019 Score=49.41 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 048688 148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM 227 (244)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 227 (244)
.......||++.|+.- .+-..+..++.+..|+++.|.+. ..|..++....+.++++..|..+ ..|.+++..++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444555555555443 33334444555555566655554 45555555555555555555554 555566666666666
Q ss_pred EccCCcc
Q 048688 228 SLAENNL 234 (244)
Q Consensus 228 ~l~~n~l 234 (244)
++-+|++
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6665553
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.26 E-value=0.021 Score=49.07 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCC-ccCCCC----CccccCCCCCCEEEccCCC-CCCcCChhhh
Q 048688 75 NLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFREN-QLTGVF----PSFIFNKSSLQHLDFSRNT-LSGEIPANIC 146 (244)
Q Consensus 75 ~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~-~~~~l~~~~~ 146 (244)
.++.|+.+.+..+.-... .......++.|+.|+++++ ...... ......+++|+.++++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777787776533212 2344557788888888763 111111 1233456788888888877 5433333333
Q ss_pred CCCCCCcEEEccccc-ccc-cCCccccCCCCCcEEeeccCcc
Q 048688 147 SSLPFLDYLYLSKNM-LHG-GIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 147 ~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
..+++|++|.+..+. +++ .+-.....++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 346788888876665 442 2223345677788888887753
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.01 E-value=0.0015 Score=56.02 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=105.6
Q ss_pred CCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCCCCCc----cccCC-CCCCEEEccCCCCCCc----CChhh
Q 048688 79 LQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTGVFPS----FIFNK-SSLQHLDFSRNTLSGE----IPANI 145 (244)
Q Consensus 79 L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----l~~~~ 145 (244)
+..+.+.+|.+.+. +...+...+.|+.|++++|.+.+.... .+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 78889999888743 334556788999999999988743221 22232 5678888888877643 33344
Q ss_pred hCCCCCCcEEEcccccccc----cCCcccc----CCCCCcEEeeccCccccc----CCccccCCCC-CCEEEccCCcccc
Q 048688 146 CSSLPFLDYLYLSKNMLHG----GIPSTLS----NCTYLRILSLAYNDFSGA----VPKDIGNLTK-LMGLYLGRNRLQG 212 (244)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~l~~ 212 (244)
.....++.+++..|.+.. .++..+. ...++++|.+.+|.++.. +...+...+. +..+++..|.+.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 346778888888887631 2333333 467899999999887521 1122333344 6679999998875
Q ss_pred c----CCccccCC-CCCCEEEccCCccCcc
Q 048688 213 E----IPREFGNL-AELEQMSLAENNLQAL 237 (244)
Q Consensus 213 ~----~~~~l~~l-~~L~~L~l~~n~l~~~ 237 (244)
. +...+..+ ..+++++++.|.|+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 3 33445566 6789999999998764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=0.038 Score=41.42 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCc-CChhhhCCCCCCcEEEcccc-cccccCCccccCCCCC
Q 048688 99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGE-IPANICSSLPFLDYLYLSKN-MLHGGIPSTLSNCTYL 176 (244)
Q Consensus 99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L 176 (244)
.-..++.++-+++.|....-..+..+++++.|.+.++..-+. -...+-.-.++|+.|++++| +|+..--..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 344577788777777655445566778888888877753211 11122123578888888877 4554434456667777
Q ss_pred cEEeecc
Q 048688 177 RILSLAY 183 (244)
Q Consensus 177 ~~L~l~~ 183 (244)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7776654
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.31 E-value=0.24 Score=23.20 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCCCCEEEccCCccCcc
Q 048688 221 LAELEQMSLAENNLQAL 237 (244)
Q Consensus 221 l~~L~~L~l~~n~l~~~ 237 (244)
+++|+.|+|++|+|+..
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 35677777777776543
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.64 E-value=0.23 Score=41.49 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCCCCCEEEccCCCCCCcC-ChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCc-ccccC----Cccc
Q 048688 123 NKSSLQHLDFSRNTLSGEI-PANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYND-FSGAV----PKDI 194 (244)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~l-~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~-~~~~~----~~~~ 194 (244)
+.++|+.+.+.++.--+.. ...+-.+.+.|+.+++.++... +.+...-.+++.|+.+.++++. ++... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 4566666666665421111 1122234556666666665432 1222233456777777777664 33221 1112
Q ss_pred cCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccCCc
Q 048688 195 GNLTKLMGLYLGRNRLQ-GEIPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 195 ~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 233 (244)
.....+..+-+.+++.. +..-..+..+++|+.+++-+++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 33455667777777643 2333445667777777776664
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.19 E-value=0.68 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=12.0
Q ss_pred CCCCEEEccCCccCccc
Q 048688 222 AELEQMSLAENNLQALL 238 (244)
Q Consensus 222 ~~L~~L~l~~n~l~~~~ 238 (244)
.+|+.|+++.|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 56777778777776653
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.63 E-value=0.011 Score=45.31 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=62.3
Q ss_pred cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688 96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175 (244)
Q Consensus 96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 175 (244)
.+........|+++.|++. ..-..++-+..+..|+++.|.+. .+|.+. .....+..++...|... ..|..++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4455667777888887765 23334556677778888888886 777766 56666677777666666 67888888888
Q ss_pred CcEEeeccCccc
Q 048688 176 LRILSLAYNDFS 187 (244)
Q Consensus 176 L~~L~l~~n~~~ 187 (244)
++.+++-.+.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888777654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.32 E-value=1.2 Score=21.51 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=11.7
Q ss_pred CCCCEEEccCCccCccc
Q 048688 222 AELEQMSLAENNLQALL 238 (244)
Q Consensus 222 ~~L~~L~l~~n~l~~~~ 238 (244)
++|+.|++++|+++.+.
