Query 048688
Match_columns 244
No_of_seqs 195 out of 2935
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 8.4E-35 2.9E-39 235.1 18.4 229 6-239 2-238 (313)
2 4fcg_A Uncharacterized protein 100.0 3E-32 1E-36 221.5 13.5 232 6-242 23-297 (328)
3 4eco_A Uncharacterized protein 100.0 7E-32 2.4E-36 237.2 12.2 226 5-235 25-366 (636)
4 3rgz_A Protein brassinosteroid 100.0 9.2E-31 3.1E-35 234.7 18.0 227 4-238 6-263 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 7.1E-30 2.4E-34 229.5 14.2 226 4-242 263-614 (876)
6 2o6q_A Variable lymphocyte rec 100.0 1.2E-26 4E-31 183.6 19.2 184 53-237 37-220 (270)
7 3rgz_A Protein brassinosteroid 99.9 3.8E-27 1.3E-31 211.3 16.3 190 52-241 465-723 (768)
8 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-27 9.9E-32 191.0 12.6 188 51-240 74-286 (313)
9 3m19_A Variable lymphocyte rec 99.9 5.4E-26 1.8E-30 177.9 18.0 192 39-237 3-194 (251)
10 2o6q_A Variable lymphocyte rec 99.9 1.7E-25 5.8E-30 176.9 20.5 200 38-242 2-201 (270)
11 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-26 1.8E-30 181.1 17.0 183 53-236 56-239 (285)
12 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.8E-30 178.2 18.0 188 52-240 31-219 (285)
13 4fcg_A Uncharacterized protein 99.9 6.8E-26 2.3E-30 184.0 15.3 163 75-243 79-250 (328)
14 2z66_A Variable lymphocyte rec 99.9 8.1E-25 2.8E-29 176.0 18.4 203 39-242 5-243 (306)
15 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.5E-29 182.7 18.7 188 52-242 63-275 (440)
16 3zyi_A Leucine-rich repeat-con 99.9 2.3E-24 8E-29 182.3 19.4 188 52-242 74-286 (452)
17 3rfs_A Internalin B, repeat mo 99.9 5.1E-24 1.8E-28 168.6 19.3 183 52-239 40-222 (272)
18 1xku_A Decorin; proteoglycan, 99.9 1.5E-23 5E-28 170.4 19.9 204 39-243 29-284 (330)
19 1p9a_G Platelet glycoprotein I 99.9 7.4E-24 2.5E-28 169.2 17.8 180 52-236 30-209 (290)
20 2z80_A TOLL-like receptor 2, v 99.9 5E-25 1.7E-29 180.6 11.1 206 34-241 23-241 (353)
21 3zyi_A Leucine-rich repeat-con 99.9 7.2E-24 2.5E-28 179.3 18.3 182 55-242 56-262 (452)
22 3rfs_A Internalin B, repeat mo 99.9 3E-24 1E-28 169.9 14.9 183 51-243 61-243 (272)
23 2xwt_C Thyrotropin receptor; s 99.9 7E-24 2.4E-28 164.7 15.7 187 52-242 30-225 (239)
24 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-23 9.9E-28 168.8 20.0 200 39-243 31-285 (332)
25 2z62_A TOLL-like receptor 4, v 99.9 5.7E-24 2E-28 168.6 15.3 185 54-239 29-241 (276)
26 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.9E-28 176.9 18.6 184 55-242 45-251 (440)
27 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.3E-28 177.7 18.2 136 53-188 30-168 (455)
28 3v47_A TOLL-like receptor 5B a 99.9 1E-23 3.4E-28 178.4 17.1 87 52-138 78-167 (455)
29 2z66_A Variable lymphocyte rec 99.9 4.9E-24 1.7E-28 171.4 14.4 184 52-237 77-263 (306)
30 3oja_B Anopheles plasmodium-re 99.9 8.9E-24 3E-28 184.5 16.3 132 54-186 52-183 (597)
31 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.9E-28 165.8 16.1 163 51-214 50-240 (276)
32 1p9a_G Platelet glycoprotein I 99.9 5.1E-23 1.7E-27 164.3 18.8 182 52-240 9-190 (290)
33 2id5_A Lingo-1, leucine rich r 99.9 1.9E-23 6.6E-28 177.7 17.4 188 52-240 31-218 (477)
34 3o6n_A APL1; leucine-rich repe 99.9 1.7E-23 5.6E-28 173.8 15.9 133 53-186 45-177 (390)
35 4eco_A Uncharacterized protein 99.9 5.9E-24 2E-28 186.8 10.3 188 51-243 204-423 (636)
36 2id5_A Lingo-1, leucine rich r 99.9 9.6E-23 3.3E-27 173.4 17.3 191 52-243 55-293 (477)
37 3t6q_A CD180 antigen; protein- 99.9 1.6E-22 5.6E-27 176.7 19.1 186 54-240 255-443 (606)
38 3t6q_A CD180 antigen; protein- 99.9 8.1E-23 2.8E-27 178.7 16.6 147 96-242 371-520 (606)
39 3o6n_A APL1; leucine-rich repe 99.9 2.8E-22 9.7E-27 166.4 18.5 111 52-163 68-178 (390)
40 1wwl_A Monocyte differentiatio 99.9 2.4E-23 8.1E-28 167.9 11.1 182 52-237 94-289 (312)
41 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-23 8.9E-28 179.7 12.0 184 52-237 25-211 (549)
42 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-23 2.1E-27 179.4 14.1 183 52-236 349-535 (606)
43 2z80_A TOLL-like receptor 2, v 99.9 2.8E-23 9.6E-28 170.2 11.0 137 50-187 73-211 (353)
44 3m19_A Variable lymphocyte rec 99.9 4.5E-22 1.6E-26 155.6 17.2 161 52-213 34-194 (251)
45 3vq2_A TLR4, TOLL-like recepto 99.9 8.7E-23 3E-27 178.5 14.5 186 51-239 374-562 (606)
46 3oja_B Anopheles plasmodium-re 99.9 3.5E-22 1.2E-26 174.5 18.2 112 52-164 74-185 (597)
47 2o6s_A Variable lymphocyte rec 99.9 1.5E-22 5E-27 153.9 13.7 157 78-242 29-185 (208)
48 2o6s_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 152.0 15.3 178 38-223 4-190 (208)
49 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-22 7E-27 182.3 15.3 199 42-242 15-224 (844)
50 1wwl_A Monocyte differentiatio 99.9 4.1E-23 1.4E-27 166.6 9.3 182 50-237 118-311 (312)
51 2z63_A TOLL-like receptor 4, v 99.9 2.2E-22 7.4E-27 174.6 14.3 188 51-240 345-536 (570)
52 1ziw_A TOLL-like receptor 3; i 99.9 9.7E-22 3.3E-26 174.0 17.1 186 54-240 382-602 (680)
53 4glp_A Monocyte differentiatio 99.9 2E-22 7E-27 162.3 10.9 181 53-237 91-287 (310)
54 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-21 3.9E-26 168.5 15.6 161 74-238 321-484 (520)
55 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-21 1.1E-25 170.8 18.7 191 51-242 351-580 (680)
56 4ecn_A Leucine-rich repeat pro 99.9 2.6E-22 8.9E-27 180.6 11.8 184 51-240 446-662 (876)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-21 7.2E-26 168.4 16.6 161 74-238 350-513 (562)
58 2z63_A TOLL-like receptor 4, v 99.9 8.2E-22 2.8E-26 171.0 13.6 188 53-243 325-515 (570)
59 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-21 1.5E-25 173.6 18.7 192 51-242 71-358 (844)
60 1h6u_A Internalin H; cell adhe 99.9 2.6E-21 8.9E-26 155.7 14.8 172 51-237 61-232 (308)
61 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-21 2.9E-25 154.2 17.9 187 51-242 76-316 (332)
62 1xku_A Decorin; proteoglycan, 99.9 6.5E-21 2.2E-25 154.7 16.6 177 55-236 123-307 (330)
63 3oja_A Leucine-rich immune mol 99.9 8E-22 2.7E-26 168.1 11.0 184 52-242 33-233 (487)
64 3e6j_A Variable lymphocyte rec 99.9 1.3E-20 4.5E-25 145.3 16.7 161 34-211 12-172 (229)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-22 6.6E-27 163.0 6.8 179 51-235 56-250 (317)
66 1h6u_A Internalin H; cell adhe 99.9 1.5E-20 5.1E-25 151.3 17.0 173 52-239 40-212 (308)
67 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-21 2E-25 164.0 15.3 84 51-137 43-127 (520)
68 3e6j_A Variable lymphocyte rec 99.9 2.6E-20 9E-25 143.6 17.2 155 79-238 21-175 (229)
69 2xot_A Amphoterin-induced prot 99.9 3.8E-21 1.3E-25 158.1 12.7 176 57-236 22-203 (361)
70 2v9t_B SLIT homolog 2 protein 99.9 1.8E-20 6.3E-25 143.6 15.7 152 57-212 15-166 (220)
71 2xwt_C Thyrotropin receptor; s 99.9 7.1E-21 2.4E-25 147.6 13.2 176 51-233 53-237 (239)
72 2v70_A SLIT-2, SLIT homolog 2 99.9 2E-20 6.8E-25 143.4 15.4 152 57-212 15-167 (220)
73 4glp_A Monocyte differentiatio 99.9 1.6E-21 5.6E-26 157.0 9.7 180 51-236 115-308 (310)
74 2v9t_B SLIT homolog 2 protein 99.9 2.3E-20 7.9E-25 143.0 15.4 148 39-187 9-165 (220)
75 1h6t_A Internalin B; cell adhe 99.8 2.1E-20 7.1E-25 149.2 15.4 171 52-237 45-215 (291)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-20 6.6E-25 162.3 15.8 107 52-163 51-159 (562)
77 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-20 9.2E-25 163.0 16.1 180 53-234 52-236 (635)
78 4fmz_A Internalin; leucine ric 99.8 1.8E-20 6.1E-25 153.1 13.8 176 51-239 153-328 (347)
79 3oja_A Leucine-rich immune mol 99.8 6.5E-21 2.2E-25 162.5 11.6 179 51-235 56-250 (487)
80 4fmz_A Internalin; leucine ric 99.8 4.4E-20 1.5E-24 150.7 15.6 171 52-235 176-346 (347)
81 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-20 7.2E-25 163.7 13.9 180 59-242 37-221 (635)
82 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-20 1.3E-24 159.9 14.4 183 40-237 3-187 (549)
83 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.5E-24 138.3 15.8 133 54-187 33-166 (220)
84 4ezg_A Putative uncharacterize 99.8 5.8E-20 2E-24 138.4 12.0 154 74-236 41-195 (197)
85 1o6v_A Internalin A; bacterial 99.8 1.8E-19 6.1E-24 152.9 16.2 106 122-236 284-389 (466)
86 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.2E-24 157.4 15.4 171 52-237 42-212 (605)
87 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 148.9 13.4 200 41-242 9-222 (350)
88 1o6v_A Internalin A; bacterial 99.8 2.5E-19 8.5E-24 152.0 15.6 174 51-239 197-370 (466)
89 1xeu_A Internalin C; cellular 99.8 4.4E-20 1.5E-24 145.3 9.5 151 73-237 37-187 (263)
90 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-18 8.5E-23 145.4 19.6 171 52-241 63-252 (457)
91 3cvr_A Invasion plasmid antige 99.8 2.9E-19 9.8E-24 154.3 13.6 186 30-241 33-249 (571)
92 4ezg_A Putative uncharacterize 99.8 4.9E-19 1.7E-23 133.3 12.8 152 52-212 43-195 (197)
93 4b8c_D Glucose-repressible alc 99.8 4.1E-21 1.4E-25 170.8 1.4 229 4-242 126-361 (727)
94 3o53_A Protein LRIM1, AGAP0063 99.8 4.1E-20 1.4E-24 149.3 7.1 176 52-240 33-209 (317)
95 3cvr_A Invasion plasmid antige 99.8 4.1E-19 1.4E-23 153.4 13.7 135 78-236 60-194 (571)
96 2ast_B S-phase kinase-associat 99.8 7.2E-21 2.5E-25 154.7 2.5 179 53-232 93-282 (336)
97 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.4E-24 147.0 12.0 172 39-211 16-202 (361)
98 2ast_B S-phase kinase-associat 99.8 9.8E-21 3.3E-25 153.9 2.6 179 53-233 70-258 (336)
99 3bz5_A Internalin-J, INLJ; leu 99.8 5.1E-18 1.7E-22 143.5 18.1 164 52-236 41-226 (457)
100 2ca6_A RAN GTPase-activating p 99.8 5.1E-21 1.7E-25 158.6 -2.4 187 52-238 93-319 (386)
101 1h6t_A Internalin B; cell adhe 99.8 7.4E-18 2.5E-22 134.4 14.8 152 73-237 42-193 (291)
102 2ca6_A RAN GTPase-activating p 99.8 5.7E-20 2E-24 152.3 1.3 186 51-236 58-288 (386)
103 1w8a_A SLIT protein; signaling 99.8 1.1E-17 3.6E-22 125.5 13.5 131 80-214 11-142 (192)
104 3goz_A Leucine-rich repeat-con 99.8 9.2E-20 3.2E-24 149.8 2.2 85 54-138 23-122 (362)
105 3g06_A SSPH2 (leucine-rich rep 99.7 2.2E-17 7.4E-22 144.1 14.7 82 150-240 221-302 (622)
106 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.1E-22 144.0 14.0 150 51-213 63-212 (605)
107 2ell_A Acidic leucine-rich nuc 99.7 2.3E-17 7.7E-22 121.0 12.0 131 77-211 24-160 (168)
108 2ell_A Acidic leucine-rich nuc 99.7 9.7E-18 3.3E-22 122.9 9.9 138 99-239 22-164 (168)
109 1jl5_A Outer protein YOPM; leu 99.7 1.7E-16 5.7E-21 134.1 17.9 160 53-235 91-250 (454)
110 3goz_A Leucine-rich repeat-con 99.7 3.7E-19 1.3E-23 146.3 1.6 180 57-236 2-210 (362)
111 1jl5_A Outer protein YOPM; leu 99.7 2.2E-16 7.7E-21 133.4 18.1 161 53-236 131-291 (454)
112 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-17 7.2E-22 144.2 12.2 160 30-211 12-194 (622)
113 1xeu_A Internalin C; cellular 99.7 7.1E-17 2.4E-21 126.9 13.7 148 52-213 40-187 (263)
114 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.7E-21 119.9 13.7 131 56-190 11-142 (192)
115 2wfh_A SLIT homolog 2 protein 99.7 1.3E-16 4.4E-21 119.6 13.8 127 80-211 13-139 (193)
116 1dce_A Protein (RAB geranylger 99.7 1.9E-20 6.6E-25 162.0 -9.1 109 126-240 442-551 (567)
117 2o6r_A Variable lymphocyte rec 99.7 2.2E-16 7.7E-21 116.6 13.9 131 79-213 9-139 (177)
118 4b8c_D Glucose-repressible alc 99.7 2.5E-18 8.5E-23 153.0 3.3 123 68-195 215-337 (727)
119 2wfh_A SLIT homolog 2 protein 99.7 5.2E-16 1.8E-20 116.3 14.0 127 56-187 13-139 (193)
120 2je0_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 116.5 8.0 127 77-206 17-148 (149)
121 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 3E-21 115.5 8.8 127 101-230 17-148 (149)
122 2o6r_A Variable lymphocyte rec 99.7 6.8E-16 2.3E-20 114.0 13.8 130 57-190 11-140 (177)
123 1z7x_W Ribonuclease inhibitor; 99.7 4.1E-19 1.4E-23 150.2 -4.5 184 54-237 200-413 (461)
124 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.4E-23 146.2 -3.9 15 52-66 112-126 (461)
125 4ay9_X Follicle-stimulating ho 99.7 1.6E-15 5.5E-20 124.0 13.4 178 50-232 51-233 (350)
126 1a9n_A U2A', U2A'; complex (nu 99.7 3E-16 1E-20 115.9 8.1 132 73-211 15-153 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.6 5.2E-16 1.8E-20 114.6 8.5 136 95-236 13-154 (176)
128 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.8E-20 123.9 10.8 189 52-243 48-318 (329)
129 1ds9_A Outer arm dynein; leuci 99.6 2E-18 6.7E-23 130.1 -7.8 133 96-236 43-186 (198)
130 3g39_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 106.4 11.5 104 104-211 12-115 (170)
131 2r9u_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 104.5 11.6 104 104-211 15-118 (174)
132 1ds9_A Outer arm dynein; leuci 99.5 1.4E-17 4.7E-22 125.5 -8.2 150 54-211 19-185 (198)
133 3sb4_A Hypothetical leucine ri 99.5 6.8E-14 2.3E-18 113.3 12.6 174 52-229 100-328 (329)
134 1dce_A Protein (RAB geranylger 99.5 6.1E-14 2.1E-18 121.4 12.6 171 52-229 348-567 (567)
135 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 101.2 11.9 103 57-163 13-115 (170)
136 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 5E-18 101.2 11.4 104 56-163 15-118 (174)
137 4fdw_A Leucine rich hypothetic 99.4 5.2E-12 1.8E-16 104.9 16.1 180 55-242 159-365 (401)
138 3un9_A NLR family member X1; l 99.4 8.7E-15 3E-19 120.4 -2.8 160 53-213 72-254 (372)
139 3un9_A NLR family member X1; l 99.4 3.1E-15 1.1E-19 123.1 -7.0 162 76-237 71-254 (372)
140 2ifg_A High affinity nerve gro 99.4 3.2E-12 1.1E-16 104.1 10.6 103 105-211 12-116 (347)
141 4fdw_A Leucine rich hypothetic 99.4 2.7E-11 9.4E-16 100.5 16.0 181 54-242 136-342 (401)
142 3ogk_B Coronatine-insensitive 99.4 9.4E-14 3.2E-18 120.9 1.1 101 55-157 140-250 (592)
143 3ogk_B Coronatine-insensitive 99.3 7.1E-14 2.4E-18 121.6 -0.4 82 99-182 162-251 (592)
144 2ifg_A High affinity nerve gro 99.3 9.5E-12 3.3E-16 101.3 10.2 102 58-163 13-116 (347)
145 2p1m_B Transport inhibitor res 99.3 2.1E-13 7.3E-18 118.6 -1.1 109 52-160 104-221 (594)
146 2p1m_B Transport inhibitor res 99.2 6.8E-14 2.3E-18 121.8 -5.9 134 100-235 371-519 (594)
147 2ra8_A Uncharacterized protein 99.1 5.5E-11 1.9E-15 97.2 4.3 182 52-236 106-321 (362)
148 2ra8_A Uncharacterized protein 99.0 1.2E-10 3.9E-15 95.3 1.6 177 52-233 138-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 4.1E-09 1.4E-13 78.1 1.3 62 173-234 92-163 (185)
150 1io0_A Tropomodulin; LRR prote 98.5 4.3E-09 1.5E-13 77.9 -1.6 62 150-211 93-164 (185)
151 3e4g_A ATP synthase subunit S, 98.4 5.6E-08 1.9E-12 70.7 1.9 84 125-209 61-150 (176)
152 4fs7_A Uncharacterized protein 98.4 3.9E-06 1.3E-10 69.3 13.1 173 51-232 183-376 (394)
153 4fs7_A Uncharacterized protein 98.4 5.4E-06 1.8E-10 68.5 13.5 185 48-242 157-362 (394)
154 4gt6_A Cell surface protein; l 98.3 2.4E-05 8.3E-10 64.5 15.9 109 120-233 260-368 (394)
155 4h09_A Hypothetical leucine ri 98.3 1.3E-05 4.3E-10 65.8 14.1 129 99-232 215-343 (379)
156 3rw6_A Nuclear RNA export fact 98.3 5.8E-07 2E-11 70.0 5.6 95 82-180 148-257 (267)
157 3rw6_A Nuclear RNA export fact 98.3 4E-07 1.4E-11 71.0 4.5 79 148-228 168-257 (267)
158 4gt6_A Cell surface protein; l 98.3 8.3E-06 2.8E-10 67.3 12.2 132 95-234 259-390 (394)
159 4h09_A Hypothetical leucine ri 98.3 1.4E-05 4.9E-10 65.5 13.1 149 69-223 209-357 (379)
160 3e4g_A ATP synthase subunit S, 98.3 2.7E-07 9.3E-12 67.1 2.1 13 172-184 137-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 3.1E-05 1.1E-09 57.3 1.4 109 124-233 40-168 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00098 3.3E-08 45.9 6.1 56 154-211 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00024 8.2E-09 52.5 2.5 86 147-232 38-136 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0038 1.3E-07 42.9 6.3 36 126-162 32-67 (130)
165 2lz0_A Uncharacterized protein 85.3 3.2 0.00011 26.6 6.3 47 64-111 7-53 (100)
166 2lz0_A Uncharacterized protein 71.2 11 0.00036 24.1 5.3 46 162-208 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.4e-35 Score=235.13 Aligned_cols=229 Identities=35% Similarity=0.571 Sum_probs=183.7
Q ss_pred CCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcc--eeeeeeCCCC--CceEEEEeCCCccee--ccCccCCCCCCC
Q 048688 6 RTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDVHS--HKVTALNISGLNLTG--TIPSQLGNLSSL 79 (244)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~~l~~L 79 (244)
.+...|+.||++||+++. ++. .+.. |..+.++|. |.|+.|.... .+|+.|+++++.+.+ .+|..|..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 356789999999999994 554 5666 988889998 9999998643 789999999999998 889999999999
Q ss_pred CEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688 80 QSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158 (244)
Q Consensus 80 ~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~ 158 (244)
++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+ ..+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence 9999994 88888899999999999999999999988888888889999999999998886777766 778888888888
Q ss_pred cccccccCCccccCCC-CCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 159 KNMLHGGIPSTLSNCT-YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 159 ~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+|.+++.+|..+..++ +|+.|++++|.+++..|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 8888877888888776 788888888877766666666555 66666666666655555555555555555555555544
Q ss_pred cC
Q 048688 238 LL 239 (244)
Q Consensus 238 ~~ 239 (244)
+|
T Consensus 237 ~~ 238 (313)
T 1ogq_A 237 LG 238 (313)
T ss_dssp GG
T ss_pred cC
Confidence 33
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=3e-32 Score=221.49 Aligned_cols=232 Identities=20% Similarity=0.249 Sum_probs=145.1
Q ss_pred CCchhHHHHHHHHHHhcccCCcchhcCCC----CCCCCCcceeeeeeC--------CCCCceEEEEeCCCcceeccCccC
Q 048688 6 RTITTDQDALLALKAHITHDPTNFLAKNW----NTSAPVCNWTGVTCD--------VHSHKVTALNISGLNLTGTIPSQL 73 (244)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~~~--------~~~~~l~~L~l~~~~~~~~~~~~~ 73 (244)
.....++.+|++||..+..++..+.+. | ....++|.|.|+.|. ....+++.|+++++.+. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 345678999999999997788778877 8 566789999999884 23467777777777776 566666
Q ss_pred CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhh-------
Q 048688 74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC------- 146 (244)
Q Consensus 74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~------- 146 (244)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 66777777777777776 66666777777777777777666 5566666666666666666555445544331
Q ss_pred -CCCCCCcEEEcccccccccCCcc-----------------------ccCCCCCcEEeeccCcccccCCccccCCCCCCE
Q 048688 147 -SSLPFLDYLYLSKNMLHGGIPST-----------------------LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMG 202 (244)
Q Consensus 147 -~~~~~L~~L~l~~~~~~~~~~~~-----------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 202 (244)
..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 12444555555555444 44444 444455555555555444444545555555555
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 203 LYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 203 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 5555555544555555555555555555555555555443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7e-32 Score=237.17 Aligned_cols=226 Identities=21% Similarity=0.356 Sum_probs=177.0
Q ss_pred cCCchhHHHHHHHHHHhcccCCcchhc------CCCCCCCCCcce---eeeeeCCCCCceEEEEeCCCcceeccCccCCC
Q 048688 5 TRTITTDQDALLALKAHITHDPTNFLA------KNWNTSAPVCNW---TGVTCDVHSHKVTALNISGLNLTGTIPSQLGN 75 (244)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~w~~~~~~c~~---~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 75 (244)
