Query 048689
Match_columns 239
No_of_seqs 174 out of 1690
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 21:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 8E-28 2.7E-32 197.2 17.7 179 46-233 9-189 (494)
2 3pm0_A Cypib1, cytochrome P450 99.9 3.1E-27 1.1E-31 194.2 14.1 180 46-235 10-195 (507)
3 3nxu_A Cytochrome P450 3A4; al 99.9 3.5E-27 1.2E-31 192.9 12.5 157 46-216 16-173 (485)
4 3s79_A Cytochrome P450 19A1; o 99.9 1.3E-26 4.3E-31 190.5 14.2 161 46-215 46-209 (503)
5 3tbg_A Cytochrome P450 2D6; mo 99.9 5.2E-26 1.8E-30 185.7 17.6 178 45-232 10-191 (479)
6 3e6i_A CYPIIE1, P450-J, cytoch 99.9 7.4E-26 2.5E-30 184.7 18.1 177 45-234 10-188 (476)
7 2fdv_A Cytochrome P450 2A6; CY 99.9 1.9E-25 6.6E-30 182.3 16.7 176 46-233 11-188 (476)
8 3k9v_A 1,25-dihydroxyvitamin D 99.9 3.4E-25 1.2E-29 181.0 17.8 182 45-234 25-216 (482)
9 1po5_A Cytochrome P450 2B4; ox 99.9 2.5E-25 8.7E-30 181.6 16.9 175 46-232 11-187 (476)
10 3czh_A Cytochrome P450 2R1; vi 99.9 3.3E-25 1.1E-29 181.1 15.6 178 46-234 13-194 (481)
11 3qz1_A Steroid 21-hydroxylase; 99.9 2.2E-26 7.4E-31 188.8 8.3 161 59-232 37-197 (496)
12 1r9o_A Cytochrome P450 2C9; mo 99.9 3.5E-25 1.2E-29 180.8 14.4 176 46-233 12-189 (477)
13 2hi4_A Cytochrome P450 1A2; CY 99.9 2.8E-25 9.7E-30 182.2 13.5 177 48-234 19-205 (495)
14 3ld6_A Lanosterol 14-alpha dem 99.9 1.4E-25 4.8E-30 182.4 10.4 156 45-216 12-169 (461)
15 3gw9_A Sterol 14alpha-demethyl 99.9 6.1E-25 2.1E-29 178.0 10.5 171 45-231 4-177 (450)
16 3n9y_A Cholesterol SIDE-chain 99.9 3.7E-23 1.3E-27 169.2 17.5 183 45-233 10-202 (487)
17 2ij2_A Cytochrome P450 BM3; mo 99.9 1.4E-23 4.9E-28 171.0 14.2 159 46-216 5-164 (470)
18 2cib_A Cytochrome P450 51; hem 99.9 4.8E-23 1.7E-27 167.2 13.7 154 45-216 5-159 (455)
19 3i3k_A Lanosterol 14-alpha dem 99.9 2.7E-23 9.2E-28 168.9 10.8 155 46-216 13-169 (461)
20 3v8d_A Cholesterol 7-alpha-mon 99.9 2.3E-23 7.8E-28 170.7 10.1 174 46-228 14-189 (491)
21 2ve3_A Putative cytochrome P45 99.9 3.9E-23 1.3E-27 167.3 11.2 149 46-211 13-161 (444)
22 3dbg_A Putative cytochrome P45 99.9 4.3E-23 1.5E-27 168.0 10.1 167 45-232 23-191 (467)
23 3mdm_A Cholesterol 24-hydroxyl 99.9 6.5E-21 2.2E-25 154.7 14.4 142 66-216 10-155 (456)
24 1n97_A CYP175A1; electron tran 99.9 1.9E-21 6.6E-26 154.7 9.7 144 51-215 5-150 (389)
25 1izo_A P450bsbeta, cytochrome 99.8 1.8E-20 6.3E-25 150.4 15.1 160 53-233 8-171 (417)
26 2cd8_A Cytochrome P450 monooxy 99.8 8.4E-21 2.9E-25 153.2 11.8 153 46-215 27-186 (436)
27 3dax_A Cytochrome P450 7A1; ch 99.8 9.9E-21 3.4E-25 155.0 10.5 162 46-216 14-177 (491)
28 3awm_A Fatty acid alpha-hydrox 99.8 1.7E-19 5.9E-24 144.7 12.8 159 54-233 8-170 (415)
29 3dsk_A Cytochrome P450 74A, ch 99.8 8.6E-20 3E-24 149.6 8.1 163 45-216 28-205 (495)
30 1jfb_A Nitric-oxide reductase 99.8 3.9E-19 1.3E-23 142.1 10.2 155 47-215 3-163 (404)
31 1ued_A P450 OXYC, P450 monooxy 99.8 1.7E-18 5.7E-23 138.5 12.3 148 46-215 11-170 (406)
32 3b6h_A Prostacyclin synthase; 99.8 2.8E-18 9.7E-23 140.7 13.3 157 46-217 19-178 (498)
33 3b98_A Prostaglandin I2 syntha 99.8 1.8E-18 6E-23 141.1 10.4 153 46-213 20-174 (475)
34 2zbx_A Cytochrome P450-SU1; be 99.8 1.9E-17 6.5E-22 132.7 14.3 150 49-215 9-168 (412)
35 3dan_A Cytochrome P450 74A2; A 99.7 6.8E-18 2.3E-22 137.5 9.5 162 46-216 10-187 (473)
36 1s1f_A Putative cytochrome P45 99.7 7.6E-17 2.6E-21 128.9 14.9 147 49-215 12-166 (406)
37 2zwu_A Camphor 5-monooxygenase 99.7 1.4E-16 4.7E-21 127.7 15.6 151 45-215 11-173 (415)
38 3oo3_A OXY protein; cytochrome 99.7 7.2E-17 2.5E-21 128.2 13.4 137 66-215 12-152 (384)
39 3abb_A CYP105D6, cytochrome P4 99.7 8.4E-17 2.9E-21 128.8 13.5 139 60-215 20-167 (408)
40 3tyw_A Putative cytochrome P45 99.7 2E-16 6.7E-21 127.0 14.4 136 66-216 29-173 (417)
41 3ejb_B Biotin biosynthesis cyt 99.7 4.7E-16 1.6E-20 124.3 15.8 132 66-215 13-152 (404)
42 3a4g_A Vitamin D hydroxylase; 99.7 2.2E-16 7.7E-21 126.4 13.6 134 66-215 20-159 (411)
43 3ivy_A Cytochrome P450 CYP125; 99.7 6.6E-17 2.2E-21 130.3 10.5 151 47-214 20-187 (433)
44 2wm5_A CYP124, putative cytoch 99.7 2.6E-16 8.9E-21 126.9 12.7 138 66-215 44-192 (435)
45 1z8o_A 6-deoxyerythronolide B 99.7 9.6E-16 3.3E-20 122.5 15.3 132 66-216 14-163 (404)
46 4fb2_A P450CIN; heme, monooxyg 99.7 1.5E-16 5E-21 127.0 10.3 135 66-215 19-156 (398)
47 3aba_A Cytochrome P450; oxidor 99.7 4.3E-16 1.5E-20 124.5 13.0 135 66-215 19-160 (403)
48 1odo_A Putative cytochrome P45 99.7 2.5E-16 8.4E-21 126.1 11.4 137 66-215 15-162 (408)
49 1cpt_A Cytochrome P450-TERP; o 99.7 1.8E-16 6.2E-21 127.6 10.2 147 55-215 11-175 (428)
50 2jjn_A Cytochrome P450 113A1; 99.7 3.6E-16 1.2E-20 125.3 11.2 130 66-216 28-158 (411)
51 2y5n_A MYCG, P-450-like protei 99.7 5.2E-16 1.8E-20 124.5 11.2 135 66-215 37-176 (417)
52 2xbk_A PIMD protein; epoxidati 99.7 3.1E-15 1.1E-19 119.4 15.3 134 66-215 26-170 (404)
53 1gwi_A CYP154C1, cytochrome P4 99.7 1.2E-15 4.2E-20 122.1 12.4 135 66-215 17-165 (411)
54 2z3t_A Cytochrome P450; monoxy 99.6 2.2E-15 7.6E-20 121.1 13.8 132 66-215 20-170 (425)
55 2z36_A MOXA, cytochrome P450 t 99.6 1.3E-15 4.3E-20 122.1 12.1 137 66-215 22-169 (413)
56 2xkr_A CYP142, putative cytoch 99.6 3.1E-15 1.1E-19 119.3 13.3 129 66-215 18-147 (398)
57 2uuq_A CYP130, cytochrome P450 99.6 2.2E-15 7.6E-20 120.7 12.4 133 66-215 25-168 (414)
58 1q5d_A P450 epoxidase; cytochr 99.6 1E-15 3.5E-20 122.9 9.6 132 66-215 26-167 (419)
59 3mgx_A Putative P450 monooxyge 99.6 1.6E-15 5.5E-20 121.5 10.5 134 66-214 37-177 (415)
60 2dkk_A Cytochrome P450; CYP158 99.6 2.4E-15 8.3E-20 120.4 11.4 135 66-215 27-169 (411)
61 3tkt_A Cytochrome P450; aromat 99.6 1.8E-15 6.1E-20 122.5 9.3 135 68-215 47-197 (450)
62 3nc3_A Cytochrome P450 CYPX; c 99.6 3.5E-15 1.2E-19 120.5 9.1 132 66-215 53-185 (441)
63 3oft_A Cytochrome P450, CYP101 99.6 8.7E-15 3E-19 116.6 10.9 133 66-214 24-157 (396)
64 3r9b_A Cytochrome P450 164A2; 99.6 3.2E-14 1.1E-18 114.2 13.9 131 66-215 29-168 (418)
65 3lxh_A Cytochrome P450; heme, 99.6 2.3E-14 8E-19 115.1 12.2 148 66-232 38-187 (421)
66 1n40_A P450 MT2, cytochrome P4 99.6 3.8E-15 1.3E-19 118.7 7.0 131 66-215 16-155 (396)
67 3buj_A CALO2; heme, iron, meta 99.6 2.5E-14 8.6E-19 114.0 11.6 131 66-215 13-151 (397)
68 1lfk_A OXYB, P450 monooxygenas 99.6 1.3E-14 4.3E-19 115.8 9.0 129 73-215 20-161 (398)
69 3rwl_A Cytochrome P450 alkane 99.5 1.7E-13 5.7E-18 110.2 14.1 135 66-215 38-183 (426)
70 2rfb_A Cytochrome P450; heme, 99.5 4.6E-14 1.6E-18 110.3 9.1 114 77-215 2-116 (343)
71 1io7_A Cytochrome P450 CYP119; 99.5 4.5E-14 1.5E-18 111.4 8.4 127 69-215 2-139 (368)
72 3b4x_A 367AA long hypothetical 99.5 1.6E-13 5.6E-18 108.2 8.5 122 69-213 2-134 (367)
73 2wiy_A XPLA-heme, cytochrome P 99.4 9.6E-13 3.3E-17 104.8 9.2 131 66-215 20-151 (394)
74 4dnj_A Putative cytochrome P45 99.4 4.6E-12 1.6E-16 101.4 11.4 147 50-213 17-170 (412)
75 3p3o_A Cytochrome P450; monoox 99.3 1.3E-12 4.3E-17 104.8 4.6 128 66-215 33-171 (416)
76 4dxy_A Cytochrome P450, CYP101 98.9 9.9E-09 3.4E-13 82.2 12.0 134 66-214 37-172 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 5E-09 1.7E-13 82.6 -9.1 128 50-215 40-180 (381)
78 2diu_A KIAA0430 protein; struc 90.8 0.96 3.3E-05 27.6 5.9 64 54-118 12-77 (96)
79 1s79_A Lupus LA protein; RRM, 82.3 6.6 0.00022 24.1 6.7 57 53-113 13-77 (103)
80 2a3j_A U1 small nuclear ribonu 81.2 8.6 0.00029 24.7 7.5 64 53-116 31-101 (127)
81 3d2w_A TAR DNA-binding protein 80.7 6.5 0.00022 23.3 5.9 52 49-104 9-64 (89)
82 2krb_A Eukaryotic translation 80.1 6.4 0.00022 22.6 7.7 50 55-106 5-65 (81)
83 1nu4_A U1A RNA binding domain; 79.5 6.2 0.00021 23.5 5.7 56 52-107 9-70 (97)
84 3lqv_A PRE-mRNA branch site pr 78.0 9.9 0.00034 23.5 8.0 57 46-106 3-65 (115)
85 1iqt_A AUF1, heterogeneous nuc 76.7 6.9 0.00024 21.9 5.1 41 69-109 13-62 (75)
86 2dgx_A KIAA0430 protein; RRM d 70.7 14 0.00048 22.0 5.9 54 53-106 11-70 (96)
87 2mss_A Protein (musashi1); RNA 70.3 12 0.0004 20.9 5.9 45 69-113 13-66 (75)
88 2nlw_A Eukaryotic translation 68.0 18 0.0006 22.0 7.2 61 53-115 17-89 (105)
89 3v4m_A Splicing factor U2AF 65 67.5 18 0.00062 22.2 5.7 49 68-116 28-88 (105)
90 3s6e_A RNA-binding protein 39; 66.7 13 0.00043 23.4 4.8 70 47-116 3-84 (114)
91 2pe8_A Splicing factor 45; RRM 66.1 15 0.0005 22.6 5.0 66 49-116 6-85 (105)
92 2la6_A RNA-binding protein FUS 65.0 19 0.00067 21.4 6.9 59 52-114 14-90 (99)
93 3beg_B Splicing factor, argini 61.6 26 0.00089 21.7 6.9 59 54-116 19-80 (115)
94 3ue2_A Poly(U)-binding-splicin 61.1 21 0.00073 22.5 5.2 67 50-116 19-100 (118)
95 1x4c_A Splicing factor, argini 59.3 27 0.00093 21.2 7.2 50 54-107 18-69 (108)
96 4f25_A Polyadenylate-binding p 58.9 29 0.001 21.4 5.9 56 54-113 8-71 (115)
97 2jwn_A Embryonic polyadenylate 58.3 30 0.001 21.6 5.7 55 55-113 40-103 (124)
98 1x4e_A RNA binding motif, sing 58.3 24 0.00081 20.2 5.0 51 52-106 6-65 (85)
99 3s7r_A Heterogeneous nuclear r 57.8 25 0.00084 20.2 5.0 54 52-109 12-74 (87)
100 2ad9_A Polypyrimidine tract-bi 57.1 34 0.0012 21.6 6.0 54 49-106 29-85 (119)
101 1sjr_A Polypyrimidine tract-bi 56.8 43 0.0015 22.7 6.9 54 55-112 50-109 (164)
102 2cq1_A PTB-like protein L; RRM 56.1 31 0.0011 20.9 5.8 56 47-106 11-69 (101)
103 1sjq_A Polypyrimidine tract-bi 54.6 35 0.0012 21.0 6.8 51 52-106 17-70 (105)
104 2dnz_A Probable RNA-binding pr 54.5 30 0.001 20.2 7.8 61 52-116 6-76 (95)
105 4fxv_A ELAV-like protein 1; RN 52.3 36 0.0012 20.4 5.7 56 54-113 22-87 (99)
106 2adc_A Polypyrimidine tract-bi 52.2 59 0.002 22.9 7.7 59 54-116 37-101 (229)
107 1whx_A Hypothetical protein ri 52.2 38 0.0013 20.7 7.3 59 54-116 13-75 (111)
108 1wg5_A Heterogeneous nuclear r 50.5 39 0.0013 20.3 6.9 60 53-116 17-85 (104)
109 3s8s_A Histone-lysine N-methyl 50.0 42 0.0014 20.6 5.8 50 53-106 8-66 (110)
110 2cq4_A RNA binding motif prote 49.9 31 0.0011 21.1 4.6 54 55-112 29-91 (114)
111 2rs2_A Musashi-1, RNA-binding 48.7 44 0.0015 20.4 5.8 51 54-108 28-87 (109)
112 1x4b_A Heterogeneous nuclear r 48.5 35 0.0012 20.9 4.7 50 54-107 30-88 (116)
113 3ulh_A THO complex subunit 4; 48.2 43 0.0015 20.1 6.0 56 53-112 31-95 (107)
114 1whw_A Hypothetical protein ri 48.0 41 0.0014 19.8 6.9 51 53-107 10-69 (99)
115 3zzy_A Polypyrimidine tract-bi 47.8 53 0.0018 21.1 5.6 54 55-112 32-91 (130)
116 2dgu_A Heterogeneous nuclear r 47.4 43 0.0015 20.0 6.7 57 53-113 13-71 (103)
117 2dgs_A DAZ-associated protein 47.2 42 0.0014 19.8 7.9 61 52-116 11-80 (99)
118 2dnr_A Synaptojanin-1; RRM dom 47.0 45 0.0015 20.0 5.2 47 66-112 26-73 (91)
119 2jvr_A Nucleolar protein 3; RN 46.9 49 0.0017 20.5 6.3 57 53-113 30-93 (111)
120 1uaw_A Mouse-musashi-1; RNP-ty 46.6 32 0.0011 19.0 4.0 40 70-109 15-63 (77)
121 2cpi_A CCR4-NOT transcription 46.5 18 0.00062 22.2 3.0 60 52-115 16-91 (111)
122 2cqc_A Arginine/serine-rich sp 46.5 42 0.0014 19.5 6.7 52 52-107 16-76 (95)
123 2cjk_A Nuclear polyadenylated 46.3 59 0.002 21.2 5.9 56 54-113 90-154 (167)
124 2wbr_A GW182, gawky, LD47780P; 46.2 46 0.0016 19.9 6.8 51 52-106 8-61 (89)
125 2hvz_A Splicing factor, argini 45.9 45 0.0015 19.7 6.1 48 69-116 14-66 (101)
126 2voo_A Lupus LA protein; RNA-b 45.7 41 0.0014 23.2 5.0 50 55-108 113-170 (193)
127 2dgv_A HnRNP M, heterogeneous 45.7 42 0.0014 19.4 7.3 59 53-115 10-76 (92)
128 3tyt_A Heterogeneous nuclear r 45.1 71 0.0024 22.2 6.3 58 52-113 5-68 (205)
129 2do4_A Squamous cell carcinoma 44.9 47 0.0016 19.6 7.0 58 52-113 18-84 (100)
130 2jvo_A Nucleolar protein 3; nu 44.9 51 0.0017 20.1 5.3 55 54-112 34-90 (108)
131 3bs9_A Nucleolysin TIA-1 isofo 44.8 42 0.0014 19.1 5.7 51 53-107 8-67 (87)
132 2xnq_A Nuclear polyadenylated 44.6 48 0.0016 19.6 7.1 49 54-106 25-75 (97)
133 3ucg_A Polyadenylate-binding p 44.1 44 0.0015 19.1 5.6 45 69-113 20-73 (89)
134 3md3_A Nuclear and cytoplasmic 43.9 62 0.0021 21.0 5.7 56 55-114 4-68 (166)
135 3ex7_B RNA-binding protein 8A; 43.9 57 0.0019 20.3 8.0 59 54-116 25-93 (126)
136 2fy1_A RNA-binding motif prote 43.8 56 0.0019 20.2 6.1 60 53-116 9-77 (116)
137 1whv_A Poly(A)-specific ribonu 43.4 36 0.0012 20.8 3.8 39 68-106 28-67 (100)
138 3n9u_C Cleavage and polyadenyl 43.0 70 0.0024 21.1 6.2 39 69-107 69-118 (156)
139 1l3k_A Heterogeneous nuclear r 42.9 65 0.0022 21.7 5.8 56 53-112 15-79 (196)
140 1oo0_B CG8781-PA, drosophila Y 42.6 54 0.0019 19.8 7.2 49 54-106 29-86 (110)
141 2dh8_A DAZ-associated protein 42.0 54 0.0019 19.6 5.3 58 52-113 17-83 (105)
142 2cqd_A RNA-binding region cont 41.9 58 0.002 19.9 6.2 52 53-108 19-79 (116)
143 1p1t_A Cleavage stimulation fa 41.7 54 0.0018 19.5 5.8 49 54-106 11-68 (104)
144 1jmt_A Splicing factor U2AF 35 41.5 58 0.002 19.7 5.7 46 71-116 42-97 (104)
145 2e5h_A Zinc finger CCHC-type a 41.4 51 0.0018 19.1 6.7 51 52-106 17-76 (94)
146 2bz2_A Negative elongation fac 41.1 64 0.0022 20.2 6.1 56 54-115 42-101 (121)
147 2dnm_A SRP46 splicing factor; 40.6 57 0.0019 19.4 6.4 59 53-115 15-83 (103)
148 3r27_A HnRNP L, heterogeneous 40.6 61 0.0021 19.7 7.1 54 49-106 19-75 (100)
149 2ywk_A Putative RNA-binding pr 39.9 55 0.0019 19.0 5.4 50 53-106 18-75 (95)
150 2qfj_A FBP-interacting repress 39.4 90 0.0031 21.4 7.5 57 54-114 31-97 (216)
151 1x5p_A Negative elongation fac 39.3 58 0.002 19.1 5.1 49 53-107 17-68 (97)
152 2kxn_B Transformer-2 protein h 39.3 72 0.0024 20.2 8.5 59 52-114 47-115 (129)
153 1wf0_A TDP-43, TAR DNA-binding 39.1 39 0.0013 19.4 3.6 48 54-105 8-59 (88)
154 4a8x_A RNA-binding protein wit 39.0 54 0.0018 18.6 6.6 56 54-113 7-73 (88)
155 1rk8_A CG8781-PA, CG8781-PA pr 38.6 84 0.0029 20.8 6.3 55 54-112 75-139 (165)
156 2ghp_A U4/U6 snRNA-associated 38.4 77 0.0026 23.2 5.9 61 52-116 42-109 (292)
157 3md1_A Nuclear and cytoplasmic 38.4 53 0.0018 18.4 5.4 44 69-112 15-68 (83)
158 2cph_A RNA binding motif prote 38.2 63 0.0022 19.3 8.9 61 52-116 16-88 (107)
159 2jrs_A RNA-binding protein 39; 38.2 66 0.0023 19.5 7.2 58 54-115 29-96 (108)
160 4f02_A Polyadenylate-binding p 38.2 86 0.0029 21.7 5.9 52 52-107 16-76 (213)
161 3pgw_S U1-70K; protein-RNA com 38.0 1.1E+02 0.0038 24.4 7.0 57 53-113 104-170 (437)
162 3p5t_L Cleavage and polyadenyl 37.7 59 0.002 18.7 4.4 58 55-116 5-74 (90)
163 2cpf_A RNA binding motif prote 37.4 62 0.0021 18.9 6.4 57 53-113 7-76 (98)
164 1p27_B RNA-binding protein 8A; 37.2 66 0.0023 19.2 7.5 57 54-114 26-92 (106)
165 1x5u_A Splicing factor 3B subu 36.8 67 0.0023 19.1 8.3 60 53-116 17-86 (105)
166 2dnp_A RNA-binding protein 14; 36.0 63 0.0022 18.6 7.4 58 52-113 10-69 (90)
167 2dgt_A RNA-binding protein 30; 36.0 64 0.0022 18.6 7.0 58 52-113 11-70 (92)
168 1wex_A Hypothetical protein (r 35.2 75 0.0026 19.2 6.8 51 52-106 16-69 (104)
169 2xs2_A Deleted in azoospermia- 35.0 35 0.0012 20.3 3.0 49 54-106 12-68 (102)
170 3mdf_A Peptidyl-prolyl CIS-tra 34.9 62 0.0021 18.2 7.2 51 52-106 8-67 (85)
171 2j76_E EIF-4B, EIF4B, eukaryot 34.6 67 0.0023 19.0 4.3 55 55-114 23-87 (100)
172 2cpz_A CUG triplet repeat RNA- 34.5 78 0.0027 19.2 6.0 58 52-113 26-93 (115)
173 1wi8_A EIF-4B, eukaryotic tran 34.1 75 0.0026 18.9 6.1 60 49-113 13-82 (104)
174 2d9p_A Polyadenylate-binding p 33.9 75 0.0026 18.8 6.7 62 50-115 14-83 (103)
175 1ufw_A Synaptojanin 2; RNP dom 33.8 80 0.0027 19.1 4.3 47 66-112 35-82 (95)
176 2cq0_A Eukaryotic translation 33.8 42 0.0015 20.0 3.3 52 52-107 16-76 (103)
177 1wf1_A RNA-binding protein RAL 33.2 81 0.0028 19.0 6.0 58 53-113 29-88 (110)
178 2kvi_A Nuclear polyadenylated 33.0 75 0.0026 18.6 6.1 59 53-115 12-73 (96)
179 2cq3_A RNA-binding protein 9; 33.0 78 0.0027 18.7 7.2 57 53-113 17-81 (103)
180 1h2v_Z 20 kDa nuclear CAP bind 32.7 1E+02 0.0035 20.0 5.8 58 52-113 40-107 (156)
181 2khc_A Testis-specific RNP-typ 32.5 87 0.003 19.1 5.0 49 55-107 44-101 (118)
182 2dhg_A TRNA selenocysteine ass 32.3 80 0.0027 18.7 8.1 54 50-107 8-70 (104)
183 2ytc_A PRE-mRNA-splicing facto 32.3 70 0.0024 18.0 7.2 51 53-107 14-67 (85)
184 2ki2_A SS-DNA binding protein 32.3 73 0.0025 18.2 4.8 48 55-107 5-61 (90)
185 1x4f_A Matrin 3; structural ge 32.0 48 0.0016 20.6 3.3 51 52-106 26-80 (112)
186 2cpy_A RNA-binding protein 12; 31.5 47 0.0016 20.4 3.2 53 53-109 17-78 (114)
187 2dis_A Unnamed protein product 31.4 86 0.0029 18.7 6.6 51 53-107 10-71 (109)
188 2cpj_A Non-POU domain-containi 31.1 83 0.0028 18.4 5.4 59 53-115 17-79 (99)
189 2d9o_A DNAJ (HSP40) homolog, s 31.0 90 0.0031 18.8 6.9 40 68-107 30-73 (100)
190 2dha_A FLJ20171 protein; RRM d 30.6 66 0.0022 20.3 3.8 54 53-110 25-90 (123)
191 1o5h_A Formiminotetrahydrofola 29.4 1E+02 0.0035 21.8 4.9 61 167-230 19-80 (214)
192 2err_A Ataxin-2-binding protei 29.0 98 0.0034 18.7 5.1 49 54-106 32-87 (109)
193 3pgw_A U1-A; protein-RNA compl 28.9 1.6E+02 0.0056 21.2 6.8 63 52-114 10-79 (282)
194 2cpx_A Hypothetical protein FL 28.9 99 0.0034 18.7 5.4 60 52-115 26-95 (115)
195 2div_A TRNA selenocysteine ass 28.8 91 0.0031 18.2 6.6 61 52-116 10-81 (99)
196 2dnq_A RNA-binding protein 4B; 28.3 88 0.003 17.9 8.0 61 52-116 9-71 (90)
197 1jdm_A Sarcolipin; helix, memb 28.2 35 0.0012 15.3 1.5 10 18-27 14-23 (31)
198 2cq2_A Hypothetical protein LO 28.2 1.1E+02 0.0038 19.0 7.6 55 49-107 23-82 (114)
199 1x4d_A Matrin 3; structural ge 28.1 1E+02 0.0035 18.6 6.2 54 50-106 14-70 (102)
200 2lea_A Serine/arginine-rich sp 27.7 1.2E+02 0.0041 19.2 7.3 50 54-107 50-108 (135)
201 3fgx_A Rbstp2171; structural g 27.4 43 0.0015 21.0 2.3 16 72-87 10-25 (114)
202 2i2y_A Fusion protein consists 27.4 1.3E+02 0.0043 19.4 8.4 59 53-115 75-138 (150)
203 2dit_A HIV TAT specific factor 27.1 1E+02 0.0036 18.6 4.3 47 69-115 40-92 (112)
204 1b7f_A Protein (SXL-lethal pro 27.0 1.3E+02 0.0045 19.4 6.3 56 55-114 7-72 (168)
205 2e5i_A Heterogeneous nuclear r 27.0 1.2E+02 0.0042 19.1 6.4 54 56-113 30-88 (124)
206 1fxl_A Paraneoplastic encephal 26.9 1.3E+02 0.0044 19.3 5.7 56 55-114 6-71 (167)
207 2dnh_A Bruno-like 5, RNA bindi 26.9 1E+02 0.0035 18.2 6.4 51 52-106 16-74 (105)
208 2hgn_A Heterogeneous nuclear r 26.7 83 0.0029 20.4 3.9 58 54-116 49-114 (139)
209 2kn4_A Immunoglobulin G-bindin 26.6 1.3E+02 0.0046 19.4 7.8 59 53-115 72-140 (158)
210 2dgp_A Bruno-like 4, RNA bindi 26.5 1.1E+02 0.0036 18.2 7.2 50 53-106 15-73 (106)
211 3ctr_A Poly(A)-specific ribonu 26.3 38 0.0013 20.8 1.9 39 68-106 18-57 (101)
212 2p22_C Protein SRN2; endosome, 26.1 1.7E+02 0.0057 20.4 6.9 58 137-200 110-167 (192)
213 2x1f_A MRNA 3'-END-processing 26.0 1E+02 0.0035 17.9 6.7 48 55-106 6-62 (96)
214 1x4g_A Nucleolysin TIAR; struc 24.8 1.2E+02 0.004 18.2 7.4 51 53-107 27-80 (109)
215 1x4h_A RNA-binding protein 28; 23.9 1.2E+02 0.0042 18.0 7.8 52 52-107 16-76 (111)
216 1x5s_A Cold-inducible RNA-bind 23.9 1.2E+02 0.004 17.8 8.2 61 52-116 13-83 (102)
217 2e5g_A U6 snRNA-specific termi 23.6 1.1E+02 0.0039 17.6 5.9 56 54-113 11-70 (94)
218 2cqb_A Peptidyl-prolyl CIS-tra 23.4 1.2E+02 0.0041 17.8 5.8 57 52-112 13-79 (102)
219 1x4a_A Splicing factor, argini 23.2 1.3E+02 0.0043 18.0 7.6 50 53-106 24-79 (109)
220 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.1 1.5E+02 0.005 18.6 7.8 49 55-107 67-124 (140)
221 2dgo_A Cytotoxic granule-assoc 22.9 1.3E+02 0.0046 18.1 6.7 51 53-107 17-76 (115)
222 1wez_A HnRNP H', FTP-3, hetero 22.5 1.3E+02 0.0045 17.9 4.1 59 53-116 17-83 (102)
223 2cqi_A Nucleolysin TIAR; RNA r 22.3 1.3E+02 0.0044 17.7 7.5 51 52-106 16-73 (103)
224 3q2s_C Cleavage and polyadenyl 21.9 1.5E+02 0.0052 21.0 4.8 48 55-106 72-130 (229)
225 2lxi_A RNA-binding protein 10; 21.6 1.3E+02 0.0044 17.4 4.6 39 69-107 15-63 (91)
226 2qv6_A MJ0145, GTP cyclohydrol 21.5 1.3E+02 0.0043 22.3 4.3 36 70-106 164-202 (268)
227 3b98_A Prostaglandin I2 syntha 21.5 2.1E+02 0.0072 22.4 6.1 26 193-218 150-175 (475)
228 1tt9_A Formimidoyltransferase- 21.3 1.5E+02 0.0051 24.5 5.0 63 165-230 337-400 (541)
229 2e44_A Insulin-like growth fac 20.9 1.3E+02 0.0045 17.3 9.0 60 52-115 16-82 (96)
230 1b35_D CRPV, protein (cricket 20.7 25 0.00085 18.2 0.3 10 52-61 30-39 (57)
231 3ns6_A Eukaryotic translation 20.3 1.4E+02 0.0049 17.5 6.9 60 54-113 9-80 (100)
232 2db1_A Heterogeneous nuclear r 20.2 1.3E+02 0.0046 18.4 3.8 53 54-110 20-83 (118)
233 1ghh_A DINI, DNA-damage-induci 20.1 1.4E+02 0.0049 17.4 3.8 37 70-106 24-68 (81)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.96 E-value=8e-28 Score=197.22 Aligned_cols=179 Identities=24% Similarity=0.366 Sum_probs=145.1
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||||.++|++||++++...++++..+.+|+++||+|+++++|+.++++|+||+++++++.++...|.+|+.......++
T Consensus 9 ~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~~~ 88 (494)
T 3swz_A 9 YPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIAS 88 (494)
T ss_dssp ---CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHHHT
T ss_pred CCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHHhc
Confidence 56677789999999988643578999999999999999999999999999999999999998888999888776555555
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcCh--hHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSN--RRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.+..+++++.+|+.|+++||++.+ .|+. ..++.+.+.+.+++..+++.+.+ .. +.++|+...+..+++|
T Consensus 89 ~~~~gl~~~~~g~~wr~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~--~~~vd~~~~~~~~t~d 159 (494)
T 3swz_A 89 NNRKGIAFADSGAHWQLHRRLAMA-TFALFKDGDQKLEKIICQEISTLCDMLAT------HN--GQSIDISFPVFVAVTN 159 (494)
T ss_dssp TTTCSSSSSCSSHHHHHHHHHHHH-HTTTTSSSTTCHHHHHHHHHHHHHHHHHH------TT--TEEECCHHHHHHHHHH
T ss_pred cCCCCeEeCCCCHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHH------cC--CCcccHHHHHHHHHHH
Confidence 444566677679999999999999 7874 45778899999999999998842 22 5689999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHHHH
Q 048689 204 IILRIIAGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 204 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
+|+.++||.+++..++....+.+..+.+..
