Query 048693
Match_columns 539
No_of_seqs 471 out of 2382
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3.9E-56 8.4E-61 428.3 25.5 284 1-290 162-445 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 4.8E-48 1E-52 419.7 33.2 266 2-274 151-420 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 1.4E-47 3E-52 419.6 33.9 273 2-274 131-404 (653)
4 PRK13410 molecular chaperone D 100.0 7.4E-47 1.6E-51 412.3 33.8 266 2-274 126-395 (668)
5 PRK13411 molecular chaperone D 100.0 5E-47 1.1E-51 414.7 32.2 268 2-274 124-395 (653)
6 PTZ00400 DnaK-type molecular c 100.0 2E-46 4.4E-51 410.1 31.7 267 1-274 164-434 (663)
7 PLN03184 chloroplast Hsp70; Pr 100.0 3.5E-46 7.5E-51 408.4 33.1 266 2-274 163-432 (673)
8 PRK00290 dnaK molecular chaper 100.0 9.3E-46 2E-50 405.1 33.9 266 2-274 124-393 (627)
9 TIGR02350 prok_dnaK chaperone 100.0 1.4E-45 3E-50 402.4 32.3 267 2-274 121-391 (595)
10 TIGR01991 HscA Fe-S protein as 100.0 3.9E-45 8.3E-50 396.6 33.3 262 2-274 120-381 (599)
11 CHL00094 dnaK heat shock prote 100.0 4E-45 8.7E-50 398.9 33.4 266 2-274 126-395 (621)
12 COG0443 DnaK Molecular chapero 100.0 1E-45 2.2E-50 396.2 27.9 267 1-274 110-376 (579)
13 KOG0101 Molecular chaperones H 100.0 1.2E-45 2.6E-50 383.6 26.4 274 1-274 133-406 (620)
14 PRK05183 hscA chaperone protei 100.0 4.6E-44 9.9E-49 389.0 33.6 258 2-274 140-397 (616)
15 KOG0102 Molecular chaperones m 100.0 1.2E-45 2.6E-50 368.5 18.4 267 1-274 150-420 (640)
16 PF00012 HSP70: Hsp70 protein; 100.0 4.8E-44 1E-48 393.5 27.0 269 2-274 126-397 (602)
17 PRK01433 hscA chaperone protei 100.0 1.3E-42 2.9E-47 374.2 28.7 245 1-274 131-375 (595)
18 KOG0104 Molecular chaperones G 100.0 1.3E-42 2.8E-47 357.5 24.3 270 2-273 149-433 (902)
19 KOG0103 Molecular chaperones H 100.0 5.3E-42 1.1E-46 352.4 22.0 270 2-274 128-402 (727)
20 PRK11678 putative chaperone; P 100.0 7.2E-38 1.6E-42 326.4 29.6 242 2-252 140-448 (450)
21 PRK13928 rod shape-determining 100.0 4.9E-31 1.1E-35 268.6 25.5 223 10-253 94-325 (336)
22 PRK13929 rod-share determining 100.0 1.6E-29 3.4E-34 256.9 24.8 227 3-250 88-325 (335)
23 PRK13927 rod shape-determining 100.0 8.6E-29 1.9E-33 252.4 24.0 220 12-252 97-325 (334)
24 TIGR00904 mreB cell shape dete 100.0 1.2E-27 2.7E-32 243.4 23.9 220 12-252 99-328 (333)
25 TIGR02529 EutJ ethanolamine ut 100.0 2.7E-28 5.8E-33 235.1 17.6 187 2-247 52-238 (239)
26 PRK13930 rod shape-determining 100.0 1.8E-27 3.9E-32 242.9 23.1 225 8-253 97-330 (335)
27 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 2.2E-26 4.8E-31 228.7 16.0 219 10-249 92-319 (326)
28 PRK15080 ethanolamine utilizat 99.9 9.4E-26 2E-30 221.2 20.0 189 2-249 79-267 (267)
29 COG1077 MreB Actin-like ATPase 99.9 2.6E-23 5.6E-28 198.7 18.3 223 10-253 100-333 (342)
30 TIGR01174 ftsA cell division p 99.9 6.1E-21 1.3E-25 197.2 16.3 195 24-248 157-371 (371)
31 PRK09472 ftsA cell division pr 99.8 7E-20 1.5E-24 191.6 18.0 205 14-251 159-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 1.2E-17 2.5E-22 170.5 15.2 209 11-252 155-381 (418)
33 COG4820 EutJ Ethanolamine util 99.5 9.4E-16 2E-20 136.3 1.3 188 1-247 83-270 (277)
34 PRK13917 plasmid segregation p 99.4 4.1E-12 8.8E-17 129.3 16.8 210 10-254 109-339 (344)
35 TIGR03739 PRTRC_D PRTRC system 99.4 7.6E-12 1.6E-16 126.6 16.3 207 10-249 101-318 (320)
36 cd00012 ACTIN Actin; An ubiqui 99.4 6.7E-12 1.4E-16 130.0 14.5 217 11-252 95-348 (371)
37 smart00268 ACTIN Actin. ACTIN 99.3 5E-12 1.1E-16 131.1 11.3 217 12-251 96-347 (373)
38 TIGR01175 pilM type IV pilus a 99.3 3.3E-11 7.1E-16 123.8 17.1 180 23-249 141-347 (348)
39 PF11104 PilM_2: Type IV pilus 99.3 3.1E-11 6.8E-16 123.3 11.7 180 24-249 135-339 (340)
40 PF00022 Actin: Actin; InterP 99.1 6.8E-10 1.5E-14 116.0 12.1 226 11-252 94-368 (393)
41 PTZ00280 Actin-related protein 99.1 2.1E-09 4.6E-14 112.8 15.4 203 12-227 103-337 (414)
42 PF06406 StbA: StbA protein; 99.0 6.6E-10 1.4E-14 112.2 9.1 175 39-246 140-316 (318)
43 PTZ00281 actin; Provisional 98.9 8.7E-09 1.9E-13 106.7 11.8 215 11-250 101-349 (376)
44 PTZ00004 actin-2; Provisional 98.9 1.5E-08 3.3E-13 105.0 12.9 215 11-250 101-351 (378)
45 COG4972 PilM Tfp pilus assembl 98.9 5.4E-08 1.2E-12 94.3 15.4 156 26-226 150-311 (354)
46 TIGR00241 CoA_E_activ CoA-subs 98.8 3.9E-08 8.4E-13 95.9 13.3 194 18-247 29-247 (248)
47 PTZ00452 actin; Provisional 98.8 1E-07 2.2E-12 98.6 15.0 215 11-250 100-348 (375)
48 PTZ00466 actin-like protein; P 98.8 9.2E-08 2E-12 99.0 13.3 217 11-250 106-353 (380)
49 PF08841 DDR: Diol dehydratase 98.6 1.6E-06 3.5E-11 82.1 15.3 193 32-249 103-329 (332)
50 KOG0679 Actin-related protein 98.6 6.4E-07 1.4E-11 88.2 12.4 95 12-116 107-202 (426)
51 PF07520 SrfB: Virulence facto 98.6 3E-06 6.6E-11 93.9 19.0 84 164-253 730-836 (1002)
52 PF07649 C1_3: C1-like domain; 98.6 1.4E-08 3E-13 63.9 0.5 29 312-340 1-30 (30)
53 PF07649 C1_3: C1-like domain; 98.5 3.6E-08 7.7E-13 62.0 0.3 29 377-405 1-30 (30)
54 TIGR03192 benz_CoA_bzdQ benzoy 98.4 6.3E-06 1.4E-10 80.6 14.7 206 17-251 59-288 (293)
55 PF03107 C1_2: C1 domain; Int 98.3 3E-07 6.6E-12 57.6 2.4 29 377-405 1-30 (30)
56 COG5277 Actin and related prot 98.3 5.3E-06 1.1E-10 86.7 13.0 97 12-116 107-204 (444)
57 TIGR03286 methan_mark_15 putat 98.3 1.9E-05 4.2E-10 80.3 15.2 205 19-250 173-402 (404)
58 COG1924 Activator of 2-hydroxy 98.3 1.6E-05 3.5E-10 78.9 14.1 200 23-252 169-391 (396)
59 PF03107 C1_2: C1 domain; Int 98.2 7.9E-07 1.7E-11 55.7 2.5 29 312-340 1-30 (30)
60 TIGR02261 benz_CoA_red_D benzo 98.2 1.5E-05 3.3E-10 76.8 12.1 201 21-249 37-262 (262)
61 cd02340 ZZ_NBR1_like Zinc fing 98.2 1.1E-06 2.4E-11 59.9 3.0 30 313-342 2-32 (43)
62 TIGR02259 benz_CoA_red_A benzo 98.1 1.5E-05 3.3E-10 80.1 10.9 179 43-249 249-432 (432)
63 PRK10719 eutA reactivating fac 97.9 2E-05 4.3E-10 81.3 7.3 86 10-108 87-184 (475)
64 PRK13317 pantothenate kinase; 97.9 0.00031 6.7E-09 69.2 14.2 49 202-250 222-273 (277)
65 cd02339 ZZ_Mind_bomb Zinc fing 97.8 1.3E-05 2.8E-10 55.1 2.7 30 313-342 2-33 (45)
66 COG4457 SrfB Uncharacterized p 97.7 0.0041 8.9E-08 65.8 19.2 83 165-253 743-848 (1014)
67 cd02249 ZZ Zinc finger, ZZ typ 97.6 4.6E-05 9.9E-10 53.1 3.0 31 312-342 1-32 (46)
68 cd02344 ZZ_HERC2 Zinc finger, 97.6 5.3E-05 1.2E-09 51.9 2.6 30 313-342 2-33 (45)
69 KOG4236 Serine/threonine prote 97.5 4.9E-06 1.1E-10 85.3 -4.2 42 301-342 146-190 (888)
70 cd02342 ZZ_UBA_plant Zinc fing 97.5 4.3E-05 9.4E-10 50.9 1.5 30 313-342 2-33 (43)
71 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.5 6.5E-05 1.4E-09 52.4 2.5 31 312-342 1-35 (48)
72 cd02340 ZZ_NBR1_like Zinc fing 97.5 8.4E-05 1.8E-09 50.7 2.6 37 378-417 2-39 (43)
73 cd02338 ZZ_PCMF_like Zinc fing 97.4 0.00015 3.2E-09 51.2 2.9 30 313-342 2-33 (49)
74 cd02334 ZZ_dystrophin Zinc fin 97.3 0.00015 3.2E-09 50.9 2.6 30 313-342 2-33 (49)
75 KOG0696 Serine/threonine prote 97.3 5.2E-05 1.1E-09 75.8 0.2 96 300-406 45-154 (683)
76 KOG0676 Actin and related prot 97.3 0.00067 1.5E-08 68.7 7.8 92 12-115 100-192 (372)
77 KOG0677 Actin-related protein 97.3 0.003 6.4E-08 59.5 10.8 225 11-255 101-365 (389)
78 cd02335 ZZ_ADA2 Zinc finger, Z 97.2 0.00039 8.4E-09 49.1 3.7 46 312-360 1-48 (49)
79 PF02782 FGGY_C: FGGY family o 97.2 0.00072 1.6E-08 63.3 6.0 75 175-251 121-196 (198)
80 KOG0797 Actin-related protein 97.1 0.0019 4E-08 66.4 8.4 93 13-115 229-322 (618)
81 cd02343 ZZ_EF Zinc finger, ZZ 97.1 0.00041 8.8E-09 48.0 2.5 30 313-342 2-32 (48)
82 cd02345 ZZ_dah Zinc finger, ZZ 97.1 0.00041 9E-09 48.9 2.4 30 313-342 2-33 (49)
83 PF00130 C1_1: Phorbol esters/ 97.0 0.00056 1.2E-08 49.3 2.6 42 301-342 1-45 (53)
84 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.9 0.00062 1.3E-08 47.5 2.4 33 377-409 1-37 (48)
85 PF00569 ZZ: Zinc finger, ZZ t 96.9 0.00033 7.2E-09 48.7 0.6 32 311-342 4-37 (46)
86 KOG0680 Actin-related protein 96.8 0.049 1.1E-06 53.2 15.2 101 11-114 93-198 (400)
87 cd02337 ZZ_CBP Zinc finger, ZZ 96.8 0.00074 1.6E-08 45.5 2.0 30 312-342 1-31 (41)
88 TIGR00555 panK_eukar pantothen 96.8 0.051 1.1E-06 53.4 15.5 206 13-247 23-278 (279)
89 smart00291 ZnF_ZZ Zinc-binding 96.8 0.00078 1.7E-08 46.4 2.0 32 311-342 4-36 (44)
90 cd02339 ZZ_Mind_bomb Zinc fing 96.7 0.0013 2.7E-08 45.3 2.5 30 378-407 2-33 (45)
91 PRK15027 xylulokinase; Provisi 96.7 0.0049 1.1E-07 66.3 8.1 80 169-255 356-438 (484)
92 COG1069 AraB Ribulose kinase [ 96.6 0.035 7.6E-07 58.3 13.1 219 29-255 233-482 (544)
93 TIGR01315 5C_CHO_kinase FGGY-f 96.6 0.0067 1.4E-07 66.1 8.4 85 169-255 410-494 (541)
94 cd02249 ZZ Zinc finger, ZZ typ 96.5 0.0024 5.2E-08 44.4 2.8 33 377-409 1-34 (46)
95 PLN02669 xylulokinase 96.4 0.011 2.3E-07 64.7 8.8 71 178-251 422-492 (556)
96 PF14450 FtsA: Cell division p 96.4 0.0038 8.3E-08 53.4 4.3 50 67-116 1-55 (120)
97 KOG4582 Uncharacterized conser 96.3 0.0032 6.9E-08 61.9 3.3 32 311-342 152-185 (278)
98 PRK04123 ribulokinase; Provisi 96.2 0.012 2.6E-07 64.4 7.8 51 202-254 438-489 (548)
99 PRK00047 glpK glycerol kinase; 96.2 0.014 2.9E-07 63.1 8.0 52 202-255 403-454 (498)
100 TIGR01312 XylB D-xylulose kina 96.2 0.016 3.4E-07 62.3 8.2 52 202-255 390-441 (481)
101 PTZ00294 glycerol kinase-like 96.1 0.015 3.2E-07 63.0 7.9 52 202-255 406-457 (504)
102 TIGR01311 glycerol_kin glycero 96.1 0.014 3.1E-07 62.9 7.5 52 202-255 399-450 (493)
103 TIGR02628 fuculo_kin_coli L-fu 96.0 0.018 3.9E-07 61.6 7.6 52 202-255 393-444 (465)
104 TIGR01234 L-ribulokinase L-rib 96.0 0.02 4.4E-07 62.4 8.1 52 202-255 435-487 (536)
105 PRK10331 L-fuculokinase; Provi 96.0 0.019 4.1E-07 61.5 7.7 81 169-254 358-439 (470)
106 PF00130 C1_1: Phorbol esters/ 96.0 0.006 1.3E-07 43.8 2.6 31 377-407 12-45 (53)
107 PF01869 BcrAD_BadFG: BadF/Bad 95.9 0.3 6.5E-06 48.1 15.6 72 175-249 196-271 (271)
108 PLN02295 glycerol kinase 95.9 0.033 7.2E-07 60.3 9.3 52 202-255 412-463 (512)
109 smart00291 ZnF_ZZ Zinc-binding 95.9 0.0049 1.1E-07 42.4 1.8 32 376-407 4-36 (44)
110 TIGR01314 gntK_FGGY gluconate 95.8 0.023 5E-07 61.4 7.7 52 202-255 401-452 (505)
111 cd02335 ZZ_ADA2 Zinc finger, Z 95.8 0.011 2.3E-07 41.7 3.2 42 378-419 2-47 (49)
112 cd00029 C1 Protein kinase C co 95.7 0.0057 1.2E-07 43.2 1.8 40 303-342 3-45 (50)
113 cd02342 ZZ_UBA_plant Zinc fing 95.7 0.0055 1.2E-07 41.1 1.3 30 378-407 2-33 (43)
114 KOG2517 Ribulose kinase and re 95.6 0.036 7.9E-07 58.4 7.9 80 174-255 385-465 (516)
115 TIGR02627 rhamnulo_kin rhamnul 95.6 0.031 6.6E-07 59.6 7.5 50 202-254 387-436 (454)
116 cd02337 ZZ_CBP Zinc finger, ZZ 95.6 0.0055 1.2E-07 41.3 1.0 37 377-420 1-38 (41)
117 PRK10939 autoinducer-2 (AI-2) 95.5 0.035 7.6E-07 60.3 7.6 52 202-255 409-460 (520)
118 PF01968 Hydantoinase_A: Hydan 95.5 0.027 5.8E-07 56.2 6.1 66 179-247 218-283 (290)
119 smart00109 C1 Protein kinase C 95.4 0.0073 1.6E-07 42.3 1.4 37 306-342 6-44 (49)
120 PRK10640 rhaB rhamnulokinase; 95.2 0.047 1E-06 58.5 7.4 51 202-255 375-425 (471)
121 KOG1280 Uncharacterized conser 95.2 0.014 3.1E-07 57.1 2.9 49 310-361 7-57 (381)
122 KOG2531 Sugar (pentulose and h 95.1 0.093 2E-06 53.8 8.3 56 195-252 435-490 (545)
123 PF06277 EutA: Ethanolamine ut 94.9 0.036 7.7E-07 57.7 5.1 87 14-105 88-178 (473)
124 cd02344 ZZ_HERC2 Zinc finger, 94.9 0.024 5.1E-07 39.0 2.6 30 378-407 2-33 (45)
125 PF00569 ZZ: Zinc finger, ZZ t 94.8 0.0084 1.8E-07 41.7 0.1 31 376-406 4-36 (46)
126 PF07318 DUF1464: Protein of u 94.8 0.22 4.8E-06 49.9 10.1 73 178-255 240-319 (343)
127 COG0533 QRI7 Metal-dependent p 94.7 1.9 4.1E-05 43.3 16.3 41 181-226 245-285 (342)
128 PRK09604 UGMP family protein; 94.5 6.2 0.00013 40.2 20.2 53 202-254 254-311 (332)
129 cd02345 ZZ_dah Zinc finger, ZZ 94.3 0.023 5E-07 40.0 1.5 31 378-408 2-34 (49)
130 COG1070 XylB Sugar (pentulose 94.3 0.21 4.5E-06 54.0 9.5 81 169-253 370-450 (502)
131 cd02343 ZZ_EF Zinc finger, ZZ 94.3 0.024 5.2E-07 39.3 1.5 31 378-408 2-33 (48)
132 cd02338 ZZ_PCMF_like Zinc fing 94.3 0.03 6.6E-07 39.4 2.0 32 378-409 2-35 (49)
133 cd02334 ZZ_dystrophin Zinc fin 94.2 0.025 5.4E-07 39.7 1.4 30 378-407 2-33 (49)
134 KOG0681 Actin-related protein 94.1 0.05 1.1E-06 56.7 4.0 69 184-252 538-615 (645)
135 cd00029 C1 Protein kinase C co 93.9 0.042 9.1E-07 38.7 2.1 30 377-406 12-44 (50)
136 PRK11031 guanosine pentaphosph 93.7 0.14 3.1E-06 55.0 6.7 79 26-109 93-171 (496)
137 smart00109 C1 Protein kinase C 93.4 0.038 8.2E-07 38.6 1.2 31 377-407 12-44 (49)
138 PF02541 Ppx-GppA: Ppx/GppA ph 93.2 0.13 2.8E-06 51.2 5.1 76 29-109 76-151 (285)
139 KOG1169 Diacylglycerol kinase 93.0 0.039 8.4E-07 59.2 1.0 91 377-469 45-150 (634)
140 COG3426 Butyrate kinase [Energ 92.9 0.54 1.2E-05 45.4 8.3 48 200-247 294-344 (358)
141 KOG0957 PHD finger protein [Ge 92.9 0.066 1.4E-06 54.9 2.4 133 313-465 121-274 (707)
142 PRK09585 anmK anhydro-N-acetyl 92.7 0.94 2E-05 46.4 10.5 73 176-252 263-339 (365)
143 TIGR03281 methan_mark_12 putat 92.6 2.6 5.6E-05 41.5 12.7 59 203-268 263-324 (326)
144 COG0554 GlpK Glycerol kinase [ 92.5 0.38 8.2E-06 50.0 7.4 78 175-254 374-452 (499)
145 PLN02920 pantothenate kinase 1 92.3 3.5 7.6E-05 42.3 13.8 49 201-249 296-350 (398)
146 PF02543 CmcH_NodU: Carbamoylt 92.3 3.6 7.7E-05 42.3 14.2 82 168-254 132-216 (360)
147 TIGR00329 gcp_kae1 metallohydr 92.2 3.1 6.7E-05 41.8 13.5 93 10-108 69-166 (305)
148 KOG0696 Serine/threonine prote 91.9 0.046 1E-06 55.3 -0.1 86 377-468 57-158 (683)
149 PRK10854 exopolyphosphatase; P 91.6 0.31 6.8E-06 52.7 5.9 59 27-85 99-157 (513)
150 PRK14878 UGMP family protein; 91.5 7.5 0.00016 39.3 15.5 33 202-234 241-275 (323)
151 cd02336 ZZ_RSC8 Zinc finger, Z 91.4 0.12 2.7E-06 35.5 1.6 29 377-405 1-30 (45)
152 KOG1280 Uncharacterized conser 90.8 0.15 3.2E-06 50.3 2.2 34 375-408 7-42 (381)
153 PF03702 UPF0075: Uncharacteri 90.8 0.76 1.6E-05 47.1 7.4 77 174-253 259-339 (364)
154 PF14574 DUF4445: Domain of un 90.5 1.7 3.8E-05 45.2 9.9 87 162-249 288-375 (412)
155 TIGR00744 ROK_glcA_fam ROK fam 90.5 8.7 0.00019 38.6 15.0 72 10-83 57-141 (318)
156 PF08735 DUF1786: Putative pyr 90.4 1.8 3.8E-05 41.7 9.0 96 8-108 111-208 (254)
157 PRK09605 bifunctional UGMP fam 90.4 28 0.00062 37.9 19.8 53 202-254 245-302 (535)
158 PTZ00340 O-sialoglycoprotein e 90.3 20 0.00043 36.5 16.9 52 182-239 248-301 (345)
159 KOG0694 Serine/threonine prote 90.1 0.065 1.4E-06 57.7 -0.9 111 300-412 158-281 (694)
160 TIGR03706 exo_poly_only exopol 88.9 0.63 1.4E-05 46.6 5.1 74 28-108 89-163 (300)
161 PLN02666 5-oxoprolinase 88.8 15 0.00032 44.1 16.9 77 168-248 453-531 (1275)
162 COG0248 GppA Exopolyphosphatas 88.6 2 4.4E-05 45.9 8.9 59 26-84 90-148 (492)
163 PF03630 Fumble: Fumble ; Int 88.3 9.9 0.00022 38.7 13.2 49 201-249 286-340 (341)
164 PF13832 zf-HC5HC2H_2: PHD-zin 88.1 0.42 9.2E-06 40.0 2.8 83 313-407 2-87 (110)
165 KOG4582 Uncharacterized conser 87.9 0.22 4.9E-06 49.0 1.1 31 377-407 153-185 (278)
166 TIGR03723 bact_gcp putative gl 87.6 32 0.00069 34.7 16.4 45 202-246 259-308 (314)
167 PRK00976 hypothetical protein; 86.4 5.7 0.00012 39.9 9.9 60 202-268 263-324 (326)
168 KOG4286 Dystrophin-like protei 86.3 0.4 8.6E-06 51.9 1.9 44 311-355 603-648 (966)
169 KOG0956 PHD finger protein AF1 85.5 0.46 1E-05 50.9 1.9 125 314-467 8-158 (900)
170 KOG0956 PHD finger protein AF1 85.0 0.53 1.1E-05 50.5 2.0 94 306-407 43-156 (900)
171 PRK03011 butyrate kinase; Prov 84.5 4.5 9.7E-05 41.5 8.6 46 202-247 295-343 (358)
172 KOG2807 RNA polymerase II tran 84.0 0.72 1.6E-05 45.2 2.3 94 309-407 261-362 (378)
173 TIGR00143 hypF [NiFe] hydrogen 84.0 2.8 6E-05 47.1 7.3 49 202-250 658-711 (711)
174 KOG2708 Predicted metalloprote 83.6 40 0.00087 31.9 14.6 63 179-247 236-300 (336)
175 COG4819 EutA Ethanolamine util 83.4 0.76 1.6E-05 45.4 2.2 37 64-105 144-180 (473)
176 TIGR03722 arch_KAE1 universal 83.1 55 0.0012 33.1 16.5 43 202-244 242-289 (322)
177 KOG0954 PHD finger protein [Ge 82.0 1.2 2.5E-05 48.4 3.2 35 308-342 268-305 (893)
178 COG0145 HyuA N-methylhydantoin 81.7 2.1 4.6E-05 47.5 5.2 42 42-84 256-297 (674)
179 COG2377 Predicted molecular ch 79.7 20 0.00043 36.4 10.7 53 201-253 289-345 (371)
180 PF13941 MutL: MutL protein 78.6 13 0.00027 39.4 9.4 47 67-113 2-49 (457)
181 TIGR00622 ssl1 transcription f 78.5 3.5 7.7E-05 34.3 4.2 31 377-407 56-98 (112)
182 KOG0955 PHD finger protein BR1 78.0 1.9 4E-05 49.8 3.3 37 306-342 214-253 (1051)
183 cd02336 ZZ_RSC8 Zinc finger, Z 77.9 1.4 3.1E-05 30.3 1.5 31 312-342 1-32 (45)
184 PF02685 Glucokinase: Glucokin 76.9 20 0.00044 36.1 10.1 81 36-117 89-181 (316)
185 PF00628 PHD: PHD-finger; Int 76.4 2.2 4.8E-05 29.9 2.3 33 378-410 1-34 (51)
186 KOG0457 Histone acetyltransfer 75.3 1.8 4E-05 44.3 2.1 51 310-363 13-65 (438)
187 PRK07058 acetate kinase; Provi 74.6 20 0.00044 37.0 9.4 47 177-227 297-344 (396)
188 KOG1169 Diacylglycerol kinase 73.5 2.2 4.8E-05 46.2 2.3 139 313-465 46-211 (634)
189 COG2441 Predicted butyrate kin 73.0 15 0.00034 35.6 7.5 55 201-255 272-336 (374)
190 PF07975 C1_4: TFIIH C1-like d 71.8 1 2.2E-05 31.8 -0.5 38 313-356 1-46 (51)
191 KOG2707 Predicted metalloprote 71.7 1.2E+02 0.0026 30.8 16.1 46 182-227 285-330 (405)
192 smart00249 PHD PHD zinc finger 71.2 4.1 8.9E-05 27.5 2.5 33 378-410 1-34 (47)
193 KOG4236 Serine/threonine prote 70.1 0.46 1E-05 49.9 -3.5 42 301-342 268-312 (888)
194 COG4012 Uncharacterized protei 69.2 34 0.00074 33.1 8.8 67 42-113 207-273 (342)
195 KOG0193 Serine/threonine prote 69.1 2.3 5E-05 45.6 1.3 45 298-342 176-220 (678)
196 PF07754 DUF1610: Domain of un 68.4 4.4 9.5E-05 23.8 1.8 20 379-398 1-24 (24)
197 PLN02902 pantothenate kinase 68.2 1E+02 0.0022 35.3 13.6 49 201-250 345-400 (876)
198 PRK13329 pantothenate kinase; 68.0 49 0.0011 32.1 10.1 70 171-250 176-245 (249)
199 PTZ00297 pantothenate kinase; 66.0 1.2E+02 0.0025 37.5 14.7 73 175-248 1365-1443(1452)
200 COG2192 Predicted carbamoyl tr 64.9 2.1E+02 0.0045 31.0 20.2 84 168-256 255-340 (555)
201 KOG0825 PHD Zn-finger protein 64.0 4 8.7E-05 44.8 1.8 33 309-341 213-247 (1134)
202 PRK05082 N-acetylmannosamine k 63.2 33 0.00072 33.9 8.3 48 202-249 233-286 (291)
203 KOG1512 PHD Zn-finger protein 62.7 3.2 6.9E-05 39.9 0.7 69 324-408 278-347 (381)
204 TIGR03123 one_C_unchar_1 proba 62.5 5.8 0.00012 39.9 2.6 22 64-85 127-148 (318)
205 KOG1701 Focal adhesion adaptor 62.5 4.8 0.0001 41.2 1.9 28 313-340 276-303 (468)
206 PF14446 Prok-RING_1: Prokaryo 62.4 6.3 0.00014 28.2 2.0 31 376-406 5-37 (54)
207 COG2971 Predicted N-acetylgluc 62.2 1.5E+02 0.0032 29.6 12.0 67 181-255 228-295 (301)
208 KOG2996 Rho guanine nucleotide 61.8 2.1 4.5E-05 45.3 -0.7 44 300-343 523-569 (865)
209 PF00628 PHD: PHD-finger; Int 61.7 8.4 0.00018 26.9 2.6 30 313-342 1-31 (51)
210 KOG0695 Serine/threonine prote 60.6 3 6.6E-05 41.4 0.2 43 300-342 130-175 (593)
211 cd06007 R3H_DEXH_helicase R3H 60.4 20 0.00044 26.2 4.5 36 4-41 9-44 (59)
212 PRK13310 N-acetyl-D-glucosamin 59.5 40 0.00087 33.6 8.1 48 202-249 245-300 (303)
213 TIGR00622 ssl1 transcription f 59.2 11 0.00024 31.4 3.2 30 311-340 55-96 (112)
214 PRK13322 pantothenate kinase; 58.6 78 0.0017 30.6 9.6 67 173-250 177-243 (246)
215 PRK13318 pantothenate kinase; 57.8 1.2E+02 0.0026 29.5 10.9 152 9-215 55-227 (258)
216 smart00249 PHD PHD zinc finger 57.5 11 0.00023 25.3 2.6 30 313-342 1-31 (47)
217 KOG4301 Beta-dystrobrevin [Cyt 56.3 4.7 0.0001 39.9 0.7 33 310-342 239-273 (434)
218 PRK13328 pantothenate kinase; 54.7 1.1E+02 0.0024 29.8 10.0 68 173-250 185-252 (255)
219 TIGR02707 butyr_kinase butyrat 54.4 41 0.00088 34.5 7.2 68 177-247 271-341 (351)
220 PF12773 DZR: Double zinc ribb 54.4 14 0.00031 25.6 2.8 21 377-397 30-50 (50)
221 KOG0957 PHD finger protein [Ge 54.3 5.8 0.00013 41.2 1.0 35 307-341 540-575 (707)
222 COG0837 Glk Glucokinase [Carbo 54.2 2.1E+02 0.0045 28.5 11.5 83 36-118 93-186 (320)
223 COG5114 Histone acetyltransfer 53.7 5.5 0.00012 39.0 0.7 50 311-363 5-56 (432)
224 PF13941 MutL: MutL protein 53.7 9.9 0.00022 40.2 2.6 57 25-82 198-265 (457)
225 PRK07157 acetate kinase; Provi 53.4 35 0.00076 35.4 6.5 47 178-227 299-346 (400)
226 PF10571 UPF0547: Uncharacteri 53.3 8.6 0.00019 23.0 1.2 23 378-400 2-24 (26)
227 COG5151 SSL1 RNA polymerase II 52.9 8.2 0.00018 37.7 1.7 30 377-406 363-404 (421)
228 PRK09557 fructokinase; Reviewe 52.9 25 0.00055 35.0 5.4 48 202-249 244-299 (301)
229 KOG0457 Histone acetyltransfer 52.2 11 0.00023 38.9 2.5 48 376-423 14-65 (438)
230 TIGR01319 glmL_fam conserved h 51.2 73 0.0016 33.7 8.4 49 70-120 1-50 (463)
231 PF13909 zf-H2C2_5: C2H2-type 50.8 7.6 0.00016 22.3 0.7 10 326-335 1-10 (24)
232 PF14446 Prok-RING_1: Prokaryo 50.7 12 0.00026 26.8 1.8 33 310-342 4-38 (54)
233 KOG2807 RNA polymerase II tran 50.6 7.3 0.00016 38.4 1.0 20 445-464 342-361 (378)
234 PTZ00303 phosphatidylinositol 50.3 16 0.00036 40.3 3.6 31 312-342 461-498 (1374)
235 COG1198 PriA Primosomal protei 49.4 15 0.00032 41.3 3.3 36 186-227 235-270 (730)
236 COG4012 Uncharacterized protei 49.4 38 0.00083 32.7 5.5 72 66-144 2-96 (342)
237 COG1521 Pantothenate kinase ty 48.9 84 0.0018 30.5 7.9 50 171-222 181-230 (251)
238 PF02148 zf-UBP: Zn-finger in 47.5 4.8 0.0001 29.9 -0.6 57 314-384 1-57 (63)
239 PRK09698 D-allose kinase; Prov 46.8 77 0.0017 31.4 7.8 49 202-250 236-295 (302)
240 PRK14890 putative Zn-ribbon RN 46.3 12 0.00027 27.1 1.4 13 387-399 45-57 (59)
241 PF10367 Vps39_2: Vacuolar sor 45.3 16 0.00035 29.9 2.2 30 377-406 79-108 (109)
242 PF07191 zinc-ribbons_6: zinc- 45.0 7.7 0.00017 29.4 0.2 27 313-339 3-33 (70)
243 PRK00180 acetate kinase A/prop 44.8 68 0.0015 33.4 7.1 48 177-227 301-349 (402)
244 COG2888 Predicted Zn-ribbon RN 44.7 12 0.00027 27.1 1.2 13 387-399 47-59 (61)
245 PRK11199 tyrA bifunctional cho 43.9 2.1E+02 0.0045 29.6 10.6 52 169-224 66-120 (374)
246 PRK13331 pantothenate kinase; 43.8 1.7E+02 0.0037 28.4 9.2 52 172-226 174-225 (251)
247 TIGR01384 TFS_arch transcripti 43.6 56 0.0012 26.8 5.2 25 313-337 2-28 (104)
248 smart00396 ZnF_UBR1 Putative z 43.4 29 0.00064 26.4 3.2 43 381-423 2-47 (71)
249 KOG0193 Serine/threonine prote 42.8 17 0.00036 39.4 2.3 30 377-406 190-219 (678)
250 KOG0681 Actin-related protein 42.6 1.2E+02 0.0025 32.7 8.2 99 12-116 117-216 (645)
251 TIGR01319 glmL_fam conserved h 42.6 20 0.00044 37.7 2.8 59 24-82 193-266 (463)
252 PF10367 Vps39_2: Vacuolar sor 42.5 21 0.00046 29.2 2.5 32 310-341 77-108 (109)
253 cd02640 R3H_NRF R3H domain of 41.9 52 0.0011 24.1 4.2 30 12-41 16-45 (60)
254 KOG3993 Transcription factor ( 41.6 3 6.5E-05 42.5 -3.2 26 309-334 265-304 (500)
255 KOG0797 Actin-related protein 41.5 12 0.00025 39.6 0.9 53 202-254 526-592 (618)
256 KOG2996 Rho guanine nucleotide 40.9 6.8 0.00015 41.6 -0.9 30 377-406 535-567 (865)
257 KOG4367 Predicted Zn-finger pr 40.9 12 0.00026 38.2 0.9 88 311-405 162-250 (699)
258 PF13832 zf-HC5HC2H_2: PHD-zin 40.6 17 0.00037 30.2 1.6 33 309-342 53-87 (110)
259 PF08746 zf-RING-like: RING-li 40.2 12 0.00026 25.4 0.5 28 314-342 1-30 (43)
260 PF14569 zf-UDP: Zinc-binding 40.0 10 0.00023 29.1 0.2 30 376-405 9-43 (80)
261 PF13831 PHD_2: PHD-finger; PD 39.8 12 0.00025 24.4 0.4 19 324-342 3-21 (36)
262 PF07282 OrfB_Zn_ribbon: Putat 39.0 27 0.00058 26.2 2.4 30 309-338 26-59 (69)
263 KOG1385 Nucleoside phosphatase 38.7 32 0.0007 35.5 3.5 20 64-83 212-231 (453)
264 KOG3623 Homeobox transcription 38.4 7.5 0.00016 42.5 -1.1 11 376-386 950-960 (1007)
265 TIGR00671 baf pantothenate kin 37.9 1.2E+02 0.0027 29.1 7.4 43 173-215 177-219 (243)
266 COG5026 Hexokinase [Carbohydra 37.5 1.3E+02 0.0029 31.4 7.6 32 62-93 72-104 (466)
267 PRK13320 pantothenate kinase; 37.5 1.5E+02 0.0033 28.6 7.9 14 64-77 113-126 (244)
268 KOG4301 Beta-dystrobrevin [Cyt 37.1 13 0.00028 37.0 0.4 30 377-406 241-272 (434)
269 KOG2872 Uroporphyrinogen decar 36.2 90 0.0019 30.7 5.8 69 168-240 219-287 (359)
270 TIGR00016 ackA acetate kinase. 34.9 1.3E+02 0.0027 31.5 7.1 47 178-227 306-353 (404)
271 PF13240 zinc_ribbon_2: zinc-r 34.7 24 0.00051 20.4 1.1 20 379-398 2-21 (23)
272 KOG2186 Cell growth-regulating 34.3 15 0.00033 35.0 0.4 10 377-386 4-13 (276)
273 cd02639 R3H_RRM R3H domain of 34.3 1.1E+02 0.0023 22.6 4.7 31 11-41 15-45 (60)
274 PRK04023 DNA polymerase II lar 34.1 42 0.00091 38.7 3.7 23 377-401 652-674 (1121)
275 PF00349 Hexokinase_1: Hexokin 33.2 55 0.0012 30.8 3.9 29 63-91 61-90 (206)
276 cd02641 R3H_Smubp-2_like R3H d 33.1 80 0.0017 23.1 4.0 31 12-42 16-46 (60)
277 COG5114 Histone acetyltransfer 33.0 26 0.00057 34.5 1.7 49 376-424 5-57 (432)
278 PF13842 Tnp_zf-ribbon_2: DDE_ 32.8 45 0.00097 21.0 2.2 26 378-403 2-29 (32)
279 COG4020 Uncharacterized protei 32.8 2.3E+02 0.005 27.4 7.8 52 199-253 265-319 (332)
280 PF00643 zf-B_box: B-box zinc 32.3 25 0.00054 23.3 1.1 35 377-417 4-38 (42)
281 PF14574 DUF4445: Domain of un 31.7 1.2E+02 0.0026 31.9 6.4 39 175-213 56-94 (412)
282 PF14803 Nudix_N_2: Nudix N-te 31.0 32 0.00069 22.1 1.3 9 390-398 22-30 (34)
283 KOG1819 FYVE finger-containing 30.8 35 0.00075 35.7 2.3 37 306-342 896-934 (990)
284 PF13824 zf-Mss51: Zinc-finger 30.8 32 0.0007 24.7 1.5 12 390-401 14-25 (55)
285 PF04438 zf-HIT: HIT zinc fing 30.7 24 0.00053 21.9 0.7 20 377-399 3-22 (30)
286 PF08392 FAE1_CUT1_RppA: FAE1/ 30.5 1.2E+02 0.0025 30.2 5.8 50 178-227 80-130 (290)
287 PF01150 GDA1_CD39: GDA1/CD39 30.1 62 0.0013 34.2 4.2 60 25-84 104-183 (434)
288 KOG1794 N-Acetylglucosamine ki 30.0 1.9E+02 0.0041 28.7 6.9 70 185-254 244-319 (336)
289 KOG4286 Dystrophin-like protei 29.8 23 0.0005 39.1 0.8 36 377-412 604-641 (966)
290 PF12647 RNHCP: RNHCP domain; 29.5 44 0.00096 26.8 2.2 29 310-338 3-37 (92)
291 KOG4443 Putative transcription 29.3 36 0.00078 37.1 2.2 32 311-342 68-100 (694)
292 COG0675 Transposase and inacti 29.2 47 0.001 33.4 3.1 26 377-403 310-335 (364)
293 PF09297 zf-NADH-PPase: NADH p 29.1 31 0.00066 21.6 1.0 22 377-398 4-29 (32)
294 PF00815 Histidinol_dh: Histid 29.0 1E+02 0.0022 32.2 5.3 73 11-83 137-227 (412)
295 smart00064 FYVE Protein presen 28.8 39 0.00084 25.2 1.8 34 376-409 10-45 (68)
296 PF00412 LIM: LIM domain; Int 28.5 41 0.00089 23.9 1.8 10 377-386 27-36 (58)
297 smart00661 RPOL9 RNA polymeras 28.5 45 0.00097 23.2 2.0 24 313-336 2-31 (52)
298 PLN02377 3-ketoacyl-CoA syntha 28.3 1.7E+02 0.0037 31.5 7.1 55 173-227 164-219 (502)
299 PRK00564 hypA hydrogenase nick 28.1 45 0.00098 28.2 2.2 35 353-397 58-95 (117)
300 cd06572 Histidinol_dh Histidin 27.8 1.4E+02 0.0031 30.9 6.1 73 11-83 123-213 (390)
301 COG1548 Predicted transcriptio 27.2 1E+02 0.0022 29.9 4.5 23 63-85 128-150 (330)
302 PRK15080 ethanolamine utilizat 26.5 1.7E+02 0.0036 28.7 6.3 45 63-107 22-66 (267)
303 PRK00877 hisD bifunctional his 25.9 74 0.0016 33.3 3.7 72 11-83 151-240 (425)
304 PF07227 DUF1423: Protein of u 25.9 70 0.0015 33.4 3.5 17 326-342 147-163 (446)
305 COG5141 PHD zinc finger-contai 25.6 33 0.00073 35.9 1.1 32 311-342 193-227 (669)
306 KOG1244 Predicted transcriptio 25.5 23 0.0005 34.1 -0.0 84 377-470 225-318 (336)
307 PF01363 FYVE: FYVE zinc finge 25.5 44 0.00096 24.9 1.5 33 309-341 7-41 (69)
308 TIGR03393 indolpyr_decarb indo 25.0 2E+02 0.0042 31.4 7.1 61 12-78 16-77 (539)
309 KOG4443 Putative transcription 24.8 47 0.001 36.2 2.1 75 313-406 20-99 (694)
310 TIGR00749 glk glucokinase, pro 24.4 3.7E+02 0.0081 26.8 8.6 21 35-55 87-107 (316)
311 PRK13321 pantothenate kinase; 24.4 2.8E+02 0.006 26.9 7.4 46 67-113 2-47 (256)
312 COG3894 Uncharacterized metal- 23.8 4.2E+02 0.009 28.5 8.5 44 66-109 165-209 (614)
313 KOG0612 Rho-associated, coiled 23.7 28 0.00061 40.6 0.2 48 293-340 1202-1251(1317)
314 PF04723 GRDA: Glycine reducta 23.6 1.6E+02 0.0035 25.5 4.6 39 17-55 44-85 (150)
315 COG4126 Hydantoin racemase [Am 23.6 3E+02 0.0066 26.1 6.8 43 203-248 175-217 (230)
316 COG1773 Rubredoxin [Energy pro 23.5 74 0.0016 22.9 2.2 14 325-338 3-16 (55)
317 PF13248 zf-ribbon_3: zinc-rib 23.4 47 0.001 19.7 1.1 22 377-398 3-24 (26)
318 COG0068 HypF Hydrogenase matur 23.3 3.1E+02 0.0067 30.7 7.8 50 201-250 692-746 (750)
319 PRK12408 glucokinase; Provisio 23.2 2.5E+02 0.0053 28.5 7.0 41 36-76 107-157 (336)
320 TIGR00067 glut_race glutamate 23.1 1.5E+02 0.0033 28.7 5.2 42 202-247 172-213 (251)
321 PRK00865 glutamate racemase; P 22.9 2.3E+02 0.005 27.6 6.4 56 187-248 164-219 (261)
322 COG0675 Transposase and inacti 22.9 56 0.0012 32.9 2.2 29 309-338 307-335 (364)
323 COG1940 NagC Transcriptional r 22.9 3.4E+02 0.0073 27.0 7.9 55 64-118 5-59 (314)
324 TIGR00100 hypA hydrogenase nic 22.8 71 0.0015 26.9 2.5 21 377-397 71-93 (115)
325 TIGR01053 LSD1 zinc finger dom 22.8 55 0.0012 20.5 1.3 22 313-334 3-28 (31)
326 PF01146 Caveolin: Caveolin; 22.7 50 0.0011 29.2 1.5 34 505-538 61-94 (148)
327 PF12401 DUF3662: Protein of u 22.3 3.3E+02 0.0071 22.9 6.4 86 106-200 5-93 (116)
328 KOG2697 Histidinol dehydrogena 22.2 1E+02 0.0022 30.4 3.6 72 12-83 158-251 (446)
329 COG0533 QRI7 Metal-dependent p 21.8 2.2E+02 0.0047 28.9 6.0 43 177-219 46-88 (342)
330 PRK12380 hydrogenase nickel in 21.8 78 0.0017 26.5 2.5 35 353-397 57-93 (113)
331 PTZ00340 O-sialoglycoprotein e 21.4 1.6E+02 0.0035 30.1 5.1 43 177-219 45-87 (345)
332 PHA00626 hypothetical protein 21.3 83 0.0018 22.7 2.1 15 324-338 22-36 (59)
333 PRK14878 UGMP family protein; 21.2 1.3E+02 0.0027 30.5 4.3 43 177-219 40-82 (323)
334 KOG0694 Serine/threonine prote 21.2 24 0.00051 38.8 -1.0 30 377-406 170-202 (694)
335 KOG1011 Neurotransmitter relea 21.0 22 0.00047 38.5 -1.3 40 301-340 173-215 (1283)
336 COG0141 HisD Histidinol dehydr 20.9 75 0.0016 33.1 2.6 72 11-83 147-236 (425)
337 TIGR03723 bact_gcp putative gl 20.7 1.5E+02 0.0032 29.8 4.7 45 177-221 45-89 (314)
338 PTZ00288 glucokinase 1; Provis 20.7 5.6E+02 0.012 26.8 9.0 19 37-55 128-146 (405)
339 TIGR03722 arch_KAE1 universal 20.4 1.6E+02 0.0035 29.7 4.9 43 177-219 41-83 (322)
340 cd01741 GATase1_1 Subgroup of 20.2 1.7E+02 0.0036 26.6 4.7 49 200-254 44-100 (188)
341 TIGR00329 gcp_kae1 metallohydr 20.1 1.5E+02 0.0033 29.6 4.6 44 177-220 44-87 (305)
342 PF00091 Tubulin: Tubulin/FtsZ 20.1 2E+02 0.0044 27.0 5.3 48 179-230 104-157 (216)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-56 Score=428.30 Aligned_cols=284 Identities=61% Similarity=0.957 Sum_probs=269.3
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
|.||+|||.++++.|+|||+||++.||++.++|...||++++++|+||+|||++|++++.. .+.+++|+|+||||+|+|
T Consensus 162 e~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~-gEknilVfDLGGGTFDVS 240 (663)
T KOG0100|consen 162 ETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKD-GEKNILVFDLGGGTFDVS 240 (663)
T ss_pred HHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccC-CcceEEEEEcCCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999876 578999999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++.+++++|++++++|+..+||++||+++++++.+.|+++.+.+++.+.+++.+|++++|++|+.||.+.+..+.+++++
T Consensus 241 lLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~f 320 (663)
T KOG0100|consen 241 LLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLF 320 (663)
T ss_pred EEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
+|.||+-++||+.||++-.+++.....+++++|++++++..+|+.|+||||++|+|.+|++|+++|+|++....+||++|
T Consensus 321 dG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEA 400 (663)
T KOG0100|consen 321 DGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEA 400 (663)
T ss_pred ccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHcCCCCCCccceEEEeeccCCCCccccccccccccccCC
Q 048693 241 VAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNSPLELKTTTSFAAQNLP 290 (539)
Q Consensus 241 vA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~~~~~~~q~~p 290 (539)
||+|||.+|..++|.. -..+++++|+.|++.+ ++++.--++.-+|
T Consensus 401 VAYGAAVQaGvlsGee--~t~divLLDv~pLtlG---IETvGGVMTklI~ 445 (663)
T KOG0100|consen 401 VAYGAAVQAGVLSGEE--DTGDIVLLDVNPLTLG---IETVGGVMTKLIP 445 (663)
T ss_pred HHhhhhhhhccccccc--CcCcEEEEeeccccce---eeeecceeecccc
Confidence 9999999999999963 4789999999999865 4544433333333