+.+...|+.||.+|++++.+..|.+.+ .+|..+.++|.| .||.|+.. .+|+.|+++++.+.|.+|+.++.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 345567999999999999655544322 259999999999 99999864 79999999999999999999999
Q ss_pred CCCCCEEeCCCCCC------------------------------------------------------------------
Q 048688 76 LSSLQSLDLSFNRL------------------------------------------------------------------ 89 (244)
Q Consensus 76 l~~L~~L~l~~n~i------------------------------------------------------------------ 89 (244)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999988843
Q ss_pred ------------CCCCCccccCCCCCcEEEecCCccCCC-----------------CCcccc--CCCCCCEEEccCCCCC
Q 048688 90 ------------SGSIPSAIFTTYTLKDVSFRENQLTGV-----------------FPSFIF--NKSSLQHLDFSRNTLS 138 (244)
Q Consensus 90 ------------~~~~~~~l~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~ 138 (244)
++ +|..+..+++|++|++++|.+++. +|..+. .+++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 23 677788899999999999999874 888888 8999999999999988
Q ss_pred CcCChhhhCCCCCCcEEEccccc-ccc-cCCccccCC------CCCcEEeeccCcccccCCc--cccCCCCCCEEEccCC
Q 048688 139 GEIPANICSSLPFLDYLYLSKNM-LHG-GIPSTLSNC------TYLRILSLAYNDFSGAVPK--DIGNLTKLMGLYLGRN 208 (244)
Q Consensus 139 ~~l~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n 208 (244)
+.+|..+ ..+++|++|++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|. .+..+++|++|++++|
T Consensus 263 ~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred ccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 8888777 788888999988887 776 566666554 67777777777776 5665 6667777777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCccC
Q 048688 209 RLQGEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 209 ~l~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
.+++.+| .+..+++|+.|++++|.++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc
Confidence 7665555 5555555555555555555
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=9.2e-31 Score=234.65 Aligned_cols=227 Identities=27% Similarity=0.429 Sum_probs=154.5
Q ss_pred ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcceeeeeeCCCCCceEEEEeCCCcceec---cC----------
Q 048688 4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGT---IP---------- 70 (244)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~---~~---------- 70 (244)
.....+.|+.||++||+++. ++. .+++ |..+.++|.|.||.|+ .++|+.|+++++.+.+. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 34456789999999999996 666 6777 9888899999999998 57999999999988765 33
Q ss_pred -------------ccCCCCCCCCEEeCCCCCCCCCCCc--cccCCCCCcEEEecCCccCCCCCccc-cCCCCCCEEEccC
Q 048688 71 -------------SQLGNLSSLQSLDLSFNRLSGSIPS--AIFTTYTLKDVSFRENQLTGVFPSFI-FNKSSLQHLDFSR 134 (244)
Q Consensus 71 -------------~~~~~l~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~ 134 (244)
..|..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 5677788888888888888777777 78888888888888888876666554 6778888888888
Q ss_pred CCCCCcCChhh--hCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 135 NTLSGEIPANI--CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 135 ~~~~~~l~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
|.+++..+... +..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+..|. +..+++|++|++++|.+++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 87764444331 25555666666666655433222 4455555555555555544443 5555555555555555554
Q ss_pred cCCccccCCCCCCEEEccCCccCccc
Q 048688 213 EIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
.+|..+..+++|++|++++|.+++.+
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred cccHHHhcCCCCCEEECCCCcccCcc
Confidence 45555555555555555555554433
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.1e-30 Score=229.53 Aligned_cols=226 Identities=22% Similarity=0.370 Sum_probs=179.2
Q ss_pred ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCC-----CC--cce------------eeeeeCCCCCceEEEEeCCCc
Q 048688 4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSA-----PV--CNW------------TGVTCDVHSHKVTALNISGLN 64 (244)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~~~~~~~~l~~L~l~~~~ 64 (244)
.+.+...|+.||++||+++. ++ . |..+. ++ |.| .||.|+. ..+|+.|+|+++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFG 334 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCC
Confidence 45566789999999999994 33 2 54332 44 999 9999986 5789999999999
Q ss_pred ceeccCccCCCCCCCCEEeC-CCCCCCCC---------------------------------------------------
Q 048688 65 LTGTIPSQLGNLSSLQSLDL-SFNRLSGS--------------------------------------------------- 92 (244)
Q Consensus 65 ~~~~~~~~~~~l~~L~~L~l-~~n~i~~~--------------------------------------------------- 92 (244)
+.|.+|+.++.+++|++|+| ++|.+.+.
T Consensus 335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 99999999999999999999 66643221
Q ss_pred -------------------------CCccccCCCCCcEEEecCCccCC-----------------CCCcccc--CCCCCC
Q 048688 93 -------------------------IPSAIFTTYTLKDVSFRENQLTG-----------------VFPSFIF--NKSSLQ 128 (244)
Q Consensus 93 -------------------------~~~~l~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~ 128 (244)
+|..+..+++|++|++++|.+++ .+|..+. .+++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 67788899999999999999987 3788877 899999
Q ss_pred EEEccCCCCCCcCChhhhCCCCCCcEEEccccc-ccc-cCCccccCCC-------CCcEEeeccCcccccCCc--cccCC
Q 048688 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHG-GIPSTLSNCT-------YLRILSLAYNDFSGAVPK--DIGNL 197 (244)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~n~~~~~~~~--~~~~~ 197 (244)
+|++++|.+.+.+|..+ ..+++|++|++++|. +++ .+|..++.++ +|+.|++++|.++ .+|. .+..+
T Consensus 495 ~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp EEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred EEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 99999999888888776 788899999999887 776 5666554443 7888888888877 6676 67777
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|.++
T Consensus 573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS
T ss_pred CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH
Confidence 88888888888777 666 6777777777777777777 455544
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-26 Score=183.59 Aligned_cols=184 Identities=23% Similarity=0.269 Sum_probs=150.3
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.+++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46788888888888666678888999999999998888555555678889999999999888766667788889999999
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 117 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 999887 6666666788899999999998885555568888899999999998886666677888899999999998886
Q ss_pred cCCccccCCCCCCEEEccCCccCcc
Q 048688 213 EIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
..+..+..+++|+.|++++|++.+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCHHHhccccCCCEEEecCCCeeCC
Confidence 5566688888999999999988764
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.8e-27 Score=211.27 Aligned_cols=190 Identities=35% Similarity=0.505 Sum_probs=147.7
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 45566677777776666677777777777777777777767777777777777777777777777777777777777777
Q ss_pred ccCCCCCCcCChhhhC----------------------------------------------------------------
Q 048688 132 FSRNTLSGEIPANICS---------------------------------------------------------------- 147 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~---------------------------------------------------------------- 147 (244)
+++|.+.+.+|..++.
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 7777776666654421
Q ss_pred -----CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC
Q 048688 148 -----SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLA 222 (244)
Q Consensus 148 -----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 222 (244)
.+++|++|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 235677888888888888888888888888888888888888888888888888999988888888888888888
Q ss_pred CCCEEEccCCccCcccCCC
Q 048688 223 ELEQMSLAENNLQALLLYS 241 (244)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~~ 241 (244)
.|++|++++|+++|.+|..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSEEECCSSEEEEECCSS
T ss_pred CCCEEECcCCcccccCCCc
Confidence 8899999999888888863
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.9e-27 Score=190.95 Aligned_cols=188 Identities=30% Similarity=0.452 Sum_probs=126.6
Q ss_pred CCCceEEEEeCC-CcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688 51 HSHKVTALNISG-LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129 (244)
Q Consensus 51 ~~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 129 (244)
.++++++|++++ +.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 356777888874 7777777777777888888888877777677777777777888888777777777777777777777
Q ss_pred EEccCCCCCCcCChhhhCCCC-CCcEEEcccccccccCCcccc-----------------------CCCCCcEEeeccCc
Q 048688 130 LDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLHGGIPSTLS-----------------------NCTYLRILSLAYND 185 (244)
Q Consensus 130 L~l~~~~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~-----------------------~~~~L~~L~l~~n~ 185 (244)
|++++|.+++.+|..+ ..++ +|++|++++|.+.+.+|..+. .+++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 7777777766666666 4454 666666666666555554444 44455555555555
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 4433332 44556666666666666666666666667777777777777666654
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=5.4e-26 Score=177.93 Aligned_cols=192 Identities=24% Similarity=0.316 Sum_probs=167.8
Q ss_pred CCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC
Q 048688 39 PVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP 118 (244)
Q Consensus 39 ~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 118 (244)
.|+.|.|..|.. ..+.++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 466788888853 4567899999988 5666554 689999999999997788889999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCC
Q 048688 119 SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198 (244)
Q Consensus 119 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 198 (244)
..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 88899999999999999998 77777768999999999999999866666788999999999999999877666788999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999977777899999999999999999875
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-25 Score=176.94 Aligned_cols=200 Identities=27% Similarity=0.360 Sum_probs=174.0
Q ss_pred CCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCC
Q 048688 38 APVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117 (244)
Q Consensus 38 ~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 117 (244)
.+.|.|.|..|.. ....+.++++++.++ .+|..+. .++++|++++|.+....+..+..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999998865 245678999999998 4666554 68999999999998666678999999999999999999666
Q ss_pred CccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCC
Q 048688 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197 (244)
Q Consensus 118 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 197 (244)
+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 666788999999999999998 7777777889999999999999997777788999999999999999986666678899
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++|++|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 999999999999997666778999999999999999998777655
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.3e-26 Score=181.14 Aligned_cols=183 Identities=23% Similarity=0.264 Sum_probs=85.4
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-CCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
++++.|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 344444444444444444444444444444444443 3323344444444455555544444444344444444555555
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++
T Consensus 136 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 5555444 333333344445555555555444333333444455555555555544444444444555555555555554
Q ss_pred ccCCccccCCCCCCEEEccCCccCc
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
+..+..+..+++|+.|++++|++.+
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCCHHHcccCcccCEEeccCCCccC
Confidence 3333334445555555555555443
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-25 Score=178.21 Aligned_cols=188 Identities=25% Similarity=0.276 Sum_probs=169.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCc-cCCCCCccccCCCCCCEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ-LTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L 130 (244)
.++++.|+++++.++...++.|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 5689999999999998788899999999999999999987778899999999999999997 776668889999999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
++++|.+. .++...+..+++|++|++++|.++...+..++.+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999998 55555558899999999999999866666789999999999999999876666788999999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
++..|..+..+++|+.|++++|.++++.+.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 988899999999999999999999987654
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.8e-26 Score=184.02 Aligned_cols=163 Identities=23% Similarity=0.310 Sum_probs=141.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcE
Q 048688 75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY 154 (244)
Q Consensus 75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~ 154 (244)
....+++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCE
Confidence 3578999999999998 88988999999999999999999 78888999999999999999998 898887 88999999
Q ss_pred EEcccccccccCCccccC---------CCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 048688 155 LYLSKNMLHGGIPSTLSN---------CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELE 225 (244)
Q Consensus 155 L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 225 (244)
|++++|.+.+.+|..+.. +++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 999998887788877654 889999999999887 67777888888888888888887 4666677888888
Q ss_pred EEEccCCccCcccCCCCC
Q 048688 226 QMSLAENNLQALLLYSFM 243 (244)
Q Consensus 226 ~L~l~~n~l~~~~~~~~~ 243 (244)
.|++++|.+.+.+|.+|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EEECTTCTTCCBCCCCTT
T ss_pred EEECcCCcchhhhHHHhc
Confidence 888888888877777653
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=8.1e-25 Score=175.95 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=136.6
Q ss_pred CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC------------------
Q 048688 39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG------------------ 91 (244)
Q Consensus 39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~------------------ 91 (244)
..|.|.++.|.. ..++++.|+++++.++...+..|..+++|++|++++|.+..
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 346677777743 23567888888888775445557777888888887777652
Q ss_pred -------CCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc
Q 048688 92 -------SIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 92 -------~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 163 (244)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccc
Confidence 122334445555555555555553333 34566677777777777665 333333366777777777777776
Q ss_pred c-cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 164 G-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 164 ~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
+ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4 466777777788888888887776667777777888888888888776555567777888888888888877776654
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=182.66 Aligned_cols=188 Identities=27% Similarity=0.298 Sum_probs=130.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35678888888888877778888888888888888888766667777888888888888887766555677777788888
Q ss_pred ccCCCCCCcCChhhhCCCC-------------------------CCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688 132 FSRNTLSGEIPANICSSLP-------------------------FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~-------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
+++|.+. .++...+..++ +|++|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 8777776 44443334444 4444555444444 233 245556666666666666
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 65556666777777777777777776666667777777777777777777666554
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-24 Score=182.28 Aligned_cols=188 Identities=24% Similarity=0.276 Sum_probs=138.3
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35789999999999888888899999999999999998877778888899999999999988866666677888888888
Q ss_pred ccCCCCCCcCChhhhCCCCC-------------------------CcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688 132 FSRNTLSGEIPANICSSLPF-------------------------LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~-------------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
+++|.+. .++...+..+++ |++|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence 8888876 555544344444 444444444444 222 244556666666666666
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 66666667777777777777777776666677777777777777777777666544
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.1e-24 Score=168.58 Aligned_cols=183 Identities=23% Similarity=0.284 Sum_probs=117.7
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|+++++.+.. + +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3456667777766552 2 245666777777777776653 2 3566667777777777776655555566677777777
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 7777766 555544466667777777777666444455666677777777777766555555566677777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
+..+..+..+++|+.|++++|++.+..|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 5555556667777777777766655443
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.5e-23 Score=170.37 Aligned_cols=204 Identities=22% Similarity=0.286 Sum_probs=144.0
Q ss_pred CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688 39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109 (244)
Q Consensus 39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 109 (244)
..|.+..+.|.. ..++++.|+++++.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 345666666642 23567888888888886666678888888888888888876667777777777777777
Q ss_pred CCccCCC---------------------CCccccCCCCCCEEEccCCCCCC-cCChhhhCCC------------------
Q 048688 110 ENQLTGV---------------------FPSFIFNKSSLQHLDFSRNTLSG-EIPANICSSL------------------ 149 (244)
Q Consensus 110 ~~~l~~~---------------------~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~~~------------------ 149 (244)
+|.++.. .+..+..+++|++|++++|.+.. .+....+..+
T Consensus 109 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 109 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred CCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 7765521 11123344555555555554431 0111111223
Q ss_pred ---CCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 048688 150 ---PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQ 226 (244)
Q Consensus 150 ---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 226 (244)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.
