Query 048689
Match_columns 239
No_of_seqs 174 out of 1690
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 12:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.9E-32 4.1E-37 220.9 23.3 187 45-239 26-214 (489)
2 PLN02687 flavonoid 3'-monooxyg 100.0 8.8E-29 1.9E-33 204.5 22.4 179 46-234 35-216 (517)
3 PLN00110 flavonoid 3',5'-hydro 100.0 3.8E-27 8.1E-32 194.0 23.8 180 46-233 32-212 (504)
4 PLN03112 cytochrome P450 famil 100.0 2.6E-27 5.5E-32 195.9 22.8 197 26-233 16-216 (514)
5 PLN02971 tryptophan N-hydroxyl 100.0 5.3E-27 1.1E-31 194.8 23.4 164 46-215 58-222 (543)
6 PLN03234 cytochrome P450 83B1; 100.0 4.9E-27 1.1E-31 193.7 21.9 180 46-233 29-209 (499)
7 PTZ00404 cytochrome P450; Prov 100.0 3E-27 6.4E-32 194.2 19.3 176 46-233 31-210 (482)
8 PLN02966 cytochrome P450 83A1 100.0 6.2E-27 1.3E-31 193.0 20.5 179 46-232 30-209 (502)
9 PLN02183 ferulate 5-hydroxylas 100.0 1.6E-26 3.5E-31 191.0 20.5 172 46-232 37-209 (516)
10 PLN00168 Cytochrome P450; Prov 100.0 4.8E-26 1E-30 188.4 22.9 164 46-216 36-201 (519)
11 PLN02394 trans-cinnamate 4-mon 100.0 8.7E-26 1.9E-30 186.4 23.9 164 46-216 31-195 (503)
12 PLN02500 cytochrome P450 90B1 99.9 2E-25 4.3E-30 183.7 17.9 157 45-215 38-198 (490)
13 KOG0158 Cytochrome P450 CYP3/C 99.9 6.7E-25 1.5E-29 175.6 18.1 172 45-226 32-205 (499)
14 PLN02196 abscisic acid 8'-hydr 99.9 6.2E-25 1.3E-29 179.4 18.0 154 46-215 36-189 (463)
15 PLN02655 ent-kaurene oxidase 99.9 1.3E-24 2.8E-29 177.7 19.9 165 47-216 1-165 (466)
16 PLN03018 homomethionine N-hydr 99.9 3.9E-24 8.5E-29 176.8 21.0 165 45-215 40-205 (534)
17 PLN02290 cytokinin trans-hydro 99.9 1.6E-24 3.4E-29 179.5 17.7 159 47-216 44-222 (516)
18 PLN02302 ent-kaurenoic acid ox 99.9 1.4E-23 3E-28 173.0 20.5 156 45-215 42-203 (490)
19 PLN02774 brassinosteroid-6-oxi 99.9 4.3E-24 9.3E-29 174.5 14.4 154 46-215 32-186 (463)
20 PF00067 p450: Cytochrome P450 99.9 2.6E-24 5.5E-29 175.6 12.2 179 47-234 1-183 (463)
21 KOG0157 Cytochrome P450 CYP4/C 99.9 6.3E-23 1.4E-27 168.2 17.0 175 46-232 36-214 (497)
22 PLN03141 3-epi-6-deoxocathaste 99.9 2.3E-22 5E-27 163.9 16.7 157 45-215 7-167 (452)
23 PLN02987 Cytochrome P450, fami 99.9 4.5E-22 9.8E-27 162.5 16.7 155 46-215 31-188 (472)
24 PLN03195 fatty acid omega-hydr 99.9 2E-21 4.4E-26 160.9 16.7 156 46-216 32-193 (516)
25 PLN02936 epsilon-ring hydroxyl 99.9 1.1E-21 2.3E-26 161.4 14.4 160 46-216 13-177 (489)
26 PLN02738 carotene beta-ring hy 99.9 2.2E-21 4.8E-26 162.7 16.1 150 56-216 142-291 (633)
27 PLN02169 fatty acid (omega-1)- 99.9 8.2E-21 1.8E-25 156.4 17.0 160 45-216 32-198 (500)
28 KOG0159 Cytochrome P450 CYP11/ 99.8 1.1E-19 2.4E-24 143.6 16.4 182 49-235 54-246 (519)
29 PLN02648 allene oxide synthase 99.8 5.5E-21 1.2E-25 155.6 8.5 162 46-216 18-194 (480)
30 PLN02426 cytochrome P450, fami 99.8 3.7E-17 8.1E-22 134.7 19.9 151 53-216 49-204 (502)
31 KOG0684 Cytochrome P450 [Secon 99.7 7.7E-16 1.7E-20 119.6 14.5 171 45-231 32-206 (486)
32 COG2124 CypX Cytochrome P450 [ 99.2 3.6E-10 7.7E-15 91.3 10.9 133 68-216 24-163 (411)
33 PF13625 Helicase_C_3: Helicas 68.8 17 0.00037 24.3 5.0 39 66-106 74-112 (129)
34 KOG0114 Predicted RNA-binding 67.5 30 0.00066 22.3 5.4 57 46-106 13-75 (124)
35 PF15050 SCIMP: SCIMP protein 64.3 36 0.00079 22.3 5.4 15 45-59 69-83 (133)
36 KOG3653 Transforming growth fa 60.3 51 0.0011 27.7 6.8 18 77-94 221-238 (534)
37 PF15330 SIT: SHP2-interacting 60.2 33 0.00071 22.2 4.8 11 52-62 45-55 (107)
38 PF13893 RRM_5: RNA recognitio 57.8 29 0.00064 18.8 4.1 34 73-106 2-39 (56)
39 PF08114 PMP1_2: ATPase proteo 53.2 17 0.00036 18.7 2.0 6 29-34 29-34 (43)
40 PLN03120 nucleic acid binding 51.1 1.1E+02 0.0023 23.6 6.9 58 55-116 8-71 (260)
41 KOG4128 Bleomycin hydrolases a 45.4 98 0.0021 24.7 6.0 62 150-214 168-229 (457)
42 COG3404 Methenyl tetrahydrofol 43.9 1.3E+02 0.0027 22.0 6.3 60 167-229 7-67 (208)
43 PLN03134 glycine-rich RNA-bind 43.4 1.1E+02 0.0023 21.0 5.7 49 55-107 38-95 (144)
44 TIGR01661 ELAV_HUD_SF ELAV/HuD 42.0 89 0.0019 24.9 5.8 58 55-116 273-340 (352)
45 PF14198 TnpV: Transposon-enco 39.5 1.1E+02 0.0023 20.0 5.6 61 140-200 34-95 (111)
46 cd08780 Death_TRADD Death Doma 39.1 76 0.0016 19.7 3.7 70 137-211 13-89 (90)
47 PF09926 DUF2158: Uncharacteri 37.6 34 0.00073 18.9 1.9 18 79-96 3-20 (53)
48 PF05172 Nup35_RRM: Nup53/35/4 35.7 99 0.0022 19.7 4.1 48 66-113 16-79 (100)
49 KOG2090 Metalloendopeptidase f 33.5 3.2E+02 0.0069 24.1 7.6 42 153-200 52-93 (704)
50 KOG0107 Alternative splicing f 30.5 1.2E+02 0.0026 21.8 4.0 48 54-105 13-64 (195)
51 KOG0149 Predicted RNA-binding 30.3 2.4E+02 0.0052 21.3 5.8 50 67-116 24-82 (247)
52 PF05393 Hum_adeno_E3A: Human 28.8 1.5E+02 0.0032 18.4 4.0 6 52-57 66-71 (94)
53 PF04367 DUF502: Protein of un 28.3 70 0.0015 20.6 2.6 34 52-87 33-67 (108)
54 PRK14473 F0F1 ATP synthase sub 28.3 1.3E+02 0.0029 21.0 4.2 42 190-237 121-162 (164)
55 PF00076 RRM_1: RNA recognitio 27.4 1.2E+02 0.0026 16.8 5.5 38 69-106 12-57 (70)
56 PRK10597 DNA damage-inducible 26.8 1.6E+02 0.0034 18.0 4.1 37 70-106 24-68 (81)
57 PF14259 RRM_6: RNA recognitio 26.7 1E+02 0.0023 17.3 3.0 39 70-108 13-59 (70)
58 PHA02681 ORF089 virion membran 26.6 1.4E+02 0.003 18.2 3.3 9 70-78 55-63 (92)
59 TIGR01642 U2AF_lg U2 snRNP aux 26.0 2.2E+02 0.0048 24.1 5.9 49 68-116 432-493 (509)
60 KOG2192 PolyC-binding hnRNP-K 26.0 3.1E+02 0.0067 21.1 6.3 81 69-149 67-154 (390)
61 cd08318 Death_NMPP84 Death dom 25.2 1.7E+02 0.0037 17.9 5.4 38 137-177 18-58 (86)
62 COG1707 ACT domain-containing 25.2 1.3E+02 0.0029 21.3 3.5 38 66-103 154-196 (218)
63 PF03616 Glt_symporter: Sodium 25.2 1.1E+02 0.0025 24.8 3.8 26 54-81 343-368 (368)
64 TIGR01622 SF-CC1 splicing fact 24.1 2.6E+02 0.0057 23.3 5.9 48 69-116 386-439 (457)
65 PHA02819 hypothetical protein; 23.4 1.2E+02 0.0027 17.8 2.6 28 205-232 4-31 (71)
66 PF05165 GGDN: GGDN family; I 23.1 1.6E+02 0.0035 22.4 3.9 23 74-97 164-186 (246)
67 KOG0109 RNA-binding protein LA 22.7 1.4E+02 0.003 23.4 3.5 48 55-106 6-54 (346)
68 PHA02844 putative transmembran 22.5 1.3E+02 0.0029 17.9 2.7 28 205-232 4-31 (75)
69 PHA02975 hypothetical protein; 22.4 1.4E+02 0.0029 17.5 2.7 27 206-232 5-31 (69)
70 PF01707 Peptidase_C9: Peptida 22.3 95 0.0021 22.4 2.5 22 195-216 83-104 (202)
71 PHA02650 hypothetical protein; 22.2 1.3E+02 0.0028 18.2 2.6 28 205-232 4-31 (81)
72 PF04206 MtrE: Tetrahydrometha 22.1 94 0.002 23.4 2.5 30 50-79 154-189 (269)
73 PRK02240 GTP cyclohydrolase II 22.0 3E+02 0.0065 21.1 5.2 29 76-105 174-205 (254)
74 PF05084 GRA6: Granule antigen 21.9 2.3E+02 0.005 19.9 4.2 16 20-35 158-173 (215)
75 cd01403 Cyt_c_Oxidase_VIIb Cyt 20.9 65 0.0014 17.3 1.1 12 74-85 4-15 (51)
76 smart00362 RRM_2 RNA recogniti 20.9 1.6E+02 0.0034 16.0 5.5 39 69-107 13-58 (72)
77 TIGR01659 sex-lethal sex-letha 20.9 3.4E+02 0.0074 21.9 5.6 50 54-107 196-254 (346)
78 PF09804 DUF2347: Uncharacteri 20.5 46 0.001 25.8 0.7 34 65-98 157-194 (280)
79 PHA02692 hypothetical protein; 20.5 1.5E+02 0.0033 17.5 2.6 27 206-232 5-31 (70)
80 cd08777 Death_RIP1 Death Domai 20.4 2.2E+02 0.0049 17.5 6.2 38 137-177 13-55 (86)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-32 Score=220.92 Aligned_cols=187 Identities=35% Similarity=0.603 Sum_probs=164.3
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC-chhhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK-TMATEL 123 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-~~~~~~ 123 (239)
+.||+|+++|++||++++.. ..+|..+.+|.++|||++.+++|..++|+|+|+++++|+|++++..|++|+. ......