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 35677777777777654
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.56 E-value=1.6 Score=21.33 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=10.6
Q ss_pred CCCCEEEccCCccC
Q 048688 222 AELEQMSLAENNLQ 235 (244)
Q Consensus 222 ~~L~~L~l~~n~l~ 235 (244)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888775
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=59.83 E-value=7.4 Score=32.97 Aligned_cols=154 Identities=21% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCceEEEEeCCCcc-eec-cCccCCCCCCCCEEeCCCCC-CCCCCCccc-cCCCCCcEEEecCCccC--CCCCccccCCC
Q 048688 52 SHKVTALNISGLNL-TGT-IPSQLGNLSSLQSLDLSFNR-LSGSIPSAI-FTTYTLKDVSFRENQLT--GVFPSFIFNKS 125 (244)
Q Consensus 52 ~~~l~~L~l~~~~~-~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l-~~l~~L~~L~l~~~~l~--~~~~~~~~~l~ 125 (244)
..+++.++.+++.- ... +...-.+..+|+.+.++.++ +++.--..+ .+++.|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 56777888877743 211 22233467889999998875 221111112 35678898888887643 22333345788
Q ss_pred CCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccc-ccCCccccCCCCCcEEeeccCc-cccc-CCccccCCC
Q 048688 126 SLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLH-GGIPSTLSNCTYLRILSLAYND-FSGA-VPKDIGNLT 198 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~-~~~~~~~~~ 198 (244)
.|+.+.++.+...... ....-..+..+..+.+.++... ...-+.+..+++|+.+++-.+. ++.. +.+.-.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 9999999866432111 0111134667888888887653 3344567788899998888774 3221 122223556
Q ss_pred CCCEEEc
Q 048688 199 KLMGLYL 205 (244)
Q Consensus 199 ~L~~L~l 205 (244)
+++...+
T Consensus 453 ~i~v~a~ 459 (483)
T KOG4341|consen 453 NIKVHAY 459 (483)
T ss_pred cceehhh
Confidence 6555543
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.92 E-value=7 Score=18.50 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=9.8
Q ss_pred CCCCCEEEccCCc
Q 048688 221 LAELEQMSLAENN 233 (244)
Q Consensus 221 l~~L~~L~l~~n~ 233 (244)
+++|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888875
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.62 E-value=3.6 Score=35.91 Aligned_cols=64 Identities=27% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCCCCCcEEEccccccccc--CCccccCCCCCcEEeeccC--cccccCCcccc--CCCCCCEEEccCCcccc
Q 048688 147 SSLPFLDYLYLSKNMLHGG--IPSTLSNCTYLRILSLAYN--DFSGAVPKDIG--NLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n--~~~~~~~~~~~--~~~~L~~L~l~~n~l~~ 212 (244)
.+.+.+..+++++|++... +...-...++|..|+|++| .+. . ..++. +...|++|.+.||++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCcccc
Confidence 3455666667777765421 1122234566777777777 222 1 11121 22346777777777653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.87 E-value=9.9 Score=33.34 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=6.4
Q ss_pred CCCCcEEEecCC
Q 048688 100 TYTLKDVSFREN 111 (244)
Q Consensus 100 l~~L~~L~l~~~ 111 (244)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555555
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.62 E-value=35 Score=36.27 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=25.5
Q ss_pred EecCCccCCCCCccccCCCCCCEEEccCCCCC
Q 048688 107 SFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS 138 (244)
Q Consensus 107 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (244)
+|++|+|+.+.+..|..+++|++|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788888666677888888999999888765
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.27 E-value=48 Score=35.34 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=26.1
Q ss_pred EcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 156 YLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 156 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
+|++|.|+...+..|..+++|+.|+|.+|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788898555567888999999999999875
No 94
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=23.43 E-value=67 Score=17.85 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=18.6
Q ss_pred CcccCCchhHHHHHHHHHHhcccC
Q 048688 2 TANTRTITTDQDALLALKAHITHD 25 (244)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~ 25 (244)
.+.......++..|+++|.-+.++
T Consensus 21 KA~k~~i~~eV~~LL~LKaqlg~~ 44 (45)
T cd00938 21 KASKEQIAEEVAKLLELKAQLGGD 44 (45)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 456667788999999999887543
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.97 E-value=1e+02 Score=26.93 Aligned_cols=84 Identities=24% Similarity=0.222 Sum_probs=35.8
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccc---cCCCCCCEEEccCCCCCCcCChhh--hCCCCC
Q 048688 77 SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFI---FNKSSLQHLDFSRNTLSGEIPANI--CSSLPF 151 (244)
Q Consensus 77 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~---~~l~~L~~L~l~~~~~~~~l~~~~--~~~~~~ 151 (244)
+.+++++++.|.+.+..|..+..-.. -+.++.+..+....+.+ ..-..+.+++++.|.....+|..+ ......
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 34566677777666554444322111 13333333322111111 011235666666666554554432 111223
Q ss_pred CcEEEcccccc
Q 048688 152 LDYLYLSKNML 162 (244)
Q Consensus 152 L~~L~l~~~~~ 162 (244)
++.++.+...+
T Consensus 243 l~~ld~s~tgi 253 (553)
T KOG4242|consen 243 LFKLDRSTTGI 253 (553)
T ss_pred hhccccccccc
Confidence 45555555444
Done!