T Consensus 189 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence 45666666666666556677888889999999999988777777888899999999999998 78888889999999
Q ss_pred EEccCCccCcccCCCCC
Q 048688 227 MSLAENNLQALLLYSFM 243 (244)
Q Consensus 227 L~l~~n~l~~~~~~~~~ 243 (244)
|++++|+++++.+..|+
T Consensus 268 L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECCSSCCCCCCTTSSS
T ss_pred EECCCCcCCccChhhcC
Confidence 99999999988777764
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.4e-24 Score=169.16 Aligned_cols=180 Identities=27% Similarity=0.242 Sum_probs=156.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|++++|.+++..+..|..+++|++|++++|.+. .++.. ..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 467899999999999888889999999999999999997 33333 78899999999999998 6677788899999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++
T Consensus 107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 107 VSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9999998 777666688999999999999998666677889999999999999998666666788999999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCc
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
.+|..+..+.+|+.|++++|++.+
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -ccChhhcccccCCeEEeCCCCccC
Confidence 788888888899999999999876
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5e-25 Score=180.65 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=171.7
Q ss_pred CCCCCCCcceeeeeeCC-----------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 048688 34 WNTSAPVCNWTGVTCDV-----------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT 102 (244)
Q Consensus 34 w~~~~~~c~~~g~~~~~-----------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 102 (244)
|......|.|.++ |+. ..++++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5666778888876 431 2357999999999999777779999999999999999999777788999999
Q ss_pred CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCCh-hhhCCCCCCcEEEcccc-cccccCCccccCCCCCcEEe
Q 048688 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPA-NICSSLPFLDYLYLSKN-MLHGGIPSTLSNCTYLRILS 180 (244)
Q Consensus 103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 180 (244)
|++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 999999999999655555889999999999999998 7776 55588999999999998 46656677899999999999
Q ss_pred eccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688 181 LAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS 241 (244)
Q Consensus 181 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 241 (244)
+++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 9999998888889999999999999999997433333456899999999999999876543
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.2e-24 Score=179.28 Aligned_cols=182 Identities=18% Similarity=0.227 Sum_probs=137.3
Q ss_pred eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688 55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR 134 (244)
Q Consensus 55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 134 (244)
...++.++..++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345677777777 5666554 6899999999999977888999999999999999999988888899999999999999
Q ss_pred CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec-------------------------cCccccc
Q 048688 135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA-------------------------YNDFSGA 189 (244)
Q Consensus 135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-------------------------~n~~~~~ 189 (244)
|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|+++ +|.+++
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 9998 7887777899999999999999875444455555555555555 444442
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
+| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++++.|..|
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 22 24455566666666666665556666777777777777777777666554
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3e-24 Score=169.91 Aligned_cols=183 Identities=24% Similarity=0.211 Sum_probs=163.3
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
.+++++.|++++|.+.+ + +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 61 ~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 46789999999999885 3 478899999999999999997777778999999999999999997777778899999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 139 ~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 99999998 77776668899999999999999976667789999999999999999987777789999999999999988
Q ss_pred cccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 243 (244)
.+ .++.|+.|+++.|.+++.+|.+++
T Consensus 218 ~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 218 DC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 73 366799999999999999998765
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=7e-24 Score=164.66 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=160.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-CCCCCCccccCCCCCcEEEecC-CccCCCCCccccCCCCCCE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-LSGSIPSAIFTTYTLKDVSFRE-NQLTGVFPSFIFNKSSLQH 129 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~ 129 (244)
..+++.|+++++.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4579999999999998777799999999999999997 8755566899999999999998 9998777778899999999
Q ss_pred EEccCCCCCCcCChhhhCCCCCCc---EEEcccc-cccccCCccccCCCCCc-EEeeccCcccccCCccccCCCCCCEEE
Q 048688 130 LDFSRNTLSGEIPANICSSLPFLD---YLYLSKN-MLHGGIPSTLSNCTYLR-ILSLAYNDFSGAVPKDIGNLTKLMGLY 204 (244)
Q Consensus 130 L~l~~~~~~~~l~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~ 204 (244)
|++++|.+. .+|. +..+++|+ +|++++| .++...+..+..+++|+ .|++++|.++...+..+.. .+|+.|+
T Consensus 110 L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 999999998 6776 47788888 9999999 88866667799999999 9999999998444444444 8999999
Q ss_pred ccCCc-ccccCCccccCC-CCCCEEEccCCccCcccCCCC
Q 048688 205 LGRNR-LQGEIPREFGNL-AELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 205 l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~ 242 (244)
+++|+ +++..+..+..+ ++|+.|++++|+++++.+..|
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 99995 986667788899 999999999999998766544
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.9e-23 Score=168.78 Aligned_cols=200 Identities=22% Similarity=0.268 Sum_probs=144.3
Q ss_pred CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688 39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109 (244)
Q Consensus 39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 109 (244)
..|.+..+.|.. ..++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 346777777742 23578999999999987778889999999999999999886678888888889999888
Q ss_pred CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccc----------------------------
Q 048688 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM---------------------------- 161 (244)
Q Consensus 110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~---------------------------- 161 (244)
+|.+. .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 88876 3333322 45555555555554 4444333444445444444443
Q ss_pred ------------------ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688 162 ------------------LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223 (244)
Q Consensus 162 ------------------~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 223 (244)
+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 33333345666777888888888877666667788888888888888887 77777888888
Q ss_pred CCEEEccCCccCcccCCCCC
Q 048688 224 LEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 224 L~~L~l~~n~l~~~~~~~~~ 243 (244)
|+.|++++|+++++.+..|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSS
T ss_pred CCEEECCCCCCCccChhHcc
Confidence 89999999988887766654
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.7e-24 Score=168.60 Aligned_cols=185 Identities=22% Similarity=0.191 Sum_probs=103.7
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
+++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556666665554444455555566666666555554444455555556666665555554444455555555555555
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCcccc-----------------
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIG----------------- 195 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----------------- 195 (244)
+|.+. .++...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.+++..+..+.
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 55554 3333222455555555555555543 1345555555555555555554433222222
Q ss_pred ----------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccC
Q 048688 196 ----------NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 196 ----------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
...+|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 22367777777777775545556777788888888887776543
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=176.87 Aligned_cols=184 Identities=20% Similarity=0.227 Sum_probs=133.4
Q ss_pred eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688 55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR 134 (244)
Q Consensus 55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 134 (244)
...++..+..++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345677777777 5666554 6899999999999977778999999999999999999988888899999999999999
Q ss_pred CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCCC---------------
Q 048688 135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLT--------------- 198 (244)
Q Consensus 135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~--------------- 198 (244)
|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|. +....+..+..++
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9998 7887766899999999999999875555566666666666666532 3322223344444
Q ss_pred -------CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 199 -------KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 199 -------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
+|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 45555555555554445555555555555655555555555443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.3e-23 Score=177.72 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-CccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-PSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++|++++|.+++..+..|..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777777666777777777777777777665333 44566677777777777766655566666666666666
Q ss_pred ccCCCCCCcCChh-hhCCCCCCcEEEcccccccccCCcc-ccCCCCCcEEeeccCcccc
Q 048688 132 FSRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIPST-LSNCTYLRILSLAYNDFSG 188 (244)
Q Consensus 132 l~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~ 188 (244)
+++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 6666665333222 1255566666666666655444443 4555555555555555443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1e-23 Score=178.35 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=51.3
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCcEEEecCCccCCCCCcc-ccCCCCCC
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA--IFTTYTLKDVSFRENQLTGVFPSF-IFNKSSLQ 128 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~L~ 128 (244)
++++++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 456666666666666555666666666666666666665433332 555666666666666665544443 45556666
Q ss_pred EEEccCCCCC
Q 048688 129 HLDFSRNTLS 138 (244)
Q Consensus 129 ~L~l~~~~~~ 138 (244)
+|++++|.+.
T Consensus 158 ~L~L~~n~l~ 167 (455)
T 3v47_A 158 VLDLTFNKVK 167 (455)
T ss_dssp EEECTTCCBS
T ss_pred EEeCCCCccc
Confidence 6666555544
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=4.9e-24 Score=171.38 Aligned_cols=184 Identities=20% Similarity=0.256 Sum_probs=162.3
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
..+++.|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 567888899988887 466678899999999999999985444 578899999999999999988888889999999999
Q ss_pred EccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688 131 DFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR 209 (244)
Q Consensus 131 ~l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (244)
++++|.+.+ .+|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 156 ~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 999999974 255544 889999999999999997778899999999999999999987767778899999999999999
Q ss_pred ccccCCccccCCC-CCCEEEccCCccCcc
Q 048688 210 LQGEIPREFGNLA-ELEQMSLAENNLQAL 237 (244)
Q Consensus 210 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 237 (244)
+++..+..+..++ +|+.|++++|++++.
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9988888898884 899999999999874
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.9e-24 Score=184.53 Aligned_cols=132 Identities=21% Similarity=0.203 Sum_probs=62.3
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
+++.++++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34445555554443333334444555555555555443333444445555555555555444444444445555555555
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
+|.+. .+|..++..+++|++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 55444 44444434444455555555544444444444444444444444443
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=165.85 Aligned_cols=163 Identities=20% Similarity=0.183 Sum_probs=110.4
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
..++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 35667777777777766566667777777777777777765555666677777777777777665555456666777777
Q ss_pred EccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCcc---------------------------ccCCCCCcEEeec
Q 048688 131 DFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPST---------------------------LSNCTYLRILSLA 182 (244)
Q Consensus 131 ~l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------l~~~~~L~~L~l~ 182 (244)
++++|.+.+ .+|..+ ..+++|++|++++|.+++..+.. .....+|+.|+++
T Consensus 130 ~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208 (276)
T ss_dssp ECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred ECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence 777776652 134444 56666666666666654322221 1223378899999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccC
Q 048688 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214 (244)
Q Consensus 183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 214 (244)
+|.+++..+..+..+++|+.|++++|++....
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccC
Confidence 99988666666788999999999999998543
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.1e-23 Score=164.31 Aligned_cols=182 Identities=25% Similarity=0.204 Sum_probs=158.7
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 568899999999998 5665553 689999999999987778889999999999999999985433 26899999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .+|..+ ..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 84 Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999998 888766 78999999999999999666688999999999999999998777777889999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
...+..+..+++|+.|++++|+++.+.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 65556678899999999999999975443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=177.71 Aligned_cols=188 Identities=18% Similarity=0.197 Sum_probs=155.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45788999999999887788899999999999999999877788899999999999999998866666778899999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++.+|.+.
T Consensus 111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999987 454444488899999999999888777778888999999999999888665566788888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
+..+..+..+++|+.|++++|++.+.+|.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred EeChhhcccCcccceeeCCCCccccccCc
Confidence 66666777788888888877766555544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=173.81 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=60.5
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.+++.++++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34444555555444333333444444555555544444333334444444555555544444444444444444444444
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
++|.+. .+|..++..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 444444 44444334444444444444444433333444444444444444433
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.9e-24 Score=186.84 Aligned_cols=188 Identities=18% Similarity=0.271 Sum_probs=167.9
Q ss_pred CCCceEEEEeCCCcceec-----------------cCccCC--CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688 51 HSHKVTALNISGLNLTGT-----------------IPSQLG--NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 111 (244)
.+++++.|++++|.+++. +|+.+. .+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 478899999999999975 899999 9999999999999999899999999999999999999
Q ss_pred c-cCC-CCCccccCC------CCCCEEEccCCCCCCcCCh--hhhCCCCCCcEEEcccccccccCCccccCCCCCcEEee
Q 048688 112 Q-LTG-VFPSFIFNK------SSLQHLDFSRNTLSGEIPA--NICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSL 181 (244)
Q Consensus 112 ~-l~~-~~~~~~~~l------~~L~~L~l~~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (244)
. +++ .+|..+..+ ++|++|++++|.++ .+|. .+ ..+++|++|++++|.+.+.+| .++.+++|+.|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 8 887 778777765 99999999999998 8887 56 889999999999999998888 8889999999999
Q ss_pred ccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCC--CCCEEEccCCccCcccCCCCC
Q 048688 182 AYNDFSGAVPKDIGNLTK-LMGLYLGRNRLQGEIPREFGNLA--ELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 182 ~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~ 243 (244)
++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+++.+|.+|.
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 999988 77888888888 999999999998 7787777654 899999999999988887664
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.6e-23 Score=173.41 Aligned_cols=191 Identities=19% Similarity=0.202 Sum_probs=106.2
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc------------
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS------------ 119 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~------------ 119 (244)
+++++.|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 45566666666666555555566666666666665555533333445555555555555554444444
Q ss_pred ------------cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc----
Q 048688 120 ------------FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY---- 183 (244)
Q Consensus 120 ------------~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~---- 183 (244)
.+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 4444455555555555554 44444335555555555555555443344444444444444443
Q ss_pred --------------------CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688 184 --------------------NDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 184 --------------------n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 243 (244)
|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.|..|.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 333322223455666777777777777755566677777777777777777777666553
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.6e-22 Score=176.70 Aligned_cols=186 Identities=25% Similarity=0.250 Sum_probs=101.8
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
+++.|+++++.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5666666666666555556666666666666666665 566666666666666666666665555555566666666666
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccccccccC--CccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI--PSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 665554555443355555555555555554322 344455555555555555544444444444444555555444444
Q ss_pred ccCCc-cccCCCCCCEEEccCCccCcccCC
Q 048688 212 GEIPR-EFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 212 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
+..+. .+..+++|+.|++++|.+++..|.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 33222 244444444444444444444433
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=8.1e-23 Score=178.66 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=76.2
Q ss_pred cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688 96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175 (244)
Q Consensus 96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 175 (244)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 34444444444444444444444444445555555555555443333332345555555555555555444555555555
Q ss_pred CcEEeeccCccccc---CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 176 LRILSLAYNDFSGA---VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 176 L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
|+.|++++|.+.+. .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 56666655555431 12334555556666666665555555555566666666666666665555443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-22 Score=166.37 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45677777777777666666777777777777777777655566667777777777777777644334456677777777
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEccccccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 163 (244)
+++|.+. .++...+..+++|++|++++|.++
T Consensus 148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccC-ccChhhccCCCCCCEEECCCCcCC
Confidence 7777766 444443366666666666666554
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.4e-23 Score=167.93 Aligned_cols=182 Identities=22% Similarity=0.220 Sum_probs=124.9
Q ss_pred CCceEEEEeCCCcceeccCccC--CCCCCCCEEeCCCCCCCCCCCccccCC-----CCCcEEEecCCccCCCCCccccCC
Q 048688 52 SHKVTALNISGLNLTGTIPSQL--GNLSSLQSLDLSFNRLSGSIPSAIFTT-----YTLKDVSFRENQLTGVFPSFIFNK 124 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~l 124 (244)
..++++|++++|.+++.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5678888888888877777765 7788888888888888744 6666665 788888888888877666777778
Q ss_pred CCCCEEEccCCCCCCcC--Chhh-hCCCCCCcEEEcccccccc--cCC-ccccCCCCCcEEeeccCcccccCC-ccccCC
Q 048688 125 SSLQHLDFSRNTLSGEI--PANI-CSSLPFLDYLYLSKNMLHG--GIP-STLSNCTYLRILSLAYNDFSGAVP-KDIGNL 197 (244)
Q Consensus 125 ~~L~~L~l~~~~~~~~l--~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~ 197 (244)
++|++|++++|.+.+.+ +..+ +..+++|++|++++|.++. .++ ..+..+++|+.|++++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 88888888888765331 2222 2566777777777777762 111 233456777777777777765443 344556
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++|++|++++|.++ .+|..+. ++|+.|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 77777777777776 5665554 6677777777777765
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.6e-23 Score=179.71 Aligned_cols=184 Identities=17% Similarity=0.177 Sum_probs=154.0
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35799999999999988888999999999999999999977778899999999999999999977777789999999999
Q ss_pred ccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688 132 FSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR 209 (244)
Q Consensus 132 l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (244)
+++|.+.+ ..+..+ ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 105 Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99999873 234444 889999999999998433444 678999999999999999988888888888888888888887
Q ss_pred ccccCCcc-ccCCCCCCEEEccCCccCcc
Q 048688 210 LQGEIPRE-FGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 210 l~~~~~~~-l~~l~~L~~L~l~~n~l~~~ 237 (244)
+. .++.. +..+++|+.|++++|++++.
T Consensus 184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 184 SA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cc-ccchhhHhhcccccEEEccCCccccc
Confidence 76 33433 34577888888888888774
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=6.1e-23 Score=179.44 Aligned_cols=183 Identities=20% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCceEEEEeCCCcceec--cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCC
Q 048688 52 SHKVTALNISGLNLTGT--IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQ 128 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~ 128 (244)
.++++.|++++|.+++. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 45666666666666543 2555556666666666666655 344555566666666666666655444 3455566666
Q ss_pred EEEccCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccC
Q 048688 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR 207 (244)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 207 (244)
+|++++|.+.+..+..+ ..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..|..+..+++|++|++++
T Consensus 428 ~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 66666666653333333 556666666666666654 2455566666666666666666555555555666666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCccCc
Q 048688 208 NRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 208 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
|.+++..|..+..+++|+.|++++|+++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 66665555556666666666666666654
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=170.23 Aligned_cols=137 Identities=21% Similarity=0.216 Sum_probs=113.5
Q ss_pred CCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCC
Q 048688 50 VHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQ 128 (244)
Q Consensus 50 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~ 128 (244)
...++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 357889999999999998888899999999999999999985444458899999999999999985444 4788899999
Q ss_pred EEEccCCC-CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 129 HLDFSRNT-LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 129 ~L~l~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
+|++++|. +. .++...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 153 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 153 ILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred EEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 99999995 55 666555588999999999999998777888887777777776666553
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.5e-22 Score=155.57 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=146.7
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
..+++.|+++++.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 45799999999999988888999999999999999999977788899999999999999999977778889999999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 9999998 787777788999999999999999666668999999999999999999777778889999999999999997
Q ss_pred cc
Q 048688 212 GE 213 (244)
Q Consensus 212 ~~ 213 (244)
..