T Consensus 26 ~lPPGP~~lPiIGnl~~l~~-~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~ 104 (489)
T KOG0156|consen 26 NLPPGPPPLPIIGNLHQLGS-LPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY 104 (489)
T ss_pred CCCcCCCCCCccccHHHcCC-CchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence 36777789999999999983 2499999999999999999999999999999999999999999999999997 335566
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
+.++..+++++.+|+.||.+||+...+.|+...+++......++++.+++++.+ ... ++++|+.+.+..++.+
T Consensus 105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~------~~~-~~~vdl~~~l~~~~~n 177 (489)
T KOG0156|consen 105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK------SKK-GEPVDLSELLDLLVGN 177 (489)
T ss_pred hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh------cCC-CceeeHHHHHHHHHHH
Confidence 776777899998899999999999998999999999998889999999999943 111 2699999999999999
Q ss_pred HHHHHHhcccccCC-chhHHHHHHHHHHHHHhcCCCC
Q 048689 204 IILRIIAGKRYTSQ-SQEVNDWQQQITKFTALSGQFV 239 (239)
Q Consensus 204 ii~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (239)
||++++||.++..+ +++..++.+.+.+.++.++.++
T Consensus 178 vI~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (489)
T KOG0156|consen 178 VICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFN 214 (489)
T ss_pred HHHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999984 4566679999999999888764
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.97 E-value=8.8e-29 Score=204.53 Aligned_cols=179 Identities=27% Similarity=0.575 Sum_probs=145.7
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++++. .+++..+.+|+++||+++++++|+.++++++||+++++++.++...|.+++.......++
T Consensus 35 ~pPgp~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~ 112 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLG--PKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMA 112 (517)
T ss_pred CCccCCCCCccccHHhcC--CchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhc
Confidence 566677899999998887 678999999999999999999999999999999999999998778888887654333343
Q ss_pred CCcceEEecCCCchhHHHHHHHH-HhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIAT-IELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~-~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
....+++++.+|+.|+++||+++ + +|+.+.++.+.+.+.+++.++++.|.+. .. +.++|+.+.+..+++|+
T Consensus 113 ~~~~~~l~~~~g~~Wk~~Rr~l~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~--~~~vd~~~~~~~~t~dv 184 (517)
T PLN02687 113 YNYQDLVFAPYGPRWRALRKICAVH-LFSAKALDDFRHVREEEVALLVRELARQ-----HG--TAPVNLGQLVNVCTTNA 184 (517)
T ss_pred cCCceeEeCCCCHHHHHHHHHHHHH-hCCHHHHHHhHHHHHHHHHHHHHHHHHh-----cC--CCceeHHHHHHHHHHHH
Confidence 32335666667999999999999 6 8999999999999999999999999432 11 35799999999999999
Q ss_pred HHHHHhcccccC--CchhHHHHHHHHHHHHHh
Q 048689 205 ILRIIAGKRYTS--QSQEVNDWQQQITKFTAL 234 (239)
Q Consensus 205 i~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~ 234 (239)
++.++||.++.. .+++...+.+.+.+++..
T Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (517)
T PLN02687 185 LGRAMVGRRVFAGDGDEKAREFKEMVVELMQL 216 (517)
T ss_pred HHHHHhCccccccCCcchHHHHHHHHHHHHHH
Confidence 999999998743 223445566666665543
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=3.8e-27 Score=194.01 Aligned_cols=180 Identities=26% Similarity=0.490 Sum_probs=141.6
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. .+++..+.+++++||+|+++++|+.++|+++||+++++++.++...|.+++.........
T Consensus 32 ~pPgp~~~Pl~G~l~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~~~ 109 (504)
T PLN00110 32 LPPGPRGWPLLGALPLLG--NMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATHLA 109 (504)
T ss_pred CcccCCCCCeeechhhcC--CchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhhhc
Confidence 455666899999998886 568999999999999999999999999999999999999998888888887543222111
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDII 205 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii 205 (239)
.+..+.+++.+|+.|+++|+.+++++|+++.++.+.+.+.+++..+++.+.+.+ . .|+++|+.+.+..+++|+|
T Consensus 110 ~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~----~--~g~~~~~~~~~~~~~~~vi 183 (504)
T PLN00110 110 YGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELS----Q--RGEPVVVPEMLTFSMANMI 183 (504)
T ss_pred cCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhc----c--CCCcEeHHHHHHHHHHHHH
Confidence 122234556679999999999997589999999999999999999999985431 1 2458999999999999999
Q ss_pred HHHHhccccc-CCchhHHHHHHHHHHHHH
Q 048689 206 LRIIAGKRYT-SQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 206 ~~~~fG~~~~-~~~~~~~~~~~~~~~~~~ 233 (239)
++++||.++. ..+.+..++.+.+.+.+.
T Consensus 184 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~ 212 (504)
T PLN00110 184 GQVILSRRVFETKGSESNEFKDMVVELMT 212 (504)
T ss_pred HHHHhCCcccccCchhHHHHHHHHHHHHH
Confidence 9999999862 222334456666665544
No 4
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=2.6e-27 Score=195.95 Aligned_cols=197 Identities=27% Similarity=0.479 Sum_probs=147.8
Q ss_pred HHHHHHhhhcccccccccCCCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHH
Q 048689 26 FLLISRNGQKRTLKKKQAQQAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECF 105 (239)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il 105 (239)
.++++++++.+..... ..||+|.++|++||+.++. .+++..+.+++++||+++++++|+.++++++||+++++++
T Consensus 16 ~~~~~~~~~~~~~~~~---~~ppgp~~~pl~G~~~~~~--~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl 90 (514)
T PLN03112 16 NVLIWRWLNASMRKSL---RLPPGPPRWPIVGNLLQLG--PLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREIL 90 (514)
T ss_pred HHHHHHHccccccCCC---CCccCCCCCCeeeeHHhcC--CchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHH
Confidence 3334555554333332 4566777899999998887 6789999999999999999999999999999999999999
Q ss_pred HhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCC
Q 048689 106 TTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSS 185 (239)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (239)
.++...|++++..........+....+++.+|+.|+++||.+.+++|+.++++.+.+.+.++++++++.+.+.. .
T Consensus 91 ~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~----~- 165 (514)
T PLN03112 91 LRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAA----Q- 165 (514)
T ss_pred HhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhh----c-
Confidence 88888888776542221111111234455679999999999654489999999999999999999999874321 1
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhcccccC-Cc---hhHHHHHHHHHHHHH
Q 048689 186 RKVVSVEMIHWLEGTVLDIILRIIAGKRYTS-QS---QEVNDWQQQITKFTA 233 (239)
Q Consensus 186 ~~~~~~d~~~~~~~~~~dii~~~~fG~~~~~-~~---~~~~~~~~~~~~~~~ 233 (239)
.+.++|+.+.+.++++|+++.++||.++.. .+ ++..++.+.+..++.
T Consensus 166 -~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (514)
T PLN03112 166 -TGKPVNLREVLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFR 216 (514)
T ss_pred -cCCeeeHHHHHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHH
Confidence 145899999999999999999999998743 11 334456666555543
No 5
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=5.3e-27 Score=194.78 Aligned_cols=164 Identities=23% Similarity=0.375 Sum_probs=132.2
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhh
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELL 124 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~ 124 (239)
.||+|.++|++||++++......+..+.+|.++|| +++++++|+.++|+++||++++++|.+++..|.+|+.......+
T Consensus 58 lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~~~l 137 (543)
T PLN02971 58 LPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQKIL 137 (543)
T ss_pred CCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccchhhc
Confidence 56677789999999887521234778999999999 89999999999999999999999999888889888765444445
Q ss_pred cCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 125 GYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 125 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
+.+..+++++.+|+.|+++||++++..+++..++.+.+.++++++.+++.+.+. .. .+.++|+.+.+.++++|+
T Consensus 138 ~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~--~~~~vd~~~~~~~~t~~v 211 (543)
T PLN02971 138 SNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNM----VK--NSEPVDLRFVTRHYCGNA 211 (543)
T ss_pred cCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh----cc--CCCceehHHHHHHHHHHH
Confidence 544334566667999999999998656777778888888888888888877432 11 144799999999999999
Q ss_pred HHHHHhccccc
Q 048689 205 ILRIIAGKRYT 215 (239)
Q Consensus 205 i~~~~fG~~~~ 215 (239)
+++++||.++.
T Consensus 212 i~~~~fG~~~~ 222 (543)
T PLN02971 212 IKRLMFGTRTF 222 (543)
T ss_pred HHHHHhCCccc
Confidence 99999999863
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=4.9e-27 Score=193.69 Aligned_cols=180 Identities=29% Similarity=0.495 Sum_probs=141.1
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||+..+.. .+++.++.+++++||+++++++|+.++++++|||++++|+.++...|.+++.........
T Consensus 29 ~pPgp~~~P~iG~~~~~~~-~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~ 107 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEK-FNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMS 107 (499)
T ss_pred CCcCCCCCCeeccHHhcCC-CCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhc
Confidence 4556668999999988852 468889999999999999999999999999999999999998877888877543222222
Q ss_pred CCcceEEecCCCchhHHHHHHH-HHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIA-TIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~-~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
.....+.....++.|+++||.+ .+ +|++++++.+.+.+.+++++++++|.+. .+.+.++|+.+.+..+++|+
T Consensus 108 ~~~~~~~~~~~~~~w~~~Rr~l~~~-~f~~~~l~~~~~~i~~~~~~ll~~l~~~------~~~~~~vd~~~~~~~~t~dv 180 (499)
T PLN03234 108 YQGRELGFGQYTAYYREMRKMCMVN-LFSPNRVASFRPVREEECQRMMDKIYKA------ADQSGTVDLSELLLSFTNCV 180 (499)
T ss_pred cCCCccccCCCcHHHHHHHHHHHHH-hcCHHHHHHhHHHHHHHHHHHHHHHHHh------ccCCCeEEHHHHHHHHHHHH
Confidence 1112233445688999999986 56 8999999999999999999999999432 11245899999999999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
+++++||.+++..+.+..++.+.+.+...
T Consensus 181 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 209 (499)
T PLN03234 181 VCRQAFGKRYNEYGTEMKRFIDILYETQA 209 (499)
T ss_pred HHHHHhCCcccccchhHHHHHHHHHHHHH
Confidence 99999999887654455566666555443
No 7
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=3e-27 Score=194.19 Aligned_cols=176 Identities=20% Similarity=0.327 Sum_probs=138.6
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
+| +|.++|++||++.+. .+++..+.+++++||+++++++|+.++|+++||+++++++.++...|.+++.........
T Consensus 31 ~p-gp~~~p~~G~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~ 107 (482)
T PTZ00404 31 LK-GPIPIPILGNLHQLG--NLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGT 107 (482)
T ss_pred CC-CCCCCCeeccHhhhc--ccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeec
Confidence 45 455799999999887 689999999999999999999999999999999999999987766777666443211111
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDII 205 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii 205 (239)
. ..+++. .+|+.|+++|+++++ +|+++.++.+.+.+.+.+.++++.|.+. .+.+.++|+.+.+.++++|++
T Consensus 108 ~-~~~l~~-~~g~~w~~~Rk~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~~~vd~~~~~~~~~~dvi 178 (482)
T PTZ00404 108 F-YHGIVT-SSGEYWKRNREIVGK-AMRKTNLKHIYDLLDDQVDVLIESMKKI------ESSGETFEPRYYLTKFTMSAM 178 (482)
T ss_pred c-CCceec-cChHHHHHHHHHHHH-HHhhhccccHHHHHHHHHHHHHHHHHHH------HhcCCccCHHHHHHHHHHHHH
Confidence 1 234554 469999999999999 8999999999999999999999998432 111457999999999999999
Q ss_pred HHHHhcccccCCc----hhHHHHHHHHHHHHH
Q 048689 206 LRIIAGKRYTSQS----QEVNDWQQQITKFTA 233 (239)
Q Consensus 206 ~~~~fG~~~~~~~----~~~~~~~~~~~~~~~ 233 (239)
++++||.+++..+ ++..++.+.+.+++.
T Consensus 179 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (482)
T PTZ00404 179 FKYIFNEDISFDEDIHNGKLAELMGPMEQVFK 210 (482)
T ss_pred HHHHhccccccccccchhHHHHHHHHHHHHHH
Confidence 9999999876422 223456666655554
No 8
>PLN02966 cytochrome P450 83A1
Probab=99.95 E-value=6.2e-27 Score=192.99 Aligned_cols=179 Identities=28% Similarity=0.487 Sum_probs=141.2
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+.. .+++..+.+|+++||++|++++|+.++++++||+++++++.++...|.+++.........