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.8e-48 Score=419.69 Aligned_cols=266 Identities=45% Similarity=0.767 Sum_probs=248.6
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.||+++|.+++++|||||++|++.||+++++|++.||++++++++||+|||++|+++... +..++|||+||||||+|+
T Consensus 151 ~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~--~~~vlV~DlGGGT~DvSi 228 (657)
T PTZ00186 151 TAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTK--DSLIAVYDLGGGTFDISV 228 (657)
T ss_pred HHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCC--CCEEEEEECCCCeEEEEE
Confidence 589999999999999999999999999999999999999999999999999999987653 789999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..
T Consensus 229 l~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~ 308 (657)
T PTZ00186 229 LEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITA 308 (657)
T ss_pred EEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeecc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999988888876543
Q ss_pred ---C-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ---G-IDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ---~-~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
| .++...|||++|+++++++++++...++++|++++++..+|+.|+||||+||+|.|+++|+++| +.++....||
T Consensus 309 ~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nP 387 (657)
T PTZ00186 309 NADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNP 387 (657)
T ss_pred CCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCC
Confidence 2 3578999999999999999999999999999999999999999999999999999999999999 5666788999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||+|||++|+.+++. ++++.+.|++|++.+
T Consensus 388 deaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slg 420 (657)
T PTZ00186 388 DEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLG 420 (657)
T ss_pred chHHHHhHHHHHHHhccc----cCceEEEeecccccc
Confidence 999999999999999973 578999999999876
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=419.57 Aligned_cols=273 Identities=68% Similarity=1.040 Sum_probs=257.2
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.||+++|.++.++|||||++|++.||+++++||+.||++++.+++||+|||++|++......+..++|||+||||+|+|+
T Consensus 131 ~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv 210 (653)
T PTZ00009 131 IAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSL 210 (653)
T ss_pred HHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEE
Confidence 68899999999999999999999999999999999999999999999999999988765434678999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKT-EKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~-~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
+++.++.++++++.++..+||++||.+|++++.++|.+++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++.++
T Consensus 211 ~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~ 290 (653)
T PTZ00009 211 LTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290 (653)
T ss_pred EEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecc
Confidence 9999999999999999999999999999999999998776 467778899999999999999999999999999999888
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
++.++..+|||++|+++++++++++.+.|+++|++++++..+|+.|+|+||+||+|.|+++|++.|++.++....||+++
T Consensus 291 ~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdea 370 (653)
T PTZ00009 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEA 370 (653)
T ss_pred CCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchH
Confidence 99999999999999999999999999999999999999889999999999999999999999999976778889999999
Q ss_pred hhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 241 VAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 241 vA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
||+|||++|+.+++..+++++++.++|+.|++++
T Consensus 371 VA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slg 404 (653)
T PTZ00009 371 VAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLG 404 (653)
T ss_pred HhhhhhhhHHHhcCCccccccceEEEeecccccC
Confidence 9999999999999876678899999999999876
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.4e-47 Score=412.27 Aligned_cols=266 Identities=47% Similarity=0.761 Sum_probs=249.3
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|++++|.+++++|||||++|++.||+++++||+.||++++.+++||+|||++|++.... +..++|||+||||+|+|+
T Consensus 126 ~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~--~~~vlV~DlGgGT~Dvsv 203 (668)
T PRK13410 126 DASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRSS--SQTVLVFDLGGGTFDVSL 203 (668)
T ss_pred HHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccCC--CCEEEEEECCCCeEEEEE
Confidence 588999999999999999999999999999999999999999999999999999987653 789999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|.++.+.++..+++++.+|+.+||++|+.||.+..+.+.++.+..
T Consensus 204 ~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~ 283 (668)
T PRK13410 204 LEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITA 283 (668)
T ss_pred EEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeec
Confidence 99999999999999999999999999999999999998888888888999999999999999999999988888876643
Q ss_pred C----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 G----IDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ~----~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+ .++...|||++|+++++++++++...|+++|+++++...+|+.|+|+||+||+|.|++.|++.| +.++....||
T Consensus 284 ~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~np 362 (668)
T PRK13410 284 TEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362 (668)
T ss_pred CCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCC
Confidence 2 4678899999999999999999999999999999999999999999999999999999999999 5778888999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||+|||++|+.+++. ++++.++|+.|++.+
T Consensus 363 deaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slg 395 (668)
T PRK13410 363 DEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLG 395 (668)
T ss_pred chHHHHhHHHHHHhhccc----ccceeEEeecccccc
Confidence 999999999999999873 678999999999876
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5e-47 Score=414.73 Aligned_cols=268 Identities=51% Similarity=0.815 Sum_probs=250.3
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.||.++|.++.++|||||++|++.||+++++||+.||++++.+++||+|||++|++.... .+..++|||+||||+|+|+
T Consensus 124 ~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~-~~~~vlV~DlGgGT~dvsi 202 (653)
T PRK13411 124 DAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQD-QEQLILVFDLGGGTFDVSI 202 (653)
T ss_pred HHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccC-CCCEEEEEEcCCCeEEEEE
Confidence 588999999999999999999999999999999999999999999999999999886543 4678999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|.++.+.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..
T Consensus 203 ~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~ 282 (653)
T PRK13411 203 LQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITA 282 (653)
T ss_pred EEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeecc
Confidence 99999999999999999999999999999999999998888888889999999999999999999999988888876543
Q ss_pred ----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ----GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ----~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+.++.+.|||++|+++++++++++.+.|+++|+++++...+|+.|+|+||+||+|+|++.|++.|++.++....||
T Consensus 283 d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~np 362 (653)
T PRK13411 283 DETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNP 362 (653)
T ss_pred CCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCc
Confidence 3578899999999999999999999999999999999989999999999999999999999999977788889999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||+|||++|+.+++. ++++.++|+.|++++
T Consensus 363 deaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slg 395 (653)
T PRK13411 363 DEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLG 395 (653)
T ss_pred hHHHHHHHHHHHHhhcCC----ccceeeeecccceee
Confidence 999999999999999874 678999999999876
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2e-46 Score=410.06 Aligned_cols=267 Identities=49% Similarity=0.808 Sum_probs=249.1
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
+.||.++|.++.++|||||++|++.||+++++||+.||++++.+++||+|||++|+..... +..++|||+||||+|+|
T Consensus 164 ~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~--~~~vlV~DlGgGT~DvS 241 (663)
T PTZ00400 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKND--GKTIAVYDLGGGTFDIS 241 (663)
T ss_pred HHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccCC--CcEEEEEeCCCCeEEEE
Confidence 3688999999999999999999999999999999999999999999999999999987653 78999999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++++.++.++++++.++..+||++||++|++++.++|.++++.++..+++.+.+|+.+||++|+.||.+....+.++.+.
T Consensus 242 v~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~ 321 (663)
T PTZ00400 242 ILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFIT 321 (663)
T ss_pred EEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeec
Confidence 99999999999999999999999999999999999999888888888899999999999999999999988888887654
Q ss_pred CC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCC
Q 048693 161 EG----IDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNIN 236 (539)
Q Consensus 161 ~~----~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~ 236 (539)
.+ .++.++|||++|+++++++++++.+.++++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++....|
T Consensus 322 ~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~n 400 (663)
T PTZ00400 322 ADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVN 400 (663)
T ss_pred cCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCC
Confidence 33 4788999999999999999999999999999999999999999999999999999999999999 567788899
Q ss_pred cchhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 237 PDEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 237 p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
|+++||+|||++|+.+++. ++++.+.|+.|++++
T Consensus 401 pdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slg 434 (663)
T PTZ00400 401 PDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLG 434 (663)
T ss_pred CccceeeccHHHHHhhcCC----ccceEEEeccccceE
Confidence 9999999999999999873 578999999999876
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=3.5e-46 Score=408.41 Aligned_cols=266 Identities=49% Similarity=0.787 Sum_probs=248.6
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|+.++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|++.... +..++|||+||||+|+|+
T Consensus 163 ~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~--~~~vlV~DlGgGT~DvSi 240 (673)
T PLN03184 163 DASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKS--NETILVFDLGGGTFDVSV 240 (673)
T ss_pred HHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCC--CCEEEEEECCCCeEEEEE
Confidence 588999999999999999999999999999999999999999999999999999987653 678999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..
T Consensus 241 ~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~ 320 (673)
T PLN03184 241 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITA 320 (673)
T ss_pred EEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeec
Confidence 99999999999999999999999999999999999998888888889999999999999999999999988888875432
Q ss_pred ----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ----GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ----~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+.++...|||++|+++++++++++...|+++|+++++...+|+.|+|+||+||+|.|++.|++.| +.++....||
T Consensus 321 ~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~np 399 (673)
T PLN03184 321 TADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNP 399 (673)
T ss_pred cCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCc
Confidence 25788899999999999999999999999999999999999999999999999999999999999 5677888999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||+|||++|+.+++. ++++.++|++|++++
T Consensus 400 deaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slg 432 (673)
T PLN03184 400 DEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLG 432 (673)
T ss_pred chHHHHHHHHHHHHhccC----ccceEEEecccccce
Confidence 999999999999999973 678999999999876
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=9.3e-46 Score=405.12 Aligned_cols=266 Identities=50% Similarity=0.824 Sum_probs=249.7
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|++++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|++... .+..++|||+||||||+|+
T Consensus 124 ~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv 201 (627)
T PRK00290 124 DAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSI 201 (627)
T ss_pred HHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEE
Confidence 58899999999999999999999999999999999999999999999999999988764 4789999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..
T Consensus 202 ~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~ 281 (627)
T PRK00290 202 LEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITA 281 (627)
T ss_pred EEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccc
Confidence 99999999999999999999999999999999999999888888889999999999999999999999998888876643
Q ss_pred ----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ----GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ----~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+.++.+.|||++|+++++++++++.+.|+++|+++++...+|+.|+|+||+||+|.|++.|++.| +.++....||
T Consensus 282 d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~np 360 (627)
T PRK00290 282 DASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNP 360 (627)
T ss_pred CCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCC
Confidence 25788999999999999999999999999999999999999999999999999999999999999 6778889999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||.|||++|+.+++. ++++.++|+.|++++
T Consensus 361 deava~GAa~~aa~l~~~----~~~~~~~d~~~~slg 393 (627)
T PRK00290 361 DEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLG 393 (627)
T ss_pred hHHHHHhHHHHHHHhcCC----ccceeeeeccceEEE
Confidence 999999999999999973 678999999998865
No 9
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.4e-45 Score=402.44 Aligned_cols=267 Identities=50% Similarity=0.807 Sum_probs=249.0
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|++++|.++.++|||||++|++.||+++++||+.||++++.+++||+|||++|++... ..+..++|||+||||+|+|+
T Consensus 121 ~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv 199 (595)
T TIGR02350 121 DAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSI 199 (595)
T ss_pred HHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEE
Confidence 58899999999999999999999999999999999999999999999999999987653 24789999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|.++++.++..+++.+.+|+++||++|+.||.+..+.+.++.+..
T Consensus 200 ~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~ 279 (595)
T TIGR02350 200 LEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITA 279 (595)
T ss_pred EEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeeccc
Confidence 99999999999999999999999999999999999999888888888999999999999999999999988888876543
Q ss_pred ----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ----GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ----~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+.++.+.|||++|+++++++++++.+.|+++|++++.+..+|+.|+|+||+||+|+|++.|++.|+ .++....||
T Consensus 280 ~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~p 358 (595)
T TIGR02350 280 DASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNP 358 (595)
T ss_pred CCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCc
Confidence 356889999999999999999999999999999999999999999999999999999999999994 778889999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||.|||++|+.+++. ++++.+.|+.|++++
T Consensus 359 deava~GAa~~aa~l~~~----~~~~~~~d~~~~~ig 391 (595)
T TIGR02350 359 DEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLG 391 (595)
T ss_pred HHHHHHHHHHHHHHhcCC----cccceeeecccceeE
Confidence 999999999999999874 678999999999875
No 10
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.9e-45 Score=396.59 Aligned_cols=262 Identities=41% Similarity=0.688 Sum_probs=241.9
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|+.++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|++.... +..++|||+||||+|+|+
T Consensus 120 ~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGgGT~DvSi 197 (599)
T TIGR01991 120 RAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS--EGIYAVYDLGGGTFDVSI 197 (599)
T ss_pred HHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCC--CCEEEEEEcCCCeEEEEE
Confidence 588999999999999999999999999999999999999999999999999999887653 788999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.+++ +.+...+++.+.+|+.++|++|+.||.+..+.+.++. +
T Consensus 198 ~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~ 271 (599)
T TIGR01991 198 LKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--D 271 (599)
T ss_pred EEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--C
Confidence 999999999999999999999999999999998654 4444568889999999999999999999888888764 6
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhh
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAV 241 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~av 241 (539)
|.++..+|||++|+++++++++++.+.|+++|++++....+|+.|+|+||+|++|+|++.|++.| +.++....||+++|
T Consensus 272 g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaV 350 (599)
T TIGR01991 272 GKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVV 350 (599)
T ss_pred CcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999 56677788999999
Q ss_pred hchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 242 AYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 242 A~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
|.|||++|+.+++. +..+++++.|++|++.+
T Consensus 351 A~GAai~a~~l~~~--~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 351 ALGAAIQADLLAGN--RIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHHHHHHHhccc--cccCceEEEEeeeeeeE
Confidence 99999999999864 34678999999999875
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4e-45 Score=398.90 Aligned_cols=266 Identities=52% Similarity=0.842 Sum_probs=248.0
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|+.++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|+..... +..++|||+||||+|+|+
T Consensus 126 ~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~--~~~vlV~DlGgGT~DvSv 203 (621)
T CHL00094 126 DASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKN--NETILVFDLGGGTFDVSI 203 (621)
T ss_pred HHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccCC--CCEEEEEEcCCCeEEEEE
Confidence 578899999999999999999999999999999999999999999999999999887653 678999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.++|.++++.++..+++.+.+|+.+||++|+.||.+....+.++.+..
T Consensus 204 ~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~ 283 (621)
T CHL00094 204 LEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITA 283 (621)
T ss_pred EEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999888888876543
Q ss_pred ----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 162 ----GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 162 ----~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+.++...|||++|+++++++++++...|++.|+++++...+|+.|+|+||+||+|.|++.|++.| +.++....||
T Consensus 284 ~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~p 362 (621)
T CHL00094 284 TQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNP 362 (621)
T ss_pred CCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCc
Confidence 24688899999999999999999999999999999998899999999999999999999999999 5678888999
Q ss_pred chhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 238 DEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+++||+|||++|+.+++. ++++.++|+.|++++
T Consensus 363 deava~GAA~~aa~ls~~----~~~~~~~d~~~~~lg 395 (621)
T CHL00094 363 DEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLG 395 (621)
T ss_pred hhHHHhhhHHHHHHhcCC----ccceeeeeeeceeee
Confidence 999999999999999873 678999999999875
No 12
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=396.17 Aligned_cols=267 Identities=55% Similarity=0.836 Sum_probs=254.9
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
+.||.++|.+++++|||||+||++.||+++++|++.||++++++++||+|||++|+++.. .+..++|||+||||||+|
T Consensus 110 ~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvS 187 (579)
T COG0443 110 EDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVS 187 (579)
T ss_pred HHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEE
Confidence 368999999999999999999999999999999999999999999999999999999887 489999999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++++.++.++++++.++..+||++||.+|.+++..+|..+.+.++..+++...||+.++|++|+.||...+..+.+++..
T Consensus 188 ll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~ 267 (579)
T COG0443 188 LLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIG 267 (579)
T ss_pred EEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcc
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999998777
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
.+.++..+|||++||+++.++++++...+.+++.+++++..+|+.|+|+||++|+|.|++.++++|+ +++...+||+++
T Consensus 268 ~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdea 346 (579)
T COG0443 268 GDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEA 346 (579)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHH
Confidence 6777888999999999999999999999999999999999999999999999999999999999995 888999999999
Q ss_pred hhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 241 VAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 241 vA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
+|.|||++|+.+++... +++++|+.|++.+
T Consensus 347 va~GAa~qa~~l~~~~~----d~ll~Dv~plslg 376 (579)
T COG0443 347 VALGAAIQAAVLSGEVP----DVLLLDVIPLSLG 376 (579)
T ss_pred HHHHHHHHHHhhcCccc----CceEEeeeeeccc
Confidence 99999999999998633 8999999999876
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=383.57 Aligned_cols=274 Identities=68% Similarity=1.044 Sum_probs=265.0
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
++||.|+|.++.++|+|||++|++.||+++++|+..||++++++++||+|||++|++++......+++|+|+||||+|++
T Consensus 133 e~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs 212 (620)
T KOG0101|consen 133 ETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVS 212 (620)
T ss_pred HHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeee
Confidence 47999999999999999999999999999999999999999999999999999999888766678899999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++.+.++.+.+.++.++.++||++||+.|.+|+..+|+++++.++..+.+++.||+.++|.+|+.||....+++.+++++
T Consensus 213 ~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~ 292 (620)
T KOG0101|consen 213 VLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLY 292 (620)
T ss_pred eEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
+|.++...|+|.+|++++.+++......+...|+++.++..+|+.|+||||++++|.+++.++++|+++++..++|||++
T Consensus 293 ~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDea 372 (620)
T KOG0101|consen 293 EGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEA 372 (620)
T ss_pred ccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred hhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 241 VAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 241 vA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
||+|||++|+.++|..+..+.+++++|+.|++.+
T Consensus 373 vA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~g 406 (620)
T KOG0101|consen 373 VAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLG 406 (620)
T ss_pred HHhhHHHHhhhccCCccccccceeeeeccccccc
Confidence 9999999999999988877899999999999654
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.6e-44 Score=388.96 Aligned_cols=258 Identities=41% Similarity=0.679 Sum_probs=235.2
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|++++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|++.... +..++|||+||||+|+|+
T Consensus 140 ~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGGGT~DvSv 217 (616)
T PRK05183 140 RAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQ--EGVIAVYDLGGGTFDISI 217 (616)
T ss_pred HHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCC--CCEEEEEECCCCeEEEEE
Confidence 588999999999999999999999999999999999999999999999999999887653 788999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
+++.++.++++++.++..+||++||++|++++.+++. .+...+++...+|+.+||++|+.||.+..+.+.+...
T Consensus 218 ~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~-- 291 (616)
T PRK05183 218 LRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW-- 291 (616)
T ss_pred EEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC--
Confidence 9999999999999999999999999999999987653 3444678899999999999999999998888877432
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhh
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAV 241 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~av 241 (539)
...|||++|+++++++++++.+.++++|+++++...+|+.|+|+||+||+|.|++.|++.| +.++....||+++|
T Consensus 292 ----~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaV 366 (616)
T PRK05183 292 ----QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVV 366 (616)
T ss_pred ----CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHH
Confidence 2249999999999999999999999999999999999999999999999999999999999 45666788999999
Q ss_pred hchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 242 AYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 242 A~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
|+|||++|+.+++. +..+++.+.|++|++.+
T Consensus 367 A~GAAi~a~~l~~~--~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 367 AIGAAIQADILAGN--KPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HHHHHHHHHHhccc--cccCceEEEeecccccc
Confidence 99999999999974 34578999999999876
No 15
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=368.50 Aligned_cols=267 Identities=51% Similarity=0.806 Sum_probs=254.8
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
+.||+|+|.++...|+|||+||++.||++.++|.++||++++++++||+|||++|+++... ...++|+|+||||+|++
T Consensus 150 ~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdis 227 (640)
T KOG0102|consen 150 ETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDIS 227 (640)
T ss_pred HHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeee
Confidence 4799999999999999999999999999999999999999999999999999999999876 78899999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++++.+++|++.+++++..+||++||..+.+++..+|....+.++..+..+++||++++|++|.+||......+.++.+.
T Consensus 228 ilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iT 307 (640)
T KOG0102|consen 228 ILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFIT 307 (640)
T ss_pred eehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887665
Q ss_pred CC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCC
Q 048693 161 EG----IDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNIN 236 (539)
Q Consensus 161 ~~----~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~ 236 (539)
.+ ..+..++||.+|++++.+++++.++..++.|++++....+|+.|+|+||++|+|.+++.+++.| +.......|
T Consensus 308 ada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vn 386 (640)
T KOG0102|consen 308 ADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVN 386 (640)
T ss_pred ccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcC
Confidence 44 5678999999999999999999999999999999999999999999999999999999999999 677888999
Q ss_pred cchhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 237 PDEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 237 p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
|+++||.|||+++..++|. +++++|+|+.|++.+
T Consensus 387 Pdeava~GAaiqggvl~ge----VkdvlLLdVtpLsLg 420 (640)
T KOG0102|consen 387 PDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLG 420 (640)
T ss_pred Ccchhccchhhccchhhcc----ccceeeeecchHHHH
Confidence 9999999999999999985 899999999999865
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=4.8e-44 Score=393.55 Aligned_cols=269 Identities=51% Similarity=0.816 Sum_probs=242.8
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.|+.++|.++.++|||||++|+..||++|++||+.||++++.+++||+|||++|++.... .+..+||||+||||+|+++
T Consensus 126 ~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~ 204 (602)
T PF00012_consen 126 MAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSV 204 (602)
T ss_dssp HHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEE
T ss_pred cchhhcccccccceeeechhhhhhhhhcccccccccccccceeecccccccccccccccc-cccceeccccccceEeeee
Confidence 588899999999999999999999999999999999999999999999999999877665 6789999999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEccc
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSS--TSQTTIEIDSL 159 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~--~~~~~~~i~~~ 159 (539)
+++.++.+++++..++..+||++||++|++++.+++.++.+.++..+++.+.+|+.++|++|+.||. +.+..+.++.+
T Consensus 205 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~ 284 (602)
T PF00012_consen 205 VEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESL 284 (602)
T ss_dssp EEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEE
T ss_pred hhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999998888888999999999999999999999 66777777777
Q ss_pred cC-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcc
Q 048693 160 YE-GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPD 238 (539)
Q Consensus 160 ~~-~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~ 238 (539)
.+ |.++.+.|||++|+++++++++++.+.|+++|++++.+..+|+.|+|+||+|++|+|++.|++.|+ .++..+.||+
T Consensus 285 ~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~ 363 (602)
T PF00012_consen 285 YDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPD 363 (602)
T ss_dssp ETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TT
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccc
Confidence 76 889999999999999999999999999999999999888999999999999999999999999995 7888899999
Q ss_pred hhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 239 EAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 239 ~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
++||+|||++|+.+++. ++++++.+.|+.|++++
T Consensus 364 ~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~ 397 (602)
T PF00012_consen 364 EAVARGAALYAAILSGS--FRVKDIKIIDVTPFSIG 397 (602)
T ss_dssp THHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEE
T ss_pred cccccccccchhhhccc--ccccccccccccccccc
Confidence 99999999999999863 56778889999998764
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.3e-42 Score=374.23 Aligned_cols=245 Identities=36% Similarity=0.583 Sum_probs=218.2
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
+.||+++|.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|+++... ...++|+|+||||+|+|
T Consensus 131 ~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGGGT~DvS 208 (595)
T PRK01433 131 NQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ--KGCYLVYDLGGGTFDVS 208 (595)
T ss_pred HHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCC--CCEEEEEECCCCcEEEE
Confidence 3689999999999999999999999999999999999999999999999999999987643 66899999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++++.++.++++++.++..+||++||.+|.+++..+|. ...+. +.++.+|++|+.||.+.....
