BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048689
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 38 LKKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSN 97
+ KK + P++ + PL+G L L H + KYGPI+++++G K ++V +
Sbjct: 1 MAKKTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGH 60
Query: 98 WEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKI--ATIELL--S 153
++AKE K F+GRP+ ++ N I FA G +W+ R++ AT L
Sbjct: 61 HQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDG 120
Query: 154 NRRLEKL 160
+++LEK+
Sbjct: 121 DQKLEKI 127
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P WPLIGH+ L G P H L M+ +YG + +++G +V+S + ++
Sbjct: 13 PPGPWGWPLIGHMLTL-GKNP-HLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAP-YGNYWRQSRKIA 147
F GRP L+ N + F+P G W R++A
Sbjct: 71 RQGDDFKGRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLA 111
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 54 PLI-GHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAF 112
PL+ G LH+L+ + P H L ++ K GP++ ++LG+++ +V+++ +E F
Sbjct: 32 PLVPGFLHLLQPNLPIH--LLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDF 89
Query: 113 AGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRR 156
AGRP+ + +L+ I Y W+ +K+ LL R
Sbjct: 90 AGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR 133
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 41 KQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEI 100
K + PE G WPL+GH+ L G P H L M+ +YG + +++G LV+S +
Sbjct: 13 KGLKSPPEPWG-WPLLGHVLTL-GKNP-HLALSRMSQRYGDVLQIRIGSTPVLVLSRLDT 69
Query: 101 AKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA-----TIELLSNR 155
++ F GRP + L+ + G W R++A T + S+
Sbjct: 70 IRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDP 129
Query: 156 RLEKLKHVRE---SEVKASIQRL 175
++ E E KA I RL
Sbjct: 130 ASSSSCYLEEHVSKEAKALISRL 152
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
KK ++ P P+IG++ + G + + L N++ YGP+FT+ G+K +V+ +
Sbjct: 3 KKTSSKGRPPGPTPLPVIGNI-LQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGY 61
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIEL----LSN 154
E KE + F+GR E F ++ F+ G W++ R+ + + L +
Sbjct: 62 EAVKEALIDLGEEFSGRGIFPLAERANRGFGIV-FS-NGKKWKEIRRFSLMTLRNFGMGK 119
Query: 155 RRLEKLKHVRESEVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRY 214
R +E V+E E + ++ L K + L ++I II KR+
Sbjct: 120 RSIE--DRVQE-EARCLVEELRKT--------KASPCDPTFILGCAPCNVICSIIFHKRF 168
Query: 215 TSQSQEVNDWQQQITK 230
+ Q+ + +++ +
Sbjct: 169 DYKDQQFLNLMEKLNE 184
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
KK ++ P AWPLIG+ + + AH +A +YG +F ++LG +V++
Sbjct: 3 KKTSSKGKPPGPFAWPLIGNAAAV--GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGE 60
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ AFA RP + ++ + F Y +W+ R+ A
Sbjct: 61 RAIHQALVQQGSAFADRPSFASFRVVSGG-RSMAFGHYSEHWKVQRRAA 108
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 77 DKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPY 136
+KYG +FT+ LG + +++ E +E +AF+GR K + + VI FA
Sbjct: 41 EKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYGVI-FA-N 98
Query: 137 GNYWRQSRKIATIEL----LSNRRLEKLKHVRESEVKASIQRLYKNCIXXXXXXXXXXXE 192
GN W+ R+ + + + R +E + ++E E + I+ L K+ +
Sbjct: 99 GNRWKVLRRFSVTTMRDFGMGKRSVE--ERIQE-EAQCLIEELRKS--------KGALMD 147
Query: 193 MIHWLEGTVLDIILRIIAGKRYTSQSQE----VNDWQQQITKFTALSGQ 237
+ +II I+ GKR+ Q QE +N + Q + +++ GQ
Sbjct: 148 PTFLFQSITANIICSIVFGKRFHYQDQEFLKMLNLFYQTFSLISSVFGQ 196
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P+IG++ + G + + L N++ YGP+FT+ G+K +V+ +E KE
Sbjct: 13 PPGPTPLPVIGNI-LQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIEL----LSNRRLEKLKH 162
+ F+GR E F ++ F+ G W++ R+ + + L + R +E
Sbjct: 72 DLGEEFSGRGIFPLAERANRGFGIV-FS-NGKKWKEIRRFSLMTLRNFGMGKRSIE--DR 127