T Consensus 30 ~ppgp~~~p~~G~l~~l~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~~~ 108 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQK-LNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFIS 108 (502)
T ss_pred CCcCCCCCCeeccHHhcCC-CChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccceeec
Confidence 4666668999999988752 578999999999999999999999999999999999999987777777665432222222
Q ss_pred CCcceEEecCCCchhHHHHHH-HHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKI-ATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~-~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
.+..++.+..+|+.|+++|++ +.+ +|++.+++.+.+.+.+++.++++.|.+. ...++++|+.+.+..+++|+
T Consensus 109 ~~~~~~~~~~~g~~w~~~R~~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~~~vdl~~~~~~~t~dv 181 (502)
T PLN02966 109 YGRRDMALNHYTPYYREIRKMGMNH-LFSPTRVATFKHVREEEARRMMDKINKA------ADKSEVVDISELMLTFTNSV 181 (502)
T ss_pred cCcceeeeCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCCceeHHHHHHHHHHHH
Confidence 222234455569999999999 666 9999999999999999999999999432 11245799999999999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
++.++||.+++..+++..++.+.+....
T Consensus 182 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 209 (502)
T PLN02966 182 VCRQAFGKKYNEDGEEMKRFIKILYGTQ 209 (502)
T ss_pred HHHHHhCCccCccchHHHHHHHHHHHHH
Confidence 9999999988764455555666555544
No 9
>PLN02183 ferulate 5-hydroxylase
Probab=99.95 E-value=1.6e-26 Score=191.03 Aligned_cols=172 Identities=28% Similarity=0.509 Sum_probs=133.0
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++|++..+. ...+..+.+|+++||++|++++|+.++|+++||+++++++.+++..|++++.........
T Consensus 37 ~ppgp~~~Pl~G~l~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~ 114 (516)
T PLN02183 37 YPPGPKGLPIIGNMLMMD--QLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYLT 114 (516)
T ss_pred CCcCCCCCCeeccHHhcC--CcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhccc
Confidence 555677899999998875 556788999999999999999999999999999999999998777788776543222222
Q ss_pred CCcceEEecCCCchhHHHHHHH-HHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIA-TIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~-~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
.+..+.+++.+|+.|+++|+++ .+ +|+...++.+.+.+ +++..+++.+. +.. ++++|+.+.+.++++|+
T Consensus 115 ~~~~~~l~~~~g~~w~~~Rr~~~~~-~f~~~~l~~~~~~~-~~~~~~~~~l~------~~~--~~~v~~~~~~~~~~~~v 184 (516)
T PLN02183 115 YDRADMAFAHYGPFWRQMRKLCVMK-LFSRKRAESWASVR-DEVDSMVRSVS------SNI--GKPVNIGELIFTLTRNI 184 (516)
T ss_pred cCCCceEeCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHH-HHHHHHHHHHH------hcC--CCcEeHHHHHHHHHHHH
Confidence 2222345666799999999995 66 89999999988864 67888888883 222 45899999999999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
+++++||.+.+..+. ++.+.+..+.
T Consensus 185 i~~~~fG~~~~~~~~---~~~~~~~~~~ 209 (516)
T PLN02183 185 TYRAAFGSSSNEGQD---EFIKILQEFS 209 (516)
T ss_pred HHhHhhcCcccchHH---HHHHHHHHHH
Confidence 999999987654322 3444444443
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.95 E-value=4.8e-26 Score=188.38 Aligned_cols=164 Identities=21% Similarity=0.404 Sum_probs=132.6
Q ss_pred CCCCCccccceeeccccC-CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhh
Q 048689 46 APEAGGAWPLIGHLHILR-GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELL 124 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~-~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~ 124 (239)
+||+|+++|++||++.+. ...+++..+.+|+++||++|++++|+.++++++||+++++++.++...|++++.......+
T Consensus 36 lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~~~~ 115 (519)
T PLN00168 36 LPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASSRLL 115 (519)
T ss_pred CCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccchhhh
Confidence 566666899999998664 2246889999999999999999999999999999999999999888888888765443444
Q ss_pred cCCcceEEecCCCchhHHHHH-HHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 125 GYNFLVIGFAPYGNYWRQSRK-IATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 125 ~~~~~~~~~~~~g~~w~~~Rk-~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
+.+...+.+..+|+.|+++|| ++++ +|++++++.+.+.+.++++.+++.|.+. ...+..+|+.+.+..++++
T Consensus 116 ~~~~~~~~~~~~G~~Wk~~Rr~~~~~-~fs~~~l~~~~~~~~~~~~~l~~~l~~~------~~~~~~v~~~~~~~~~~~~ 188 (519)
T PLN00168 116 GESDNTITRSSYGPVWRLLRRNLVAE-TLHPSRVRLFAPARAWVRRVLVDKLRRE------AEDAAAPRVVETFQYAMFC 188 (519)
T ss_pred ccCCCceeCCCCCHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCcCHHHHHHHHHHH
Confidence 433222333356999999987 6777 9999999999999999999999999432 1113468999999999999
Q ss_pred HHHHHHhcccccC
Q 048689 204 IILRIIAGKRYTS 216 (239)
Q Consensus 204 ii~~~~fG~~~~~ 216 (239)
+++.++||.+++.
T Consensus 189 ii~~~~fG~~~~~ 201 (519)
T PLN00168 189 LLVLMCFGERLDE 201 (519)
T ss_pred HHHHHHcCCCcCh
Confidence 9999999998764
No 11
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.95 E-value=8.7e-26 Score=186.43 Aligned_cols=164 Identities=26% Similarity=0.453 Sum_probs=132.0
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.+.|++|+++.+.. ...+..+.+|+++||+++++++|+.++|+++||+.+++++.+++..|.+++.......+.
T Consensus 31 ~pPgp~~~p~~g~l~~~~~-~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~ 109 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGD-DLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFT 109 (503)
T ss_pred CCcCCCCCCeeeeHHhcCC-CchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhc
Confidence 4556668999999988762 336789999999999999999999999999999999999987777787776443323332
Q ss_pred CCcceEEecCCCchhHHHHHHHH-HhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIAT-IELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~-~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
+.+.+.+++.+|+.|+++||.+. + +|++..++.+.+.+.++++++++++.+.. ... +..+|+.+.++.+++|+
T Consensus 110 g~~~~~l~~~~g~~w~~~Rk~~~~~-~f~~~~l~~~~~~i~~~v~~lv~~l~~~~---~~~--~~~v~~~~~~~~~~~dv 183 (503)
T PLN02394 110 GKGQDMVFTVYGDHWRKMRRIMTVP-FFTNKVVQQYRYGWEEEADLVVEDVRANP---EAA--TEGVVIRRRLQLMMYNI 183 (503)
T ss_pred cCCCceeecCCCHHHHHHHHHHHHH-hcChHHHHHhhHHHHHHHHHHHHHHHHhh---hcc--CCcEecHHHHHHHHHHH
Confidence 22224555667999999999997 6 89999999999999999999999985421 111 34689999999999999
Q ss_pred HHHHHhcccccC
Q 048689 205 ILRIIAGKRYTS 216 (239)
Q Consensus 205 i~~~~fG~~~~~ 216 (239)
+++++||.+++.
T Consensus 184 i~~~~fG~~~~~ 195 (503)
T PLN02394 184 MYRMMFDRRFES 195 (503)
T ss_pred HHHHHhCCCccc
Confidence 999999998865
No 12
>PLN02500 cytochrome P450 90B1
Probab=99.94 E-value=2e-25 Score=183.68 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=123.7
Q ss_pred CCCCCCccccceeeccccC---CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhh
Q 048689 45 QAPEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMAT 121 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~ 121 (239)
..||+|+++|++||++.+. ..+.++.++.+++++||+++++++|+.++|+++||+++++++.+++..|.++......
T Consensus 38 ~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~~~ 117 (490)
T PLN02500 38 NLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRSIG 117 (490)
T ss_pred CCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchHHH
Confidence 3566777899999986542 1246788899999999999999999999999999999999998777777655433333
Q ss_pred hhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHH-hHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 122 ELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEK-LKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 122 ~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
..++. .+++++ +|+.|+++||++++ .|++.+++. +.+.+.+.+..+++.| .. +..+|+.+.+.++
T Consensus 118 ~~~g~--~~~~~~-~g~~wr~~Rk~~~~-~f~~~~l~~~~~~~~~~~~~~~~~~~------~~----~~~vd~~~~~~~~ 183 (490)
T PLN02500 118 GILGK--WSMLVL-VGDMHRDMRSISLN-FLSHARLRTHLLKEVERHTLLVLDSW------KE----NSTFSAQDEAKKF 183 (490)
T ss_pred HHhCc--cccccc-CCHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHh------CC----CCCEEehHHHHHH
Confidence 33442 245555 59999999999998 899999987 4677777777777766 32 2368999999999
Q ss_pred HHHHHHHHHhccccc
Q 048689 201 VLDIILRIIAGKRYT 215 (239)
Q Consensus 201 ~~dii~~~~fG~~~~ 215 (239)
++|++++++||.+.+
T Consensus 184 ~~~vi~~~~fg~~~~ 198 (490)
T PLN02500 184 TFNLMAKHIMSMDPG 198 (490)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999998754
No 13
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.7e-25 Score=175.57 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=129.7
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCC--Cchhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRP--KTMATE 122 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~--~~~~~~ 122 (239)
.+|+++ +.|++||+..+...+.+.....+...++||++.++.+.++.++|.|||+|++|+.++.++|.+|. ......
T Consensus 32 Gi~~~~-p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~ 110 (499)
T KOG0158|consen 32 GIPGPK-PLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPE 110 (499)
T ss_pred CCCCCC-CCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCC
Confidence 377665 47999999988633333444444444459999999999999999999999999999999998854 221111
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
+......++..+|+.||++|..++| .|++.+++.|.|.+++.+.++++.+.++. .. +..+++.+.+.++|.
T Consensus 111 --~~l~~~~Lf~~~g~~WK~lR~~lsP-~Fts~kmk~m~~t~~~~~~~l~~~l~~~~----~~--~~~~~~~dl~~~yT~ 181 (499)
T KOG0158|consen 111 --DPLSALNLFFLRGERWKRLRTKLSP-TFTSGKLKKMFPTMEEVGDELVRHLRRKS----EG--GQEGEIKDLCARYTT 181 (499)
T ss_pred --CcccccCchhccCchHHHHHHhhcc-ccchhhHHHHHHHHHHHHHHHHHHHHHhh----cc--cCCccHHHHHHHHHH
Confidence 0111123444569999999999999 99999999999999999999999995431 11 146788888889999
Q ss_pred HHHHHHHhcccccCCchhHHHHHH
Q 048689 203 DIILRIIAGKRYTSQSQEVNDWQQ 226 (239)
Q Consensus 203 dii~~~~fG~~~~~~~~~~~~~~~ 226 (239)
|||++++||.+.++..+...++..
T Consensus 182 DVI~~~AfG~~~~s~~d~~~~F~~ 205 (499)
T KOG0158|consen 182 DVIGSCAFGLDANSLRDPKAEFRR 205 (499)
T ss_pred HHHhHhhcccchhhhcCchHHHHH
Confidence 999999999998874433334443
No 14
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.93 E-value=6.2e-25 Score=179.39 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=124.2
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.|++|.++|++||+.++.. ++++.++.+++++||+++++++++.++|+++||+++++++.++...|............+
T Consensus 36 ~Ppgp~~~P~iG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g 114 (463)
T PLN02196 36 LPPGTMGWPYVGETFQLYS-QDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFPASKERMLG 114 (463)
T ss_pred CCCCCCCCCccchHHHHHh-cCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCchHHHHHcC
Confidence 4555567999999887642 689999999999999999999999999999999999999987766663221111112222
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDII 205 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii 205 (239)
..+++.+ +|+.|+++||++++ .|++++++.+.+.+.+.+.++++.| . +.++|+.++++.+++|++
T Consensus 115 --~~~l~~~-~g~~w~~~Rk~l~~-~f~~~~l~~~~~~i~~~~~~~~~~~------~-----~~~v~~~~~~~~~~~~v~ 179 (463)
T PLN02196 115 --KQAIFFH-QGDYHAKLRKLVLR-AFMPDAIRNMVPDIESIAQESLNSW------E-----GTQINTYQEMKTYTFNVA 179 (463)
T ss_pred --ccccccc-CcHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHcC------C-----CCeEEeHHHHHHHHHHHH
Confidence 2234444 69999999999999 8999999999999999999988877 3 236899999999999999
Q ss_pred HHHHhccccc
Q 048689 206 LRIIAGKRYT 215 (239)
Q Consensus 206 ~~~~fG~~~~ 215 (239)
+.++||.+..