T Consensus 160 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 189 (494)
T 3swz_A 160 VISLICFNTSYKNGDPELNVIQNYNEGIID 189 (494)
T ss_dssp HHHHHHHSCCCCTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999987655555444444444433
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=194.23 Aligned_cols=180 Identities=21% Similarity=0.349 Sum_probs=129.3
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. ++++..+.+|+++||+||++++|+.++++++||+++++|+.++...|.+++.........
T Consensus 10 ~pPgP~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~ 87 (507)
T 3pm0_A 10 KPPGPFAWPLIGNAAAVG--QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVS 87 (507)
T ss_dssp --------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHHGG
T ss_pred CCcCCCCCCeeCchhhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHhhc
Confidence 566677899999999997 799999999999999999999999999999999999999988888888887664433333
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHH------HHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRL------EKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEG 199 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 199 (239)
.+.+++++.+|+.|+++||++.+ .|+.... +.+.+.+.+++.++++.+.+. ...+.++|+.+++.+
T Consensus 88 -~g~~l~~~~~g~~w~~~R~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~~~vd~~~~~~~ 159 (507)
T 3pm0_A 88 -GGRSMAFGHYSEHWKVQRRAAHS-MMRNFFTRQPRSRQVLEGHVLSEARELVALLVRG------SADGAFLDPRPLTVV 159 (507)
T ss_dssp -GGTCSSSSCSSHHHHHHHHHHHH-HHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHT------TGGGCCBCCHHHHHH
T ss_pred -CCCceEECCCChHHHHHHHHHHH-HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh------cccCCCcChHHHHHH
Confidence 22356566679999999999998 6654333 448899999999999999542 122568999999999
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhc
Q 048689 200 TVLDIILRIIAGKRYTSQSQEVNDWQQQITKFTALS 235 (239)
Q Consensus 200 ~~~dii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~ 235 (239)
+++|+++.++||.+++..+++..++.+.+.+++..+
T Consensus 160 ~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~ 195 (507)
T 3pm0_A 160 AVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTV 195 (507)
T ss_dssp HHHHHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999998876666666655555555443
No 3
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.94 E-value=3.5e-27 Score=192.94 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=131.6
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhC-CcccCCCCCchhhhhh
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTN-DKAFAGRPKTMATELL 124 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~-~~~~~~~~~~~~~~~~ 124 (239)
+| +|+++|++||++.+. ++++.++.+|+++||+|+++++|+.++|+++||++++++|.++ ...|.+++........
T Consensus 16 ~P-GP~~~PliGn~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~ 92 (485)
T 3nxu_A 16 IP-GPTPLPFLGNILSYH--KGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFM 92 (485)
T ss_dssp CC-CCCCBTTTBTGGGGG--GCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGG
T ss_pred CC-CCCCcCeecCcHHhh--cChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccccc
Confidence 55 455799999999997 7899999999999999999999999999999999999999876 4667666544332222
Q ss_pred cCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 125 GYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 125 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
+ .++ +..+|+.|+++||++++ +|++.+++.+.+.+.+++.++++.+.+.. ..+.++|+.+++..+++|+
T Consensus 93 ~---~~l-~~~~g~~w~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~~------~~g~~~d~~~~~~~~~~dv 161 (485)
T 3nxu_A 93 K---SAI-SIAEDEEWKRLRSLLSP-TFTSGKLKEMVPIIAQYGDVLVRNLRREA------ETGKPVTLKDVFGAYSMDV 161 (485)
T ss_dssp G---GST-TTCCHHHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTCCEEHHHHHHHHHHHH
T ss_pred c---cCc-cccCCcHHHHHHhhcCh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCcCcHHHHHHHHHHHH
Confidence 2 233 34469999999999998 99999999999999999999999995431 1145899999999999999
Q ss_pred HHHHHhcccccC
Q 048689 205 ILRIIAGKRYTS 216 (239)
Q Consensus 205 i~~~~fG~~~~~ 216 (239)
|+.++||.+++.
T Consensus 162 i~~~~fG~~~~~ 173 (485)
T 3nxu_A 162 ITSTSFGVNIDS 173 (485)
T ss_dssp HHHHHHSCCCCG
T ss_pred HHHHHcCCcccc
Confidence 999999998875
No 4
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.94 E-value=1.3e-26 Score=190.45 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=128.4
Q ss_pred CCCCCccccceeeccccCC--CCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch-hhh
Q 048689 46 APEAGGAWPLIGHLHILRG--SEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-ATE 122 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~~ 122 (239)
.||+|+++|++||++++.. ....+..+.+|+++||||+++++|+.++++++||+++++++++ ..|++++... ...
T Consensus 46 ~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~~~~ 123 (503)
T 3s79_A 46 SIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKLGLQ 123 (503)
T ss_dssp CCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHHHHH
T ss_pred CCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhhhhh
Confidence 4556668999999988751 0235568899999999999999999999999999999999953 4566665442 223
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
..+..+.+++++.+|+.|+++||++.+ +|+...++.+.+.+.+++.++++.+.+ ..+.+.++|+.+++..+++
T Consensus 124 ~~~~~~~~~~~~~~g~~w~~~Rr~~~~-~f~~~~l~~~~~~~~~~~~~~l~~l~~------~~~~~~~vdl~~~~~~~~~ 196 (503)
T 3s79_A 124 CIGMHEKGIIFNNNPELWKTTRPFFMK-ALSGPGLVRMVTVCAESLKTHLDRLEE------VTNESGYVDVLTLLRRVML 196 (503)
T ss_dssp HHTCTTSSSTTCCCHHHHHHHHHHHHH-HTSTHHHHHHHHHHHHHHHHHHTTGGG------TBCTTSCBCHHHHHHHHHH
T ss_pred hhccCCCceeeCCCccHHHHHHHhhhH-hhChHHHHHHHHHHHHHHHHHHHHHHH------HhcCCCeEcHHHHHHHHHH
Confidence 333333455666679999999999998 999999999999999999998887732 2122458999999999999
Q ss_pred HHHHHHHhccccc
Q 048689 203 DIILRIIAGKRYT 215 (239)
Q Consensus 203 dii~~~~fG~~~~ 215 (239)
|+++.++||.+++
T Consensus 197 ~vi~~~~fG~~~~ 209 (503)
T 3s79_A 197 DTSNTLFLRIPLD 209 (503)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHcCcccC
Confidence 9999999999875
No 5
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.94 E-value=5.2e-26 Score=185.66 Aligned_cols=178 Identities=19% Similarity=0.305 Sum_probs=139.6
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELL 124 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~ 124 (239)
+.||||+++|++||++++.. ++++..+.+|+++|||||++++|+.++|+|+||+++++||.+++..|+.|+.......+
T Consensus 10 kLPPGP~~lP~iGn~~~~~~-~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~~~ 88 (479)
T 3tbg_A 10 KLPPGPLPLPGLGNLLHVDF-QNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQIL 88 (479)
T ss_dssp CCCCCSCCBTTTBTGGGCCT-TSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGGGG
T ss_pred CCCCCCCCcCcccchHhhcC-CCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHHHh
Confidence 36777889999999998853 68899999999999999999999999999999999999999888889888876555544
Q ss_pred cCC--cceEEecCCCchhHHHHHHHHHhhcChhHHHH--hHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 125 GYN--FLVIGFAPYGNYWRQSRKIATIELLSNRRLEK--LKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 125 ~~~--~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
+.+ ..+++++.+|+.|+++|+.+.+ .|+...+.. +.+.+......+.+.+ .... +..+|+...+..+
T Consensus 89 ~~~~~~~~~~~~~~g~~w~~~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~--~~~~~~~~~~~~~ 159 (479)
T 3tbg_A 89 GFGPRSQGVFLARYGPAWREQRRFSVS-TLRNLGLGKKSLEQWVTEEAACLCAAF------ANHS--GRPFRPNGLLDKA 159 (479)
T ss_dssp TCBTTBCCSTTCCSSHHHHHHHHHHHH-HHHHTTSTTCHHHHHHHHHHHHHHHHH------HTTT--TCCBCTHHHHHHH
T ss_pred ccCCCCCceeeCCCCHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHHHHH------Hhcc--CCcccHHHHHHHH
Confidence 332 2345666779999999999998 787766643 3455555555555555 2222 4589999999999
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 201 VLDIILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 201 ~~dii~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
++|+++.++||.+++..+.+...+.+......
T Consensus 160 ~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T 3tbg_A 160 VSNVIASLTCGRRFEYDDPRFLRLLDLAQEGL 191 (479)
T ss_dssp HHHHHHHHHHSCCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccccchhhhhhhhhhhhhh
Confidence 99999999999999887666655555554443
No 6
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.94 E-value=7.4e-26 Score=184.67 Aligned_cols=177 Identities=18% Similarity=0.285 Sum_probs=140.7
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELL 124 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~ 124 (239)
..||+|.++|++||++++.. ++++..+.+|+++||+|+++++|+.++++++||+++++||.++...|.+++.......+
T Consensus 10 ~lpPgP~~~PliG~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~~~ 88 (476)
T 3e6i_A 10 KLPPGPFPLPIIGNLFQLEL-KNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAH 88 (476)
T ss_dssp CCCCCCCCBTTTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGGGG
T ss_pred CCCcCCCCcccccChhhhcc-ccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhhee
Confidence 35667778999999999842 78999999999999999999999999999999999999998877788877654333333
Q ss_pred cCCcceEEecCCCchhHHHHHHHHHhhcChhHH--HHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 125 GYNFLVIGFAPYGNYWRQSRKIATIELLSNRRL--EKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 125 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
..+ +++++ +|+.|+++||++.+ .|+...+ +.+.+.+.+++.++++.+. ... +.++|+.+++..+++
T Consensus 89 ~~~--~l~~~-~g~~w~~~Rr~~~~-~l~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~~d~~~~~~~~~~ 156 (476)
T 3e6i_A 89 RDR--GIIFN-NGPTWKDIRRFSLT-TLRNYGMGKQGNESRIQREAHFLLEALR------KTQ--GQPFDPTFLIGCAPC 156 (476)
T ss_dssp TTS--SSTTC-CSTTHHHHHHHHHH-HHHHTC-CCSHHHHHHHHHHHHHHHHHH------TTT--TSCBCTHHHHTHHHH
T ss_pred cCC--CEEec-CCcHHHHHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHHHHHH------HhC--CCCcChHHHHHHHHH
Confidence 222 45554 59999999999887 7765444 4567889999999999983 222 458999999999999
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHHHHh
Q 048689 203 DIILRIIAGKRYTSQSQEVNDWQQQITKFTAL 234 (239)
Q Consensus 203 dii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 234 (239)
|+|+.++||.+++..+++..++.+.+.+.+..
T Consensus 157 dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 188 (476)
T 3e6i_A 157 NVIADILFRKHFDYNDEKFLRLMYLFNENFHL 188 (476)
T ss_dssp HHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987666666666666665543
No 7
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.93 E-value=1.9e-25 Score=182.30 Aligned_cols=176 Identities=20% Similarity=0.348 Sum_probs=139.7
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+.. ++++..+.+++++||||+++++|+.++++++||+++++|+.++...|.+++.........
T Consensus 11 ~pPgP~~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~ 89 (476)
T 2fdv_A 11 LPPGPTPLPFIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVF 89 (476)
T ss_dssp CCCCCCCBTTTBTGGGCCT-TBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHH
T ss_pred CCCCCCCCcccccHhhcCC-cchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhc
Confidence 4556678999999998842 789999999999999999999999999999999999999976666777665433222222
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHH--HHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRL--EKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.+ .+++++ +|+.|+++|+++.+ +|+...+ +.+.+.+.+++.++++.+.+ .. +.++|+.+++..+++|
T Consensus 90 ~~-~~l~~~-~g~~~~~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~--~~~vd~~~~~~~~~~~ 158 (476)
T 2fdv_A 90 KG-YGVVFS-NGERAKQLRRFSIA-TLRDFGVGKRGIEERIQEEAGFLIDALRG------TG--GANIDPTFFLSRTVSN 158 (476)
T ss_dssp TT-CSSSSC-CHHHHHHHHHHHHH-HHHHTTTTSHHHHHHHHHHHHHHHHHHHH------TT--TCCBCCHHHHHHHHHH
T ss_pred CC-CCeEec-CchHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHh------cC--CCccChHHHHHHHHHH
Confidence 12 345555 69999999999999 8987766 78999999999999999842 22 3589999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHHHH
Q 048689 204 IILRIIAGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 204 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
++++++||.+++..+++..++.+.+.+++.
T Consensus 159 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 188 (476)
T 2fdv_A 159 VISSIVFGDRFDYKDKEFLSLLRMMLGIFQ 188 (476)
T ss_dssp HHHHHHHSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999987655556666665555543
No 8
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.93 E-value=3.4e-25 Score=180.97 Aligned_cols=182 Identities=20% Similarity=0.295 Sum_probs=138.9
Q ss_pred CCCCCCccccceeeccccC---CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--
Q 048689 45 QAPEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-- 119 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-- 119 (239)
.+| +|.++|++||++.+. ..++++..+.+|+++||+|+++++|+.+.|+++||+++++|+.+ +..|.+++...
T Consensus 25 ~~P-GP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~-~~~~~~r~~~~~~ 102 (482)
T 3k9v_A 25 DLP-GPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRT-ESAHPQRLEIKPW 102 (482)
T ss_dssp GCC-CSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHT-CCSSCCCCCCHHH
T ss_pred CCC-CCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHh-cCCCCCCCCchHH
Confidence 455 456899999998773 12578999999999999999999999999999999999999986 45677776432
Q ss_pred -hhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH
Q 048689 120 -ATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE 198 (239)
Q Consensus 120 -~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~ 198 (239)
..........+++++ +|+.|+++||.+.+.++++..++.+.+.+.++++++++.+.+.. .. .++++|+.+++.
T Consensus 103 ~~~~~~~~~~~~l~~~-~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~--~g~~vd~~~~~~ 176 (482)
T 3k9v_A 103 KAYRDHRNEAYGLMIL-EGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELC---DE--RGRIPDLYSELN 176 (482)
T ss_dssp HHHHHHHTCCCCTTTC-CHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHC---CT--TSCCTTHHHHHH
T ss_pred HHHHHhcCCCCCceeC-CCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---hc--CCCCCCHHHHHH
Confidence 111111122344444 69999999999999334888999999999999999999995431 11 255899999999
Q ss_pred HHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHHHHh
Q 048689 199 GTVLDIILRIIAGKRYTSQS----QEVNDWQQQITKFTAL 234 (239)
Q Consensus 199 ~~~~dii~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~ 234 (239)
++++|+|++++||.+++..+ ++..++.+.+..++..
T Consensus 177 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (482)
T 3k9v_A 177 KWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMST 216 (482)
T ss_dssp HHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999985422 3345566666665543
No 9
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.93 E-value=2.5e-25 Score=181.59 Aligned_cols=175 Identities=20% Similarity=0.324 Sum_probs=138.0
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. .++++..+.+++++||||+++++|+.+.++++||+++++|+.++...|.+++.........
T Consensus 11 ~pPgP~~~p~iG~~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~ 89 (476)
T 1po5_A 11 LPPGPSPLPVLGNLLQMD-RKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIF 89 (476)
T ss_dssp CCCCSCCBTTTBTGGGCC-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSCC
T ss_pred CCcCCCCCCccccHHhcc-CCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhhc
Confidence 455666899999999883 2789999999999999999999999899999999999999976666777665432222221
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChh--HHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNR--RLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.+ .+++++ +|+.|+++||++.+ .|++. .++.+.+.+.+++.++++.+.+ .. +.++|+.+.+..+++|
T Consensus 90 ~~-~~l~~~-~g~~w~~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~--~~~~d~~~~~~~~~~~ 158 (476)
T 1po5_A 90 QG-YGVIFA-NGERWRALRRFSLA-TMRDFGMGKRSVEERIQEEARCLVEELRK------SK--GALLDNTLLFHSITSN 158 (476)
T ss_dssp SS-CCCCCS-SHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHHHH------TT--TCCBCCHHHHHHHHHH
T ss_pred CC-CceEec-CCcHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHh------cC--CCccCHHHHHHHHHHH
Confidence 12 345555 69999999999998 88877 5678899999999999999943 22 3589999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 204 IILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 204 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
+|++++||.+++..+++..++.+.+.+.+
T Consensus 159 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~ 187 (476)
T 1po5_A 159 IICSIVFGKRFDYKDPVFLRLLDLFFQSF 187 (476)
T ss_dssp HHHHHHHSSCCCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999988765555555555554443
No 10
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.93 E-value=3.3e-25 Score=181.10 Aligned_cols=178 Identities=20% Similarity=0.300 Sum_probs=140.1
Q ss_pred CCCCCccccceeeccccCCCCc--hHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhh
Q 048689 46 APEAGGAWPLIGHLHILRGSEP--AHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATEL 123 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~--~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~ 123 (239)
.||+|.++|++||++.+.. .. ++..+.+++++||||+++++|+.++++++||+++++++.++...|++++.......
T Consensus 13 lpPgP~~~p~~G~~~~~~~-~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~~~ 91 (481)
T 3czh_A 13 FPPGPPGLPFIGNIYSLAA-SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMK 91 (481)
T ss_dssp CCCCCCCBTTTBHHHHHHH-CSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHHHH
T ss_pred CCCCCCCCcccccHhhcCc-ccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHHHh
Confidence 5566778999999988752 22 89999999999999999999999999999999999999877667877765433332
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHH--HHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRL--EKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTV 201 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 201 (239)
+..+ .+++++.+|+.|+++|+++++ +|+...+ +.+.+.+.+++.++++.+. ... +.++|+.+++.+++
T Consensus 92 ~~~~-~~~~~~~~g~~w~~~R~~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~~d~~~~~~~~~ 161 (481)
T 3czh_A 92 MTKM-GGLLNSRYGRGWVDHRRLAVN-SFRYFGYGQKSFESKILEETKFFNDAIE------TYK--GRPFDFKQLITNAV 161 (481)
T ss_dssp HHTT-CSSTTCCSSHHHHHHHHHHHH-HHHHTTTTSTTHHHHHHHHHHHHHHHHH------TTT--TCCBCCHHHHHHHH
T ss_pred hcCC-CCeEeCCCChHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHH------HcC--CCCcCHHHHHHHHH
Confidence 3222 234555679999999999999 8876544 6788999999999999983 222 45799999999999
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHHHHh
Q 048689 202 LDIILRIIAGKRYTSQSQEVNDWQQQITKFTAL 234 (239)
Q Consensus 202 ~dii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 234 (239)
+|++++++||.+++..+++..++.+.+.+++..
T Consensus 162 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 194 (481)
T 3czh_A 162 SNITNLIIFGERFTYEDTDFQHMIELFSENVEL 194 (481)
T ss_dssp HHHHHHHHHSSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999998876556666666666665543
No 11
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.93 E-value=2.2e-26 Score=188.77 Aligned_cols=161 Identities=16% Similarity=0.257 Sum_probs=126.2
Q ss_pred ccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCc
Q 048689 59 LHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGN 138 (239)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 138 (239)
++++.. ++++..+.+|+++||||+++++|+.++++++||+++++|+.++...|.+++..........+..+++++.+|+
T Consensus 37 l~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~l~~~~~g~ 115 (496)
T 3qz1_A 37 FLHLLQ-PNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSL 115 (496)
T ss_dssp SCTTSS-SCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTTSCTTCCCSSSSCCSH
T ss_pred ccccCC-CcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHHhcCCCCceEECCCCH
Confidence 445532 7899999999999999999999999999999999999999887778888876543333322222566665599
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhcccccCCc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYTSQS 218 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~~~~ 218 (239)
.|+++||++++ .|+...++.+.+.+.+++.++++.+. ... +.++|+.+++..+++|+|++++||. ..+
T Consensus 116 ~w~~~Rr~~~~-~f~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~vd~~~~~~~~~~dvi~~~~fG~---~~~ 183 (496)
T 3qz1_A 116 LWKAHKKLTRS-ALLLGTRSSMEPWVDQLTQEFCERMR------VQA--GAPVTIQKEFSLLTCSIICYLTFGN---KED 183 (496)
T ss_dssp HHHHHHHHHHH-HHHC--CCCHHHHHHHHHHHHHHHHH------TTC--SCCCHHHHHHTHHHHHHTTTTSTTC---CCH
T ss_pred HHHHHHHHHHH-HHhhccHhhHHHHHHHHHHHHHHHHH------hcC--CCccCHHHHHHHHHHHHHHHHhcCC---CCC
Confidence 99999999999 88877778899999999999999993 222 5589999999999999999999998 333
Q ss_pred hhHHHHHHHHHHHH
Q 048689 219 QEVNDWQQQITKFT 232 (239)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (239)
++...+.+.+.+++
T Consensus 184 ~~~~~~~~~~~~~~ 197 (496)
T 3qz1_A 184 TLVHAFHDCVQDLM 197 (496)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHH
Confidence 44455555555443
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.93 E-value=3.5e-25 Score=180.80 Aligned_cols=176 Identities=21% Similarity=0.370 Sum_probs=132.9
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. .++++..+.+++++||||+++++|+.+.++++||+++++|+.++...|.+++.........
T Consensus 12 ~pPgP~~~p~iG~~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 90 (477)
T 1r9o_A 12 LPPGPTPLPVIGNILQIG-IKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERAN 90 (477)
T ss_dssp CCCCSSSCC-----CCBC-HHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTTT
T ss_pred CCCCCCCCceeccHhhcC-CCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhcc
Confidence 455666899999999883 1678999999999999999999988899999999999999976666777655332111111
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChh--HHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNR--RLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.+ .+++++ +|+.|+++||++.+ .|++. .++.+.+.+.+++.++++.+. ... +.++|+.+.+..+++|
T Consensus 91 ~~-~~l~~~-~g~~w~~~Rr~~~~-~~~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~vd~~~~~~~~~~~ 159 (477)
T 1r9o_A 91 RG-FGIVFS-NGKKWKEIRRFSLM-TLRNFGMGKRSIEDRVQEEARCLVEELR------KTK--ASPCDPTFILGCAPCN 159 (477)
T ss_dssp CT-TSSTTC-CHHHHHHHHHHHHH-HHTTSSSCSSCHHHHHHHHHHHHHHHHH------TTT--TSCBCTHHHHHHHHHH
T ss_pred CC-CceEec-CChHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHH------hcC--CCccChHHHHHHHHHH
Confidence 12 245444 69999999999998 88877 457789999999999999993 222 3579999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHHHH
Q 048689 204 IILRIIAGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 204 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
+|++++||.+++..+++...+.+.+.+.+.
T Consensus 160 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 189 (477)
T 1r9o_A 160 VICSIIFHKRFDYKDQQFLNLMEKLNENIK 189 (477)
T ss_dssp HHHHHHHSCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999887655556666666655553
No 13
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=182.15 Aligned_cols=177 Identities=22% Similarity=0.386 Sum_probs=137.1
Q ss_pred CCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCC
Q 048689 48 EAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYN 127 (239)
Q Consensus 48 ~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~ 127 (239)
|+|.++|++||++.+. ++++..+.+++++||||+++++|+.++++++||+++++|+.++...|.+++..........
T Consensus 19 PgP~~~p~~G~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~~- 95 (495)
T 2hi4_A 19 PEPWGWPLLGHVLTLG--KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITD- 95 (495)
T ss_dssp CCCCCBTTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTSTT-
T ss_pred CCCCCCcceeeHHhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhcC-
Confidence 4566799999999887 7899999999999999999999999999999999999999876667877765433322222
Q ss_pred cceEEec-CCCchhHHHHHHHHHhhcCh---hHH---H---HhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH
Q 048689 128 FLVIGFA-PYGNYWRQSRKIATIELLSN---RRL---E---KLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL 197 (239)
Q Consensus 128 ~~~~~~~-~~g~~w~~~Rk~~~~~~f~~---~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 197 (239)
..+++++ .+|+.|+++||++++ +|+. .+. + .+.+.+.+++.++++.+.+.+ .. +.++|+.+++
T Consensus 96 ~~~l~~~~~~g~~w~~~Rr~~~~-~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~--~~~~d~~~~~ 168 (495)
T 2hi4_A 96 GQSLTFSTDSGPVWAARRRLAQN-ALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELM----AG--PGHFDPYNQV 168 (495)
T ss_dssp SCCTTTSSCCSHHHHHHHHHHHH-HHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHH----HT--TSCBCHHHHH
T ss_pred CCCEEEcCCCChHHHHHHHHHHH-HHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhc----cC--CCccchHHHH
Confidence 2345555 369999999999998 6543 222 2 688999999999999995431 11 4579999999
Q ss_pred HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHh
Q 048689 198 EGTVLDIILRIIAGKRYTSQSQEVNDWQQQITKFTAL 234 (239)
Q Consensus 198 ~~~~~dii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 234 (239)
..+++|+|++++||.+++..+++..++.+.+.+++..