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=8.7e-23 Score=178.46 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=167.3
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 129 (244)
..++++.|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 46789999999999885 66899999999999999999986666 68889999999999999999888888999999999
Q ss_pred EEccCCCCCCc-CChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCC
Q 048688 130 LDFSRNTLSGE-IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208 (244)
Q Consensus 130 L~l~~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 208 (244)
|++++|.+.+. +|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus 453 L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVF-ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCcchHHhh-ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999999854 45444 88999999999999999888899999999999999999999888899999999999999999
Q ss_pred cccccCCccccCCC-CCCEEEccCCccCcccC
Q 048688 209 RLQGEIPREFGNLA-ELEQMSLAENNLQALLL 239 (244)
Q Consensus 209 ~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~ 239 (244)
+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 998 6777788887 59999999999987544
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.5e-22 Score=174.47 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=90.9
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46788999999998877778889999999999999988877777788889999999999988865555567888899999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~ 164 (244)
+++|.+. .+++..+..+++|++|++++|.+.+
T Consensus 154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC
Confidence 9888887 4544444778888888888887653
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-22 Score=153.93 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=71.5
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 4445555544444333333444445555555554444333333444455555555555444 333333344445555555
Q ss_pred ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. ..++.|+.|+++.|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 555444333333444445555555555444333333444445555555554433 1233444455555555554
Q ss_pred cCCCC
Q 048688 238 LLYSF 242 (244)
Q Consensus 238 ~~~~~ 242 (244)
+|.++
T Consensus 181 ip~~~ 185 (208)
T 2o6s_A 181 VRNSA 185 (208)
T ss_dssp BBCTT
T ss_pred eeccC
Confidence 44433
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.3e-22 Score=152.01 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=152.6
Q ss_pred CCCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEe
Q 048688 38 APVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF 108 (244)
Q Consensus 38 ~~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 108 (244)
...|.|.++.|.. ...+++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 3457788888853 2457999999999999777778899999999999999998665666789999999999
Q ss_pred cCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccc
Q 048688 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188 (244)
Q Consensus 109 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 188 (244)
++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 999999776677889999999999999998 7777666889999999999999986666678999999999999998753
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223 (244)
Q Consensus 189 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 223 (244)
.+++|+.|++..|.+++.+|..++.++.
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4567899999999999999988887764
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=182.31 Aligned_cols=199 Identities=19% Similarity=0.161 Sum_probs=171.4
Q ss_pred ceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-CccccCCCCCcEEEecCCccCCCCCcc
Q 048688 42 NWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-PSAIFTTYTLKDVSFRENQLTGVFPSF 120 (244)
Q Consensus 42 ~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~ 120 (244)
.+..+.+ .+++++.|++++|.+++..+..|..+++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4555554 4678999999999999888999999999999999999655455 788999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCCCCCcCChh-hhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCC-
Q 048688 121 IFNKSSLQHLDFSRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNL- 197 (244)
Q Consensus 121 ~~~l~~L~~L~l~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~- 197 (244)
+..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999998656554 34889999999999999986544 578999999999999999988888888776
Q ss_pred -CCCCEEEccCCcccccCCccccCCCC------CCEEEccCCccCcccCCCC
Q 048688 198 -TKLMGLYLGRNRLQGEIPREFGNLAE------LEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 198 -~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~ 242 (244)
++|+.|++++|.+.+..+..++.+++ |+.|++++|.+++..|..+
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 89999999999999877777766665 9999999998887766544
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=4.1e-23 Score=166.56 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=153.8
Q ss_pred CCCCceEEEEeCCCcceeccCccCCCC-----CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--CCccc-
Q 048688 50 VHSHKVTALNISGLNLTGTIPSQLGNL-----SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--FPSFI- 121 (244)
Q Consensus 50 ~~~~~l~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~- 121 (244)
...++++.|++++|.+++. |+.+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3478899999999999976 7777776 9999999999999977778999999999999999997653 23333
Q ss_pred -cCCCCCCEEEccCCCCCC--cCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCC
Q 048688 122 -FNKSSLQHLDFSRNTLSG--EIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNL 197 (244)
Q Consensus 122 -~~l~~L~~L~l~~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 197 (244)
..+++|++|++++|.+.+ .++..++..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 789999999999999972 3344555678999999999999987664 45667899999999999998 6777665
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999954 65 89999999999999999864
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=174.59 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=152.4
Q ss_pred CCCceEEEEeCCCcceecc--CccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCC
Q 048688 51 HSHKVTALNISGLNLTGTI--PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSL 127 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L 127 (244)
..++++.|++++|.+.+.. +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 3567788888888776443 566778888888888888887 444458888889999999888876555 457788999
Q ss_pred CEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEcc
Q 048688 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLG 206 (244)
Q Consensus 128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 206 (244)
++|++++|.+.+..+. .+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 424 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 9999999988744444 4478889999999999886 4678888899999999999999887778888889999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 207 RNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 207 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
+|.+++..+..+..+++|+.|++++|++++..|.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999877777788899999999999999887664
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=9.7e-22 Score=174.02 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=110.1
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccC------------------
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLT------------------ 114 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~------------------ 114 (244)
.++.|++++|.+.+..+..|..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555555555555555555555555555555543332 34444444555554444433
Q ss_pred --------CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC--------ccccCCCCCcE
Q 048688 115 --------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP--------STLSNCTYLRI 178 (244)
Q Consensus 115 --------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~L~~ 178 (244)
+..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+ ..+..+++|+.
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 234555666667777777777766 5555544666777777777776653211 12566667777
Q ss_pred EeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++++.|.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 77777776644344566677777777777777644445566677777777777777666543
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=162.30 Aligned_cols=181 Identities=21% Similarity=0.219 Sum_probs=135.5
Q ss_pred CceEEEEeCCCcceeccCccC--CCCCCCCEEeCCCCCCCCCCC----ccccCCCCCcEEEecCCccCCCCCccccCCCC
Q 048688 53 HKVTALNISGLNLTGTIPSQL--GNLSSLQSLDLSFNRLSGSIP----SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSS 126 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 126 (244)
.+++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 348899999999888888887 888999999999998875444 34456889999999999998777788888999
Q ss_pred CCEEEccCCCCCCc--CCh-hhhCCCCCCcEEEcccccccccCCc----cccCCCCCcEEeeccCcccccCCccccCC--
Q 048688 127 LQHLDFSRNTLSGE--IPA-NICSSLPFLDYLYLSKNMLHGGIPS----TLSNCTYLRILSLAYNDFSGAVPKDIGNL-- 197 (244)
Q Consensus 127 L~~L~l~~~~~~~~--l~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-- 197 (244)
|++|++++|.+.+. ++. ..+..+++|++|++++|.++ .++. .++.+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999987532 221 11246778888888888775 2232 24567788888888888876656666555
Q ss_pred -CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 198 -TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 198 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++|++|++++|.++ .+|..+. ++|+.|++++|+++++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 57888888888887 5666553 6788888888888774
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=168.46 Aligned_cols=161 Identities=27% Similarity=0.343 Sum_probs=133.6
Q ss_pred CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCC--CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688 74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG--VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151 (244)
Q Consensus 74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 151 (244)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 577889999999999887788888889999999999998885 445667888999999999999885588776677889
Q ss_pred CcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEcc
Q 048688 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA 230 (244)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~ 230 (244)
|++|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 99999999988766666554 68999999999988 67777778999999999999998 55554 8889999999999
Q ss_pred CCccCccc
Q 048688 231 ENNLQALL 238 (244)
Q Consensus 231 ~n~l~~~~ 238 (244)
+|++++..
T Consensus 477 ~N~~~c~c 484 (520)
T 2z7x_B 477 TNPWDCSC 484 (520)
T ss_dssp SSCBCCCH
T ss_pred CCCCcccC
Confidence 99988753
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.1e-21 Score=170.78 Aligned_cols=191 Identities=22% Similarity=0.160 Sum_probs=134.1
Q ss_pred CCCceEEEEeCCCcce--eccCccCCCC--CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCC
Q 048688 51 HSHKVTALNISGLNLT--GTIPSQLGNL--SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKS 125 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~--~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~ 125 (244)
.+++++.|++++|.+. ......|..+ ..|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 430 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence 4678999999998754 2233344433 589999999999998888899999999999999999976554 5778888
Q ss_pred CCCEEEccCCCCCCcCChhhh--------------------------CCCCCCcEEEcccccccccCCccccCCCCCcEE
Q 048688 126 SLQHLDFSRNTLSGEIPANIC--------------------------SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL 179 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~--------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 179 (244)
+|++|++++|.+. .++...+ ..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 431 ~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 431 NIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 8888888888765 3222222 455666666666666664444556666667777
Q ss_pred eeccCcccccCC--------ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 180 SLAYNDFSGAVP--------KDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 180 ~l~~n~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
++++|.+++..+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++++.+..|
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 777766653211 125566777777777777763333457777888888888888887666544
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.6e-22 Score=180.63 Aligned_cols=184 Identities=19% Similarity=0.264 Sum_probs=163.1
Q ss_pred CCCceEEEEeCCCccee-----------------ccCccCC--CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688 51 HSHKVTALNISGLNLTG-----------------TIPSQLG--NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 111 (244)
.+++++.|++++|.+++ .+|+.+. .+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 46889999999999997 3888888 9999999999999998899999999999999999999
Q ss_pred c-cCC-CCCccccC-------CCCCCEEEccCCCCCCcCCh--hhhCCCCCCcEEEcccccccccCCccccCCCCCcEEe
Q 048688 112 Q-LTG-VFPSFIFN-------KSSLQHLDFSRNTLSGEIPA--NICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS 180 (244)
Q Consensus 112 ~-l~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (244)
. +++ .+|..+.. +++|++|++++|.+. .+|. .+ ..+++|++|++++|.+. .+| .++.+++|+.|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 8 887 67765544 459999999999998 8988 56 89999999999999998 788 899999999999
Q ss_pred eccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCCC--CCEEEccCCccCcccCC
Q 048688 181 LAYNDFSGAVPKDIGNLTK-LMGLYLGRNRLQGEIPREFGNLAE--LEQMSLAENNLQALLLY 240 (244)
Q Consensus 181 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~ 240 (244)
+++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++.+.+|.
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 9999998 78888888998 999999999998 78887776654 99999999999887664
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.1e-21 Score=168.42 Aligned_cols=161 Identities=27% Similarity=0.363 Sum_probs=134.6
Q ss_pred CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--CCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688 74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151 (244)
Q Consensus 74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 151 (244)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6778899999999999877888889999999999999998853 24567889999999999999985588777688899
Q ss_pred CcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEcc
Q 048688 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA 230 (244)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~ 230 (244)
|++|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999998766665544 68999999999988 56766668999999999999998 56655 8889999999999
Q ss_pred CCccCccc
Q 048688 231 ENNLQALL 238 (244)
Q Consensus 231 ~n~l~~~~ 238 (244)
+|++.+..
T Consensus 506 ~N~~~c~c 513 (562)
T 3a79_B 506 DNPWDCTC 513 (562)
T ss_dssp SCCBCCCH
T ss_pred CCCcCCCc
Confidence 99988743
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=170.96 Aligned_cols=188 Identities=25% Similarity=0.282 Sum_probs=154.6
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC--CccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI--PSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
++++.|+++++.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEE
Confidence 4455555555544433332 56788999999998887433 66778899999999999998854444 8899999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc-ccCCccccCCCCCCEEEccCCc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS-GAVPKDIGNLTKLMGLYLGRNR 209 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 209 (244)
++++|.+.+..+...+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999875555455588999999999999998888889999999999999999987 4678889999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688 210 LQGEIPREFGNLAELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 243 (244)
+++..|..+..+++|+.|++++|+++++.|..|.
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 9987798999999999999999999998877653
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4.5e-21 Score=173.58 Aligned_cols=192 Identities=20% Similarity=0.228 Sum_probs=118.5
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCcEEEecCCccCCCCC-ccccCCCCC
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA--IFTTYTLKDVSFRENQLTGVFP-SFIFNKSSL 127 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L 127 (244)
.+++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 4567778888888777777777888888888888888777545544 7777788888888777765543 456777777
Q ss_pred CEEEccCCCCCCcCChhhh-------------------------CC----------------------------------
Q 048688 128 QHLDFSRNTLSGEIPANIC-------------------------SS---------------------------------- 148 (244)
Q Consensus 128 ~~L~l~~~~~~~~l~~~~~-------------------------~~---------------------------------- 148 (244)
++|++++|.+.+..+..+. ..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 7777777766532222110 00
Q ss_pred ----------------------------------CCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688 149 ----------------------------------LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI 194 (244)
Q Consensus 149 ----------------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 194 (244)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 0233444444444433334445555666666666666655555556
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
..+++|++|++++|.+++..+..+..+++|+.|++++|.++++.+..|
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence 666666666666666655555566666666666666666665555443
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.6e-21 Score=155.71 Aligned_cols=172 Identities=23% Similarity=0.345 Sum_probs=141.3
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
.+++++.|++++|.+.+.. . +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|
T Consensus 61 ~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L 134 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVL 134 (308)
T ss_dssp GCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEE
Confidence 4678999999999888543 3 8899999999999999873 33 688899999999999998854 33 7889999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
++++|.+. .++. + ..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 135 ~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 135 YLDLNQIT-NISP-L-AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-cCcc-c-cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence 99999987 5554 4 778999999999998874 444 8889999999999999875433 77889999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCccCcc
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++.. .+..+++|+.|++++|++++.
T Consensus 208 ~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 208 SDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred Cccc--cccCCCCCCEEEccCCeeecC
Confidence 8543 378899999999999998773
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=8.5e-21 Score=154.22 Aligned_cols=187 Identities=22% Similarity=0.224 Sum_probs=138.7
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
..++++.|++++|.+++..|..|..+++|++|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 5678899999999888777888888899999988888876 4554433 455555555555554433344444445544
Q ss_pred EccCCC----------------------------------------------CCCcCChhhhCCCCCCcEEEcccccccc
Q 048688 131 DFSRNT----------------------------------------------LSGEIPANICSSLPFLDYLYLSKNMLHG 164 (244)
Q Consensus 131 ~l~~~~----------------------------------------------~~~~l~~~~~~~~~~L~~L~l~~~~~~~ 164 (244)
++++|. +. .++...+..+++|++|++++|.+.+
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCc
Confidence 444443 33 2232333678899999999999997
Q ss_pred cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccC------CCCCCEEEccCCccC--c
Q 048688 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGN------LAELEQMSLAENNLQ--A 236 (244)
Q Consensus 165 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~ 236 (244)
..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. ...|+.|++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 77778999999999999999998 77888999999999999999999665665554 367899999999998 4
Q ss_pred ccCCCC
Q 048688 237 LLLYSF 242 (244)
Q Consensus 237 ~~~~~~ 242 (244)
+.|..|
T Consensus 311 ~~~~~~ 316 (332)
T 2ft3_A 311 VQPATF 316 (332)
T ss_dssp SCGGGG
T ss_pred cCcccc
Confidence 555443
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.5e-21 Score=154.72 Aligned_cols=177 Identities=23% Similarity=0.252 Sum_probs=125.8
Q ss_pred eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC--CCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG--SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
++.|++++|.+.+..+..|..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+ .++|++|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l 199 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHL 199 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEEC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEEC
Confidence 3333444443333333345555666666666655532 344555666666666666666653 33332 267788888
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 200 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 888877 443344488999999999999998777778999999999999999998 778888999999999999999986
Q ss_pred cCCccccC------CCCCCEEEccCCccCc
Q 048688 213 EIPREFGN------LAELEQMSLAENNLQA 236 (244)
Q Consensus 213 ~~~~~l~~------l~~L~~L~l~~n~l~~ 236 (244)
..+..+.. ...++.|++++|++..
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cChhhcCCcccccccccccceEeecCcccc
Confidence 55555543 3778999999999875
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8e-22 Score=168.11 Aligned_cols=184 Identities=21% Similarity=0.225 Sum_probs=125.1
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc------------
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS------------ 119 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~------------ 119 (244)
.++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 3467777777777776666677777777777777777764333 66677777777776665532110
Q ss_pred ----cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc-CCCCCcEEeeccCcccccCCccc
Q 048688 120 ----FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS-NCTYLRILSLAYNDFSGAVPKDI 194 (244)
Q Consensus 120 ----~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~ 194 (244)
....+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. + ..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~ 187 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQ 187 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cc
Confidence 01234667777777777763333333 6677888888888888766666664 677888888888887754 2 23
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++++ |..+
T Consensus 188 ~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l 233 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI-EKAL 233 (487)
T ss_dssp CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEE-CTTC
T ss_pred ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCccc-chhh
Confidence 357888888888888884 444577888888888888888874 4433
No 64
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.3e-20 Score=145.29 Aligned_cols=161 Identities=24% Similarity=0.297 Sum_probs=90.1
Q ss_pred CCCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCcc
Q 048688 34 WNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113 (244)
Q Consensus 34 w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l 113 (244)
|..+...|.|.++.|.. +.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 66777899999988853 2222 2333222 4555566655555544455555555555666555555
Q ss_pred CCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcc
Q 048688 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKD 193 (244)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 193 (244)
....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 5443344455555666666555555 444444455555555555555555 45555555555555555555555444444
Q ss_pred ccCCCCCCEEEccCCccc
Q 048688 194 IGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 194 ~~~~~~L~~L~l~~n~l~ 211 (244)
+..+++|+.|++.+|++.
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 555555555555555554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.9e-22 Score=162.95 Aligned_cols=179 Identities=22% Similarity=0.197 Sum_probs=115.1
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc----------------cccCCCCCcEEEecCCccC
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS----------------AIFTTYTLKDVSFRENQLT 114 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~l~~l~~L~~L~l~~~~l~ 114 (244)
..++++.|++++|.+.+..+ +..+++|++|++++|.+.+..+. ....+++|++|++++|.++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 35677788888887765443 77777788877777766521100 0112345555666666665
Q ss_pred CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI 194 (244)
Q Consensus 115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 194 (244)
+..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.++.. +. ...+++|+.|++++|.+++ +|..+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEF 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhh
Confidence 554555666677777777777776333344434567777777777777633 22 2246777777777777764 34446
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688 195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 77777888888888777 56666777778888888888776
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.5e-20 Score=151.25 Aligned_cols=173 Identities=23% Similarity=0.361 Sum_probs=148.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. + .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 5689999999999884 44 6889999999999999998 4444 89999999999999999854 3 588999999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .++. + ..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.++
T Consensus 114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence 9999998 5654 4 8899999999999999843 33 88999999999999999854 43 889999999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCcccC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
+ ++. +..+++|+.|++++|++++..+
T Consensus 187 ~-~~~-l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 187 D-ISP-LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp C-CGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred c-Chh-hcCCCCCCEEEccCCccCcccc
Confidence 5 443 8899999999999999998764
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=164.03 Aligned_cols=84 Identities=27% Similarity=0.201 Sum_probs=56.3
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCC-CCCccccCCCCCCE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG-VFPSFIFNKSSLQH 129 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~ 129 (244)
.++++++|++++|.+++..|..|..+++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..|..+..+++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 3566777777777777666777777777777777777776 44444 56677777777777665 34566666666666
Q ss_pred EEccCCCC
Q 048688 130 LDFSRNTL 137 (244)
Q Consensus 130 L~l~~~~~ 137 (244)
|++++|.+
T Consensus 120 L~L~~n~l 127 (520)
T 2z7x_B 120 LGLSTTHL 127 (520)
T ss_dssp EEEEESSC
T ss_pred EEecCccc
Confidence 66666654
No 68
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2.6e-20 Score=143.58 Aligned_cols=155 Identities=25% Similarity=0.305 Sum_probs=138.0
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688 79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158 (244)
Q Consensus 79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~ 158 (244)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 567888888887 777655 389999999999999888888999999999999999997 8887777899999999999
Q ss_pred cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
+|.++...+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999666677899999999999999998 67888899999999999999999666677899999999999999998754
No 69
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=3.8e-21 Score=158.07 Aligned_cols=176 Identities=26% Similarity=0.241 Sum_probs=144.4
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
.++++++.++ .+|..+. ..+++|++++|.+.+..+..+. .+++|++|++++|.++...+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5777888887 4665543 4689999999999866666676 8999999999999999777778899999999999999
Q ss_pred CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc---cCCCCCCEEEccCCcccc
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI---GNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~ 212 (244)
.+. .++...+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++.