T Consensus 180 ~~~~fG~~~~ 189 (463)
T PLN02196 180 LLSIFGKDEV 189 (463)
T ss_pred HHHHcCCCCc
Confidence 9999998753
No 15
>PLN02655 ent-kaurene oxidase
Probab=99.93 E-value=1.3e-24 Score=177.74 Aligned_cols=165 Identities=21% Similarity=0.346 Sum_probs=134.1
Q ss_pred CCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcC
Q 048689 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGY 126 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~ 126 (239)
||+|+++|++||++++.. .+++..+.+|+++||++|++++|+.++++|+||+++++|+.++...|.+++.......++.
T Consensus 1 ppgp~~lP~iG~l~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~ 79 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKE-KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTR 79 (466)
T ss_pred CcCCCCCCccccHHHcCC-CchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhc
Confidence 345567999999998863 4689999999999999999999999999999999999999988888887765433333333
Q ss_pred CcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHH
Q 048689 127 NFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIIL 206 (239)
Q Consensus 127 ~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~ 206 (239)
+...+..+.+|+.|+++|+.+.+++|+...++.+.+.+.+.++.+++.+.+.+.+. .++++|+.+.+.++++|+++
T Consensus 80 ~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~vd~~~~~~~~t~dvi~ 155 (466)
T PLN02655 80 DKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDD----PHSPVNFRDVFENELFGLSL 155 (466)
T ss_pred CCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhcccc----CCCceeHHHHHHHHHHHHHH
Confidence 33335555569999999987776588888899999999999999999986543221 14579999999999999999
Q ss_pred HHHhcccccC
Q 048689 207 RIIAGKRYTS 216 (239)
Q Consensus 207 ~~~fG~~~~~ 216 (239)
.++||.+++.
T Consensus 156 ~~~fG~~~~~ 165 (466)
T PLN02655 156 IQALGEDVES 165 (466)
T ss_pred HHHhcccccc
Confidence 9999998764
No 16
>PLN03018 homomethionine N-hydroxylase
Probab=99.93 E-value=3.9e-24 Score=176.83 Aligned_cols=165 Identities=23% Similarity=0.393 Sum_probs=124.5
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHh-CCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKY-GPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATEL 123 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~ 123 (239)
.+||+|.++|++||++++...+....++.++.++| |+|+++++|+.++|+|+||+++++++.+++..|.+|+.......
T Consensus 40 ~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~ 119 (534)
T PLN03018 40 QLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMET 119 (534)
T ss_pred CCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhh
Confidence 35667778999999998742111123455666665 79999999999999999999999999988888988875544444
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
++.+..+++++.+|+.|+++|+++++.+++....+.+.+.++.++.++++.+.+.+ .. +.++|+.+.+.++++|
T Consensus 120 l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~--~~~vd~~~~~~~~t~~ 193 (534)
T PLN03018 120 IGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMY----QR--SETVDVRELSRVYGYA 193 (534)
T ss_pred hccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc----cc--CCceeHHHHHHHHHHH
Confidence 44433357777679999999999999334444445555566667889999985432 11 3479999999999999
Q ss_pred HHHHHHhccccc
Q 048689 204 IILRIIAGKRYT 215 (239)
Q Consensus 204 ii~~~~fG~~~~ 215 (239)
++++++||.++.
T Consensus 194 vi~~~~fG~~~~ 205 (534)
T PLN03018 194 VTMRMLFGRRHV 205 (534)
T ss_pred HHHHHHhCCccc
Confidence 999999999874
No 17
>PLN02290 cytokinin trans-hydroxylase
Probab=99.93 E-value=1.6e-24 Score=179.47 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=123.8
Q ss_pred CCCCccccceeeccccCC-----------------CCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCC
Q 048689 47 PEAGGAWPLIGHLHILRG-----------------SEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTND 109 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~-----------------~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~ 109 (239)
||+|+++|++||++++.. ..+....+.+|+++||+++++++|+.++|+++||+++++++.++.
T Consensus 44 ~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~ 123 (516)
T PLN02290 44 VRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYN 123 (516)
T ss_pred CCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCC
Confidence 445668999999987641 022334568899999999999999999999999999999998653
Q ss_pred cccCCCCCch---hhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 048689 110 KAFAGRPKTM---ATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSR 186 (239)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (239)
.+..++... .....+ .+++++ +|+.|+++||++++ .|++.+++.+.+.+.+++.++++.|.+.. . .
T Consensus 124 -~~~~r~~~~~~~~~~~~g---~~l~~~-~g~~Wk~~Rk~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~~~---~--~ 192 (516)
T PLN02290 124 -TVTGKSWLQQQGTKHFIG---RGLLMA-NGADWYHQRHIAAP-AFMGDRLKGYAGHMVECTKQMLQSLQKAV---E--S 192 (516)
T ss_pred -CCCCCcchhhhHHHHHhc---CCcccc-CchHHHHHHhhccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHH---h--c
Confidence 344454321 112233 345554 59999999999998 89999999999999999999999995321 1 1
Q ss_pred CccccchHHHHHHHHHHHHHHHHhcccccC
Q 048689 187 KVVSVEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 187 ~~~~~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
++.++|+.+.+..+++|++++++||.+++.
T Consensus 193 ~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 222 (516)
T PLN02290 193 GQTEVEIGEYMTRLTADIISRTEFDSSYEK 222 (516)
T ss_pred CCceEEhHHHHHHHHHHHHHHHHcCCcccc
Confidence 134799999999999999999999998764
No 18
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.92 E-value=1.4e-23 Score=173.04 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=124.2
Q ss_pred CCCCCCccccceeeccccC---CCCchHHHHHHHHHHhCC--eeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch
Q 048689 45 QAPEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGP--IFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM 119 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~--i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~ 119 (239)
+.||+|+++|++|+++++. ..++++.++.+++++||+ ++++++++.+.++++||+++++++.++ ..|.++....
T Consensus 42 ~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~~ 120 (490)
T PLN02302 42 PLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPES 120 (490)
T ss_pred CCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCchh
Confidence 3566777899999998763 125789999999999997 789999999999999999999999754 4555443332
Q ss_pred hhhhhcCCcceEEecCCCchhHHHHHHHHHhhc-ChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH
Q 048689 120 ATELLGYNFLVIGFAPYGNYWRQSRKIATIELL-SNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE 198 (239)
Q Consensus 120 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~ 198 (239)
....++. +.+...+|+.|+++||.+.+ .| +++.++.+.+.+.+.+.++++.+ ... ..+|+.+.+.
T Consensus 121 ~~~~~g~---~~~~~~~g~~w~~~R~~~~~-~f~~~~~l~~~~~~i~~~v~~~~~~~------~~~----~~v~~~~~~~ 186 (490)
T PLN02302 121 TVELIGR---KSFVGITGEEHKRLRRLTAA-PVNGPEALSTYIPYIEENVKSCLEKW------SKM----GEIEFLTELR 186 (490)
T ss_pred HHHHhcc---ccccccCcHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHh------cCC----CCEehHHHHH
Confidence 2233332 22334469999999999999 78 57889999999999999999988 322 2689999999
Q ss_pred HHHHHHHHHHHhccccc
Q 048689 199 GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 199 ~~~~dii~~~~fG~~~~ 215 (239)
.+++|++++++||.+.+
T Consensus 187 ~~~~~vi~~~~~G~~~~ 203 (490)
T PLN02302 187 KLTFKIIMYIFLSSESE 203 (490)
T ss_pred HHHHHHHHHHHcCCCCh
Confidence 99999999999998764
No 19
>PLN02774 brassinosteroid-6-oxidase
Probab=99.92 E-value=4.3e-24 Score=174.53 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=124.4
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. +++..++.+++++||+++++++|+.++++++||+++++++.++...|..+........++
T Consensus 32 ~ppgp~~~P~~G~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~lg 109 (463)
T PLN02774 32 LPPGTMGWPLFGETTEFL--KQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDILG 109 (463)
T ss_pred CCCCCCCCCchhhHHHHH--HhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHhC
Confidence 555666799999998876 567789999999999999999999999999999999999987776664443333334444
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHHHH-hHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEK-LKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
. .+++. .+|+.|+++|+++.+ +|++..++. +.+.+.+.+.+++++| .. ++++|+.+.+..+++++
T Consensus 110 ~--~~~~~-~~g~~w~~~R~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~v~~~~~~~~~~~~~ 175 (463)
T PLN02774 110 T--CNIAA-VHGSTHRYMRGSLLS-LISPTMIRDHLLPKIDEFMRSHLSGW------DG----LKTIDIQEKTKEMALLS 175 (463)
T ss_pred c--cchhh-cCCHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhh------CC----CCCEEeeHHHHHHHHHH
Confidence 2 23444 469999999999998 899999986 7888888888888777 32 23789999999999999
Q ss_pred HHHHHhccccc
Q 048689 205 ILRIIAGKRYT 215 (239)
Q Consensus 205 i~~~~fG~~~~ 215 (239)
++.++||.+..
T Consensus 176 ~~~~~~g~~~~ 186 (463)
T PLN02774 176 ALKQIAGTLSK 186 (463)
T ss_pred HHHHHcCCCCh
Confidence 99999997643
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.91 E-value=2.6e-24 Score=175.60 Aligned_cols=179 Identities=27% Similarity=0.471 Sum_probs=140.4
Q ss_pred CCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhh--h
Q 048689 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATEL--L 124 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~--~ 124 (239)
||+|.++|++||++.+...++++..+.+++++||+||++++++.++++|+||+++++|+.+++..++.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 56677899999999887447899999999999999999999999999999999999999877767766544322221 1
Q ss_pred cCCcceEEecCCCchhHHHHHHHHHhhcChh-HHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 125 GYNFLVIGFAPYGNYWRQSRKIATIELLSNR-RLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 125 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.....++++. +|+.|+.+|+.+.+ .|+.. .+ .+.+.+.+.++++++.|.+. .+.+.++|+.++++.+++|
T Consensus 81 ~~~~~~l~~~-~~~~~~~~R~~~~~-~~~~~~~~-~~~~~i~~~~~~l~~~l~~~------~~~~~~vd~~~~~~~~~~d 151 (463)
T PF00067_consen 81 PFGGKGLFFS-DGERWRRQRRLLAP-AFSSKKIL-KLEPLIDEEAEELIDQLRKK------AGSSGPVDLFDWLRRFALD 151 (463)
T ss_dssp HHTTTSSTTS-SHHHHHHHHHHHHH-HHSHHHHH-HHHHHHHHHHHHHHHHHHHT------TTSESEEEHHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccc-cccccccc-cccccccccccccccccccc------ccccceeeeeccccccccc
Confidence 1122345555 48999999999999 78888 66 99999999999999999543 2223379999999999999
Q ss_pred HHHHHHhcccccC-CchhHHHHHHHHHHHHHh
Q 048689 204 IILRIIAGKRYTS-QSQEVNDWQQQITKFTAL 234 (239)
Q Consensus 204 ii~~~~fG~~~~~-~~~~~~~~~~~~~~~~~~ 234 (239)
++++++||.+++. .++...++.+.+.++...
T Consensus 152 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~ 183 (463)
T PF00067_consen 152 VIGRVLFGKDFGSLDDEDFEEFLEAFDELFEL 183 (463)
T ss_dssp HHHHHHHSSHHHGTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeeeccccccccccccccccccc
Confidence 9999999999874 444445566666665443
No 21
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.91 E-value=6.3e-23 Score=168.19 Aligned_cols=175 Identities=23% Similarity=0.361 Sum_probs=136.9
Q ss_pred CCCCCccccceeeccccCCC-CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc--hhhh
Q 048689 46 APEAGGAWPLIGHLHILRGS-EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT--MATE 122 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~~~~ 122 (239)
.|++|.++|++|++..+... .+...++.++..+||++++.|+|+.+.++++||+.+++|+.++...+.+.+.. ...+
T Consensus 36 ~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~ 115 (497)
T KOG0157|consen 36 LPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKP 115 (497)
T ss_pred cCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHH
Confidence 56677789999999988632 46788899999999999999999999999999999999996555555444433 4446
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
.+| .|++++. |+.|+++||++++ +|+.+.++.+.+.+.+.+..+...+.. ... ++.+|+.+.+.++|+
T Consensus 116 ~lG---~gll~~~-g~~W~~~Rk~~~~-~f~~~~L~~~~~~~~~~~~~~~~~~~~------~~~-~~~vd~~~~~~~~tl 183 (497)
T KOG0157|consen 116 WLG---DGLLFSD-GEKWHKHRKLLTP-AFHFEILKSFVPVFIESSLILLLLLEL------AAS-GEEVDLQDLLKRLTL 183 (497)
T ss_pred Hhc---CccccCC-chHHHHHHhhccH-hhhHHHHHHHHHHHHHHHHHHHHHHHH------hhc-CCeEcHHHHHHHHHH
Confidence 666 3577776 9999999999999 999999999999999999998888732 111 223999999999999
Q ss_pred HHHHHHHhcccc-cCCchhHHHHHHHHHHHH
Q 048689 203 DIILRIIAGKRY-TSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 203 dii~~~~fG~~~-~~~~~~~~~~~~~~~~~~ 232 (239)
|++++++||... +.+.++..++.+++.+..