T Consensus 209 i~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~------~~~~~----~~~~~~ekaK~~LS~~~~~~~------ 272 (595)
T PRK01433 209 ILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFD------LPNSI----DTLQLAKKAKETLTYKDSFNN------ 272 (595)
T ss_pred EEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcC------CCCCH----HHHHHHHHHHHhcCCCccccc------
Confidence 99999999999999999999999999999999987663 12222 233469999999998764221
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
...+|||++|+++++++++++...++++|++++ ..+|+.|+|+||+|++|+|++.|++.| +.++..+.||+++
T Consensus 273 ----~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdea 345 (595)
T PRK01433 273 ----DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKA 345 (595)
T ss_pred ----ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHH
Confidence 167899999999999999999999999999988 568999999999999999999999999 5677888999999
Q ss_pred hhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 241 VAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 241 vA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
||+|||++|+.+++. .++++++|+.|++.+
T Consensus 346 VA~GAAi~a~~l~~~----~~~~~l~Dv~p~slg 375 (595)
T PRK01433 346 VVWGAALQAENLIAP----HTNSLLIDVVPLSLG 375 (595)
T ss_pred HHHHHHHHHHHhhCC----ccceEEEEecccceE
Confidence 999999999999863 357899999999876
No 18
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=357.46 Aligned_cols=270 Identities=34% Similarity=0.577 Sum_probs=256.0
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhcccccc---CCCceEEEEEeCCceeE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKA---ASEKNVLIFDLGGGTFD 78 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~---~~~~~vlvvDiGggTtd 78 (539)
.||++..++|+++|||||.+|++.+|+++.+||++||++++.+|+|..|||+.|++.+.. ....+++|||||+|+|.
T Consensus 149 ~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~ 228 (902)
T KOG0104|consen 149 LAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTS 228 (902)
T ss_pred HHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCcee
Confidence 489999999999999999999999999999999999999999999999999999988643 46789999999999999
Q ss_pred EEEEEEe----------cCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHHHHHHc
Q 048693 79 VSLLAIE----------KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE--KDISGSPRAAQRLRKNCERAKRTL 146 (539)
Q Consensus 79 isv~~~~----------~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~rL~~~~e~~K~~l 146 (539)
.+++.+. ...+++++.+.+..+||..|+.+|.++|.+.|.+..+ .++..+++++.+|.++|+++|..|
T Consensus 229 Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vL 308 (902)
T KOG0104|consen 229 ATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVL 308 (902)
T ss_pred EEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHh
Confidence 9999986 2578999999999999999999999999999998876 467889999999999999999999
Q ss_pred CCCCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 048693 147 SSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFF 226 (539)
Q Consensus 147 s~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f 226 (539)
|.+.++...|+++.++.||..+|||++|+++|+++..++..+|+++|..++++.++|+.|+|+||++|+|.||+.|.+..
T Consensus 309 SANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v 388 (902)
T KOG0104|consen 309 SANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAV 388 (902)
T ss_pred hcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCcchhhhchHHHHHHHHcCCCCCCccceEEEeeccCCC
Q 048693 227 NGKRLCKNINPDEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYN 273 (539)
Q Consensus 227 ~~~~v~~~~~p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~ 273 (539)
+..++...+|.|||+++||+++||.++ ++|+++.+.+.|.++|++
T Consensus 389 ~~~ei~knlNaDEA~vmGav~~aA~LS--ksFKvKpf~V~D~~~yp~ 433 (902)
T KOG0104|consen 389 GKEELGKNLNADEAAVMGAVYQAAHLS--KSFKVKPFNVVDASVYPY 433 (902)
T ss_pred hHHHHhcccChhHHHHHHHHHHHHhhc--ccccccceeeeecccccE
Confidence 878899999999999999999999999 589999999999998875
No 19
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-42 Score=352.38 Aligned_cols=270 Identities=40% Similarity=0.646 Sum_probs=260.0
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhcccccc-----CCCceEEEEEeCCce
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKA-----ASEKNVLIFDLGGGT 76 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~-----~~~~~vlvvDiGggT 76 (539)
.||+.+..++.++||+||+||++.||+++.+||+.|||+.+++++|.+|+|++|++.+.. .++.+++++|||.++
T Consensus 128 ~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~ 207 (727)
T KOG0103|consen 128 TAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSS 207 (727)
T ss_pred HHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEeccccc
Confidence 588899999999999999999999999999999999999999999999999999987765 346789999999999
Q ss_pred eEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q 048693 77 FDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEI 156 (539)
Q Consensus 77 tdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i 156 (539)
+.+++..+.++.+.++++.++..+||++||+.|.+++..+|+.+++.++..++++..||+.++|+.|+.||.++....+|
T Consensus 208 ~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNI 287 (727)
T KOG0103|consen 208 YQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNI 287 (727)
T ss_pred ceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCC
Q 048693 157 DSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNIN 236 (539)
Q Consensus 157 ~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~ 236 (539)
++++++.|.+..|+|+|||+++.|+++++...+.++|+++++...+|+.|.++||+||+|.|.+.|+++| ++++.++.|
T Consensus 288 EcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN 366 (727)
T KOG0103|consen 288 ECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLN 366 (727)
T ss_pred hheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred cchhhhchHHHHHHHHcCCCCCCccceEEEeeccCCCC
Q 048693 237 PDEAVAYGAAVQAAVLSGNRSNKVEDIVILDVNPNYNS 274 (539)
Q Consensus 237 p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~~p~~~~ 274 (539)
.++|||+||||+.|.++ +.++++++-+.|+.|++.+
T Consensus 367 ~dEavarG~ALqcAIlS--P~frVRef~v~Di~pysIs 402 (727)
T KOG0103|consen 367 QDEAVARGAALQCAILS--PTFRVREFSVEDIVPYSIS 402 (727)
T ss_pred HHHHHHHhHHHHHHhcC--ccccceecceecccceeEE
Confidence 99999999999999999 5789999999999998763
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=7.2e-38 Score=326.39 Aligned_cols=242 Identities=26% Similarity=0.377 Sum_probs=204.5
Q ss_pred hhhhhhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeC
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFT-----NSQRQA---TKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLG 73 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~-----~~~r~~---l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiG 73 (539)
.||.++|.+++++|||||++|+ +.+|++ |++|++.||++.+.+++||+|||++|+.... .+..+||+|+|
T Consensus 140 ~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vlV~D~G 217 (450)
T PRK11678 140 QAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVLVVDIG 217 (450)
T ss_pred HHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEEEEEeC
Confidence 5889999999999999999998 777765 7999999999999999999999999986554 47889999999
Q ss_pred CceeEEEEEEEecC-------eeeEEEecCCCCCcHHHHHHHHH-HHHHHHHHHh----hcCC--------------C--
Q 048693 74 GGTFDVSLLAIEKG-------IFKVKATAGDTHLGGEDFDNRMV-NHFIQEFKRK----TEKD--------------I-- 125 (539)
Q Consensus 74 ggTtdisv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~~----~~~~--------------~-- 125 (539)
|||+|+|++++.+. ..+++++.| ..+||++||+.|+ +++...|... .+.. +
T Consensus 218 GGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~ 296 (450)
T PRK11678 218 GGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPA 296 (450)
T ss_pred CCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccch
Confidence 99999999999753 357888888 6899999999998 5677666421 1110 0
Q ss_pred -------------------CCCHHHH------------HHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHH
Q 048693 126 -------------------SGSPRAA------------QRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARF 174 (539)
Q Consensus 126 -------------------~~~~~~~------------~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~ 174 (539)
..+++.+ .+|++++|++|+.||.++.+.+.++.+. .++..+|||++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~ef 374 (450)
T PRK11678 297 QSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGL 374 (450)
T ss_pred hhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHH
Confidence 0123333 3678999999999999999988887543 457789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHH
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~ 252 (539)
+++++++++++.+.++++|++++.. ++.|+||||+|++|.|++.|++.|++.++.. .+|.++||.|+|++|.++
T Consensus 375 e~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~-g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 375 EEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVG-GDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEe-CCCcchHHHHHHHHHHhh
Confidence 9999999999999999999998865 5899999999999999999999997666654 599999999999999875
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=4.9e-31 Score=268.64 Aligned_cols=223 Identities=22% Similarity=0.389 Sum_probs=185.5
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 10 PVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
....+|||||++|+..+|+++++|++.||++.+.+++||+|||++++.+... +..++|+|+||||||+++++.+...
T Consensus 94 ~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~--~~~~lVvDiGggttdvsvv~~g~~~- 170 (336)
T PRK13928 94 SKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQ--PSGNMVVDIGGGTTDIAVLSLGGIV- 170 (336)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccC--CCeEEEEEeCCCeEEEEEEEeCCEE-
Confidence 3447999999999999999999999999999999999999999999886543 6779999999999999999975422
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC----eEEEEEc--cccCCc
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS----QTTIEID--SLYEGI 163 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~----~~~~~i~--~~~~~~ 163 (539)
..++.++||++||+.|++++..+|... .. .++||++|+.++... ...+.+. .+..+.
T Consensus 171 ----~~~~~~lGG~did~~i~~~l~~~~~~~----~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~ 233 (336)
T PRK13928 171 ----TSSSIKVAGDKFDEAIIRYIRKKYKLL----IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGL 233 (336)
T ss_pred ----EeCCcCCHHHHHHHHHHHHHHHHhchh----cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCC
Confidence 356789999999999999998666321 11 257899999886431 2233332 223456
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCC-eEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 164 DFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKT--DKSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 164 ~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~--~~~~i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
+..++|++++|++++++.++++.+.|++.|++++. ..+.++ .|+|+||+|++|+|++++++.| +.++....||+++
T Consensus 234 ~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~a 312 (336)
T PRK13928 234 PKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISC 312 (336)
T ss_pred ceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHH
Confidence 67789999999999999999999999999998763 345666 7999999999999999999999 6888888899999
Q ss_pred hhchHHHHHHHHc
Q 048693 241 VAYGAAVQAAVLS 253 (539)
Q Consensus 241 vA~GAal~a~~~~ 253 (539)
||+||++++..+.
T Consensus 313 va~Gaa~~~~~~~ 325 (336)
T PRK13928 313 VALGTGKMLENID 325 (336)
T ss_pred HHHHHHHHHhchH
Confidence 9999999987753
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.97 E-value=1.6e-29 Score=256.87 Aligned_cols=227 Identities=23% Similarity=0.362 Sum_probs=187.4
Q ss_pred hhhhhCCCCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 3 AEDYVGSPVS--NAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 3 ae~~~g~~v~--~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
|+.++|..+. .+|||+|++|+..+|+++.+|++.||++.+.+++||+|||++++++... ...++|+|+|+||||++
T Consensus 88 ~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~--~~~~lvvDiG~gtt~v~ 165 (335)
T PRK13929 88 AGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDE--PVANVVVDIGGGTTEVA 165 (335)
T ss_pred HHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcCC--CceEEEEEeCCCeEEEE
Confidence 5567777665 8999999999999999999999999999999999999999999876543 67899999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC----eEEEEE
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS----QTTIEI 156 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~----~~~~~i 156 (539)
++..++.. ..++..+||++||+.|.+++.+++. .... ...||++|+.++... ...+.+
T Consensus 166 vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~~----~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v 227 (335)
T PRK13929 166 IISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKYN----LLIG---------ERTAEQVKMEIGYALIEHEPETMEV 227 (335)
T ss_pred EEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHhC----cCcC---------HHHHHHHHHHHcCCCCCCCCceEEE
Confidence 99865432 3556789999999999999976542 2211 267999999997632 222333
Q ss_pred c--cccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCC-eEEEEcCCCChHHHHHHHHHHhCCCcc
Q 048693 157 D--SLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTD--KSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRL 231 (539)
Q Consensus 157 ~--~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v 231 (539)
. .+..+.+..+.+++++|++++.+++.+|.+.|++.|++.... .+.++ +|+|+||+|++|++++++++.| +.++
T Consensus 228 ~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v 306 (335)
T PRK13929 228 RGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPV 306 (335)
T ss_pred eCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCc
Confidence 2 223455678899999999999999999999999999987643 35567 6999999999999999999999 6888
Q ss_pred cccCCcchhhhchHHHHHH
Q 048693 232 CKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 232 ~~~~~p~~avA~GAal~a~ 250 (539)
....||+++|++||+..-.
T Consensus 307 ~~~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 307 HVAANPLESVAIGTGRSLE 325 (335)
T ss_pred eeCCCHHHHHHHHHHHHHH
Confidence 8889999999999998743
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=8.6e-29 Score=252.37 Aligned_cols=220 Identities=25% Similarity=0.407 Sum_probs=181.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeE
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKV 91 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v 91 (539)
..+|+|+|++|+..+|+++++|++.||++.+.+++||+|||++++..... +..++|+|+|+||||+++++.++..
T Consensus 97 ~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~--~~~~lvvDiGggttdvs~v~~~~~~--- 171 (334)
T PRK13927 97 PRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTE--PTGSMVVDIGGGTTEVAVISLGGIV--- 171 (334)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccC--CCeEEEEEeCCCeEEEEEEecCCeE---
Confidence 38999999999999999999999999999999999999999999876543 6678999999999999999876433
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCe----EEEEE--ccccCCcee
Q 048693 92 KATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQ----TTIEI--DSLYEGIDF 165 (539)
Q Consensus 92 ~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~----~~~~i--~~~~~~~~~ 165 (539)
..+...+||++||+.|.+++.+++. ... . .+.+|++|+.++.... ..+.+ +....+.+.
T Consensus 172 --~~~~~~lGG~~id~~l~~~l~~~~~----~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (334)
T PRK13927 172 --YSKSVRVGGDKFDEAIINYVRRNYN----LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPK 236 (334)
T ss_pred --eeCCcCChHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCe
Confidence 3455789999999999999976552 211 1 1568999998875322 22333 223345666
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCC-eEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhh
Q 048693 166 SSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDK--SSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVA 242 (539)
Q Consensus 166 ~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA 242 (539)
.++|+|++|++++.+.+++|.+.|.+.|+++.... +.++ .|+|+||+|++|+++++|++.| +.++....||+++||
T Consensus 237 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava 315 (334)
T PRK13927 237 TITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVA 315 (334)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHH
Confidence 88999999999999999999999999999876432 2334 5999999999999999999999 678888899999999
Q ss_pred chHHHHHHHH
Q 048693 243 YGAAVQAAVL 252 (539)
Q Consensus 243 ~GAal~a~~~ 252 (539)
+||++++...
T Consensus 316 ~Ga~~~~~~~ 325 (334)
T PRK13927 316 RGTGKALENI 325 (334)
T ss_pred HHHHHHHhhH
Confidence 9999998764
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=1.2e-27 Score=243.43 Aligned_cols=220 Identities=24% Similarity=0.399 Sum_probs=178.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeE
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKV 91 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v 91 (539)
..+|+|+|++|+..+|++++++++.+|++.+.+++||+|||++|+.... .+..++|+|+|+||||+++++.++..
T Consensus 99 ~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvDiG~gttdvs~v~~~~~~--- 173 (333)
T TIGR00904 99 PRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVDIGGGTTEVAVISLGGIV--- 173 (333)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEEcCCCeEEEEEEEeCCEE---
Confidence 3899999999999999999999999999999999999999999987554 36778999999999999999876433
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCe-----EEEEEcc--ccCCce
Q 048693 92 KATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQ-----TTIEIDS--LYEGID 164 (539)
Q Consensus 92 ~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~-----~~~~i~~--~~~~~~ 164 (539)
..++..+||++||+.|.+++.+++. .... ++.||++|+.++.... ..+.+.. ...+..
T Consensus 174 --~~~~~~lGG~did~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (333)
T TIGR00904 174 --VSRSIRVGGDEFDEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLP 238 (333)
T ss_pred --ecCCccchHHHHHHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCC
Confidence 2456789999999999999976542 1111 2678999999865321 1222211 112344
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCC-C-eEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhh
Q 048693 165 FSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDK-SSV-D-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAV 241 (539)
Q Consensus 165 ~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~av 241 (539)
....++++++.+++.+.++++.+.|.+.+++..... .++ + .|+|+||+|++|+++++|++.| +.++....||+++|
T Consensus 239 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~v 317 (333)
T TIGR00904 239 RTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCV 317 (333)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHH
Confidence 567899999999999999999999999999876432 233 3 7999999999999999999999 78899999999999
Q ss_pred hchHHHHHHHH
Q 048693 242 AYGAAVQAAVL 252 (539)
Q Consensus 242 A~GAal~a~~~ 252 (539)
|.||++++..+
T Consensus 318 a~Ga~~~~~~~ 328 (333)
T TIGR00904 318 AKGTGKALEDI 328 (333)
T ss_pred HHHHHHHHhCH
Confidence 99999987653
No 25
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=2.7e-28 Score=235.12 Aligned_cols=187 Identities=22% Similarity=0.347 Sum_probs=160.8
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.||.++|.++.++|+|||++|++.||+++.+|++.||++.+.+++||.|+|++|+.. ..+|+|+||||||+++
T Consensus 52 ~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------~~~vvDiGggtt~i~i 124 (239)
T TIGR02529 52 TLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------NGAVVDVGGGTTGISI 124 (239)
T ss_pred HHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------CcEEEEeCCCcEEEEE
Confidence 577889999999999999999999999999999999999999999999999998643 2599999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
++.+...+ .++..+||++||+.|.+.+. .+ +.+||++|+.++
T Consensus 125 ~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~-------------- 166 (239)
T TIGR02529 125 LKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHK-------------- 166 (239)
T ss_pred EECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC--------------
Confidence 87443222 45678999999998876552 11 178899998753
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhh
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAV 241 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~av 241 (539)
+.+++.++++++++++.+.+++.|++. +++.|+|+||+|++|++++++++.| +.++..+.||++++
T Consensus 167 --------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~v 232 (239)
T TIGR02529 167 --------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVT 232 (239)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeeh
Confidence 145678899999999999999999854 3579999999999999999999999 78899999999999
Q ss_pred hchHHH
Q 048693 242 AYGAAV 247 (539)
Q Consensus 242 A~GAal 247 (539)
|.||++
T Consensus 233 a~Gaa~ 238 (239)
T TIGR02529 233 PLGIAM 238 (239)
T ss_pred hheeec
Confidence 999986
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1.8e-27 Score=242.88 Aligned_cols=225 Identities=23% Similarity=0.362 Sum_probs=181.9
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecC
Q 048693 8 GSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKG 87 (539)
Q Consensus 8 g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~ 87 (539)
+.....+|+|+|++|+..+|+.+.++++.+|++.+.+++||+|||++++..... ...++|||+|+||||++++..+..
T Consensus 97 ~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~--~~~~lVvDiG~gttdvs~v~~g~~ 174 (335)
T PRK13930 97 FFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTE--PVGNMVVDIGGGTTEVAVISLGGI 174 (335)
T ss_pred cCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCC--CCceEEEEeCCCeEEEEEEEeCCE
Confidence 344678999999999999999999999999999999999999999999876543 456799999999999999986543
Q ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCe----EEEEEc--cccC
Q 048693 88 IFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQ----TTIEID--SLYE 161 (539)
Q Consensus 88 ~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~----~~~~i~--~~~~ 161 (539)
. ..+..++||.+||+.|.+++.+++. .... .+.+|++|+.++.... ..+.+. ....
T Consensus 175 ~-----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~ 236 (335)
T PRK13930 175 V-----YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVT 236 (335)
T ss_pred E-----eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCC
Confidence 2 2566899999999999999976542 2211 1578999999865432 123332 2233
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCC-eEEEEcCCCChHHHHHHHHHHhCCCcccccCCcc
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDK--SSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPD 238 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~ 238 (539)
+.+....|++++|++++.+.++++.+.|.+.|++..... +.++ .|+|+||+|++|+++++|++.| +.++....+|+
T Consensus 237 ~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~ 315 (335)
T PRK13930 237 GLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPL 315 (335)
T ss_pred CCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHH
Confidence 455678899999999999999999999999999765332 2345 4999999999999999999999 67888888999
Q ss_pred hhhhchHHHHHHHHc
Q 048693 239 EAVAYGAAVQAAVLS 253 (539)
Q Consensus 239 ~avA~GAal~a~~~~ 253 (539)
+++|+||++.+....
T Consensus 316 ~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 316 TCVARGTGKALENLD 330 (335)
T ss_pred HHHHHHHHHHHhChH
Confidence 999999999987654
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.94 E-value=2.2e-26 Score=228.66 Aligned_cols=219 Identities=26% Similarity=0.399 Sum_probs=170.4
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 10 PVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
.-..++++||+.-++.+|+++.+++..+|.+.+.+++||.|||+..+++... +...||+|+|+||||++++..++-.
T Consensus 92 ~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~--~~g~miVDIG~GtTdiavislggiv- 168 (326)
T PF06723_consen 92 FRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFE--PRGSMIVDIGGGTTDIAVISLGGIV- 168 (326)
T ss_dssp S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS--SS-EEEEEE-SS-EEEEEEETTEEE-
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCC--CCceEEEEECCCeEEEEEEECCCEE-
Confidence 3457999999999999999999999999999999999999999999988765 7889999999999999999754422
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC----eEEEEE--ccccCCc
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS----QTTIEI--DSLYEGI 163 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~----~~~~~i--~~~~~~~ 163 (539)
.+....+||++||++|.+++.++|. ..+.. +.||++|++++... ...+.+ ..+.+|.
T Consensus 169 ----~s~si~~gG~~~DeaI~~~ir~~y~----l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGl 231 (326)
T PF06723_consen 169 ----ASRSIRIGGDDIDEAIIRYIREKYN----LLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGL 231 (326)
T ss_dssp ----EEEEES-SHHHHHHHHHHHHHHHHS----EE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTC
T ss_pred ----EEEEEEecCcchhHHHHHHHHHhhC----cccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCC
Confidence 2444678999999999999987773 22221 78899999986532 223444 3456788
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCC--CeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 164 DFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDK-SSV--DDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 164 ~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
...+.|+.+++.+++++.+.+|.+.|++.|++..... .|| ++|+|+||+|+++++.++|++.+ +.++....||..+
T Consensus 232 P~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~ 310 (326)
T PF06723_consen 232 PKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTA 310 (326)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTH
T ss_pred cEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHH
Confidence 8999999999999999999999999999999765332 233 68999999999999999999999 7999999999999
Q ss_pred hhchHHHHH
Q 048693 241 VAYGAAVQA 249 (539)
Q Consensus 241 vA~GAal~a 249 (539)
|+.||....
T Consensus 311 va~G~~~~l 319 (326)
T PF06723_consen 311 VARGAGKLL 319 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999998754
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=9.4e-26 Score=221.23 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=162.7
Q ss_pred hhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEE
Q 048693 2 IAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSL 81 (539)
Q Consensus 2 ~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv 81 (539)
.||+++|.++..++++||.+|+..+++++.++++.||++...+++||.|++.++.+. ..+++|||||||++++
T Consensus 79 ~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~vvDIGggtt~i~v 151 (267)
T PRK15080 79 TLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGAVVDIGGGTTGISI 151 (267)
T ss_pred HHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcEEEEeCCCcEEEEE
Confidence 578889999999999999999999999999999999999999999999999987542 2589999999999999
Q ss_pred EEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccC
Q 048693 82 LAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYE 161 (539)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~ 161 (539)
++.++.. . .++..+||++||+.|++.+.- + +++||++|+.++
T Consensus 152 ~~~g~~~----~-~~~~~~GG~~it~~Ia~~l~i--------~-----------~~eAE~lK~~~~-------------- 193 (267)
T PRK15080 152 LKDGKVV----Y-SADEPTGGTHMSLVLAGAYGI--------S-----------FEEAEQYKRDPK-------------- 193 (267)
T ss_pred EECCeEE----E-EecccCchHHHHHHHHHHhCC--------C-----------HHHHHHHHhccC--------------
Confidence 8643322 2 356799999999999877621 1 267888888742
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhh
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAV 241 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~av 241 (539)
+++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|++++.+++.| +.++..+.||++++
T Consensus 194 --------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~ 259 (267)
T PRK15080 194 --------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVT 259 (267)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHH
Confidence 356789999999999999999999853 5789999999999999999999999 78899999999999
Q ss_pred hchHHHHH
Q 048693 242 AYGAAVQA 249 (539)
Q Consensus 242 A~GAal~a 249 (539)
|.||++++
T Consensus 260 a~Gaa~~~ 267 (267)
T PRK15080 260 PLGIALSC 267 (267)
T ss_pred HHHHHhhC
Confidence 99999863
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.6e-23 Score=198.73 Aligned_cols=223 Identities=23% Similarity=0.391 Sum_probs=186.3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 10 PVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
....+++.||..-++.+|+++++|++.||.+.+.+++||.|||+..++.-.. +..-||||+||||||++++.+.+-.
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~e--p~G~mvvDIGgGTTevaVISlggiv- 176 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIME--PTGSMVVDIGGGTTEVAVISLGGIV- 176 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccC--CCCCEEEEeCCCceeEEEEEecCEE-
Confidence 3446999999999999999999999999999999999999999999887765 5567999999999999999987755
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC--------eEEEEEccccC
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS--------QTTIEIDSLYE 161 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~--------~~~~~i~~~~~ 161 (539)
...+..+||+.||+.+.+++.++|+ .-+.. +.+|++|....... +.++.-..+..
T Consensus 177 ----~~~Sirv~GD~~De~Ii~yvr~~~n----l~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~ 239 (342)
T COG1077 177 ----SSSSVRVGGDKMDEAIIVYVRKKYN----LLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVT 239 (342)
T ss_pred ----EEeeEEEecchhhHHHHHHHHHHhC----eeecH---------HHHHHHHHHhcccccccCCccceeeEEeeeccc
Confidence 3556789999999999999977664 32322 56788888764321 23444445667
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CC-CC-eEEEEcCCCChHHHHHHHHHHhCCCcccccCCcc
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDK-SS-VD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPD 238 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~-i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~ 238 (539)
|..-.++++.+++.+++++.+++|.+.++..|++..... .| ++ .++|+||+|.+..+.+.|++.. +.++....+|-
T Consensus 240 GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL 318 (342)
T COG1077 240 GLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPL 318 (342)
T ss_pred CCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChH
Confidence 778889999999999999999999999999999865432 23 34 5999999999999999999998 78999999999
Q ss_pred hhhhchHHHHHHHHc
Q 048693 239 EAVAYGAAVQAAVLS 253 (539)
Q Consensus 239 ~avA~GAal~a~~~~ 253 (539)
.+||+|+......+.
T Consensus 319 ~~Va~G~G~~le~~~ 333 (342)
T COG1077 319 TCVAKGTGKALEALD 333 (342)
T ss_pred HHHHhccchhhhhhH
Confidence 999999998776664
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.86 E-value=6.1e-21 Score=197.17 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHH
Q 048693 24 NSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGE 103 (539)
Q Consensus 24 ~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~ 103 (539)
....+.+.++++.||+++..++.||.|+|++++.... ....++|+|+|+||||+++++.+...+ .+...+||+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~--~~~~~~vvDiG~gtt~i~i~~~g~~~~-----~~~i~~GG~ 229 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE--KELGVCLIDIGGGTTDIAVYTGGSIRY-----TKVIPIGGN 229 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch--hcCCEEEEEeCCCcEEEEEEECCEEEE-----EeeecchHH
Confidence 4567788899999999999999999999999864433 366799999999999999997433222 345789999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCC------CeEEEEEccccCCceeEEEEeHHHHHHH
Q 048693 104 DFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSST------SQTTIEIDSLYEGIDFSSVITRARFEEL 177 (539)
Q Consensus 104 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~e~e~~ 177 (539)
+||+.|.+.+. ..+.+||++|+.++.. .+..+.++.. +.+....+++++|+++
T Consensus 230 ~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~l~~i 288 (371)
T TIGR01174 230 HITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKELAEI 288 (371)
T ss_pred HHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHHHHHH
Confidence 99999876552 1137899999998753 2344555543 2456689999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhCCCCCCCCCe-EEEEcCCCChHHHHHHHHHHhCCCccccc------------CCcchhhhc
Q 048693 178 NMDLFRKCIKHVD-MCLRTGKTDKSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKN------------INPDEAVAY 243 (539)
Q Consensus 178 ~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~f~~~~v~~~------------~~p~~avA~ 243 (539)
+++.+++|.+.++ +.|++++.. .+++. |+|+||+|++|++++++++.| +.+++.. .+|..++|.
T Consensus 289 i~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 289 IEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHH
Confidence 9999999999997 999987765 56766 999999999999999999999 4443322 267788888
Q ss_pred hHHHH
Q 048693 244 GAAVQ 248 (539)
Q Consensus 244 GAal~ 248 (539)
|.++|
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 87764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.84 E-value=7e-20 Score=191.55 Aligned_cols=205 Identities=18% Similarity=0.233 Sum_probs=153.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEE
Q 048693 14 AVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKA 93 (539)
Q Consensus 14 vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~ 93 (539)
.+++.|. ...+.+.++++.||++...++.||.|+|.+++.... ++..++++||||||||+++++ ++.+ -
T Consensus 159 ~lv~~~~----~~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e--~~~gv~vvDiGggtTdisv~~--~G~l---~ 227 (420)
T PRK09472 159 HLITCHN----DMAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE--RELGVCVVDIGGGTMDIAVYT--GGAL---R 227 (420)
T ss_pred EEEEEch----HHHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh--hhcCeEEEEeCCCceEEEEEE--CCEE---E
Confidence 4455542 334455679999999999999999999999865543 367899999999999999997 3322 1
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCC------CeEEEEEccccCCceeEE
Q 048693 94 TAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSST------SQTTIEIDSLYEGIDFSS 167 (539)
Q Consensus 94 ~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~ 167 (539)
.....++||+++++.|+..+.-. +.+||++|.++... ....+.++..... ...
T Consensus 228 ~~~~i~~GG~~it~dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~ 286 (420)
T PRK09472 228 HTKVIPYAGNVVTSDIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPR 286 (420)
T ss_pred EEeeeechHHHHHHHHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCe
Confidence 34557899999999998665211 27899999775432 2334555543222 235
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccc-------
Q 048693 168 VITRARFEELNMDLFRKCIKHVDMCL-------RTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK------- 233 (539)
Q Consensus 168 ~itr~e~e~~~~~~~~~i~~~i~~~l-------~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~------- 233 (539)
.++++++.+++++.+++|.+.|++.+ .+.+.....++.|+|+||+|++|+|++++++.| +.+++.
T Consensus 287 ~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~ 365 (420)
T PRK09472 287 SLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNIT 365 (420)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccC
Confidence 89999999999998888888776544 555666667899999999999999999999999 454443
Q ss_pred -----cCCcchhhhchHHHHHHH
Q 048693 234 -----NINPDEAVAYGAAVQAAV 251 (539)
Q Consensus 234 -----~~~p~~avA~GAal~a~~ 251 (539)
..+|..++|.|+++|+..
T Consensus 366 g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 366 GLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred CChhhcCCcHHHHHHHHHHHhhh
Confidence 247999999999999874
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.75 E-value=1.2e-17 Score=170.45 Aligned_cols=209 Identities=27% Similarity=0.389 Sum_probs=169.6
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
++-.++|+|..+- +.|.++++.+|+++..++.+|.|+|.+.+.+.. ++.+++++||||||||+++++-+...
T Consensus 155 v~vhvit~~~~~~----~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE--kelGv~lIDiG~GTTdIai~~~G~l~-- 226 (418)
T COG0849 155 VEVHVITGPKNIL----ENLEKCVERAGLKVDNIVLEPLASALAVLTEDE--KELGVALIDIGGGTTDIAIYKNGALR-- 226 (418)
T ss_pred EEEEEEEcchHHH----HHHHHHHHHhCCCeeeEEEehhhhhhhccCccc--HhcCeEEEEeCCCcEEEEEEECCEEE--
Confidence 5567888887665 558889999999999999999999998865554 48899999999999999999843322
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC------eEEEEEccccCCce
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS------QTTIEIDSLYEGID 164 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~------~~~~~i~~~~~~~~ 164 (539)
..+..++||++++.+|+.-|...+ ..||+.|....... +..+.++.. |.+
T Consensus 227 ---~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~v--g~~ 282 (418)
T COG0849 227 ---YTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSV--GSD 282 (418)
T ss_pred ---EEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccC--CCc
Confidence 355588999999999998885443 78999999875433 334555543 333
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccc-----------
Q 048693 165 FSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK----------- 233 (539)
Q Consensus 165 ~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~----------- 233 (539)
...+++++++.+++++.+.++...+++.|++.+.+..-...|+|+||++.+|++.+..++.|+ .+++.
T Consensus 283 ~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d 361 (418)
T COG0849 283 IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTD 361 (418)
T ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchh
Confidence 477899999999999999999999999999999876667899999999999999999999994 33221
Q ss_pred -cCCcchhhhchHHHHHHHH
Q 048693 234 -NINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 234 -~~~p~~avA~GAal~a~~~ 252 (539)
..+|..+.|.|..+++...
T Consensus 362 ~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 362 IARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred hccCchhhhhHHHHHHHhhc
Confidence 2368999999999999865
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.55 E-value=9.4e-16 Score=136.31 Aligned_cols=188 Identities=23% Similarity=0.336 Sum_probs=147.7
Q ss_pred ChhhhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 1 NIAEDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 1 ~~ae~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
+.+|.+||..+++..-++|..--....+...+..+.||++++.+++||+|||.-..++.. .|+|+|||||-++
T Consensus 83 d~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-------~VVDiGGGTTGIs 155 (277)
T COG4820 83 DTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-------GVVDIGGGTTGIS 155 (277)
T ss_pred HHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-------cEEEeCCCcceeE
Confidence 467999999999999999998877777777888899999999999999999987665543 7999999999999
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
+++-++..+ ..+.+-||.+++..|+-. ++.++ ++||..|..-...
T Consensus 156 i~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~----------- 200 (277)
T COG4820 156 IVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG----------- 200 (277)
T ss_pred EEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-----------
Confidence 999655443 445778888887655433 23333 6777777653211
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
+|.--.+.|.+++..+.+++.++..+ +..++|+||++.-|.+.+.+++.| +.++..+..|...