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 998 7777766889999999999999987778889999999999999999985444444 568899999999999985
Q ss_pred cCCccccCCCC--CCEEEccCCccCc
Q 048688 213 EIPREFGNLAE--LEQMSLAENNLQA 236 (244)
Q Consensus 213 ~~~~~l~~l~~--L~~L~l~~n~l~~ 236 (244)
..+..+..++. ++.|++++|++.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 54556777776 4889999998865
No 70
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.8e-20 Score=143.60 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=131.9
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT 136 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 136 (244)
.++++++.++ .+|..+. +.|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4666777777 4666554 689999999999986666688999999999999999998888899999999999999999
Q ss_pred CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98 8888877889999999999999987778889999999999999999987777778889999999999998863
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.1e-21 Score=147.64 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=150.1
Q ss_pred CCCceEEEEeCCCc-ceeccCccCCCCCCCCEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCC
Q 048688 51 HSHKVTALNISGLN-LTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128 (244)
Q Consensus 51 ~~~~l~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 128 (244)
..++++.|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 47889999999997 8877777899999999999998 99986666788999999999999999985 565 78888898
Q ss_pred ---EEEccCC-CCCCcCChhhhCCCCCCc-EEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCC-CCCC
Q 048688 129 ---HLDFSRN-TLSGEIPANICSSLPFLD-YLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNL-TKLM 201 (244)
Q Consensus 129 ---~L~l~~~-~~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~ 201 (244)
+|++++| .+. .++...+..+++|+ +|++++|.++ .+|......++|+.|++++|. ++...+..+..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 9999999 887 78877668999999 9999999998 555443333899999999995 886667788888 9999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCc
Q 048688 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 202 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 233 (244)
.|++++|.++ .+|.. .+++|+.|++.++.
T Consensus 209 ~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 9999999998 55543 67889999998763
No 72
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=143.41 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=125.7
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
.++++++.++ .+|..+. ..+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 6788888887 4666553 457899999999985534 45788999999999999998777778888999999999999
Q ss_pred CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 997 6666666888999999999999987778888888999999999999887778888888899999999988864
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=156.99 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=149.1
Q ss_pred CCCceEEEEeCCCcceeccC----ccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--C--Ccccc
Q 048688 51 HSHKVTALNISGLNLTGTIP----SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--F--PSFIF 122 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~--~~~~~ 122 (244)
...+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 46789999999999886444 3455789999999999999877778999999999999999987642 1 22346
Q ss_pred CCCCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEcccccccccCCccccCC---CCCcEEeeccCcccccCCccccC
Q 048688 123 NKSSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHGGIPSTLSNC---TYLRILSLAYNDFSGAVPKDIGN 196 (244)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~ 196 (244)
.+++|++|++++|.++ .++.. ++..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 7899999999999997 55443 44678999999999999997778777766 69999999999998 5676654
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 197 LTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 197 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
++|+.|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 272 -~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred -CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 799999999999984 343 6788999999999999875
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2.3e-20 Score=143.02 Aligned_cols=148 Identities=23% Similarity=0.259 Sum_probs=121.3
Q ss_pred CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688 39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109 (244)
Q Consensus 39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 109 (244)
-.|.+..+.|.. ...+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 445666666642 23578899999999987777788999999999999999987778889999999999999
Q ss_pred CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
+|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99998666666788999999999999998 555555588899999999999998666667888899999999999875
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2.1e-20 Score=149.24 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=146.1
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+.+++.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ .+ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 5678999999999874 33 488899999999999999844 43 8899999999999999985 33 488999999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .+ ..+ ..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 119 L~~n~i~-~~-~~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGIS-DI-NGL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCC-CC-GGG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-CC-hhh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 9999998 55 344 7899999999999999843 578899999999999999985544 888999999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCcc
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+ ++ .+..+++|+.|++++|+++..
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccCC
Confidence 4 44 488999999999999998764
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.9e-20 Score=162.35 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=85.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 367888999999888777788888999999999999888667788888889999999988887 45544 788888888
Q ss_pred ccCCCCCCcCC--hhhhCCCCCCcEEEccccccc
Q 048688 132 FSRNTLSGEIP--ANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 132 l~~~~~~~~l~--~~~~~~~~~L~~L~l~~~~~~ 163 (244)
+++|.+. .++ ..+ ..+++|++|++++|.+.
T Consensus 128 Ls~N~l~-~l~~p~~~-~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSFNDFD-VLPVCKEF-GNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSSCCS-BCCCCGGG-GGCTTCCEEEEECSBCC
T ss_pred CCCCCcc-ccCchHhh-cccCcccEEecCCCccc
Confidence 8888887 443 444 77888888888877764
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.7e-20 Score=163.03 Aligned_cols=180 Identities=22% Similarity=0.163 Sum_probs=112.3
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
..++.|+|++|.+++..+..|..+++|++|++++|.+.+..+.+|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 35677777777776655666777777777777777776445556667777777777777766555555666777777777
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCccccCCCC----CCEEEccC
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK----LMGLYLGR 207 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~----L~~L~l~~ 207 (244)
++|.++ .++...+..+++|++|++++|.++. ..|..++.+++|++|++++|.+++..+..+..+.+ ...++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 777766 5555544666777777777776653 34556666677777777777766555555443332 23566666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcc
Q 048688 208 NRLQGEIPREFGNLAELEQMSLAENNL 234 (244)
Q Consensus 208 n~l~~~~~~~l~~l~~L~~L~l~~n~l 234 (244)
|.+....+ .......+..+++.+|..
T Consensus 211 n~l~~i~~-~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 211 NPMNFIQP-GAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCCCEECT-TTTTTCEEEEEEEESCCS
T ss_pred CcccccCc-ccccchhhhhhhhhcccc
Confidence 66653323 333334456666666643
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.8e-20 Score=153.07 Aligned_cols=176 Identities=24% Similarity=0.427 Sum_probs=121.0
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
..++++.|+++++.+....+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence 45678888888887764332 677788888888888776 3332 6677777777777777764433 5667777777
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
++++|.+. .++. + ..+++|++|++++|.++. + ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+
T Consensus 227 ~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 227 KIGNNKIT-DLSP-L-ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EccCCccC-CCcc-h-hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcC
Confidence 77777776 4444 3 667777777777777663 2 3466677777777777776643 3466677777777777777
Q ss_pred cccCCccccCCCCCCEEEccCCccCcccC
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
++..+..+..+++|+.|++++|++++..|
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCcChhHhhccccCCEEEccCCccccccC
Confidence 76666667777777777777777777655
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=6.5e-21 Score=162.50 Aligned_cols=179 Identities=22% Similarity=0.193 Sum_probs=140.5
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc----------------cccCCCCCcEEEecCCccC
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS----------------AIFTTYTLKDVSFRENQLT 114 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~l~~l~~L~~L~l~~~~l~ 114 (244)
.+++++.|++++|.+++..+ |..+++|++|++++|.+.+..+. ....+++|+.|++++|.++
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC
T ss_pred CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCC
Confidence 35567777777776665443 66666666666666655421100 1123578999999999999
Q ss_pred CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI 194 (244)
Q Consensus 115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 194 (244)
+..|..+..+++|++|++++|.+++..|..+...+++|++|++++|.+++. +. +..+++|+.|++++|.+++. |..+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~ 210 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEF 210 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhH
Confidence 888888889999999999999998666766645789999999999999854 32 34689999999999999864 4458
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688 195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 211 ~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 89999999999999999 57888999999999999999998
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=4.4e-20 Score=150.75 Aligned_cols=171 Identities=24% Similarity=0.385 Sum_probs=108.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.++++.|++++|.+.+. +. +..+++|+++++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|+
T Consensus 176 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 45677777777766632 22 6666777777777776653322 6666777777777777664322 66677777777
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.+. .+ ..+ ..+++|++|++++|.++. + ..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 250 l~~n~l~-~~-~~~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 250 IGTNQIS-DI-NAV-KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCSSCCC-CC-GGG-TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCCCccC-CC-hhH-hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 7777765 44 223 566777777777776663 2 34566677777777777766566666666777777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCccC
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
+..| +..+++|+.|++++|+++
T Consensus 325 ~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGGCTTCSEESSSCC---
T ss_pred cccC--hhhhhccceeehhhhccc
Confidence 4433 666777777777777664
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.1e-20 Score=163.71 Aligned_cols=180 Identities=23% Similarity=0.223 Sum_probs=151.9
Q ss_pred EeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCC
Q 048688 59 NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS 138 (244)
Q Consensus 59 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (244)
+-++.+++ .+|..+. ..+++|+|++|.|+...+.+|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 34445555 5665542 47999999999999666778999999999999999999887888999999999999999998
Q ss_pred CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc-CCccccCCCCCCEEEccCCcccccCCcc
Q 048688 139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA-VPKDIGNLTKLMGLYLGRNRLQGEIPRE 217 (244)
Q Consensus 139 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 217 (244)
.++...|..+++|++|++++|.++...+..|+++++|++|++++|.++.. .|..+..+++|++|++++|.+++..+..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 88888889999999999999999866666799999999999999998753 5777888999999999999999776766
Q ss_pred ccCCCC----CCEEEccCCccCcccCCCC
Q 048688 218 FGNLAE----LEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 218 l~~l~~----L~~L~l~~n~l~~~~~~~~ 242 (244)
+..+.+ ...++++.|++..+.+..+
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccc
Confidence 654433 4578999999998776654
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.8e-20 Score=159.87 Aligned_cols=183 Identities=26% Similarity=0.393 Sum_probs=157.3
Q ss_pred CcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc
Q 048688 40 VCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS 119 (244)
Q Consensus 40 ~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 119 (244)
.|.|.++ | +.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4777776 5 34566666 5666554 7999999999999977788999999999999999999988888
Q ss_pred cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCc-ccccCCccccCC
Q 048688 120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNL 197 (244)
Q Consensus 120 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~ 197 (244)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.+++ ..|..++.+++|++|++++|. +....+..+..+
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 8999999999999999998 6666655899999999999999985 356789999999999999998 443444678899
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++|++|++++|.+++..|..+..+++|+.|++++|.+..+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 9999999999999988899999999999999999987543
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=138.33 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=78.1
Q ss_pred ceEEEEeCCCcceeccC-ccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 54 KVTALNISGLNLTGTIP-SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
.++.|++++|.+++..+ ..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45566666666654432 34556666666666666665444445666666666666666666555555566666666666
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
++|.+. .+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 113 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666665 333333355666666666666666544556666666666666666654
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=5.8e-20 Score=138.41 Aligned_cols=154 Identities=17% Similarity=0.244 Sum_probs=110.1
Q ss_pred CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688 74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD 153 (244)
Q Consensus 74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~ 153 (244)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+ ..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 45567777777777776 445 5677777888888777654 22356677888888888887764455555 6777888
Q ss_pred EEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688 154 YLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
+|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888888776666777788888888888887 55 444 57778888888888888874 44 6778888888888888
Q ss_pred ccCc
Q 048688 233 NLQA 236 (244)
Q Consensus 233 ~l~~ 236 (244)
++..
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8764
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.8e-19 Score=152.92 Aligned_cols=106 Identities=29% Similarity=0.398 Sum_probs=49.7
Q ss_pred cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCC
Q 048688 122 FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201 (244)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 201 (244)
..+++|++|++++|.+. .++. + ..+++|++|++++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 284 AGLTALTNLELNENQLE-DISP-I-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp TTCTTCSEEECCSSCCS-CCGG-G-GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred cCCCccCeEEcCCCccc-Cchh-h-cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 33444444444444443 2222 1 334444444444444443222 34444555555555544422 2344555555
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 202 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
.|++++|.+++..| +..+++|+.|++++|++++
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 55555555554333 4555555555555555555
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=157.37 Aligned_cols=171 Identities=25% Similarity=0.376 Sum_probs=143.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+.+++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 5678889999998874 44 58889999999999999984443 8899999999999999885 33 678899999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
|++|.+. .++ .+ ..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 116 Ls~N~l~-~l~-~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCC-CCc-cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 9999997 553 44 7889999999999999843 578889999999999999986544 888999999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCccCcc
Q 048688 212 GEIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
+ ++ .+..+++|+.|+|++|++...
T Consensus 189 ~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 D-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp B-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred C-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 4 43 588899999999999998775
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1e-19 Score=148.91 Aligned_cols=200 Identities=17% Similarity=0.128 Sum_probs=152.3
Q ss_pred cceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcE-EEec
Q 048688 41 CNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKD-VSFR 109 (244)
Q Consensus 41 c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~l~ 109 (244)
|.+..+.|.. -+.+++.|++++|.++.+.+.+|.++++|++|++++|.+.+.++ .+|..++++++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5566677742 23578999999999997667789999999999999999865555 46788888776 5666
Q ss_pred CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc-ccccccCCccccCCC-CCcEEeeccCccc
Q 048688 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK-NMLHGGIPSTLSNCT-YLRILSLAYNDFS 187 (244)
Q Consensus 110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~n~~~ 187 (244)
+|.+....|..|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78898777888999999999999999998 66665545666788888866 456544445566654 6888999999988
Q ss_pred ccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 188 GAVPKDIGNLTKLMGLYLGR-NRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
.. +.......+|+++++.+ |.++...++.|..+++|+.|++++|+|+.+.+..|
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 54 44444556788999875 66664444567889999999999999998766554
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.5e-19 Score=152.03 Aligned_cols=174 Identities=27% Similarity=0.429 Sum_probs=150.5
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
.+++++.|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 46789999999999886544 7789999999999999973 3 468899999999999999986544 7889999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
++++|.+. .++. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+
T Consensus 271 ~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 271 KLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 99999998 5555 4 789999999999999985433 7889999999999999986554 77899999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCccCcccC
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
++. ..+..+++|+.|++++|++++..|
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch
Confidence 854 468899999999999999999877
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=4.4e-20 Score=145.27 Aligned_cols=151 Identities=23% Similarity=0.308 Sum_probs=75.5
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688 73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152 (244)
Q Consensus 73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L 152 (244)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++... . ++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L 108 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIP--S-ACL 108 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCC--C-SSC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCccc--c-Ccc
Confidence 444555555555555554 333 44555555555555555553322 445555555555555554 343321 1 455
Q ss_pred cEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
++|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 555555555542 22 345555555555555555432 2 344555555555555555532 34455555555555555
Q ss_pred ccCcc
Q 048688 233 NLQAL 237 (244)
Q Consensus 233 ~l~~~ 237 (244)
++++.
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 55443
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.5e-18 Score=145.44 Aligned_cols=171 Identities=23% Similarity=0.230 Sum_probs=105.0
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++.|++++|.+++. + +..+++|++|++++|.+.+ ++ +..+++|++|++++|.+++. + +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEE
Confidence 45666777777766642 2 5666666666666666653 22 55666666666666666542 2 55566666666
Q ss_pred ccCCCCCCcCChh-------------------hhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCc
Q 048688 132 FSRNTLSGEIPAN-------------------ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK 192 (244)
Q Consensus 132 l~~~~~~~~l~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 192 (244)
+++|.++ .++-. -+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++.
T Consensus 134 l~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 134 CARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp CTTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---
T ss_pred CCCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---
Confidence 6666554 22200 01345556666666666653 33 55666677777777766643
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688 193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS 241 (244)
Q Consensus 193 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 241 (244)
.+..+++|+.|++++|.+++ +| +..+++|+.|++++|+++++.+..
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 25667777788888887774 45 677778888888888887765433
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.9e-19 Score=154.31 Aligned_cols=186 Identities=23% Similarity=0.336 Sum_probs=111.9
Q ss_pred hcCCCCCCCCCc-----ceeee-eeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688 30 LAKNWNTSAPVC-----NWTGV-TCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTL 103 (244)
Q Consensus 30 ~~~~w~~~~~~c-----~~~g~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 103 (244)
+.. |......| .|.++ .|. ..+++.|+++++.+++ +|..+. ++|++|++++|.+. .+| ..+++|
T Consensus 33 l~~-W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDK-WEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHH-HHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHH-HhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 344 66666666 57777 453 2356667777766664 444332 45666666666555 444 234455
Q ss_pred cEEEecCCccCCCCCcccc------------------CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccccc
Q 048688 104 KDVSFRENQLTGVFPSFIF------------------NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165 (244)
Q Consensus 104 ~~L~l~~~~l~~~~~~~~~------------------~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 165 (244)
++|++++|.+++ +|. +. .+++|++|++++|.++ .+|. .+++|++|++++|.+++
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-
T ss_pred CEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-
Confidence 555555555543 333 22 3455555555555554 3443 24566677777776663
Q ss_pred CCccccCCCCCcEEeeccCcccccCCccccCCCCC-------CEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688 166 IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL-------MGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 166 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (244)
+|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 555 44 67777777777776 4554 433 56 88888888887 67777777888888888888888776
Q ss_pred CCC
Q 048688 239 LYS 241 (244)
Q Consensus 239 ~~~ 241 (244)
|..
T Consensus 247 p~~ 249 (571)
T 3cvr_A 247 RES 249 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.9e-19 Score=133.33 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=129.3
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+.+++.|+++++.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 467899999999998 556 6889999999999999775 345788999999999999999977788899999999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEccccc-ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
+++|.+++..+..+ ..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKI-NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHH-hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 99999985566656 889999999999998 65 555 68899999999999999985 44 678899999999999998
Q ss_pred cc
Q 048688 211 QG 212 (244)
Q Consensus 211 ~~ 212 (244)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 93
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=4.1e-21 Score=170.85 Aligned_cols=229 Identities=20% Similarity=0.202 Sum_probs=112.0
Q ss_pred ccCCchhHHHHHHHHHHhcccCCcchhcCCC-CCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEE
Q 048688 4 NTRTITTDQDALLALKAHITHDPTNFLAKNW-NTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSL 82 (244)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w-~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L 82 (244)
+......++.++.++.+......+..-.. | ......+.|.+..+.. ++++.|++.++.+.. .+..+.....|+.+
T Consensus 126 s~s~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 126 SKSLVDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQY 201 (727)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred hhhccccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcc
Confidence 33456677889999998875443333333 5 3334556677766543 567888888777764 33333333333332
Q ss_pred e-----CCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 83 D-----LSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 83 ~-----l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
. +..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|++
T Consensus 202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L 277 (727)
T 4b8c_D 202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDL 277 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEEC
T ss_pred cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeC
Confidence 2 2333333 45666777778888888888777 55555667788888888888877 777666 67778888888
Q ss_pred ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC-CCEEEccCCccCc
Q 048688 158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE-LEQMSLAENNLQA 236 (244)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~ 236 (244)
++|.++ .+|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 888877 66777777888888888888776 56666777788888888888877666655533211 1234556666665
Q ss_pred ccCCCC
Q 048688 237 LLLYSF 242 (244)
Q Consensus 237 ~~~~~~ 242 (244)
.+|.++
T Consensus 356 ~~p~~l 361 (727)
T 4b8c_D 356 PLPHER 361 (727)
T ss_dssp CCCCC-
T ss_pred cCcccc
Confidence 555543
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=4.1e-20 Score=149.28 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=149.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
.++++.|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEE
Confidence 5689999999999997777899999999999999999974443 88999999999999998743 2348999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc-cCCCCCCEEEccCCcc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRL 210 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l 210 (244)
+++|.+. .++. ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+
T Consensus 106 l~~n~l~-~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCS-EEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccC-CcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 9999998 5554 346889999999999997777788999999999999999987666666 4789999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCccCcccCC
Q 048688 211 QGEIPREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
++. + ....+++|+.|++++|+++++.+.