T Consensus 169 ~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 205 (495)
T 2hi4_A 169 VVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVET 205 (495)
T ss_dssp HHHHHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998876555555555555555543
No 14
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.92 E-value=1.4e-25 Score=182.39 Aligned_cols=156 Identities=16% Similarity=0.222 Sum_probs=132.0
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--hhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM--ATE 122 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~~~ 122 (239)
.||+++.++|++||++++. ++++.++.+++++|||||++++++.++|+++||+++++++.+++..+.+++... ...
T Consensus 12 ~PP~~~~~lP~iG~~~~~~--~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 12 SPPYIFSPIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCBCCCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCcCeeeeHHHhh--hCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 3555555699999999998 799999999999999999999999999999999999999988777777665432 222
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
..| .+++++.+|+.|+++|+++.+ +|+...++.+.+.+.+++.++++.+ .. +..+|+.+.+..+++
T Consensus 90 ~~g---~~~~~~~~~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~ 155 (461)
T 3ld6_A 90 VFG---KGVAYDVPNPVFLEQKKMLKS-GLNIAHFKQHVSIIEKETKEYFESW------GE----SGEKNVFEALSELII 155 (461)
T ss_dssp HHC---TTSGGGSCHHHHHHHHHHHHH-HSSHHHHHHHHHHHHHHHHHHGGGG------CS----EEEEEHHHHHHHHHH
T ss_pred cCC---CccccCCCcHHHHHHHHhccc-cccHHHHhhhhHHHHHHHHHHHHHH------hh----cCCccHHHHHHHHHH
Confidence 333 235566679999999999999 9999999999999999999888887 33 237899999999999
Q ss_pred HHHHHHHhcccccC
Q 048689 203 DIILRIIAGKRYTS 216 (239)
Q Consensus 203 dii~~~~fG~~~~~ 216 (239)
++++.++||.++..
T Consensus 156 ~~i~~~~fG~~~~~ 169 (461)
T 3ld6_A 156 LTASHCLHGKEIRS 169 (461)
T ss_dssp HHHHHHHTCHHHHH
T ss_pred HHHHHHHcCcchhh
Confidence 99999999998765
No 15
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.92 E-value=6.1e-25 Score=178.01 Aligned_cols=171 Identities=12% Similarity=0.178 Sum_probs=137.8
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchh-hh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMA-TE 122 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~-~~ 122 (239)
.||++|.++|++||++.+. ++++.++.+|+++|| +||++++++.++++++||+++++++.++...|++++.... ..
T Consensus 4 ~PPg~p~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 4 LPPVYPVTVPILGHIIQFG--KSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CCCBCCCCSTTTBTHHHHH--HCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCcchhccHHHHc--cCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 4666676799999999998 789999999999999 9999999999999999999999999877777777765432 23
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHH-HHHhhcccCCCCCCccccchHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQ-RLYKNCISSSSSRKVVSVEMIHWLEGTV 201 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 201 (239)
..+. +++++.+|+.|+++|+++.+ .|+...++.+.+.+.+++.++++ .+ .. . +.++|+.+++..++
T Consensus 82 ~~g~---~~~~~~~~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~ll~~~~------~~-~--~~~vd~~~~~~~~~ 148 (450)
T 3gw9_A 82 VFGE---GVAYAAPYPRMREQLNFLAE-ELTIAKFQNFVPAIQHEVRKFMAANW------DK-D--EGEINLLEDCSTMI 148 (450)
T ss_dssp HHCT---TSGGGSCHHHHHHHHHHHHH-TTSGGGCTTHHHHHHHHHHHHHHHHS------CS-S--EEEEEHHHHHHHHH
T ss_pred HhcC---CcccCCCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHh------cc-C--CCcccHHHHHHHHH
Confidence 3442 34455579999999999998 99999999999999999999998 55 32 1 34799999999999
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHH
Q 048689 202 LDIILRIIAGKRYTSQSQEVNDWQQQITKF 231 (239)
Q Consensus 202 ~dii~~~~fG~~~~~~~~~~~~~~~~~~~~ 231 (239)
+|++++++||.+++...+ ..++.+.+..+
T Consensus 149 ~~~i~~~~fG~~~~~~~~-~~~~~~~~~~~ 177 (450)
T 3gw9_A 149 INTACQCLFGEDLRKRLD-ARRFAQLLAKM 177 (450)
T ss_dssp HHHHHHHHSCHHHHHHSC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCcchhhhhh-hHHHHHHHHHH
Confidence 999999999998764211 23444444443
No 16
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.91 E-value=3.7e-23 Score=169.18 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=135.6
Q ss_pred CCCCCCccccceeeccccC---CCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchh-
Q 048689 45 QAPEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMA- 120 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~- 120 (239)
.+|+ |+..++. +++.+. ..++++..+.+|+++||||+++++|+.+.|+++||+++++|+.++ ..|.+++....
T Consensus 10 ~~PG-P~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~~~~ 86 (487)
T 3n9y_A 10 EIPS-PGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLIPPW 86 (487)
T ss_dssp GSCC-SCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCCHHH
T ss_pred hCCC-CCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCCcHH
Confidence 4564 4455644 666552 125789999999999999999999999999999999999999755 46777764421
Q ss_pred --hhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH
Q 048689 121 --TELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE 198 (239)
Q Consensus 121 --~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~ 198 (239)
.........++ ++.+|+.|+++||++++.+|+.+.++.+.+.+.+++.++++.+.+...+... ++.++|+.+++.
T Consensus 87 ~~~~~~~~~~~~l-~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~--~~~~vd~~~~~~ 163 (487)
T 3n9y_A 87 VAYHQYYQRPIGV-LLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGS--GNYSGDISDDLF 163 (487)
T ss_dssp HHHHHHTTCCCCG-GGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTS--SSEEECCHHHHH
T ss_pred HHHHHHccccCCC-ccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhccccc--CCCCccHHHHHH
Confidence 11111122234 4456999999999999845999999999999999999999999654322212 245899999999
Q ss_pred HHHHHHHHHHHhcccccCC----chhHHHHHHHHHHHHH
Q 048689 199 GTVLDIILRIIAGKRYTSQ----SQEVNDWQQQITKFTA 233 (239)
Q Consensus 199 ~~~~dii~~~~fG~~~~~~----~~~~~~~~~~~~~~~~ 233 (239)
++++|+|+.++||.+++.. +.+...+.+.+..++.
T Consensus 164 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (487)
T 3n9y_A 164 RFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFH 202 (487)
T ss_dssp HHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999998642 2334455555555543
No 17
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.91 E-value=1.4e-23 Score=171.00 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=124.4
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
+| +|.++|++||++.+.. ++++..+.+|+++||||+++++++.+.++++||+++++|+.+ ..|.+...........
T Consensus 5 ~P-GP~~~p~iG~l~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~~~~~~~~~ 80 (470)
T 2ij2_A 5 MP-QPKTFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLSQALKFVRD 80 (470)
T ss_dssp CC-CCCCCGGGTTGGGGCS-SCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCCHHHHHHHH
T ss_pred CC-CCCCCCccccHHHHhc-ccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCchhHHHHHHH
Confidence 55 4557999999998853 578889999999999999999999999999999999999953 2353322211111100
Q ss_pred CCcceEEec-CCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHH
Q 048689 126 YNFLVIGFA-PYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDI 204 (239)
Q Consensus 126 ~~~~~~~~~-~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~di 204 (239)
....+++++ .+|+.|+++||++++ +|++..++.+.+.+.+++.++++.+.+ .. .+.++|+.+++..+++|+
T Consensus 81 ~~~~~l~~~~~~g~~w~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~~-~~~~vd~~~~~~~~~~~v 152 (470)
T 2ij2_A 81 FAGDGLFTSWTHEKNWKKAHNILLP-SFSQQAMKGYHAMMVDIAVQLVQKWER------LN-ADEHIEVPEDMTRLTLDT 152 (470)
T ss_dssp HHTTSGGGSCTTSHHHHHHHHHHGG-GGSTTTHHHHHHHHHHHHHHHHHHHHT------CC-TTCCEEHHHHHHHHHHHH
T ss_pred hcCCceEEcCCCchHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHHHHHHHHh------hC-CCCeEEHHHHHHHHHHHH
Confidence 011234444 469999999999998 999999999999999999999999842 11 145899999999999999
Q ss_pred HHHHHhcccccC
Q 048689 205 ILRIIAGKRYTS 216 (239)
Q Consensus 205 i~~~~fG~~~~~ 216 (239)
|+.++||.+++.
T Consensus 153 i~~~~fG~~~~~ 164 (470)
T 2ij2_A 153 IGLCGFNYRFNS 164 (470)
T ss_dssp HHHHHHSCCCCG
T ss_pred HHHHHcCCcccc
Confidence 999999998754
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.90 E-value=4.8e-23 Score=167.22 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=112.5
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchh-hhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMA-TEL 123 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~-~~~ 123 (239)
.||++|.++|++||++.+. .+++..+.+++++||||+++++++.++++++||+++++++.+++..|++++.... ...
T Consensus 5 ~PPg~p~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 5 ALPRVSGGHDEHGHLEEFR--TDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp CCCBCSCCCBTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCccCHHHHh--hChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 3555577899999999987 7899999999999999999999998999999999999999866566766654322 222
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
.+ .++ .. +|+.|+++|+++++ +|++.+++.+.+.+.+++.++++.+ .. +.++|+.+++..+++|
T Consensus 83 ~g---~~~-~~-~~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~~------~~----~~~vd~~~~~~~~~~~ 146 (455)
T 2cib_A 83 FG---EGV-VF-DASPERRKEMLHNA-ALRGEQMKGHAATIEDQVRRMIADW------GE----AGEIDLLDFFAELTIY 146 (455)
T ss_dssp HC--------------------------CCHHHHHHHHHHHHHHHHHHHTTC------CS----EEEEEHHHHHHHHHHH
T ss_pred cC---Ccc-cc-CcHHHHHHHhhhcc-ccCHHHHHHHHHHHHHHHHHHHHHh------CC----CCcEeHHHHHHHHHHH
Confidence 33 133 33 58999999999998 9999999999999999999988877 32 2379999999999999
Q ss_pred HHHHHHhcccccC
Q 048689 204 IILRIIAGKRYTS 216 (239)
Q Consensus 204 ii~~~~fG~~~~~ 216 (239)
++++++||.+++.
T Consensus 147 vi~~~~fG~~~~~ 159 (455)
T 2cib_A 147 TSSACLIGKKFRD 159 (455)
T ss_dssp HHHHHHTCHHHHT
T ss_pred HHHHHHcCCCcch
Confidence 9999999998865
No 19
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.89 E-value=2.7e-23 Score=168.94 Aligned_cols=155 Identities=16% Similarity=0.232 Sum_probs=128.8
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc--hhhhh
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT--MATEL 123 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~~~~~ 123 (239)
||++|.++|++||++.+. ++++.++.+++++||+|+++++++.+.+++++|+++++++.++...+.++... .....
T Consensus 13 PPg~P~~lP~iG~l~~~~--~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 90 (461)
T 3i3k_A 13 PPYIFSPIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPV 90 (461)
T ss_dssp CCBCCCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHH
T ss_pred CCCCCCCCCccccHHhhc--cCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhhhhh
Confidence 444378899999999998 78999999999999999999999999999999999999998766655543322 12223
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
+| .+++++.+|+.|+++||++.+ .|+...++.+.+.+.+++.++++.| .. +..+|+.+.+..++++
T Consensus 91 ~g---~g~~~~~~g~~w~~~Rr~~~~-~f~~~~l~~~~~~~~~~~~~ll~~l------~~----~~~~dl~~~~~~~~~~ 156 (461)
T 3i3k_A 91 FG---KGVAYDVPNPVFLEQKKMLKS-GLNIAHFKQHVSIIEKETKEYFESW------GE----SGEKNVFEALSELIIL 156 (461)
T ss_dssp HC---TTSGGGSCHHHHHHHHHHHHH-HSSHHHHHHHHHHHHHHHHHHGGGG------CS----EEEEEHHHHHHHHHHH
T ss_pred cC---CeeeeCCCcHHHHHHHHHHhh-hhCHHHHHHHHHHHHHHHHHHHHHh------hh----cCCcCHHHHHHHHHHH
Confidence 34 234555569999999999999 8999999999999999999998888 32 2268999999999999
Q ss_pred HHHHHHhcccccC
Q 048689 204 IILRIIAGKRYTS 216 (239)
Q Consensus 204 ii~~~~fG~~~~~ 216 (239)
++++++||.++..
T Consensus 157 ~~~~~~~G~~~~~ 169 (461)
T 3i3k_A 157 TASHCLHGKEIRS 169 (461)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHHccHhhhh
Confidence 9999999988754
No 20
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.89 E-value=2.3e-23 Score=170.66 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=130.6
Q ss_pred CCCCCcc-ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCC-cccCCCCCchhhhh
Q 048689 46 APEAGGA-WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTND-KAFAGRPKTMATEL 123 (239)
Q Consensus 46 ~p~~p~~-~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~~~~~~ 123 (239)
.||+|++ +|++||++.+. ++++.++.+++++||||+++++++.++++|++|+++++++.++. ..+..+........
T Consensus 14 ~PPgp~~~lPliG~~~~~~--~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~~~~ 91 (491)
T 3v8d_A 14 EPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALSAKA 91 (491)
T ss_dssp SCCEEEEEESSTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHHHHH
T ss_pred CCCCCCCCcceeccHHHHh--cCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHHHHh
Confidence 4445555 79999999998 89999999999999999999999999999999999999996543 12333332334444
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
++.+. ....+|+.|+++|+.+.+ +|++..++.+.+.+.+++.++++.+.+. ..........|+.+++..++++
T Consensus 92 ~g~~~---~~~~~g~~~~~~Rr~~~~-~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 164 (491)
T 3v8d_A 92 FGHRS---IDPMDGNTTENINDTFIK-TLQGHALNSLTESMMENLQRIMRPPVSS---NSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HTCCC---CCGGGSSBCCCHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHSCCSSC---GGGGCSCEEEEHHHHHHHHHHH
T ss_pred cCCcc---cccccchhHHHHHHHHHH-HcCccchHHHHHHHHHHHHHHHHhhhhc---ccCCCCCcccCHHHHHHHHHHH
Confidence 55332 333469999999999998 9999999999999999998888754211 1111124578999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHH
Q 048689 204 IILRIIAGKRYTSQSQEVNDWQQQI 228 (239)
Q Consensus 204 ii~~~~fG~~~~~~~~~~~~~~~~~ 228 (239)
+++..+||.+....++....+.+.+
T Consensus 165 ~~~~~~fG~~~~~~~~~~~~~~~~~ 189 (491)
T 3v8d_A 165 AGYLTIFGRDLTRRDTQKAHILNNL 189 (491)
T ss_dssp HHHHHHHCBCCSCGGGHHHHHHHHH
T ss_pred HHHHHHcCccccccchhhhhhHHHH
Confidence 9999999998764333333333333
No 21
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.89 E-value=3.9e-23 Score=167.27 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=121.5
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLG 125 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~ 125 (239)
.||+|.++|++||++.+. .+++ .+.+++++||+|+++++++.+.++++||+++++|+.++...|+.+........++
T Consensus 13 ~pPgp~~~P~iG~~~~~~--~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~g 89 (444)
T 2ve3_A 13 IPPGDFGLPWLGETLNFL--NDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLG 89 (444)
T ss_dssp CCCCCCCBTTTBTHHHHH--HCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCHHHHHHHC
T ss_pred CCCCCCCCCccccHHHHh--cCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhHHHHHHhC
Confidence 455667899999998886 4566 7889999999999999888889999999999999976555565333222233333
Q ss_pred CCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHH
Q 048689 126 YNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDII 205 (239)
Q Consensus 126 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii 205 (239)
. .+++. .+|+.|+++|+++++ +|++++++.+.+.+.+++.++++.| .. +.++|+.+++..+++|++
T Consensus 90 ~--~~l~~-~~g~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l------~~----~~~vd~~~~~~~~~~~vi 155 (444)
T 2ve3_A 90 P--NALAT-QMGEIHRSRRKILYQ-AFLPRTLDSYLPKMDGIVQGYLEQW------GK----ANEVIWYPQLRRMTFDVA 155 (444)
T ss_dssp T--TSGGG-CCHHHHHHHHHHHHG-GGCHHHHHTTHHHHHHHHHHHHHHH------HH----SSEEEHHHHHHHHHHHHH
T ss_pred c--ccccc-CCchHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHh------cC----CCcEeHHHHHHHHHHHHH
Confidence 2 13444 469999999999998 9999999999999999999999998 21 347999999999999999
Q ss_pred HHHHhc
Q 048689 206 LRIIAG 211 (239)
Q Consensus 206 ~~~~fG 211 (239)
++++||
T Consensus 156 ~~~~fG 161 (444)
T 2ve3_A 156 ATLFMG 161 (444)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 999999
No 22
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.89 E-value=4.3e-23 Score=168.01 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=119.6
Q ss_pred CCCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCccc-CCCCCch-hhh
Q 048689 45 QAPEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAF-AGRPKTM-ATE 122 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~-~~~~~~~-~~~ 122 (239)
.+||+|.++|++||++.+. ++++.++.++++ ||||+++++++.++++++||+++++++.++ .| .+.+... ...
T Consensus 23 eppPgP~~~P~iG~~~~~~--~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLA--RDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp BCCEECCCCSTTHHHHHHH--HCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCcccchHHhc--cCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4777888999999999998 789999999988 999999999999999999999999999765 55 3332221 112
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
..+ ..+++. .+|+.|+++|+++++ +|++..++.+.+.+.+++.++++.+ .. +.++|+.+.+..+++
T Consensus 98 ~~g--~~~l~~-~dg~~h~~~R~~l~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~d~~~~~~~~~~ 163 (467)
T 3dbg_A 98 LLG--KEGVAT-ANGPLHRRQRRTIQP-AFRLDAIPAYGPIMEEEAHALTERW------QP----GKTVDATSESFRVAV 163 (467)
T ss_dssp ---------------------CGGGHH-HHSTTTSTTTHHHHHHHHHHHHHHS------CT----TSCEEHHHHHHHHHH
T ss_pred hcC--CCCccc-CCcHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHh------cc----CCcCcHHHHHHHHHH
Confidence 222 123444 469999999999999 9999999999999999999999988 42 348999999999999
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHHH
Q 048689 203 DIILRIIAGKRYTSQSQEVNDWQQQITKFT 232 (239)
Q Consensus 203 dii~~~~fG~~~~~~~~~~~~~~~~~~~~~ 232 (239)
++++.++||.+++. +....+.+.+..++
T Consensus 164 ~vi~~~~~g~~~~~--~~~~~~~~~~~~~~ 191 (467)
T 3dbg_A 164 RVAARCLLRGQYMD--ERAERLCVALATVF 191 (467)
T ss_dssp HHHHHHHSCSSCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccc--hhHHHHHHHHHHHH
Confidence 99999999998764 33344555544443
No 23
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.86 E-value=6.5e-21 Score=154.69 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=114.4
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--hhhhhcC--CcceEEecCCCchhH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM--ATELLGY--NFLVIGFAPYGNYWR 141 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~g~~w~ 141 (239)
+.++..+.+|+++||||+++++|+.+.|+++||+++++||.+ ..+.+++..+ .....+. .+.+++++.+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 678999999999999999999999999999999999999953 3444443221 1111111 112455555799999
Q ss_pred HHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhcccccC
Q 048689 142 QSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 142 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
++||++++ +|+++.++.+.+.+.+++.++++.+.+. ..++.++|+.+++..+++|+++.++||.+++.
T Consensus 88 ~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~ 155 (456)
T 3mdm_A 88 KQRRVIDL-AFSRSSLVSLMETFNEKAEQLVEILEAK------ADGQTPVSMQDMLTYTAMDILAKAAFGMETSM 155 (456)
T ss_dssp HHHHHHGG-GGSHHHHHTTHHHHHHHHHHHHHHHHHT------CSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred HHHhhccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCeeeHHHHHHHHHHHHHHHHHcCCChhh
Confidence 99999998 9999999999999999999999999532 22256899999999999999999999999875
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.85 E-value=1.9e-21 Score=154.75 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=121.9
Q ss_pred ccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCC-Cc-hhhhhhcCCc
Q 048689 51 GAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRP-KT-MATELLGYNF 128 (239)
Q Consensus 51 ~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~-~~-~~~~~~~~~~ 128 (239)
...|++||++.+. .+++..+.+++++||||++ ++++.++++++||+++++++.++ .|.+++ .. ......+
T Consensus 5 ~~~p~iGnl~~~~--~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g--- 76 (389)
T 1n97_A 5 SLREAWPYLKDLQ--QDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTG--- 76 (389)
T ss_dssp CHHHHHHHHHHHH--HCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHC---
T ss_pred ccccccccHHHHh--hChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhC---
Confidence 3579999999987 6899999999999999999 88888999999999999999765 677765 22 1222333
Q ss_pred ceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHH
Q 048689 129 LVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRI 208 (239)
Q Consensus 129 ~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~ 208 (239)
.+++. .+|+.|+++|+++++ +|++.+++.+.+.+.+++.++++.+ . +.++|+.+++..+++|+++++
T Consensus 77 ~~l~~-~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~-----~~~~dl~~~~~~~~~~vi~~~ 143 (389)
T 1n97_A 77 RGLLT-DWGESWKEARKALKD-PFLPKNVRGYREAMEEEARAFFGEW------R-----GEERDLDHEMLALSLRLLGRA 143 (389)
T ss_dssp SSTTT-CCHHHHHHHHHHHCG-GGSHHHHHTTHHHHHHHHHHHHHTC------C-----SCCEEHHHHHHHHHHHHHHHH
T ss_pred Ccccc-CCcHHHHHHHHHhCc-ccCHHHHHHHHHHHHHHHHHHHHHc------c-----CCcCcHHHHHHHHHHHHHHHH
Confidence 23444 469999999999998 9999999999999999999999888 4 238999999999999999999
Q ss_pred Hhccccc
Q 048689 209 IAGKRYT 215 (239)
Q Consensus 209 ~fG~~~~ 215 (239)
+||.+++
T Consensus 144 ~fG~~~~ 150 (389)
T 1n97_A 144 LFGKPLS 150 (389)
T ss_dssp HHSSCCC
T ss_pred HcCCcch
Confidence 9999876
No 25
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.85 E-value=1.8e-20 Score=150.43 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=123.8
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc--hh-hhhhcCCc
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT--MA-TELLGYNF 128 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~~-~~~~~~~~ 128 (239)
.|++||+..+. .+++.++.+++++|| ||+++++++.+.+++++|++++.++ + ...|.++... .. ...++.
T Consensus 8 ~P~lG~~~~~~--~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~g~-- 81 (417)
T 1izo_A 8 DKSLDNSLTLL--KEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLFGV-- 81 (417)
T ss_dssp CCCTTHHHHHH--HHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTTCT--
T ss_pred CCccchHHHHh--hCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhccc--
Confidence 48999999988 789999999999998 9999998888999999999998654 2 3345443221 11 122331
Q ss_pred ceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHH
Q 048689 129 LVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRI 208 (239)
Q Consensus 129 ~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~ 208 (239)
.+++ ..+|+.|+++|+++++ +|++..++.+.+.+.+.+.++++.| .. +.++|+.+.+..+++|+++++
T Consensus 82 ~~l~-~~dg~~h~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~dl~~~~~~~~~~vi~~~ 149 (417)
T 1izo_A 82 NAIQ-GMDGSAHIHRKMLFLS-LMTPPHQKRLAELMTEEWKAAVTRW------EK----ADEVVLFEEAKEILCRVACYW 149 (417)
T ss_dssp TCGG-GCCHHHHHHHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHHH------TT----SSEEEHHHHHHHHHHHHHHHH
T ss_pred ccee-ecCChHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHH------hc----CCCeeHHHHHHHHHHHHHHHH
Confidence 2333 4569999999999999 9999999999999999999999999 43 337999999999999999998
Q ss_pred HhcccccCCchhHHHHHHHHHHHHH
Q 048689 209 IAGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 209 ~fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
||.+.+. .+..++.+.+..++.
T Consensus 150 -~G~~~~~--~~~~~~~~~~~~~~~ 171 (417)
T 1izo_A 150 -AGVPLKE--TEVKERADDFIDMVD 171 (417)
T ss_dssp -HTCCCCT--TTHHHHHHHHHHHHH
T ss_pred -cCCCCCc--hHHHHHHHHHHHHHh
Confidence 6987754 234455555444443
No 26
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.84 E-value=8.4e-21 Score=153.18 Aligned_cols=153 Identities=13% Similarity=0.122 Sum_probs=115.7
Q ss_pred CCCCCccccceeecc-ccCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhh
Q 048689 46 APEAGGAWPLIGHLH-ILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATEL 123 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~-~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~ 123 (239)
.||+|+++|++|++. .+. .+++..+.++ ++||||+++++ ++.++++++||+++++|+.++ .|.+++.......
T Consensus 27 ~~PGP~~~p~lG~~~~~~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~ 101 (436)
T 2cd8_A 27 GTTASPPVLDLGALGQDFA--ADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTPL 101 (436)
T ss_dssp -------CCBHHHHHHHHH--HCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSCC
T ss_pred CCCCCCccccCCCCCcccc--cChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccccc
Confidence 344556899999986 455 6889999999 89999999997 778899999999999999765 5666643111110
Q ss_pred ----hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-H
Q 048689 124 ----LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-E 198 (239)
Q Consensus 124 ----~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~ 198 (239)
... ..+++ ..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.|.+ .. +.++|+.+++ .
T Consensus 102 ~~~~~~~-~~~l~-~~dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~~--~~~vd~~~~~~~ 170 (436)
T 2cd8_A 102 TEAEAAL-NHNML-ESDPPRHTRLRKLVAR-EFTMRRVELLRPRVQEIVDGLVDAMLA------AP--DGRADLMESLAW 170 (436)
T ss_dssp CTTGGGT-CCSGG-GCCTTHHHHHHHHHGG-GSSHHHHHTTHHHHHHHHHHHHHHHHT------CT--TSCEEHHHHTTT
T ss_pred ccccccc-ccccc-ccCchHHHHHHHHhHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh------cc--CCCcchHHHHHH
Confidence 111 12344 4569999999999998 999999999999999999999999932 11 3479999977 5
Q ss_pred HHHHHHHHHHHhccccc
Q 048689 199 GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 199 ~~~~dii~~~~fG~~~~ 215 (239)
.+++|+++. +||.+.+
T Consensus 171 ~~~~~vi~~-~~G~~~~ 186 (436)
T 2cd8_A 171 PLPITVISE-LLGVPEP 186 (436)
T ss_dssp HHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHH-HhCCCHH
Confidence 799999998 7998764
No 27
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.84 E-value=9.9e-21 Score=154.97 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=117.1
Q ss_pred CCCCCcc-ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCC-cccCCCCCchhhhh
Q 048689 46 APEAGGA-WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTND-KAFAGRPKTMATEL 123 (239)
Q Consensus 46 ~p~~p~~-~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~~~~~~ 123 (239)
.||+|++ +|++||++++. ++++..+.+++++||+||++++|+.++++++||+++++++.++. ..+.++........
T Consensus 14 ~pPgp~~~~P~iG~~~~~~--~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~~~~~~ 91 (491)
T 3dax_A 14 EPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKA 91 (491)
T ss_dssp CCCEEEEEESCTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHHHHHHH
T ss_pred CCCcCCCcccchhhHHHHh--hCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHHHHHHH
Confidence 3444444 89999999997 78999999999999999999999999999999999999996543 22222211122223
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
++. +++...+|+.|+++|+.+.+ .|+...++.+.+.+.+.+.+.+++.... .........+|+...+..++++
T Consensus 92 ~g~---~~~~~~~g~~w~~~r~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~~~~i~~ 164 (491)
T 3dax_A 92 FGH---RSIDPMDGNTTENINDTFIK-TLQGHALNSLTESMMENLQRIMRPPVSS---NSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HTC---CCCCGGGTSBCCCHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHC-------------CCEEEEHHHHHHHHHHH
T ss_pred cCC---CcccccchhHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhhccC---CcCCCCceeccHHHHHHHHHHH
Confidence 332 22313458899999999998 8999999998888888777766554210 0001113467899999999999
Q ss_pred HHHHHHhcccccC
Q 048689 204 IILRIIAGKRYTS 216 (239)
Q Consensus 204 ii~~~~fG~~~~~ 216 (239)
+++.++||.+...
T Consensus 165 ~~~~~~fG~~~~~ 177 (491)
T 3dax_A 165 AGYLTIFGRDLTR 177 (491)
T ss_dssp HHHHHHHCBCSTT
T ss_pred HhHHHHcCccccc
Confidence 9999999987754
No 28
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.81 E-value=1.7e-19 Score=144.68 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=122.1
Q ss_pred cceeeccccCCCCchHHHHHHHHHHh-CCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--h-hhhhcCCcc
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKY-GPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM--A-TELLGYNFL 129 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~-~~~~~~~~~ 129 (239)
|++||+..+. .+++.++.+++++| |||+++.+++.+.+++++|+.++ ++.+. ..|+++.... . ...++. .