T Consensus 201 -----------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~ 263 (277)
T COG4820 201 -----------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYM 263 (277)
T ss_pred -----------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccCCCccee
Confidence 12223456888888888888887544 668999999999999999999999 8899999999887
Q ss_pred hhchHHH
Q 048693 241 VAYGAAV 247 (539)
Q Consensus 241 vA~GAal 247 (539)
.-+|.|+
T Consensus 264 TPLgIA~ 270 (277)
T COG4820 264 TPLGIAS 270 (277)
T ss_pred chhhhhh
Confidence 7777764
No 34
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.42 E-value=4.1e-12 Score=129.34 Aligned_cols=210 Identities=18% Similarity=0.238 Sum_probs=139.8
Q ss_pred CCCcEE--EEeCCCCCHHH-HHHHHHHHHHc------------CCceeeeechhHHHHHHhccccc------cCCCceEE
Q 048693 10 PVSNAV--VTVPAYFTNSQ-RQATKDAGAMA------------GLNVLNIISEPTAAAIACGLDRK------AASEKNVL 68 (539)
Q Consensus 10 ~v~~vv--itVP~~~~~~~-r~~l~~aa~~A------------Gl~~~~li~Ep~AAa~~~~~~~~------~~~~~~vl 68 (539)
++..++ +..|..+-..+ ++.+++..... -+..+.+++||.+|.+.+..+.. ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 59998885444 46777654321 12457889999999887765432 11345789
Q ss_pred EEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 048693 69 IFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSS 148 (539)
Q Consensus 69 vvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~ 148 (539)
|||+|++|||++++. +..+ +....+....|..++.+.|.+.+..+. .+..+ +.. ++ +++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~--~~~---~i----e~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASI--TPY---ML----EKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCC--CHH---HH----HHH---HHc
Confidence 999999999999996 3332 233445578999999999988884322 22222 222 22 222 111
Q ss_pred CCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCC
Q 048693 149 TSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNG 228 (539)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~ 228 (539)
. .+.+. .+.. ..+ ++++.++++++++++...|+..+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 122 3457778888888888888877753 3478999999999986 89999999974
Q ss_pred CcccccCCcchhhhchHHHHHHHHcC
Q 048693 229 KRLCKNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 229 ~~v~~~~~p~~avA~GAal~a~~~~~ 254 (539)
+....||+.|.|+|...+|..+.+
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHhc
Confidence 466789999999999999987765
No 35
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.39 E-value=7.6e-12 Score=126.55 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=133.3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeechhHHHHHHhcccccc--CCCceEEEEEeCCceeE
Q 048693 10 PVSNAVVTVPAYFTNSQRQATKDAGAMA---------GLNVLNIISEPTAAAIACGLDRKA--ASEKNVLIFDLGGGTFD 78 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~~r~~l~~aa~~A---------Gl~~~~li~Ep~AAa~~~~~~~~~--~~~~~vlvvDiGggTtd 78 (539)
.+..+|+..|..+...+++.+++..... -++.+.+++||.+|.+.+..+... .....++|||+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4667999999999988999998876532 346689999999998887553211 24667899999999999
Q ss_pred EEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcc
Q 048693 79 VSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDS 158 (539)
Q Consensus 79 isv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~ 158 (539)
+.++. +..+ +....++...|..++.+.+.+.+.+++ +.....+.. ..+++ |...... .+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~-------~i~~~---l~~g~~~--~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDID-------RIDLA---LRTGKQP--RI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHH-------HHHHH---HHhCCce--ee--
Confidence 98774 3333 344556678899999888888886544 322101111 11211 1111000 00
Q ss_pred ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcc
Q 048693 159 LYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPD 238 (539)
Q Consensus 159 ~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~ 238 (539)
.+... .|+ ++.+..+..++++...|.+.+. ...+++.|+|+||++. .+++.|++.||...+....||+
T Consensus 240 --~gk~~--di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKPV--DIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --cceec--Cch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 11111 122 2222333444444444444432 1245889999999977 7789999999876666778999
Q ss_pred hhhhchHHHHH
Q 048693 239 EAVAYGAAVQA 249 (539)
Q Consensus 239 ~avA~GAal~a 249 (539)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999987765
No 36
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.37 E-value=6.7e-12 Score=130.03 Aligned_cols=217 Identities=19% Similarity=0.197 Sum_probs=145.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKD-AGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~-aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+++++|..++..+|+.+.+ +.+..|++.+.++++|.+|+++++. ...+|||+|+++|+++.+. ++..
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~--~G~~ 165 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVY--DGYV 165 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEE--CCEE
Confidence 4689999999999888888866 4666899999999999999999863 5679999999999998887 3332
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC-----------------eE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS-----------------QT 152 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~-----------------~~ 152 (539)
+.......++||+++|+.|.+++..+.. ...... -...++..|+.+.... ..
T Consensus 166 -~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~~-------~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (371)
T cd00012 166 -LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSSD-------EREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEK 234 (371)
T ss_pred -chhhheeccccHHHHHHHHHHHHHhcCC---Cccchh-------HHHHHHHHHHhheeecCCHHHHHHhhhccCCccce
Confidence 1222345789999999999998854321 001111 1234555555532110 00
Q ss_pred EEEEccccCCceeEEEEeHHHH--HH-HHHH-----HHHHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHHH
Q 048693 153 TIEIDSLYEGIDFSSVITRARF--EE-LNMD-----LFRKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQLL 222 (539)
Q Consensus 153 ~~~i~~~~~~~~~~~~itr~e~--e~-~~~~-----~~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l 222 (539)
.+. +.++. .+.++.+.| -+ ++.| ....|.+.|.+.++....+. .-.+.|+|+||+|++|++.++|
T Consensus 235 ~~~---lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl 309 (371)
T cd00012 235 TYE---LPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERL 309 (371)
T ss_pred eEE---CCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHH
Confidence 111 11222 334454422 22 2222 12377788888887654332 3358899999999999999999
Q ss_pred HHHhC----C-----CcccccCCcchhhhchHHHHHHHH
Q 048693 223 QEFFN----G-----KRLCKNINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 223 ~~~f~----~-----~~v~~~~~p~~avA~GAal~a~~~ 252 (539)
.+.+. . ..+....+|..++-+||.++|...
T Consensus 310 ~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~ 348 (371)
T cd00012 310 QKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLS 348 (371)
T ss_pred HHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCch
Confidence 98873 1 123455688999999999988653
No 37
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.34 E-value=5e-12 Score=131.08 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=138.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
..+++|.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++ ....+|||+|+++|+++.+. ++..
T Consensus 96 ~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~--~G~~- 165 (373)
T smart00268 96 HPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVV--DGYV- 165 (373)
T ss_pred CeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEE--CCEE-
Confidence 57899999999999999998876 5679999999999999999986 45679999999999999987 3322
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCC-------------------Ce
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSST-------------------SQ 151 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~-------------------~~ 151 (539)
+.......++||.++|+.|.+++... +..... . .-...++.+|+++... ..
T Consensus 166 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~--~---~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T smart00268 166 LPHAIKRIDIAGRDLTDYLKELLSER-----GYQFNS--S---AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLE 235 (373)
T ss_pred chhhheeccCcHHHHHHHHHHHHHhc-----CCCCCc--H---HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccc
Confidence 22223446899999999999888541 000100 0 1112344444443110 01
Q ss_pred EEEEEccccCCceeEEEEeHHHHHH-HHHHH-----HHHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHHHH
Q 048693 152 TTIEIDSLYEGIDFSSVITRARFEE-LNMDL-----FRKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQLLQ 223 (539)
Q Consensus 152 ~~~~i~~~~~~~~~~~~itr~e~e~-~~~~~-----~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~ 223 (539)
..+. +.+|..+.+...|-..-+ ++.|. ...|.+.|.+.|++...+. .-.+.|+|+||+|++|++.++|.
T Consensus 236 ~~~~---lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 236 KTYE---LPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred eeEE---CCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 1111 123333332222222222 22221 2367777878777654322 22367999999999999999998
Q ss_pred HHhC-----C--CcccccCCcchhhhchHHHHHHH
Q 048693 224 EFFN-----G--KRLCKNINPDEAVAYGAAVQAAV 251 (539)
Q Consensus 224 ~~f~-----~--~~v~~~~~p~~avA~GAal~a~~ 251 (539)
+.+. . ..+....++..++=.||+++|..
T Consensus 313 ~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 313 KELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 8772 1 12333445667777888877754
No 38
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.33 E-value=3.3e-11 Score=123.77 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCCceeeeechhHHHHHHhc-----cccccCCCc-eEEEEEeCCceeEEEEEEEecCeeeEEEecC
Q 048693 23 TNSQRQATKDAGAMAGLNVLNIISEPTAAAIACG-----LDRKAASEK-NVLIFDLGGGTFDVSLLAIEKGIFKVKATAG 96 (539)
Q Consensus 23 ~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~-----~~~~~~~~~-~vlvvDiGggTtdisv~~~~~~~~~v~~~~~ 96 (539)
.....+.+.++++.||++...+..+|.|.+-.+. +.... ... .++++|+|+++|++++++-+...+ .+
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~-~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r 214 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRT-YRLTDAALVDIGATSSTLNLLHPGRMLF-----TR 214 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcccc-ccCceEEEEEECCCcEEEEEEECCeEEE-----EE
Confidence 3556777888999999999999999999876652 22221 233 499999999999999997444333 55
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHH
Q 048693 97 DTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEE 176 (539)
Q Consensus 97 ~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~ 176 (539)
...+||.++++.|.+.+. .+ .++||+.|..-+.... .-.+
T Consensus 215 ~i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~ 254 (348)
T TIGR01175 215 EVPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL---------------------YDPE 254 (348)
T ss_pred EeechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc---------------------hhHH
Confidence 678999999998875441 11 1677887775321110 0123
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCccccc-------------------C
Q 048693 177 LNMDLFRKCIKHVDMCLRTG--KTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN-------------------I 235 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~-------------------~ 235 (539)
++++.++++...|++.++-. ......++.|+|+||+++++++.+.+++.| +.++... .
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~ 333 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVD 333 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhh
Confidence 45666666777777776532 223346899999999999999999999999 4433321 2
Q ss_pred CcchhhhchHHHHH
Q 048693 236 NPDEAVAYGAAVQA 249 (539)
Q Consensus 236 ~p~~avA~GAal~a 249 (539)
+|..++|.|+|+++
T Consensus 334 ~~~~~~a~Glalr~ 347 (348)
T TIGR01175 334 APALMTALGLALRG 347 (348)
T ss_pred hHHHHHHhhHhhcC
Confidence 35567777777653
No 39
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.26 E-value=3.1e-11 Score=123.26 Aligned_cols=180 Identities=20% Similarity=0.292 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHcCCceeeeechhHHHHHHhcccc----ccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCC
Q 048693 24 NSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDR----KAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTH 99 (539)
Q Consensus 24 ~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~----~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~ 99 (539)
...-+...++++.||++...+--++.|.+-.+.... .......++++|+|+.+|.+.++.-+...| .+...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 456677788999999999888888888665553311 112346799999999999999997433333 45578
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHHHHH
Q 048693 100 LGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNM 179 (539)
Q Consensus 100 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~ 179 (539)
+||.+++++|++.+.-.+ .+||..|..-+... +...+.+.
T Consensus 210 ~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~---------------------~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE---------------------EYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc---------------------chHHHHHH
Confidence 999999999987763333 56777776521100 23345566
Q ss_pred HHHHHHHHHHHHHHHh--CCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccc---------cC----------Ccc
Q 048693 180 DLFRKCIKHVDMCLRT--GKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK---------NI----------NPD 238 (539)
Q Consensus 180 ~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~---------~~----------~p~ 238 (539)
+.++++.+.|++.++- .......|+.|+|+||++++++|.+.|++.+ +.++.. .. .|+
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 6667777777776662 2234567999999999999999999999999 443321 11 266
Q ss_pred hhhhchHHHHH
Q 048693 239 EAVAYGAAVQA 249 (539)
Q Consensus 239 ~avA~GAal~a 249 (539)
.++|.|+|++.
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 79999999864
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.08 E-value=6.8e-10 Score=116.03 Aligned_cols=226 Identities=19% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..++++.|..++...|+.+.+.+ +..+++.+.+++++.+|+++++.. .-+|||+|.+.|.++.+. ++..
T Consensus 94 ~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVVD~G~~~t~v~pV~--dG~~ 164 (393)
T PF00022_consen 94 DHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVVDIGYSSTSVVPVV--DGYV 164 (393)
T ss_dssp GSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEEEESSS-EEEEEEE--TTEE
T ss_pred cceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------cccccccceeeeeeeeee--eccc
Confidence 356999999999999999886664 467999999999999999998643 459999999999988775 3332
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhc-CCCC------CCHHHHHHHHHHHHHHHHHc---------------C
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE-KDIS------GSPRAAQRLRKNCERAKRTL---------------S 147 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~-~~~~------~~~~~~~rL~~~~e~~K~~l---------------s 147 (539)
+.......++||+++++.|.+.+..+-.+... .... ........-...++.+|+.+ .
T Consensus 165 -~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~ 243 (393)
T PF00022_consen 165 -LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQAS 243 (393)
T ss_dssp --GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHC
T ss_pred -cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccc
Confidence 11222346799999999998888663100000 0000 00100011112233333321 1
Q ss_pred CCCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHH----------------HHHHHHHHHHHhCCCCCC--CCCeEEEE
Q 048693 148 STSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFR----------------KCIKHVDMCLRTGKTDKS--SVDDVVIV 209 (539)
Q Consensus 148 ~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLv 209 (539)
......+.++ ++. .+.+..+.+ .+.+.+++ .+.+.|.+.+++...+.. -.+.|+|+
T Consensus 244 ~~~~~~~~lP---dg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~ 317 (393)
T PF00022_consen 244 ENPEKSYELP---DGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLT 317 (393)
T ss_dssp STTTEEEE-T---TSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEE
T ss_pred cccceecccc---ccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEe
Confidence 2223334332 343 344444333 22232221 577888888887654321 24799999
Q ss_pred cCCCChHHHHHHHHHHhCC-------CcccccC-CcchhhhchHHHHHHHH
Q 048693 210 GGSARIPKVQQLLQEFFNG-------KRLCKNI-NPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 210 GG~s~~p~i~~~l~~~f~~-------~~v~~~~-~p~~avA~GAal~a~~~ 252 (539)
||+|++|++.++|.+.+.. .++.... +|..++=+||+++|...
T Consensus 318 GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 318 GGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp SGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred cccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 9999999999999887732 2444555 78888999999888643
No 41
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.07 E-value=2.1e-09 Score=112.78 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=128.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH-cCCceeeeechhHHHHHHhccccccC---CCceEEEEEeCCceeEEEEEEEecC
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAM-AGLNVLNIISEPTAAAIACGLDRKAA---SEKNVLIFDLGGGTFDVSLLAIEKG 87 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~-AGl~~~~li~Ep~AAa~~~~~~~~~~---~~~~vlvvDiGggTtdisv~~~~~~ 87 (539)
..+++|.|..++..+|+.|.+.+-. .+++.+.+..+|.+++++++...... ....-+|||+|.++|+++.+. ++
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 4589999999999999999777644 49999999999999999874332210 134569999999999998886 33
Q ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCC-----------------
Q 048693 88 IFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTS----------------- 150 (539)
Q Consensus 88 ~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~----------------- 150 (539)
.. +.......++||+++|+.|.+++.++. ..+... ..+..++.+|+.+....
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 112223468999999999999885421 111111 01133555555542110
Q ss_pred eEEEEEccccCCceeEEEEeHHHHHH---HHHHHH------HHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHH
Q 048693 151 QTTIEIDSLYEGIDFSSVITRARFEE---LNMDLF------RKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQ 219 (539)
Q Consensus 151 ~~~~~i~~~~~~~~~~~~itr~e~e~---~~~~~~------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~ 219 (539)
...+..+...++....+.+..+.|.. ++.|-+ ..+.+.|.+.|.+...+. .-.+.|+|+||+|.+|++.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 01122221122333455666655432 223321 245677777777654332 2347899999999999999
Q ss_pred HHHHHHhC
Q 048693 220 QLLQEFFN 227 (539)
Q Consensus 220 ~~l~~~f~ 227 (539)
++|++.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998873
No 42
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.03 E-value=6.6e-10 Score=112.17 Aligned_cols=175 Identities=19% Similarity=0.271 Sum_probs=103.0
Q ss_pred CceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 048693 39 LNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFK 118 (539)
Q Consensus 39 l~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 118 (539)
+..+.+++|+.||.+.+..... +...++|||+||+|+|++++. ++.-.+....+...+|-..+.+.+.+.+....
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~--~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~- 214 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLD--EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSAG- 214 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--S-
T ss_pred EeeEEEEcccHHHHHHHHHhhc--ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHhc-
Confidence 3568999999999998866633 256799999999999999986 32222333345567899998888887774310
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048693 119 RKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKT 198 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~ 198 (539)
. ..+.....++.+.... +..++ ...... -..+++.++++..++++.+.|.+.+.+
T Consensus 215 ----~--~~s~~~~~~ii~~~~~-~~~~~----------~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~--- 269 (318)
T PF06406_consen 215 ----I--DTSELQIDDIIRNRKD-KGYLR----------QVINDE-----DVIDDVSEVIEEAVEELINRILRELGD--- 269 (318)
T ss_dssp ----B--HHHHHHHHHHHHTTT--HHHHH----------HHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ----C--CCcHHHHHHHHHhhhc-cceec----------ccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 0 0011111122110000 00000 000000 012345555666666666666665542
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCCcchhhhchHH
Q 048693 199 DKSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAA 246 (539)
Q Consensus 199 ~~~~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAa 246 (539)
..+++.|+|+||++. .+.+.|++.|+ ..++....||+.|.|+|-+
T Consensus 270 -~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 -FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 346789999999965 78999999985 3567888899999999965
No 43
>PTZ00281 actin; Provisional
Probab=98.90 E-value=8.7e-09 Score=106.66 Aligned_cols=215 Identities=15% Similarity=0.183 Sum_probs=135.8
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDA-GAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~a-a~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+++|-|..++..+|+.|.+. -+..+++.+.+..++.+++++++. ..-+|||+|.+.|.++-+.-+..
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~dG~~-- 171 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIYEGYA-- 171 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEEeccc--
Confidence 35788899999999999999774 566789999999999999988752 35699999999999887653321
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCC----------------CeEE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSST----------------SQTT 153 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~----------------~~~~ 153 (539)
+.......++||.++++.|.+.+..+ +..+.. . .. ...++.+|+.+... ....
T Consensus 172 -~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 172 -LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred -chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 22233346899999999998887432 111111 0 11 12344555553210 0111
Q ss_pred EEEccccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHHHH
Q 048693 154 IEIDSLYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQLLQ 223 (539)
Q Consensus 154 ~~i~~~~~~~~~~~~itr~e~---e~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~ 223 (539)
+. +.+|.. +.+..+.| |-+++|-+ ..|.+.|.+.+.+...+. .-.+.|+|+||+|.+|++.++|+
T Consensus 241 y~---LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 241 YE---LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred EE---CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 22 223333 33444332 22233321 245666777776554332 22379999999999999999988
Q ss_pred HHhCC-------CcccccCCcchhhhchHHHHHH
Q 048693 224 EFFNG-------KRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 224 ~~f~~-------~~v~~~~~p~~avA~GAal~a~ 250 (539)
+.+.. .++..+.++..++=+|++++|.
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 87721 1234444667788888888775
No 44
>PTZ00004 actin-2; Provisional
Probab=98.89 E-value=1.5e-08 Score=105.01 Aligned_cols=215 Identities=12% Similarity=0.163 Sum_probs=136.0
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+++|-|..++..+|+.+.+.+ +..+++.+.+.+++.+++++++. ..-+|||+|.+.|+++.+. ++..
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~--dG~~ 171 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYS 171 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEE--CCEE
Confidence 456889999999999998886654 56799999999999999988752 4569999999999998776 3332
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCC---------------CC--eE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSS---------------TS--QT 152 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~---------------~~--~~ 152 (539)
+.......++||.++|+.|.+.+..+ +..+.. .... ..++..|+.+-. .. ..
T Consensus 172 -l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~~~---~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 172 -LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TAEK---EIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred -eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HHHH---HHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 22233446899999999999887432 111111 1111 223444443211 00 11
Q ss_pred EEEEccccCCceeEEEEeHHHHH---HHHHHH------HHHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHH
Q 048693 153 TIEIDSLYEGIDFSSVITRARFE---ELNMDL------FRKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQL 221 (539)
Q Consensus 153 ~~~i~~~~~~~~~~~~itr~e~e---~~~~~~------~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~ 221 (539)
.+.+ .+|..+ .+..+.|. -++.|- ...|.+.|.+.+.+...+. .-.+.|+|+||+|.+|++.++
T Consensus 241 ~y~l---Pdg~~i--~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 241 SYEL---PDGTII--TVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred EEEC---CCCCEE--EEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 2222 234333 34443321 233332 2345677777777654332 224789999999999999999
Q ss_pred HHHHhCC-------CcccccCCcchhhhchHHHHHH
Q 048693 222 LQEFFNG-------KRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 222 l~~~f~~-------~~v~~~~~p~~avA~GAal~a~ 250 (539)
|++.+.. .++....++..++=+|++++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9887721 1233344667777788888765
No 45
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=5.4e-08 Score=94.28 Aligned_cols=156 Identities=16% Similarity=0.243 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHHhc-ccccc---CCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCc
Q 048693 26 QRQATKDAGAMAGLNVLNIISEPTAAAIACG-LDRKA---ASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLG 101 (539)
Q Consensus 26 ~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~-~~~~~---~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lG 101 (539)
......+|.++||++...+--|..|.--+|. +.... .....++|+|||+..+.+.++.-++..| .+...+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCc
Confidence 3455678899999999999899998876664 11111 1123368999999999999998665554 5668899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHHHHHHH
Q 048693 102 GEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDL 181 (539)
Q Consensus 102 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~ 181 (539)
|+.+++.+...+. .+. .+++.+|....... +.-.+...++
T Consensus 225 ~~Qlt~~i~r~~~--------L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f 264 (354)
T COG4972 225 TDQLTQEIQRAYS--------LTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPF 264 (354)
T ss_pred HHHHHHHHHHHhC--------CCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHH
Confidence 9999998766552 222 56677776543221 2234556677
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 048693 182 FRKCIKHVDMCLRT--GKTDKSSVDDVVIVGGSARIPKVQQLLQEFF 226 (539)
Q Consensus 182 ~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f 226 (539)
++++.+.|++.|+- +.....+|+.|+|.||++.+.++.++|.+.+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 77777777777762 2334568999999999999999999999998
No 46
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.84 E-value=3.9e-08 Score=95.87 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=123.3
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCce-------------------eeeechhHHHHHHhccccccCCCceEEEEEeCCceeE
Q 048693 18 VPAYFTNSQRQATKDAGAMAGLNV-------------------LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFD 78 (539)
Q Consensus 18 VP~~~~~~~r~~l~~aa~~AGl~~-------------------~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtd 78 (539)
=|..|....++.++++.+.+|++. -..++|.+|-+.+.....+ ..-.|+|+||..+-
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~~v~~~~~~~~ei~~~~~g~~~~~~----~~~~vidiGgqd~k 104 (248)
T TIGR00241 29 DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGRHKVGFADKIVTEISCHGKGANYLAP----EARGVIDIGGQDSK 104 (248)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCcccccccCCceEEhhHHHHHHHHHCC----CCCEEEEecCCeeE
Confidence 345466666788888887766521 1356777776555432222 22269999999888
Q ss_pred EEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcC----CCCeEEE
Q 048693 79 VSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLS----STSQTTI 154 (539)
Q Consensus 79 isv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls----~~~~~~~ 154 (539)
+..+. ++...-...++....|+..|.+.+++.+- .++ ++++..|..-. .+....+
T Consensus 105 ~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~--------~~~-----------~e~~~~~~~~~~~~~~~~~c~v 163 (248)
T TIGR00241 105 VIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG--------VSV-----------EELGSLAEKADRKAKISSMCTV 163 (248)
T ss_pred EEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC--------CCH-----------HHHHHHHhcCCCCCCcCCEeEE
Confidence 87776 45443344566677889989888877662 111 34444433311 1112222
Q ss_pred EEcc-ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-eEEEEcCCCChHHHHHHHHHHhCCCccc
Q 048693 155 EIDS-LYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLC 232 (539)
Q Consensus 155 ~i~~-~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~-~ViLvGG~s~~p~i~~~l~~~f~~~~v~ 232 (539)
..+. .... +....+ .++++..+++.+...+.+.+.... ++ .|+|+||.++++++.+.+++.+ +.++.
T Consensus 164 f~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~ 232 (248)
T TIGR00241 164 FAESELISL--LAAGVK---KEDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVI 232 (248)
T ss_pred EechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEE
Confidence 2211 0000 001122 356667777777777777665432 44 7999999999999999999999 78899
Q ss_pred ccCCcchhhhchHHH
Q 048693 233 KNINPDEAVAYGAAV 247 (539)
Q Consensus 233 ~~~~p~~avA~GAal 247 (539)
.+.+|+.+.|+|||+
T Consensus 233 ~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 233 TPPEPQIVGAVGAAL 247 (248)
T ss_pred cCCCccHHHHHHHHh
Confidence 999999999999997
No 47
>PTZ00452 actin; Provisional
Probab=98.79 E-value=1e-07 Score=98.56 Aligned_cols=215 Identities=13% Similarity=0.145 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+++|-|..++...|+.|.+.+ +..+++.+.+.+.+.+++++++. ..-+|||+|.+.|+++.+. ++..
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~--dG~~ 170 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVF--EGHQ 170 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEE--CCEE
Confidence 367899999999999999997764 55788999999999999988752 3569999999999998776 3332
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCC----------------CeEE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSST----------------SQTT 153 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~----------------~~~~ 153 (539)
+.......++||.++++.|.+.|..+ +..+.... . . ..++.+|+.+... ....
T Consensus 171 -l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~-~---~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~ 239 (375)
T PTZ00452 171 -IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q-R---IIVKNIKERLCYTALDPQDEKRIYKESNSQDSP 239 (375)
T ss_pred -eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H-H---HHHHHHHHHhccccCcHHHHHHHhhccCCcCce
Confidence 22223336799999999988887431 11111110 0 0 1233344443211 0112
Q ss_pred EEEccccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCChHHHHHHHH
Q 048693 154 IEIDSLYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRTGKTD--KSSVDDVVIVGGSARIPKVQQLLQ 223 (539)
Q Consensus 154 ~~i~~~~~~~~~~~~itr~e~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~ 223 (539)
+.+ -+|.. +.+..+.| |-+++|-+ ..|.+.|.+.+.+...+ ..-.+.|+|+||+|.+|++.++|+
T Consensus 240 y~L---PDg~~--i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 314 (375)
T PTZ00452 240 YKL---PDGNI--LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLS 314 (375)
T ss_pred EEC---CCCCE--EEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHH
Confidence 222 23433 34554443 11223322 24566777777665433 233479999999999999999998
Q ss_pred HHhCC-----Cc--ccccCCcchhhhchHHHHHH
Q 048693 224 EFFNG-----KR--LCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 224 ~~f~~-----~~--v~~~~~p~~avA~GAal~a~ 250 (539)
+.+.. .+ +..+.++..++=+|++++|.
T Consensus 315 ~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 315 NELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 87721 12 33334555677788888775
No 48
>PTZ00466 actin-like protein; Provisional
Probab=98.75 E-value=9.2e-08 Score=98.95 Aligned_cols=217 Identities=15% Similarity=0.155 Sum_probs=135.0
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+++|-|..++..+|+.|.+.+ +..+++.+.+.+++.+++++++. ..-+|||+|.+.|.++.+. ++..
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglVVD~G~~~t~v~PV~--~G~~ 176 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGTVLDCGDGVCHCVSIY--EGYS 176 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEEEeCCCCceEEEEEE--CCEE
Confidence 356888999999999999986654 55788999999999999988753 4569999999999997776 3332
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCC-------------CCeEEEEE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSS-------------TSQTTIEI 156 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~-------------~~~~~~~i 156 (539)
+.......++||.++++.|.+.+.++ +..... .. -+..++.+|+.+.. ........
T Consensus 177 -~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y 245 (380)
T PTZ00466 177 -ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT--SA---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY 245 (380)
T ss_pred -eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHHHhCeEecCChHHHHhhccccccceeE
Confidence 22233346899999999998887431 111111 11 11234445554311 00001111
Q ss_pred ccccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHHHHHHh
Q 048693 157 DSLYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQLLQEFF 226 (539)
Q Consensus 157 ~~~~~~~~~~~~itr~e~---e~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~f 226 (539)
+ +.+|.. +.+..+.| |-+++|-+ ..+.+.|.+.+.+...+. .-.+.|+|+||+|.+|++.++|++.+
T Consensus 246 ~-LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL 322 (380)
T PTZ00466 246 I-LPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEI 322 (380)
T ss_pred E-CCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHH
Confidence 1 223433 33454444 22233321 245566666666654332 23479999999999999999998877
Q ss_pred CC-----C--cccccCCcchhhhchHHHHHH
Q 048693 227 NG-----K--RLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 227 ~~-----~--~v~~~~~p~~avA~GAal~a~ 250 (539)
.. . ++....++..++=+|++++|.
T Consensus 323 ~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 323 RKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 21 1 233344566677788888775
No 49
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.60 E-value=1.6e-06 Score=82.11 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=108.4
Q ss_pred HHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHH
Q 048693 32 DAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVN 111 (539)
Q Consensus 32 ~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 111 (539)
+.-+..|.++..-=.|+++|.+..+..... +....|+|+|||+||.+++..++.. ..+...| .|+.++..|..
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTPGt--~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~s 175 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTPGT--DKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINS 175 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCCCC--CCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHH
Confidence 334556888877789999999998766654 7788999999999999999754433 3333333 37777766544
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCC----------C-CeEEEEEccc-----------cCCce--eEE
Q 048693 112 HFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSS----------T-SQTTIEIDSL-----------YEGID--FSS 167 (539)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~----------~-~~~~~~i~~~-----------~~~~~--~~~ 167 (539)
.| +.+ + +..||.+|+.--. . .+..+.-+.+ .++.- ++.
T Consensus 176 EL--------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 33 221 1 1567777774110 0 0111100000 01111 111
Q ss_pred EEeHHHHHHHHHHHHHH-HHHHHHHHHHhCCC--CCCCCCeEEEEcCCCChHHHHHHHHHHhCCC-------cccccCCc
Q 048693 168 VITRARFEELNMDLFRK-CIKHVDMCLRTGKT--DKSSVDDVVIVGGSARIPKVQQLLQEFFNGK-------RLCKNINP 237 (539)
Q Consensus 168 ~itr~e~e~~~~~~~~~-i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~-------~v~~~~~p 237 (539)
.++-+++..+=...-++ +..-.-+.|++... +..+|+.|+|+||++.-.-|.+++.+.+... +++-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22233333222222222 12233445554432 3468899999999999999999999988532 56677789
Q ss_pred chhhhchHHHHH
Q 048693 238 DEAVAYGAAVQA 249 (539)
Q Consensus 238 ~~avA~GAal~a 249 (539)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999999743
No 50
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.57 E-value=6.4e-07 Score=88.18 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 12 SNAVVTVPAYFTNSQRQATKDA-GAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~a-a~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
--++||-|++-+.+.|+.+.+. .+...++..+++.+|+++|++.+ ....+|||+|++++.++-+. ++..-
T Consensus 107 hP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------rstalVvDiGa~~~svsPV~--DG~Vl 177 (426)
T KOG0679|consen 107 HPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------RSTALVVDIGATHTSVSPVH--DGYVL 177 (426)
T ss_pred cceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------CCceEEEEecCCCceeeeee--cceEe
Confidence 4589999998888888888665 46668889999999999999976 55679999999999998876 44443
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHH
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQE 116 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~~ 116 (539)
..+... ..+||+-++..+.+.|..+
T Consensus 178 qk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 178 QKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eeeeEe-cccchHHHHHHHHHHHhhc
Confidence 344444 6799999999999888664
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.57 E-value=3e-06 Score=93.90 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=62.0
Q ss_pred eeEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCc----------
Q 048693 164 DFSSVITRARFEELNM---DLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKR---------- 230 (539)
Q Consensus 164 ~~~~~itr~e~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~---------- 230 (539)
++.+.|+.+++.+.+. -.+...+..+-+++... +.|.++|+|--|++|+||..+++..+ .+
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y 803 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGY 803 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCe
Confidence 4567888888888764 44556666666665543 46899999999999999999999884 11
Q ss_pred ----------ccccCCcchhhhchHHHHHHHHc
Q 048693 231 ----------LCKNINPDEAVAYGAAVQAAVLS 253 (539)
Q Consensus 231 ----------v~~~~~p~~avA~GAal~a~~~~ 253 (539)
-..-.||...+|.||.+-+....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 11334899999999998765554
No 52
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.57 E-value=1.4e-08 Score=63.86 Aligned_cols=29 Identities=41% Similarity=1.109 Sum_probs=14.2
Q ss_pred cCCCCccCCCCC-CceecCCCCcccccccc
Q 048693 312 SECNGCKRPAFG-LMYRCELCNFNLHIPCM 340 (539)
Q Consensus 312 ~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca 340 (539)
+.|++|++++.+ ..|+|.+|||+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999988 88999999999999996
No 53
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.46 E-value=3.6e-08 Score=61.98 Aligned_cols=29 Identities=45% Similarity=1.032 Sum_probs=14.2
Q ss_pred ccccccCCCCCC-ceeecCCCCcccCcccc
Q 048693 377 KHCHACGRPADG-FVYHCEEKGRNLHPCCF 405 (539)
Q Consensus 377 ~~C~~C~~~~~g-~~Y~C~~C~f~lH~~C~ 405 (539)
+.|++|+++..+ +.|+|.+|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999988 99999999999999996
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.41 E-value=6.3e-06 Score=80.59 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=115.5
Q ss_pred EeCCCCCH--HHHHHHHHHHHHcCCc---e----------------eeeechhHHHHHHhccccccCCCceEEEEEeCCc
Q 048693 17 TVPAYFTN--SQRQATKDAGAMAGLN---V----------------LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGG 75 (539)
Q Consensus 17 tVP~~~~~--~~r~~l~~aa~~AGl~---~----------------~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGgg 75 (539)
.+|+.|++ ..++.+.++.+.+|+. . ...++|.+|-|.+...... +..-.|+||||-
T Consensus 59 ~~~tg~~~~~~a~~~l~~~l~~~g~~~~~v~~~~~TGyGr~~~~~a~~~v~EItaha~Ga~~~~p---p~v~tIIDIGGQ 135 (293)
T TIGR03192 59 SMRTGNNSPDSAKNALQGIMDKIGMKLEDINYVVGTGYGRVNVPFAHKAITEIACHARGANYMGG---NAVRTILDMGGQ 135 (293)
T ss_pred eecCCCCHHHHHHHHHHHHHHHcCCcccceEEEEEECcchhhcchhhcceeeHHHHHHHHHHhcC---CCCCEEEEeCCC
Confidence 46888885 5688888888888862 1 1236777776665432211 233489999996
Q ss_pred eeEEEEEEEe-cCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH-HHcCCCCeEE
Q 048693 76 TFDVSLLAIE-KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAK-RTLSSTSQTT 153 (539)
Q Consensus 76 Ttdisv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K-~~ls~~~~~~ 153 (539)
-+ -+++++ ++...-...+....-|.-.|-+.+++.| +.++ ..+. +.+.+.+ .-...+....