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEECGG
T ss_pred ccc-c-cccccccCCEEECCCCcCCcchhh
Confidence 854 3 334589999999999999987553
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.1e-19 Score=153.36 Aligned_cols=135 Identities=25% Similarity=0.349 Sum_probs=106.3
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
+|++|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. + .. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEEC
Confidence 89999999999984 77665 378999999999998 566 45799999999999998 5877 4 33 8899999
Q ss_pred ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.|+.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence 9998884 665 56788888888888874 454 45677888888888774 555 44 677777777777774
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=7.2e-21 Score=154.69 Aligned_cols=179 Identities=19% Similarity=0.254 Sum_probs=89.9
Q ss_pred CceEEEEeCCCcceec-cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC-ccCC-CCCccccCCCCCCE
Q 048688 53 HKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN-QLTG-VFPSFIFNKSSLQH 129 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~-~l~~-~~~~~~~~l~~L~~ 129 (244)
++++.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ ..+..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4455555555555433 4444555555555555555554444455555555555555555 3432 13333445555555
Q ss_pred EEccCC-CCCCc-CChhhhCCCC-CCcEEEccccc--cc-ccCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCE
Q 048688 130 LDFSRN-TLSGE-IPANICSSLP-FLDYLYLSKNM--LH-GGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMG 202 (244)
Q Consensus 130 L~l~~~-~~~~~-l~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~ 202 (244)
|++++| .+++. ++..+ ..++ +|++|++++|. ++ ..++..+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 555555 44421 22222 4455 55666665552 22 2334444455566666666665 44444445555566666
Q ss_pred EEccCCc-ccccCCccccCCCCCCEEEccCC
Q 048688 203 LYLGRNR-LQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 203 L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
|++++|. +.+.....+..+++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6666553 22221223445555555555555
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.8e-19 Score=146.97 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=141.6
Q ss_pred CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCC-CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEe
Q 048688 39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLG-NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF 108 (244)
Q Consensus 39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 108 (244)
-.|.+..+.|.. ....++.|++++|.+++..+..|. .+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 445555566632 235588999999999988888887 9999999999999999667778999999999999
Q ss_pred cCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccc---cCCCCCcEEeeccCc
Q 048688 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL---SNCTYLRILSLAYND 185 (244)
Q Consensus 109 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~ 185 (244)
++|.+....+..|..+++|++|+|++|.+. .++...+..+++|++|++++|.++...+..+ ..+++|+.|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 999999777778899999999999999998 6655556899999999999999984333444 578999999999999
Q ss_pred ccccCCccccCCCC--CCEEEccCCccc
Q 048688 186 FSGAVPKDIGNLTK--LMGLYLGRNRLQ 211 (244)
Q Consensus 186 ~~~~~~~~~~~~~~--L~~L~l~~n~l~ 211 (244)
++...+..+..++. ++.|++.+|++.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 98655566777776 488999998875
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=9.8e-21 Score=153.90 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=149.8
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCC-CCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGS-IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
++++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6788899999988865554 55789999999999998754 777888999999999999998877778888999999999
Q ss_pred ccCC-CCCCc-CChhhhCCCCCCcEEEcccc-ccccc-CCccccCCC-CCcEEeeccC--ccc-ccCCccccCCCCCCEE
Q 048688 132 FSRN-TLSGE-IPANICSSLPFLDYLYLSKN-MLHGG-IPSTLSNCT-YLRILSLAYN--DFS-GAVPKDIGNLTKLMGL 203 (244)
Q Consensus 132 l~~~-~~~~~-l~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L 203 (244)
+++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|
T Consensus 149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 9999 67632 43334 77899999999999 88753 567788899 9999999999 454 3456677789999999
Q ss_pred EccCCc-ccccCCccccCCCCCCEEEccCCc
Q 048688 204 YLGRNR-LQGEIPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 204 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 233 (244)
++++|. +++..+..+..+++|+.|++++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 999999 776777788999999999999995
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=5.1e-18 Score=143.53 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=122.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+++++.|+++++.+++. | .+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+++. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 57899999999999864 5 68999999999999999984 44 88999999999999999865 3 78999999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccC----------------------ccccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN----------------------DFSGA 189 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n----------------------~~~~~ 189 (244)
+++|.+. .++ + ..+++|++|++++|.+++ ++ ++.+++|+.|++++| .+++
T Consensus 113 L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 113 CDTNKLT-KLD--V-SQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CCSSCCS-CCC--C-TTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred CCCCcCC-eec--C-CCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence 9999998 565 4 788999999999998874 32 445555555555555 4442
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
+| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 22 44455555555555555532 25566667777777777666
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=5.1e-21 Score=158.64 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=99.1
Q ss_pred CCceEEEEeCCCccee----ccCccCCCCCCCCEEeCCCCCCCCCCCccc----cCC---------CCCcEEEecCCccC
Q 048688 52 SHKVTALNISGLNLTG----TIPSQLGNLSSLQSLDLSFNRLSGSIPSAI----FTT---------YTLKDVSFRENQLT 114 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l---------~~L~~L~l~~~~l~ 114 (244)
.+++++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3455555555555543 234444455555555555555532222222 222 55555555555554
Q ss_pred -CCCC---ccccCCCCCCEEEccCCCCCCc----CChhhhCCCCCCcEEEccccccc----ccCCccccCCCCCcEEeec
Q 048688 115 -GVFP---SFIFNKSSLQHLDFSRNTLSGE----IPANICSSLPFLDYLYLSKNMLH----GGIPSTLSNCTYLRILSLA 182 (244)
Q Consensus 115 -~~~~---~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~ 182 (244)
...+ ..+..+++|++|++++|.+... +.+..+..+++|++|++++|.++ ..+|..+..+++|+.|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 1222 2334555666666666655411 11212245666666666666663 3455556666667777777
Q ss_pred cCccccc----CCcccc--CCCCCCEEEccCCcccc----cCCccc-cCCCCCCEEEccCCccCccc
Q 048688 183 YNDFSGA----VPKDIG--NLTKLMGLYLGRNRLQG----EIPREF-GNLAELEQMSLAENNLQALL 238 (244)
Q Consensus 183 ~n~~~~~----~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 238 (244)
+|.+++. ++..+. .+++|++|++++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666543 233442 26667777777777664 255555 44667777777777766544
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=7.4e-18 Score=134.45 Aligned_cols=152 Identities=24% Similarity=0.340 Sum_probs=131.7
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688 73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152 (244)
Q Consensus 73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L 152 (244)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. + ..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCC
Confidence 346789999999999997 444 48889999999999999986544 889999999999999997 5554 4 889999
Q ss_pred cEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
++|++++|.+.. + ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 999999999984 3 4688899999999999999854 578899999999999999985444 889999999999999
Q ss_pred ccCcc
Q 048688 233 NLQAL 237 (244)
Q Consensus 233 ~l~~~ 237 (244)
.++.+
T Consensus 189 ~i~~l 193 (291)
T 1h6t_A 189 HISDL 193 (291)
T ss_dssp CCCBC
T ss_pred cCCCC
Confidence 99885
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=5.7e-20 Score=152.29 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=126.8
Q ss_pred CCCceEEEEeCCCcc---eeccCccC-------CCCCCCCEEeCCCCCCCC----CCCccccCCCCCcEEEecCCccCCC
Q 048688 51 HSHKVTALNISGLNL---TGTIPSQL-------GNLSSLQSLDLSFNRLSG----SIPSAIFTTYTLKDVSFRENQLTGV 116 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~~~l~~~ 116 (244)
..++++.|+++++.+ .+.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.+...
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 456777787777533 23333333 577788888888887775 2555667778888888888877533
Q ss_pred CCcc----ccCC---------CCCCEEEccCCCCC-CcCCh--hhhCCCCCCcEEEcccccccc-----cCCccccCCCC
Q 048688 117 FPSF----IFNK---------SSLQHLDFSRNTLS-GEIPA--NICSSLPFLDYLYLSKNMLHG-----GIPSTLSNCTY 175 (244)
Q Consensus 117 ~~~~----~~~l---------~~L~~L~l~~~~~~-~~l~~--~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~ 175 (244)
.+.. +..+ ++|++|++++|.+. ..++. ..+..+++|++|++++|.+.. ..+..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 2222 2233 78888888888775 22331 122567788888888887762 23336777888
Q ss_pred CcEEeeccCccc----ccCCccccCCCCCCEEEccCCccccc----CCcccc--CCCCCCEEEccCCccCc
Q 048688 176 LRILSLAYNDFS----GAVPKDIGNLTKLMGLYLGRNRLQGE----IPREFG--NLAELEQMSLAENNLQA 236 (244)
Q Consensus 176 L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~ 236 (244)
|+.|++++|.++ ..+|..+..+++|++|++++|.+++. ++..+. .+++|+.|++++|.++.
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 888888888875 35666777888888888888888754 455553 37888888888888877
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.1e-17 Score=125.48 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=104.1
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc-cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688 80 QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS-FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158 (244)
Q Consensus 80 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~ 158 (244)
++++++++.+. .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.++ .+++..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 68889988886 77765543 888999999988865554 4778888999999999888 4433344788888999998
Q ss_pred cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccC
Q 048688 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214 (244)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 214 (244)
+|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88888777777888888888888888888777888888888888888888887543
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=9.2e-20 Score=149.85 Aligned_cols=85 Identities=24% Similarity=0.200 Sum_probs=40.6
Q ss_pred ceEEEEeCCCcceeccC----ccCCCCC-CCCEEeCCCCCCCCCCCccccCC-----CCCcEEEecCCccCCCCCcc---
Q 048688 54 KVTALNISGLNLTGTIP----SQLGNLS-SLQSLDLSFNRLSGSIPSAIFTT-----YTLKDVSFRENQLTGVFPSF--- 120 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~--- 120 (244)
+++.|++++|.++...+ +.|..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 35555555555543333 3444444 55555555555554444444332 55555555555554333332
Q ss_pred -ccCC-CCCCEEEccCCCCC
Q 048688 121 -IFNK-SSLQHLDFSRNTLS 138 (244)
Q Consensus 121 -~~~l-~~L~~L~l~~~~~~ 138 (244)
+..+ ++|++|++++|.+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGG
T ss_pred HHHhCCCCccEEECcCCcCC
Confidence 2222 45555555555554
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.2e-17 Score=144.14 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=58.5
Q ss_pred CCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688 150 PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229 (244)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 229 (244)
++|++|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 44555566555555 233 33466777777777776 3444 4577888888888888 77888888999999999
Q ss_pred cCCccCcccCC
Q 048688 230 AENNLQALLLY 240 (244)
Q Consensus 230 ~~n~l~~~~~~ 240 (244)
++|++++.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 99998877654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.1e-17 Score=143.98 Aligned_cols=150 Identities=27% Similarity=0.327 Sum_probs=130.2
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 130 (244)
.+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+. .++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence 46899999999999986544 889999999999999997 344 788999999999999999853 458899999999
Q ss_pred EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210 (244)
Q Consensus 131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (244)
+|++|.+. .+ ..+ ..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+
T Consensus 137 ~Ls~N~l~-~l-~~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 137 YLGNNKIT-DI-TVL-SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCC-CC-GGG-GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred ECCCCccC-Cc-hhh-cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 99999998 55 444 789999999999999986555 88999999999999999853 4688999999999999998
Q ss_pred ccc
Q 048688 211 QGE 213 (244)
Q Consensus 211 ~~~ 213 (244)
.+.
T Consensus 210 ~~~ 212 (605)
T 1m9s_A 210 LNK 212 (605)
T ss_dssp ECC
T ss_pred cCC
Confidence 854
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=2.3e-17 Score=120.95 Aligned_cols=131 Identities=24% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEE
Q 048688 77 SSLQSLDLSFNRLS-GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYL 155 (244)
Q Consensus 77 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L 155 (244)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCEE
Confidence 45566666666554 34455555555666666666555533 344555555666665555552233322 345555555
Q ss_pred EcccccccccCC--ccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEccCCccc
Q 048688 156 YLSKNMLHGGIP--STLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 156 ~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~ 211 (244)
++++|.+++ ++ ..+..+++|+.|++++|.+++..+ ..+..+++|++|++.+|.+.
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555542 22 334444444444444444442222 13344444444444444443
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=9.7e-18 Score=122.93 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=118.5
Q ss_pred CCCCCcEEEecCCccC-CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCc
Q 048688 99 TTYTLKDVSFRENQLT-GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177 (244)
Q Consensus 99 ~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 177 (244)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+ ..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999997 677887889999999999999998 55 444 7899999999999999866888888899999
Q ss_pred EEeeccCcccccC-CccccCCCCCCEEEccCCcccccCC---ccccCCCCCCEEEccCCccCcccC
Q 048688 178 ILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIP---REFGNLAELEQMSLAENNLQALLL 239 (244)
Q Consensus 178 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~ 239 (244)
.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999999998542 2678899999999999999985444 478899999999999999877543
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.7e-16 Score=134.13 Aligned_cols=160 Identities=28% Similarity=0.382 Sum_probs=72.4
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
++++.|++++|.+++ +|+. ..+|++|++++|.+. .++.. .++|++|++++|.+++ +| .+..+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456666666666664 4432 245555555555544 22211 1355555555555553 33 2455555555555
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
++|.+. .+|.. ..+|++|++++|.+++ +| .++.+++|+.|++++|.+++ +|.. ..+|++|++++|.++
T Consensus 161 ~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 161 DNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 555554 33321 2345555555555442 33 34444455555555444442 2211 123444444444443
Q ss_pred cCCccccCCCCCCEEEccCCccC
Q 048688 213 EIPREFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~ 235 (244)
.+|. +..+++|+.|++++|+++
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCS
T ss_pred cccc-cCCCCCCCEEECCCCcCC
Confidence 3331 334444444444444443
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.7e-19 Score=146.25 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=125.2
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC----ccccCCC-CCcEEEecCCccCCCCCccccCC-----CC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP----SAIFTTY-TLKDVSFRENQLTGVFPSFIFNK-----SS 126 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l-----~~ 126 (244)
.+.++.+.+++.+|+.+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788889988888887777889999999999986666 6778888 89999999999987766666654 99
Q ss_pred CCEEEccCCCCCCcCChhh---hCCC-CCCcEEEcccccccccCCccc----cC-CCCCcEEeeccCcccccCC----cc
Q 048688 127 LQHLDFSRNTLSGEIPANI---CSSL-PFLDYLYLSKNMLHGGIPSTL----SN-CTYLRILSLAYNDFSGAVP----KD 193 (244)
Q Consensus 127 L~~L~l~~~~~~~~l~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~n~~~~~~~----~~ 193 (244)
|++|++++|.+.+..+..+ +... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999974443322 1334 789999999988875443332 23 3577777777777764322 22
Q ss_pred ccCCC-CCCEEEccCCcccccCCcc----ccCC-CCCCEEEccCCccCc
Q 048688 194 IGNLT-KLMGLYLGRNRLQGEIPRE----FGNL-AELEQMSLAENNLQA 236 (244)
Q Consensus 194 ~~~~~-~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~ 236 (244)
+...+ +|++|++++|.+++..+.. +..+ ++|+.|++++|.++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 23333 6667777766665443322 2333 366666666666554
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=2.2e-16 Score=133.36 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=85.8
Q ss_pred CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688 53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 132 (244)
++++.|++++|.+++ +| .|..+++|++|++++|.+. .+|.. ..+|++|++++|.+++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355666666666553 44 3666666666666666665 33332 2356666666666654 33 3556666666666
Q ss_pred cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212 (244)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (244)
++|.+. .+|.. ..+|++|++++|.+. .+|. ++.+++|+.|++++|.+++ +|.. .++|+.|++++|.+++
T Consensus 203 ~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 203 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CCCcCC-cCCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 666665 34321 235666666666665 4453 5666666666666666653 3322 2445555555555442
Q ss_pred cCCccccCCCCCCEEEccCCccCc
Q 048688 213 EIPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
+|.. .++|+.|++++|++++
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSE
T ss_pred -cCcc---cCcCCEEECcCCccCc
Confidence 2321 2344444444444444
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.1e-17 Score=144.20 Aligned_cols=160 Identities=26% Similarity=0.332 Sum_probs=93.8
Q ss_pred hcCCCCCCCCCcceeeee------eCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688 30 LAKNWNTSAPVCNWTGVT------CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTL 103 (244)
Q Consensus 30 ~~~~w~~~~~~c~~~g~~------~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 103 (244)
... |....++|.|.+.. |.....+++.|+++++.++ .+|..+. ++|++|++++|.+. .+|. .+++|
T Consensus 12 w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 12 WSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 455 77777788875532 1112234677777777776 5565554 67777777777776 4554 45677
Q ss_pred cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183 (244)
Q Consensus 104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (244)
++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|.. +++|++|++++
T Consensus 84 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 84 RTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSD 150 (622)
T ss_dssp CEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred CEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcC
Confidence 777777777663 343 4566777777777665 4544 2455666666666555 33332 24555555555
Q ss_pred CcccccCCccc-----------------cCCCCCCEEEccCCccc
Q 048688 184 NDFSGAVPKDI-----------------GNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 184 n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~l~ 211 (244)
|.+++ +|..+ ..+++|+.|++++|.++
T Consensus 151 N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 151 NQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 55542 22211 12366777777777766
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.1e-17 Score=126.90 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=126.0
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD 131 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 131 (244)
+.+++.|+++++.++ .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++.. .. ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 568999999999988 455 68899999999999999984 444 8999999999999999985 3432 23 9999999
Q ss_pred ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+++|.++ .++ .+ ..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.
T Consensus 113 L~~N~l~-~~~-~l-~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELR-DTD-SL-IHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCS-BSG-GG-TTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccC-CCh-hh-cCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 9999998 564 44 789999999999999984 44 688899999999999999865 67888999999999999987
Q ss_pred cc
Q 048688 212 GE 213 (244)
Q Consensus 212 ~~ 213 (244)
..