T Consensus 8 P~iG~~~~~~--~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~~g~--~ 81 (415)
T 3awm_A 8 KGPDETLSLL--ADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTLLGQ--G 81 (415)
T ss_dssp -CCCCHHHHH--HSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTTSCS--S
T ss_pred CccchHHHHH--hChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhccCC--c
Confidence 8999999887 68999999999999 79999998888999999999986 66433 4565443211 1 122221 2
Q ss_pred eEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHH
Q 048689 130 VIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRII 209 (239)
Q Consensus 130 ~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~ 209 (239)
++ +..+|+.|+++|+++++ +|+++.++.+.+.+.+.+.++++.|. + +.++|+.+.+..+++++++++
T Consensus 82 ~l-~~~dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~~~------~----~~~vdl~~~~~~~~~~vi~~~- 148 (415)
T 3awm_A 82 GV-QGLDGETHRHRKQMFMG-LMTPERVRALAQLFEAEWRRAVPGWT------R----KGEIVFYDELHEPLTRAVCAW- 148 (415)
T ss_dssp SG-GGCCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHH------H----HSEEEHHHHHHHHHHHHHHHH-
T ss_pred ce-eecCcHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHhhc------c----CCcEeHHHHHHHHHHHHHHHH-
Confidence 23 34569999999999998 99999999999999999999999993 2 237999999999999999998
Q ss_pred hcccccCCchhHHHHHHHHHHHHH
Q 048689 210 AGKRYTSQSQEVNDWQQQITKFTA 233 (239)
Q Consensus 210 fG~~~~~~~~~~~~~~~~~~~~~~ 233 (239)
||.+.+. .+..++.+.+..++.
T Consensus 149 ~G~~~~~--~~~~~~~~~~~~~~~ 170 (415)
T 3awm_A 149 AGVPLPD--DEAGNRAGELRALFD 170 (415)
T ss_dssp HTCCCCG--GGHHHHHHHHHHHHH
T ss_pred cCCCCCc--chHHHHHHHHHHHHH
Confidence 8987654 334445554444443
No 29
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.80 E-value=8.6e-20 Score=149.58 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=120.6
Q ss_pred CCCCCCccccceeeccccC---CCCchHHHHHHHHHHhCC-eeEEEcCCeeE-------EEeCCHHHHHHHHHhCC----
Q 048689 45 QAPEAGGAWPLIGHLHILR---GSEPAHRVLGNMADKYGP-IFTMKLGVKQA-------LVVSNWEIAKECFTTND---- 109 (239)
Q Consensus 45 ~~p~~p~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~v~~p~~i~~il~~~~---- 109 (239)
+.||+|.++|++|+++++. ..++++.++.+++++||+ ||++++++.++ +++.+++..+.++....
T Consensus 28 ~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~k~ 107 (495)
T 3dsk_A 28 RNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKK 107 (495)
T ss_dssp CCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEECS
T ss_pred CCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccccccc
Confidence 4677778999999997763 127999999999999999 99999988777 66777776666653211
Q ss_pred cccCCCCCchhhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 048689 110 KAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVV 189 (239)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 189 (239)
..+........ ..++......+...+|+.|+++|+++.+ .|++.. +.+.+.+.+.+.++++.|.+.+.+ +.
T Consensus 108 ~~~~~~~~~~~-~l~g~~~~~~~~~~~g~~h~~~R~~~~~-~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~------~~ 178 (495)
T 3dsk_A 108 DLLTGTYMPST-ELTGGYRILSYLDPSEPKHEKLKNLLFF-LLKSSR-NRIFPEFQATYSELFDSLEKELSL------KG 178 (495)
T ss_dssp SCTTSSSCCCG-GGGTTCCCGGGCCTTSHHHHHHHHHHHH-HHHHTT-TTHHHHHHHHHHHHHHHHHHHHHH------HS
T ss_pred ccccccCCCCc-cccCCCcceeeeCCCchHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc------CC
Confidence 11212222222 4444222223344569999999999998 898755 899999999999999999543211 34
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccccC
Q 048689 190 SVEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 190 ~~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
++|+.+++..++++++++++||.+.+.
T Consensus 179 ~vdl~~~~~~~~~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 179 KADFGGSSDGTAFNFLARAFYGTNPAD 205 (495)
T ss_dssp SEESHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcch
Confidence 899999999999999999999998765
No 30
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.79 E-value=3.9e-19 Score=142.14 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred CCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-CeeEEEeCCHHHHHHHHHhCC-cccCCCCCchhhh--
Q 048689 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-VKQALVVSNWEIAKECFTTND-KAFAGRPKTMATE-- 122 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~~~~~-- 122 (239)
||||+++|++|++.. +++..+.+|+ +||||+++.++ +.+.+++++++.+++++.++. ..+..++......
T Consensus 3 pPGp~~~P~~g~~~~-----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 3 ASGAPSFPFSRASGP-----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ---CCBSSCCCSSTT-----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCcCC-----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 556667899999764 6788888886 59999999874 566777999999999997653 2233333221100
Q ss_pred --hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 123 --LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 123 --~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
....+..++ +..+|+.|+++||++++ +|++.+++.+.+.+.+++.++++.+.+. ...+.++|+.+.+...
T Consensus 77 ~~~~~~~~~~l-~~~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~~~~d~~~~~~~~ 148 (404)
T 1jfb_A 77 GKQAAKAKPTF-VDMDPPEHMHQRSMVEP-TFTPEAVKNLQPYIQRTVDDLLEQMKQK------GCANGPVDLVKEFALP 148 (404)
T ss_dssp HHHHTTSCCCG-GGCCTTHHHHHHTTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHH------CSTTSCEEHHHHTTTH
T ss_pred ccchhcccCcc-cccCchhHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCccHHHHHHHH
Confidence 011111233 34469999999999998 9999999999999999999999999532 1114579999999999
Q ss_pred HHHHHHHHHhccccc
Q 048689 201 VLDIILRIIAGKRYT 215 (239)
Q Consensus 201 ~~dii~~~~fG~~~~ 215 (239)
+.++++..+||.+++
T Consensus 149 ~~~~i~~~~~G~~~~ 163 (404)
T 1jfb_A 149 VPSYIIYTLLGVPFN 163 (404)
T ss_dssp HHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999999998764
No 31
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.78 E-value=1.7e-18 Score=138.55 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=112.0
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEE----c-CC-eeEEEeCCHHHHHHHH-HhCCcccCCCCCc
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMK----L-GV-KQALVVSNWEIAKECF-TTNDKAFAGRPKT 118 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~----~-~~-~~~v~v~~p~~i~~il-~~~~~~~~~~~~~ 118 (239)
.|++|+++|+. +. ++++..+.+| ++||||++++ + ++ .++++++||+++++++ .++ .+.+++..
T Consensus 11 lppgp~~~p~~-----~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~~ 80 (406)
T 1ued_A 11 LLREPANFQLR-----TN--CDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQF 80 (406)
T ss_dssp EEECCTTTTCE-----ET--TEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCCC
T ss_pred CcccCcccCCC-----CC--CCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccccc
Confidence 45556678876 44 6889999999 9999999999 6 77 8999999999999999 433 34554431
Q ss_pred hhhh-hhcC---CcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchH
Q 048689 119 MATE-LLGY---NFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMI 194 (239)
Q Consensus 119 ~~~~-~~~~---~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 194 (239)
.... .+.. ...+++ ..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.+.+ . +.++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~l~-~~~g~~~~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~--g~~~d~~ 149 (406)
T 1ued_A 81 TQSKSGAHVEAQFVGQIS-TYDPPEHTRLRKMLTP-EFTVRRIRRMEPAIQSLIDDRLDLLEA-------E--GPSADLQ 149 (406)
T ss_dssp ---------CGGGTTCGG-GCCTTHHHHHHHHHGG-GSSHHHHHHHHHHHHHHHHHHHHHHHH-------H--CTTEEHH
T ss_pred cccccccccccccccccc-cCCCHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------c--CCCeeHH
Confidence 1110 0100 112343 4479999999999998 999999999999999999999999932 1 3479999
Q ss_pred HHHHH-HHHHHHHHHHhccccc
Q 048689 195 HWLEG-TVLDIILRIIAGKRYT 215 (239)
Q Consensus 195 ~~~~~-~~~dii~~~~fG~~~~ 215 (239)
+++.. +++|+++. +||.+.+
T Consensus 150 ~~~~~~~~~~vi~~-~~G~~~~ 170 (406)
T 1ued_A 150 GLFADPVGAHALCE-LLGIPRD 170 (406)
T ss_dssp HHTHHHHHHHHHHH-HHTCCHH
T ss_pred HHHHHHhHHHHHHH-HcCCCHH
Confidence 98875 99999995 7998653
No 32
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.77 E-value=2.8e-18 Score=140.68 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=113.3
Q ss_pred CCCCCcc-ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC--chhhh
Q 048689 46 APEAGGA-WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK--TMATE 122 (239)
Q Consensus 46 ~p~~p~~-~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~~~~~ 122 (239)
.||+|++ +|++||++++. ++++.++.+|+++|||||++++|+.++++++||+++++++.++...++.++. .....
T Consensus 19 ~PPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~ 96 (498)
T 3b6h_A 19 EPPLDLGSIPWLGYALDFG--KDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMER 96 (498)
T ss_dssp CCCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHHHHHH
T ss_pred CCCCCCCCCcchhhHHHhc--cCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHHHHHH
Confidence 3444445 89999999987 6789999999999999999999999999999999999999755432332222 12222
Q ss_pred hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHH
Q 048689 123 LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVL 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (239)
.++. +++ ..+|+.| |+++.+ .|+...++.+.+.+.+++.+.++..... . ......+++...+..+++
T Consensus 97 ~~g~---~~~-~~~~~~~---rr~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~--~~~~~~~~l~~~~~~vi~ 163 (498)
T 3b6h_A 97 IFDV---QLP-HYSPSDE---KARMKL-TLLHRELQALTEAMYTNLHAVLLGDATE---A--GSGWHEMGLLDFSYSFLL 163 (498)
T ss_dssp TSCC---CCT-TCCHHHH---HHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHHH---H--CSSCEEEEHHHHHHHHHH
T ss_pred HcCC---Ccc-ccCHHHH---HHHHHH-hhchHhHHHHHHHHHHHHHHHHhhcccc---c--CCCcceecHHHHHHHHHH
Confidence 2332 223 3346665 556666 8999999988888777777776654211 1 111346789999999999
Q ss_pred HHHHHHHhcccccCC
Q 048689 203 DIILRIIAGKRYTSQ 217 (239)
Q Consensus 203 dii~~~~fG~~~~~~ 217 (239)
++++.++||.+++..
T Consensus 164 ~~~~~~~fG~~~~~~ 178 (498)
T 3b6h_A 164 RAGYLTLYGIEALPR 178 (498)
T ss_dssp HHHHHHHHCBSCSSC
T ss_pred HHHHHhhcCcccccc
Confidence 999999999987543
No 33
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.76 E-value=1.8e-18 Score=141.05 Aligned_cols=153 Identities=12% Similarity=0.166 Sum_probs=109.3
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC--chhhhh
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK--TMATEL 123 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~~~~~~ 123 (239)
||+||+++|++||++.+. ++++..+.+++++||||+++++|+.++++++||+++++++.++.. ++.+.. ......
T Consensus 20 pPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~~~~~ 96 (475)
T 3b98_A 20 PPLDKGMIPWLGHALEFG--KDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVLMKRI 96 (475)
T ss_dssp CCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHHHHHT
T ss_pred CCCCCCCcchHHhHHHHh--hCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHHHHHH
Confidence 444443489999999987 789999999999999999999999999999999999999975432 332221 112222
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLD 203 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 203 (239)
++. +++ ..+|+. +|+++.+ +|++..++.+.+.+.+++.++++.+.. .........+++...+..++++
T Consensus 97 ~g~---~~~-~~~~~~---~R~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
T 3b98_A 97 FNM---ILP-SHNPES---EKKRAEM-HFQGASLTQLSNSMQNNLRLLMTPSEM----GLKTSEWKKDGLFNLCYSLLFK 164 (475)
T ss_dssp TCC---CCT-TCCHHH---HHHHHHH-HTSHHHHHHHHHHHHHHHHHHSSTTTT----TCSSCSCEEEEHHHHHHHHHHH
T ss_pred hCC---CCC-CCChHH---HHHHHHH-HcChhhHHHHHHHHHHHHHHHHhhccc----ccCCCCceeehHHHHHHHHHHH
Confidence 332 223 334554 4678888 899999999999988888887776521 1101113356788888888888
Q ss_pred HHHHHHhccc
Q 048689 204 IILRIIAGKR 213 (239)
Q Consensus 204 ii~~~~fG~~ 213 (239)
+++...||.+
T Consensus 165 ~~~~~~~g~~ 174 (475)
T 3b98_A 165 TGYLTVFGAE 174 (475)
T ss_dssp HHHHHHHCCT
T ss_pred HhhhheeCCc
Confidence 8888888854
No 34
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.75 E-value=1.9e-17 Score=132.68 Aligned_cols=150 Identities=12% Similarity=0.121 Sum_probs=111.5
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHh-CCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhh--
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKY-GPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELL-- 124 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~-- 124 (239)
+|+++|.+..-..+. .+++..+.+| ++| |||+++++ ++.+.++++||++++++|.++ .+++++........
T Consensus 9 ~~~~~P~~~~~~~~~--~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~ 83 (412)
T 2zbx_A 9 QTTDAPAFPSNRSCP--YQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPATSP 83 (412)
T ss_dssp CCCSSCBSSCCCSST--TSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCCCSG
T ss_pred CCCCCCCCCCCchhc--cChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccccccc
Confidence 334566553233455 7899999999 788 99999997 888999999999999999753 24444321110100
Q ss_pred ---cC--CcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHH
Q 048689 125 ---GY--NFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEG 199 (239)
Q Consensus 125 ---~~--~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 199 (239)
+. ...++ +..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.|.+ . +.++|+.+.+..
T Consensus 84 ~~~~~~~~~~~l-~~~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~---g~~~d~~~~~~~ 152 (412)
T 2zbx_A 84 RFEAVRESPQAF-IGLDPPEHGTRRRMTIS-EFTVKRIKGMRPEVEEVVHGFLDEMLA------A---GPTADLVSQFAL 152 (412)
T ss_dssp GGC----CCCCG-GGCCTTHHHHHHTTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHH------H---CSCEEHHHHTTT
T ss_pred cccccccccccc-ccCCcHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCccHHHHHHH
Confidence 00 11233 34579999999999998 899999999999999999999999942 1 347999988874
Q ss_pred -HHHHHHHHHHhccccc
Q 048689 200 -TVLDIILRIIAGKRYT 215 (239)
Q Consensus 200 -~~~dii~~~~fG~~~~ 215 (239)
+++|+++. +||.+.+
T Consensus 153 ~~~~~vi~~-~~G~~~~ 168 (412)
T 2zbx_A 153 PVPSMVICR-LLGVPYA 168 (412)
T ss_dssp HHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHH-HcCCCHH
Confidence 99999997 7998764
No 35
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.73 E-value=6.8e-18 Score=137.53 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=115.5
Q ss_pred CCCCCccccceeeccccC---CCC-chHHHHHHHHHHhCC-eeEEEcCC-------eeEEEeCCHHHHHHHHHh----CC
Q 048689 46 APEAGGAWPLIGHLHILR---GSE-PAHRVLGNMADKYGP-IFTMKLGV-------KQALVVSNWEIAKECFTT----ND 109 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~---~~~-~~~~~~~~~~~~yG~-i~~~~~~~-------~~~v~v~~p~~i~~il~~----~~ 109 (239)
.+|+|.++|++|++.++. ... +++.++.+++++||+ ||++++++ ...+++.+++..+.++.. +.
T Consensus 10 ~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~ 89 (473)
T 3dan_A 10 EIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEKK 89 (473)
T ss_dssp CCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEECS
T ss_pred CCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcceecc
Confidence 445667899999998752 115 899999999999999 99999863 345556666655455421 11
Q ss_pred cccCCCCCchhhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 048689 110 KAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVV 189 (239)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 189 (239)
..+........ ...+......+...+|+.|+++|+++.+ .|++ .++.+.+.+.+.+.++++.|.+... ++.
T Consensus 90 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~h~~~R~~~~~-~f~~-~~~~~~~~i~~~~~~ll~~~~~~~~------~~~ 160 (473)
T 3dan_A 90 DLFTGTYMPST-KLTGGYRVLSYLDPSEPRHAQLKNLLFF-MLKN-SSNRVIPQFETTYTELFEGLEAELA------KNG 160 (473)
T ss_dssp SCTTSSSCCCG-GGGTTSCCGGGCCTTSHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------HHS
T ss_pred ccccccccCCc-cccCCCcceeeeCCCcHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhc------cCC
Confidence 12222211111 2333222223344569999999999998 8998 5999999999999999999953211 134
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccccC
Q 048689 190 SVEMIHWLEGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 190 ~~d~~~~~~~~~~dii~~~~fG~~~~~ 216 (239)
++|+.+++..+++++++.++||.+++.
T Consensus 161 ~vdl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 161 KAAFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp CEECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 899999999999999999999998875
No 36
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.73 E-value=7.6e-17 Score=128.92 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=111.0
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEc-CCee-EEEeCCHHHHHHHHHhCCcccCCCCCchhhh----
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQ-ALVVSNWEIAKECFTTNDKAFAGRPKTMATE---- 122 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~-~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~---- 122 (239)
+|+++|+.++ .. .+++.++.+++ +||||+++++ ++.+ .++++||++++++|.+ ..|.+++......
T Consensus 12 ~~~~~p~~~~---~~--~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~ 83 (406)
T 1s1f_A 12 PVRDWPAVDL---PG--SDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVTRLA 83 (406)
T ss_dssp CEEECCCCCC---CT--TCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBCBSS
T ss_pred CCCCCCCCcc---cc--cCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCccccc
Confidence 3335677666 33 68889998885 7999999996 5666 9999999999999974 3576665321111
Q ss_pred h-hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HH
Q 048689 123 L-LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GT 200 (239)
Q Consensus 123 ~-~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~ 200 (239)
. ......++++ .+|+.|+++||++++ +|++..++.+.+.+.+++.++++.|.+ . +.++|+...+. .+
T Consensus 84 ~~~~~~~~~l~~-~dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~----~~~~d~~~~~~~~~ 152 (406)
T 1s1f_A 84 PHFIPARGAVGF-LDPPDHTRLRRSVAA-AFTARGVERVRERSRGMLDELVDAMLR-----A----GPPADLTEAVLSPF 152 (406)
T ss_dssp SSCSSCTTSGGG-CCTTHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHHHHHH-----H----CSSEEHHHHTTTHH
T ss_pred cccccccccccc-CCchHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh-----c----CCCccHHHHHhhHh
Confidence 0 1111234444 469999999999999 899999999999999999999999942 1 33799987764 79
Q ss_pred HHHHHHHHHhccccc
Q 048689 201 VLDIILRIIAGKRYT 215 (239)
Q Consensus 201 ~~dii~~~~fG~~~~ 215 (239)
++|+++. +||.+.+
T Consensus 153 ~~~vi~~-~~G~~~~ 166 (406)
T 1s1f_A 153 PIAVICE-LMGVPAT 166 (406)
T ss_dssp HHHHHHH-HHTCCGG
T ss_pred HHHHHHH-HhCCCHH
Confidence 9999999 6998765
No 37
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.73 E-value=1.4e-16 Score=127.72 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=114.3
Q ss_pred CCCCCCccccce--eeccccCC---CCchHHHHHHHHHHhC--CeeEEE-cCCeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 45 QAPEAGGAWPLI--GHLHILRG---SEPAHRVLGNMADKYG--PIFTMK-LGVKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 45 ~~p~~p~~~p~l--G~~~~~~~---~~~~~~~~~~~~~~yG--~i~~~~-~~~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
+.|++|.+.|.. +.+..+.. ..+++..+.+|+ +|| ||++++ +| +.++++||+++++++. +...|++++
T Consensus 11 ~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~~~~ 86 (415)
T 2zwu_A 11 NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFSSEC 86 (415)
T ss_dssp CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEETTS
T ss_pred ccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccCCCc
Confidence 567667777754 44321110 157899999995 799 999998 54 6899999999999996 445677775
Q ss_pred -Cchhh-hhhcCCcce-EEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccch
Q 048689 117 -KTMAT-ELLGYNFLV-IGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEM 193 (239)
Q Consensus 117 -~~~~~-~~~~~~~~~-~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~ 193 (239)
..... ...+ .+ ++ ..+|+.|+++|+++.+ +|++..++.+.+.+.+++.++++.| ... + ++|+
T Consensus 87 ~~~~~~~~~~~---~~~l~-~~~g~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l------~~~---~-~~d~ 151 (415)
T 2zwu_A 87 PFIPREAGEAY---DFIPT-SMDPPEQRQFRALANQ-VVGMPVVDKLENRIQELACSLIESL------RPQ---G-QCNF 151 (415)
T ss_dssp CSSSHHHHHHC---CCTTT-TCCTTTTHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHHHH------GGG---T-EEEH
T ss_pred ccCCCCccccc---cccCc-cCCCcHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHH------Hhc---C-CccH
Confidence 22211 1112 23 34 4469999999999998 9999999999999999999999999 322 2 7999
Q ss_pred HHHH-HHHHHHHHHHHHhccccc
Q 048689 194 IHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 194 ~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
.+++ ..+++|+++.+ ||.+++
T Consensus 152 ~~~~~~~~~~~vi~~~-~G~~~~ 173 (415)
T 2zwu_A 152 TEDYAEPFPIRIFMLL-AGLPEE 173 (415)
T ss_dssp HHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHHHH-cCCCHH
Confidence 9865 78999999998 999775
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.72 E-value=7.2e-17 Score=128.16 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=107.9
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCC----eeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGV----KQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWR 141 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~ 141 (239)
.+++..+.++ ++||||+++++++ .++++++||++++++++ +...|++++........... .+.++..+|+.|+
T Consensus 12 ~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 88 (384)
T 3oo3_A 12 LDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILA-DHERFSSMRPVDDEADRALL-PGILQAYDPPDHT 88 (384)
T ss_dssp TEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHH-CTTTEECSCCCC-----CCC-TTCGGGCCTTHHH
T ss_pred cChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHh-CchhccCCcccccccccccc-ccccccCCChhHH
Confidence 7899999999 4999999999876 79999999999999994 55678777654322111111 2234555799999
Q ss_pred HHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccccc
Q 048689 142 QSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 142 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~ 215 (239)
++|+.+++ +|++..++.+.+.+.+++.++++.|.+ . +.++|+.+.+...+.+++...+||.+.+
T Consensus 89 ~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~---~~~~d~~~~~~~~~~~~v~~~~~G~~~~ 152 (384)
T 3oo3_A 89 RLRRTVAP-AYSARRMERLRPRIEEIVEECLDDFES------V---GAPVDFVRHAAWPIPAYIACEFLGVPRD 152 (384)
T ss_dssp HHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH------S---CSSEEHHHHTTTHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999998 999999999999999999999999932 1 4589999999988777777778998764
No 39
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.72 E-value=8.4e-17 Score=128.76 Aligned_cols=139 Identities=7% Similarity=0.044 Sum_probs=106.1
Q ss_pred cccCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhh---hcC----CcceE
Q 048689 60 HILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATEL---LGY----NFLVI 131 (239)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~---~~~----~~~~~ 131 (239)
..+. .+++..+.+| ++||||+++++ ++.++++++||++++++|.++ .+.+++....... +.. ...++
T Consensus 20 ~~~~--~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (408)
T 3abb_A 20 RTCP--YQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPL 94 (408)
T ss_dssp CSST--TSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTT
T ss_pred cccc--cCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCcccccccccc
Confidence 3455 7889999999 89999999997 888999999999999999753 2444332100000 000 01133
Q ss_pred EecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHh
Q 048689 132 GFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIA 210 (239)
Q Consensus 132 ~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~f 210 (239)
+ ..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.|.+ . +.++|+.+.+. .+++|+++. +|
T Consensus 95 ~-~~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~---g~~~d~~~~~~~~~~~~vi~~-~~ 162 (408)
T 3abb_A 95 I-GVDDPVHARQRRMLIP-SFGVKRMNAIRPRLQSLVDRLLDDMLA------K---GPGADLVSAFALPVPSVAICE-LL 162 (408)
T ss_dssp T-TCCTTHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH------T---CSCEEHHHHTTTHHHHHHHHH-HH
T ss_pred c-cCCchHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCeehHHHHHHHHHHHHHHH-Hh
Confidence 3 4579999999999999 999999999999999999999999931 1 34799998886 499999998 79
Q ss_pred ccccc
Q 048689 211 GKRYT 215 (239)
Q Consensus 211 G~~~~ 215 (239)
|.+.+
T Consensus 163 G~~~~ 167 (408)
T 3abb_A 163 GVPYG 167 (408)
T ss_dssp TCCGG
T ss_pred CCCHH
Confidence 98764
No 40
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.71 E-value=2e-16 Score=126.98 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=107.4
Q ss_pred CchHHHHHHHHHHhCCeeEEEcC-CeeEEEeCCHHHHHHHHHhCCcccCCCCCch----hhhhh---cCCcceEEecCCC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLG-VKQALVVSNWEIAKECFTTNDKAFAGRPKTM----ATELL---GYNFLVIGFAPYG 137 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~g 137 (239)
.+++..+.+|+++ |||++++++ +.+++++++|+++++++.++ .|++++... ..... +....++ +..+|
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 104 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRTDA 104 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGCCH
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhcCC
Confidence 7899999999998 999999986 58999999999999999754 566543211 11111 0112233 44569
Q ss_pred chhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccccC
Q 048689 138 NYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 138 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~~ 216 (239)
+.|+++|+++++ +|++.+++.+.+.+.+++.++++.+.+ . ++++|+...+ ..+++++++.+ ||.+.+.
T Consensus 105 ~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~--g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 173 (417)
T 3tyw_A 105 PEHTRYRRMLLP-AFTVRRVRAMRPAVQARVDEILDGMLA-------A--GGPVDLVSAYANAVSTSVICEL-LGIPRHD 173 (417)
T ss_dssp HHHHHHHHHHGG-GGCHHHHHHTHHHHHHHHHHHHHHHHH-------H--CSSEEHHHHTHHHHHHHHHHHH-HTCCTTT
T ss_pred cHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------h--CCCcchHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 999999999998 999999999999999999999999942 1 4579999988 57999999997 9988764
No 41
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.70 E-value=4.7e-16 Score=124.30 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=105.6
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch-------hhhhhcCCcceEEecCCCc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-------ATELLGYNFLVIGFAPYGN 138 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~ 138 (239)
.+++..+.++ ++||||+++++++.+++++++|+.+++++.++ ..|++++... .....+ .++ +..+|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l-~~~~g~ 86 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQN---QMM-LFQNQP 86 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHH---TSG-GGCCTT
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhh---cch-hhcCCc
Confidence 6889999888 57999999999999999999999999999865 5677665421 112222 234 445699
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
.|+++||++++ +|++..++.+.+.+.+++.++++.+ .. +..+|+...+ ..+++++++. +||.+.+
T Consensus 87 ~h~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 152 (404)
T 3ejb_B 87 DHRRLRTLASG-AFTPRTTESYQPYIIETVHHLLDQV------QG----KKKMEVISDFAFPLASFVIAN-IIGVPEE 152 (404)
T ss_dssp HHHHHHHHHHG-GGSHHHHHTTHHHHHHHHHHHHHTT------TT----TSEEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred hHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHh------hh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999999998 9999999999999999999999988 43 2378986555 4699999999 4898654
No 42
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.70 E-value=2.2e-16 Score=126.38 Aligned_cols=134 Identities=10% Similarity=0.131 Sum_probs=106.2
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhh-----hhhcCCcceEEecCCCchh
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMAT-----ELLGYNFLVIGFAPYGNYW 140 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~w 140 (239)
.+++..+.++ ++||||+++++++.+.+++++|+++++++.++ .|++++..... ........++ +..+|+.|
T Consensus 20 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h 95 (411)
T 3a4g_A 20 QNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWRHTLPEDQRADMPATPTPMM-ILMDPPDH 95 (411)
T ss_dssp TCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGGGGSCGGGCTTCCSCSSCCG-GGCCTTHH
T ss_pred cCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--CcccccccccccccccccCccccccc-ccCCchHH
Confidence 6899999999 89999999999888999999999999999754 27766532211 1111112234 44579999
Q ss_pred HHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 141 RQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 141 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
+++||++++ +|++..++.+.+.+.+++.++++.| ... .++|+...+ ..+++|+++.+ ||.+.+
T Consensus 96 ~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~~----~~vd~~~~~~~~~~~~vi~~~-~G~~~~ 159 (411)
T 3a4g_A 96 TRLRKLVGR-SFTVRRMNELEPRITEIADGLLAGL------PTD----GPVDLMREYAFQIPVQVICEL-LGVPAE 159 (411)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHS------CSS----SCEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred HHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHH------Hhc----CCccHHHHHHHHhHHHHHHHH-hCCCHH
Confidence 999999998 9999999999999999999999998 432 379997554 68999999975 998765
No 43
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.70 E-value=6.6e-17 Score=130.35 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=113.5
Q ss_pred CCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEE--------cCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc
Q 048689 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMK--------LGVKQALVVSNWEIAKECFTTNDKAFAGRPKT 118 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~--------~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~ 118 (239)
|+.|..++++.....-. ++++..+.++ ++||||+++. +|+.++++|++|+++++++++ ...|++++..