T Consensus 136 Ds--K~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~L--------gi~l----eel~---~~a~~~~~~p~~Iss~Ct 198 (293)
T TIGR03192 136 DC--KAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLM--------QIPI----ADLG---PRSFDVETEPEAVSSICV 198 (293)
T ss_pred ce--EEEEEcCCCcEeeeeecCcccccccHHHHHHHHHc--------CCCH----HHHH---HHHHhcCCCCCCcCCcce
Confidence 55 455543 4443333344444445555555555554 2211 1111 1121211 1112222333
Q ss_pred EEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCccc-
Q 048693 154 IEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLC- 232 (539)
Q Consensus 154 ~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~- 232 (539)
+--++..- .-+....++ ++++..+...+...+...+++.+.. +.|+|+||.++++.+++.+++.+ +.++.
T Consensus 199 VFAeSevi-~l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~ 269 (293)
T TIGR03192 199 VFAKSEAL-GLLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVD 269 (293)
T ss_pred EeccHhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCcee
Confidence 32221000 001112333 3344455555555555555443322 47899999999999999999999 66766
Q ss_pred ccCCcchhhhchHHHHHHH
Q 048693 233 KNINPDEAVAYGAAVQAAV 251 (539)
Q Consensus 233 ~~~~p~~avA~GAal~a~~ 251 (539)
.+.+|+.+.|+|||++|..
T Consensus 270 ~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 270 TKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCCCccHHHHHHHHHHHHH
Confidence 5778999999999999854
No 55
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.34 E-value=3e-07 Score=57.60 Aligned_cols=29 Identities=45% Similarity=0.883 Sum_probs=27.3
Q ss_pred ccccccCCCCCCc-eeecCCCCcccCcccc
Q 048693 377 KHCHACGRPADGF-VYHCEEKGRNLHPCCF 405 (539)
Q Consensus 377 ~~C~~C~~~~~g~-~Y~C~~C~f~lH~~C~ 405 (539)
+.|++|++.++|+ .|+|..|+|.+|+.||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 3699999999999 9999999999999997
No 56
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.34 E-value=5.3e-06 Score=86.67 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=76.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 12 SNAVVTVPAYFTNSQRQATKD-AGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~-aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
-.+++|-|..+....|+.+.+ ..+...++.+.+..++.+++++.+... ...+|+|+|.+.|+++-+--+- .
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~DG~---~ 178 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVVDGI---V 178 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeeeccc---c
Confidence 368999999999999888855 567778889999999999988876432 3679999999999998886332 2
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHH
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQE 116 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~~ 116 (539)
+........+||++++..|.+.+...
T Consensus 179 l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 179 LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccceeeecCcHHHHHHHHHHHhhc
Confidence 22233447899999999999888764
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.28 E-value=1.9e-05 Score=80.25 Aligned_cols=205 Identities=19% Similarity=0.143 Sum_probs=112.9
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCce----------------------eeeechhHHHHHHhccccccCCCceEEEEEeCCc
Q 048693 19 PAYFT-NSQRQATKDAGAMAGLNV----------------------LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGG 75 (539)
Q Consensus 19 P~~~~-~~~r~~l~~aa~~AGl~~----------------------~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGgg 75 (539)
|..+. ....+.+.++.+.+|++. -.+++|-+|-+.+..+-... .+..-.|+||||-
T Consensus 173 ~t~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~TGyGR~~i~~~~~ad~iv~EItaha~GA~~L~p~-~~~v~TIIDIGGQ 251 (404)
T TIGR03286 173 PTTKVIESAEEAVERALEEAGVSLEDVEAIGTTGYGRFTIGEHFGADLIQEELTVNSKGAVYLADK-QEGPATVIDIGGM 251 (404)
T ss_pred ecccHHHHHHHHHHHHHHHcCCCccceeEEEeeeecHHHHhhhcCCCceEEEEhhHHHHHHHhccc-CCCCcEEEEeCCC
Confidence 55443 334666677778777621 13356766655443222111 1345689999994
Q ss_pred eeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH-HHcCCCCeEEE
Q 048693 76 TFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAK-RTLSSTSQTTI 154 (539)
Q Consensus 76 Ttdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K-~~ls~~~~~~~ 154 (539)
|.-++++.++...-...++...-|+-.|-+.+++.|. .++ ..|-+.+.+.+ +...-+....+
T Consensus 252 --DsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg--------i~i-------eEl~~lA~~~~~~pv~IsS~CtV 314 (404)
T TIGR03286 252 --DNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRLG--------VDI-------TELGKLALKGMPEKVRMNSYCIV 314 (404)
T ss_pred --ceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHhC--------CCH-------HHHHHHHHhCCCCCCCccCcccc
Confidence 5556666666544444455455555555556555552 111 22222233332 11111112211
Q ss_pred EEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccc
Q 048693 155 EIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDM-CLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK 233 (539)
Q Consensus 155 ~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~ 233 (539)
.-++..- .-.....+ -++++..+...+.+.+.. +++..+.. +.|+++||.++++.+.+.+++.+ +.++..
T Consensus 315 FaeSevI-sll~~G~~---~eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iiv 385 (404)
T TIGR03286 315 FGIQDLV-TALAEGAS---PEDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVV 385 (404)
T ss_pred cccHhHH-HHHHCCCC---HHHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEE
Confidence 1110000 00001133 344445555555555543 34433222 46999999999999999999999 788999
Q ss_pred cCCcchhhhchHHHHHH
Q 048693 234 NINPDEAVAYGAAVQAA 250 (539)
Q Consensus 234 ~~~p~~avA~GAal~a~ 250 (539)
+.+|+.+.|+|||++|.
T Consensus 386 Pe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 386 PEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCcccHHHHHHHHHHhc
Confidence 99999999999999884
No 58
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.28 E-value=1.6e-05 Score=78.88 Aligned_cols=200 Identities=19% Similarity=0.218 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCce----------------------eeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 23 TNSQRQATKDAGAMAGLNV----------------------LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 23 ~~~~r~~l~~aa~~AGl~~----------------------~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
.+..+++++++.+.+|.+. -..++|-.|-+.+...-. +..=.|+||||- |.-
T Consensus 169 ~p~~~~~l~~~le~l~~~~~~I~~~~~TGYGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~----p~~dtIiDIGGQ--D~K 242 (396)
T COG1924 169 RPIAEKALKEALEELGEKLEEILGLGVTGYGRNLVGAALGADKVVVEISAHAKGARYFA----PDVDTVIDIGGQ--DSK 242 (396)
T ss_pred ChhHHHHHHHHHHHcccChheeeeeeeecccHHHhhhhhcCCcceeeeehhHHHHHHhC----CCCcEEEEecCc--cee
Confidence 3446788888888887642 223445555443332111 112289999995 566
Q ss_pred EEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEcccc
Q 048693 81 LLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLY 160 (539)
Q Consensus 81 v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~ 160 (539)
++++.++...-...+.-..-|.-.|-+.+++.| +.++ ..+-+.+++++.....+....+-.++-.
T Consensus 243 ~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L--------gv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSev 307 (396)
T COG1924 243 VIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL--------GVDV-------EELGKLALKATPPVKINSRCAVFAESEV 307 (396)
T ss_pred EEEEeCCeeeeeEeccccccccchHHHHHHHHh--------CCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHH
Confidence 666667766555555544445444555554444 2221 2222333333332222333333222100
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcch
Q 048693 161 EGIDFSSVITRARFEELNMDLFRKCIKHVDM-CLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDE 239 (539)
Q Consensus 161 ~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~ 239 (539)
++..-.-...|+++..+...+...+-. +++..... +-|+|+||.+.+..+.+++.+.+ +.+|.++.+|+.
T Consensus 308 ----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql 378 (396)
T COG1924 308 ----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQL 378 (396)
T ss_pred ----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHh-CCeeecCCccch
Confidence 000000112455666666655555444 44433322 23999999999999999999999 789999999999
Q ss_pred hhhchHHHHHHHH
Q 048693 240 AVAYGAAVQAAVL 252 (539)
Q Consensus 240 avA~GAal~a~~~ 252 (539)
.-|.|||+++...
T Consensus 379 ~GAiGAAL~a~~~ 391 (396)
T COG1924 379 MGAIGAALIAKEV 391 (396)
T ss_pred hhHHHHHHHHhhh
Confidence 9999999998654
No 59
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.23 E-value=7.9e-07 Score=55.73 Aligned_cols=29 Identities=38% Similarity=0.965 Sum_probs=27.3
Q ss_pred cCCCCccCCCCCC-ceecCCCCcccccccc
Q 048693 312 SECNGCKRPAFGL-MYRCELCNFNLHIPCM 340 (539)
Q Consensus 312 ~~C~~C~~~~~g~-~Y~C~~C~f~lH~~Ca 340 (539)
+.|++|++.+.+. +|+|+.|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4699999999999 9999999999999997
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.21 E-value=1.5e-05 Score=76.82 Aligned_cols=201 Identities=13% Similarity=0.062 Sum_probs=110.8
Q ss_pred CCCH--HHHHHHHHHHHHcCCc---ee---------------eeechhHHHHHHhccccccCCCceEEEEEeCCceeEEE
Q 048693 21 YFTN--SQRQATKDAGAMAGLN---VL---------------NIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVS 80 (539)
Q Consensus 21 ~~~~--~~r~~l~~aa~~AGl~---~~---------------~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdis 80 (539)
.|++ ..++.+.++.+.+|+. .. ..++|.+|-|.+..... ++.-.|+|+||--+-
T Consensus 37 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~TGYGR~~~~a~~~vtEIt~ha~GA~~~~----p~~~tIiDIGGQD~K-- 110 (262)
T TIGR02261 37 QRDPFKLAEDAYDDLLEEAGLAAADVAYCATTGEGESLAFHTGHFYSMTTHARGAIYLN----PEARAVLDIGALHGR-- 110 (262)
T ss_pred CCCHHHHHHHHHHHHHHHcCCChhheEEEEEECCchhhhhhcCCeeEEeHHHHHHHHHC----CCCCEEEEeCCCceE--
Confidence 5554 4678888888888872 11 33556666555543221 233489999996554
Q ss_pred EEEEe-cCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccc
Q 048693 81 LLAIE-KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSL 159 (539)
Q Consensus 81 v~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~ 159 (539)
+++++ ++...-...+....-|.-.|-+.+++.|- .++ ..|-+.+.++++...-+....+--++.
T Consensus 111 ~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~--------i~l-------eel~~~a~~~~~~~~iss~CtVFaeSe 175 (262)
T TIGR02261 111 AIRMDERGKVEAYKMTSQCASGSGQFLENIARYLG--------IAQ-------DEIGSLSQQADNPEKVSGICAVLAETD 175 (262)
T ss_pred EEEEcCCCcEeeEEecCcccccccHHHHHHHHHhC--------CCH-------HHHHHHHhcCCCCCCcCCCceEEchhh
Confidence 55553 44443333444444455555555555541 111 122222333333333333333332210
Q ss_pred cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCc----ccccC
Q 048693 160 YEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKR----LCKNI 235 (539)
Q Consensus 160 ~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~----v~~~~ 235 (539)
.- .-+....++ ++++..+...+...+..++++.+.. -+.|+|+||.++++.+.+.|++.+++.+ +..+.
T Consensus 176 vi-~~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~ 248 (262)
T TIGR02261 176 VI-NMVSRGISA---PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHP 248 (262)
T ss_pred HH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCC
Confidence 00 001112333 4444555555555555555543211 1369999999999999999999884332 55567
Q ss_pred CcchhhhchHHHHH
Q 048693 236 NPDEAVAYGAAVQA 249 (539)
Q Consensus 236 ~p~~avA~GAal~a 249 (539)
+|+.+.|+|||++|
T Consensus 249 ~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 249 DAIYAGAIGAALWG 262 (262)
T ss_pred cchHHHHHHHHHcC
Confidence 89999999999974
No 61
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=98.20 E-value=1.1e-06 Score=59.94 Aligned_cols=30 Identities=33% Similarity=1.007 Sum_probs=28.3
Q ss_pred CCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.|++|++++.|.+|+|..| ||+|+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 6999999999999999999 99999999865
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.15 E-value=1.5e-05 Score=80.06 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=103.3
Q ss_pred eeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEe-cCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhh
Q 048693 43 NIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIE-KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKT 121 (539)
Q Consensus 43 ~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 121 (539)
.+++|.+|-|.+..+.. ++.-.|+||||-.+- +++++ ++.+.-...+....-|.-.|-+.+++.|-
T Consensus 249 ~vitEItcHA~GA~~l~----P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lg------- 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY----PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMN------- 315 (432)
T ss_pred ceeeeHHHHHHHHHHHC----CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHHcC-------
Confidence 35688888776653322 234489999996655 55654 34443334444455565556555555552
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048693 122 EKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKS 201 (539)
Q Consensus 122 ~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~ 201 (539)
.++ ..|-+.+.+++.....+....+--++..- .-+...+++ ++++..+...+...+...+.+.. .
T Consensus 316 -i~l-------eEl~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~ 380 (432)
T TIGR02259 316 -MGL-------HELGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKR---EDILAGLHRAIILRAISIISRSG---G 380 (432)
T ss_pred -CCH-------HHHHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---C
Confidence 111 12222333343333333344433332100 001112333 34444555555555555555432 1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC----CCcccccCCcchhhhchHHHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN----GKRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~----~~~v~~~~~p~~avA~GAal~a 249 (539)
.-+.|+|+||.++++.+.+.|++.+. +.++..+.+|+.+.|+|||++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 12589999999999999999999994 4678889999999999999975
No 63
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.93 E-value=2e-05 Score=81.26 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCcee
Q 048693 10 PVSNAVVTVPAYFTNSQRQATKDAGAM------------AGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTF 77 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~~r~~l~~aa~~------------AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTt 77 (539)
+..-.+||..+. .++.++++++. ||++...++. |.|++.+.+.. .++..++++|||||||
T Consensus 87 e~~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT 158 (475)
T PRK10719 87 DSGAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTA 158 (475)
T ss_pred cccEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCce
Confidence 345567777654 45556666665 6666666655 99998887633 3588999999999999
Q ss_pred EEEEEEEecCeeeEEEecCCCCCcHHHHHHH
Q 048693 78 DVSLLAIEKGIFKVKATAGDTHLGGEDFDNR 108 (539)
Q Consensus 78 disv~~~~~~~~~v~~~~~~~~lGG~~id~~ 108 (539)
++++++-+... ..+..++||+.++..
T Consensus 159 ~iaVf~~G~l~-----~T~~l~vGG~~IT~D 184 (475)
T PRK10719 159 NYALFDAGKVI-----DTACLNVGGRLIETD 184 (475)
T ss_pred EEEEEECCEEE-----EEEEEecccceEEEC
Confidence 99999844322 244578999988754
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=97.87 E-value=0.00031 Score=69.20 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCCeEEEEc-CCCChHHHHHHHHHHhC--CCcccccCCcchhhhchHHHHHH
Q 048693 202 SVDDVVIVG-GSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 202 ~i~~ViLvG-G~s~~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAal~a~ 250 (539)
.++.|+++| |.+++|.+++.+.+.+. +.++..+.+|+.+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357999999 79999999999999884 56788899999999999999875
No 65
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.83 E-value=1.3e-05 Score=55.14 Aligned_cols=30 Identities=27% Similarity=0.876 Sum_probs=27.2
Q ss_pred CCCCcc-CCCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCK-RPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.|++|+ .++.|.+|+|..| ||+|+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 599999 5788999999999 99999999863
No 66
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.68 E-value=0.0041 Score=65.77 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=53.2
Q ss_pred eEEEEeHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCc-----------
Q 048693 165 FSSVITRARFEELNMDL---FRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKR----------- 230 (539)
Q Consensus 165 ~~~~itr~e~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~----------- 230 (539)
..+.|.-.++.+.+-.. +......+.++++ -.+-|.++|+|--+|+|+++..++...+ .+
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn-----~y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAIN-----HYDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHh-----hhcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 34456655555544322 2333333333333 2346899999999999999999998763 11
Q ss_pred ---------ccccCCcchhhhchHHHHHHHHc
Q 048693 231 ---------LCKNINPDEAVAYGAAVQAAVLS 253 (539)
Q Consensus 231 ---------v~~~~~p~~avA~GAal~a~~~~ 253 (539)
.-.-.||...+|.||.+-+..+.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 11233899999999998776654
No 67
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=97.63 E-value=4.6e-05 Score=53.11 Aligned_cols=31 Identities=35% Similarity=1.013 Sum_probs=28.7
Q ss_pred cCCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 312 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 312 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
+.|++|+.++.|.+|+|..| ||+|+..|...
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCc
Confidence 46999999999999999999 69999999876
No 68
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.58 E-value=5.3e-05 Score=51.89 Aligned_cols=30 Identities=30% Similarity=0.929 Sum_probs=27.2
Q ss_pred CCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.||+|.. ++.|.+|+|..| ||+|.+.|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 6999985 899999999999 89999999854
No 69
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=4.9e-06 Score=85.30 Aligned_cols=42 Identities=36% Similarity=0.717 Sum_probs=36.8
Q ss_pred cccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccccC
Q 048693 301 HYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 342 (539)
Q Consensus 301 H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 342 (539)
|-|....+..+..||.|+|.++|.. .+|+-|+...|+.||+.
T Consensus 146 H~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k 190 (888)
T KOG4236|consen 146 HTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK 190 (888)
T ss_pred ceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence 6677777788999999999998865 99999999999999854
No 70
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.52 E-value=4.3e-05 Score=50.95 Aligned_cols=30 Identities=27% Similarity=0.726 Sum_probs=27.2
Q ss_pred CCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.||+|+. |+.|.+|+|..| ||+|...|...
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 5999996 899999999999 99999999754
No 71
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.52 E-value=6.5e-05 Score=52.42 Aligned_cols=31 Identities=32% Similarity=0.844 Sum_probs=28.5
Q ss_pred cCCCCccC-CCCCCceecCCCC---cccccccccC
Q 048693 312 SECNGCKR-PAFGLMYRCELCN---FNLHIPCMFI 342 (539)
Q Consensus 312 ~~C~~C~~-~~~g~~Y~C~~C~---f~lH~~Ca~~ 342 (539)
+.|++|+. ++.|.+|+|..|. |+|...|...
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 57999998 9999999999997 9999999876
No 72
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.48 E-value=8.4e-05 Score=50.74 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.4
Q ss_pred cccccCCCCCCceeecCCC-CcccCccccCCCCcccCCCee
Q 048693 378 HCHACGRPADGFVYHCEEK-GRNLHPCCFNLPRKLPIDSVE 417 (539)
Q Consensus 378 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~C~~lp~~i~~~~h~ 417 (539)
.||.|++++.|..|+|..| +|+|+..|...+ .|..|+
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~H~~H~ 39 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---VHPEHA 39 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC---CCCCCC
Confidence 5999999999999999999 799999998765 444444
No 73
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=97.38 E-value=0.00015 Score=51.19 Aligned_cols=30 Identities=30% Similarity=0.857 Sum_probs=27.8
Q ss_pred CCCCcc-CCCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCK-RPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.|++|+ .++.|.+|+|..| ||+|...|...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 699999 7899999999999 99999999875
No 74
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=97.35 E-value=0.00015 Score=50.87 Aligned_cols=30 Identities=47% Similarity=1.108 Sum_probs=27.3
Q ss_pred CCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.|++|+. ++.|.||+|..| ||+|...|...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 5999995 789999999999 99999999865
No 75
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.33 E-value=5.2e-05 Score=75.80 Aligned_cols=96 Identities=23% Similarity=0.550 Sum_probs=69.1
Q ss_pred ccccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccccCC--------CCCCCCCCCCCCceeEeccCCCCCC
Q 048693 300 AHYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCMFIY--------RKPTAKHEFFGNFTFKFLPSLGACS 368 (539)
Q Consensus 300 ~H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~p--------~~~~~~h~~~~~h~l~l~~~~~~~~ 368 (539)
.|.+.-.-...+..|..|+..++|.- |+|+.|-|.+|..|-..- ..+..+.| -.+|.+....-..+
T Consensus 45 ~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdp-r~kHkf~~~tYssP-- 121 (683)
T KOG0696|consen 45 SHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDP-RSKHKFKIHTYSSP-- 121 (683)
T ss_pred cceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCc-ccccceeeeecCCC--
Confidence 35554444567889999999998754 999999999999995321 11223444 33467766554333
Q ss_pred CCcCcCCcccccccCCCCCCce---eecCCCCcccCccccC
Q 048693 369 TKDCIDCNKHCHACGRPADGFV---YHCEEKGRNLHPCCFN 406 (539)
Q Consensus 369 ~~~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~C~~ 406 (539)
.+||-||.-..|.. ..|..|+..+|..|..
T Consensus 122 --------TFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~ 154 (683)
T KOG0696|consen 122 --------TFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVE 154 (683)
T ss_pred --------chhhhHHHHHHHHHhcccccccccchHHHHHhh
Confidence 78999998765553 7899999999999974
No 76
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.31 E-value=0.00067 Score=68.73 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=61.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH-cCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAM-AGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~-AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
.-+++|-|..|....|+.|.+..-. -+.+.+.+ ...|..++++ ...-+|+|+|.|-|++.-+- ++ +.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g-------~ttG~VvD~G~gvt~~vPI~--eG-~~ 167 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASG-------RTTGLVVDSGDGVTHVVPIY--EG-YA 167 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcC-------CeeEEEEEcCCCceeeeecc--cc-cc
Confidence 5799999999999999999876433 34455444 2244333333 23459999999977665443 22 22
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHH
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQ 115 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~ 115 (539)
+...-....+||+++++-|...|.+
T Consensus 168 lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 168 LPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred cchhhheecccchhhHHHHHHHHHh
Confidence 3333456889999999977777755
No 77
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.26 E-value=0.003 Score=59.52 Aligned_cols=225 Identities=16% Similarity=0.196 Sum_probs=128.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDA-GAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~a-a~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
-..+.+|-|..-....|+.|.+. .+..|+.-+.+.-...-+.++-++.. =+|+|-|.|.|-+.-+.- + +
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t-------GvVvDSGDGVTHi~PVye--~-~ 170 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT-------GVVVDSGDGVTHIVPVYE--G-F 170 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc-------eEEEecCCCeeEEeeeec--c-e
Confidence 34789999999999999998665 56789988887666555555544433 289999999998876541 1 1
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHc-------------CCCCeEEEEE
Q 048693 90 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTL-------------SSTSQTTIEI 156 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~l-------------s~~~~~~~~i 156 (539)
......+...+.|+++++-|.+++..+ .+...-..+- +..+.+|+.| +..++.-+.-
T Consensus 171 ~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~ 240 (389)
T KOG0677|consen 171 VLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVES 240 (389)
T ss_pred ehhhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence 122234557889999999999988643 1111111111 2333444433 1122221111
Q ss_pred ccccCCceeEEEEeHHHH-HHHHHHHH-----HHHHHHHHHHHHhCCCCC--CCCCeEEEEcCCCChHHHHHHHHHHhC-
Q 048693 157 DSLYEGIDFSSVITRARF-EELNMDLF-----RKCIKHVDMCLRTGKTDK--SSVDDVVIVGGSARIPKVQQLLQEFFN- 227 (539)
Q Consensus 157 ~~~~~~~~~~~~itr~e~-e~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~f~- 227 (539)
-.+.+|.-+.+.-.|-|- |.+++|.+ ..+.+.+-..++.+..+. .--++|+|.||++.-|++...+++.+.
T Consensus 241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkq 320 (389)
T KOG0677|consen 241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQ 320 (389)
T ss_pred eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHH
Confidence 123344444332222111 22333322 233444555555544332 122799999999999998887776542
Q ss_pred --------C-------CcccccCCc--chhhhchHHHHHHHHcCC
Q 048693 228 --------G-------KRLCKNINP--DEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 228 --------~-------~~v~~~~~p--~~avA~GAal~a~~~~~~ 255 (539)
+ .+++....| ..-|-+|.|..|..+...
T Consensus 321 lyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 321 LYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred HHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCC
Confidence 1 123333222 356778888888877653
No 78
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.23 E-value=0.00039 Score=49.09 Aligned_cols=46 Identities=22% Similarity=0.626 Sum_probs=33.3
Q ss_pred cCCCCccCCCCC-CceecCCC-CcccccccccCCCCCCCCCCCCCCceeEe
Q 048693 312 SECNGCKRPAFG-LMYRCELC-NFNLHIPCMFIYRKPTAKHEFFGNFTFKF 360 (539)
Q Consensus 312 ~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l 360 (539)
+.|++|...+.+ .+|+|..| ||+|...|..... ..-.|.. .|++.+
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~-~~~~H~~--~H~~~~ 48 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGA-EIGKHRN--DHNYRV 48 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcC-CCCCCCC--CCCeEe
Confidence 469999998754 89999999 9999999987632 1224443 355543
No 79
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.16 E-value=0.00072 Score=63.34 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHH
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTD-KSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 251 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~ 251 (539)
.+++.-+++.+.-.++..++..... ...++.|+++||.++++.+.+++.+.+ +.+|....+ .++.+.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 3344444444444444444432111 234899999999999999999999999 688877744 88999999999874
No 80
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.09 E-value=0.0019 Score=66.38 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=72.3
Q ss_pred cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeE
Q 048693 13 NAVVTVPAYFTNSQRQAT-KDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKV 91 (539)
Q Consensus 13 ~vvitVP~~~~~~~r~~l-~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v 91 (539)
.+|+-||-.|.....+.+ +-.....||..+.++.|+.||.++.|+. ...|||||+-+|.|+-++ +|+. .
T Consensus 229 ~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVE--dGvs-~ 298 (618)
T KOG0797|consen 229 HAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVE--DGVS-L 298 (618)
T ss_pred eEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEee--cCcc-c
Confidence 689999999998876666 4556778999999999999999888765 349999999999998887 3321 2
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHH
Q 048693 92 KATAGDTHLGGEDFDNRMVNHFIQ 115 (539)
Q Consensus 92 ~~~~~~~~lGG~~id~~l~~~l~~ 115 (539)
..+.-....||+||++.|+-++..
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHHh
Confidence 222333678999999988766654
No 81
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.08 E-value=0.00041 Score=48.04 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=27.4
Q ss_pred CCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.||+|...+.+.+|+|-.| ||+|...|...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999888999999999 99999999765
No 82
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=97.05 E-value=0.00041 Score=48.85 Aligned_cols=30 Identities=23% Similarity=0.924 Sum_probs=27.9
Q ss_pred CCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 313 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.|++|.. ++.|.+|+|..| ||+|...|...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5999998 899999999999 99999999865
No 83
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=96.98 E-value=0.00056 Score=49.26 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=32.1
Q ss_pred cccccccCCCCcCCCCccCCCCC---CceecCCCCcccccccccC
Q 048693 301 HYLQLKNHKTLSECNGCKRPAFG---LMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 301 H~L~l~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 342 (539)
|.++..+...+..|+.|++.++| ..|+|+.|++..|..|...
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 44555666788899999999954 3499999999999999865
No 84
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.93 E-value=0.00062 Score=47.55 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=29.6
Q ss_pred ccccccCC-CCCCceeecCCCC---cccCccccCCCC
Q 048693 377 KHCHACGR-PADGFVYHCEEKG---RNLHPCCFNLPR 409 (539)
Q Consensus 377 ~~C~~C~~-~~~g~~Y~C~~C~---f~lH~~C~~lp~ 409 (539)
+.||.|+. ++.|..|+|..|. |+|...|...+.
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 36999998 8999999999998 999999987665
No 85
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.87 E-value=0.00033 Score=48.70 Aligned_cols=32 Identities=31% Similarity=0.895 Sum_probs=25.9
Q ss_pred CcCCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 311 LSECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 311 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.+.|++|+. ++.|.+|+|..| ||+|...|...
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 567999998 889999999999 89999999854
No 86
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.84 E-value=0.049 Score=53.19 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeeechhHHHHHH-hcccccc---CCCceEEEEEeCCceeEEEEEEEe
Q 048693 11 VSNAVVTVPAYFTNSQRQAT-KDAGAMAGLNVLNIISEPTAAAIA-CGLDRKA---ASEKNVLIFDLGGGTFDVSLLAIE 85 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l-~~aa~~AGl~~~~li~Ep~AAa~~-~~~~~~~---~~~~~vlvvDiGggTtdisv~~~~ 85 (539)
-..+|+|=|.+--+.-.+.+ .-.-+..+++.+.=.+-.+-+|.. |..+... ..+...+|+|.|.+-|-+.-+-.+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g 172 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKG 172 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcC
Confidence 45789999876555444444 444556677654333222222222 2222111 235589999999998877655433
Q ss_pred cCeeeEEEecCCCCCcHHHHHHHHHHHHH
Q 048693 86 KGIFKVKATAGDTHLGGEDFDNRMVNHFI 114 (539)
Q Consensus 86 ~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 114 (539)
... ..+.. ..++||..++..|.+++.
T Consensus 173 ~~~--~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 173 IPY--YQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred cch--hhceE-EeecchHHHHHHHHHHhh
Confidence 222 12222 378999999999988885
No 87
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=96.82 E-value=0.00074 Score=45.51 Aligned_cols=30 Identities=30% Similarity=0.851 Sum_probs=25.9
Q ss_pred cCCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 312 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 312 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
+.|++|.. +.|.+|+|..| ||+|...|...
T Consensus 1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 46999988 45699999999 99999999854
No 88
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.81 E-value=0.051 Score=53.38 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=109.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCC------------------c---eee--eechhHHHHHHh--ccccc-cCCCce
Q 048693 13 NAVVTVPAYFTNSQRQATKDAGAMAGL------------------N---VLN--IISEPTAAAIAC--GLDRK-AASEKN 66 (539)
Q Consensus 13 ~vvitVP~~~~~~~r~~l~~aa~~AGl------------------~---~~~--li~Ep~AAa~~~--~~~~~-~~~~~~ 66 (539)
......|...-+.-.+.+++.....+. . .+. -++|-.|...+. .+... ...-..
T Consensus 23 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p 102 (279)
T TIGR00555 23 RKFKTFETTNIDKFIEWLKNQIHRHSRITTLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPKDDIYP 102 (279)
T ss_pred EEEEEeecccHHHHHHHHHHHHHhhcCceEEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 445667776666666666665542211 1 012 234666655443 32222 123467
Q ss_pred EEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHc
Q 048693 67 VLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTL 146 (539)
Q Consensus 67 vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~l 146 (539)
++++++|.| +++++++...++.+ .+ ..+||-.|- -|..++.. .....+|.+.|++..
T Consensus 103 ~llvnIGsG---vSi~~v~~~~~~Rv--~G-t~iGGGTf~-GL~~LL~~-------------~~~~~el~~lA~~G~--- 159 (279)
T TIGR00555 103 YLLVNIGTG---TSILYVDGDNYERV--GG-TSLGGGTFL-GLGKLLTG-------------IQTFDELLEMAQHGD--- 159 (279)
T ss_pred eEEEEecCC---eEEEEEcCccEEEE--cC-ccccHHHHH-HHHHHHcC-------------CCCHHHHHHHHHcCC---
Confidence 899999877 45666665544333 33 568887776 67777641 011223333332211
Q ss_pred CCCCeEEEEEccccC-----------------Cce----eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCe
Q 048693 147 SSTSQTTIEIDSLYE-----------------GID----FSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDD 205 (539)
Q Consensus 147 s~~~~~~~~i~~~~~-----------------~~~----~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 205 (539)
+......+..++. |.- ..-.+++ |++...++..+.+.|-.+-. .......++.
T Consensus 160 --~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~---eDiAaSLl~mV~~nIg~lA~-~~a~~~~~~~ 233 (279)
T TIGR00555 160 --RTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSP---EDIAASLLGLIGNNIGQIAY-LCALRYNIDR 233 (279)
T ss_pred --CcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCH---HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCe
Confidence 1111122222221 100 0112333 34444444444443332221 1112245789
Q ss_pred EEEEcC-CCChHHHHHHHHHHhC--CCcccccCCcchhhhchHHH
Q 048693 206 VVIVGG-SARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 206 ViLvGG-~s~~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAal 247 (539)
|+++|| ....|.+++.+...+. +.++..+.|+...+|+||++
T Consensus 234 IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 234 IVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 999999 6789999999987762 46788888999999999986
No 89
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.79 E-value=0.00078 Score=46.37 Aligned_cols=32 Identities=28% Similarity=0.888 Sum_probs=29.1
Q ss_pred CcCCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 311 LSECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 311 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
.+.|+.|+.++.|.+|+|..| ||+|...|...
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 457999999999999999999 99999999754
No 90
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.71 E-value=0.0013 Score=45.34 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=26.8
Q ss_pred cccccC-CCCCCceeecCCC-CcccCccccCC
Q 048693 378 HCHACG-RPADGFVYHCEEK-GRNLHPCCFNL 407 (539)
Q Consensus 378 ~C~~C~-~~~~g~~Y~C~~C-~f~lH~~C~~l 407 (539)
.||.|+ .++.|..|+|..| +|+|+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 599999 5788999999999 69999999873
No 91
>PRK15027 xylulokinase; Provisional
Probab=96.67 E-value=0.0049 Score=66.31 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=58.1
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchH
Q 048693 169 ITRARFEELNMDLFRKCIKHVDM---CLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGA 245 (539)
Q Consensus 169 itr~e~e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 245 (539)
-++.+|...+ ++.+.-.++. .+++.+ ..++.|+++||+++++...+++.+.+ +.+|....+.+++.++||
T Consensus 356 ~~~~~l~rAv---lEgia~~~~~~~~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~Ga 428 (484)
T PRK15027 356 HGPNELARAV---LEGVGYALADGMDVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGA 428 (484)
T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHH
Confidence 3566655443 3333333333 334333 34789999999999999999999999 788866667777889999
Q ss_pred HHHHHHHcCC
Q 048693 246 AVQAAVLSGN 255 (539)
Q Consensus 246 al~a~~~~~~ 255 (539)
|+.|+.-.|.
T Consensus 429 A~lA~~~~G~ 438 (484)
T PRK15027 429 ARLAQIAANP 438 (484)
T ss_pred HHHHHHhcCC
Confidence 9999988763
No 92
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.58 E-value=0.035 Score=58.26 Aligned_cols=219 Identities=20% Similarity=0.174 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCceeeee----chhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEec-------CeeeEEEecCC
Q 048693 29 ATKDAGAMAGLNVLNII----SEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEK-------GIFKVKATAGD 97 (539)
Q Consensus 29 ~l~~aa~~AGl~~~~li----~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~-------~~~~v~~~~~~ 97 (539)
...++|+..||..-..| -+.-|.+++.+... .+-|++=+|-+|..+.+-+... .....+....-
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~-----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ-----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred cCHHHHHHhCCCCCcEEeccceeccccccccccCC-----CCeEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 34567777777532222 23333333333221 2334555777777776655331 12222222222
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhhc---CCCCCCH----HHHHHHHHHHHHHHHHcCCCCeEEEEEcccc------CCce
Q 048693 98 THLGGEDFDNRMVNHFIQEFKRKTE---KDISGSP----RAAQRLRKNCERAKRTLSSTSQTTIEIDSLY------EGID 164 (539)
Q Consensus 98 ~~lGG~~id~~l~~~l~~~~~~~~~---~~~~~~~----~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~------~~~~ 164 (539)
..-||+.-.-+|.+||.+...--.. ....... ....++....++++...+.... -+.++-+. .+..