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.1e-16 Score=119.95 Aligned_cols=131 Identities=26% Similarity=0.317 Sum_probs=113.7
Q ss_pred EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc-cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688 56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS-AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR 134 (244)
Q Consensus 56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 134 (244)
+.++++++.++ .+|..+.. +|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788888886 56765543 899999999999855443 488999999999999999988899999999999999999
Q ss_pred CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC
Q 048688 135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190 (244)
Q Consensus 135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 190 (244)
|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9998 666665588999999999999999888999999999999999999987543
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=119.62 Aligned_cols=127 Identities=29% Similarity=0.329 Sum_probs=100.0
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc
Q 048688 80 QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK 159 (244)
Q Consensus 80 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~ 159 (244)
++++++++.+. .+|..+ .+++++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 57888888887 666654 357888888888887 56677888888888888888887 66666557888888888888
Q ss_pred ccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8888666677888888888888888887555556777888888888888775
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.9e-20 Score=162.02 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=97.3
Q ss_pred CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEc
Q 048688 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL 205 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 205 (244)
.|++|++++|.++ .+|. + ..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5889999999998 6776 5 88999999999999998 789999999999999999999985 56 7889999999999
Q ss_pred cCCcccccC-CccccCCCCCCEEEccCCccCcccCC
Q 048688 206 GRNRLQGEI-PREFGNLAELEQMSLAENNLQALLLY 240 (244)
Q Consensus 206 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 240 (244)
++|.+++.. |..++.+++|+.|++++|++++.+|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999665 88999999999999999999987664
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.2e-16 Score=116.63 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=90.8
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688 79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158 (244)
Q Consensus 79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~ 158 (244)
.+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 467777777776 555433 357788888888777655556677777888888877776 6666555677777777777
Q ss_pred cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213 (244)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 213 (244)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7777755555567777777777777777654444556677777777777777643
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.5e-18 Score=152.99 Aligned_cols=123 Identities=28% Similarity=0.339 Sum_probs=100.0
Q ss_pred ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhC
Q 048688 68 TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS 147 (244)
Q Consensus 68 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 147 (244)
..++.|..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+ .
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence 45777888899999999999887 77777788999999999999988 77888888999999999999998 888777 7
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcccc
Q 048688 148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG 195 (244)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 195 (244)
.+++|++|++++|.+. .+|..|+.+++|+.|+|++|.+++.+|..+.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 8889999999999887 7788889999999999999998876665553
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.2e-16 Score=116.33 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=111.4
Q ss_pred EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
+.++++++.++ .+|..+. ++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35788888887 5665543 68999999999998 78899999999999999999999888888999999999999999
Q ss_pred CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998 777666689999999999999999555567899999999999999875
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=5.5e-17 Score=116.51 Aligned_cols=127 Identities=22% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEE
Q 048688 77 SSLQSLDLSFNRLS-GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYL 155 (244)
Q Consensus 77 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L 155 (244)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence 34555555555544 34444445555555555555555433 344555556666666665553233322 445566666
Q ss_pred Eccccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEcc
Q 048688 156 YLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLG 206 (244)
Q Consensus 156 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 206 (244)
++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666655531 22455566666666666666654333 345566666666654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=8.6e-17 Score=115.48 Aligned_cols=127 Identities=22% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCCcEEEecCCccC-CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEE
Q 048688 101 YTLKDVSFRENQLT-GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL 179 (244)
Q Consensus 101 ~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 179 (244)
+++++|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+ ..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 344444455555555555555554 22 222 445555555555555543344444445555555
Q ss_pred eeccCccccc-CCccccCCCCCCEEEccCCcccccCC---ccccCCCCCCEEEcc
Q 048688 180 SLAYNDFSGA-VPKDIGNLTKLMGLYLGRNRLQGEIP---REFGNLAELEQMSLA 230 (244)
Q Consensus 180 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 230 (244)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555432 12344455555555555555553322 234455555555543
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=6.8e-16 Score=114.01 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=105.5
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT 136 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 136 (244)
.++++++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3455566665 345433 3689999999999986666677899999999999999997766778899999999999999
Q ss_pred CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC
Q 048688 137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190 (244)
Q Consensus 137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 190 (244)
++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 98 677766688999999999999998555556788999999999999987543
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.1e-19 Score=150.20 Aligned_cols=184 Identities=19% Similarity=0.241 Sum_probs=102.2
Q ss_pred ceEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCCCCC-----CccccCCCCCcEEEecCCccCCC----CCcc
Q 048688 54 KVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSI-----PSAIFTTYTLKDVSFRENQLTGV----FPSF 120 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~l~~l~~L~~L~l~~~~l~~~----~~~~ 120 (244)
+++.|++++|.++.. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444321 2333444455555555555443221 11111345555555555555432 2333
Q ss_pred ccCCCCCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCcccccCCc
Q 048688 121 IFNKSSLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGAVPK 192 (244)
Q Consensus 121 ~~~l~~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~ 192 (244)
+..+++|++|++++|.+.+.. ...+....++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 444566666666666554221 111212234666777766666532 344555667888888888877654333
Q ss_pred cccC-----CCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCcc
Q 048688 193 DIGN-----LTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 193 ~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
.+.. .++|++|++++|.+++ .++..+..+++|++|++++|+++..
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3322 5678888888888875 5666777788888888888887653
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.9e-18 Score=146.20 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=7.5
Q ss_pred CCceEEEEeCCCcce
Q 048688 52 SHKVTALNISGLNLT 66 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~ 66 (244)
.++++.|++++|.+.
T Consensus 112 ~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 112 LPTLQELHLSDNLLG 126 (461)
T ss_dssp CTTCCEEECCSSBCH
T ss_pred CCceeEEECCCCcCc
Confidence 345555555555443
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.6e-15 Score=123.99 Aligned_cols=178 Identities=19% Similarity=0.169 Sum_probs=131.3
Q ss_pred CCCCceEEEEeCCCcceecc-CccCCCCCCCCE-EeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688 50 VHSHKVTALNISGLNLTGTI-PSQLGNLSSLQS-LDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127 (244)
Q Consensus 50 ~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 127 (244)
..+++++.|++++|.+.+.+ +..|..++++++ +.+.+|.+....+..|..+++|++|++++|.+....+..+....++
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 35789999999999986544 467889998876 5556788886667889999999999999999986666566667778
Q ss_pred CEEEccCC-CCCCcCChhhhCCCC-CCcEEEcccccccccCCccccCCCCCcEEeecc-CcccccCCccccCCCCCCEEE
Q 048688 128 QHLDFSRN-TLSGEIPANICSSLP-FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY-NDFSGAVPKDIGNLTKLMGLY 204 (244)
Q Consensus 128 ~~L~l~~~-~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 204 (244)
..+++.++ .+. .++...+..+. .+++|++++|.++ .++.......+|+.+.+.+ |.++...++.|..+++|+.|+
T Consensus 131 ~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 131 VLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 88888664 554 77766555543 5788999999888 4555555566788888875 556644445678888999999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCC
Q 048688 205 LGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
+++|+++ .+|.. .+.+|+.|.+.++
T Consensus 209 Ls~N~l~-~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 209 ISRTRIH-SLPSY--GLENLKKLRARST 233 (350)
T ss_dssp CTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred cCCCCcC-ccChh--hhccchHhhhccC
Confidence 9999988 44432 2455556655444
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=3e-16 Score=115.90 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCccccCC-CCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688 73 LGNLSSLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151 (244)
Q Consensus 73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 151 (244)
+..+.+|++|++++|.+. .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++ .++..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 345556666666666665 3333 3333 3666666666666543 34556666666666666665 555544455666
Q ss_pred CcEEEcccccccccCCc--cccCCCCCcEEeeccCcccccCCcc----ccCCCCCCEEEccCCccc
Q 048688 152 LDYLYLSKNMLHGGIPS--TLSNCTYLRILSLAYNDFSGAVPKD----IGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 152 L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~ 211 (244)
|++|++++|.+. .+|. .+..+++|+.|++++|.++ ..|.. +..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666664 3443 5556666666666666665 33432 555666666666666544
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=5.2e-16 Score=114.57 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=112.3
Q ss_pred ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCC
Q 048688 95 SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174 (244)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 174 (244)
..+..+.+|++|++++|.++. ++......++|++|++++|.+. .+ ..+ ..+++|++|++++|.++...+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~-~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC-cc-ccc-ccCCCCCEEECCCCcccccCcchhhcCC
Confidence 346678899999999999984 4553333459999999999998 55 444 7899999999999999855445568999
Q ss_pred CCcEEeeccCcccccCCc--cccCCCCCCEEEccCCcccccCCcc----ccCCCCCCEEEccCCccCc
Q 048688 175 YLRILSLAYNDFSGAVPK--DIGNLTKLMGLYLGRNRLQGEIPRE----FGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~ 236 (244)
+|+.|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999996 4555 7888999999999999998 56664 8899999999999997644
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-15 Score=123.85 Aligned_cols=189 Identities=17% Similarity=0.134 Sum_probs=121.8
Q ss_pred CCceEEEEeCCCcce--------------------eccCccCCC--------CCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688 52 SHKVTALNISGLNLT--------------------GTIPSQLGN--------LSSLQSLDLSFNRLSGSIPSAIFTTYTL 103 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~l~~l~~L 103 (244)
+++++.|+|++|.+. .+....|.+ +.+|+.++++. .+......+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 456777777777665 233455666 78888888877 6664555677778888
Q ss_pred cEEEecCCccCCCCCccccCCCCCCEEEccCCCC-------C-------------------CcCChhhh-----------
Q 048688 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL-------S-------------------GEIPANIC----------- 146 (244)
Q Consensus 104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~-------~-------------------~~l~~~~~----------- 146 (244)
+.+++..|.+....+..|..+.++..+....... . +.++..++
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888887776655555566555555555433110 0 00000000
Q ss_pred ----------------CCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCC-EEEccCCc
Q 048688 147 ----------------SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM-GLYLGRNR 209 (244)
Q Consensus 147 ----------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~ 209 (244)
..+++|+.+++.+|.++...+..|..+.+|+.+.+.+| ++...+.+|.++.+|+ .+++.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 12567788888877777444556777888888888777 5545666777777787 887776 5
Q ss_pred ccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688 210 LQGEIPREFGNLAELEQMSLAENNLQALLLYSFM 243 (244)
Q Consensus 210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 243 (244)
++...+.+|..|++|+.|++++|.++.+.+..|.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 6545567777888888888888887777766664
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2e-18 Score=130.11 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=84.5
Q ss_pred cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688 96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175 (244)
Q Consensus 96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 175 (244)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 66666677777777766664 44 5566677777777777666 565543 445667777777777663 33 4566667
Q ss_pred CcEEeeccCcccccCC-ccccCCCCCCEEEccCCcccccCCc----------cccCCCCCCEEEccCCccCc
Q 048688 176 LRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQGEIPR----------EFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 176 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~L~l~~n~l~~ 236 (244)
|+.|++++|.++...+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ +++++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7777777777653221 3566677777777777777654443 256677777776 565544
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=1.3e-14 Score=106.37 Aligned_cols=104 Identities=23% Similarity=0.240 Sum_probs=50.9
Q ss_pred cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183 (244)
Q Consensus 104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (244)
+.++++++.++ .+|..+ .+++++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|+.|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555554 233322 245555555555554 33333334555555555555555533333445555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCCccc
Q 048688 184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 184 n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
|.+++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555433334445555555555555544
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=3.5e-14 Score=104.52 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=57.1
Q ss_pred cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183 (244)
Q Consensus 104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (244)
+.++++++.+. .+|..+ .++|++|++++|.+. .+++..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45566666654 344433 255666666666665 34333335566666666666666533333445566666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCccc
Q 048688 184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 184 n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
|.+++..+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6665433334555566666666666554
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.4e-17 Score=125.46 Aligned_cols=150 Identities=24% Similarity=0.259 Sum_probs=119.0
Q ss_pred ceEEEEeCCCcceeccCc------cCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688 54 KVTALNISGLNLTGTIPS------QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 127 (244)
.++.++++.+.+.+..|. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344445555555544444 8889999999999999998 466 8889999999999999998 567777778999
Q ss_pred CEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCc----------cccC
Q 048688 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPK----------DIGN 196 (244)
Q Consensus 128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~----------~~~~ 196 (244)
++|++++|.+. .++ .+ ..+++|++|++++|.++...+ ..+..+++|+.|++++|.+.+..|. .+..
T Consensus 96 ~~L~L~~N~l~-~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 96 EELWISYNQIA-SLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp SEEEEEEEECC-CHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CEEECcCCcCC-cCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 99999999998 565 44 678899999999999974222 4688899999999999998765443 2678
Q ss_pred CCCCCEEEccCCccc
Q 048688 197 LTKLMGLYLGRNRLQ 211 (244)
Q Consensus 197 ~~~L~~L~l~~n~l~ 211 (244)
+++|+.|+ ++.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 89999887 66665
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=6.8e-14 Score=113.33 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=139.8
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCcc----CCCCCccc------
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL----TGVFPSFI------ 121 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l----~~~~~~~~------ 121 (244)
+.+++.|++.. .++.+...+|.++.+|+.++++.|.+....+.+|..+.++..+.+..... .......|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 57899999998 88877788999999999999999988756667777777776665544111 00000000
Q ss_pred --------------------------------------------cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 122 --------------------------------------------FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 122 --------------------------------------------~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
..+++|+.+++.+|.++ .++...|..+.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence 02789999999999998 999999999999999999
Q ss_pred ccccccccCCccccCCCCCc-EEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688 158 SKNMLHGGIPSTLSNCTYLR-ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229 (244)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 229 (244)
..| ++...+..|..+.+|+ .+.+.. .++...+.+|.++.+|+.+++.+|.++...+..|..+++|+.|+.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 988 7656667899999999 999988 666577789999999999999999998677778999999999874
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=6.1e-14 Score=121.41 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=135.5
Q ss_pred CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-------------CCCCCCccccC-------------------
Q 048688 52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-------------LSGSIPSAIFT------------------- 99 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~l~~------------------- 99 (244)
.++++.|++++|.++ .+|+.++.+++|++|++++|. ..+..|..+..
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 345556777777776 678888888888888876653 22222222211
Q ss_pred -------------CCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccC
Q 048688 100 -------------TYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI 166 (244)
Q Consensus 100 -------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~ 166 (244)
...|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ +
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-C
Confidence 1258899999999985 566 889999999999999998 999877 899999999999999984 7
Q ss_pred CccccCCCCCcEEeeccCcccccC-CccccCCCCCCEEEccCCcccccCCcc---ccCCCCCCEEEc
Q 048688 167 PSTLSNCTYLRILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIPRE---FGNLAELEQMSL 229 (244)
Q Consensus 167 ~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l 229 (244)
| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+.. +..+++|+.|++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7 8999999999999999999776 899999999999999999998654422 334889999874
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=1.2e-13 Score=101.25 Aligned_cols=103 Identities=23% Similarity=0.310 Sum_probs=58.3
Q ss_pred EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688 57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT 136 (244)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 136 (244)
.++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666665 3444332 556666666666664445555666666666666666654444445556666666666666
Q ss_pred CCCcCChhhhCCCCCCcEEEccccccc
Q 048688 137 LSGEIPANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~ 163 (244)
++ .++...+..+++|++|++++|.+.
T Consensus 90 l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55 444444455555666666555554
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.4e-13 Score=101.21 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=63.1
Q ss_pred EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
+.++++++.+. .+|..+. .+|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35666666665 4554443 56666777766666555556666666666666666666544444556666666666666
Q ss_pred CCCCcCChhhhCCCCCCcEEEccccccc
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 163 (244)
.+. .++...+..+++|++|++++|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 665 555554455666666666666554
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=5.2e-12 Score=104.89 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=104.2
Q ss_pred eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC----------------------CCCccccCCCCCcEEEecCCc
Q 048688 55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG----------------------SIPSAIFTTYTLKDVSFRENQ 112 (244)
Q Consensus 55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~l~~l~~L~~L~l~~~~ 112 (244)
++.+.+.. .++.+...+|.++.+|+.++++.|.+.. ....+|..+++|+.+.+..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~- 236 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN- 236 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-
Confidence 45555543 3443445556666666666666555542 22333444444444444432
Q ss_pred cCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-----ccCCccccCCCCCcEEeeccCccc
Q 048688 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-----GGIPSTLSNCTYLRILSLAYNDFS 187 (244)
Q Consensus 113 l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~n~~~ 187 (244)
++.+....|.. .+|+.+.+. +.+. .++...|..+++|+.+.+.++.+. ...+..|..|++|+.+.+..+ ++
T Consensus 237 l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~ 312 (401)
T 4fdw_A 237 VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR 312 (401)
T ss_dssp CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE
Confidence 22222233333 445555552 2343 566666677777777777666543 234456777777777777743 55
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
......|.++.+|+.+.+..+ ++.....+|..+ +|+.+++.+|.+..+.+..|
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 455667777788888888544 554556678888 88888888887777655544
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=8.7e-15 Score=120.43 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=96.1
Q ss_pred CceEEEEeCCCcceeccCcc----CC-CCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccc-----
Q 048688 53 HKVTALNISGLNLTGTIPSQ----LG-NLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFI----- 121 (244)
Q Consensus 53 ~~l~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~----- 121 (244)
+.++.|++++|.++...... +. ...+|++|++++|.+++.....+. .+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45777888877776432222 22 225777888888777533232222 34567778888777754322222
Q ss_pred cCCCCCCEEEccCCCCCCc----CChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc----
Q 048688 122 FNKSSLQHLDFSRNTLSGE----IPANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA---- 189 (244)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~---- 189 (244)
...++|++|++++|.++.. ++..+ ...++|++|++++|.+.+. ++..+...++|+.|++++|.++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356778888887776521 22222 4566777888877776532 344555666777888877777542
Q ss_pred CCccccCCCCCCEEEccCCccccc
Q 048688 190 VPKDIGNLTKLMGLYLGRNRLQGE 213 (244)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~ 213 (244)
+...+..+++|++|++++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 223344557777788877777653
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=3.1e-15 Score=123.08 Aligned_cols=162 Identities=21% Similarity=0.167 Sum_probs=119.0
Q ss_pred CCCCCEEeCCCCCCCCCCCccccC-----CCCCcEEEecCCccCCCCCccc-cCCCCCCEEEccCCCCCCcCChhh----
Q 048688 76 LSSLQSLDLSFNRLSGSIPSAIFT-----TYTLKDVSFRENQLTGVFPSFI-FNKSSLQHLDFSRNTLSGEIPANI---- 145 (244)
Q Consensus 76 l~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~---- 145 (244)
++.|++|++++|.++......+.. ..+|++|+|++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999987443333332 3689999999998864322222 245689999999999873222222
Q ss_pred hCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEEEccCCccccc----
Q 048688 146 CSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQGE---- 213 (244)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~---- 213 (244)
....++|++|++++|.++. .++..+..+++|++|++++|.+.+. +...+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1346789999999999864 2445557788999999999998643 245566778999999999999853
Q ss_pred CCccccCCCCCCEEEccCCccCcc
Q 048688 214 IPREFGNLAELEQMSLAENNLQAL 237 (244)
Q Consensus 214 ~~~~l~~l~~L~~L~l~~n~l~~~ 237 (244)
++..+..+++|++|++++|+|+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 344556678999999999998754
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=3.2e-12 Score=104.11 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=80.0
Q ss_pred EEEecCC-ccCCCCCccccCCCCCCEEEccC-CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec
Q 048688 105 DVSFREN-QLTGVFPSFIFNKSSLQHLDFSR-NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182 (244)
Q Consensus 105 ~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (244)
.++++++ .++ .+|. +..+.+|++|+|++ |.+. .++...|..+++|++|++++|.+++..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 677 4677 88888888888886 8887 6776666888888888888888887777788888888888888
Q ss_pred cCcccccCCccccCCCCCCEEEccCCccc
Q 048688 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
+|.+++..+..+..+. |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888755555555444 888888888876
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=2.7e-11 Score=100.53 Aligned_cols=181 Identities=13% Similarity=0.149 Sum_probs=117.0
Q ss_pred ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688 54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133 (244)
Q Consensus 54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 133 (244)
+++.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|..+++|+.+++..+.++......|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5777887665 665667788774 799999986 56546667899999999999998877744444443 5677777776
Q ss_pred CCCCCCcCChhhhCCCCCCcEEEcccc---------------------cccccCCccccCCCCCcEEeeccCccc-----
Q 048688 134 RNTLSGEIPANICSSLPFLDYLYLSKN---------------------MLHGGIPSTLSNCTYLRILSLAYNDFS----- 187 (244)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~---------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~----- 187 (244)
.+ +. .++...|..+++|+.+.+..+ .++..-...|..|++|+.+.+.++.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 43 44 566666666666666666443 122223445666677777777665543
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
...+..|.++.+|+.+.+.+ .++.....+|..|.+|+.+.+..+ ++.+-+..|
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 24445666677777777763 355444566777777777777444 555444444
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=9.4e-14 Score=120.87 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=46.6
Q ss_pred eEEEEeCCCc-cee-ccCccCCCCCCCCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCC----CCCccccCC
Q 048688 55 VTALNISGLN-LTG-TIPSQLGNLSSLQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTG----VFPSFIFNK 124 (244)
Q Consensus 55 l~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~----~~~~~~~~l 124 (244)
++.|+++++. +.. .++..+..+++|++|++++|.+.+. ++..+..+++|++|+++++.+.+ .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666554 211 1122223456666666666655433 22233445556666665555542 122223345
Q ss_pred CCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157 (244)
Q Consensus 125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l 157 (244)
++|++|++.+|.+. .++..+ ..+++|++|++
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l 250 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFF-KAAANLEEFCG 250 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHH-HHCTTCCEEEE
T ss_pred CCCcEEeccCccHH-HHHHHH-hhhhHHHhhcc
Confidence 55666666555544 233222 33444444444
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=7.1e-14 Score=121.63 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=40.8
Q ss_pred CCCCCcEEEecCCccCCC----CCccccCCCCCCEEEccCCCCCC----cCChhhhCCCCCCcEEEcccccccccCCccc
Q 048688 99 TTYTLKDVSFRENQLTGV----FPSFIFNKSSLQHLDFSRNTLSG----EIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170 (244)
Q Consensus 99 ~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 170 (244)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+ .++. ++..+++|++|++++|.+. .++..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEIL-ELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-GGHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHH-HHHHHH
Confidence 455666666666655433 12223345666666666665541 1111 2234566666666666554 234444
Q ss_pred cCCCCCcEEeec
Q 048688 171 SNCTYLRILSLA 182 (244)
Q Consensus 171 ~~~~~L~~L~l~ 182 (244)
..+++|+.|+++
T Consensus 240 ~~~~~L~~L~l~ 251 (592)
T 3ogk_B 240 KAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEEEC
T ss_pred hhhhHHHhhccc
Confidence 444455555444
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=9.5e-12 Score=101.32 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=85.8
Q ss_pred EEeCCC-cceeccCccCCCCCCCCEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688 58 LNISGL-NLTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135 (244)
Q Consensus 58 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 135 (244)
++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555 666 4777 88999999999996 9998666678999999999999999999888888899999999999999
Q ss_pred CCCCcCChhhhCCCCCCcEEEccccccc
Q 048688 136 TLSGEIPANICSSLPFLDYLYLSKNMLH 163 (244)
Q Consensus 136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 163 (244)
.++ .+|...+..+. |++|++.+|.+.