T Consensus 20 p~~~~~~~~~~~~~~~~--~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~ 95 (433)
T 3ivy_A 20 PNLPPGFDFTDPAIYAE--RLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSSYENG 95 (433)
T ss_dssp CCCCTTCCTTCHHHHTT--CCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEESTTTC
T ss_pred CCCCCCCCCCCHHHhhc--CCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccCCccc
Confidence 33444555555443333 6799999999 7799999998 455789999999999999964 4567666543
Q ss_pred hhhh--------hhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccc
Q 048689 119 MATE--------LLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVS 190 (239)
Q Consensus 119 ~~~~--------~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (239)
.... .......+++ ..+|+.|+++||++++ +|++..++.+.+.+.+.+.++++.+. . +.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~------~----~~~ 163 (433)
T 3ivy_A 96 VIPRFKNDIAREDIEVQRFVML-NMDAPHHTRLRKIISR-GFTPRAVGRLHDELQERAQKIAAEAA------A----AGS 163 (433)
T ss_dssp SCCCCCTTCCHHHHHGGGGSGG-GCCTTHHHHHHHHHGG-GSCHHHHHTTHHHHHHHHHHHHHHHH------H----HCE
T ss_pred ccccccccccccccccccCCcc-ccChHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHh------h----CCC
Confidence 2111 1111122344 5569999999999998 99999999999999999999999993 1 237
Q ss_pred cchHHHH-HHHHHHHHHHHHhcccc
Q 048689 191 VEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 191 ~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
+|+...+ ..+++++++++ ||.+.
T Consensus 164 ~d~~~~~~~~~~~~vi~~l-~G~~~ 187 (433)
T 3ivy_A 164 GDFVEQVSCELPLQAIAGL-LGVPQ 187 (433)
T ss_dssp EEHHHHTTSHHHHHHHHHH-HTCCH
T ss_pred eeHHHHHHHHHHHHHHHHH-cCCCH
Confidence 8998887 99999999996 99653
No 44
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.69 E-value=2.6e-16 Score=126.88 Aligned_cols=138 Identities=11% Similarity=0.096 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHhCCcccCCCCCc--h-hhhhhcCCcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTTNDKAFAGRPKT--M-ATELLGYNFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 135 (239)
.+++..+.+|+ +||||++++++ +.++++++||+++++++.++ ..|++++.. . ....++....+++++
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~- 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVL- 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGC-
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccC-
Confidence 46888999996 69999999885 56899999999999999864 467776521 1 111111011234444
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++|+++++ +|++..++.+.+.+.+++.++++.+.+. + .+.++|+.+++ ..+++|+++++ ||.+.
T Consensus 121 dg~~h~~~R~~l~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~-~~~~vd~~~~~~~~~~~~vi~~~-~G~~~ 191 (435)
T 2wm5_A 121 DDPRHQRLRSIVSR-AFTPKVVARIEAAVRDRAHRLVSSMIAN------N-PDRQADLVSELAGPLPLQIICDM-MGIPK 191 (435)
T ss_dssp CTTHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHH------C-TTSEEEHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred CcHHHHHHHHHhHH-hhCHHHHHHHHHHHHHHHHHHHHHHHhc------C-CCCcEehHHHHHHHHHHHHHHHH-cCCCH
Confidence 69999999999999 9999999999999999999999999531 1 13479998766 78999999999 99977
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 192 ~ 192 (435)
T 2wm5_A 192 A 192 (435)
T ss_dssp G
T ss_pred H
Confidence 5
No 45
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.68 E-value=9.6e-16 Score=122.48 Aligned_cols=132 Identities=14% Similarity=0.218 Sum_probs=106.6
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCc--h-----------h-hhh---hcCCc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKT--M-----------A-TEL---LGYNF 128 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~-----------~-~~~---~~~~~ 128 (239)
.+++..+.++ ++||||+++++++.+.+++++|+++++++.++ .|++++.. . . ... .+
T Consensus 14 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (404)
T 1z8o_A 14 VDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFA--- 87 (404)
T ss_dssp SSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHS---
T ss_pred cCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcc---
Confidence 6899999999 89999999999888999999999999999764 56666432 1 1 110 12
Q ss_pred ceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHH
Q 048689 129 LVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILR 207 (239)
Q Consensus 129 ~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~ 207 (239)
.+++ ..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.+ .. +.++|+.+.+ ..+++|+++.
T Consensus 88 ~~l~-~~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~d~~~~~~~~~~~~vi~~ 155 (404)
T 1z8o_A 88 TNMG-TSDPPTHTRLRKLVSQ-EFTVRRVEAMRPRVEQITAELLDEV------GD----SGVVDIVDRFAHPLPIKVICE 155 (404)
T ss_dssp SSGG-GCCTTHHHHHHHHHHT-TSCHHHHHHTHHHHHHHHHHHHHTS------CS----SSEEEHHHHTTTHHHHHHHHH
T ss_pred cccc-cCCCcHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHhh------hh----cCCcchHHHHhHHHHHHHHHH
Confidence 2343 4469999999999998 9999999999999999999999988 43 3379998766 6899999998
Q ss_pred HHhcccccC
Q 048689 208 IIAGKRYTS 216 (239)
Q Consensus 208 ~~fG~~~~~ 216 (239)
+||.+.+.
T Consensus 156 -~~G~~~~~ 163 (404)
T 1z8o_A 156 -LLGVDEKY 163 (404)
T ss_dssp -HTTCCGGG
T ss_pred -HhCCCHHH
Confidence 49987653
No 46
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.68 E-value=1.5e-16 Score=126.98 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=105.3
Q ss_pred CchHHHHHHHHHHh--CCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHH
Q 048689 66 EPAHRVLGNMADKY--GPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQS 143 (239)
Q Consensus 66 ~~~~~~~~~~~~~y--G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 143 (239)
++++..+.+|+++| |||++++.++ +.++++||+.+++++. +...|++++..........+ ...++..+|+.|+++
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 95 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYETGEF-ELMMAGQDDPVHKKY 95 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC----C-CCTTTTCCTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCCCccc-ccCcccCCchHHHHH
Confidence 78999999999999 9999999876 5899999999999994 55577766544221111111 122345579999999
Q ss_pred HHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 144 RKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 144 Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
|+++.+ +|++..++.+.+.+.+++.++++.+ ... ..+|+...+ ..+++++++. +||.+.+
T Consensus 96 R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l------~~~----~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 156 (398)
T 4fb2_A 96 RQLVAK-PFSPEATDLFTEQLRQSTNDLIDAR------IEL----GEGDAATWLANEIPARLTAI-LLGLPPE 156 (398)
T ss_dssp HHHHHT-TTCHHHHHTTHHHHHHHHHHHHHTT------TTT----TEEEHCCCCCTTHHHHHHHH-HTTSCGG
T ss_pred HHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------hhc----CCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999998 9999999999999999999999988 332 257875554 6899999999 7998654
No 47
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.68 E-value=4.3e-16 Score=124.48 Aligned_cols=135 Identities=10% Similarity=0.092 Sum_probs=105.6
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCC--c-hhhhhhcC--CcceEEecCCCch
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPK--T-MATELLGY--NFLVIGFAPYGNY 139 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g~~ 139 (239)
.+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|++++. . .....+.. ...+++ ..+|+.
T Consensus 19 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~ 94 (403)
T 3aba_A 19 FLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLL-WQDEPE 94 (403)
T ss_dssp TSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCT-TCCTTH
T ss_pred cChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccc-cCCchh
Confidence 6788899999 89999999997 888999999999999999753 4666532 1 11000111 123344 456999
Q ss_pred hHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhccccc
Q 048689 140 WRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 140 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~~ 215 (239)
|+++||++++ +|++..++.+.+.+.+++.++++.|.+ . +.++|+...+. .+++|+++. +||.+.+
T Consensus 95 h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 160 (403)
T 3aba_A 95 HTSDRKLLAK-EFTVRRMQALRPNIQRIVDEHLDAIEA-----R----GGPVDLVKTFANAVPSMVISD-LFGVPVE 160 (403)
T ss_dssp HHHHHHHHHH-HSCHHHHHTTHHHHHHHHHHHHHHHHH-----H----CSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-----c----CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999999999 899999999999999999999999942 1 34799987664 799999998 7998764
No 48
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.68 E-value=2.5e-16 Score=126.07 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=105.6
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC--ch----hh---hhhcC-CcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK--TM----AT---ELLGY-NFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~~----~~---~~~~~-~~~~~~~~~ 135 (239)
++++..+.+| ++||||+++++++.+.++++||+++++++.++. +++++. .. .. ...+. ...++ +..
T Consensus 15 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 90 (408)
T 1odo_A 15 ADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM-FTA 90 (408)
T ss_dssp TTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-GGC
T ss_pred CChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-ccc
Confidence 7899999999 999999999988889999999999999997543 333321 11 00 00000 11233 445
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++||++++ +|++..++.+.+.+.+++.++++.|.+. . . +.++|+.+.+. .+++|+++. +||.+.
T Consensus 91 ~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~-~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 161 (408)
T 1odo_A 91 YGPNHRKLRRLVAP-AFSARRVDAMRPAVEAMVTGLVDRLAEL----P-A--GEPVDLRQELAYPLPIAVIGH-LMGVPQ 161 (408)
T ss_dssp CHHHHHHHHHTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHS----C-T--TSCEEHHHHTTTHHHHHHHHH-HHTCCH
T ss_pred CChHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHhh----c-C--CCCcchHHHHhhhhHHHHHHH-HhCCCH
Confidence 69999999999998 9999999999999999999999999431 1 1 34899998887 599999996 799875
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 162 ~ 162 (408)
T 1odo_A 162 D 162 (408)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.67 E-value=1.8e-16 Score=127.60 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=112.0
Q ss_pred ceeeccccC--CC-CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCC-chh----h-h-h
Q 048689 55 LIGHLHILR--GS-EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPK-TMA----T-E-L 123 (239)
Q Consensus 55 ~lG~~~~~~--~~-~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-~~~----~-~-~ 123 (239)
++|++.+.. .. .+++..+.++++ ||||++++. |+.+++++++++.+++++++ ...|++++. ... . . .
T Consensus 11 ~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~~~~~~~~~~~~~ 88 (428)
T 1cpt_A 11 IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGSEILYDQNNEAFM 88 (428)
T ss_dssp HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSCSSCCCHHHHHHH
T ss_pred hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCccccccCCcccccchh
Confidence 888765442 11 368889988877 799999997 67899999999999999964 446777664 221 1 1 2
Q ss_pred ---hcC--C-cceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH
Q 048689 124 ---LGY--N-FLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL 197 (239)
Q Consensus 124 ---~~~--~-~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 197 (239)
.|. . ..+++ ..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.+. .. +.++|+.+.+
T Consensus 89 ~~~~g~~~~~~~~l~-~~~g~~~~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~------~~---~~~~d~~~~~ 157 (428)
T 1cpt_A 89 RSISGGCPHVIDSLT-SMDPPTHTAYRGLTLN-WFQPASIRKLEENIRRIAQASVQRLL------DF---DGECDFMTDC 157 (428)
T ss_dssp HHHTTTSSCSSCCGG-GCCTTHHHHHHHHHHT-TSSHHHHGGGHHHHHHHHHHHHHHHH------TS---SSEEEHHHHT
T ss_pred ccccccccccccccc-cCChHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHH------Hh---CCCeehHHHH
Confidence 321 1 12344 4469999999999998 99999999999999999999999993 22 1378998654
Q ss_pred -HHHHHHHHHHHHhccccc
Q 048689 198 -EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 198 -~~~~~dii~~~~fG~~~~ 215 (239)
..+++|+|+.+ ||.+.+
T Consensus 158 ~~~~~~~vi~~~-fG~~~~ 175 (428)
T 1cpt_A 158 ALYYPLHVVMTA-LGVPED 175 (428)
T ss_dssp TTTHHHHHHHHH-HTCCGG
T ss_pred HhhhHHHHHHHH-cCCCHh
Confidence 57999999999 998764
No 50
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.67 E-value=3.6e-16 Score=125.25 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=99.7
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRK 145 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 145 (239)
.+++..+.++++ |||| +.++.+.++++||+.+++++.+. ..|++++...... ......+++ ..+|+.|+++|+
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~-~~~~~~~~~-~~~g~~~~~~R~ 100 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVIEG-ASPTPGMIH-EIDPPEHRALRK 100 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGSTT-CCCCTTCGG-GCCTTHHHHHHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccCCc-ccccccccc-cCCchHHHHHHH
Confidence 578899999976 9998 55666899999999999999754 4677765332211 111122344 446999999999
Q ss_pred HHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccccC
Q 048689 146 IATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYTS 216 (239)
Q Consensus 146 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~~ 216 (239)
++++ +|++..++.+.+.+.+++.++++. . +.++|+.+.+ ..+++|+++.+ ||.+.+.
T Consensus 101 ~~~~-~fs~~~l~~~~~~i~~~~~~ll~~----------~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~ 158 (411)
T 2jjn_A 101 VVSS-AFTPRTISDLEPRIRDVTRSLLAD----------A--GESFDLVDVLAFPLPVTIVAEL-LGLPPMD 158 (411)
T ss_dssp HHHH-HSCHHHHHTTHHHHHHHHHHHHHT----------S--CSEEEHHHHTTTHHHHHHHHHH-HTCCSCC
T ss_pred Hhhh-hcCHHHHHHHHHHHHHHHHHHHhc----------C--CCceeHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 9998 999999999999999998887765 1 2378998554 67999999998 9988654
No 51
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.66 E-value=5.2e-16 Score=124.46 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=105.2
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCc-hhhhhhcC--CcceEEecCCCchhH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKT-MATELLGY--NFLVIGFAPYGNYWR 141 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~w~ 141 (239)
.+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|.+++.. .....+.. ...+++ ..+|+.|+
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~-~~dg~~h~ 112 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLL-SMDPPEHS 112 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGG-GCCTTHHH
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCc-cCCchHHH
Confidence 6889999999 89999999997 788999999999999999753 46554422 11000111 122344 45799999
Q ss_pred HHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhccccc
Q 048689 142 QSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 142 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~~ 215 (239)
++||++++ +|++..++.+.+.+.+++.++++.+.+ . +.++|+...+. .+++|+++. +||.+.+
T Consensus 113 ~~R~~l~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~--~~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 176 (417)
T 2y5n_A 113 RLRRLVVK-AFTARRAESLRPRAREIAHELVDQMAA-------T--GQPADLVAMFARQLPVRVICE-LLGVPSA 176 (417)
T ss_dssp HHHHHHHH-HSCHHHHHHTHHHHHHHHHHHHHHHHH-------H--CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------C--CCCeeHHHHHHHHhHHHHHHH-HcCCCHH
Confidence 99999999 899999999999999999999999931 1 22799987774 699999998 6998764
No 52
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.66 E-value=3.1e-15 Score=119.45 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=105.5
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCch-hhhhhcCCcce--EEecCCC----
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-ATELLGYNFLV--IGFAPYG---- 137 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~g---- 137 (239)
.+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|.+++... ....... ..+ +++ .+|
T Consensus 26 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~-~~g~~~~ 100 (404)
T 2xbk_A 26 LKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLI-SDADAES 100 (404)
T ss_dssp TBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTC-BCSCHHH
T ss_pred cCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-ccccccee-eCCCCCC
Confidence 6888999999 89999999996 788999999999999999753 465554331 1111111 123 444 469
Q ss_pred --chhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 138 --NYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 138 --~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
+.|+++||++++ +|++..++.+.+.+.+++.++++.+.+ . |.++|+.+.+ ..+++++++. +||.+.
T Consensus 101 ~~~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~------~---g~~~d~~~~~~~~~~~~vi~~-~~G~~~ 169 (404)
T 2xbk_A 101 GRRQHAETRRLLTP-LFSARRVLEMQPKVEEAADTLLDAFIA------Q---GPPGDLHGELTVPFALTVLCE-VIGVPP 169 (404)
T ss_dssp HHHHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH------T---CSSEEHHHHTHHHHHHHHHHH-HHTCCG
T ss_pred CCchHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCeeHHHHHHHHHHHHHHHH-HhCCCH
Confidence 999999999998 899999999999999999999999931 1 3479998766 5699999998 799876
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 170 ~ 170 (404)
T 2xbk_A 170 Q 170 (404)
T ss_dssp G
T ss_pred H
Confidence 4
No 53
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.65 E-value=1.2e-15 Score=122.09 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=104.7
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCC-Cchhh---------hhhcC-C-cceEE
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRP-KTMAT---------ELLGY-N-FLVIG 132 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~-~~~~~---------~~~~~-~-~~~~~ 132 (239)
.+++..+.++ ++||||+++++ ++.+.++++||+++++++.++. +++++ ..... ..++. . ..++
T Consensus 17 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 92 (411)
T 1gwi_A 17 TDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM- 92 (411)
T ss_dssp SCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG-
T ss_pred CChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc-
Confidence 6899999999 99999999997 8889999999999999997543 34433 11100 00000 1 1234
Q ss_pred ecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhc
Q 048689 133 FAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAG 211 (239)
Q Consensus 133 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG 211 (239)
+..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.| .. . +.++|+.+.+. .+++|+++. +||
T Consensus 93 ~~~~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~-~--~~~~d~~~~~~~~~~~~vi~~-~~G 161 (411)
T 1gwi_A 93 LTVDGAEHRRLRTLVAQ-ALTVRRVEHMRGRITELTDRLLDEL------PA-D--GGVVDLKAAFAYPLPMYVVAD-LMG 161 (411)
T ss_dssp GGCCHHHHHHHHHHHTT-TSCHHHHHTTHHHHHHHHHHHHHTS------CC-S--CCCEEHHHHTTTHHHHHHHHH-HHT
T ss_pred ccCCcHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHH------HH-c--CCCcchHHHHhhHHHHHHHHH-HhC
Confidence 44579999999999998 9999999999999999999999888 42 1 45899998886 599999996 799
Q ss_pred cccc
Q 048689 212 KRYT 215 (239)
Q Consensus 212 ~~~~ 215 (239)
.+.+
T Consensus 162 ~~~~ 165 (411)
T 1gwi_A 162 IEEA 165 (411)
T ss_dssp CCGG
T ss_pred CCHH
Confidence 8764
No 54
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.65 E-value=2.2e-15 Score=121.11 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=104.3
Q ss_pred CchHHHHHHHHHHhCCeeEEEcC--CeeEEEeCCHHHHHHHHHhCCcccCCCCCc----------hhh------hhhcCC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLG--VKQALVVSNWEIAKECFTTNDKAFAGRPKT----------MAT------ELLGYN 127 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~~~~~~~~~~~~----------~~~------~~~~~~ 127 (239)
.+++.++.++++ ||||+++++| +.++++++||+.+++++.++ .|++++.. ... ...+
T Consensus 20 ~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 94 (425)
T 2z3t_A 20 ADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVV-- 94 (425)
T ss_dssp HCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHH--
T ss_pred cChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccc--
Confidence 578899999865 9999999987 67899999999999999754 67766531 100 1111
Q ss_pred cceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHH
Q 048689 128 FLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIIL 206 (239)
Q Consensus 128 ~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~ 206 (239)
+.+++++ +|+.|+++||++++ +|++..++.+.+.+.+++.++++.+ ... | ++|+...+ ..+++|+++
T Consensus 95 ~~~l~~~-dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~~---g-~~dl~~~~~~~~~~~vi~ 162 (425)
T 2z3t_A 95 ENWLVFL-DPPHHTELRSLLTT-EFSPSIVTGLRPRIAELASALLDRL------RAQ---R-RPDLVEGFAAPLPILVIS 162 (425)
T ss_dssp TTCGGGC-CHHHHHHHHHHHHG-GGSHHHHHHHHHHHHHHHHHHHHHH------TTS---S-SCBHHHHTTTHHHHHHHH
T ss_pred ccccccC-CchHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------Hhc---C-CccHHHHHHHHHHHHHHH
Confidence 1234444 69999999999998 9999999999999999999999999 432 2 78998755 789999999
Q ss_pred HHHhccccc
Q 048689 207 RIIAGKRYT 215 (239)
Q Consensus 207 ~~~fG~~~~ 215 (239)
.+ ||.+.+
T Consensus 163 ~~-~G~~~~ 170 (425)
T 2z3t_A 163 AL-LGIPEE 170 (425)
T ss_dssp HH-HTCCGG
T ss_pred HH-hCCCHH
Confidence 98 998765
No 55
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.65 E-value=1.3e-15 Score=122.12 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCCchh-------hhhhc--CCcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPKTMA-------TELLG--YNFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~ 135 (239)
.+++..+.+|+ +||||+++++ |+.++++++||+++++++.+. .|++++.... ..... ....+.++..
T Consensus 22 ~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (413)
T 2z36_A 22 FAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLGM 98 (413)
T ss_dssp TBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGGC
T ss_pred cCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccccccccccccccccccccccc
Confidence 68899999997 7899999997 788999999999999999753 5666542211 11110 0112313345
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++|+++++ +|++..++.+.+.+.+++.++++.+ .... +.++|+.+.+. .+++++++.+ ||.+.
T Consensus 99 ~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~~~--~~~~d~~~~~~~~~~~~vi~~~-~G~~~ 168 (413)
T 2z36_A 99 DGAEHSAARRPVIG-EFTVKRLAALRPRIQDIVDHFIDDM------LATD--QRPVDLVQALSLPVPSLVICEL-LGVPY 168 (413)
T ss_dssp CHHHHHHHHHHHHG-GGSHHHHHHHHHHHHHHHHHHHHHH------TTCS--CSSEEHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred CchHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------HHhc--CCCccHHHHHhhhhHHHHHHHH-hCCCH
Confidence 69999999999998 8999999999999999999999999 4221 34799987665 6999999994 99876
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 169 ~ 169 (413)
T 2z36_A 169 T 169 (413)
T ss_dssp G
T ss_pred H
Confidence 4
No 56
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.64 E-value=3.1e-15 Score=119.31 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRK 145 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 145 (239)
.+++..+.++++ ||||+++. . +.++++||+++++++.++ ..|++++... ..... ..+++ ..+|+.|+++|+
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~--~~~l~-~~~g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQPA--LPMMI-DMDDPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSCC--CSSGG-GCCTTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Ccccc--ccccc-ccCchHHHHHHH
Confidence 689999999987 99998664 3 799999999999999754 3677665322 11111 12333 446999999999
Q ss_pred HHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHH-HHHHHHHHHHHHHhccccc
Q 048689 146 IATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHW-LEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 146 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~dii~~~~fG~~~~ 215 (239)
++++ +|++..++.+.+.+.+++.++++.+ ... + ++|+... ...+++|+++.+ ||.+.+
T Consensus 89 ~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~~---~-~~d~~~~~~~~~~~~vi~~~-fG~~~~ 147 (398)
T 2xkr_A 89 LVNA-GFTRKRVKDKEASIAALCDTLIDAV------CER---G-ECDFVRDLAAPLPMAVIGDM-LGVRPE 147 (398)
T ss_dssp HHGG-GSCHHHHHTTHHHHHHHHHHHHHTT------TTT---S-EEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred Hhhh-hhCHHHHHHHHHHHHHHHHHHHHhh------hhc---C-CccHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 9998 9999999999999999999999988 332 2 7899854 568999999998 999764
No 57
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.64 E-value=2.2e-15 Score=120.73 Aligned_cols=133 Identities=9% Similarity=0.053 Sum_probs=104.2
Q ss_pred CchHHHHHHHHHHhCCee-----EEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--hh-hhh-c-CCcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIF-----TMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM--AT-ELL-G-YNFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~-----~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~~-~~~-~-~~~~~~~~~~ 135 (239)
.+++.++.+++ +||||+ ++++ .+.++++||+++++++.++ ..|++++... .. ..+ + ....+++++
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~- 99 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ- 99 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC-
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC-
Confidence 68899999985 699999 7765 5799999999999999865 5677765431 11 122 2 112344444
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchH-HHHHHHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMI-HWLEGTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++|+++++ +|++..++.+.+.+.+++.++++.|.+ . .++|+. +.+..+++|+++. +||.+.
T Consensus 100 ~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~------~----~~vdl~~~~~~~~~~~vi~~-~~G~~~ 167 (414)
T 2uuq_A 100 DPPVHTEFRKLVSR-GFTPRQVETVEPTVRKFVVERLEKLRA------N----GGGDIVTELFKPLPSMVVAH-YLGVPE 167 (414)
T ss_dssp CTTHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHH------T----TEEEHHHHTTTHHHHHHHHH-HTTCCG
T ss_pred CchhHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh------c----CCccHHHHHHHHhHHHHHHH-HhCCCH
Confidence 69999999999998 999999999999999999999999932 2 158997 5567999999999 699877
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 168 ~ 168 (414)
T 2uuq_A 168 E 168 (414)
T ss_dssp G
T ss_pred H
Confidence 5
No 58
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.63 E-value=1e-15 Score=122.92 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=103.4
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC-----ch-h--hhhhcCC-cceEEecCC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK-----TM-A--TELLGYN-FLVIGFAPY 136 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~~~~~~~ 136 (239)
.+++..+.++ ++||||++ + ++.+.++++||++++++|.++. |++++. .. . ...++.. ..+++ ..+
T Consensus 26 ~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 99 (419)
T 1q5d_A 26 EDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLF-GLP 99 (419)
T ss_dssp TCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTT-TSC
T ss_pred hChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccc-cCC
Confidence 6899999999 68999998 6 6678999999999999997653 777761 11 1 1111100 12333 346
Q ss_pred CchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 137 GNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 137 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
|+.|+++|+++++ +|++..++.+.+.+.+++.++++.+ ... + ++|+...+ ..+++|+++.+ ||.+.+
T Consensus 100 g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~~---~-~~d~~~~~~~~~~~~vi~~~-fG~~~~ 167 (419)
T 1q5d_A 100 PEDHARVRKLVNP-SFTSRAIDLLRAEIQRTVDQLLDAR------SGQ---E-EFDVVRDYAEGIPMRAISAL-LKVPAE 167 (419)
T ss_dssp HHHHHHHHHHHGG-GGSHHHHGGGHHHHHHHHHHHHHHH------TTS---S-CEETTTTTGGGSHHHHHHHH-TTCCGG
T ss_pred chHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHH------Hhc---C-CCCHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999998 9999999999999999999999999 432 2 78988655 78999999998 998765
No 59
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.62 E-value=1.6e-15 Score=121.52 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=103.5
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCC--eeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcC---C-cceEEecCCCch
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGV--KQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGY---N-FLVIGFAPYGNY 139 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~~ 139 (239)
.+++..+.++++ ||||+++...| .+.++|+++++++++++ +...|++++.......... . .. .++..+|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~-~l~~~dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGR-MMVVSEHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTT-SGGGCCHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCC-CccccCcHH
Confidence 689999999987 99999986334 78999999999999995 4456776654322111110 0 12 234557999
Q ss_pred hHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 140 WRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 140 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
|+++||++++ +|++..++.+.+.+.+++.++++.+ ... .++|+.+++ ..+++++|+. +||.+.