Query: 163 VRESEVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQEVN 222
V+E E + ++ L K + L ++I II KR+ + Q+
Sbjct: 128 VQE-EARCLVEELRKT--------KASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFL 178
Query: 223 DWQQQITK 230
+ +++ +
Sbjct: 179 NLMEKLNE 186
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P +P+IG++ + + + L ++ YGP+FT+ LG+K +V+ +
Sbjct: 4 KTSSKGKLPPGPTPFPIIGNILQIDAKD-ISKSLTKFSECYGPVFTVYLGMKPTVVLHGY 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIEL 151
E KE + FAGR E + L I F+ W++ R+ + + L
Sbjct: 63 EAVKEALVDLGEEFAGRGSVPILEKVSKG-LGIAFS-NAKTWKEMRRFSLMTL 113
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P+IG++ + + + L N++ YGP+FT+ G+++ +V+ +E+ KE
Sbjct: 13 PPGPTPLPVIGNILQIDIKD-VSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALI 71
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIEL----LSNRRLEKLKH 162
+ F+GR E F ++ F+ G W++ R+ + + L + R +E
Sbjct: 72 DLGEEFSGRGHFPLAERANRGFGIV-FS-NGKRWKEIRRFSLMTLRNFGMGKRSIE--DR 127
Query: 163 VRESEVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQEVN 222
V+E E + ++ L K + L ++I II KR+ + Q+
Sbjct: 128 VQE-EARCLVEELRKT--------KASPCDPTFILGCAPCNVICSIIFQKRFDYKDQQFL 178
Query: 223 DWQQQITK 230
+ +++ +
Sbjct: 179 NLMEKLNE 186
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + KE
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + L F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWL--------FKGYGVAFSNGERAKQLRRFSIATLRGFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTHGANIDPTFFLSRTVSNVISSIVFGDRFDYEDKE 175
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + +E
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + + F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWV--------FKGYGVVFSNGERAKQLRRFSIATLRDFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + +E
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + + F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWV--------FKGYGVVFSNGERAKQLRRFSIATLRDFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + +E
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + + F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWV--------FKGYGVVFSNGERAKQLRRFSIATLRDFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + +E
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + + F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWV--------FKGYGVVFSNGERAKQLRRFSIATLRDFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P P IG+ ++ +E + L ++++YGP+FT+ LG ++ +V+ + +E
Sbjct: 12 PPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 107 TNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRES 166
+ F+GR + + + F YG + + + S L V +
Sbjct: 71 DQAEEFSGRGEQATFDWV--------FKGYGVVFSNGERAKQLRRFSIATLRDFG-VGKR 121
Query: 167 EVKASIQRLYKNCIXXXXXXXXXXXEMIHWLEGTVLDIILRIIAGKRYTSQSQE 220
++ IQ I + +L TV ++I I+ G R+ + +E
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P+IG++ + + + N + YGP+FT+ G+ +V +
Sbjct: 4 KTSSKGKLPPGPTPLPIIGNMLQIDVKDIC-KSFTNFSKVYGPVFTVYFGMNPIVVFHGY 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIEL 151
E KE N + F+GR + ++ + +I + G W++ R+ + L
Sbjct: 63 EAVKEALIDNGEEFSGRGNSPISQRITKGLGII--SSNGKRWKEIRRFSLTTL 113
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 64 GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRP 116
SE H + + YG IF++ LG +V++ +++ KEC + FA RP
Sbjct: 32 SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP 84
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 64 GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRP 116
SE H + + YG IF++ LG +V++ +++ KEC + FA RP
Sbjct: 32 SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP 84
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 78 KYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIG--FAP 135
++G +F+++L +V++ +E T+ + A RP T++LG+ G A