T Consensus 91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 998 78877766555 999999998875
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=2.1e-13 Score=118.61 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCceEEEEeCCCcceeccCccCC-CCCCCCEEeCCCC-CCCCC-CCccccCCCCCcEEEecCCccCCCCCccc----cCC
Q 048688 52 SHKVTALNISGLNLTGTIPSQLG-NLSSLQSLDLSFN-RLSGS-IPSAIFTTYTLKDVSFRENQLTGVFPSFI----FNK 124 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~----~~l 124 (244)
.++++.|+++++.+++..+..+. .+++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34666777776666544444443 4567777777666 33311 22333356677777777766554332222 245
Q ss_pred CCCCEEEccCCC--CCCcCChhhhCCCCCCcEEEcccc
Q 048688 125 SSLQHLDFSRNT--LSGEIPANICSSLPFLDYLYLSKN 160 (244)
Q Consensus 125 ~~L~~L~l~~~~--~~~~l~~~~~~~~~~L~~L~l~~~ 160 (244)
++|++|+++++. +.......+...+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 567777776665 111111112233566666666665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.25 E-value=6.8e-14 Score=121.76 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCCcEEEecCCccCCCCCcccc-CCCCCCEEEcc--C----CCCCCcCCh-----hhhCCCCCCcEEEcccccccccCC
Q 048688 100 TYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFS--R----NTLSGEIPA-----NICSSLPFLDYLYLSKNMLHGGIP 167 (244)
Q Consensus 100 l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~l~~-----~~~~~~~~L~~L~l~~~~~~~~~~ 167 (244)
+++|++|.+.++.+++.....+. .+++|++|++. + +.++ ..|. .++..+++|++|++++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 44444444444444332222222 35666666666 2 2333 2111 1124456677777755 3433322
Q ss_pred ccccC-CCCCcEEeeccCcccccCCccc-cCCCCCCEEEccCCcccccCCc-cccCCCCCCEEEccCCccC
Q 048688 168 STLSN-CTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPR-EFGNLAELEQMSLAENNLQ 235 (244)
Q Consensus 168 ~~l~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 235 (244)
..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... .+..+++|+.|++++|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33333 6778888888887764433333 5678888888888888643332 3445788888888888773
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=5.5e-11 Score=97.24 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCceEEEEeCCCccee-c-------cCccCCCCCCCCEEeCCCCCCC---------CCCCccccCCCCCcEEEecCCccC
Q 048688 52 SHKVTALNISGLNLTG-T-------IPSQLGNLSSLQSLDLSFNRLS---------GSIPSAIFTTYTLKDVSFRENQLT 114 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~~-~-------~~~~~~~l~~L~~L~l~~n~i~---------~~~~~~l~~l~~L~~L~l~~~~l~ 114 (244)
..+|+.|.+....+.+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|.++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456677666544331 1 1223445678888877654321 113344456788888888776311
Q ss_pred CCCCccccCCCCCCEEEccCCCCCCcCChhhh-CCCCCCcEEEcccc--cccc-----cCCccc--cCCCCCcEEeeccC
Q 048688 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC-SSLPFLDYLYLSKN--MLHG-----GIPSTL--SNCTYLRILSLAYN 184 (244)
Q Consensus 115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~~~~~L~~L~l~~~--~~~~-----~~~~~l--~~~~~L~~L~l~~n 184 (244)
.++. + .+++|++|++..+.+.......+. ..+++|++|+++.+ ...+ .+...+ ..+++|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2222 3 377888888887766533222331 25788888887531 1110 111122 24678888888888
Q ss_pred cccccCCccc---cCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCccCc
Q 048688 185 DFSGAVPKDI---GNLTKLMGLYLGRNRLQGE----IPREFGNLAELEQMSLAENNLQA 236 (244)
Q Consensus 185 ~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~ 236 (244)
.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 7653222222 2467788888888887753 33334456888888888887653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1.2e-10 Score=95.32 Aligned_cols=177 Identities=12% Similarity=0.149 Sum_probs=116.3
Q ss_pred CCceEEEEeCCCcce---------eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCcccc
Q 048688 52 SHKVTALNISGLNLT---------GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIF 122 (244)
Q Consensus 52 ~~~l~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 122 (244)
+++++.|.+...... +.+...+..+++|+.|.++++.-. .++. + .+++|++|++..+.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 467888888654321 123345567899999999887322 2332 3 388999999998887643323333
Q ss_pred --CCCCCCEEEccC--CCCCC-----cCChhhh-CCCCCCcEEEcccccccccCCccc---cCCCCCcEEeeccCccccc
Q 048688 123 --NKSSLQHLDFSR--NTLSG-----EIPANIC-SSLPFLDYLYLSKNMLHGGIPSTL---SNCTYLRILSLAYNDFSGA 189 (244)
Q Consensus 123 --~l~~L~~L~l~~--~~~~~-----~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~ 189 (244)
.+|+|++|+|+. +...+ .+...+. ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 689999999853 11111 1112221 247899999999998864332222 3578999999999988753
Q ss_pred ----CCccccCCCCCCEEEccCCcccccCCccccC-CCCCCEEEccCCc
Q 048688 190 ----VPKDIGNLTKLMGLYLGRNRLQGEIPREFGN-LAELEQMSLAENN 233 (244)
Q Consensus 190 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 233 (244)
++..+..+++|+.|++++|.+++.....+.. + ...+++++++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2333456789999999999988654444443 2 3567888776
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=4.1e-09 Score=78.05 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCCCcEEeeccCccccc----CCccccCCCCCCEEEc--cCCccccc----CCccccCCCCCCEEEccCCcc
Q 048688 173 CTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYL--GRNRLQGE----IPREFGNLAELEQMSLAENNL 234 (244)
Q Consensus 173 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 234 (244)
.++|++|++++|.+... +...+...+.|++|++ ++|.+.+. +...+...++|+.|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34455555555554321 1233444455556665 55555432 223334445566666666554
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=4.3e-09 Score=77.94 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCcEEEccccccccc----CCccccCCCCCcEEee--ccCccccc----CCccccCCCCCCEEEccCCccc
Q 048688 150 PFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSL--AYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 150 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
++|++|++++|.+... +...+...++|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455555555544321 2333444455666666 55555422 1223344556666666666654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=5.6e-08 Score=70.74 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccc-ccccCCccccCC----CCCcEEeeccCc-ccccCCccccCCC
Q 048688 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHGGIPSTLSNC----TYLRILSLAYND-FSGAVPKDIGNLT 198 (244)
Q Consensus 125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~ 198 (244)
..|++|+++++.++..-...+ ..+++|++|++++|. +++.--..+..+ ++|+.|++++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356666666666553333333 456666666666653 443222223332 246666666653 5433333444556
Q ss_pred CCCEEEccCCc
Q 048688 199 KLMGLYLGRNR 209 (244)
Q Consensus 199 ~L~~L~l~~n~ 209 (244)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666553
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=3.9e-06 Score=69.29 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=102.6
Q ss_pred CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCC---------------------CCCCccccCCCCCcEEEec
Q 048688 51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS---------------------GSIPSAIFTTYTLKDVSFR 109 (244)
Q Consensus 51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~---------------------~~~~~~l~~l~~L~~L~l~ 109 (244)
...+++.+.+..+ ++.+...+|..+..|+.+.+..+... ......+..+..++.+.+.
T Consensus 183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcC
Confidence 3456666666554 44345566777777777666543221 0111223334444444444
Q ss_pred CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc
Q 048688 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189 (244)
Q Consensus 110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 189 (244)
.+... .....+..+..++.+..... .++...|....+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..
T Consensus 262 ~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 262 NNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp CTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred CCcce-eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence 33222 23333444455555544332 244455566777888877654 44344567788888888888654 5445
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
...+|.++.+|+.+.+..+ ++.....+|..|.+|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5677888888888888765 55455677888888988888655
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=5.4e-06 Score=68.47 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=117.0
Q ss_pred eCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccC-------------
Q 048688 48 CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT------------- 114 (244)
Q Consensus 48 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~------------- 114 (244)
+.....+++.+.+..+. ..+....|..+.+|+.+.+..+ +......++..+..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 33456788899987654 3366788999999999999876 33244556667777776665543221
Q ss_pred --------CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688 115 --------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186 (244)
Q Consensus 115 --------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (244)
......+..+..++.+.+..+.. .+....|.....++.+......+ ....+..+.+|+.+.+..+ +
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C
T ss_pred EEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-c
Confidence 11122233444555555544322 33344444555555554443322 2245677888888888765 4
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242 (244)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (244)
+.....+|.++.+|+.+++..+ ++.....+|..|.+|+.+++..+ ++.+-...|
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 4456677888999999999654 65455678999999999999776 666555554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=2.4e-05 Score=64.50 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=71.6
Q ss_pred cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCC
Q 048688 120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK 199 (244)
Q Consensus 120 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 199 (244)
.|..+..|+.+.+..+.. .+....|..+..|+.+.+.. .++......|..|.+|+.+.+..+ ++.....+|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 345566677777655433 45555666677777777753 343234456777888888888665 44355667778888
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 048688 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 200 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 233 (244)
|+.+.+..+ ++.....+|..|.+|+.+++.++.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888888544 553445678888888888887764
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=1.3e-05 Score=65.77 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688 99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178 (244)
Q Consensus 99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 178 (244)
.+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|....+|+.+.+..+ +.......|..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3444555555433 22233344556677777777654 43 566666666777777776543 33233446677777777
Q ss_pred EeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688 179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 232 (244)
+.+..+.++......|.++.+|+.+.+..+ ++.....+|..|.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777776666555667777777777777543 44344556777777777776443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=5.8e-07 Score=70.04 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=67.4
Q ss_pred EeCCCCCCCCCCCc----cccCCCCCcEEEecCCccCC--CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCC--CCc
Q 048688 82 LDLSFNRLSGSIPS----AIFTTYTLKDVSFRENQLTG--VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP--FLD 153 (244)
Q Consensus 82 L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~--~L~ 153 (244)
++++.|... .++. ....+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+. .+ ..+ ..+. +|+
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l-~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-REL-DKIKGLKLE 223 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGG-GGGTTSCCS
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhh-hhcccCCcc
Confidence 566666433 2222 22468899999999999986 34456678999999999999997 33 222 3333 899
Q ss_pred EEEcccccccccCC-------ccccCCCCCcEEe
Q 048688 154 YLYLSKNMLHGGIP-------STLSNCTYLRILS 180 (244)
Q Consensus 154 ~L~l~~~~~~~~~~-------~~l~~~~~L~~L~ 180 (244)
+|++.+|.+.+.+| ..+..+++|+.|+
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999999876555 2456788898876
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4e-07 Score=70.99 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=44.4
Q ss_pred CCCCCcEEEcccccccc--cCCccccCCCCCcEEeeccCcccccCCccccCCC--CCCEEEccCCcccccCC-------c
Q 048688 148 SLPFLDYLYLSKNMLHG--GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT--KLMGLYLGRNRLQGEIP-------R 216 (244)
Q Consensus 148 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-------~ 216 (244)
.+++|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++.+|++.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35566666666666654 2334445566666666666666533 1222222 67777777777665443 2
Q ss_pred cccCCCCCCEEE
Q 048688 217 EFGNLAELEQMS 228 (244)
Q Consensus 217 ~l~~l~~L~~L~ 228 (244)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245666666665
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=8.3e-06 Score=67.32 Aligned_cols=132 Identities=15% Similarity=0.251 Sum_probs=95.2
Q ss_pred ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCC
Q 048688 95 SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174 (244)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 174 (244)
.+|..+.+|+.+.+..+... .....|..+..|+.+.+.. .+. .++...|..+.+|+.+.+..+ ++..-...|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 45667888999888765443 5556788899999999964 455 788888899999999999765 5534557899999
Q ss_pred CCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 048688 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234 (244)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 234 (244)
+|+.+.+..+ ++.....+|.++.+|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9999999765 55466778999999999999887643 24567788899998877654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=1.4e-05 Score=65.46 Aligned_cols=149 Identities=13% Similarity=0.202 Sum_probs=109.2
Q ss_pred cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCC
Q 048688 69 IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148 (244)
Q Consensus 69 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~ 148 (244)
....+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++......+..+.+|+.+.+..+ +. .++...|..
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~ 284 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG 284 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence 3455666778888888654 33245567788899999998765 44455667788899999998754 54 677888888
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223 (244)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 223 (244)
+.+|+.+.+..+.++..-...|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.....+|..+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 999999999888777555678899999999999765 44456678888999999888654 44344556666643
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.7e-07 Score=67.09 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=5.6
Q ss_pred CCCCCcEEeeccC
Q 048688 172 NCTYLRILSLAYN 184 (244)
Q Consensus 172 ~~~~L~~L~l~~n 184 (244)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=3.1e-05 Score=57.30 Aligned_cols=109 Identities=8% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCCCCEEEccCC-CCCC----cCChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc----C
Q 048688 124 KSSLQHLDFSRN-TLSG----EIPANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA----V 190 (244)
Q Consensus 124 l~~L~~L~l~~~-~~~~----~l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~ 190 (244)
-+.|++|+|+++ .+.. .+...+ ..-+.|+.|++++|.+.+. +...+..-+.|++|+|+.|.|... +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 345555555553 4431 122222 3444566666666655432 222333445666666666665432 1
Q ss_pred CccccCCCCCCEEEccCC---cccc----cCCccccCCCCCCEEEccCCc
Q 048688 191 PKDIGNLTKLMGLYLGRN---RLQG----EIPREFGNLAELEQMSLAENN 233 (244)
Q Consensus 191 ~~~~~~~~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~ 233 (244)
-+.+.....|++|+|++| .+.+ .+...+...+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223444555666666543 2222 233344555666666666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.00098 Score=45.87 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=37.8
Q ss_pred EEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688 154 YLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211 (244)
Q Consensus 154 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (244)
.++.+++.++ ..+|..+ ..+++.|+|++|.++...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2345332 236788888888887555666777788888888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00024 Score=52.53 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=66.4
Q ss_pred CCCCCCcEEEcccc-cccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEEEccCCcccc----c
Q 048688 147 SSLPFLDYLYLSKN-MLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQG----E 213 (244)
Q Consensus 147 ~~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~----~ 213 (244)
..-+.|++|+++++ .+.. .+.+.+..-+.|+.|+|++|.+... +...+.....|++|+|+.|.+.+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 56778999999985 6643 2445666778999999999998643 23445667899999999999985 3
Q ss_pred CCccccCCCCCCEEEccCC
Q 048688 214 IPREFGNLAELEQMSLAEN 232 (244)
Q Consensus 214 ~~~~l~~l~~L~~L~l~~n 232 (244)
+...+..-+.|+.|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 4556777788999999865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0038 Score=42.87 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=17.5
Q ss_pred CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccc
Q 048688 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162 (244)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 162 (244)
++++|+|++|.++ .++...|..+++|++|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555554 44444444444555555554433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.34 E-value=3.2 Score=26.56 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=28.8
Q ss_pred cceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688 64 NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111 (244)
Q Consensus 64 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 111 (244)
.++.+-..+|.++..|+.+.+..+- +.....+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 4444455667777777777776542 2245556667777777766543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.23 E-value=11 Score=24.06 Aligned_cols=46 Identities=20% Similarity=0.063 Sum_probs=33.0
Q ss_pred ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCC
Q 048688 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208 (244)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 208 (244)
++..-...|.+|.+|+.+.+-.+- +.+...+|..|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 443344678888889888887763 3356677888888998888654
Done!