T Consensus 114 h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~~----~~~dl~~~~~~~~~~~vi~~-l~G~~~ 177 (415)
T 3mgx_A 114 HRKLRKLVGP-LLSRAAARKLAERVRIEVGDVLGRV------LDG----EVCDAATAIGPRIPAAVVCE-ILGVPA 177 (415)
T ss_dssp HHHHHHHHGG-GSSHHHHHHSHHHHHHHHHHHTTTS------SSS----SCEESTTTTTTHHHHHHHHH-HHTCCG
T ss_pred HHHHHHHhHh-hhCHHHHHHHHHHHHHHHHHHHHHH------Hhc----CCcchHHHHHHHHHHHHHHH-HcCCCH
Confidence 9999999998 9999999999999999999998888 432 278998888 6799999998 589754
No 60
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.62 E-value=2.4e-15 Score=120.35 Aligned_cols=135 Identities=9% Similarity=0.087 Sum_probs=104.5
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCC--eeEEEeCCHHHHHHHHHhCCcccCCCCCch-----hhhhhcCCcceEEecCCCc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGV--KQALVVSNWEIAKECFTTNDKAFAGRPKTM-----ATELLGYNFLVIGFAPYGN 138 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~ 138 (239)
++++..+.+++ +||||+++.+++ .+.+++++|+.+++|+.+ ..|.+++... .....+....+++ ..+|+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLA-FADQP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCST-TCCTT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccc-cCCch
Confidence 67889999987 799999998754 679999999999999964 3565554321 1111111022344 45799
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhccccc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~~ 215 (239)
.|+++|+++++ +|++..++.+.+.+.+.+.++++.|.+ . +.++|+.+.+. .+++|+|+. +||.+.+
T Consensus 103 ~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 169 (411)
T 2dkk_A 103 DHNRLRRAVAG-AFTVGATKRLRPRAQEILDGLVDGILA------E---GPPADLVERVLEPFPIAVVSE-VMGVPAA 169 (411)
T ss_dssp HHHHHHHHHGG-GSSHHHHHHHHHHHHHHHHHHHHHHHH------H---CSCEEHHHHTTTHHHHHHHHH-HHTCCSS
T ss_pred HHHHHHHHhhH-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999999 899999999999999999999999942 1 34799998776 699999999 5998764
No 61
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.61 E-value=1.8e-15 Score=122.55 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhCCee--EEE-cCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhh----------hhcCC--cceEE
Q 048689 68 AHRVLGNMADKYGPIF--TMK-LGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATE----------LLGYN--FLVIG 132 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~--~~~-~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~ 132 (239)
++..+.++ ++||||+ ++. +++.++++|++++++++++++. ..|++++...... ..+.. ....+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 88888888 6789999 887 6778999999999999999654 6677766432211 01000 01133
Q ss_pred ecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhc
Q 048689 133 FAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAG 211 (239)
Q Consensus 133 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG 211 (239)
+..+|+.|+++||++++ +|++..++.+.+.+.+++.++++.+.+ . +.++|+.+.+ ..+++++|+++ ||
T Consensus 125 ~~~dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~------~---~~~~dl~~~~~~~~~~~vi~~l-~G 193 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLTQD-WFMPKNLARLDGEIRKIANEAIDRMLG------A---GEEGDFMALVAAPYPLHVVMQI-LG 193 (450)
T ss_dssp GGCCTTHHHHHHHHHHT-TTSHHHHGGGHHHHHHHHHHHHHHHHH------T---CSEEEHHHHTTTHHHHHHHHHH-TT
T ss_pred ccCCCHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCEeeHHHHHHHHHHHHHHHH-cC
Confidence 45579999999999998 999999999999999999999999942 1 3489998888 68999999995 99
Q ss_pred cccc
Q 048689 212 KRYT 215 (239)
Q Consensus 212 ~~~~ 215 (239)
.+.+
T Consensus 194 ~~~~ 197 (450)
T 3tkt_A 194 VPPE 197 (450)
T ss_dssp CCGG
T ss_pred CChh
Confidence 7653
No 62
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.59 E-value=3.5e-15 Score=120.51 Aligned_cols=132 Identities=8% Similarity=0.055 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRK 145 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 145 (239)
.+++.++.++ ++||||+++..++ .++|++|++++++|.++. .|++++......... + .+.++..+|+.|+++|+
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~-~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-R-GPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-C-CCccccCCcHHHHHHHH
Confidence 5778888777 6799999987655 899999999999997654 376665432211111 1 12234456999999999
Q ss_pred HHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHH-HHHHHHHHHHHHHhccccc
Q 048689 146 IATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHW-LEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 146 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~dii~~~~fG~~~~ 215 (239)
++.+ +|++..++.+.+.+.+++.++++.| .. +..+|+... ...+++++++. +||.+.+
T Consensus 127 ~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 185 (441)
T 3nc3_A 127 IVVR-SFIGDALDHLSPLIKQNAENLLAPY------LE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKR 185 (441)
T ss_dssp HHHH-HHHHTHHHHHHHHHHHHHHHHHTTT------TT----TTEEECCCCCHHHHHHHHHHH-HTTCCGG
T ss_pred HHHh-hcCHHHHHHHHHHHHHHHHHHHHHH------Hh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999 9999999999999999999999888 32 236887544 45699999999 5898754
No 63
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.58 E-value=8.7e-15 Score=116.63 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=101.9
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRK 145 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 145 (239)
.+++..+.+++++ |||+++..++ +.++++||+++++++.+ ...|++++........+.. ...++..+|+.|+++||
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~h~~~R~ 99 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVM-QFIPLQQDGAEHKAFRT 99 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHH-CCTTTTCCHHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCcccccc-ccCccccCCcHHHHHHH
Confidence 7999999999999 9999998864 58889999999999964 4567776632211111111 11334556999999999
Q ss_pred HHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 146 IATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 146 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
++++ +|++..++.+.+.+.+.+.++++.+ ... ..+|+...+ ..++.++++. +||.+.
T Consensus 100 ~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l------~~~----~~~d~~~~~~~~~~~~v~~~-~~G~~~ 157 (396)
T 3oft_A 100 PVMK-GLASRFVVALEPKVQAVARKLMESL------RPR----GSCDFVSDFAEILPLNIFLT-LIDVPL 157 (396)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHHHHHHHH------GGG----SEEEHHHHTTTTHHHHHHHH-HTTCCG
T ss_pred Hhhh-hhCHHHHHHHHHHHHHHHHHHHHHh------hhc----CCccHHHHHHHHHHHHHHHH-HcCCCH
Confidence 9998 9999999999999999999999999 322 268876666 5578888877 688754
No 64
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.58 E-value=3.2e-14 Score=114.17 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=100.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhh-hhhc-------CCcceEEecCCC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMAT-ELLG-------YNFLVIGFAPYG 137 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~g 137 (239)
.+++.++.++ ++||||++++.| .++|++|+.+++++++ ...+++++..... ...+ ....++ +..+|
T Consensus 29 ~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 102 (418)
T 3r9b_A 29 ADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASF-LFLDP 102 (418)
T ss_dssp TCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCG-GGCCT
T ss_pred cCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccch-hhcCC
Confidence 7899999988 578999998765 8999999999999965 3344544432211 1111 011233 44469
Q ss_pred chhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 138 NYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 138 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
+.|+++||++++ +|++..++.+.+.+.+++.++++ + ... .++|+...+ ..+++++++. +||.+.+
T Consensus 103 ~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~-l------~~~----~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 168 (418)
T 3r9b_A 103 PDHTRLRGLVSK-AFAPRVIKRLEPEITALVDQLLD-A------VDG----PEFNLIDNLAYPLPVAVICR-LLGVPIE 168 (418)
T ss_dssp THHHHHHHHHHG-GGSHHHHGGGHHHHHHHHHHHHH-T------CCS----SEEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred chHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHh-h------hcc----CCeehHHHHhCcCCHHHHHH-HcCCCHH
Confidence 999999999998 99999999999999999999999 8 432 278976555 5899999999 8998765
No 65
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.57 E-value=2.3e-14 Score=115.05 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHH
Q 048689 66 EPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSR 144 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 144 (239)
.+++.++.++++++| ||+++..++ +.++|+||+.+++++. +...|++++............ ..++..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~-~~~~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYD-MVPTKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCC-CTTTTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccc-cCCccCCcHHHHHHH
Confidence 689999999987765 899998766 5899999999999994 456777766332111111111 123445699999999
Q ss_pred HHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccccCCchhHHH
Q 048689 145 KIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYTSQSQEVND 223 (239)
Q Consensus 145 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~~~~~~~~~ 223 (239)
+++++ +|++..++.+.+.+.+.+.++++.| ... ..+|+...+ ..++.++++. +||.+.+ +...
T Consensus 115 ~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~~----~~~d~~~~~~~~~~~~v~~~-~~G~~~~----~~~~ 178 (421)
T 3lxh_A 115 KAIDK-GLNLAEIRKLEDQIRTIAVEIIEGF------ADR----GHCEFGSEFSTVFPVRVFLA-LAGLPVE----DATK 178 (421)
T ss_dssp HHHHH-HHSHHHHHTTHHHHHHHHHHHHHTT------TTT----SEEEHHHHTTTTHHHHHHHH-HHTCCGG----GHHH
T ss_pred HHHhh-hcCHHHHHHHHHHHHHHHHHHHHHH------hhc----CCeehHHHHHHHHHHHHHHH-HcCCCHH----HHHH
Confidence 99999 9999999999999999999999988 432 268876555 5688888887 5897653 2334
Q ss_pred HHHHHHHHH
Q 048689 224 WQQQITKFT 232 (239)
Q Consensus 224 ~~~~~~~~~ 232 (239)
+.+....++
T Consensus 179 ~~~~~~~~~ 187 (421)
T 3lxh_A 179 LGLLANEMT 187 (421)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 66
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.56 E-value=3.8e-15 Score=118.74 Aligned_cols=131 Identities=9% Similarity=0.097 Sum_probs=100.9
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccC-C-CCCc--hhhh--hhcC-CcceEEecCCC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFA-G-RPKT--MATE--LLGY-NFLVIGFAPYG 137 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~-~-~~~~--~~~~--~~~~-~~~~~~~~~~g 137 (239)
.+++..+.+| ++||||+++++ ++.+.++++||+++++++.++ .|. + ++.. .... .+.. ...+++++
T Consensus 16 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 89 (396)
T 1n40_A 16 DRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI--- 89 (396)
T ss_dssp SSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH---
T ss_pred cCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH---
Confidence 6889999999 99999999997 788999999999999999754 355 4 3321 1110 0100 11233333
Q ss_pred chhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHH-HHHHHHHHHHHhccccc
Q 048689 138 NYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLE-GTVLDIILRIIAGKRYT 215 (239)
Q Consensus 138 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~dii~~~~fG~~~~ 215 (239)
.|+++||++++ .|++. ++.+.+.+.+++.++++.+.+ . +.++|+...+. .+++|+++. +||.+.+
T Consensus 90 -~h~~~R~~~~~-~fs~~-~~~~~~~i~~~~~~l~~~l~~------~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 155 (396)
T 1n40_A 90 -ADAGLRKAVMK-AITPK-APGLEQFLRDTANSLLDNLIT------E---GAPADLRNDFADPLATALHCK-VLGIPQE 155 (396)
T ss_dssp -HHTTCHHHHHH-HTSSC-STTHHHHHHHHHHHHHHHHHH------H---CSCEETTTTTHHHHHHHHHHH-HHTCCGG
T ss_pred -HHHHHHHHHHH-hhChH-HHHhHHHHHHHHHHHHHHHHh------c---CCCccHHHHHHHHhHHHHHHH-HhCCChh
Confidence 89999999999 89999 999999999999999999942 1 23789987665 799999999 8998764
No 67
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.56 E-value=2.5e-14 Score=114.02 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=99.3
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhh-------hhhcCCcceEEecCCCc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMAT-------ELLGYNFLVIGFAPYGN 138 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~ 138 (239)
.+++.++.++ ++||||++ + +.+.++++||++++++|.+ ..|.+++..... ...+....+++ ..+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIIL-FQDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGG-GCCTT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccc-cCCch
Confidence 4778888777 58999998 6 5789999999999999964 356554321100 01110012344 44699
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHH-HHHHHHHHHHHHHhccccc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHW-LEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~dii~~~~fG~~~~ 215 (239)
.|+++|+++++ +|++..++.+.+.+.+++.++++.+ .. +.++|+... ...+++|+++.+ ||.+.+
T Consensus 86 ~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~ 151 (397)
T 3buj_A 86 DHGRLRGVVGP-AFSPSALRRLEPVIAGTVDDLLRPA------LA----RGAMDVVDELAYPLALRAVLGL-LGLPAA 151 (397)
T ss_dssp HHHHHHHHHGG-GSSTTTTGGGHHHHHHHHHHHHHHH------HT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred hHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHH------hh----cCCeehHHHHHHHhHHHHHHHH-hCCCHH
Confidence 99999999998 9999999999999999999999999 32 227898755 468999999998 998765
No 68
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.55 E-value=1.3e-14 Score=115.79 Aligned_cols=129 Identities=9% Similarity=0.131 Sum_probs=93.9
Q ss_pred HHHHHHhCCeeEEEcC-Ce---eEEEeCCHHHHHHHHHhCCcccCCCCC------chhhhhh--cCCcceEEecCCCchh
Q 048689 73 GNMADKYGPIFTMKLG-VK---QALVVSNWEIAKECFTTNDKAFAGRPK------TMATELL--GYNFLVIGFAPYGNYW 140 (239)
Q Consensus 73 ~~~~~~yG~i~~~~~~-~~---~~v~v~~p~~i~~il~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~g~~w 140 (239)
.+|+++ |||++++++ +. ++++++||++++++++++ ..|++++. ....... .....++++ .+|+.|
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~ 96 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMD-YDPPEH 96 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGG-CCTTHH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCccc-cCCHHH
Confidence 447776 999999875 45 799999999999999433 34665553 1100101 001123444 469999
Q ss_pred HHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHH-HHHHHHHHHHhccccc
Q 048689 141 RQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEG-TVLDIILRIIAGKRYT 215 (239)
Q Consensus 141 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~-~~~dii~~~~fG~~~~ 215 (239)
+++||++++ .|++..++.+.+.+.+++.++++.+.+ . +.++|+.+.+.. +++++++. +||.+.+
T Consensus 97 ~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 161 (398)
T 1lfk_A 97 TRLRRKLTP-GFTLRKMQRMAPYIEQIVNDRLDEMER------A---GSPADLIAFVADKVPGAVLCE-LVGVPRD 161 (398)
T ss_dssp HHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH------H---CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999999998 899999999999999999999999932 1 347999999887 99999998 6998764
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.53 E-value=1.7e-13 Score=110.21 Aligned_cols=135 Identities=8% Similarity=0.091 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCcccCCCCC---chhhh-----h-hcCCcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAFAGRPK---TMATE-----L-LGYNFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~---~~~~~-----~-~~~~~~~~~~~~ 135 (239)
.+++..+.+++++ |||+++.. ++.++++|++++.+++++.+. ..|++++. ..... . .+... ..++..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDL-PNFIAM 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCC-CCGGGC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCccccccccccccccc-Cccccc
Confidence 6799999999876 99999976 456799999999999999754 44655431 11100 0 01111 223455
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++|+++++ .|++..++.+.+.+.+.+.++++.+ .. +.++|+...+ ..+++++++. +||.+.
T Consensus 115 dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l------~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~ 182 (426)
T 3rwl_A 115 DRPRHDEQRKAVSP-IVAPANLAALEGTIRERVSKTLDGL------PV----GEEFDWVDRVSIEITTQMLAT-LFDFPF 182 (426)
T ss_dssp CTTHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHTS------CS----SSCEEHHHHTHHHHHHHHHHH-HHTCCG
T ss_pred CchHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHh------hc----CCCcchHHHHHHHHHHHHHHH-HcCCCH
Confidence 79999999999998 9999999999999999999999888 32 3489987776 6789998887 899865
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 183 ~ 183 (426)
T 3rwl_A 183 E 183 (426)
T ss_dssp G
T ss_pred H
Confidence 4
No 70
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.51 E-value=4.6e-14 Score=110.34 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=89.4
Q ss_pred HHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhH
Q 048689 77 DKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRR 156 (239)
Q Consensus 77 ~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~ 156 (239)
++||||+++ | .++++||+++++++.++ ..|++++....... ...++++ .+|+.|+++||++++ +|++.+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~~-~~g~~~~~~R~~~~~-~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFIT-MDNPEHKEFRDISAP-YFLPSK 70 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGG-CCHHHHHHHHHHHHH-HHSHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---ccccccc-CCchHHHHHHHHhhh-hcCHHH
Confidence 579999876 3 89999999999999864 46777652111111 1223444 469999999999999 999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 157 LEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 157 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
++.+.+.+.+++.++++.+ . ++|+.+++ ..+++|+++++ ||.+.+
T Consensus 71 l~~~~~~i~~~~~~l~~~l------~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~ 116 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNI------D-------NKDIISEYAVRLPVNIISKI-LGIPDS 116 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTC------T-------TSCHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHHHHHhc------c-------ccCHHHHHhhhhhHHHHHHH-cCCCHH
Confidence 9999999999999998887 3 58888865 89999999998 998764
No 71
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.50 E-value=4.5e-14 Score=111.44 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC--c-hhh----hh--hcC-CcceEEecCCCc
Q 048689 69 HRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK--T-MAT----EL--LGY-NFLVIGFAPYGN 138 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~-~~~----~~--~~~-~~~~~~~~~~g~ 138 (239)
+..+.++ ++||||+++ | +.+++++|+++++++.+ ...|++++. . ... .. ++. .+.+++ ..+|+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNN-FSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTML-TSDPP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHC-TTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGG-GCCTT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcC-cccccccccccccccccccccccccccccccccc-cCCCh
Confidence 5667777 589999887 4 58999999999999985 346777764 1 011 01 111 102344 44699
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccccc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~~ 215 (239)
.|+++||++++ +|++..++.+.+.+.+++.++++.+ + . + ++|+.+.+ ..+++|+++.+ ||.+.+
T Consensus 75 ~h~~~R~~~~~-~f~~~~~~~~~~~i~~~~~~l~~~l-~----~-----g-~~d~~~~~~~~~~~~vi~~~-~G~~~~ 139 (368)
T 1io7_A 75 LHDELRSMSAD-IFSPQKLQTLETFIRETTRSLLDSI-D----P-----R-EDDIVKKLAVPLPIIVISKI-LGLPIE 139 (368)
T ss_dssp HHHHHHGGGTT-TTCHHHHHHHHHHHHHHHHHHHHTC-C----T-----T-SEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHh-h----c-----C-CccHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 99999999998 9999999999999999998888776 2 1 2 68999877 78999999998 998764
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.46 E-value=1.6e-13 Score=108.20 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC-ch--h-----h-hhhcCC-cceEEecCCCc
Q 048689 69 HRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK-TM--A-----T-ELLGYN-FLVIGFAPYGN 138 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-~~--~-----~-~~~~~~-~~~~~~~~~g~ 138 (239)
+..+.++ ++||||+++. | .+++++|+.++++|.+. ..|++++. .. . . ...+.. ..+++++ +|+
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 74 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTS-DPP 74 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGC-CTT
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccC-Cch
Confidence 5567777 4799999887 3 89999999999999854 46776642 11 1 1 122210 1344444 699
Q ss_pred hhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhccc
Q 048689 139 YWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKR 213 (239)
Q Consensus 139 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~ 213 (239)
.|+++||++++ +|++..++. +.+.+.+.++++.+ . | .+|+.+.+ ..+++|+++. +||.+
T Consensus 75 ~h~~~R~~~~~-~fs~~~l~~--~~i~~~~~~l~~~l------~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~ 134 (367)
T 3b4x_A 75 LHDELRNLTAD-AFNPSNLPV--DFVREVTVKLLSEL------D-----E-EFDVIESFAIPLPILVISK-MLGIN 134 (367)
T ss_dssp HHHHHHHTTGG-GGSGGGSCH--HHHHHHHHHHHHTC------C-----S-EEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred hHHHHHHHHHH-hcCHhhhcc--hHHHHHHHHHHHhc------c-----C-CcchHHHHHHhhHHHHHHH-HcCCC
Confidence 99999999999 899999988 99999999988888 4 2 49998765 7999999999 79997
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.40 E-value=9.6e-13 Score=104.77 Aligned_cols=131 Identities=8% Similarity=-0.007 Sum_probs=99.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch-hhhhhcCCcceEEecCCCchhHHHH
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM-ATELLGYNFLVIGFAPYGNYWRQSR 144 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~w~~~R 144 (239)
.+++..+.++++ +|||+++..| .+++++++.+++++... .|+.++... ...... ...+ ++..+|+.|+++|
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~-~~~~-l~~~dg~~h~~~R 91 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAV-ASDT-ALGSDPPHHTVLR 91 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGG-GGGS-GGGCCTTHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchh-cccc-cccCCchHHHHHH
Confidence 478888888866 4899877543 68999999999999532 454332111 111111 1122 3455799999999
Q ss_pred HHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccccc
Q 048689 145 KIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 145 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~~~ 215 (239)
|++++ +|+++.++.+.+.+.+.+.++++.+ .. +.++|+...+..+++++++..+||.+.+
T Consensus 92 ~~~~~-~fs~~~~~~~~~~i~~~~~~l~~~~------~~----~~~~d~~~~~~~~~~~vi~~~~~G~~~~ 151 (394)
T 2wiy_A 92 RQTNK-WFTPKLVDGWVRTTRELVGDLLDGV------EA----GQVIEARRDLAVVPTHVTMARVLQLPED 151 (394)
T ss_dssp HHHHT-TCSHHHHHHHTHHHHHHHHHHHHTC------CT----TCCEEHHHHHTHHHHHHHHHHHHTCCCC
T ss_pred HHHHh-ccCHHHHHHHHHHHHHHHHHHHHHH------hc----cCCeeHHHHHHhhhHHHHHHHHcCCCHh
Confidence 99998 9999999999999999999988877 32 3479999999999999999999998643
No 74
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.37 E-value=4.6e-12 Score=101.38 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred Cccccceee---ccccCCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch---hhhh
Q 048689 50 GGAWPLIGH---LHILRGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM---ATEL 123 (239)
Q Consensus 50 p~~~p~lG~---~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~---~~~~ 123 (239)
+.++|.+|- -..+. .|++..+.++++ +|||++. .+.+.++|++++.++++|.+ ...|++..... ....
T Consensus 17 ~~~~P~~~~dp~~~~~~--~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~ 90 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYF--ADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLND-PLTFCSSRGVGLSDFKKE 90 (412)
T ss_dssp STTSCEECCCTTSHHHH--HSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTC-TTTEESTTCSSSSCTTTS
T ss_pred CCCCCccCCCCCCHHHH--hCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcC-CccccCCCcccccccccc
Confidence 345777762 22344 689999988865 6999754 45578999999999999964 33443332111 1111
Q ss_pred hcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccch-HHHHHHHHH
Q 048689 124 LGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEM-IHWLEGTVL 202 (239)
Q Consensus 124 ~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~ 202 (239)
......+.++..+|+.|+++||++++ +|++++++.+.+.+.+.+.++++++.+ . +..+|+ .+....+++
T Consensus 91 ~~~~~~~~~~~~Dg~~H~r~R~~~~~-~Fs~~~l~~~~~~i~~~~~~l~~~~~~------~---~~~~D~v~~~~~~~~~ 160 (412)
T 4dnj_A 91 KPWRPPSLILEADPPAHTRTRAVLSK-VLSPATMKRLRDGFAAAADAKIDELLA------R---GGNIDAIADLAEAYPL 160 (412)
T ss_dssp CCSSCCCTTTTCCTTHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHHHH------T---TSEEETCCCCCCHHHH
T ss_pred ccccCCCccccCChHHHHHHHhhccc-ccCHHHHHHhhHHHHHHHHHHHHhhhc------c---CCCceeHHHHHhhhhH
Confidence 11111233455679999999999999 999999999999999999999999832 2 235664 455667888
Q ss_pred HHHHHHHhccc
Q 048689 203 DIILRIIAGKR 213 (239)
Q Consensus 203 dii~~~~fG~~ 213 (239)
++++.+ +|.+
T Consensus 161 ~~i~~l-~g~~ 170 (412)
T 4dnj_A 161 SVFPDA-MGLK 170 (412)
T ss_dssp HHHHHH-HTCC
T ss_pred hHHHHH-cCCc
Confidence 888885 5543
No 75
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.30 E-value=1.3e-12 Score=104.81 Aligned_cols=128 Identities=12% Similarity=0.067 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCC-c---------hhhhhhcCCcceEEecC
Q 048689 66 EPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPK-T---------MATELLGYNFLVIGFAP 135 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~ 135 (239)
.+++.+ ++.++|||++++..++.. ++|++++.++++|.++. +..... . ......+ +.++..
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 103 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMV----DFLQSL 103 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHH----HSGGGC
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhc----CccccC
Confidence 677777 455679999999886656 99999999999997543 322111 0 0111111 233455
Q ss_pred CCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 136 YGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 136 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
+|+.|+++||++++ +|++..++.+.+.+.+.+.++++.+ + . | .+|+...+ ..+++++++. +||.+.
T Consensus 104 dg~~h~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l-~------~---g-~~d~~~~~~~~~~~~vi~~-l~G~~~ 170 (416)
T 3p3o_A 104 DGADHRRLRGLATH-PFTPRRITAVQPFVRSTVEQLIDKL-P------Q---G-DFDFVQHFPHPLPALVMCQ-LLGFPL 170 (416)
T ss_dssp CHHHHHHHHHTTCG-GGSHHHHHHHHHHHHHHHHHHHHTC-C------S---S-SEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred CchHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHhh-c------c---C-CccHHHHHHHHHHHHHHHH-HhCCCH
Confidence 79999999999998 9999999999999999999988877 1 1 2 58865555 5699999999 589765
Q ss_pred c
Q 048689 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 171 ~ 171 (416)
T 3p3o_A 171 E 171 (416)
T ss_dssp G
T ss_pred H
Confidence 4
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.94 E-value=9.9e-09 Score=82.16 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=91.8
Q ss_pred CchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCchhhhhhcCCcceEEecCCCchhHHHH
Q 048689 66 EPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTMATELLGYNFLVIGFAPYGNYWRQSR 144 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 144 (239)
.+++..+.++++..+ +++....++ ...+|+..+.+++++.+ ...|+++....... .+......+...++++|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCcccccc-cccccccCcccCCcHHHHHHH
Confidence 578888888877643 344332333 57889999999999963 34565543221111 111111233445799999999
Q ss_pred HHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH-HHHHHHHHHHHHhcccc
Q 048689 145 KIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL-EGTVLDIILRIIAGKRY 214 (239)
Q Consensus 145 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~dii~~~~fG~~~ 214 (239)
|++++ +|+++.++.+.+.+.+.+.++++.+ ... ..+|+...+ ..+++.+++. ++|...
T Consensus 114 rll~~-~Fs~~~l~~~~~~i~~~~~~lld~l------~~~----g~~D~v~~~a~~l~~~vi~~-llg~~~ 172 (417)
T 4dxy_A 114 KALDK-GLNLAKIRKVEDKVREVASSLIDSF------AAR----GECDFAAEYAELFPVHVFMA-LADLPL 172 (417)
T ss_dssp HHHHH-HHCHHHHHTTHHHHHHHHHHHHHHH------HTT----SEEEHHHHTTTTHHHHHHHH-HTTCCG
T ss_pred HHhhh-hcCHHHHHHHHHHHHHHHHHHHHHh------hhc----CCeeeHHHHHhhhHHHHHHH-HcCCCH
Confidence 99999 9999999999999999999999999 332 267865554 4567777776 577654
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.19 E-value=5e-09 Score=82.59 Aligned_cols=128 Identities=8% Similarity=0.044 Sum_probs=80.8
Q ss_pred Cccccceeecccc---CCCCchHHHHHHHHHHhCCeeEEEcCCeeEEEeCCHHHHHHHHHhCCcccCCCCCch--h----
Q 048689 50 GGAWPLIGHLHIL---RGSEPAHRVLGNMADKYGPIFTMKLGVKQALVVSNWEIAKECFTTNDKAFAGRPKTM--A---- 120 (239)
Q Consensus 50 p~~~p~lG~~~~~---~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~---- 120 (239)
++++|++|+...+ ....+++..+.+++++ ||++.. .+.+++++++.+++++.+ ..|+++.... .
T Consensus 40 ~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~~~~~~ 112 (381)
T 2yjn_B 40 HWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPEWMRAA 112 (381)
T ss_dssp HHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCHHHHHH
T ss_pred cccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCccccccccccc
Confidence 3367999976442 1126899999999876 998764 468999999999999975 3566553211 0
Q ss_pred ---hhhhcCCcceEEecCCCchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHH
Q 048689 121 ---TELLGYNFLVIGFAPYGNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWL 197 (239)
Q Consensus 121 ---~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 197 (239)
...++ .+++.. +|+.| .+ +|+ . .+.+.+.+.++++.+ . + ++|+...+
T Consensus 113 ~~~~~~~~---~~l~~~-dg~~H-------~~-~Ft-----~-~~~i~~~~~~ll~~~------~--g----~~Dl~~~~ 162 (381)
T 2yjn_B 113 GAPPAEWA---QPFRDV-HAASW-------EG-EVP-----D-VGELAESFAGLLPGA------G--A----RLDLVGDF 162 (381)
T ss_dssp TCCHHHHT---HHHHHH-HHCCC-------CS-CCC-----C-CSCHHHHTSTTSCC------------------CCCCC
T ss_pred ccccchhh---hhhhhC-Cchhh-------hh-ccC-----C-hHHHHHHHHHHHHhc------c--C----cchHHHHH
Confidence 11111 234444 58899 55 888 3 667888888877777 3 1 68888666
Q ss_pred -HHHHHHHHHHHHhccccc
Q 048689 198 -EGTVLDIILRIIAGKRYT 215 (239)
Q Consensus 198 -~~~~~dii~~~~fG~~~~ 215 (239)
..+++++|+++ ||.+.+
T Consensus 163 a~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 163 AWQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp CTHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHH-cCCCHH
Confidence 69999999995 998764
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.81 E-value=0.96 Score=27.63 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcCCeeEEEeCCHHHHHHHHHh-CCcccCCCCCc
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLGVKQALVVSNWEIAKECFTT-NDKAFAGRPKT 118 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~-~~~~~~~~~~~ 118 (239)
-+++|+..-.........+.++..+|| +|..+ .+|.-+|...+.+.++..+.. ++..+-.|+..
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 458998765422334556889999994 99888 568899999999999888853 55555555543
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.27 E-value=6.6 Score=24.09 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=39.2
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHhCCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
--++|++..-. ....+.++..+||+|..+.+. |.-+|...+++.+..++..++..+.
T Consensus 13 ~lfV~~Lp~~~----te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~ 77 (103)
T 1s79_A 13 SVYIKGFPTDA----TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYK 77 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCT
T ss_pred EEEEECCCCCC----CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEEC
Confidence 35577776432 245677888899999888753 3457888999999999864333333
No 80
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=81.18 E-value=8.6 Score=24.70 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=41.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
--++||+..-....+....+.++..+||+|..+.+. |.-+|...+++.+...+.. ++..+.+++
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 456788865332122334567889999999887752 3467888999999888853 444444443
No 81
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=80.68 E-value=6.5 Score=23.26 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHH
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKEC 104 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~i 104 (239)
++...-++|++..-. ....+.+...+||+|..+.+. |.-+|-..+++.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~----te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDM----TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 333456788876533 245677888899999988864 4567888999998854
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=80.13 E-value=6.4 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=36.6
Q ss_pred ceeeccccCCCCc----hHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHH
Q 048689 55 LIGHLHILRGSEP----AHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 55 ~lG~~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~ 106 (239)
++||++.-. .+ ....+.++..+||+|..+.+. |.-+|-..+++.+...+.