T Consensus 184 d~i~~~~~G~~~~~~~~~~~~~~~~a~~~~~ 214 (497)
T KOG0157|consen 184 DIICKTAMGPESLDAEGPELFEYVQAFDDLT 214 (497)
T ss_pred HHHHHHhcCCccccccCCcccHHHHHHHHHH
Confidence 999999999332 224444445556655443
No 22
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.90 E-value=2.3e-22 Score=163.95 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=121.7
Q ss_pred CCCCCCccccceeeccccCC---CCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhh
Q 048689 45 QAPEAGGAWPLIGHLHILRG---SEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMAT 121 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~---~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~ 121 (239)
.+||+|.++|++||++.+.. ..+++.++.+++++||+||++++|+.++|+++||++++++|.+++..|..+......
T Consensus 7 ~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~~~~~ 86 (452)
T PLN03141 7 RLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYPKSLT 86 (452)
T ss_pred CCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCchhHH
Confidence 46777778999999988741 247899999999999999999999999999999999999999887777765433333
Q ss_pred hhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHh-HHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 122 ELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKL-KHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 122 ~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
..+|. .+++.. +|+.|+++|+++++ .|+...++.+ .+.+.+.+.++++.+ .. +..+|+.+.+..+
T Consensus 87 ~l~g~--~~~~~~-~g~~wr~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~ 152 (452)
T PLN03141 87 ELMGK--SSILLI-NGSLQRRVHGLIGA-FLKSPHLKAQITRDMERYVSESLDSW------RD----DPPVLVQDETKKI 152 (452)
T ss_pred HHhCc--cccccc-CcHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhc------cC----CCCEEhHHHHHHH
Confidence 44442 235554 59999999999998 8988877653 445555555555444 21 3478999999999
Q ss_pred HHHHHHHHHhccccc
Q 048689 201 VLDIILRIIAGKRYT 215 (239)
Q Consensus 201 ~~dii~~~~fG~~~~ 215 (239)
+++++++++||.+.+
T Consensus 153 ~~~vi~~~~~G~~~~ 167 (452)
T PLN03141 153 AFEVLVKALISLEPG 167 (452)
T ss_pred HHHHHHHHHcCCCch
Confidence 999999999997653
No 23
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.89 E-value=4.5e-22 Score=162.49 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=116.7
Q ss_pred CCCCCccccceeeccccC---CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhh
Q 048689 46 APEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATE 122 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 122 (239)
+||+|.++|++||++++. ...+++.++.+++++||+++++++++.+.++++||+++++++.++...|.++.......
T Consensus 31 lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~ 110 (472)
T PLN02987 31 LPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGSISN 110 (472)
T ss_pred CcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHHHHH
Confidence 677788899999998863 12568899999999999999999999999999999999999988777776654444445
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
.+|. .+++++ +|+.|+++|+++.+ .++...++.+. .+++.++++...+.| . .++|+.+.+.++++
T Consensus 111 ~lg~--~~l~~~-~g~~wr~~R~~~~~-f~~~~~~~~~~---~~~~~~~~~~~~~~~--~------~~v~~~~~~~~~t~ 175 (472)
T PLN02987 111 LLGK--HSLLLM-KGNLHKKMHSLTMS-FANSSIIKDHL---LLDIDRLIRFNLDSW--S------SRVLLMEEAKKITF 175 (472)
T ss_pred HhCc--cccccc-CcHHHHHHHHHHHH-hcChHHHHHHH---HHHHHHHHHHHHHhh--c------cceehHHHHHHHHH
Confidence 5542 346666 59999999999875 55555665543 223444444332222 1 26899999999999
Q ss_pred HHHHHHHhccccc
Q 048689 203 DIILRIIAGKRYT 215 (239)
Q Consensus 203 dii~~~~fG~~~~ 215 (239)
+++++++||.+.+
T Consensus 176 ~vi~~~~fg~~~~ 188 (472)
T PLN02987 176 ELTVKQLMSFDPG 188 (472)
T ss_pred HHHHHHHcCCCCh
Confidence 9999999998654
No 24
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.88 E-value=2e-21 Score=160.93 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=117.6
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHh---CCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch-hh
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKY---GPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-AT 121 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~y---G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~ 121 (239)
+| +|.++|++||++.+. .+ +..+.+|.++| |+++++++|+.+.++++||+++++|+.++...|.++.... ..
T Consensus 32 ~p-gp~~~p~~G~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 107 (516)
T PLN03195 32 RK-GPKSWPIIGAALEQL--KN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM 107 (516)
T ss_pred cC-CCCCCCeecchHHHH--hc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence 45 455799999987654 22 34566777777 8999999999999999999999999986555565543321 11
Q ss_pred -hhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHH-HHHHHHHHHHHHhhcccCCCCCCccccchHHHHHH
Q 048689 122 -ELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVR-ESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEG 199 (239)
Q Consensus 122 -~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 199 (239)
...+ .+++. .+|+.|+++||++++ +|+.++++.+.+.+ .+.+..+++.+.+.. .. +.++|+.+++..
T Consensus 108 ~~~~g---~~l~~-~~g~~w~~~Rr~l~~-~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~----~~--~~~vd~~~~~~~ 176 (516)
T PLN03195 108 EVLLG---DGIFN-VDGELWRKQRKTASF-EFASKNLRDFSTVVFREYSLKLSSILSQAS----FA--NQVVDMQDLFMR 176 (516)
T ss_pred HHHhc---Ceeec-cCcHHHHHHHHhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc--CCeEcHHHHHHH
Confidence 1222 34554 569999999999998 89999999999976 555666666664321 11 457999999999
Q ss_pred HHHHHHHHHHhcccccC
Q 048689 200 TVLDIILRIIAGKRYTS 216 (239)
Q Consensus 200 ~~~dii~~~~fG~~~~~ 216 (239)
+++|++++++||.+++.
T Consensus 177 ~~~dvi~~~~fG~~~~~ 193 (516)
T PLN03195 177 MTLDSICKVGFGVEIGT 193 (516)
T ss_pred HHHHHHHHHHhCCCccc
Confidence 99999999999998864
No 25
>PLN02936 epsilon-ring hydroxylase
Probab=99.88 E-value=1.1e-21 Score=161.38 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=129.4
Q ss_pred CCCCCccccceeeccccC---CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhh
Q 048689 46 APEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATE 122 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 122 (239)
.-++..++|++|+.+... ..+.++..+.+|+++|||++++++|+.++++++|||++++|+++.+..|.++.......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~ 92 (489)
T PLN02936 13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE 92 (489)
T ss_pred cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence 566778999999876542 23778999999999999999999999999999999999999987667777665432222
Q ss_pred -hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHH-HHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 123 -LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKH-VRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 123 -~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
..+ .+++++ +|+.|+++||++++ .|+..+++.+.+ .+.++++++++.+.+. .+++.++|+.++++++
T Consensus 93 ~~~~---~~i~~~-~g~~wk~~Rk~l~~-~f~~~~l~~~~~~~~~~~~~~l~~~l~~~------~~~g~~vd~~~~~~~~ 161 (489)
T PLN02936 93 FLFG---SGFAIA-EGELWTARRRAVVP-SLHRRYLSVMVDRVFCKCAERLVEKLEPV------ALSGEAVNMEAKFSQL 161 (489)
T ss_pred HHhc---CccccC-CchHHHHHHHhhcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCceeHHHHHHHH
Confidence 222 345554 59999999999998 899989988765 7888899999998543 1124589999999999
Q ss_pred HHHHHHHHHhcccccC
Q 048689 201 VLDIILRIIAGKRYTS 216 (239)
Q Consensus 201 ~~dii~~~~fG~~~~~ 216 (239)
++|+++.++||.+++.
T Consensus 162 ~~dvi~~~~fG~~~~~ 177 (489)
T PLN02936 162 TLDVIGLSVFNYNFDS 177 (489)
T ss_pred HHHHHHHHHcCCCccc
Confidence 9999999999999875
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.88 E-value=2.2e-21 Score=162.69 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=121.4
Q ss_pred eeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecC
Q 048689 56 IGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAP 135 (239)
Q Consensus 56 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (239)
+||+..+. .+..+..+.+++++||||+++++|+.++++|+||+.+++|+.++...|.++.......... + .+++. .
T Consensus 142 ~G~l~~i~-~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~-g-~~l~~-~ 217 (633)
T PLN02738 142 KGSISAVR-GEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVM-G-KGLIP-A 217 (633)
T ss_pred cCcHHHhc-CchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhcc-C-Cceec-C
Confidence 45555554 3678899999999999999999999899999999999999987666677664332222121 1 24554 4
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~ 215 (239)
+|+.|+++|+.+++ +|+...++.+.+.+.++++++++++.+. ...++++|+.+.+..+++|+|+.++||.+++
T Consensus 218 dge~wr~rRr~l~p-~Fs~~~v~~l~~~i~~~v~~L~~~L~~~------~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~ 290 (633)
T PLN02738 218 DGEIWRVRRRAIVP-ALHQKYVAAMISLFGQASDRLCQKLDAA------ASDGEDVEMESLFSRLTLDIIGKAVFNYDFD 290 (633)
T ss_pred CcHHHHHHHHhccH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCcEeHHHHHHHHHHHHHHHHHhCCCcc
Confidence 69999999999999 9999999999999999999999999432 1225689999999999999999999999887
Q ss_pred C
Q 048689 216 S 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 291 ~ 291 (633)
T PLN02738 291 S 291 (633)
T ss_pred c
Confidence 4
No 27
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.87 E-value=8.2e-21 Score=156.38 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=117.5
Q ss_pred CCCCCCccccceeeccccC-CCCchHHHHHHHHHHhCCeeE---EEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc-h
Q 048689 45 QAPEAGGAWPLIGHLHILR-GSEPAHRVLGNMADKYGPIFT---MKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT-M 119 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~-~~~~~~~~~~~~~~~yG~i~~---~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~ 119 (239)
..|+|+ ++|++||+..+. .....+..+.+...+||..++ .++|+.++++++||+++++||.++...|.++... .
T Consensus 32 ~~p~p~-~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~ 110 (500)
T PLN02169 32 GQPILK-NWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK 110 (500)
T ss_pred CCCCCC-CCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence 367654 799999997764 112344555555556886655 5778899999999999999998877777776533 2
Q ss_pred hhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHh--HHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH
Q 048689 120 ATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKL--KHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL 197 (239)
Q Consensus 120 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 197 (239)
....+| .+++++ +|+.|+++||+++| +|+...++.+ .+.+.+.+..+++.+.+. .. .+.++|+.+.+
T Consensus 111 ~~~~~g---~gl~~~-~g~~Wr~~Rk~l~p-~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~--~~~~vd~~~~~ 179 (500)
T PLN02169 111 IFDVLG---EGILTV-DFELWEDLRKSNHA-LFHNQDFIELSLSSNKSKLKEGLVPFLDNA----AH--ENIIIDLQDVF 179 (500)
T ss_pred HHHhhc---Cccccc-CcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh--cCCeEeHHHHH
Confidence 222233 456666 49999999999998 9999887643 366777777888777432 11 14579999999
Q ss_pred HHHHHHHHHHHHhcccccC
Q 048689 198 EGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 198 ~~~~~dii~~~~fG~~~~~ 216 (239)
.++++|+|++++||.+.+.