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~ 386 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPR 386 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCcc
Confidence 3447888888888888765210000 0000011 2233343344444444322211 11122111 1111
Q ss_pred eE-------EEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCc
Q 048693 165 FS-------SVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINP 237 (539)
Q Consensus 165 ~~-------~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p 237 (539)
+. +.-+.+.+..+..-.++.+.--.+..++......-.|+.|+.+||..++|.+.+.+.+.. |.++..+ ..
T Consensus 387 l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s 464 (544)
T COG1069 387 LKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-AS 464 (544)
T ss_pred ceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cc
Confidence 11 122333344555555555543333333332223445899999999999999999999999 6777666 66
Q ss_pred chhhhchHHHHHHHHcCC
Q 048693 238 DEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 238 ~~avA~GAal~a~~~~~~ 255 (539)
++++++|+|+.++.-.|.
T Consensus 465 ~~a~llGsAm~~avAag~ 482 (544)
T COG1069 465 DQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred cchhhhHHHHHHHHHhcc
Confidence 889999999999988864
No 93
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.57 E-value=0.0067 Score=66.13 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=63.3
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHH
Q 048693 169 ITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 248 (539)
Q Consensus 169 itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~ 248 (539)
-+|..+..++.-+++.|.=.++..++........++.|.++||+++++...+++.+.+ +.+|....++ ++.++|||+.
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHH
Confidence 3565666666667776665555555433212235789999999999999999999999 7888777554 5789999999
Q ss_pred HHHHcCC
Q 048693 249 AAVLSGN 255 (539)
Q Consensus 249 a~~~~~~ 255 (539)
|+.-.|.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9887763
No 94
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.49 E-value=0.0024 Score=44.41 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=30.1
Q ss_pred ccccccCCCCCCceeecCCCC-cccCccccCCCC
Q 048693 377 KHCHACGRPADGFVYHCEEKG-RNLHPCCFNLPR 409 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~-f~lH~~C~~lp~ 409 (539)
+.||.|+.++.|..|+|..|. |+|+..|..-+.
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 369999999999999999998 999999988776
No 95
>PLN02669 xylulokinase
Probab=96.43 E-value=0.011 Score=64.66 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHH
Q 048693 178 NMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 251 (539)
Q Consensus 178 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~ 251 (539)
+..+++.+.=.++..++..... ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 3344444444444444433322 45789999999999999999999999 6788777555 6789999999976
No 96
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.42 E-value=0.0038 Score=53.42 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=28.3
Q ss_pred EEEEEeCCceeEEEEEEEe-cCeeeEEEecCC--CCCcHHHHH--HHHHHHHHHH
Q 048693 67 VLIFDLGGGTFDVSLLAIE-KGIFKVKATAGD--THLGGEDFD--NRMVNHFIQE 116 (539)
Q Consensus 67 vlvvDiGggTtdisv~~~~-~~~~~v~~~~~~--~~lGG~~id--~~l~~~l~~~ 116 (539)
++++|+|++++.+.+++.+ .+.++++..... ..+=+..|+ +.+.+-+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a 55 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIA 55 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHH
Confidence 5789999999999999974 334444433211 111177777 6666666433
No 97
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=96.27 E-value=0.0032 Score=61.94 Aligned_cols=32 Identities=25% Similarity=0.745 Sum_probs=29.0
Q ss_pred CcCCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 311 LSECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 311 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
...||.|+. +|.|.+|+|.+| ||||++.|-..
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 467999999 889999999999 99999999754
No 98
>PRK04123 ribulokinase; Provisional
Probab=96.22 E-value=0.012 Score=64.35 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=44.6
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcC
Q 048693 202 SVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 202 ~i~~ViLvGG~-s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~ 254 (539)
.++.|.++||+ ++++.+.+++.+.| +.+|... ++.++.++|||+.|+.-.|
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 47899999999 99999999999999 7888666 4567889999999988776
No 99
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.19 E-value=0.014 Score=63.12 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++.+.+++.+.+ +.+|.... ..++.++|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcCc
Confidence 4789999999999999999999999 78887664 4568899999999888773
No 100
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.15 E-value=0.016 Score=62.33 Aligned_cols=52 Identities=31% Similarity=0.508 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++.+.+++.+.+ +.++.... ..++.++|||+.|+.-.|.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 78887764 5668899999999988763
No 101
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.14 E-value=0.015 Score=62.96 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++.+.+++.+.| +.+|.... ..++.++|||+.|+.-.|.
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcCc
Confidence 3789999999999999999999999 78887765 4557899999999988773
No 102
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.09 E-value=0.014 Score=62.89 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++...+++.+.+ +.+|.... ..++.|+|||+.|+.-.|.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~-~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPK-VTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEecC-CCcchHHHHHHHHHhhcCc
Confidence 4789999999999999999999999 78887654 4567899999999888763
No 103
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.98 E-value=0.018 Score=61.57 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++...+++.+.+ +.+|....++ ++.++|||+.|+.-.|.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcCc
Confidence 4789999999999999999999999 7888777554 67899999999988763
No 104
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.97 E-value=0.02 Score=62.37 Aligned_cols=52 Identities=31% Similarity=0.449 Sum_probs=45.5
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~-s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|+++||+ ++++.+.+++.+.| +.+|....+ .++.++|||+.|+.-.|.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcCC
Confidence 57899999999 99999999999999 788877755 467899999999988773
No 105
>PRK10331 L-fuculokinase; Provisional
Probab=95.97 E-value=0.019 Score=61.51 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=56.2
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHH
Q 048693 169 ITRARFEELNMDLFRKCIKHVDMCLRTGK-TDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 169 itr~e~e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal 247 (539)
-+|.+|.. -+++.|.-.++..++... .....++.|.++||+++++...+++.+.+ +.+|.... ..++.++|||+
T Consensus 358 ~~~~~l~r---AvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 358 TTRGHFYR---AALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred cCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHH
Confidence 35555443 344444433333333221 11235789999999999999999999999 78887664 45688999999
Q ss_pred HHHHHcC
Q 048693 248 QAAVLSG 254 (539)
Q Consensus 248 ~a~~~~~ 254 (539)
.|+.-.|
T Consensus 433 la~~~~G 439 (470)
T PRK10331 433 FGWYGVG 439 (470)
T ss_pred HHHHhcC
Confidence 9988776
No 106
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=95.96 E-value=0.006 Score=43.83 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=24.8
Q ss_pred ccccccCCCC---CCceeecCCCCcccCccccCC
Q 048693 377 KHCHACGRPA---DGFVYHCEEKGRNLHPCCFNL 407 (539)
Q Consensus 377 ~~C~~C~~~~---~g~~Y~C~~C~f~lH~~C~~l 407 (539)
..|++|++.+ ....|+|..|++.+|..|...
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 7899999987 344699999999999999854
No 107
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.93 E-value=0.3 Score=48.10 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHH----hCCCcccccCCcchhhhchHHHHH
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEF----FNGKRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~----f~~~~v~~~~~p~~avA~GAal~a 249 (539)
.++++...+.+.+.+...+++...... .|+|+||..+...+++.+++. .+..++....+|....+.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 445566667777777777776543321 299999999997777766443 334456677789999999999986
No 108
>PLN02295 glycerol kinase
Probab=95.91 E-value=0.033 Score=60.32 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++.+.|++.+.+ +.+|... +..++.|+|||+.|+.-.|.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHHHhhcCc
Confidence 5789999999999999999999999 7888665 44578899999999888763
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=95.87 E-value=0.0049 Score=42.38 Aligned_cols=32 Identities=34% Similarity=0.807 Sum_probs=28.5
Q ss_pred cccccccCCCCCCceeecCCC-CcccCccccCC
Q 048693 376 NKHCHACGRPADGFVYHCEEK-GRNLHPCCFNL 407 (539)
Q Consensus 376 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~C~~l 407 (539)
...|+.|+.++.|..|+|..| +|+|.+.|-.-
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 378999999999999999999 59999999654
No 110
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.83 E-value=0.023 Score=61.45 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++...+++.+.+ +.+|....++ ++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 5789999999999999999999999 7888777544 68899999999888763
No 111
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.78 E-value=0.011 Score=41.74 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=31.6
Q ss_pred cccccCCCC-CCceeecCCC-CcccCccccCCCCcc-cC-CCeeEE
Q 048693 378 HCHACGRPA-DGFVYHCEEK-GRNLHPCCFNLPRKL-PI-DSVEFE 419 (539)
Q Consensus 378 ~C~~C~~~~-~g~~Y~C~~C-~f~lH~~C~~lp~~i-~~-~~h~~~ 419 (539)
.||.|++.. .|..|+|..| +|+|...|..-.... .| ..|+..
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~ 47 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYR 47 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeE
Confidence 699999876 4599999999 799999998766543 23 255543
No 112
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=95.75 E-value=0.0057 Score=43.20 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=32.0
Q ss_pred cccccCCCCcCCCCccCCCCC---CceecCCCCcccccccccC
Q 048693 303 LQLKNHKTLSECNGCKRPAFG---LMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 303 L~l~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 342 (539)
+.......+..|+.|.+.+++ ..|+|+.|++..|..|+..
T Consensus 3 f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 3 FVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred cEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 333344467789999999976 5699999999999999864
No 113
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=95.66 E-value=0.0055 Score=41.06 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=26.1
Q ss_pred cccccCC-CCCCceeecCCCC-cccCccccCC
Q 048693 378 HCHACGR-PADGFVYHCEEKG-RNLHPCCFNL 407 (539)
Q Consensus 378 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~l 407 (539)
.||.||. ++.|..|+|..|. |||...|-.-
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 5999997 8899999999986 9999888643
No 114
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.036 Score=58.44 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHH
Q 048693 174 FEELNMDLFRKCIKHVDMCLRTGKTDK-SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 174 ~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~ 252 (539)
.+.+....++.|.-.++..|+...... ..++.+.+.||.|+++.+.+.+.+.+ |.++..+.+.+. ++.|||+.|+..
T Consensus 385 ~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a 462 (516)
T KOG2517|consen 385 KEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAA 462 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhh
Confidence 334444555555555555555433333 46888999999999999999999999 689988888777 999999999998
Q ss_pred cCC
Q 048693 253 SGN 255 (539)
Q Consensus 253 ~~~ 255 (539)
++.
T Consensus 463 ~~~ 465 (516)
T KOG2517|consen 463 SGK 465 (516)
T ss_pred cCC
Confidence 875
No 115
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.60 E-value=0.031 Score=59.63 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~ 254 (539)
.++.|.++||+++++...+++.+.+ +.+|... +.++.|+|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 7888543 367889999999988776
No 116
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.55 E-value=0.0055 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.464 Sum_probs=29.4
Q ss_pred ccccccCCCCCCceeecCCC-CcccCccccCCCCcccCCCeeEEE
Q 048693 377 KHCHACGRPADGFVYHCEEK-GRNLHPCCFNLPRKLPIDSVEFEL 420 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~C~~lp~~i~~~~h~~~l 420 (539)
+.||.|.. +.|..|+|..| +|||...|-.- ..|+|.|
T Consensus 1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~------~~H~H~~ 38 (41)
T cd02337 1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNT------KNHPHKM 38 (41)
T ss_pred CcCCCCCC-cCCCceECCCCcchhhHHHHhCC------CCCCccc
Confidence 36999988 55799999999 59999999765 3466665
No 117
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.49 E-value=0.035 Score=60.28 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++...+++.+.+ +.+|....++ ++.++|||+.|+.-.|.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 7888777544 57799999999888773
No 118
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.49 E-value=0.027 Score=56.17 Aligned_cols=66 Identities=21% Similarity=0.117 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHH
Q 048693 179 MDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 179 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal 247 (539)
+-..+++.+.|++.....+....+. .++.+||.+ |.+...+.+.++=..+..+..+.-+.|.|+++
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344555555555543334332222 345556665 67888888888333455555568888999885
No 119
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=95.43 E-value=0.0073 Score=42.35 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=30.9
Q ss_pred ccCCCCcCCCCccCCCCCC--ceecCCCCcccccccccC
Q 048693 306 KNHKTLSECNGCKRPAFGL--MYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 306 ~~~~~~~~C~~C~~~~~g~--~Y~C~~C~f~lH~~Ca~~ 342 (539)
.....+..|+.|.+.+++. .|+|+.|++..|..|+..
T Consensus 6 ~~~~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 6 RTFKKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred eccCCCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 3335677899999999773 699999999999999864
No 120
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.25 E-value=0.047 Score=58.46 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
.++.|.++||+++++...+++.+.+ +.+|.... .++.++|||+.|+.-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999 78885543 478899999999888773
No 121
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=95.19 E-value=0.014 Score=57.12 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=34.2
Q ss_pred CCcCCCCccCCC-CCCceecCCC-CcccccccccCCCCCCCCCCCCCCceeEec
Q 048693 310 TLSECNGCKRPA-FGLMYRCELC-NFNLHIPCMFIYRKPTAKHEFFGNFTFKFL 361 (539)
Q Consensus 310 ~~~~C~~C~~~~-~g~~Y~C~~C-~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~ 361 (539)
....||||++.- .+.+|+|-.| ||||+..|...- ..+-.|+ ++||...+
T Consensus 7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~-~tt~~H~--~dHPmqci 57 (381)
T KOG1280|consen 7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENG-ATTPIHD--EDHPMQCI 57 (381)
T ss_pred CCceeccccccceeeeeeEeeeecchhHHHHHhhcC-CCCcccC--CCCceeEE
Confidence 355799999986 5667999999 999999997652 1222344 34665543
No 122
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.093 Score=53.77 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=46.8
Q ss_pred hCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHH
Q 048693 195 TGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 195 ~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~ 252 (539)
..+.+..+...|+++||.|+...|-+.|.+.| +.+|..- +..++.+.|+|++|+.-
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHHH
Confidence 34555567789999999999999999999999 7777766 77788999999997544
No 123
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.93 E-value=0.036 Score=57.70 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=51.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeeee---chhHHHHHHhcccccc-CCCceEEEEEeCCceeEEEEEEEecCee
Q 048693 14 AVVTVPAYFTNSQRQATKDAGAMAGLNVLNII---SEPTAAAIACGLDRKA-ASEKNVLIFDLGGGTFDVSLLAIEKGIF 89 (539)
Q Consensus 14 vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li---~Ep~AAa~~~~~~~~~-~~~~~vlvvDiGggTtdisv~~~~~~~~ 89 (539)
|+||==+--.+++|+.+...+..||==++... .|+.-|+...+..... .....++=+||||||+.+++++.++
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~--- 164 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE--- 164 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE---
Confidence 44554444455666666666666664222221 3555454444433322 3456778899999999999998443
Q ss_pred eEEEecCCCCCcHHHH
Q 048693 90 KVKATAGDTHLGGEDF 105 (539)
Q Consensus 90 ~v~~~~~~~~lGG~~i 105 (539)
++++ ...++||+.|
T Consensus 165 -v~~T-~cl~IGGRLi 178 (473)
T PF06277_consen 165 -VIDT-ACLDIGGRLI 178 (473)
T ss_pred -EEEE-EEEeeccEEE
Confidence 2333 3367888755
No 124
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.93 E-value=0.024 Score=38.97 Aligned_cols=30 Identities=23% Similarity=0.688 Sum_probs=27.1
Q ss_pred cccccCC-CCCCceeecCCCC-cccCccccCC
Q 048693 378 HCHACGR-PADGFVYHCEEKG-RNLHPCCFNL 407 (539)
Q Consensus 378 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~l 407 (539)
.||.|+. ++.|..|+|..|. |+|...|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5999986 7899999999997 9999999765
No 125
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=94.79 E-value=0.0084 Score=41.65 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=24.5
Q ss_pred cccccccCC-CCCCceeecCCCC-cccCccccC
Q 048693 376 NKHCHACGR-PADGFVYHCEEKG-RNLHPCCFN 406 (539)
Q Consensus 376 ~~~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~ 406 (539)
...||.|+. ++.|..|+|..|. |+|...|-.
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 378999998 7789999999997 999999864
No 126
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=94.78 E-value=0.22 Score=49.91 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCC---cccccCCc----chhhhchHHHHHH
Q 048693 178 NMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGK---RLCKNINP----DEAVAYGAAVQAA 250 (539)
Q Consensus 178 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~---~v~~~~~p----~~avA~GAal~a~ 250 (539)
++.+++.+...|...+.. ..+.+.|+|+|-.++++-+.+.+++.|.+. ++. ...+ -...|+|+|+.|.
T Consensus 240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhh
Confidence 334455555555554432 245789999999999999998888887432 221 1122 2458999999998
Q ss_pred HHcCC
Q 048693 251 VLSGN 255 (539)
Q Consensus 251 ~~~~~ 255 (539)
-+.|-
T Consensus 315 glaGG 319 (343)
T PF07318_consen 315 GLAGG 319 (343)
T ss_pred hhhcc
Confidence 88763
No 127
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=1.9 Score=43.31 Aligned_cols=41 Identities=22% Similarity=0.482 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 048693 181 LFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFF 226 (539)
Q Consensus 181 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f 226 (539)
.++.+.+..+++++..+ .+.++++||-+.+..+|+++++..
T Consensus 245 v~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 245 VFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 45566666677776554 568999999999999999999876
No 128
>PRK09604 UGMP family protein; Validated
Probab=94.51 E-value=6.2 Score=40.15 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCC---cchhhhchHHHHHHHHcC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~---p~~avA~GAal~a~~~~~ 254 (539)
+++.|+|+||-+.+.++++.|.+.+. +.++..+.. .|.++++|++=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999873 334544433 377888888865555555
No 129
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=94.31 E-value=0.023 Score=39.98 Aligned_cols=31 Identities=23% Similarity=0.578 Sum_probs=27.8
Q ss_pred cccccCC-CCCCceeecCCCC-cccCccccCCC
Q 048693 378 HCHACGR-PADGFVYHCEEKG-RNLHPCCFNLP 408 (539)
Q Consensus 378 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~lp 408 (539)
.|+.|.+ ++.|..|+|..|. |+|...|-...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence 5999998 8999999999996 99999997654
No 130
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.30 E-value=0.21 Score=54.00 Aligned_cols=81 Identities=26% Similarity=0.215 Sum_probs=50.1
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHH
Q 048693 169 ITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 248 (539)
Q Consensus 169 itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~ 248 (539)
-++.++...+-+-+.-.....-+.|.+. ...+++.|.++||+++++...+++.+.+ +.++..+.. .|+.+.|+|..
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~ 445 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAAL 445 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHH
Confidence 4565555444333322223323344433 2334679999999999999999999999 788876644 44555555555
Q ss_pred HHHHc
Q 048693 249 AAVLS 253 (539)
Q Consensus 249 a~~~~ 253 (539)
++...
T Consensus 446 ~~~~~ 450 (502)
T COG1070 446 AAAAL 450 (502)
T ss_pred HHHHh
Confidence 54444
No 131
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.30 E-value=0.024 Score=39.34 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=27.0
Q ss_pred cccccCCCCCCceeecCCCC-cccCccccCCC
Q 048693 378 HCHACGRPADGFVYHCEEKG-RNLHPCCFNLP 408 (539)
Q Consensus 378 ~C~~C~~~~~g~~Y~C~~C~-f~lH~~C~~lp 408 (539)
.||.|.+...|+.|+|..|. |||...|-.--
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCC
Confidence 59999998899999999996 99999996543
No 132
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=94.29 E-value=0.03 Score=39.40 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=27.7
Q ss_pred cccccC-CCCCCceeecCCCC-cccCccccCCCC
Q 048693 378 HCHACG-RPADGFVYHCEEKG-RNLHPCCFNLPR 409 (539)
Q Consensus 378 ~C~~C~-~~~~g~~Y~C~~C~-f~lH~~C~~lp~ 409 (539)
.||.|+ .++.|..|+|..|. |+|...|-.-+.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~ 35 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGV 35 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCC
Confidence 599999 68899999999995 999999976553
No 133
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=94.20 E-value=0.025 Score=39.73 Aligned_cols=30 Identities=33% Similarity=0.759 Sum_probs=26.4
Q ss_pred cccccCC-CCCCceeecCCCC-cccCccccCC
Q 048693 378 HCHACGR-PADGFVYHCEEKG-RNLHPCCFNL 407 (539)
Q Consensus 378 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~l 407 (539)
.||.|++ ++.|+.|+|..|. |+|...|-.-
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 5999996 7899999999996 9999999754
No 134
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.13 E-value=0.05 Score=56.70 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCCC--CCCeEEEEcCCCChHHHHHHHHHHhC-------CCcccccCCcchhhhchHHHHHHHH
Q 048693 184 KCIKHVDMCLRTGKTDKS--SVDDVVIVGGSARIPKVQQLLQEFFN-------GKRLCKNINPDEAVAYGAAVQAAVL 252 (539)
Q Consensus 184 ~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~i~~~l~~~f~-------~~~v~~~~~p~~avA~GAal~a~~~ 252 (539)
.|.+.+...|.+...... .|+.|+|+||.|.+|++.+.|...+- ...|....||-..+=+||+.+|+..
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 344555666655433322 38999999999999999999998772 3467788899999999999998764
No 135
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=93.89 E-value=0.042 Score=38.66 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=26.7
Q ss_pred ccccccCCCCCC---ceeecCCCCcccCccccC
Q 048693 377 KHCHACGRPADG---FVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~~~g---~~Y~C~~C~f~lH~~C~~ 406 (539)
.+|+.|++.+.+ ..|.|..|++.+|..|..
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 679999998876 579999999999999985
No 136
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=93.66 E-value=0.14 Score=55.00 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHH
Q 048693 26 QRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDF 105 (539)
Q Consensus 26 ~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~i 105 (539)
....+.++-+..|++.-.+-.|-+|-..+.+........+..+|+|+|||+|.+++++-.+.. ...+.++|.-.+
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl 167 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCVTW 167 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccchHH
Confidence 344555666667888755545555544443443332223468999999999999998733222 233467777776
Q ss_pred HHHH
Q 048693 106 DNRM 109 (539)
Q Consensus 106 d~~l 109 (539)
.+.+
T Consensus 168 ~e~f 171 (496)
T PRK11031 168 LERY 171 (496)
T ss_pred HHHh
Confidence 6543
No 137
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=93.39 E-value=0.038 Score=38.62 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.0
Q ss_pred ccccccCCCCCCc--eeecCCCCcccCccccCC
Q 048693 377 KHCHACGRPADGF--VYHCEEKGRNLHPCCFNL 407 (539)
Q Consensus 377 ~~C~~C~~~~~g~--~Y~C~~C~f~lH~~C~~l 407 (539)
.+|+.|++.+.+. .|.|..|++..|..|...
T Consensus 12 ~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 12 TKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 6799999988664 799999999999999753
No 138
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.21 E-value=0.13 Score=51.18 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHH
Q 048693 29 ATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNR 108 (539)
Q Consensus 29 ~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~ 108 (539)
.+.+.-+..|++.-.+-.|-+|-..+.+...........+++|+|||+|.++.++- +.+. ...+.++|.-.+.+.
T Consensus 76 ~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~---~~~Sl~lG~vrl~e~ 150 (285)
T PF02541_consen 76 FLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKVV---FSQSLPLGAVRLTER 150 (285)
T ss_dssp HHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEEE---EEEEES--HHHHHHH
T ss_pred HHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--Ceee---EeeeeehHHHHHHHH
Confidence 34444455688774444444443333332222124667899999999999998863 2221 233467888877665
Q ss_pred H
Q 048693 109 M 109 (539)
Q Consensus 109 l 109 (539)
+
T Consensus 151 ~ 151 (285)
T PF02541_consen 151 F 151 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=92.96 E-value=0.039 Score=59.17 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=60.3
Q ss_pred ccccccCCCCCCceeecCCCCcccCccccCCCCc------------ccC-CCeeEEEe--cccccccccccccccccccc
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLHPCCFNLPRK------------LPI-DSVEFELS--DKQLSKKCIWRNSKRLQETV 441 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~C~~lp~~------------i~~-~~h~~~l~--~~~~~~~c~~c~~~c~~~~~ 441 (539)
.+|.+|.+...-..-.|..|+..+|..|...-.+ ..+ ..|.|... +...+..|..|...|.....
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~ 124 (634)
T KOG1169|consen 45 MVCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGV 124 (634)
T ss_pred hhhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhh
Confidence 5899998865566789999999999988753211 111 12334333 34455578887665543211
Q ss_pred cCCCCeEEeecCCCeeecccchhhhhHH
Q 048693 442 CDRWGWSYVSKCKNYHCHAFCSTEMLLE 469 (539)
Q Consensus 442 ~~~~~~~y~~~~~~~~~H~~C~~~~~~~ 469 (539)
.. .--++|.+|.+.+|..|...++.+
T Consensus 125 ~~--~~g~~C~~C~~~vh~~C~~~~~~~ 150 (634)
T KOG1169|consen 125 GI--KQGLCCDWCGRTVHERCVRRADPE 150 (634)
T ss_pred cc--cCceeeccccchHHHHHHhhcCcc
Confidence 11 223789999999999999998876
No 140
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=92.88 E-value=0.54 Score=45.40 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhC---CCcccccCCcchhhhchHHH
Q 048693 200 KSSVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 200 ~~~i~~ViLvGG~s~~p~i~~~l~~~f~---~~~v~~~~~p~~avA~GAal 247 (539)
...+|.|+|+||.++...+-++|.+... ...+....+-.+|.|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 3578999999999999999999998762 23344455667888988864
No 141
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=92.86 E-value=0.066 Score=54.91 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCCCccCCC---CCCceecCCCCcccccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccccCCCCCCc
Q 048693 313 ECNGCKRPA---FGLMYRCELCNFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPADGF 389 (539)
Q Consensus 313 ~C~~C~~~~---~g~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~~g~ 389 (539)
.|-.|-..- .|.+..|..|+..+|+-|.... ....-| .+...|.-...+|++|.-.+.-
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~--dn~si~---------------s~~s~~stepWfCeaC~~Gvs~- 182 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVL--DNVSIP---------------SGSSDCSTEPWFCEACLYGVSL- 182 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccc--cccccC---------------CCCccCCCCchhhhhHhcCCCC-
Confidence 677775442 5677999999999999997541 111111 1122233356899999655432
Q ss_pred eeecCCCC-----c-------ccCccccCC-CCcccCCCeeE---EEecccccccccccccccccccccCCCCeEEeecC
Q 048693 390 VYHCEEKG-----R-------NLHPCCFNL-PRKLPIDSVEF---ELSDKQLSKKCIWRNSKRLQETVCDRWGWSYVSKC 453 (539)
Q Consensus 390 ~Y~C~~C~-----f-------~lH~~C~~l-p~~i~~~~h~~---~l~~~~~~~~c~~c~~~c~~~~~~~~~~~~y~~~~ 453 (539)
=+|.-|- | -+|.-||.. |.+---+-|.+ .|.....+..+..-|+.|..+ +--+.|-+-+|.-
T Consensus 183 -P~CElCPn~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~-~fARtGvci~Cda 260 (707)
T KOG0957|consen 183 -PHCELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDK-IFARTGVCIRCDA 260 (707)
T ss_pred -CccccCCCcCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccch-hhhhcceeeeccc
Confidence 4677664 1 378888854 44332222322 222222233333334444332 2233456556654
Q ss_pred --CCeeecccchhh
Q 048693 454 --KNYHCHAFCSTE 465 (539)
Q Consensus 454 --~~~~~H~~C~~~ 465 (539)
|.-|+||.|+..
T Consensus 261 GMCk~YfHVTCAQk 274 (707)
T KOG0957|consen 261 GMCKEYFHVTCAQK 274 (707)
T ss_pred hhhhhhhhhhHHhh
Confidence 788899999854
No 142
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=92.70 E-value=0.94 Score=46.38 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCccccc----CCcchhhhchHHHHHHH
Q 048693 176 ELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN----INPDEAVAYGAAVQAAV 251 (539)
Q Consensus 176 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~----~~p~~avA~GAal~a~~ 251 (539)
+++..+.+=+.+.|.+.++... ...+.|++.||+++.|.|.+.|++.++ .++... .+|+.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3334444444455555554332 224689999999999999999999996 444332 34443333446666644
Q ss_pred H
Q 048693 252 L 252 (539)
Q Consensus 252 ~ 252 (539)
.
T Consensus 339 ~ 339 (365)
T PRK09585 339 T 339 (365)
T ss_pred H
Confidence 4
No 143
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=92.62 E-value=2.6 Score=41.52 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=44.1
Q ss_pred CCeEEEEcC--CCChH-HHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCCCCCCccceEEEee
Q 048693 203 VDDVVIVGG--SARIP-KVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSNKVEDIVILDV 268 (539)
Q Consensus 203 i~~ViLvGG--~s~~p-~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~ 268 (539)
...|+|+|- ..+.| .+++.|++.+ +.++..- .. +..|+|+|+.|.-+.+- .++++-+++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L-~~-ksAA~G~AiIA~dI~gG----k~~iLGi~v 324 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL-DS-ESAAIGLALIAEDIFSG----KREILGIDV 324 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe-cc-hhhhhhHHHHHHHHhCC----cceEeeeee
Confidence 358999987 89999 9999999999 4554433 33 77899999999877753 345665554
No 144
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=92.53 E-value=0.38 Score=50.04 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC-CCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHc
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTDK-SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLS 253 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~ 253 (539)
+.+++..++.|.=..+++++...... ..++.+-+=||.+++.++.+...+.+ +.+|.++.+ .|+.|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhh
Confidence 34445556666555555555432221 15788888999999999999999999 788888744 6778999999998888
Q ss_pred C
Q 048693 254 G 254 (539)
Q Consensus 254 ~ 254 (539)
|
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 7
No 145
>PLN02920 pantothenate kinase 1
Probab=92.30 E-value=3.5 Score=42.29 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCCCChH-HHHHHHHH---Hh--CCCcccccCCcchhhhchHHHHH
Q 048693 201 SSVDDVVIVGGSARIP-KVQQLLQE---FF--NGKRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~p-~i~~~l~~---~f--~~~~v~~~~~p~~avA~GAal~a 249 (539)
.+++.|+++|...+.+ ..++.|.- ++ ++.+.....+.....|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4688999999999987 66664433 33 34567777788999999998744
No 146
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=92.29 E-value=3.6 Score=42.34 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=55.5
Q ss_pred EEeHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCCCCe-EEEEcCCCChHHHHHHHHHHhCCCcccccCC-cchhhhch
Q 048693 168 VITRARFEELNMDLFRKCI-KHVDMCLRTGKTDKSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKNIN-PDEAVAYG 244 (539)
Q Consensus 168 ~itr~e~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~-p~~avA~G 244 (539)
.-.++++...++..+++++ ..++..+++.+ ++. |.|.||.+.+-.+-..|.+..+-.++..+.- .|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4566777777777776664 44555555555 345 9999999999999999888743335555444 48899999
Q ss_pred HHHHHHHHcC
Q 048693 245 AAVQAAVLSG 254 (539)
Q Consensus 245 Aal~a~~~~~ 254 (539)
||+++....+
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999987765
No 147
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=92.24 E-value=3.1 Score=41.78 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCCcEEEEe-CCCCCHHHHHHH---HHHHHHcCCceeeeechhHHHHHHhccccc-cCCCceEEEEEeCCceeEEEEEEE
Q 048693 10 PVSNAVVTV-PAYFTNSQRQAT---KDAGAMAGLNVLNIISEPTAAAIACGLDRK-AASEKNVLIFDLGGGTFDVSLLAI 84 (539)
Q Consensus 10 ~v~~vvitV-P~~~~~~~r~~l---~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~-~~~~~~vlvvDiGggTtdisv~~~ 84 (539)
+++.+++|. |..|+-- |-.+ +..+...+++. .-++.-+|-|++..+... ...+-.++++| ||+|.+..++-
T Consensus 69 did~iav~~GPG~~tgl-rvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a~~~s~~~~~~~l~l~vs--GG~t~l~~~~~ 144 (305)
T TIGR00329 69 EIDLIAYTQGPGLGGSL-RVGATFARSLALSLDKPL-IGVNHLLGHIYAPRLDTNILQFPFVSLLVS--GGHTQIIAVKG 144 (305)
T ss_pred HCCEEEEecCCCchhhH-HHHHHHHHHHHHHhCCCE-eecccHHHHHHHhhhhcCCCCCCcEEEEEc--CCceEEEEEeC
Confidence 467888888 7666653 3222 33344445554 444555554443322211 11233444444 46777666652
Q ss_pred ecCeeeEEEecCCCCCcHHHHHHH
Q 048693 85 EKGIFKVKATAGDTHLGGEDFDNR 108 (539)
Q Consensus 85 ~~~~~~v~~~~~~~~lGG~~id~~ 108 (539)
...+++++..- ..--|+-||..
T Consensus 145 -~~~~~~l~~t~-d~S~GrlfD~v 166 (305)
T TIGR00329 145 -IGDYEVLGETL-DDAVGEAFDKV 166 (305)
T ss_pred -CCcEEEeeeec-CchhhHHHHHH
Confidence 24778887633 45557777743
No 148
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.86 E-value=0.046 Score=55.35 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=53.6
Q ss_pred ccccccCCCCCCc---eeecCCCCcccCccccCC-----CCccc-----CC--CeeEEEeccc-cccccccccccccccc
Q 048693 377 KHCHACGRPADGF---VYHCEEKGRNLHPCCFNL-----PRKLP-----ID--SVEFELSDKQ-LSKKCIWRNSKRLQET 440 (539)
Q Consensus 377 ~~C~~C~~~~~g~---~Y~C~~C~f~lH~~C~~l-----p~~i~-----~~--~h~~~l~~~~-~~~~c~~c~~~c~~~~ 440 (539)
.+|+-|..=+-|| -++|..|.|.+|..|-.+ |..-+ .+ .|.+.+ .++ ++.-|+-|++.-+.
T Consensus 57 TfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~-~tYssPTFCDhCGsLLyG-- 133 (683)
T KOG0696|consen 57 TFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKI-HTYSSPTFCDHCGSLLYG-- 133 (683)
T ss_pred chhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceee-eecCCCchhhhHHHHHHH--
Confidence 6799998866666 499999999999998653 33222 12 344444 333 33356666432110
Q ss_pred ccCCCCeEEeecCCCeeecccchhhhhH
Q 048693 441 VCDRWGWSYVSKCKNYHCHAFCSTEMLL 468 (539)
Q Consensus 441 ~~~~~~~~y~~~~~~~~~H~~C~~~~~~ 468 (539)
-.-.-.-|.+|++.+|-+|+.+...
T Consensus 134 ---l~HQGmKC~~C~mNVH~rCv~nVPs 158 (683)
T KOG0696|consen 134 ---LIHQGMKCDTCDMNVHHRCVENVPS 158 (683)
T ss_pred ---HHhcccccccccchHHHHHhhcCCc
Confidence 0001225678999999999987654
No 149
>PRK10854 exopolyphosphatase; Provisional
Probab=91.58 E-value=0.31 Score=52.69 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEe
Q 048693 27 RQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIE 85 (539)
Q Consensus 27 r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~ 85 (539)
...+.++-+..|++.-.+-.|-+|-..+.+...........+|+|+|||+|.+++++-.