T Consensus 5 ~V~nLp~~~--~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~ 65 (81)
T 2krb_A 5 VVDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVK 65 (81)
T ss_dssp EEESCCCCC--TTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHT
T ss_pred EEeCCCCCc--HHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHH
Confidence 466665433 22 457788888999999888764 345788899999999885
No 83
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=79.46 E-value=6.2 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=39.4
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------CeeEEEeCCHHHHHHHHHh
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~ 107 (239)
.--++||+..-....+....+.++..+||+|..+.+. +.-+|-..+++.+...+..
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4457888765432233344556889999999888764 4567888999999988853
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=77.97 E-value=9.9 Score=23.53 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=40.4
Q ss_pred CCCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------CeeEEEeCCHHHHHHHHH
Q 048689 46 APEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 46 ~p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~ 106 (239)
.|+.+...-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI----TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp CCTTCCSEEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 344444556788876432 245577888899999888761 345788899999988876
No 85
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=76.73 E-value=6.9 Score=21.91 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCC
Q 048689 69 HRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTND 109 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~ 109 (239)
...+.++..+||+|..+.+. +.-+|-..+++.++.++..+.
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 45577888889998887652 234677889999999986433
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.72 E-value=14 Score=21.96 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=37.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------CeeEEEeCCHHHHHHHHH
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~ 106 (239)
--++||+..-....+....+.++..+||+|..+.+. +.-+|-..+++.++..+.
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHH
Confidence 356888875432233344455888999999888764 335788889999988876
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=70.34 E-value=12 Score=20.90 Aligned_cols=45 Identities=7% Similarity=0.015 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCcccC
Q 048689 69 HRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
...+.++..+||+|..+.+. +.-+|-..+++.++.++..++..+.
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 45577788899998887653 2346778899999998854333333
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=67.96 E-value=18 Score=21.99 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=43.1
Q ss_pred ccceeeccccCCCCc----hHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEP----AHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
.-++||+..-. .+ ....+.++..+||+|..+.+. |.-+|-..+++.+...+.. ++..+..+
T Consensus 17 ~l~V~nLp~~~--~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 17 VIVVDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEEESCCCCC--TTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEEeCCCcch--hhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 35688887543 22 567788999999999888764 3457888899988888864 44444433
No 89
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=67.46 E-value=18 Score=22.17 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhCCeeEEEcC-----------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 68 AHRVLGNMADKYGPIFTMKLG-----------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~-----------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
...-+.+...+||+|..+.+. |.-+|-..+++.+...+.. ++..|..|.
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 345677778899999988863 2346778899988887753 555655554
No 90
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=66.73 E-value=13 Score=23.42 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=43.6
Q ss_pred CCCCccccceeeccccCC------CCchHHHHHHHHHHhCCeeEEEcC-----CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 47 PEAGGAWPLIGHLHILRG------SEPAHRVLGNMADKYGPIFTMKLG-----VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~------~~~~~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
|+.|...-.|-|+..... ..+....+.+...+||.|..+.+. |.-+|-..+++.+...+.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 334445566777654421 023344556777889999888752 4457778899888877753 5566655
Q ss_pred CC
Q 048689 115 RP 116 (239)
Q Consensus 115 ~~ 116 (239)
|.
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 91
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=66.11 E-value=15 Score=22.61 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCccccceeeccc---cCCCCchHHHHHHHHHHhCCeeEEEcC----------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 49 AGGAWPLIGHLHI---LRGSEPAHRVLGNMADKYGPIFTMKLG----------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 49 ~p~~~p~lG~~~~---~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
.|...-++.|+.. +. .+....+.+.+.+||+|..+++. |.-+|-..+++.+...... ++..|..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~--dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVD--EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC-----CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhh--HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3445667777763 22 34567788888999998887652 2246778899988877753 5555554
Q ss_pred CC
Q 048689 115 RP 116 (239)
Q Consensus 115 ~~ 116 (239)
|.
T Consensus 84 r~ 85 (105)
T 2pe8_A 84 RV 85 (105)
T ss_dssp EE
T ss_pred cE
Confidence 44
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=64.98 E-value=19 Score=21.40 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=38.0
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeE--------EEcC---------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFT--------MKLG---------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~--------~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
..-++||+..-. ....+.++..+||.|.. +.+. |.-+|...+++.++..+.. ++..+.
T Consensus 14 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 14 NTIFVQGLGENV----TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp SEEEEECCCSSC----CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345678876432 24567788889998866 5431 1346778899999888853 444443
Q ss_pred C
Q 048689 114 G 114 (239)
Q Consensus 114 ~ 114 (239)
.
T Consensus 90 g 90 (99)
T 2la6_A 90 G 90 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=61.56 E-value=26 Score=21.69 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=40.7
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
-++||+..-.. ...+.++..+||+|..+.+. +.-+|...+++.++..+.. +...+..+.
T Consensus 19 l~V~nLp~~~t----~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPSGS----WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSSCC----TTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCCCC----HHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 56788865332 34456777899999888764 5577888999999988863 444554443
No 94
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=61.12 E-value=21 Score=22.46 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=44.9
Q ss_pred CccccceeeccccC-CCCchHHHHHHHHHHhCCeeEEEcC-------------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 50 GGAWPLIGHLHILR-GSEPAHRVLGNMADKYGPIFTMKLG-------------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 50 p~~~p~lG~~~~~~-~~~~~~~~~~~~~~~yG~i~~~~~~-------------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
|...-++.|+..-. -..+...-+.+.+.+||+|..+.+. |.-+|-..+++.+...... ++..|..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 44566778875431 1156778888889999998887642 2235667899988877653 5566655
Q ss_pred CC
Q 048689 115 RP 116 (239)
Q Consensus 115 ~~ 116 (239)
|.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 95
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.29 E-value=27 Score=21.21 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=37.6
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--CeeEEEeCCHHHHHHHHHh
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~ 107 (239)
-++||+..- -....+.++..+||+|..+.+. +.-+|-..+++.++..+..
T Consensus 18 l~V~nLp~~----~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLPPS----GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCCSS----CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCC----CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 467777643 2356678888999999888763 5678888999999988863
No 96
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=58.93 E-value=29 Score=21.42 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=38.6
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
-++||+..-. ....+.++..+||+|..+++. +.-+|-..+++.++..+.. ++..+.
T Consensus 8 lfV~nLp~~~----te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 8 IFIKNLDKSI----DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEECCCCCCC----CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4677776432 246678888999999877652 2247889999999998853 444333
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=58.33 E-value=30 Score=21.58 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=36.6
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCcccC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+..++..+.
T Consensus 40 ~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 103 (124)
T 2jwn_A 40 YVGNVDYGS----TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR 103 (124)
T ss_dssp EEEEECTTC----CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC
Confidence 566665422 245677888899998877652 2346888999999999843433333
No 98
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.26 E-value=24 Score=20.18 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=35.3
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 6 ~~l~v~nlp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQPGT----TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CEEEEESCCTTC----CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 345677775432 235567777889998887642 234678899999988875
No 99
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=57.82 E-value=25 Score=20.22 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=37.2
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTND 109 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~ 109 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..++
T Consensus 12 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 12 GKMFVGGLSWDT----SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp TEEEEECCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 345678876432 345677888899998877652 124677889999999986433
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.08 E-value=34 Score=21.62 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=38.7
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
+|...-++||+..-. ....+.++..+||.|..+.+. +.-+|-..+.+.+..++.
T Consensus 29 ~ps~~LfVgNLp~~v----te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SCCSEEEEESCCTTC----CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 344456788877532 245677888999998887753 446788889999988875
No 101
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=56.82 E-value=43 Score=22.65 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=37.2
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-----CeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-----VKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
++||+..- -....+.+...+||+|-++++. +.-+|-..|++.+...... ++..+
T Consensus 50 ~VgNL~~~----vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFYP----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCSC----CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCCC----CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 46777532 2345678889999999887763 2457888899988888763 44444
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.08 E-value=31 Score=20.90 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=39.7
Q ss_pred CCCCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 47 PEAGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 47 p~~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
+.+|...-++||+..- -....+.++..+||.|..+.+. +.-+|-..+.+.+...+.
T Consensus 11 ~~~p~~~l~V~nLp~~----~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGE----VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CSSCCSEEEEESCCTT----CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 3344455678888752 2345677888999999887753 446788899999988875
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.58 E-value=35 Score=21.01 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=37.9
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
..-++||+..-. ....+.++..+||.|..+.+. +.-+|-..+++.+...+.
T Consensus 17 ~~LfV~nLp~~v----te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 17 RVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CEEEECSCCTTS----CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 456688876532 245577888999999888763 446888899999988875
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.53 E-value=30 Score=20.22 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=40.8
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++.. +...+..+.
T Consensus 6 ~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 6 SGLYVGSLHFNI----TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 345677776432 2455778889999988877522 346788999999998863 444444444
No 105
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=52.30 E-value=36 Score=20.40 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=37.6
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
-++||++.-. ....+.++..+||+|..+.+.. .-+|-..+++.+...+.. ++..+.
T Consensus 22 lfV~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 22 LIVNYLPQNM----TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677776532 2456778888999998876521 236778899999888753 444433
No 106
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=52.19 E-value=59 Score=22.91 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred cceeeccc-cCCCCchHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHH-hCCcccCCCC
Q 048689 54 PLIGHLHI-LRGSEPAHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFT-TNDKAFAGRP 116 (239)
Q Consensus 54 p~lG~~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~-~~~~~~~~~~ 116 (239)
-++||+.. -. ....+.++..+||+|..+.+. +.-+|-..+++.++..+. -++..+..+.
T Consensus 37 l~V~nLp~~~~----te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPERV----TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTTTC----CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcccC----CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 46777765 22 236677888899999888764 446888999999999885 3444444443
No 107
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.18 E-value=38 Score=20.74 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=40.6
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
-++||+.. .-....+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+..+.
T Consensus 13 l~V~nLp~----~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 13 ILAKNLPA----GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEESCCT----TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 45666653 23356678888999999888763 3467888999999888753 445555444
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.49 E-value=39 Score=20.33 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=39.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeE-EEcC--------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFT-MKLG--------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~-~~~~--------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
.-++|++..-. ....+.++..+||.|.. +.+. |.-+|-..+++.++..+..+...+..|.
T Consensus 17 ~l~V~nLp~~~----te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPFGC----SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEEESCCTTC----CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34677776533 24567788888998765 5431 3467888999999999976444444443
No 109
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=50.03 E-value=42 Score=20.59 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=36.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
--++||+..-. ....+.++..+||+|..+.+. |.-+|...+++.++..+.
T Consensus 8 ~lfV~nL~~~~----te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 8 EVTFARLNDNV----RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH
Confidence 45678876432 346677888999999887652 124788899999999885
No 110
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.89 E-value=31 Score=21.13 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=36.0
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCccc
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAF 112 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~ 112 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..+...+
T Consensus 29 ~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 91 (114)
T 2cq4_A 29 FCMQLAARI----RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 91 (114)
T ss_dssp EEESCCTTC----CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe
Confidence 566665422 245577888999999888763 234677888988888874344333
No 111
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=48.66 E-value=44 Score=20.36 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=36.5
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTN 108 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~ 108 (239)
-++||+..- -....+.++..+||+|..+.+. |.-+|-..+++.+..++...
T Consensus 28 lfV~nLp~~----~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 28 MFIGGLSWQ----TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp EEEESCCTT----CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEEeCCCCC----CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 467776542 2245577888899999888753 23478889999999998644
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.47 E-value=35 Score=20.94 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=35.3
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 30 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 30 LFIGGLSFET----TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEEECCTTCC----CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 3567765432 245577888999998777652 2356778899999999865
No 113
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=48.16 E-value=43 Score=20.11 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=37.4
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
.-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. +...+
T Consensus 31 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 31 KLLVSNLDFGV----SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 35677765432 245577888899999777653 2346778899999988863 44333
No 114
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.98 E-value=41 Score=19.83 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.5
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 10 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 10 RLFVRNLSYTS----SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEEECCCTTC----CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 34577776432 235677888899999888763 2357888999999998843
No 115
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=47.79 E-value=53 Score=21.13 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=36.9
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC-----eeEEEeCCHHHHHHHHHh-CCccc
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV-----KQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-----~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
++||+..- -....+.++..+||+|-.+.+.. .-+|-..+++.++..+.. ++..+
T Consensus 32 ~V~NL~~~----vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 32 IVENLFYP----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp EEESCCSC----CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EECCCCCC----CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 47887532 22456788999999988877532 257888899888877653 44443
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=47.45 E-value=43 Score=19.98 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=39.6
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+.. +...+.
T Consensus 13 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 13 VLFVRNLANTV----TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 35677776432 245677888899999888763 3467788999999988863 444333
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.22 E-value=42 Score=19.79 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=41.2
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
.--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..+...+..+.
T Consensus 11 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 11 NKIFVGGIPHNC----GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp CEEEEESCCSSC----CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 345678776433 245577888899999888763 2357788999999999864444444443
No 118
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.97 E-value=45 Score=20.02 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCccc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAF 112 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~ 112 (239)
.+....+.+....||.|..+++ .++-+|...|.+.+..++.-++...
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v 73 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKEL 73 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEe
Confidence 3455667777778999998886 4556888889999988875444433
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=46.85 E-value=49 Score=20.45 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=39.7
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhC-CeeEEEcC-----CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYG-PIFTMKLG-----VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
--++||+..- -....+.++..+|| .|..+.+. |.-+|-..+++.++..+.. ++..+.
T Consensus 30 ~l~VgnLp~~----~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 30 RITMKNLPEG----CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp EEEEECSSCC----CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred EEEEECCCCC----CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4567887653 23566788889999 78777663 4568889999999988853 333333
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.61 E-value=32 Score=19.03 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCC
Q 048689 70 RVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTND 109 (239)
Q Consensus 70 ~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~ 109 (239)
..+.++..+||+|..+.+. +.-+|-..+++.+...+...+
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4467777889988766542 224566778999988886443
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.51 E-value=18 Score=22.23 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred cccceeeccccCCCCchHHHHH---HHHHHhCCeeEEEcC------------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLG---NMADKYGPIFTMKLG------------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~---~~~~~yG~i~~~~~~------------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
..-++||+..-.. . ..+. ++..+||+|..+.+. +.-+|-..+++.++..+.. +...+..+
T Consensus 16 ~~l~V~nLp~~~~-~---~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 16 NLVFVVGLSQRLA-D---PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp SCEEEEEECTTTC-C---HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEEEECCCCCCC-H---HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457888875432 2 2344 777889998887653 2456778899999998864 54444433
No 122
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.49 E-value=42 Score=19.52 Aligned_cols=52 Identities=23% Similarity=0.184 Sum_probs=36.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
..-++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 16 ~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 16 CCLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GCEEEESCCSSC----CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 445678876532 245678888899998887652 1246778899999998863
No 123
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=46.28 E-value=59 Score=21.19 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=37.2
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHhCCcccC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
-++||+..- -....+.+...+||+|..+.+.. .-+|-..+++.+..++..+...+.
T Consensus 90 l~V~nlp~~----~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 90 IFVGGIGPD----VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp EEEEEECTT----CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred EEECCCCCC----CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 356666542 23456778888999988877532 346788899999999864333333
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=46.18 E-value=46 Score=19.88 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=35.3
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
.+-++||+..=. -...+.++..+||+|..+++. |.-+|-..+++.+.....
T Consensus 8 ~wL~VgNL~~~~----te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 8 SWLLLKNLTAQI----DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CEEEEECCCTTC----CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEeCCCccC----CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 345678875432 237788999999999888752 345777888877766654
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=45.90 E-value=45 Score=19.75 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 69 HRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
...+.++..+||+|..+.+. +.-+|-..+++.+..++.. ++..+..+.
T Consensus 14 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 14 KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 45677888999998777752 3457788999999988863 333344333
No 126
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=45.75 E-value=41 Score=23.24 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=35.8
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHhC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTTN 108 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~~ 108 (239)
++|++.. .-....+.++..+||+|..+++. |.-+|-..+++.++..+...
T Consensus 113 ~V~nLp~----~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 113 YIKGFPT----DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEECCCT----TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred EecCCCC----cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 4566653 23457788888999998877643 33577888999999998643
No 127
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=45.70 E-value=42 Score=19.37 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=39.2
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
--++||+..- -....+.++..+||+|..+.+. +.-+|-..+++.++..+.. +...+..+
T Consensus 10 ~l~V~nlp~~----~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 10 QIFVRNLPFD----FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEEECSCCTT----CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3467777643 2346678888899998877653 2346778899999988763 44444433
No 128
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=45.08 E-value=71 Score=22.21 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=40.3
Q ss_pred cccceeecc-ccCCCCchHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLH-ILRGSEPAHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~-~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
..-++||+. .-. ....+.++..+||+|..+.+. |.-+|-..+++.+...+.. ++..+.
T Consensus 5 ~~l~V~nL~~~~~----~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 5 PVLMVYGLDQSKM----NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp SEEEEECCCTTTC----CHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCcccC----CHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345788886 322 234677888999999988763 4578889999999888752 444333
No 129
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.94 E-value=47 Score=19.63 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=38.9
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. +...+.
T Consensus 18 ~~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 18 HKLFISGLPFSC----TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp SCEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345677776532 245577888899998887753 2357788999999998853 443333
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=44.89 E-value=51 Score=20.05 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=37.9
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
-++||+..-. ....+.++..+||+|..+.+ -+.-+|-..+++.+...+.. ++..+
T Consensus 34 l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 34 LFVRPFPLDV----QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EEECSSCTTC----CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3566665422 24567888899999877765 45567888999999988853 44443
No 131
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=44.80 E-value=42 Score=19.09 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=35.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 107 (239)
--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++..+..
T Consensus 8 ~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 8 HVFVGDLSPEI----TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34567765432 2455778888999988776521 246778899999998863
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=44.58 E-value=48 Score=19.64 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=36.2
Q ss_pred cceeeccc-cCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHH
Q 048689 54 PLIGHLHI-LRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFT 106 (239)
Q Consensus 54 p~lG~~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~ 106 (239)
-++||+.. -. ....+.++..+||+|..+.+ -+.-+|-..+++.+..++.
T Consensus 25 l~V~nLp~~~~----t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 25 LFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp EEEESCCSSCC----CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 46777764 22 23557788899999988876 3456788889999998886
No 133
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=44.13 E-value=44 Score=19.11 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCcccC
Q 048689 69 HRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
...+.++..+||+|..+.+. +.-+|-..+++.++.++.-++..+.
T Consensus 20 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 20 AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 45577888899998877642 1346778899999888843444443
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=43.92 E-value=62 Score=20.96 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHH-hCCcccCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFT-TNDKAFAG 114 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~-~~~~~~~~ 114 (239)
++||+..- -....+.++..+||+|..+.+. +.-+|-..+++.+...+. -++..+..
T Consensus 4 ~V~nlp~~----~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 4 YVGNLDKA----ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp EEEEEETT----CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EECCCCCc----CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 35665532 2245677888999999887752 235788889999999884 34444433
No 135
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=43.89 E-value=57 Score=20.30 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=40.6
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+.
T Consensus 25 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 25 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4677776432 345677888899999888762 2357889999999998853 555554444
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=43.75 E-value=56 Score=20.17 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=40.1
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. ++..+..+.
T Consensus 9 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 9 KLFIGGLNRET----NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEEEECCTTTC----CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34577776432 245677888999998777653 3457888999999998863 444444443
No 137
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=43.36 E-value=36 Score=20.79 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCeeEEEcCCe-eEEEeCCHHHHHHHHH
Q 048689 68 AHRVLGNMADKYGPIFTMKLGVK-QALVVSNWEIAKECFT 106 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~~~-~~v~v~~p~~i~~il~ 106 (239)
-..-+.++...||.+.--|+-.. -.+++.+|+.+++++.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 35677888889997665566433 5788999999999986
No 138
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=42.96 E-value=70 Score=21.12 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhC--CeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 69 HRVLGNMADKYG--PIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 69 ~~~~~~~~~~yG--~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
...+.++..+|| +|..+.+. |.-+|-..+++.+..++..
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 466788889999 88887752 1347888999999999865
No 139
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=42.88 E-value=65 Score=21.70 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=39.0
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHhCCccc
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTTNDKAF 112 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~ 112 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|...+++.+...+..+...+
T Consensus 15 ~l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 15 KLFIGGLSFET----TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 35678876532 245677888999998777642 134788899999999986544333
No 140
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=42.61 E-value=54 Score=19.75 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=36.0
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+.
T Consensus 29 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 29 LFVTSIHEEA----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 4677776532 245577888999999888763 335788899999998886
No 141
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.01 E-value=54 Score=19.55 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=38.7
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHhCCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
.--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++..+...+.
T Consensus 17 ~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~ 83 (105)
T 2dh8_A 17 GKLFVGGLDWST----TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 83 (105)
T ss_dssp SEECCBSCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEET
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeEC
Confidence 345677776432 2455778888999988776522 246778899999999876443333
No 142
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.89 E-value=58 Score=19.89 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=37.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHhC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTTN 108 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~ 108 (239)
--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++...
T Consensus 19 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 19 KIFVGGLPYHT----TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp EEEEECCCSSC----CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC
Confidence 35677776432 2455778888999998887632 3477889999999998643
No 143
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.70 E-value=54 Score=19.45 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=34.3
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 11 l~V~nlp~~~----~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 11 VFVGNIPYEA----TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp EEEESCCTTS----CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHH
T ss_pred EEEeCCCCcC----CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 4567765422 245577888899998777652 234677889999999985
No 144
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=41.54 E-value=58 Score=19.74 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHH-HHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 71 VLGNMA-DKYGPIFTMKLG--------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 71 ~~~~~~-~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
-+.+.. .+||+|..+.+. |.-+|-..+++.+...... ++..+..|.
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 344555 899999888864 2346778899988887753 455554443
No 145
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.35 E-value=51 Score=19.09 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=37.0
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~ 106 (239)
..-++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++..+.
T Consensus 17 ~~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 17 STVYVSNLPFSL----TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp TSEEEESCCTTS----CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 445678876432 2455788889999998887632 34788899999999885
No 146
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=41.12 E-value=64 Score=20.15 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=38.1
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
-++||+ . -....+.++..+||+|..+.+. +.-+|...+++.+...+.. ++..+..+
T Consensus 42 lfVgnl-~-----~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 42 LYVYGE-D-----MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp EEEECS-S-----CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred EEEcCC-C-----CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467772 2 2356678888999998777754 4467888899999888753 44444433
No 147
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.65 E-value=57 Score=19.38 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. +...+..+
T Consensus 15 ~l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 15 TLKVDNLTYRT----SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 35678776532 245677888899999888763 2347888899999888863 44444433
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=40.61 E-value=61 Score=19.71 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=39.4
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEc---CCeeEEEeCCHHHHHHHHH
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL---GVKQALVVSNWEIAKECFT 106 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~---~~~~~v~v~~p~~i~~il~ 106 (239)
+|...-++||+..-. ....+.++..+||+|..+.+ -+.-+|-..+.+.++..+.
T Consensus 19 ~ps~~l~V~NLp~~~----te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGV----VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 344567788887532 24567888899999988765 3457888889999988875
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=39.89 E-value=55 Score=19.00 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=35.8
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHH
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~ 106 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 18 ~l~v~nlp~~~----~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 18 TVFVGNLEARV----REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 45677776532 245678888999999887753 234677889999998886
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=39.39 E-value=90 Score=21.37 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=38.3
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+..
T Consensus 31 l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 31 VYVGSIYYEL----GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred EEEECCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 3566665432 245677888999999888762 3357888999999999863 4444433
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.35 E-value=58 Score=19.11 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=35.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 107 (239)
--++||+ .. ....+.++..+||+|..+.++ +.-+|-..+++.+...+..
T Consensus 17 ~l~V~n~-~~-----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 17 TLYVYGE-DM-----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEEEECS-SC-----CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEcCC-CC-----CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3467773 22 246678888999999888764 3457788899999998854
No 152
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=39.35 E-value=72 Score=20.18 Aligned_cols=59 Identities=24% Similarity=0.223 Sum_probs=39.7
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
..-++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. ++..+..
T Consensus 47 ~~l~V~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 47 CCLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp SCBCEETCTTSC----CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345677776532 235577888999999888762 2346788999999998863 4444433
No 153
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.12 E-value=39 Score=19.43 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=34.0
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECF 105 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il 105 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.+.
T Consensus 8 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 8 VFVGRCTGDM----TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEESCCSSS----CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEeCCCCCC----CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 4567765432 245677888899999888764 34578889999987653
No 154
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=38.96 E-value=54 Score=18.62 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=37.1
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. ++..+.
T Consensus 7 l~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 7 VHIGRLTRNV----TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 3566665422 245667788899999877652 2347888899999998863 444433
No 155
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=38.64 E-value=84 Score=20.78 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=37.7
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
-++||+..- -....+.++..+||+|..+.+. +.-+|-..+++.+..++.. ++..+
T Consensus 75 l~V~nLp~~----~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 75 LFVTSIHEE----AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp EEEESCCTT----CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCC----CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 466776642 2346678888999998887653 2356778899999988853 44333
No 156
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=38.45 E-value=77 Score=23.20 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=41.7
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+..++..+..+.
T Consensus 42 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 42 TTVLVKNLPKSY----NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp CEEEEEEECTTC----CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 345678876532 245677888899998877652 3457889999999999854444444443
No 157
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=38.41 E-value=53 Score=18.41 Aligned_cols=44 Identities=7% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 69 HRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
...+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 45567778899998877652 2247888999999998863 33333
No 158
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.21 E-value=63 Score=19.25 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=41.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC----------eeEEEeCCHHHHHHHHHh--CCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV----------KQALVVSNWEIAKECFTT--NDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----------~~~v~v~~p~~i~~il~~--~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.+..++.. +...+..+.
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 16 SKILVRNIPFQA----NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CEEEEeCCCCcC----CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345678876532 2455778889999998887632 246778899999998864 444444443
No 159
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=38.20 E-value=66 Score=19.48 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=38.5
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. ++..+..+
T Consensus 29 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 29 LYVGSLHFNI----TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp EEEECCCSSC----CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4677775432 345577888999998777652 2346788999999998853 44444333
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=38.17 E-value=86 Score=21.74 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+..
T Consensus 16 ~tlfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 16 ASLYVGDLHPDV----TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 335788876532 246677888999999887652 1247888999999988854
No 161
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=38.02 E-value=1.1e+02 Score=24.35 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=39.1
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
.-++||+..-. ....+.++..+||+|..+.+. +.-+|.+.+++.+..++.. ++..+.
T Consensus 104 ~lfV~nL~~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 104 TLFVARVNYDT----TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 45678775432 245677888889999888762 2357888899999988854 444443
No 162
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=37.65 E-value=59 Score=18.75 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=34.9
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhC--CeeEEEcCC---------eeEEEeCCHHHHHHHHH-hCCcccCCCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYG--PIFTMKLGV---------KQALVVSNWEIAKECFT-TNDKAFAGRP 116 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~---------~~~v~v~~p~~i~~il~-~~~~~~~~~~ 116 (239)
++||+..-. ....+.++..+|| +|..+.+.. .-+|-..+++.++..+. -++..+..+.
T Consensus 5 ~V~nL~~~~----t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWWT----TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCCC----CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 356654322 2456777888999 876665421 24677889999988874 2344444443
No 163
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.41 E-value=62 Score=18.92 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=38.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. +...+.
T Consensus 7 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 7 GLFIKNLNFST----TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 44677776432 245677888899998777653 2346778899999999864 333333
No 164
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=37.19 E-value=66 Score=19.16 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=38.3
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. ++..+..
T Consensus 26 l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 26 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 4677766532 245577888999999887752 2346778899999988863 4444433
No 165
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.75 E-value=67 Score=19.09 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=41.0
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
--++|++..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++.. +...+..+.
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDEKV----SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 35678776532 2455788889999998887632 347888999999999864 444444443
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.00 E-value=63 Score=18.56 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=40.0
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+.
T Consensus 10 ~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 10 WKIFVGNVSAAC----TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCEEEESCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345678876532 245577888899999888763 3467788999999988763 444343
No 167
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.97 E-value=64 Score=18.63 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=39.7
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+.. +...+.
T Consensus 11 ~~l~V~nLp~~~----t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 11 TKLHVGNISPTC----TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp EEEEEESCCSSC----CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 345678876432 346677888999999888763 3456778899999988853 444443
No 168
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.24 E-value=75 Score=19.24 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=37.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
..-++||+..- -....+.++..+||.|..+.+. +.-+|-..+.+.+...+.
T Consensus 16 ~~l~V~nLp~~----~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCES----VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp SEEEEESCCSS----CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCC----CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 45678887642 2346678888999999888753 346788889998888875
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=35.03 E-value=35 Score=20.31 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=34.2
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~ 106 (239)
-++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.
T Consensus 12 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDVRM----DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 4577776422 245577888999999877652 234677789998988885
No 170
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=34.95 E-value=62 Score=18.20 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=36.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
..-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+.
T Consensus 8 ~~l~V~nl~~~~----~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 8 RVLYVGGLAEEV----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp SEEEEECCCTTC----CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 345677776432 246677888899999888752 224788889999998884
No 171
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=34.63 E-value=67 Score=19.01 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=35.3
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----------CeeEEEeCCHHHHHHHHHhCCcccCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----------VKQALVVSNWEIAKECFTTNDKAFAG 114 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~~~~~~~~ 114 (239)
++||+..-.. ...+.++..+|| |..+.+. |.-+|-..+.+.++..+..++..+..