T Consensus 180 ~~~t~dvi~~~~fG~~~~~ 198 (500)
T PLN02169 180 MRFMFDTSSILMTGYDPMS 198 (500)
T ss_pred HHHHHHHHHhheeCCCccc
Confidence 9999999999999997754
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.1e-19 Score=143.59 Aligned_cols=182 Identities=20% Similarity=0.254 Sum_probs=146.0
Q ss_pred CCccccceeecccc--CCCCchHHHHHHHHHHhCCeeEEE-cCCeeEEEeCCHHHHHHHHHhCCcccCCCC-Cc---hhh
Q 048689 49 AGGAWPLIGHLHIL--RGSEPAHRVLGNMADKYGPIFTMK-LGVKQALVVSNWEIAKECFTTNDKAFAGRP-KT---MAT 121 (239)
Q Consensus 49 ~p~~~p~lG~~~~~--~~~~~~~~~~~~~~~~yG~i~~~~-~~~~~~v~v~~p~~i~~il~~~~~~~~~~~-~~---~~~ 121 (239)
+|..+|++|.++.+ .+..+.|+.....+++|||||+.. +|+...|.+.||++++.+++.++ .+.-|+ .. ...
T Consensus 54 ~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~~~ 132 (519)
T KOG0159|consen 54 GPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWVAY 132 (519)
T ss_pred CCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhhhh
Confidence 45578999998843 234788999999999999999999 88889999999999999997554 456664 11 122
Q ss_pred hhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHH
Q 048689 122 ELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTV 201 (239)
Q Consensus 122 ~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 201 (239)
....++..|++... |+.|++.|..+++..++++.++.|.|.+++.+.++++.+.+.... ..+..+.|+.+.+.+++
T Consensus 133 rd~~~~~~Gl~~~~-G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~---~~~~~~~D~~~~l~~ws 208 (519)
T KOG0159|consen 133 RDFRGGVCGLFLLE-GPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDP---ERGELVPDFAQELYRWS 208 (519)
T ss_pred HHhhccCCCcccCC-CHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcc---cccccchhHHHHHHHHH
Confidence 22333444666664 999999999999988999999999999999999999999776332 22245789999999999
Q ss_pred HHHHHHHHhcccccC----CchhHHHHHHHHHHHHHhc
Q 048689 202 LDIILRIIAGKRYTS----QSQEVNDWQQQITKFTALS 235 (239)
Q Consensus 202 ~dii~~~~fG~~~~~----~~~~~~~~~~~~~~~~~~~ 235 (239)
++.||.++||.+++. .+++.+.+.+++.+++...
T Consensus 209 lEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s 246 (519)
T KOG0159|consen 209 LESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESS 246 (519)
T ss_pred HHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhH
Confidence 999999999999976 3467788999998888654
No 29
>PLN02648 allene oxide synthase
Probab=99.84 E-value=5.5e-21 Score=155.60 Aligned_cols=162 Identities=10% Similarity=0.113 Sum_probs=124.5
Q ss_pred CCCCCccccceeeccccC---CCCchHHHHHHHHHHhCC-eeEEEcCCeeE-------EEeCCHHHHHHHHHh----CCc
Q 048689 46 APEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGP-IFTMKLGVKQA-------LVVSNWEIAKECFTT----NDK 110 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~v~~p~~i~~il~~----~~~ 110 (239)
.||++.++|++|+..++. ...++..++.+.++|||+ ||+++++|.++ |+++|||+++.+|.+ ++.
T Consensus 18 ~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~ 97 (480)
T PLN02648 18 EIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRD 97 (480)
T ss_pred CCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccccc
Confidence 466677899999997543 125668999999999999 99999988655 999999999999964 444
Q ss_pred ccCCCCCchhhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccc
Q 048689 111 AFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVS 190 (239)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (239)
.+........ ..+|.+....+...+|+.|+++|+++.+ +|+ ..++.|.+.|.+.+.++++.|.... .. +.+
T Consensus 98 ~~~~~~~~~~-~l~G~~~~~s~~~~~g~~H~r~Rrll~~-~f~-~~~~~~~~~m~~~~~~~~~~w~~~~----~~--~~~ 168 (480)
T PLN02648 98 VFTGTYMPST-AFTGGYRVLSYLDPSEPKHAKLKSFLFE-LLK-SRHRRFIPEFRAAFAELFDTWEAEL----AK--KGK 168 (480)
T ss_pred cceeeeccCc-cccCCceeeeecCCCCchHHHHHHHHHH-HHH-HhhhhhhhHHHHHHHHHHHHHHHHH----hh--CCC
Confidence 3444333323 3555331113445569999999999999 898 5779999999999999999994321 11 346
Q ss_pred cchHHHHHHHHHHHHHHHHhcccccC
Q 048689 191 VEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 191 ~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
+|+.+.+.++++|++++++||.+.+.
T Consensus 169 vdv~~~~~~lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 169 AEFNDPLDQMAFNFLCKALTGKDPSE 194 (480)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcch
Confidence 99999999999999999999986543
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.78 E-value=3.7e-17 Score=134.73 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=112.7
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc-h-hhhhhcCCcc
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT-M-ATELLGYNFL 129 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~-~~~~~~~~~~ 129 (239)
.++.|+..... .+.+..+..+.++++ .+++++..+. ++++||+.+++++.++...|.+.... . .....| .
T Consensus 49 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g---~ 121 (502)
T PLN02426 49 AYLTASWAKDF--DNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLG---R 121 (502)
T ss_pred CCccHHHHHhc--ccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcC---C
Confidence 46788877655 456777777888876 5777766554 89999999999998776677655432 2 223333 3
Q ss_pred eEEecCCCchhHHHHHHHHHhhcChhHHHHhH--HHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHH
Q 048689 130 VIGFAPYGNYWRQSRKIATIELLSNRRLEKLK--HVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILR 207 (239)
Q Consensus 130 ~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~ 207 (239)
+++.+ +|+.|+++||++++ .|+...++.+. +.+.+.+..+++.+.+.. ..+.+.++|+.++++++++|+|++
T Consensus 122 gi~~~-~g~~wk~~Rk~l~~-~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~vd~~~~~~~~t~dvi~~ 195 (502)
T PLN02426 122 GIFNV-DGDSWRFQRKMASL-ELGSVSIRSYAFEIVASEIESRLLPLLSSAA----DDGEGAVLDLQDVFRRFSFDNICK 195 (502)
T ss_pred ceeec-CcHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCceEcHHHHHHHHHHHHHHH
Confidence 56555 59999999999998 89999998874 667777777887775431 111135799999999999999999
Q ss_pred HHhcccccC
Q 048689 208 IIAGKRYTS 216 (239)
Q Consensus 208 ~~fG~~~~~ 216 (239)
++||.+++.
T Consensus 196 ~~fG~~~~~ 204 (502)
T PLN02426 196 FSFGLDPGC 204 (502)
T ss_pred HHhCCCCcc
Confidence 999998865
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=7.7e-16 Score=119.61 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=123.3
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc--hhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT--MATE 122 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~~~~ 122 (239)
.||-...++|++|++..++ +++..+++++++|||+||++.++|+.+.++.+|+....++..+....+-.... ...+
T Consensus 32 ~PPli~gwiP~lG~a~~fg--k~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~ 109 (486)
T KOG0684|consen 32 EPPLIKGWIPWLGSALAFG--KDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTP 109 (486)
T ss_pred CCcccccCcchhhHHHHhc--cCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhh
Confidence 4777777899999999999 99999999999999999999999999999999999999996543333322211 2333
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHH-HHhhcccCCCCCCccccch-HHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQR-LYKNCISSSSSRKVVSVEM-IHWLEGT 200 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~d~-~~~~~~~ 200 (239)
.+| .++....++....++.+++.. ++....++++.+.|.++..+.++. + .++ | ..|. .+....+
T Consensus 110 vFg---~~v~~d~~~~~~~e~~~~~k~-~L~~~~lk~~~e~m~~el~~~f~~~~------~~s---~-~~d~l~~~~~~i 175 (486)
T KOG0684|consen 110 VFG---KGVVYDVPNHVMMEQKKFFKS-ALGGVALKSLVELMLEELHAYFETSL------GES---G-ETDGLYTFCRLI 175 (486)
T ss_pred hcC---CCccccCCCchHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHHhccc------ccc---c-chhHhhhhhHHH
Confidence 344 346666668888899999998 899999999999999999888777 4 222 3 4444 4444555
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHH
Q 048689 201 VLDIILRIIAGKRYTSQSQEVNDWQQQITKF 231 (239)
Q Consensus 201 ~~dii~~~~fG~~~~~~~~~~~~~~~~~~~~ 231 (239)
.+.+.-.+++|..-...+.+...+...++..
T Consensus 176 i~tAs~~ll~~e~r~~~d~~~a~l~~dLd~~ 206 (486)
T KOG0684|consen 176 IFTASRLLLGGEVRDQLDADVAKLYHDLDQG 206 (486)
T ss_pred hhhhHHHhhhhhhhhhhcchHHHHHHHHhcc
Confidence 5555555555544333344544555555543
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.16 E-value=3.6e-10 Score=91.28 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhCCeeEEEcCCee--EEEeCCHHHHHHHHHhCCcccCCCCCch-----hhhhhcCCcceEEecCCCchh
Q 048689 68 AHRVLGNMADKYGPIFTMKLGVKQ--ALVVSNWEIAKECFTTNDKAFAGRPKTM-----ATELLGYNFLVIGFAPYGNYW 140 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~~~~--~v~v~~p~~i~~il~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~w 140 (239)
+......+.+.||.++.++..+.. .+++++++.+++++.++. .+++..... ....++ .+.++..+|+.|
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ll~~dg~~H 99 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLG---DGSLLTLDGPEH 99 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhcc---ccceeecCCHHH
Confidence 445566778888888888765543 899999999999997543 222222111 122233 222445569999
Q ss_pred HHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhcccccC
Q 048689 141 RQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 141 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
+++||++++ +|+++.++.+.+.+.+.+.++++.+ . . +...++.+.+..+++++|+ .+||.+.++
T Consensus 100 ~r~Rkl~~~-~F~~~~~~~~~~~i~~~~~~~~~~~-~----~-----~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~ 163 (411)
T COG2124 100 TRLRKLLAP-AFTPRALRGYRPLIREIADRLLDDL-W----Q-----GGADLVLDFAAELTLRVIA-ELLGVPLED 163 (411)
T ss_pred HHHHHHhcc-ccCHHHHHHHHHHHHHHHHHHHHhc-c----c-----CCchhHHHHhhhhhHHHHH-HHhCCCHHH
Confidence 999999999 9999999999999999999988887 2 1 1377889999999999999 999987653
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=68.77 E-value=17 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFT 106 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~ 106 (239)
.+....+.+|.++||.+--. .+...+...|++.++++..
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~ 112 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLA 112 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHh
Confidence 67788899999999986442 2457888999999999985
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=67.49 E-value=30 Score=22.26 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=38.1
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC------eeEEEeCCHHHHHHHHH
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~------~~~v~v~~p~~i~~il~ 106 (239)
.|+--..+-++-|++.-. ...-+.++.-+||+|..+++|. .-+||-.|-..++....
T Consensus 13 lppevnriLyirNLp~~I----TseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKI----TSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred CChhhheeEEEecCCccc----cHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHH
Confidence 343333455666665422 2456778889999999999874 45777777777777663
No 35
>PF15050 SCIMP: SCIMP protein
Probab=64.26 E-value=36 Score=22.35 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=8.9
Q ss_pred CCCCCCccccceeec
Q 048689 45 QAPEAGGAWPLIGHL 59 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~ 59 (239)
.||-||.+.+..|+.
T Consensus 69 LPpLPPRg~~s~~~~ 83 (133)
T PF15050_consen 69 LPPLPPRGSPSPEDS 83 (133)
T ss_pred CCCCCCCCCCCcccc
Confidence 355556666666664
No 36
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=60.28 E-value=51 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=10.1
Q ss_pred HHhCCeeEEEcCCeeEEE
Q 048689 77 DKYGPIFTMKLGVKQALV 94 (239)
Q Consensus 77 ~~yG~i~~~~~~~~~~v~ 94 (239)
-+||.|++-.+-++.+-|
T Consensus 221 Grfg~V~KaqL~~~~VAV 238 (534)
T KOG3653|consen 221 GRFGCVWKAQLDNRLVAV 238 (534)
T ss_pred CccceeehhhccCceeEE
Confidence 346777666654544433
No 37
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=60.22 E-value=33 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=7.6
Q ss_pred cccceeecccc
Q 048689 52 AWPLIGHLHIL 62 (239)
Q Consensus 52 ~~p~lG~~~~~ 62 (239)
.-|..||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 45788887654
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=57.80 E-value=29 Score=18.83 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHH
Q 048689 73 GNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 73 ~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~ 106 (239)
.+...+||+|-.+.+. +.-.|-..+++.++....