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~ 157 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENF 157 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCC
Confidence 44445555666888744444445544443443333223568999999999999998743
No 150
>PRK14878 UGMP family protein; Provisional
Probab=91.55 E-value=7.5 Score=39.35 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCccccc
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKN 234 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~ 234 (539)
.++.|+|+||-+.+.++++.+.+.+. +.++..+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~ 275 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVV 275 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 36789999999999999999999762 3345444
No 151
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=91.40 E-value=0.12 Score=35.49 Aligned_cols=29 Identities=31% Similarity=0.776 Sum_probs=26.0
Q ss_pred ccccccCCCCCCceeecCCCC-cccCcccc
Q 048693 377 KHCHACGRPADGFVYHCEEKG-RNLHPCCF 405 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~-f~lH~~C~ 405 (539)
+.|+.||.+.....|||..+. ++|.+.|-
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF 30 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCY 30 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHH
Confidence 369999999998999999987 99999995
No 152
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=90.83 E-value=0.15 Score=50.27 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=27.8
Q ss_pred CcccccccCCC-CCCceeecCCCC-cccCccccCCC
Q 048693 375 CNKHCHACGRP-ADGFVYHCEEKG-RNLHPCCFNLP 408 (539)
Q Consensus 375 ~~~~C~~C~~~-~~g~~Y~C~~C~-f~lH~~C~~lp 408 (539)
.+..||+||+. ..+..|+|..|- |||+..|-.--
T Consensus 7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~ 42 (381)
T KOG1280|consen 7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENG 42 (381)
T ss_pred CCceeccccccceeeeeeEeeeecchhHHHHHhhcC
Confidence 35789999996 477789999995 99999997543
No 153
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.78 E-value=0.76 Score=47.09 Aligned_cols=77 Identities=26% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCccccc----CCcchhhhchHHHHH
Q 048693 174 FEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN----INPDEAVAYGAAVQA 249 (539)
Q Consensus 174 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~----~~p~~avA~GAal~a 249 (539)
-++++..+.+=+.+.|.+.+++... +++.|++.||+++.+.|.+.|++.+++.+|... ++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 3444555555555556555554332 278999999999999999999999987555433 344433344467777
Q ss_pred HHHc
Q 048693 250 AVLS 253 (539)
Q Consensus 250 ~~~~ 253 (539)
...-
T Consensus 336 ~~~~ 339 (364)
T PF03702_consen 336 YRRL 339 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 154
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=90.54 E-value=1.7 Score=45.23 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHH-HHhCCCcccccCCcchh
Q 048693 162 GIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQ-EFFNGKRLCKNINPDEA 240 (539)
Q Consensus 162 ~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~-~~f~~~~v~~~~~p~~a 240 (539)
+..-.+.||.++++++. -.-..|..-++-+|++++++..+|+.|+|.||++.---+.+.++ -.+|........---.+
T Consensus 288 ~~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~ 366 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNA 366 (412)
T ss_dssp SSSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-H
T ss_pred CCCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcH
Confidence 34456789999998764 33466778888999999999999999999999999777777776 33443322222222345
Q ss_pred hhchHHHHH
Q 048693 241 VAYGAAVQA 249 (539)
Q Consensus 241 vA~GAal~a 249 (539)
.-.||.+..
T Consensus 367 al~GA~~~L 375 (412)
T PF14574_consen 367 ALAGARMAL 375 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566666544
No 155
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=90.50 E-value=8.7 Score=38.58 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCHH------------HHHHHHHHH-HHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCce
Q 048693 10 PVSNAVVTVPAYFTNS------------QRQATKDAG-AMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGT 76 (539)
Q Consensus 10 ~v~~vvitVP~~~~~~------------~r~~l~~aa-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggT 76 (539)
++..+.|++|...+.. +...+++.. +..|++ +.+.++..|+|++-.+.......++++++.+|.|-
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi 135 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL 135 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence 4667788888654321 111233333 234664 68999999999875433222235678888888775
Q ss_pred eEEEEEE
Q 048693 77 FDVSLLA 83 (539)
Q Consensus 77 tdisv~~ 83 (539)
-.+++.
T Consensus 136 -G~giv~ 141 (318)
T TIGR00744 136 -GGGIII 141 (318)
T ss_pred -EEEEEE
Confidence 444543
No 156
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=90.44 E-value=1.8 Score=41.72 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=63.2
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEe
Q 048693 8 GSPVSNAVV--TVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIE 85 (539)
Q Consensus 8 g~~v~~vvi--tVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~ 85 (539)
|..+..++. .+|.+|+. -+++++.+...|.+. .+.+...||.+..+.+..-.....++++|+|=|.|-..+++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~-- 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK-- 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--
Confidence 556778888 78887553 245556666666666 66677777777776655544578899999999998887774
Q ss_pred cCeeeEEEecCCCCCcHHHHHHH
Q 048693 86 KGIFKVKATAGDTHLGGEDFDNR 108 (539)
Q Consensus 86 ~~~~~v~~~~~~~~lGG~~id~~ 108 (539)
++.+.-+.......+-.+.+...
T Consensus 186 ~~rI~GvfEHHT~~l~~~kL~~~ 208 (254)
T PF08735_consen 186 DGRIYGVFEHHTGMLTPEKLEEY 208 (254)
T ss_pred CCEEEEEEecccCCCCHHHHHHH
Confidence 55444444555455555544433
No 157
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=90.40 E-value=28 Score=37.88 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=39.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccC---CcchhhhchHHHHHHHHcC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNI---NPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~GAal~a~~~~~ 254 (539)
.++.|+|+||-+.+.++++.|.+.+. +.++..+. -.|.++++|++.+....++
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 36789999999999999999997662 34555543 3478888888876665554
No 158
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=90.25 E-value=20 Score=36.52 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCCcch
Q 048693 182 FRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNINPDE 239 (539)
Q Consensus 182 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~p~~ 239 (539)
++.+.+.++++++.. .++.|+++||-+.+.+||+.+++... +.++..+ .|..
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p-~~~~ 301 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAM-DERY 301 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeC-ChHh
Confidence 344445555555533 46789999999999999999999873 3344444 4443
No 159
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.15 E-value=0.065 Score=57.67 Aligned_cols=111 Identities=21% Similarity=0.365 Sum_probs=65.2
Q ss_pred ccccccccCCCCcCCCCccCCCCC--C-ceecCCCCcccccccccCCCCCC--CCC-CCCCC-ce--eEeccCCCCCCCC
Q 048693 300 AHYLQLKNHKTLSECNGCKRPAFG--L-MYRCELCNFNLHIPCMFIYRKPT--AKH-EFFGN-FT--FKFLPSLGACSTK 370 (539)
Q Consensus 300 ~H~L~l~~~~~~~~C~~C~~~~~g--~-~Y~C~~C~f~lH~~Ca~~p~~~~--~~h-~~~~~-h~--l~l~~~~~~~~~~ 370 (539)
.|.+.-+....+..|..|.+.++| . -|+|..|.++.|..|..+-.... .+. ..-+. -. ++.... .....
T Consensus 158 gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~P--hrf~~ 235 (694)
T KOG0694|consen 158 GHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNP--HRFVK 235 (694)
T ss_pred CcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCC--Ccchh
Confidence 455655666788899999999987 3 39999999999999963321100 001 00000 00 111100 00000
Q ss_pred cCcCCcccccccCCCCCCc---eeecCCCCcccCccccC-CCCccc
Q 048693 371 DCIDCNKHCHACGRPADGF---VYHCEEKGRNLHPCCFN-LPRKLP 412 (539)
Q Consensus 371 ~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~C~~-lp~~i~ 412 (539)
.......+|+-||....+. ...|..|+-..|-.|.. ++....
T Consensus 236 ~~~q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG 281 (694)
T KOG0694|consen 236 LNRQRPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCG 281 (694)
T ss_pred hhccCccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCC
Confidence 0001347899999865443 48999999999998874 343333
No 160
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.85 E-value=0.63 Score=46.63 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCceeeeechhHHHHHHh-ccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHH
Q 048693 28 QATKDAGAMAGLNVLNIISEPTAAAIAC-GLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFD 106 (539)
Q Consensus 28 ~~l~~aa~~AGl~~~~li~Ep~AAa~~~-~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id 106 (539)
..+.+.-+..|++. .+++..+=|.+.| +...... ....+++|+|||+|.++.+.-++.. ...+.++|.-.+.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~-~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~ 161 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP-IADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRLT 161 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC-CCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEhH
Confidence 33344445568876 4665555554544 3222221 1224999999999999988633211 1234556665555
Q ss_pred HH
Q 048693 107 NR 108 (539)
Q Consensus 107 ~~ 108 (539)
+.
T Consensus 162 e~ 163 (300)
T TIGR03706 162 EQ 163 (300)
T ss_pred Hh
Confidence 44
No 161
>PLN02666 5-oxoprolinase
Probab=88.84 E-value=15 Score=44.09 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=46.4
Q ss_pred EEeHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCc-ccccCCcchhhhchH
Q 048693 168 VITRARFEELNMDLF-RKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKR-LCKNINPDEAVAYGA 245 (539)
Q Consensus 168 ~itr~e~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~-v~~~~~p~~avA~GA 245 (539)
.++-++..+-+..+. +...+.|+......+.++.+. .++..||. =|...-.|.+.+ +.+ +..+.+|.-..|.|+
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~l-gi~~vivP~~~gv~sA~G~ 528 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARAL-GMSEVFVHRYCGILSAYGM 528 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHc-CCCEEEeCCCccHHHHHHH
Confidence 344555554444443 333445555555544443322 34444555 468888899999 554 878888888889998
Q ss_pred HHH
Q 048693 246 AVQ 248 (539)
Q Consensus 246 al~ 248 (539)
++-
T Consensus 529 ~~a 531 (1275)
T PLN02666 529 GLA 531 (1275)
T ss_pred Hhh
Confidence 863
No 162
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=88.65 E-value=2 Score=45.86 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEE
Q 048693 26 QRQATKDAGAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAI 84 (539)
Q Consensus 26 ~r~~l~~aa~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~ 84 (539)
.-+.+..+-+..|++.-.+-.|-+|--.+.+...........+|+|+|||+|.+++..-
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 34556667777788876666666765555554444333677899999999999999873
No 163
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=88.27 E-value=9.9 Score=38.68 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCCCCh-HHHHHHHH---HHh--CCCcccccCCcchhhhchHHHHH
Q 048693 201 SSVDDVVIVGGSARI-PKVQQLLQ---EFF--NGKRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~-p~i~~~l~---~~f--~~~~v~~~~~p~~avA~GAal~a 249 (539)
.+++.|+++|..-+. |...+.|. +++ ++.+.....+.....|+||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 357899999998764 77788888 556 34567778899999999998743
No 164
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=88.08 E-value=0.42 Score=39.98 Aligned_cols=83 Identities=16% Similarity=0.329 Sum_probs=51.0
Q ss_pred CCCCccCCCCCCceecCCCCcccccccccCCCCCCCCCCCCCC-ceeEeccCCCCCCCCcCcCCcccccccCCCCCCcee
Q 048693 313 ECNGCKRPAFGLMYRCELCNFNLHIPCMFIYRKPTAKHEFFGN-FTFKFLPSLGACSTKDCIDCNKHCHACGRPADGFVY 391 (539)
Q Consensus 313 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~-h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~~g~~Y 391 (539)
.|..|...+ ..++-..-+-..|..||..-+......+..-+ ..+.-++.. .....|..|++. .|..-
T Consensus 2 ~C~lC~~~~--Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~---------~~~~~C~iC~~~-~G~~i 69 (110)
T PF13832_consen 2 SCVLCPKRG--GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPS---------RFKLKCSICGKS-GGACI 69 (110)
T ss_pred ccEeCCCCC--CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecch---------hcCCcCcCCCCC-CceeE
Confidence 477787753 23444456778999999873322222221000 001111111 124789999997 67888
Q ss_pred ecCC--CCcccCccccCC
Q 048693 392 HCEE--KGRNLHPCCFNL 407 (539)
Q Consensus 392 ~C~~--C~f~lH~~C~~l 407 (539)
+|.. |...+||.||..
T Consensus 70 ~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 70 KCSHPGCSTAFHPTCARK 87 (110)
T ss_pred EcCCCCCCcCCCHHHHHH
Confidence 9999 999999999964
No 165
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=87.89 E-value=0.22 Score=49.01 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.1
Q ss_pred ccccccCC-CCCCceeecCCCC-cccCccccCC
Q 048693 377 KHCHACGR-PADGFVYHCEEKG-RNLHPCCFNL 407 (539)
Q Consensus 377 ~~C~~C~~-~~~g~~Y~C~~C~-f~lH~~C~~l 407 (539)
..||.|++ ++-|..|+|.+|- |||+..|-.=
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 56999999 8999999999996 9999999654
No 166
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.64 E-value=32 Score=34.67 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCC---cchhhhchHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYGAA 246 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~---p~~avA~GAa 246 (539)
.++.|+|+||-+.+.++++.|.+.+. +.++..+.. .|.++++|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 46789999999999999999998873 234444332 2667777765
No 167
>PRK00976 hypothetical protein; Provisional
Probab=86.36 E-value=5.7 Score=39.88 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCChH--HHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCCCCCCccceEEEee
Q 048693 202 SVDDVVIVGGSARIP--KVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSNKVEDIVILDV 268 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p--~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~~~~~~~~~~~~d~ 268 (539)
+++.|+|-||.++.+ .+.+.+++.+.. . ...-..++.++|||+.|....+- .++++-+++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~G----~~~ilgi~v 324 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFNG----KKDILGIEV 324 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhCC----CceeeeeEe
Confidence 478999999999997 788999888832 2 23334688999999999777542 345665554
No 168
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.30 E-value=0.4 Score=51.93 Aligned_cols=44 Identities=30% Similarity=0.614 Sum_probs=33.5
Q ss_pred CcCCCCccC-CCCCCceecCCC-CcccccccccCCCCCCCCCCCCCC
Q 048693 311 LSECNGCKR-PAFGLMYRCELC-NFNLHIPCMFIYRKPTAKHEFFGN 355 (539)
Q Consensus 311 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~~~~~h~~~~~ 355 (539)
..+|.+|++ +|.|.+|+|-.| |++|+..|.+..+ ....|..||.
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgr-aak~hk~~~p 648 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGR-AAKGHKMHYP 648 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHhhhcc-cccCCCCCCC
Confidence 456999976 689999999999 9999999987532 2244655543
No 169
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=85.49 E-value=0.46 Score=50.92 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=74.1
Q ss_pred CCCc-cCCCCC--CceecC--CCCcccccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccccCCCCCC
Q 048693 314 CNGC-KRPAFG--LMYRCE--LCNFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPADG 388 (539)
Q Consensus 314 C~~C-~~~~~g--~~Y~C~--~C~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~~g 388 (539)
|-.| .|.+|- +.-+|+ .|...+|..|... ++-|. +.++|.-|..-.+-
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI-----vqVPt----------------------GpWfCrKCesqera 60 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI-----VQVPT----------------------GPWFCRKCESQERA 60 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhccee-----EecCC----------------------Cchhhhhhhhhhhh
Confidence 4445 556653 457786 6999999999753 22221 34788888776666
Q ss_pred ceeecCCCCcc------------cCccccC-CCCcccCCCeeE---EEeccc---ccccccccccccccccccCCCCeEE
Q 048693 389 FVYHCEEKGRN------------LHPCCFN-LPRKLPIDSVEF---ELSDKQ---LSKKCIWRNSKRLQETVCDRWGWSY 449 (539)
Q Consensus 389 ~~Y~C~~C~f~------------lH~~C~~-lp~~i~~~~h~~---~l~~~~---~~~~c~~c~~~c~~~~~~~~~~~~y 449 (539)
-..+|..|-++ .|+-||. +|++---+-|.. -|...+ ....|.-|.+.-+. ..-..|.+.
T Consensus 61 arvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~Grp--nkA~~GACM 138 (900)
T KOG0956|consen 61 ARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRP--NKAAKGACM 138 (900)
T ss_pred ccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCc--cccccccce
Confidence 67888888763 7899984 565433333332 222221 11245555433221 112246666
Q ss_pred eecC--CCeeecccchhhhh
Q 048693 450 VSKC--KNYHCHAFCSTEML 467 (539)
Q Consensus 450 ~~~~--~~~~~H~~C~~~~~ 467 (539)
-|.- |.-.+||-|+-..-
T Consensus 139 tCNKs~CkqaFHVTCAQ~~G 158 (900)
T KOG0956|consen 139 TCNKSGCKQAFHVTCAQRAG 158 (900)
T ss_pred ecccccchhhhhhhHhhhhc
Confidence 5543 88999999996653
No 170
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=84.96 E-value=0.53 Score=50.50 Aligned_cols=94 Identities=19% Similarity=0.343 Sum_probs=56.5
Q ss_pred ccCCCCcCCCCccCCCCCCceecCCCCcc------------cccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCc
Q 048693 306 KNHKTLSECNGCKRPAFGLMYRCELCNFN------------LHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCI 373 (539)
Q Consensus 306 ~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~------------lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~ 373 (539)
.....+.+|.-|...-.-.+++|+.|-|. -|..||+. .|..-.--.+-=-|..|...|...
T Consensus 43 qVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALY-IPEVrFgNV~TMEPIiLq~VP~dR------ 115 (900)
T KOG0956|consen 43 QVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALY-IPEVRFGNVHTMEPIILQDVPHDR------ 115 (900)
T ss_pred ecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEee-ccceeecccccccceeeccCchhh------
Confidence 33468999999998887788999999764 59999976 333221111111233333333221
Q ss_pred CCcccccccCC---CC---CCceeecCC--CCcccCccccCC
Q 048693 374 DCNKHCHACGR---PA---DGFVYHCEE--KGRNLHPCCFNL 407 (539)
Q Consensus 374 ~~~~~C~~C~~---~~---~g~~Y~C~~--C~f~lH~~C~~l 407 (539)
-.++|=.|.+ +- .|-...|.. |.-.+|+-||..
T Consensus 116 -fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~ 156 (900)
T KOG0956|consen 116 -FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQR 156 (900)
T ss_pred -hcceeeeecccCCccccccccceecccccchhhhhhhHhhh
Confidence 2367888854 33 333344443 557899999863
No 171
>PRK03011 butyrate kinase; Provisional
Probab=84.54 E-value=4.5 Score=41.54 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC---CCcccccCCcchhhhchHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~---~~~v~~~~~p~~avA~GAal 247 (539)
++|.|+|+||.+..+.+++.|++.+. ...+....+..+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999999988773 23455555666899999764
No 172
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=84.01 E-value=0.72 Score=45.16 Aligned_cols=94 Identities=21% Similarity=0.390 Sum_probs=50.3
Q ss_pred CCCcCCCCccCCCCCCceecCCCCccccc------ccccCC-CCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccc
Q 048693 309 KTLSECNGCKRPAFGLMYRCELCNFNLHI------PCMFIY-RKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHA 381 (539)
Q Consensus 309 ~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~------~Ca~~p-~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~ 381 (539)
+.+..|. |..++.+.-|.|.+|.--++. .|...- ..+.+...+||-.||.-+...+.... ++...|-+
T Consensus 261 ~~ps~C~-CH~~~~~~Gy~CP~CkakvCsLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~----~~~~~Cf~ 335 (378)
T KOG2807|consen 261 DTPSFCA-CHSELSGGGYFCPQCKAKVCSLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEY----NGSRFCFA 335 (378)
T ss_pred cCcchhe-eccccccCceeCCcccCeeecCCccCCccceeEecchHHHHHHHhhcCCcchhhcccccc----CCCcceee
Confidence 3445564 557677777999888643322 221100 00111122334345554433222110 12356999
Q ss_pred c-CCCCCCceeecCCCCcccCccccCC
Q 048693 382 C-GRPADGFVYHCEEKGRNLHPCCFNL 407 (539)
Q Consensus 382 C-~~~~~g~~Y~C~~C~f~lH~~C~~l 407 (539)
| ++...+-.|+|..|.-.++.+|--+
T Consensus 336 C~~~~~~~~~y~C~~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 336 CQGELLSSGRYRCESCKNVFCLDCDVF 362 (378)
T ss_pred eccccCCCCcEEchhccceeeccchHH
Confidence 9 5556777899999988888888543
No 173
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=83.95 E-value=2.8 Score=47.12 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCC---cchhhhchHHHHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYGAAVQAA 250 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~---p~~avA~GAal~a~ 250 (539)
.++.|+|+||.+.+.++++.+.+.+. +.++..+.. .|.++++|.+++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998874 345544432 37899999988774
No 174
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=83.63 E-value=40 Score=31.85 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCC--CcccccCCcchhhhchHHH
Q 048693 179 MDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNG--KRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 179 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~--~~v~~~~~p~~avA~GAal 247 (539)
+.++..+.+.-++++...+ -+.|+++||-+....+|+++.....+ -++ ...|-..++-.|+-+
T Consensus 236 EtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 236 ETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCchHH
Confidence 3445555566666666544 35899999999999999999988732 222 233555566666654
No 175
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=83.39 E-value=0.76 Score=45.40 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=25.2
Q ss_pred CceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHH
Q 048693 64 EKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDF 105 (539)
Q Consensus 64 ~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~i 105 (539)
...++=+|+||||+..+++..++. .. ....++||+.+
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~Gkv----~d-TaCLdiGGRLi 180 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDAGKV----SD-TACLDIGGRLI 180 (473)
T ss_pred ceEEEEEeccCCccceeeeccccc----cc-ceeeecCcEEE
Confidence 456777999999999999874432 22 22356777654
No 176
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=83.14 E-value=55 Score=33.05 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--CCcccccCC---cchhhhch
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYG 244 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--~~~v~~~~~---p~~avA~G 244 (539)
.++.|+|+||-+.+.++.+.|.+.+. +.++..+.. .|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 36789999999999999999999652 344544332 25667766
No 177
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=82.04 E-value=1.2 Score=48.43 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=28.8
Q ss_pred CCCCcCCCCccCCC---CCCceecCCCCcccccccccC
Q 048693 308 HKTLSECNGCKRPA---FGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 308 ~~~~~~C~~C~~~~---~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
++....||.|..+- ...+-.|..||..+|..|+..
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGI 305 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGI 305 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhce
Confidence 45788899999984 335688999999999999864
No 178
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.71 E-value=2.1 Score=47.51 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=28.0
Q ss_pred eeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEE
Q 048693 42 LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAI 84 (539)
Q Consensus 42 ~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~ 84 (539)
..+.+-|.|-.++.........+ +++++||||.|||++++.-
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIID 297 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeec
Confidence 34566677765554332121123 6999999999999999983
No 179
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=79.70 E-value=20 Score=36.43 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhCCCcccc----cCCcchhhhchHHHHHHHHc
Q 048693 201 SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK----NINPDEAVAYGAAVQAAVLS 253 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~----~~~p~~avA~GAal~a~~~~ 253 (539)
.+.+.+++.||+.+.|++.+.+...+++.+|.. ..+++..=|.+-|+.|...-
T Consensus 289 ~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 289 GDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred CCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 456899999999999999999999997655553 33566656666777776553
No 180
>PF13941 MutL: MutL protein
Probab=78.60 E-value=13 Score=39.42 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=31.0
Q ss_pred EEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcH-HHHHHHHHHHH
Q 048693 67 VLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGG-EDFDNRMVNHF 113 (539)
Q Consensus 67 vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG-~~id~~l~~~l 113 (539)
+|++|||+.+|-++++....+..++++......-=. .|+..-+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999996666666775543221112 35555554444
No 181
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.51 E-value=3.5 Score=34.32 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=23.2
Q ss_pred ccccccCCCCC------------CceeecCCCCcccCccccCC
Q 048693 377 KHCHACGRPAD------------GFVYHCEEKGRNLHPCCFNL 407 (539)
Q Consensus 377 ~~C~~C~~~~~------------g~~Y~C~~C~f~lH~~C~~l 407 (539)
..|-+|..... ..+|.|..|.-++..+|..+
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 57999987542 34699999998888888543
No 182
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=78.04 E-value=1.9 Score=49.82 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=29.0
Q ss_pred ccCCCCcCCCCccCCCC---CCceecCCCCcccccccccC
Q 048693 306 KNHKTLSECNGCKRPAF---GLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 306 ~~~~~~~~C~~C~~~~~---g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
...+.+..|..|.+--. ...-.|..||..+|..|...
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi 253 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGI 253 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCC
Confidence 33456788999988753 34589999999999999864
No 183
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=77.93 E-value=1.4 Score=30.25 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=27.1
Q ss_pred cCCCCccCCCCCCceecCCC-CcccccccccC
Q 048693 312 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 312 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
+.|+.|+......+|+|..+ +++|...|...
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhC
Confidence 46999999998889999988 69999999753
No 184
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=76.90 E-value=20 Score=36.08 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=49.3
Q ss_pred HcCCceeeeechhHHHHHHhccccc----------cCCCceEEEEEeCCceeEEEEEEEecCeeeEEEe-cCCCCCcH-H
Q 048693 36 MAGLNVLNIISEPTAAAIACGLDRK----------AASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKAT-AGDTHLGG-E 103 (539)
Q Consensus 36 ~AGl~~~~li~Ep~AAa~~~~~~~~----------~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~-~~~~~lGG-~ 103 (539)
..|++.+.+||+=+|.|++...... ...+...+|+-.|.|-=-..++.. ++...++.+ .|...+.- .
T Consensus 89 ~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~-~~~~~v~~sEgGH~~fap~~ 167 (316)
T PF02685_consen 89 RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPD-GDGYYVLPSEGGHVDFAPRT 167 (316)
T ss_dssp CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEE-TTEEEEEEE-GGGSB---SS
T ss_pred HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEec-CCceEeCCCccccccCCCCC
Confidence 4588999999999999988632111 134677899888877554445544 444445554 44444443 4
Q ss_pred HHHHHHHHHHHHHH
Q 048693 104 DFDNRMVNHFIQEF 117 (539)
Q Consensus 104 ~id~~l~~~l~~~~ 117 (539)
+.+.+|.+++.+++
T Consensus 168 ~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 168 DEEAELLRFLRRRY 181 (316)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 56677888887655
No 185
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=76.42 E-value=2.2 Score=29.92 Aligned_cols=33 Identities=33% Similarity=0.744 Sum_probs=27.7
Q ss_pred cccccCCC-CCCceeecCCCCcccCccccCCCCc
Q 048693 378 HCHACGRP-ADGFVYHCEEKGRNLHPCCFNLPRK 410 (539)
Q Consensus 378 ~C~~C~~~-~~g~~Y~C~~C~f~lH~~C~~lp~~ 410 (539)
+|.+|+.. ..+..-.|..|+--.|..|..++..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~ 34 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEK 34 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChh
Confidence 47888873 4677899999999999999998765
No 186
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=75.27 E-value=1.8 Score=44.27 Aligned_cols=51 Identities=24% Similarity=0.640 Sum_probs=37.6
Q ss_pred CCcCCCCccCCCCCCc-eecCCC-CcccccccccCCCCCCCCCCCCCCceeEeccC
Q 048693 310 TLSECNGCKRPAFGLM-YRCELC-NFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPS 363 (539)
Q Consensus 310 ~~~~C~~C~~~~~g~~-Y~C~~C-~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~ 363 (539)
..+.|+.|...+.+.. .+|.+| ||+|+..|...-.. +-.| ...|+-+++..
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE-~~~H--~~~H~Yrim~~ 65 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAE-TGKH--QNDHPYRIMDT 65 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccc-cCCC--CCCCCceeecC
Confidence 4677999999998876 999999 69999999754211 1122 33488888765
No 187
>PRK07058 acetate kinase; Provisional
Probab=74.64 E-value=20 Score=36.99 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCC-ChHHHHHHHHHHhC
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSA-RIPKVQQLLQEFFN 227 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~f~ 227 (539)
+++-++.+|...|-...... ..+|.|+++||.+ +.+.+++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44455666666666665543 3589999999999 99999999998874
No 188
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=73.51 E-value=2.2 Score=46.19 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=71.5
Q ss_pred CCCCccCCCCCCceecCCCCcccccccccCCCCCC-------CCCC---CCCCceeEeccCCCCCCCCcCcCCccccccc
Q 048693 313 ECNGCKRPAFGLMYRCELCNFNLHIPCMFIYRKPT-------AKHE---FFGNFTFKFLPSLGACSTKDCIDCNKHCHAC 382 (539)
Q Consensus 313 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~~~-------~~h~---~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C 382 (539)
.|..|.....-..-.|+.|+..+|..|...-.+.. ..|. --+.|..+.-.-+ ...+|..|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~----------~~~~c~~c 115 (634)
T KOG1169|consen 46 VCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLW----------KPAYCFVC 115 (634)
T ss_pred hhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCC----------CCceEEec
Confidence 68888775544568899999999999964321100 0122 1122322221111 12556666
Q ss_pred CCCC--C----CceeecCCCCcccCccccCC--CCcccC--------C-CeeEEEecccccccccccccccccccccCCC
Q 048693 383 GRPA--D----GFVYHCEEKGRNLHPCCFNL--PRKLPI--------D-SVEFELSDKQLSKKCIWRNSKRLQETVCDRW 445 (539)
Q Consensus 383 ~~~~--~----g~~Y~C~~C~f~lH~~C~~l--p~~i~~--------~-~h~~~l~~~~~~~~c~~c~~~c~~~~~~~~~ 445 (539)
.+.. . ..-|.|.-|++.+|..|..- |..... . -+++.........+|..|+...... ..
T Consensus 116 ~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 191 (634)
T KOG1169|consen 116 PKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVKAD----QG 191 (634)
T ss_pred cccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhcccccc----cc
Confidence 5532 1 22489999999999999743 221111 0 1112222222233455544332111 11
Q ss_pred CeEEeecCCCeeecccchhh
Q 048693 446 GWSYVSKCKNYHCHAFCSTE 465 (539)
Q Consensus 446 ~~~y~~~~~~~~~H~~C~~~ 465 (539)
.--++|..|...+|..|..+
T Consensus 192 ~~~~~c~~~~~~~h~~~~~~ 211 (634)
T KOG1169|consen 192 LTGPRCGWCQIRVHDKCKSE 211 (634)
T ss_pred ccccccceeeeeeecchHHH
Confidence 12446666788888888653
No 189
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=73.05 E-value=15 Score=35.61 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=35.3
Q ss_pred CCCCeEEEEcCCCChHHH----HHHHHHHhC----CCccccc--CCcchhhhchHHHHHHHHcCC
Q 048693 201 SSVDDVVIVGGSARIPKV----QQLLQEFFN----GKRLCKN--INPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~p~i----~~~l~~~f~----~~~v~~~--~~p~~avA~GAal~a~~~~~~ 255 (539)
...+.|+|.|-++++|-+ ++.|++.|. +..+..- .--....|.|||+.|...+|-
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 345789999999997654 555665553 1222211 112234789999999888873
No 190
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=71.76 E-value=1 Score=31.83 Aligned_cols=38 Identities=34% Similarity=0.674 Sum_probs=20.6
Q ss_pred CCCCccCCCCC--------CceecCCCCcccccccccCCCCCCCCCCCCCCc
Q 048693 313 ECNGCKRPAFG--------LMYRCELCNFNLHIPCMFIYRKPTAKHEFFGNF 356 (539)
Q Consensus 313 ~C~~C~~~~~g--------~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~h 356 (539)
.|-+|..++.. .+|+|..|.-.+...|-. .-|..+|..
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~------fiHE~LH~C 46 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV------FIHETLHNC 46 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHHH------TTTTTS-SS
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcCh------hhhccccCC
Confidence 37788887744 579999998888888842 235555543
No 191
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=71.70 E-value=1.2e+02 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhC
Q 048693 182 FRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFN 227 (539)
Q Consensus 182 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~ 227 (539)
+.-|.+...++++......+.+...++.||-++..+|+..|+....
T Consensus 285 ~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 285 FRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred HHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHH
Confidence 4445555555555555556678899999999999999999998763
No 192
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=70.09 E-value=0.46 Score=49.87 Aligned_cols=42 Identities=29% Similarity=0.624 Sum_probs=35.3
Q ss_pred cccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccccC
Q 048693 301 HYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 342 (539)
Q Consensus 301 H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 342 (539)
|-+....+..+..|..|+..+.|.+ .+|..|.|..|..||..
T Consensus 268 HTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~ 312 (888)
T KOG4236|consen 268 HTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMK 312 (888)
T ss_pred eeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhh
Confidence 6666666778888999999886654 99999999999999854
No 194
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.22 E-value=34 Score=33.05 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.9
Q ss_pred eeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHH
Q 048693 42 LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 113 (539)
Q Consensus 42 ~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 113 (539)
..+++.-.||+....++.. ....+|||+|-|.+..+++. ++.+.-+.......+.-+.|...|..+.
T Consensus 207 av~mDskfaav~gal~dpa---a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~ 273 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA---ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFV 273 (342)
T ss_pred EEEEcchhHhhhhcccCcc---cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHH
Confidence 4666777777777766665 45899999999999888775 4455445555556666665555544444
No 195
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=69.13 E-value=2.3 Score=45.62 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=35.7
Q ss_pred ccccccccccCCCCcCCCCccCCCCCCceecCCCCcccccccccC
Q 048693 298 HQAHYLQLKNHKTLSECNGCKRPAFGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 298 Hp~H~L~l~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
+..|-+..+.......|+.|..++.-.-++|+.|+|.+|..|+..
T Consensus 176 l~~H~~~rktf~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~ 220 (678)
T KOG0193|consen 176 LTTHNFVRKTFFPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPR 220 (678)
T ss_pred ccceeeeeccccchhhhhhhcchhhhcccccCCCCCccccccCCC
Confidence 456666666666777799777777666699999999999999865
No 196
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=68.39 E-value=4.4 Score=23.76 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=13.6
Q ss_pred ccccCCCC----CCceeecCCCCc
Q 048693 379 CHACGRPA----DGFVYHCEEKGR 398 (539)
Q Consensus 379 C~~C~~~~----~g~~Y~C~~C~f 398 (539)
|..||..+ .+..|.|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 56676543 356799998885
No 197
>PLN02902 pantothenate kinase
Probab=68.16 E-value=1e+02 Score=35.27 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCh-----HHHHHHHHHHhC--CCcccccCCcchhhhchHHHHHH
Q 048693 201 SSVDDVVIVGGSARI-----PKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~-----p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAal~a~ 250 (539)
.+++.|+++|.+-+- ..|...+. +|. ..+.....+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 468899999987443 33333443 442 34566666777888999986543
No 198
>PRK13329 pantothenate kinase; Reviewed
Probab=67.95 E-value=49 Score=32.09 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHH
Q 048693 171 RARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 171 r~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~ 250 (539)
++..+.+..-.+..+...|+..+++.......--.|+++||.+. .+...++ .++ ..+|+ -|-.|...++.