Sbjct: 42 RFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLAR 101
Query: 136 YGNYWRQSRKIATIEL 151
YG WR+ R+ + L
Sbjct: 102 YGPAWREQRRFSVSTL 117
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 78 KYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIG--FAP 135
++G +F+++L +V++ +E T+ + A RP T++LG+ G A
Sbjct: 42 RFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLAR 101
Query: 136 YGNYWRQSRKIATIEL 151
YG WR+ R+ + L
Sbjct: 102 YGPAWREQRRFSVSTL 117
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P++G+L + + R + +KYG +FT+ LG + +V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNL-LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGT 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ +E +AF+GR K + + + VI FA G WR R+ +
Sbjct: 63 DAIREALVDQAEAFSGRGKIAVVDPIFQGYGVI-FA-NGERWRALRRFS 109
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P++G+L + + R + +KYG +FT+ LG + +V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNL-LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGT 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ +E +AF+GR K + + + VI FA G WR R+ +
Sbjct: 63 DAIREALVDQAEAFSGRGKIAVVDPIFQGYGVI-FA-NGERWRALRRFS 109
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P++G+L + + R + +KYG +FT+ LG + +V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNL-LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGT 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ +E +AF+GR K + + + VI FA G WR R+ +
Sbjct: 63 DAIREALVDQAEAFSGRGKIAVVDPIFQGYGVI-FA-NGERWRALRRFS 109
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P++G+L + + R + +KYG +FT+ LG + +V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNL-LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGT 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ +E +AF+GR K + + + VI FA G WR R+ +
Sbjct: 63 DAIREALVDQAEAFSGRGKIAVVDPIFQGYGVI-FA-NGERWRALRRFS 109
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 39 KKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNW 98
K + P P++G+L + + R + +KYG +FT+ LG + +V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNL-LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGT 62
Query: 99 EIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIA 147
+ +E +AF+GR K + + + VI FA G WR R+ +
Sbjct: 63 DAIREALVDQAEAFSGRGKIAVVDPIFQGYGVI-FA-NGERWRALRRFS 109
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 38 LKKKQAQQAPEAGGAWPL--IGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVV 95
+ KK + + G +PL IG+L L + +A ++GP+FT+ +G ++ +V+
Sbjct: 1 MAKKTSSKGKLPPGPFPLPIIGNLFQLELKN-IPKSFTRLAQRFGPVFTLYVGSQRMVVM 59
Query: 96 SNWEIAKECFTTNDKAFAGR 115
++ KE F+GR
Sbjct: 60 HGYKAVKEALLDYKDEFSGR 79
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 41 KQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMAD--KYGPIFTMKLGVKQALVVSNW 98
+ ++ P AGG PL+GH G A L M+ +G + +KLG K V+N
Sbjct: 19 PELREPPVAGGGVPLLGH-----GWRLARDPLAFMSQLRDHGDVVRIKLGPKTVYAVTNP 73
Query: 99 EIAKECFTTNDKAFAG 114
E+ D AG
Sbjct: 74 ELTGALALNPDYHIAG 89
>pdb|3L4D|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
Length = 453
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106
P G P +GH+ I G +P +L KYG IFTM + + VV + + FT
Sbjct: 6 PVVHGTTPFVGHI-IQFGKDPLGFML-KAKKKYGGIFTMNICGNRITVVGDVHQHSKFFT 63
Query: 107 TNDKAFAGR 115
++ + R
Sbjct: 64 PRNEILSPR 72
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 53 WPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLG 88
WPL+G L + G + H L KYG IF MKLG
Sbjct: 32 WPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLG 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,058,161
Number of Sequences: 62578
Number of extensions: 216845
Number of successful extensions: 363
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 34
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)