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 4677899999888753 334677789999988875
No 39
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=53.25 E-value=17 Score=18.72 Aligned_cols=6 Identities=50% Similarity=0.351 Sum_probs=2.4
Q ss_pred HHHhhh
Q 048689 29 ISRNGQ 34 (239)
Q Consensus 29 ~~~~~~ 34 (239)
+++.+.
T Consensus 29 iYRKw~ 34 (43)
T PF08114_consen 29 IYRKWQ 34 (43)
T ss_pred HHHHHH
Confidence 444443
No 40
>PLN03120 nucleic acid binding protein; Provisional
Probab=51.13 E-value=1.1e+02 Score=23.56 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=41.2
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEc------CCeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL------GVKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~------~~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
++||+.. .-....+.++...||+|..+.+ .+.-+|.+.+++.++..+..++..+..+.
T Consensus 8 fVgNLs~----~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 8 KVSNVSL----KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred EEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 3555543 2334667778888999988876 24468889999999999876666665555
No 41
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=45.40 E-value=98 Score=24.68 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=43.9
Q ss_pred hhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhcccc
Q 048689 150 ELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRY 214 (239)
Q Consensus 150 ~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~ 214 (239)
+.++.++.+.+..+......++...++......+.+ +...+..+.+..-.+.+||. ++|.+.
T Consensus 168 ~sysT~atrkmN~iL~~KlREfa~~Lr~~~~~~~~~--~~i~~t~~emm~eiFrvici-clg~PP 229 (457)
T KOG4128|consen 168 HSYSTQATRKMNLILKSKLREFASMLRAQFTFNGNG--CRIPDTIQEMMPEIFRVICI-CLGEPP 229 (457)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHHHhh-hcCCCc
Confidence 457777888888888888888888876654433332 55667777777788899987 567654
No 42
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=43.88 E-value=1.3e+02 Score=22.01 Aligned_cols=60 Identities=10% Similarity=0.253 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccc-ccCCchhHHHHHHHHH
Q 048689 167 EVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKR-YTSQSQEVNDWQQQIT 229 (239)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~-~~~~~~~~~~~~~~~~ 229 (239)
...+|++.+.+. ...+++|..--+...+..-...+++++.+|+. +.+.+.+...+.+..+
T Consensus 7 s~~ef~~~las~---~PtPGGGsasAl~ga~g~~L~~MV~~lt~gKk~Y~~~d~e~k~i~~~~~ 67 (208)
T COG3404 7 SLKEFLDALASE---KPTPGGGSASALVGAMGCALASMVANLTRGKKGYEDYDDEMKEILEELQ 67 (208)
T ss_pred cHHHHHHHHcCC---CCCCCCchHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 456666666332 34455556667788888888899999999987 4444544444444333
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=43.35 E-value=1.1e+02 Score=21.02 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=34.9
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
++|++..- -....+.++.++||+|..+.+. +.-+|-..+++.++.++..
T Consensus 38 fVgnL~~~----~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 38 FIGGLSWG----TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred EEeCCCCC----CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45555432 3356778888899998777652 2357888999999999863
No 44
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=41.99 E-value=89 Score=24.86 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=39.3
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCe---------eEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVK---------QALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~---------~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
++||+..- --...+.++..+||+|..+++... -+|...+++.+...+.. ++..+..|.
T Consensus 273 fV~NL~~~----~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~ 340 (352)
T TIGR01661 273 FVYNLSPD----TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV 340 (352)
T ss_pred EEeCCCCC----CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 55666532 335667788899999988876422 38889999988888753 455444443
No 45
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=39.47 E-value=1.1e+02 Score=20.01 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCC-CccccchHHHHHHH
Q 048689 140 WRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSR-KVVSVEMIHWLEGT 200 (239)
Q Consensus 140 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~ 200 (239)
++.+|+..-........+..+...+++.+.++++.+.+.+......+ .=+.-|...|++++
T Consensus 34 Lke~~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~~q~~~~~gvtE~LK~~dqm~wv~~m 95 (111)
T PF14198_consen 34 LKEHKPILYNNLLLSGKLNEHLAEIDEQAQERFERLVEQMAEKEGVTEELKAEDQMEWVRRM 95 (111)
T ss_pred HHHhHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHhhhhcCHHHHHHHH
Confidence 34444443333444556777777889999999988876654433221 00235666666554
No 46
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=39.12 E-value=76 Score=19.74 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHh--hcChhHHHHhH----HH-HHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHH
Q 048689 137 GNYWRQSRKIATIE--LLSNRRLEKLK----HV-RESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRII 209 (239)
Q Consensus 137 g~~w~~~Rk~~~~~--~f~~~~l~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~ 209 (239)
|..||+.=+.+... +++...+.... .. +.+.+-+++.+|.+. .... -..-.+-..+...-++.+..-+
T Consensus 13 Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~----eg~~-Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 13 GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQS----EGKK-ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHh----cccc-chHHHHHHHHHHccchHHHHHH
Confidence 78899886666520 36666665543 22 666777777777432 1110 1122344555555555554444
Q ss_pred hc
Q 048689 210 AG 211 (239)
Q Consensus 210 fG 211 (239)
+|
T Consensus 88 ~~ 89 (90)
T cd08780 88 LG 89 (90)
T ss_pred hc
Confidence 43
No 47
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=37.56 E-value=34 Score=18.93 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.0
Q ss_pred hCCeeEEEcCCeeEEEeC
Q 048689 79 YGPIFTMKLGVKQALVVS 96 (239)
Q Consensus 79 yG~i~~~~~~~~~~v~v~ 96 (239)
-|++++++-||+.++|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 389999999998888763
No 48
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=35.67 E-value=99 Score=19.75 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHhCCeeEEE--------------cCCeeEEE--eCCHHHHHHHHHhCCcccC
Q 048689 66 EPAHRVLGNMADKYGPIFTMK--------------LGVKQALV--VSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~--------------~~~~~~v~--v~~p~~i~~il~~~~~~~~ 113 (239)
......+.+...+||.|.... ..+.+++. ..+|..++..|.+++..+.
T Consensus 16 ~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 16 PSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred HHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 445677778888899987774 22334444 4589999999987776654
No 49
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.52 E-value=3.2e+02 Score=24.08 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=25.9
Q ss_pred ChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 153 SNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
+++....+.....+.++++++++ .....+..++++.+.+...
T Consensus 52 t~eGF~~l~~~a~~~t~eLi~~~------~~~~~g~~ti~~~DeiSd~ 93 (704)
T KOG2090|consen 52 TAEGFNRLPEAALEKTQELIDEL------LSTPSGPRTIQIFDEISDT 93 (704)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH------hcCCCCchHHHHHHHHhHH
Confidence 34455566667788899999988 3333334456666655443
No 50
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=30.46 E-value=1.2e+02 Score=21.78 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=31.4
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEc----CCeeEEEeCCHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL----GVKQALVVSNWEIAKECF 105 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~----~~~~~v~v~~p~~i~~il 105 (239)
-++||+..=. ...-++....+||++..+|+ .+.-+|=+-||..+.+..
T Consensus 13 VYVGnL~~~a----~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 13 VYVGNLGSRA----TKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred EEeccCCCCc----chHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 4567765432 23455778889999999986 344567777776665554
No 51
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=30.32 E-value=2.4e+02 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 67 PAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 67 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
...+.+.+..++||+|+-..+- |--+|-+.|+|++.....+.......|.
T Consensus 24 T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 24 THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 3456778888999987654321 3358899999999999865444444444
No 52
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.77 E-value=1.5e+02 Score=18.39 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=3.6
Q ss_pred ccccee
Q 048689 52 AWPLIG 57 (239)
Q Consensus 52 ~~p~lG 57 (239)
.-|++|
T Consensus 66 YrPvI~ 71 (94)
T PF05393_consen 66 YRPVIG 71 (94)
T ss_pred cccccc
Confidence 346666
No 53
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=28.33 E-value=70 Score=20.64 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=21.6
Q ss_pred cccceeeccccCCCCchHHHHHHHHHH-hCCeeEEEc
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADK-YGPIFTMKL 87 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~-yG~i~~~~~ 87 (239)
.+|+++.++... ++....+..-.++ +..++-+..
T Consensus 33 riP~v~~iY~~~--k~~~~~~~~~~~~~f~~vVlV~~ 67 (108)
T PF04367_consen 33 RIPLVKSIYSSI--KQLVESFSGDKKKSFKKVVLVEF 67 (108)
T ss_pred HCCchHHHHHHH--HHHHHHHhhcccccCCeEEEEEe
Confidence 478888887766 5666666555444 555666655
No 54
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=28.26 E-value=1.3e+02 Score=20.99 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhcCC
Q 048689 190 SVEMIHWLEGTVLDIILRIIAGKRYTSQSQEVNDWQQQITKFTALSGQ 237 (239)
Q Consensus 190 ~~d~~~~~~~~~~dii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (239)
.-++...+..++.++...+ .|..++. +. -.+.++++...++.
T Consensus 121 ~~~L~~~i~~la~~~a~ki-l~~~l~~--~~---~~~li~~~i~~~~~ 162 (164)
T PRK14473 121 LSELKSQIADLVTLTASRV-LGAELQA--RG---HDALIAESLAALGR 162 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhHcCH--HH---HHHHHHHHHHhccc
Confidence 3467788888888888885 4666643 11 24455555555443
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=27.36 E-value=1.2e+02 Score=16.81 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCeeEEEcCC--------eeEEEeCCHHHHHHHHH
Q 048689 69 HRVLGNMADKYGPIFTMKLGV--------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~~--------~~~v~v~~p~~i~~il~ 106 (239)
...+.++..+||++..+.+.. .-+|...+++.++.++.
T Consensus 12 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~ 57 (70)
T PF00076_consen 12 EEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALE 57 (70)
T ss_dssp HHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHH
Confidence 466778888899986665432 13677889999999986
No 56
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=26.84 E-value=1.6e+02 Score=18.04 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCe---eEEEcCCeeEEEeC-----CHHHHHHHHH
Q 048689 70 RVLGNMADKYGPI---FTMKLGVKQALVVS-----NWEIAKECFT 106 (239)
Q Consensus 70 ~~~~~~~~~yG~i---~~~~~~~~~~v~v~-----~p~~i~~il~ 106 (239)
..-.+++++|.++ ++++.++.+-+.|. |-+.+.++++
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLq 68 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQ 68 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHH
Confidence 4446677888776 88998888777764 3477777775
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=26.72 E-value=1e+02 Score=17.33 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHhC
Q 048689 70 RVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTTN 108 (239)
Q Consensus 70 ~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~~ 108 (239)
..+.++...||+|-.+.+. +.-+|-+.+++.+++++...
T Consensus 13 ~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 13 EDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 5567777788987666542 22467789999999998754
No 58
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=26.65 E-value=1.4e+02 Score=18.21 Aligned_cols=9 Identities=0% Similarity=-0.104 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 048689 70 RVLGNMADK 78 (239)
Q Consensus 70 ~~~~~~~~~ 78 (239)
.++..+|+-
T Consensus 55 DQVrAlHRl 63 (92)
T PHA02681 55 DQVRAFHAL 63 (92)
T ss_pred HHHHHHHHH
Confidence 444444443
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=26.00 E-value=2.2e+02 Score=24.11 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCeeEEEcC------------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 68 AHRVLGNMADKYGPIFTMKLG------------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~------------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
....+.+.+.+||.|..+.+. |.-+|-..+++.++..+.. ++..|.++.