T Consensus 23 ~V~nLp~~~t----~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 23 FLGNLPYDVT----EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp EESCCSSCCS----SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred EEeCCCCCCC----HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 5677654322 234566677899 8888763 23468889999999988434444433
No 172
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=34.54 E-value=78 Score=19.23 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=38.4
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
.--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++.. +...+.
T Consensus 26 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 26 ANLFIYHLPQEF----GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CCEEEESCCSSC----CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345678876533 2466778888999987776421 246778899999988853 343333
No 173
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.09 E-value=75 Score=18.87 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----------CeeEEEeCCHHHHHHHHHhCCcccC
Q 048689 49 AGGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----------VKQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 49 ~p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
.+..--++||+..-. ....+.++..+|| |..+.+. +.-+|-..+++.++.++..+...+.
T Consensus 13 ~~~~~l~V~nlp~~~----t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDV----TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSC----CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEET
T ss_pred CCCCEEEEeCCCCcC----CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeC
Confidence 333445678876432 2455677888899 8888763 1246888999999998843444443
No 174
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.93 E-value=75 Score=18.80 Aligned_cols=62 Identities=18% Similarity=0.054 Sum_probs=41.1
Q ss_pred CccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 50 GGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 50 p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
+..--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. +...+..+
T Consensus 14 ~~~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDDGI----DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCTTC----CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 33456788876533 235567778889998887753 2346778999999998863 44444433
No 175
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.84 E-value=80 Score=19.11 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHhCCccc
Q 048689 66 EPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTTNDKAF 112 (239)
Q Consensus 66 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~ 112 (239)
.+....+.+....||.+..+++ ..+-+|...|.+.+..++.-+....
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeee
Confidence 3455557777778999888875 5556777889998888775444433
No 176
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.78 E-value=42 Score=19.96 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=36.2
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT 107 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 107 (239)
..-++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 16 ATIRVTNLSEDT----RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEEESCCTTC----CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 345678776532 2355677788899988877531 246788999999999863
No 177
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=33.19 E-value=81 Score=18.99 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=38.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
--++|++..-. -....+.++..+||+|..+.+ -+.-+|-..+++.++.++.. +...+.
T Consensus 29 ~l~V~nl~~~~---~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 29 RVFIGNLNTAL---VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp EEEECSCCCSS---CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCccc---CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34677766530 224667888899999887775 23456778899999888743 444333
No 178
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=33.03 E-value=75 Score=18.56 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccceeeccc-cCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHI-LRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
--++|++.. -. ....+.++..+||+|..+.+ -+.-+|-..+++.+..++.. ++..+..+
T Consensus 12 ~l~V~nlp~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 12 RLFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp EEEEESSTTSCC----CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 456788774 32 23557788889999888876 34567888999999999863 44444433
No 179
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.00 E-value=78 Score=18.72 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=39.0
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++.. +...+.
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 17 RLHVSNIPFRF----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678776432 245577888899999887752 3457888999999998863 444443
No 180
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=32.67 E-value=1e+02 Score=20.01 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=39.7
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
..-++||+..-. ....+.++..+||+|..+.+. +.-+|...+++.++.++.. +...+.
T Consensus 40 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 40 CTLYVGNLSFYT----TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345677776432 346678888999999888762 1237788999999999864 444443
No 181
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=32.48 E-value=87 Score=19.10 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=34.3
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+..
T Consensus 44 ~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQEF----TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCTTC----CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 566665422 246677888899999888763 2346778899999888863
No 182
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.32 E-value=80 Score=18.67 Aligned_cols=54 Identities=15% Similarity=-0.051 Sum_probs=37.4
Q ss_pred CccccceeeccccCCCCchHHHHHHHHHH-hCCeeEEEcC--------CeeEEEeCCHHHHHHHHHh
Q 048689 50 GGAWPLIGHLHILRGSEPAHRVLGNMADK-YGPIFTMKLG--------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 50 p~~~p~lG~~~~~~~~~~~~~~~~~~~~~-yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 107 (239)
+..--++||+..-. ....+.++..+ ||+|..+.+. +.-+|-..+++.+..++..
T Consensus 8 ~~~~l~V~nLp~~~----t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 8 PEYSLFVGDLTPDV----DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CCCCEEEECCCTTC----CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCC----CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 33445688876533 24556777788 9998877652 2346778999999999863
No 183
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.31 E-value=70 Score=17.99 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=36.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 107 (239)
--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+..
T Consensus 14 ~l~V~~l~~~~----t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGDTI----TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTTTS----CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCCCC----CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 35677776432 245677888899998887753 3467888899999999863
No 184
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=32.26 E-value=73 Score=18.20 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=30.8
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
++||+..- -....+.++..+||+|..+.+. +.-+|-..+++ +...+..
T Consensus 5 ~V~nLp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 5 YVGNLVYS----ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEEECTT----SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred EECCCCCC----CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 35555432 2235567777889998877753 12467788999 7777653
No 185
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.98 E-value=48 Score=20.63 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=37.1
Q ss_pred cccceeecccc-CCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHIL-RGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~-~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
..-++||+..- . ....+.++..+||+|..+++. +.-+|-..+++.+...+.
T Consensus 26 ~~l~V~NLp~~~~----te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 26 RVIHLSNLPHSGY----SDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CEEEEESCCCSSC----CSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCccC----CHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 45678888753 2 234577888999998888764 346788889998888875
No 186
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.54 E-value=47 Score=20.38 Aligned_cols=53 Identities=6% Similarity=-0.103 Sum_probs=35.5
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCe-eEEEc--------CCeeEEEeCCHHHHHHHHHhCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPI-FTMKL--------GVKQALVVSNWEIAKECFTTND 109 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i-~~~~~--------~~~~~v~v~~p~~i~~il~~~~ 109 (239)
.-++||+..-. ....+.++..+||.| ..+.+ -+.-+|-..+++.++..+..+.
T Consensus 17 ~l~V~nLp~~~----t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~ 78 (114)
T 2cpy_A 17 CAHITNIPFSI----TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 78 (114)
T ss_dssp EEEEESCCTTS----CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCS
T ss_pred EEEEeCcCCcC----CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 35677776533 235577777889988 33333 2346788899999999986533
No 187
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.39 E-value=86 Score=18.74 Aligned_cols=51 Identities=8% Similarity=-0.017 Sum_probs=36.6
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCC-eeEEEcC----------CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGP-IFTMKLG----------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~~----------~~~~v~v~~p~~i~~il~~ 107 (239)
--++||+..-. ....+.++..+||+ |..+.+. +.-+|-..+++.+...+..
T Consensus 10 ~l~V~nLp~~~----t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 10 RLFIGGIPKMK----KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEECCCTTS----CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEEeCCCCcC----CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 34677776422 24567788889998 8887764 2357788999999999863
No 188
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.09 E-value=83 Score=18.45 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=39.4
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. +...+..+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 17 RLFVGNLPPDI----TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp EEEEESCCTTC----CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCCCC----CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 45678876532 245577888999998887753 3456778899999888743 44444433
No 189
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.99 E-value=90 Score=18.82 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHHh
Q 048689 68 AHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~ 107 (239)
....+.++..+||+|..+.+. |.-+|-..+++.+...+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 467788999999999888763 3457888999999999864
No 190
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.58 E-value=66 Score=20.32 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=34.6
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCe----eEEEc-----C---CeeEEEeCCHHHHHHHHHhCCc
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPI----FTMKL-----G---VKQALVVSNWEIAKECFTTNDK 110 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i----~~~~~-----~---~~~~v~v~~p~~i~~il~~~~~ 110 (239)
.-++||+..- -....+.++..+||+| -.+.+ + |.-+|-+.+++.++..+..+..
T Consensus 25 ~v~V~nLp~~----~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~ 90 (123)
T 2dha_A 25 IVRMRGLPFT----ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKD 90 (123)
T ss_dssp EEEECSCCTT----CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTE
T ss_pred EEEEeCCCCC----CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCC
Confidence 4557776543 2346677888889875 22322 1 2347888899999999865433
No 191
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=29.45 E-value=1e+02 Score=21.84 Aligned_cols=61 Identities=7% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccc-ccCCchhHHHHHHHHHH
Q 048689 167 EVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKR-YTSQSQEVNDWQQQITK 230 (239)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~-~~~~~~~~~~~~~~~~~ 230 (239)
.+.+|++.+... ...+++|..--+.-.+.......++++..|+. +...+++..++.+..++
T Consensus 19 ti~eFl~~laS~---~P~PGGGsaAAl~gAlgaAL~~MVanLT~gKkky~~~e~~~~~i~~~~~~ 80 (214)
T 1o5h_A 19 SLKEFCDMVAER---KPTPGGGAVGSVVGAMACALAEMVANFTRKKKGYEDVEPEMERIVEAMEE 80 (214)
T ss_dssp BHHHHHHHHHSS---SSSSCHHHHHHHHHHHHHHHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC---CCCCCcHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Confidence 356777777432 34444455556666777777788888889886 33333444444444443
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.01 E-value=98 Score=18.66 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=34.5
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHH
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~ 106 (239)
-++|++..- -....+.++..+||+|..+.+. +.-+|-..+++.++..+.
T Consensus 32 l~V~nLp~~----~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 32 LHVSNIPFR----FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp EEEESCCTT----CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred EEEECCCCc----CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 356666542 2345677888999998777753 345777889998888875
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=28.90 E-value=1.6e+02 Score=21.21 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=41.6
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
.--++||+..-....+....+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4457888875432233344467888999999888743 2457888999999988843 3333333
No 194
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.86 E-value=99 Score=18.67 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=37.9
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCe----eEEEc--C---CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPI----FTMKL--G---VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i----~~~~~--~---~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
.--++||+..-. ....+.++..+||+| ..+.. + +.-+|-..+++.+..++.. +...+..+
T Consensus 26 ~~l~V~nLp~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 26 KVLYLKNLSPRV----TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SEEEEECCCTTC----CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 445678876432 245567788889976 44432 1 3457888999999998864 44444333
No 195
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.82 E-value=91 Score=18.20 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=39.9
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCee-EEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIF-TMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~-~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|. .+.+. +.-+|-..+++.++..+.. ++..+..+.
T Consensus 10 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 10 ASLWMGDLEPYM----DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SEEEECSCCTTC----CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 345678876432 2456778888999988 76642 2246778899999999863 344444443
No 196
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.31 E-value=88 Score=17.89 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=41.0
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEc-CCeeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKL-GVKQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|..+.+ -+.-+|-..+++.++..+.. +...+..+.
T Consensus 9 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 9 VKLFIGNLPREA----TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEEEESCCSSC----CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred eEEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 345678776532 24557888899999888775 34567888999999988853 343444433
No 197
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.17 E-value=35 Score=15.34 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 048689 18 ALVIFLSIFL 27 (239)
Q Consensus 18 ~~~~~~~~~~ 27 (239)
++++++++.+
T Consensus 14 ~vLI~vlLi~ 23 (31)
T 1jdm_A 14 IVLITVILMW 23 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 198
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.15 E-value=1.1e+02 Score=19.03 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=38.4
Q ss_pred CCccccce--eeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh
Q 048689 49 AGGAWPLI--GHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 49 ~p~~~p~l--G~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 107 (239)
.|...-++ |++..- -....+.+...+||.|..+.+. +.-+|-..+++.++..+..
T Consensus 23 ~pt~~L~V~Ng~L~~~----~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 23 YATQSLVVANGGLGNG----VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SCCSEEEEETCTGGGT----CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCC----CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34444567 556542 2246778888999999888763 2357888899999888763
No 199
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.13 E-value=1e+02 Score=18.62 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=38.9
Q ss_pred CccccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHH
Q 048689 50 GGAWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 50 p~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 106 (239)
|...-++||+..- .-....+.++..+||.|..+++. +.-+|-..+++.+...+.
T Consensus 14 p~~~l~V~nLp~~---~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRG---KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCS---SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCC---cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 4345668887751 12345577888999999988864 346888899999988875
No 200
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=27.70 E-value=1.2e+02 Score=19.25 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=36.4
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT 107 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 107 (239)
-++||+..- -....+.++..+||+|..+.+.. .-+|-..+++.++.++..
T Consensus 50 l~V~nLp~~----~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 50 LKVDNLTYR----TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp EEEECCCSS----CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 456776542 34566788889999998887632 247888999999999853
No 201
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=27.43 E-value=43 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.746 Sum_probs=13.3
Q ss_pred HHHHHHHhCCeeEEEc
Q 048689 72 LGNMADKYGPIFTMKL 87 (239)
Q Consensus 72 ~~~~~~~yG~i~~~~~ 87 (239)
-.++.+|||.+|++.+
T Consensus 10 ~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 10 TDELKQKYGRVYEIRI 25 (114)
T ss_dssp HHHHHHHHSSEEEEEE
T ss_pred HHHHHHHhCceEEEEe
Confidence 4688999999999865
No 202
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=27.42 E-value=1.3e+02 Score=19.39 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=39.9
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC----CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG----VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+...+.. ++..+..+
T Consensus 75 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 138 (150)
T 2i2y_A 75 KVYVGNLGNNG----NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGC 138 (150)
T ss_dssp EEEEESCCSCC----SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35678876533 224567778889999888763 4467888999999988863 44444333
No 203
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.13 E-value=1e+02 Score=18.64 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCeeEEEcC-----CeeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 69 HRVLGNMADKYGPIFTMKLG-----VKQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 69 ~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
...+.+...+||+|..+.+. |.-+|-..+++.+...+.. ++..+..+
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 45677888899998777652 4457778899999888753 33444433
No 204
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=27.01 E-value=1.3e+02 Score=19.41 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=37.6
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH-hCCcccCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT-TNDKAFAG 114 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~-~~~~~~~~ 114 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+. -++..+..
T Consensus 7 ~v~nlp~~~----~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 7 IVNYLPQDM----TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp EEECCCTTC----CHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 456665422 245577888999999888753 235788899999999885 24444433
No 205
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.97 E-value=1.2e+02 Score=19.12 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=36.2
Q ss_pred eeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---C-eeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 56 IGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---V-KQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 56 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~-~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
+||+..- -....+.++..+||.|-.+++. | .-+|-..|++.+...... ++..+.
T Consensus 30 V~NL~~~----vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 30 IQNPLYP----ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp EESCCSC----CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred EcCcCCC----CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 5776532 2345688899999998777642 3 367888899888777653 444443
No 206
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=26.93 E-value=1.3e+02 Score=19.34 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=36.7
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccCC
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFAG 114 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~ 114 (239)
++||+..- -....+.++..+||+|..+.+. +.-+|-..+++.++..+.. ++..+..
T Consensus 6 ~v~nlp~~----~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 6 IVNYLPQN----MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp EEESCCTT----CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEcCCCCC----CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 35555432 2245577888999998877652 2347788999999999863 4444433
No 207
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=26.90 E-value=1e+02 Score=18.20 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=36.3
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~ 106 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 16 ~~l~v~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 16 RKLFVGMLNKQQ----SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 345678876432 245577888899998887753 234677889999998885
No 208
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=26.68 E-value=83 Score=20.36 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=38.4
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
-++||+..-. ....+.++..+|| +..+.+. +.-+|-..+++.++..+..+...+..|.
T Consensus 49 lfV~nLp~~~----te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 49 VHMRGLPYKA----TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp EECCSCCTTC----CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 4567765432 3466778888899 5577653 2357888999999999854444445454
No 209
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=26.57 E-value=1.3e+02 Score=19.40 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=39.8
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFAGR 115 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~~~ 115 (239)
.-++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.+...+.. ++..+..+
T Consensus 72 ~l~v~nl~~~~----~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 72 SLKVDNLTYRT----SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34567765432 2456778889999998887632 247888999999999864 44444433
No 210
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=26.53 E-value=1.1e+02 Score=18.19 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=36.1
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHH
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~ 106 (239)
--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.+..++.
T Consensus 15 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 15 KLFIGQIPRNL----DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 35677776432 3456788889999998887632 34777889999988885
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=26.27 E-value=38 Score=20.78 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhCCeeEEEcCCe-eEEEeCCHHHHHHHHH
Q 048689 68 AHRVLGNMADKYGPIFTMKLGVK-QALVVSNWEIAKECFT 106 (239)
Q Consensus 68 ~~~~~~~~~~~yG~i~~~~~~~~-~~v~v~~p~~i~~il~ 106 (239)
-..-+.++...||.+.--|+-.. -.+++.+|+.+++++.
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 35667788888996655566433 5788999999999996
No 212
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.14 E-value=1.7e+02 Score=20.36 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=38.5
Q ss_pred CchhHHHHHHHHHhhcChhHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHH
Q 048689 137 GNYWRQSRKIATIELLSNRRLEKLKHVRESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGT 200 (239)
Q Consensus 137 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 200 (239)
...|..+...+.. .|++..+.........+.++-.+.+.+.+.. + ....|+..++.+|
T Consensus 110 ~~k~q~~~~~ls~-~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~---~--~~e~dv~~Fl~~y 167 (192)
T 2p22_C 110 VASWQDYHSEFSK-KYGDIALKKKLEQNTKKLDEESSQLETTTRS---I--DSADDLDQFIKNY 167 (192)
T ss_dssp HHHHHHHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHHHHHSCSC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--cccchHHHHHHHH
Confidence 3455555566666 6999999887777777777777777554321 0 1256777777655
No 213
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=25.97 E-value=1e+02 Score=17.87 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=34.4
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHH
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 106 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 6 ~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 6 YLGSIPYDQ----TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 466665322 245678888899999888763 235778899999998885
No 214
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.76 E-value=1.2e+02 Score=18.16 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=36.8
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 107 (239)
--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 27 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 27 TVYCGGIASGL----TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEEEECCSSCC----CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34677776532 245677888899999888763 4567888999999888853
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.94 E-value=1.2e+02 Score=18.05 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=37.2
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
..-++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 16 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 16 KTVFIRNLSFDS----EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 345678876533 245577788899999888764 2346788899999998863
No 216
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.92 E-value=1.2e+02 Score=17.81 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=40.4
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC---------eeEEEeCCHHHHHHHHHh-CCcccCCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV---------KQALVVSNWEIAKECFTT-NDKAFAGRP 116 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~~~~ 116 (239)
.--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.+..++.. +...+..+.
T Consensus 13 ~~l~v~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 13 GKLFVGGLSFDT----NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SEEEEESCCTTC----CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345678876432 2455778888999988877632 346778899999988853 444444443
No 217
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.57 E-value=1.1e+02 Score=17.58 Aligned_cols=56 Identities=5% Similarity=0.113 Sum_probs=36.5
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC----eeEEEeCCHHHHHHHHHhCCcccC
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV----KQALVVSNWEIAKECFTTNDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~v~~p~~i~~il~~~~~~~~ 113 (239)
-++||+..-. ....+.++..+||+|..+..-. .-+|-..+++.+..++..+...+.
T Consensus 11 l~V~nl~~~~----t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~ 70 (94)
T 2e5g_A 11 VFVSGFPRGV----DSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLG 70 (94)
T ss_dssp EEEECCCTTC----CHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEET
T ss_pred EEEECCCCCC----CHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEEC
Confidence 4577775432 3466778888999987763211 346778899999999863333333
No 218
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.45 E-value=1.2e+02 Score=17.76 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=38.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCccc
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAF 112 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~ 112 (239)
.--++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.. +...+
T Consensus 13 ~~l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 13 RVLYVGGLAEEV----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp SCEEEESCCSSC----CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CEEEEeCCCCCC----CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345678876533 246677888899998887762 2246777899999988853 44333
No 219
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.23 E-value=1.3e+02 Score=17.98 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=35.7
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcCC------eeEEEeCCHHHHHHHHH
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLGV------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~------~~~v~v~~p~~i~~il~ 106 (239)
--++||+..-. ....+.++..+||+|..+.+.. .-+|-..+++.++.++.
T Consensus 24 ~l~V~nLp~~~----t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 24 RIYVGNLPPDI----RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHH
Confidence 34677775432 3466788889999997776522 34788899999998884
No 220
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.11 E-value=1.5e+02 Score=18.62 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=35.0
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
++||+..-. ....+.++..+||+|..+.+. +.-+|-..+++.++..+..
T Consensus 67 ~v~nlp~~~----~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAEEV----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCTTC----CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCC----CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 566665422 246678888999999888762 2347888999999998853
No 221
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=22.89 E-value=1.3e+02 Score=18.09 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=36.3
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 17 HVFVGDLSPEI----TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45677776432 245678888999998887652 1346788899999999863
No 222
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.45 E-value=1.3e+02 Score=17.88 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=37.4
Q ss_pred ccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC--------CeeEEEeCCHHHHHHHHHhCCcccCCCC
Q 048689 53 WPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG--------VKQALVVSNWEIAKECFTTNDKAFAGRP 116 (239)
Q Consensus 53 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~~~~~~~~~~ 116 (239)
.-+++|+..-. ....+.++..+||.+ .+.+. +.-+|-..+++.++..+..+...+..|.
T Consensus 17 ~l~V~nLp~~~----te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 17 CVHMRGLPYRA----TENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp EEEEESCCTTC----CHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 34677776533 245567777788954 65542 1246778899999999865444444444
No 223
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.30 E-value=1.3e+02 Score=17.69 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=36.6
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEEcC-------CeeEEEeCCHHHHHHHHH
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMKLG-------VKQALVVSNWEIAKECFT 106 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~ 106 (239)
.--++|++..-. ....+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 16 RTLYVGNLSRDV----TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCccC----CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 345678776432 245677888999999887653 235788889999998886
No 224
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=21.93 E-value=1.5e+02 Score=20.95 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=34.0
Q ss_pred ceeeccccCCCCchHHHHHHHHHHhC--CeeEEEcCC---------eeEEEeCCHHHHHHHHH
Q 048689 55 LIGHLHILRGSEPAHRVLGNMADKYG--PIFTMKLGV---------KQALVVSNWEIAKECFT 106 (239)
Q Consensus 55 ~lG~~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~---------~~~v~v~~p~~i~~il~ 106 (239)
++||+..-. ....+.++..+|| .|..+.+.. .-+|.+.+.+.++.++.
T Consensus 72 fVgnL~~~~----te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 72 YIGNLTWWT----TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEeCCCCCC----CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 566665432 2456778889999 888876521 24788889999999885
No 225
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=21.56 E-value=1.3e+02 Score=17.39 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhC-CeeEEEcC---------CeeEEEeCCHHHHHHHHHh
Q 048689 69 HRVLGNMADKYG-PIFTMKLG---------VKQALVVSNWEIAKECFTT 107 (239)
Q Consensus 69 ~~~~~~~~~~yG-~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 107 (239)
...+.++..+|| +|..+++. |.-+|-..+++.++..+..
T Consensus 15 e~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 15 EDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp HHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 466778888999 67666542 2247888999999998853
No 226
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=21.55 E-value=1.3e+02 Score=22.29 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCeeEEEcCCeeEEEeCC---HHHHHHHHH
Q 048689 70 RVLGNMADKYGPIFTMKLGVKQALVVSN---WEIAKECFT 106 (239)
Q Consensus 70 ~~~~~~~~~yG~i~~~~~~~~~~v~v~~---p~~i~~il~ 106 (239)
..+.+..+++|... +++|+.++++++. +..+.+++.
T Consensus 164 ~~Ll~y~~~igG~l-f~iGgdny~iftt~~~rg~ie~~i~ 202 (268)
T 2qv6_A 164 LALMEELLKYNALL-FFIGGDNFMAPSNGMSEEDFLDIFN 202 (268)
T ss_dssp HHHHHHHHTTTCCC-EEEETTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEECCCEEEEEeCCCChhHHHHHHH
Confidence 33445666777644 5678889999999 999998764
No 227
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=21.47 E-value=2.1e+02 Score=22.40 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCc
Q 048689 193 MIHWLEGTVLDIILRIIAGKRYTSQS 218 (239)
Q Consensus 193 ~~~~~~~~~~dii~~~~fG~~~~~~~ 218 (239)
....+..++.++++.++||..++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~~ 175 (475)
T 3b98_A 150 KKDGLFNLCYSLLFKTGYLTVFGAEN 175 (475)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCCTT
T ss_pred eeehHHHHHHHHHHHHhhhheeCCcc
Confidence 34568999999999999999998743
No 228
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=21.30 E-value=1.5e+02 Score=24.48 Aligned_cols=63 Identities=8% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccccchHHHHHHHHHHHHHHHHhccc-ccCCchhHHHHHHHHHH
Q 048689 165 ESEVKASIQRLYKNCISSSSSRKVVSVEMIHWLEGTVLDIILRIIAGKR-YTSQSQEVNDWQQQITK 230 (239)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~dii~~~~fG~~-~~~~~~~~~~~~~~~~~ 230 (239)
+..+.+|++.+... +..+++|..--+.-.+......+++++..|+. +...+++..++.+..++
T Consensus 337 d~ti~eFl~~laS~---~PaPGGGSaAAl~gAlgaAL~sMVanLTiGKkkY~~~e~~m~~i~~~~~~ 400 (541)
T 1tt9_A 337 DASLRAFVREVGAR---SAAPGGGSVAAAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHA 400 (541)
T ss_pred hccHHHHHHHhcCC---CCCCCchHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Confidence 44466677776321 33445455556677777777888899999986 33333334444443333
No 229
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.87 E-value=1.3e+02 Score=17.29 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=39.5
Q ss_pred cccceeeccccCCCCchHHHHHHHHHHhCCeeEEE-cCC-----eeEEEeCCHHHHHHHHH-hCCcccCCC
Q 048689 52 AWPLIGHLHILRGSEPAHRVLGNMADKYGPIFTMK-LGV-----KQALVVSNWEIAKECFT-TNDKAFAGR 115 (239)
Q Consensus 52 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~-~~~-----~~~v~v~~p~~i~~il~-~~~~~~~~~ 115 (239)
.--++||+..-. ....+.++..+||+|..+. +.. .-+|-..+++.++..+. -++..+..+
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 16 RKLQIRNIPPHL----QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CCEEEEEECSSS----CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CEEEEEcCCCCC----CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345788876533 2455778888999998873 321 25778889999988875 244444433
No 230
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=20.73 E-value=25 Score=18.15 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=7.7
Q ss_pred cccceeeccc
Q 048689 52 AWPLIGHLHI 61 (239)
Q Consensus 52 ~~p~lG~~~~ 61 (239)
.+|++||+..
T Consensus 30 ~ipilgn~fs 39 (57)
T 1b35_D 30 HIPVLGNIFS 39 (57)
T ss_dssp CCCCSCCSSS
T ss_pred cccccccccc
Confidence 4799999864
No 231
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=20.32 E-value=1.4e+02 Score=17.50 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=39.5
Q ss_pred cceeeccccCCC--CchHHHHHHHHHHhCCeeEEEcC---------CeeEEEeCCHHHHHHHHHh-CCcccC
Q 048689 54 PLIGHLHILRGS--EPAHRVLGNMADKYGPIFTMKLG---------VKQALVVSNWEIAKECFTT-NDKAFA 113 (239)
Q Consensus 54 p~lG~~~~~~~~--~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~ 113 (239)
-++||++..... .-....+.++..+||+|..+.+. |.-+|...+++.++..+.. ++..+.
T Consensus 9 vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp EEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 456777653210 12345677888899999888763 3357888999999988853 444444
No 232
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.25 E-value=1.3e+02 Score=18.39 Aligned_cols=53 Identities=6% Similarity=-0.060 Sum_probs=34.7
Q ss_pred cceeeccccCCCCchHHHHHHHHHHhCC---eeEEEcC--------CeeEEEeCCHHHHHHHHHhCCc
Q 048689 54 PLIGHLHILRGSEPAHRVLGNMADKYGP---IFTMKLG--------VKQALVVSNWEIAKECFTTNDK 110 (239)
Q Consensus 54 p~lG~~~~~~~~~~~~~~~~~~~~~yG~---i~~~~~~--------~~~~v~v~~p~~i~~il~~~~~ 110 (239)
-++||+..-. ....+.++..+||. |..+.+. +.-+|-+.+++.++..+..+..
T Consensus 20 l~V~nLp~~~----te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~ 83 (118)
T 2db1_A 20 VKLRGLPWSC----SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRE 83 (118)
T ss_dssp EEEESCCTTC----CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTE
T ss_pred EEEeCCCCCC----CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCC
Confidence 4577776533 23557777788887 5544431 2357888999999999864333
No 233
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=20.08 E-value=1.4e+02 Score=17.37 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCe---eEEEcCCeeEEEeC-----CHHHHHHHHH
Q 048689 70 RVLGNMADKYGPI---FTMKLGVKQALVVS-----NWEIAKECFT 106 (239)
Q Consensus 70 ~~~~~~~~~yG~i---~~~~~~~~~~v~v~-----~p~~i~~il~ 106 (239)
....+++++|.++ ++++.++.+-+.|. |.+.+.++|.
T Consensus 24 EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g~~k~dKe~i~eiLq 68 (81)
T 1ghh_A 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQRISEILQ 68 (81)
T ss_dssp HHHHHHHHHCSSSCCEEEEEEESSCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCceEEEeecCCCceeecCCChhHHHHHHHHHH
Confidence 4456788889874 88988777777763 3455666654
Done!