T Consensus 432 ~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 432 IYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV 493 (509)
T ss_pred HHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345677889999999888753 2337888999999988853 444554443
No 60
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=25.99 E-value=3.1e+02 Score=21.13 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCeeEEEc--CCee-EEEeCCHHHHHHHHHh----CCcccCCCCCchhhhhhcCCcceEEecCCCchhH
Q 048689 69 HRVLGNMADKYGPIFTMKL--GVKQ-ALVVSNWEIAKECFTT----NDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWR 141 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~--~~~~-~v~v~~p~~i~~il~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~ 141 (239)
-+-+..++..|..-+.+.- ++.. ..+.+|-+.+-+||.+ -+..|+.+.+..+.-++..+..+.+...+|.+-|
T Consensus 67 g~nik~lr~d~na~v~vpds~~peri~tisad~~ti~~ilk~iip~lee~f~~~~pce~rllihqs~ag~iigrngskik 146 (390)
T KOG2192|consen 67 GKNIKALRTDYNASVSVPDSSGPERILTISADIETIGEILKKIIPTLEEGFQLPSPCELRLLIHQSLAGGIIGRNGSKIK 146 (390)
T ss_pred cccHHHHhhhccceeeccCCCCCceeEEEeccHHHHHHHHHHHhhhhhhCCCCCCchhhhhhhhhhhccceecccchhHH
Confidence 3556778888887666642 2333 3445677777777653 4556666665544444444445566667799999
Q ss_pred HHHHHHHH
Q 048689 142 QSRKIATI 149 (239)
Q Consensus 142 ~~Rk~~~~ 149 (239)
.+|...+.
T Consensus 147 elrekcsa 154 (390)
T KOG2192|consen 147 ELREKCSA 154 (390)
T ss_pred HHHHhhhh
Confidence 99987664
No 61
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.24 E-value=1.7e+02 Score=17.91 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHhhcChhHHHHhH---HHHHHHHHHHHHHHHh
Q 048689 137 GNYWRQSRKIATIELLSNRRLEKLK---HVRESEVKASIQRLYK 177 (239)
Q Consensus 137 g~~w~~~Rk~~~~~~f~~~~l~~~~---~~~~~~~~~~~~~l~~ 177 (239)
|..|+++=+.+ .|+...+.... +...+.+.+++..|.+
T Consensus 18 G~~Wk~Lar~L---Gls~~dI~~i~~~~~~~~eq~~~mL~~W~~ 58 (86)
T cd08318 18 GEDWKTLAPHL---EMKDKEIRAIESDSEDIKMQAKQLLVAWQD 58 (86)
T ss_pred hhhHHHHHHHc---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 78888864332 47777665544 2245667777777743
No 62
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=25.24 E-value=1.3e+02 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHhC-CeeEEEcCCe-e---EEEeCCHHHHHH
Q 048689 66 EPAHRVLGNMADKYG-PIFTMKLGVK-Q---ALVVSNWEIAKE 103 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG-~i~~~~~~~~-~---~v~v~~p~~i~~ 103 (239)
+.......++++++| |+..+..+|. | -++++||-.+--
T Consensus 154 GkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAGv 196 (218)
T COG1707 154 GKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAGV 196 (218)
T ss_pred chHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhhh
Confidence 789999999999998 8888886543 2 477888865543
No 63
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.22 E-value=1.1e+02 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.5
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGP 81 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~ 81 (239)
...|...... .+...-++...+||||
T Consensus 343 G~~G~glGat--p~a~anm~~v~~~ygp 368 (368)
T PF03616_consen 343 GFCGFGLGAT--PNAMANMQAVTEKYGP 368 (368)
T ss_pred hhhccCCCcc--HHHHHHHHHHHHhhCc
Confidence 3444444444 6778888999999997
No 64
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=24.13 E-value=2.6e+02 Score=23.27 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCeeEEEcC-----CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 69 HRVLGNMADKYGPIFTMKLG-----VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
..-+.+.+.+||+|..+.+. |.-+|-..+++.+..++.. ++..|..+.
T Consensus 386 ~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~ 439 (457)
T TIGR01622 386 LDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKM 439 (457)
T ss_pred HHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeE
Confidence 45567778999999887653 3446668899998888753 444444433
No 65
>PHA02819 hypothetical protein; Provisional
Probab=23.38 E-value=1.2e+02 Score=17.83 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
.-...||.=..+.|+++.++++.+...+
T Consensus 4 LYaaiFGvFmsS~DdDFnnFI~VVksVL 31 (71)
T PHA02819 4 LYSAIFGVFMSSSDDDFNNFINVVKSVL 31 (71)
T ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHH
Confidence 3445677766667777777777776654
No 66
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=23.08 E-value=1.6e+02 Score=22.41 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=14.2
Q ss_pred HHHHHhCCeeEEEcCCeeEEEeCC
Q 048689 74 NMADKYGPIFTMKLGVKQALVVSN 97 (239)
Q Consensus 74 ~~~~~yG~i~~~~~~~~~~v~v~~ 97 (239)
+...+||.+. +++||.++++++.
T Consensus 164 ~~~~~~G~L~-fylGGDNi~~v~p 186 (246)
T PF05165_consen 164 KYLEKYGSLA-FYLGGDNIMAVCP 186 (246)
T ss_dssp HHHHTTT----EEEETTEEEEE-T
T ss_pred HHHHhcCCEE-EEecCceEEEECC
Confidence 3446678764 6789999999885
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=22.71 E-value=1.4e+02 Score=23.37 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=31.9
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC-eeEEEeCCHHHHHHHHH
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV-KQALVVSNWEIAKECFT 106 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-~~~v~v~~p~~i~~il~ 106 (239)
++||+.. +--+..+..+.++||.|.-.-+-. --+|.|-|-...+.+.+
T Consensus 6 FIGNLp~----~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedair 54 (346)
T KOG0109|consen 6 FIGNLPR----EATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIR 54 (346)
T ss_pred hccCCCc----ccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHh
Confidence 5677665 334567788899999887765432 25777776666665554
No 68
>PHA02844 putative transmembrane protein; Provisional
Probab=22.51 E-value=1.3e+02 Score=17.92 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
.-..+||.=.++.|+++.++++.+...+
T Consensus 4 LYaaiFGVFmsS~DdDFnnFI~vVksVL 31 (75)
T PHA02844 4 LYTAIFGVFLSSENEDFNNFIDVVKSVL 31 (75)
T ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHH
Confidence 3445677666667777777777766554
No 69
>PHA02975 hypothetical protein; Provisional
Probab=22.37 E-value=1.4e+02 Score=17.55 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=18.3
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 206 LRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 206 ~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
-...||.=.++.|+++.++.+.+...+
T Consensus 5 YaaiFGvFmsS~DdDF~nFI~vVksVL 31 (69)
T PHA02975 5 FTGTYGVFLESNDSDFEDFIDTIMHVL 31 (69)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence 345677766667777777777766554
No 70
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=22.32 E-value=95 Score=22.45 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhcccccC
Q 048689 195 HWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 195 ~~~~~~~~dii~~~~fG~~~~~ 216 (239)
.....+++|.||.-+||.|.++
T Consensus 83 a~S~e~ALn~ictr~fG~DLdS 104 (202)
T PF01707_consen 83 AYSPEVALNEICTRFFGVDLDS 104 (202)
T ss_dssp ---HHHHHHHHHHHHHSS-GGG
T ss_pred ccCHHHHHHHHHHHHhccccCc
Confidence 3556789999999999999875
No 71
>PHA02650 hypothetical protein; Provisional
Probab=22.18 E-value=1.3e+02 Score=18.17 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=18.6
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 205 ILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 205 i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
.-..+||.=.++.|+++.++++.+...+
T Consensus 4 LYaaiFGVFmsS~DdDFnnFI~VVkSVL 31 (81)
T PHA02650 4 LYAAIFGVFMSSTDDDFNNFIDVVKSVL 31 (81)
T ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 3445677766667777777777766654
No 72
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=22.13 E-value=94 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=21.1
Q ss_pred CccccceeeccccC------CCCchHHHHHHHHHHh
Q 048689 50 GGAWPLIGHLHILR------GSEPAHRVLGNMADKY 79 (239)
Q Consensus 50 p~~~p~lG~~~~~~------~~~~~~~~~~~~~~~y 79 (239)
|.|+|+++-+|.+. ..+|.|.--++..++|
T Consensus 154 PFPlPlla~iwGitvGAiGSstGDvhYGaEReyQ~~ 189 (269)
T PF04206_consen 154 PFPLPLLALIWGITVGAIGSSTGDVHYGAEREYQNY 189 (269)
T ss_pred CCchhHHHHHHHHhhcccccccCccccchHHhhhcC
Confidence 45688888877652 3378888877777765
No 73
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=22.05 E-value=3e+02 Score=21.11 Aligned_cols=29 Identities=3% Similarity=-0.053 Sum_probs=20.1
Q ss_pred HHHhCCeeEEEcCCeeEEEe---CCHHHHHHHH
Q 048689 76 ADKYGPIFTMKLGVKQALVV---SNWEIAKECF 105 (239)
Q Consensus 76 ~~~yG~i~~~~~~~~~~v~v---~~p~~i~~il 105 (239)
.+.||.+ .+++||.+++++ .+.+.+.+++
T Consensus 174 ~~~~g~l-~ff~GGDN~~~~~~~l~~~~~~~~i 205 (254)
T PRK02240 174 RKAHDAL-SFFVGGDNFMAPCPGLSEGDFLDAI 205 (254)
T ss_pred HHhcCcE-EEEecCceEEEECCCCCHHHHHHHH
Confidence 3337764 577899999999 5555666665
No 74
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.91 E-value=2.3e+02 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhhc
Q 048689 20 VIFLSIFLLISRNGQK 35 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (239)
++...+..+++++.++
T Consensus 158 VlA~~VA~L~~~F~RR 173 (215)
T PF05084_consen 158 VLAVSVAMLTWFFLRR 173 (215)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344434444443
No 75
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=20.94 E-value=65 Score=17.35 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=8.8
Q ss_pred HHHHHhCCeeEE
Q 048689 74 NMADKYGPIFTM 85 (239)
Q Consensus 74 ~~~~~yG~i~~~ 85 (239)
+.|+|||..+-+
T Consensus 4 ~FHdKYGn~~l~ 15 (51)
T cd01403 4 DFHDKYGNAVLI 15 (51)
T ss_pred chhhhcCceEEe
Confidence 578999987544
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=20.91 E-value=1.6e+02 Score=15.95 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh
Q 048689 69 HRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 107 (239)
...+.++.++||++..+.+. +.-++-..+++.++.++..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 45566777899987766542 3346778899999888753
No 77
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=20.87 E-value=3.4e+02 Score=21.93 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=35.1
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT 107 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 107 (239)
-+++++..-. ..+.+.++..+||.|..+.+.. .-+|-..+.+.+++.+..
T Consensus 196 lfV~nLp~~v----tee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 196 LYVTNLPRTI----TDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eEEeCCCCcc----cHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4566665432 2456788889999987776532 237888999999988864
No 78
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=20.53 E-value=46 Score=25.83 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHHhCC-eeEEE---cCCeeEEEeCCH
Q 048689 65 SEPAHRVLGNMADKYGP-IFTMK---LGVKQALVVSNW 98 (239)
Q Consensus 65 ~~~~~~~~~~~~~~yG~-i~~~~---~~~~~~v~v~~p 98 (239)
..++...+.++.+.+|| ||.+| +..+++++++.|
T Consensus 157 ~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~ 194 (280)
T PF09804_consen 157 PYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPP 194 (280)
T ss_pred CCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCC
Confidence 36788999999999998 44444 677888888766
No 79
>PHA02692 hypothetical protein; Provisional
Probab=20.51 E-value=1.5e+02 Score=17.45 Aligned_cols=27 Identities=4% Similarity=0.171 Sum_probs=16.7
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 206 LRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 206 ~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
...+||.=.++.|+++.++.+.+...+
T Consensus 5 yaaifGVFmss~DdDF~~Fi~vVksVL 31 (70)
T PHA02692 5 YAGVFGSFLSNSDEDFEEFLNIVRTVM 31 (70)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 345667655556667777777666544
No 80
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=20.40 E-value=2.2e+02 Score=17.47 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHhhcChhHHHHhHHH-----HHHHHHHHHHHHHh
Q 048689 137 GNYWRQSRKIATIELLSNRRLEKLKHV-----RESEVKASIQRLYK 177 (239)
Q Consensus 137 g~~w~~~Rk~~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~ 177 (239)
|..|+..=+.+ .|+...+..+... +.+.+.+++..|.+
T Consensus 13 G~~Wk~lar~L---G~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~ 55 (86)
T cd08777 13 GKKWKRCARKL---GFTESEIEEIDHDYERDGLKEKVHQMLHKWKM 55 (86)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 78898874432 4888888776643 45667777777743
Done!