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda~--~l~~~l~-----~~~--~~~~~-LvL~GL~~i~~ 245 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAEPECLLTGGAAW--KLAPSLT-----VPF--ELVDN-LVLDGLLVIAA 245 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhcC-----CCC--EECCC-cHHHHHHHHHh
Confidence 33445555555555555555555543211111127999999965 3443332 222 22444 36778776654
No 199
>PTZ00297 pantothenate kinase; Provisional
Probab=66.01 E-value=1.2e+02 Score=37.48 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcC-CCChHHHHHHHHHHh-----CCCcccccCCcchhhhchHHHH
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGG-SARIPKVQQLLQEFF-----NGKRLCKNINPDEAVAYGAAVQ 248 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~i~~~l~~~f-----~~~~v~~~~~p~~avA~GAal~ 248 (539)
+++...++..|.+-|-++-- ......+++.|+++|+ ....|...+.|.... ++.+.....+....-|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 34444444444444433221 1122356899999999 566888888887654 3456666667788899999874
No 200
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=64.92 E-value=2.1e+02 Score=30.97 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=56.4
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHH-HHHHHHhCCCcccccC-CcchhhhchH
Q 048693 168 VITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQ-QLLQEFFNGKRLCKNI-NPDEAVAYGA 245 (539)
Q Consensus 168 ~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~-~~l~~~f~~~~v~~~~-~p~~avA~GA 245 (539)
+....++...++..++++.-.+-+.+.+... .+.+.++||-+.+-..- +.+++.+ ..++.+.. -.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 3444556666666777776666666554321 57999999998887776 6666655 33444433 3478899999
Q ss_pred HHHHHHHcCCC
Q 048693 246 AVQAAVLSGNR 256 (539)
Q Consensus 246 al~a~~~~~~~ 256 (539)
|+++...-+..
T Consensus 330 Al~~~~~~~~~ 340 (555)
T COG2192 330 ALAVKRELGGA 340 (555)
T ss_pred HHHHHHHhcCC
Confidence 99998877643
No 201
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.00 E-value=4 Score=44.79 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=28.2
Q ss_pred CCCcCCCCccCCC-CCCceecCCCCcc-ccccccc
Q 048693 309 KTLSECNGCKRPA-FGLMYRCELCNFN-LHIPCMF 341 (539)
Q Consensus 309 ~~~~~C~~C~~~~-~g~~Y~C~~C~f~-lH~~Ca~ 341 (539)
.....|+.|..+- ......|.-|||. +|.+|..
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLD 247 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLD 247 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccC
Confidence 4567799999987 5667999999999 9999975
No 202
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=63.25 E-value=33 Score=33.89 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCC------CcccccCCcchhhhchHHHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNG------KRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~------~~v~~~~~p~~avA~GAal~a 249 (539)
+++.|+|-|+.+..+.+.+.+++.+.. .++..+.-.+.+.+.||+.++
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 467999988887777666777766632 123344445678899999875
No 203
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.70 E-value=3.2 Score=39.92 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=45.1
Q ss_pred CceecCCCCcccccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccccCCCCC-CceeecCCCCcccCc
Q 048693 324 LMYRCELCNFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPAD-GFVYHCEEKGRNLHP 402 (539)
Q Consensus 324 ~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~~-g~~Y~C~~C~f~lH~ 402 (539)
..-+|.+|.-.-|+.|...+.... -+.+. +...|... ..|..|+.+.. .-...|..|+--.|.
T Consensus 278 S~I~C~~C~~~~HP~Ci~M~~elv------------~~~KT---Y~W~C~~C-~lC~IC~~P~~E~E~~FCD~CDRG~HT 341 (381)
T KOG1512|consen 278 SWIVCKPCATRPHPYCVAMIPELV------------GQYKT---YFWKCSSC-ELCRICLGPVIESEHLFCDVCDRGPHT 341 (381)
T ss_pred cceeecccccCCCCcchhcCHHHH------------hHHhh---cchhhccc-HhhhccCCcccchheeccccccCCCCc
Confidence 348899999999999987642211 00110 11112212 67899988763 345779999999999
Q ss_pred cccCCC
Q 048693 403 CCFNLP 408 (539)
Q Consensus 403 ~C~~lp 408 (539)
-|..|-
T Consensus 342 ~CVGL~ 347 (381)
T KOG1512|consen 342 LCVGLQ 347 (381)
T ss_pred cccccc
Confidence 998763
No 204
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=62.51 E-value=5.8 Score=39.89 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.7
Q ss_pred CceEEEEEeCCceeEEEEEEEe
Q 048693 64 EKNVLIFDLGGGTFDVSLLAIE 85 (539)
Q Consensus 64 ~~~vlvvDiGggTtdisv~~~~ 85 (539)
-.+++++||||.|||++++.-+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCCEEEEEcCccceeeEEecCC
Confidence 4458999999999999999743
No 205
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=62.46 E-value=4.8 Score=41.20 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=21.8
Q ss_pred CCCCccCCCCCCceecCCCCcccccccc
Q 048693 313 ECNGCKRPAFGLMYRCELCNFNLHIPCM 340 (539)
Q Consensus 313 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca 340 (539)
.|-+|.+.+.|.---|+.=|=.+|..|.
T Consensus 276 iC~~C~K~V~g~~~ac~Am~~~fHv~CF 303 (468)
T KOG1701|consen 276 ICAFCHKTVSGQGLAVEAMDQLFHVQCF 303 (468)
T ss_pred hhhhcCCcccCcchHHHHhhhhhcccce
Confidence 7999999998876666666666677774
No 206
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=62.37 E-value=6.3 Score=28.19 Aligned_cols=31 Identities=26% Similarity=0.614 Sum_probs=27.0
Q ss_pred cccccccCCCC--CCceeecCCCCcccCccccC
Q 048693 376 NKHCHACGRPA--DGFVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 376 ~~~C~~C~~~~--~g~~Y~C~~C~f~lH~~C~~ 406 (539)
+..|.+||+.+ .+-.-.|..|+-.-|..|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 36799999998 67789999999999999864
No 207
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=62.17 E-value=1.5e+02 Score=29.59 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCh-HHHHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcCC
Q 048693 181 LFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARI-PKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 255 (539)
Q Consensus 181 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~~ 255 (539)
++++....|...++... -......+.|.||..+. ++..+.+++.+.. +|.-.+..||.+.|....+.
T Consensus 228 Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~~~ 295 (301)
T COG2971 228 ILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRFGE 295 (301)
T ss_pred HHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhhhh
Confidence 45666666666666543 22345789999999887 8888888887732 33566889999988776653
No 208
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=61.83 E-value=2.1 Score=45.34 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=37.1
Q ss_pred ccccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccccCC
Q 048693 300 AHYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCMFIY 343 (539)
Q Consensus 300 ~H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~p 343 (539)
.|.+++...+.+..|+.|.....|.+ |.|.-|.-+.|..|...-
T Consensus 523 ~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~v 569 (865)
T KOG2996|consen 523 NHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRV 569 (865)
T ss_pred CcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCC
Confidence 46677766678889999999887766 999999999999998763
No 209
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=61.69 E-value=8.4 Score=26.92 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCCCccCCC-CCCceecCCCCcccccccccC
Q 048693 313 ECNGCKRPA-FGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 313 ~C~~C~~~~-~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
+|..|+... .+..-.|+.|+-..|..|...
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCC
Confidence 377788855 556799999999999999875
No 210
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.58 E-value=3 Score=41.44 Aligned_cols=43 Identities=30% Similarity=0.623 Sum_probs=36.3
Q ss_pred ccccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccccC
Q 048693 300 AHYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 342 (539)
Q Consensus 300 ~H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 342 (539)
.|.++-+.....-.|-.|...++|.- |+|-.|...+|+.|-.+
T Consensus 130 gh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~ 175 (593)
T KOG0695|consen 130 GHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGL 175 (593)
T ss_pred Ccchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhccc
Confidence 56777777777888999999998743 99999999999999755
No 211
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=60.40 E-value=20 Score=26.22 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=30.3
Q ss_pred hhhhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 048693 4 EDYVGSPVSNAVVTVPAYFTNSQRQATKDAGAMAGLNV 41 (539)
Q Consensus 4 e~~~g~~v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~ 41 (539)
+.++..+ .-.++-|+.++..+|..+.+.|+..|+..
T Consensus 9 ~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 9 EDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3455444 77889999999999999999999999965
No 212
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=59.50 E-value=40 Score=33.55 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCC--------CcccccCCcchhhhchHHHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNG--------KRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~--------~~v~~~~~p~~avA~GAal~a 249 (539)
+++.|+|-||.+..+.+.+.|++.+.. .++..+.-.+.+.++||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467888877777666666666665521 133444456778899999765
No 213
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.18 E-value=11 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=23.4
Q ss_pred CcCCCCccCCCC------------CCceecCCCCcccccccc
Q 048693 311 LSECNGCKRPAF------------GLMYRCELCNFNLHIPCM 340 (539)
Q Consensus 311 ~~~C~~C~~~~~------------g~~Y~C~~C~f~lH~~Ca 340 (539)
...|.+|..++. ..+|+|..|.-++...|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 345999988653 247999999988888885
No 214
>PRK13322 pantothenate kinase; Reviewed
Probab=58.57 E-value=78 Score=30.61 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHH
Q 048693 173 RFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 173 e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~ 250 (539)
..+.+..-.+..+...|+..+++.......--.|+++||.+. .+...++. ...+|+ -|-.|...++.
T Consensus 177 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~a~--~l~~~l~~--------~~~~~~-LvL~GL~~~~~ 243 (246)
T PRK13322 177 TVDAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGDAP--LLADHLPQ--------ARVVPD-LVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhCCC--------CEECCC-cHHHHHHHHHh
Confidence 344444455555555555555433211111137999999965 34443322 122444 36778776553
No 215
>PRK13318 pantothenate kinase; Reviewed
Probab=57.80 E-value=1.2e+02 Score=29.46 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCcEEEEe--CCCCCHHHHHHHHHHHHHcCCceeeeechhH-------------------HHHHHhccccccCCCceE
Q 048693 9 SPVSNAVVTV--PAYFTNSQRQATKDAGAMAGLNVLNIISEPT-------------------AAAIACGLDRKAASEKNV 67 (539)
Q Consensus 9 ~~v~~vvitV--P~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~-------------------AAa~~~~~~~~~~~~~~v 67 (539)
..+..+.++. | ..++..+..++ ...+..+..+..... |++++....... .+
T Consensus 55 ~~i~~I~issVvp-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~~----~~ 126 (258)
T PRK13318 55 EDITGIIISSVVP-SVMHSLERMCR---KYFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELYGG----PL 126 (258)
T ss_pred ccCceEEEEEecC-chHHHHHHHHH---HHhCCCCeEEECCCcCCCCceecCChhhcchHHHHHHHHHHHHcCC----CE
Q ss_pred EEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 048693 68 LIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLS 147 (539)
Q Consensus 68 lvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls 147 (539)
+|+|+|..+| +.++.-++... .|...-|=...-++|.+.-
T Consensus 127 ivid~GTA~t-~d~v~~~g~~~-----GG~I~PG~~l~~~aL~~~t---------------------------------- 166 (258)
T PRK13318 127 IVVDFGTATT-FDVVSAKGEYL-----GGVIAPGINISADALFQRA---------------------------------- 166 (258)
T ss_pred EEEEcCCceE-EEEEcCCCcEE-----EEEECccHHHHHHHHHhhh----------------------------------
Q ss_pred CCCeEEEEEccccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCh
Q 048693 148 STSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARI 215 (539)
Q Consensus 148 ~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 215 (539)
-.++......+... +-++..+.+..-++......|+.++++.......--.|+++||.+..
T Consensus 167 ------a~Lp~~~~~~~~~~-~g~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~a~~ 227 (258)
T PRK13318 167 ------AKLPRVEITKPDSV-IGKNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGLAPL 227 (258)
T ss_pred ------hcCCCCcCCCCCcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHH
No 216
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=56.26 E-value=4.7 Score=39.90 Aligned_cols=33 Identities=33% Similarity=0.916 Sum_probs=27.4
Q ss_pred CCcCCCCccC-CCCCCceecCCC-CcccccccccC
Q 048693 310 TLSECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 342 (539)
Q Consensus 310 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 342 (539)
-+..|+.|.. ++-|++|+|+.| ++.++..|.-.
T Consensus 239 hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 239 HPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred CCccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 4566999965 468899999999 89999999754
No 218
>PRK13328 pantothenate kinase; Reviewed
Probab=54.75 E-value=1.1e+02 Score=29.78 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHHHH
Q 048693 173 RFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 173 e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~ 250 (539)
..+.+..-++..+...|+..+++......+--.|+++||.+. .+.+.++ .. ...+|+ -|-.|..+++.
T Consensus 185 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda~--~l~~~l~-----~~--~~~~p~-LvL~GL~~i~~ 252 (255)
T PRK13328 185 TPDAISAGCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAAD--AVAPALT-----VP--HTRHDN-LVLLGLALIAA 252 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhCC-----CC--CEECCC-cHHHHHHHHHh
Confidence 344444455555555555555432211111237999999965 3433331 11 122444 47788776654
No 219
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=54.38 E-value=41 Score=34.49 Aligned_cols=68 Identities=19% Similarity=0.085 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCC-ccc--ccCCcchhhhchHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGK-RLC--KNINPDEAVAYGAAV 247 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~-~v~--~~~~p~~avA~GAal 247 (539)
+++.+..++...|...+...+ .++|.|++.||.+..+.+.+.|.+.+... +|. -..+-.++.|.||..
T Consensus 271 a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 344444444444544444321 25799999999999999999998887422 222 222334567777653
No 220
>PF12773 DZR: Double zinc ribbon
Probab=54.37 E-value=14 Score=25.64 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=11.7
Q ss_pred ccccccCCCCCCceeecCCCC
Q 048693 377 KHCHACGRPADGFVYHCEEKG 397 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~ 397 (539)
.+|..||.......-.|..|+
T Consensus 30 ~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 30 KICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCcCCcCCCcCCcCccCccc
Confidence 556666665554444455553
No 221
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=54.27 E-value=5.8 Score=41.24 Aligned_cols=35 Identities=23% Similarity=0.664 Sum_probs=28.3
Q ss_pred cCCCCcCCCCccCCC-CCCceecCCCCccccccccc
Q 048693 307 NHKTLSECNGCKRPA-FGLMYRCELCNFNLHIPCMF 341 (539)
Q Consensus 307 ~~~~~~~C~~C~~~~-~g~~Y~C~~C~f~lH~~Ca~ 341 (539)
.....+.|..|+..- ....-.|.+|+...|.-|..
T Consensus 540 ~~a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~ 575 (707)
T KOG0957|consen 540 PKAMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLS 575 (707)
T ss_pred ccccceeeeeeccchhhHHHhhcchhhceeeccccC
Confidence 334567899999876 44668999999999999975
No 222
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=54.24 E-value=2.1e+02 Score=28.54 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=52.1
Q ss_pred HcCCceeeeechhHHHHHHhcccccc----------CCCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCc-HHH
Q 048693 36 MAGLNVLNIISEPTAAAIACGLDRKA----------ASEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLG-GED 104 (539)
Q Consensus 36 ~AGl~~~~li~Ep~AAa~~~~~~~~~----------~~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lG-G~~ 104 (539)
..|++.+.+||+=+|.|++......+ ......+|+-=|-|-=-..++....+.+-+.+..+...++ .+.
T Consensus 93 ~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~~~w~~lp~EGGHvdf~P~~~ 172 (320)
T COG0837 93 ELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNGGGWIPLPGEGGHVDFAPRSE 172 (320)
T ss_pred hcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecCCeeEeccCCCccccCCCCCH
Confidence 46999999999999999886321111 2345667766555544455555555533333445555555 466
Q ss_pred HHHHHHHHHHHHHH
Q 048693 105 FDNRMVNHFIQEFK 118 (539)
Q Consensus 105 id~~l~~~l~~~~~ 118 (539)
.+-.+.+++.+++.
T Consensus 173 ~E~~i~~~l~~~~G 186 (320)
T COG0837 173 REFQILEYLRARFG 186 (320)
T ss_pred HHHHHHHHHHHhcC
Confidence 77888888876643
No 223
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=53.73 E-value=5.5 Score=39.00 Aligned_cols=50 Identities=14% Similarity=0.458 Sum_probs=35.0
Q ss_pred CcCCCCccCCCCC-CceecCCC-CcccccccccCCCCCCCCCCCCCCceeEeccC
Q 048693 311 LSECNGCKRPAFG-LMYRCELC-NFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPS 363 (539)
Q Consensus 311 ~~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~ 363 (539)
.+.|+.|...... .+-+|.+| +|+|+..|.......-..||. |+.+....
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~py---H~YRiiet 56 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPY---HGYRIIET 56 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCC---CCeeEeec
Confidence 4679999988844 56899999 999999998653333333442 56666543
No 224
>PF13941 MutL: MutL protein
Probab=53.69 E-value=9.9 Score=40.19 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=35.7
Q ss_pred HHHHHHHHH-----HHHcCCce------eeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEE
Q 048693 25 SQRQATKDA-----GAMAGLNV------LNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLL 82 (539)
Q Consensus 25 ~~r~~l~~a-----a~~AGl~~------~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~ 82 (539)
..|+++++. .+.-|++. ..+++-|.|+..+..+-... ....+|+||+||-|||+--+
T Consensus 198 paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~-~~g~llvVDIGGATTDVhSv 265 (457)
T PF13941_consen 198 PAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEG-GIGDLLVVDIGGATTDVHSV 265 (457)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhc-ccCCEEEEEccCcccchhhh
Confidence 345555543 33346543 46677788876655322221 36789999999999998433
No 225
>PRK07157 acetate kinase; Provisional
Probab=53.44 E-value=35 Score=35.41 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHH-HHHHHHHHhC
Q 048693 178 NMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPK-VQQLLQEFFN 227 (539)
Q Consensus 178 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~-i~~~l~~~f~ 227 (539)
++-++.+|...|-......+ ..+|.|+++||.+.... |++.|.+.+.
T Consensus 299 ~d~f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 299 LDLYAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 34445566666655554332 24899999999998877 9999998774
No 226
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.33 E-value=8.6 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=18.0
Q ss_pred cccccCCCCCCceeecCCCCccc
Q 048693 378 HCHACGRPADGFVYHCEEKGRNL 400 (539)
Q Consensus 378 ~C~~C~~~~~g~~Y~C~~C~f~l 400 (539)
.|-.|+..+.-..=.|..|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 57888888877777888888764
No 227
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=52.95 E-value=8.2 Score=37.69 Aligned_cols=30 Identities=27% Similarity=0.549 Sum_probs=20.2
Q ss_pred ccccccCCC------------CCCceeecCCCCcccCccccC
Q 048693 377 KHCHACGRP------------ADGFVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~------------~~g~~Y~C~~C~f~lH~~C~~ 406 (539)
..|-+|..+ .....|+|..|.-.++.+|--
T Consensus 363 ~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 363 THCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred ccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 568888652 124469999888776766643
No 228
>PRK09557 fructokinase; Reviewed
Probab=52.89 E-value=25 Score=34.98 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhC--------CCcccccCCcchhhhchHHHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFN--------GKRLCKNINPDEAVAYGAAVQA 249 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~--------~~~v~~~~~p~~avA~GAal~a 249 (539)
+++.|+|-||.+..+.+.+.|++.+. ..++..+.-.+.+.++||++..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 46788888888777666555555442 1223333344667888988753
No 229
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=52.23 E-value=11 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=38.2
Q ss_pred cccccccCCCCCCce-eecCCCC-cccCccccCCCCccc--CCCeeEEEecc
Q 048693 376 NKHCHACGRPADGFV-YHCEEKG-RNLHPCCFNLPRKLP--IDSVEFELSDK 423 (539)
Q Consensus 376 ~~~C~~C~~~~~g~~-Y~C~~C~-f~lH~~C~~lp~~i~--~~~h~~~l~~~ 423 (539)
.+.|+.|..++.|.. .+|..|- |+|+..|-.---.+. ..+|+-++-.+
T Consensus 14 ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 478999999998887 9999998 999999976543333 35888888655
No 230
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=51.17 E-value=73 Score=33.71 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=29.8
Q ss_pred EEeCCceeEEEEEEEecCeeeEEEecCC-CCCcHHHHHHHHHHHHHHHHHHh
Q 048693 70 FDLGGGTFDVSLLAIEKGIFKVKATAGD-THLGGEDFDNRMVNHFIQEFKRK 120 (539)
Q Consensus 70 vDiGggTtdisv~~~~~~~~~v~~~~~~-~~lGG~~id~~l~~~l~~~~~~~ 120 (539)
+|||+.+|-++++.+++..+...+.... ... .|+..-+++...+++.++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~--~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES--DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch--hhhhcchHHHHHHHHHHh
Confidence 5999999999999877776655555443 222 255444334444444433
No 231
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=50.82 E-value=7.6 Score=22.34 Aligned_cols=10 Identities=30% Similarity=1.221 Sum_probs=6.6
Q ss_pred eecCCCCccc
Q 048693 326 YRCELCNFNL 335 (539)
Q Consensus 326 Y~C~~C~f~l 335 (539)
|+|+.|+|.-
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 8899999865
No 232
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.66 E-value=12 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCcCCCCccCCC--CCCceecCCCCcccccccccC
Q 048693 310 TLSECNGCKRPA--FGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 310 ~~~~C~~C~~~~--~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
....|..|++++ .+..-.|..|.=-.|..|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456799999999 678899999999999999853
No 233
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=50.57 E-value=7.3 Score=38.43 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=13.8
Q ss_pred CCeEEeecCCCeeecccchh
Q 048693 445 WGWSYVSKCKNYHCHAFCST 464 (539)
Q Consensus 445 ~~~~y~~~~~~~~~H~~C~~ 464 (539)
.+-.|+|.-|.-++++.|-.
T Consensus 342 ~~~~y~C~~Ck~~FCldCDv 361 (378)
T KOG2807|consen 342 SSGRYRCESCKNVFCLDCDV 361 (378)
T ss_pred CCCcEEchhccceeeccchH
Confidence 45677777777777777743
No 234
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=50.26 E-value=16 Score=40.26 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=26.0
Q ss_pred cCCCCccCCCCC-------CceecCCCCcccccccccC
Q 048693 312 SECNGCKRPAFG-------LMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 312 ~~C~~C~~~~~g-------~~Y~C~~C~f~lH~~Ca~~ 342 (539)
..|..|+.+.+- -.+||..|+..++..|...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSn 498 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITK 498 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCC
Confidence 569999999853 3599999999999999754
No 235
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.37 E-value=15 Score=41.29 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhC
Q 048693 186 IKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFN 227 (539)
Q Consensus 186 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~ 227 (539)
++.|.+.|.+- -..++|+==-+..|-+.+.++..|+
T Consensus 235 l~~i~~~L~~G------kqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 235 LEAIAKVLAQG------KQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred HHHHHHHHHcC------CEEEEEeccccchHHHHHHHHHHhC
Confidence 45566666532 2578888888888999999999995
No 236
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.35 E-value=38 Score=32.74 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=41.5
Q ss_pred eEEEEEeCCceeEEEEEEEec-CeeeE----------------------EEecCCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 048693 66 NVLIFDLGGGTFDVSLLAIEK-GIFKV----------------------KATAGDTHLGGEDFDNRMVNHFIQEFKRKTE 122 (539)
Q Consensus 66 ~vlvvDiGggTtdisv~~~~~-~~~~v----------------------~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 122 (539)
.++++|+|.||.|+-.+.-.. +.... ++..| ...||--++.++..++.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc------C
Confidence 478999999999998776321 11111 12223 567888888888777732 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 048693 123 KDISGSPRAAQRLRKNCERAKR 144 (539)
Q Consensus 123 ~~~~~~~~~~~rL~~~~e~~K~ 144 (539)
..+-....+...+.+..|+.++
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2222334444444455555544
No 237
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=48.91 E-value=84 Score=30.48 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHH
Q 048693 171 RARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLL 222 (539)
Q Consensus 171 r~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l 222 (539)
++..+.+....+-.....|+..+++.+.....-..++++||.++ .+.+.+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhc
Confidence 34566666666666666666666654432223469999999865 454444
No 238
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=47.50 E-value=4.8 Score=29.87 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCCccCCCCCCceecCCCCcccccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccccCC
Q 048693 314 CNGCKRPAFGLMYRCELCNFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHACGR 384 (539)
Q Consensus 314 C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~ 384 (539)
|..|... ....|-|-+|.+.. |...+......|-.-.+|+|.+-..... .+|-.|+.
T Consensus 1 C~~C~~~-~~~lw~CL~Cg~~~---C~~~~~~Ha~~H~~~~~H~l~v~~~~~~----------i~C~~C~~ 57 (63)
T PF02148_consen 1 CSVCGST-NSNLWLCLTCGYVG---CGRYSNGHALKHYKETGHPLAVSLSTGS----------IWCYACDD 57 (63)
T ss_dssp -SSSHTC-SSSEEEETTTS-EE---ETTTSTSHHHHHHHHHT--EEEETTTTC----------EEETTTTE
T ss_pred CCCCCCc-CCceEEeCCCCccc---ccCCcCcHHHHhhcccCCeEEEECCCCe----------EEEcCCCc
Confidence 6677766 56679999999655 5443222233454445688888665443 67777654
No 239
>PRK09698 D-allose kinase; Provisional
Probab=46.75 E-value=77 Score=31.43 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCh-----HHHHHHHHHHhC------CCcccccCCcchhhhchHHHHHH
Q 048693 202 SVDDVVIVGGSARI-----PKVQQLLQEFFN------GKRLCKNINPDEAVAYGAAVQAA 250 (539)
Q Consensus 202 ~i~~ViLvGG~s~~-----p~i~~~l~~~f~------~~~v~~~~~p~~avA~GAal~a~ 250 (539)
+++.|+|-||.+.. +.+++.+++... ..++..+...+.+.++||+..+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46788888887654 345566665431 12344555567788999998764
No 240
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=46.25 E-value=12 Score=27.13 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.7
Q ss_pred CCceeecCCCCcc
Q 048693 387 DGFVYHCEEKGRN 399 (539)
Q Consensus 387 ~g~~Y~C~~C~f~ 399 (539)
.+..|.|..|+|.
T Consensus 45 ~~~~Y~CP~CGF~ 57 (59)
T PRK14890 45 QSNPYTCPKCGFE 57 (59)
T ss_pred cCCceECCCCCCc
Confidence 3567888888884
No 241
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=45.31 E-value=16 Score=29.92 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=23.2
Q ss_pred ccccccCCCCCCceeecCCCCcccCccccC
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~C~~ 406 (539)
..|..|+++...-.+.-..|+-.+|..|+.
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 679999998865555555777889999974
No 242
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.03 E-value=7.7 Score=29.36 Aligned_cols=27 Identities=30% Similarity=0.834 Sum_probs=19.0
Q ss_pred CCCCccCCC--CCCceecCCC--Cccccccc
Q 048693 313 ECNGCKRPA--FGLMYRCELC--NFNLHIPC 339 (539)
Q Consensus 313 ~C~~C~~~~--~g~~Y~C~~C--~f~lH~~C 339 (539)
.|-.|..++ .+..|+|+.| +|.++..|
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~C 33 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFC 33 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-
T ss_pred cCCCCCCccEEeCCEEECccccccceecccC
Confidence 588888887 3457999999 58888888
No 243
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=44.85 E-value=68 Score=33.44 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCC-ChHHHHHHHHHHhC
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSA-RIPKVQQLLQEFFN 227 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~f~ 227 (539)
+++-++.+|...|-....... ..+|.|+++||.+ ..+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 444455666666666655431 3599999999999 99999999998874
No 244
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=44.73 E-value=12 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=10.3
Q ss_pred CCceeecCCCCcc
Q 048693 387 DGFVYHCEEKGRN 399 (539)
Q Consensus 387 ~g~~Y~C~~C~f~ 399 (539)
.|..|.|..|+|.
T Consensus 47 ~g~~Y~Cp~CGF~ 59 (61)
T COG2888 47 LGNPYRCPKCGFE 59 (61)
T ss_pred cCCceECCCcCcc
Confidence 4668999999884
No 245
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=43.87 E-value=2.1e+02 Score=29.61 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=26.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCChH-HHHHHHHH
Q 048693 169 ITRARFEELNMDLFRKCIKHVDMCLRTGKTD--KSSVDDVVIVGGSARIP-KVQQLLQE 224 (539)
Q Consensus 169 itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p-~i~~~l~~ 224 (539)
++.+.++.+++.+++.....= .+.+.. ......|.++||.+.+- .+...+++
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q----~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSE----NDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----HHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 445556666655555443221 111221 22457899999776653 33444444
No 246
>PRK13331 pantothenate kinase; Reviewed
Probab=43.79 E-value=1.7e+02 Score=28.43 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 048693 172 ARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFF 226 (539)
Q Consensus 172 ~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f 226 (539)
+..+.+-..++......|+..+++......+ -.|+++||.+. .+.+.++..+
T Consensus 174 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~-~~vi~TGG~a~--~l~~~~~~~~ 225 (251)
T PRK13331 174 NTQEAIQSGVIYTILAGLRDFIEDWLSLFPD-GKIVLTGGDGE--LLHNYLQDLD 225 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHhhccc
Confidence 3344444444444444444444322111112 37999999854 6677766654
No 247
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=43.62 E-value=56 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.479 Sum_probs=19.0
Q ss_pred CCCCccCCC--CCCceecCCCCccccc
Q 048693 313 ECNGCKRPA--FGLMYRCELCNFNLHI 337 (539)
Q Consensus 313 ~C~~C~~~~--~g~~Y~C~~C~f~lH~ 337 (539)
.|.-|+..+ .+..|.|..|++....
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCcccc
Confidence 588888876 3457999999987554
No 248
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=43.40 E-value=29 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=27.7
Q ss_pred ccCCC--CCCceeecCCCCcc-cCccccCCCCcccCCCeeEEEecc
Q 048693 381 ACGRP--ADGFVYHCEEKGRN-LHPCCFNLPRKLPIDSVEFELSDK 423 (539)
Q Consensus 381 ~C~~~--~~g~~Y~C~~C~f~-lH~~C~~lp~~i~~~~h~~~l~~~ 423 (539)
+|+.. ...+.|+|..|..+ .+.-|...-..-.|.+|...+...
T Consensus 2 ~C~~~~~~~~~~y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~~ 47 (71)
T smart00396 2 VCTYKFTGGEVIYRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKTS 47 (71)
T ss_pred CCCCccCCCCEEEECcCCCCCCCEeEChHHCCCCCCCCCCEEEEEe
Confidence 45553 35678999999853 233455555556678888776555
No 249
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=42.80 E-value=17 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=25.6
Q ss_pred ccccccCCCCCCceeecCCCCcccCccccC
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~C~~ 406 (539)
.+|+.|..+..---++|..|+|.+|..|+.
T Consensus 190 ~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~ 219 (678)
T KOG0193|consen 190 AFCDSCCNKFLFTGFRCQTCGYKFHQSCSP 219 (678)
T ss_pred hhhhhhcchhhhcccccCCCCCccccccCC
Confidence 679988887766668999999999999985
No 250
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=42.56 E-value=1.2e+02 Score=32.66 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=61.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeEEEEEEEecCeee
Q 048693 12 SNAVVTVPAYFTNSQRQATKDA-GAMAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFDVSLLAIEKGIFK 90 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~a-a~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtdisv~~~~~~~~~ 90 (539)
.-+++|-+.--...+|+.|.+. -+..|++.+.+=-+..=+.+ .+.....+..-+||++|..+|-+-.+--+...
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~---hN~~~~~~~~~liis~g~~~T~vipvldG~~i-- 191 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFY---HNYGKSSNKSGLIISMGHSATHVIPVLDGRLI-- 191 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHh---hccCcccCcceEEEecCCCcceeEEEecCchh--
Confidence 3466777766666778888665 45568877665444332221 12222223468999999999988777633322
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHH
Q 048693 91 VKATAGDTHLGGEDFDNRMVNHFIQE 116 (539)
Q Consensus 91 v~~~~~~~~lGG~~id~~l~~~l~~~ 116 (539)
+....-.++||.....-|.+++..+
T Consensus 192 -l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 192 -LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred -hhcceeeccCcchHHHHHHHHHhcc
Confidence 2233447899998887777777554
No 251
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=42.55 E-value=20 Score=37.70 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=34.6
Q ss_pred HHHHHHHHHH-----HHHcCCce------eeeechhHHHHHHhcccccc---CCC-ceEEEEEeCCceeEEEEE
Q 048693 24 NSQRQATKDA-----GAMAGLNV------LNIISEPTAAAIACGLDRKA---ASE-KNVLIFDLGGGTFDVSLL 82 (539)
Q Consensus 24 ~~~r~~l~~a-----a~~AGl~~------~~li~Ep~AAa~~~~~~~~~---~~~-~~vlvvDiGggTtdisv~ 82 (539)
+..|+++++. .+.-|++. ..+++-|.|+..+.-+-... ..+ ..+++||+||-|||+--+
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSA 266 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhc
Confidence 3456666665 33335543 35667777776554222211 112 349999999999998444
No 252
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=42.49 E-value=21 Score=29.22 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=24.0
Q ss_pred CCcCCCCccCCCCCCceecCCCCccccccccc
Q 048693 310 TLSECNGCKRPAFGLMYRCELCNFNLHIPCMF 341 (539)
Q Consensus 310 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~ 341 (539)
....|..|++++....+.=-.|+-.+|..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34569999999966554444677889999975
No 253
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.95 E-value=52 Score=24.15 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=27.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAMAGLNV 41 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~AGl~~ 41 (539)
..-.++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 467789999999999999999999999976
No 254
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=41.60 E-value=3 Score=42.49 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.8
Q ss_pred CCCcCCCCccCCCCCC--------------ceecCCCCcc
Q 048693 309 KTLSECNGCKRPAFGL--------------MYRCELCNFN 334 (539)
Q Consensus 309 ~~~~~C~~C~~~~~g~--------------~Y~C~~C~f~ 334 (539)
-++|.|..|++.-.+. -|+|.+|+=.
T Consensus 265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KV 304 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKV 304 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCccccc
Confidence 3678899999875332 2999999733
No 255
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=41.54 E-value=12 Score=39.55 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCC-----C------ccc---ccCCcchhhhchHHHHHHHHcC
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNG-----K------RLC---KNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~-----~------~v~---~~~~p~~avA~GAal~a~~~~~ 254 (539)
--+.|.++||+...|++...|++..-+ . +|. ...||...+=.|||++|.....
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~ 592 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFV 592 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHH
Confidence 347899999999999999999987632 1 122 2358888888999999987774
No 256
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=40.94 E-value=6.8 Score=41.64 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=25.2
Q ss_pred ccccccCCCCCCce---eecCCCCcccCccccC
Q 048693 377 KHCHACGRPADGFV---YHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~~~g~~---Y~C~~C~f~lH~~C~~ 406 (539)
..|++|.+-.+|.+ |.|..|+-+.|..|..
T Consensus 535 tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~ 567 (865)
T KOG2996|consen 535 TSCKVCQMLLRGTFYQGYKCEKCGADAHKECLG 567 (865)
T ss_pred cchHHHHHHhhhhhhcceeeeeccccHHHHhcc
Confidence 67999998766664 8999999999988864
No 257
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=40.94 E-value=12 Score=38.21 Aligned_cols=88 Identities=13% Similarity=0.311 Sum_probs=46.9
Q ss_pred CcCCCCccCCCCCCceecCCCCcccccccccCCCCCCCCCCCCCCceeEeccCCCCCCCCcCcCCcccccccCC-CCCCc
Q 048693 311 LSECNGCKRPAFGLMYRCELCNFNLHIPCMFIYRKPTAKHEFFGNFTFKFLPSLGACSTKDCIDCNKHCHACGR-PADGF 389 (539)
Q Consensus 311 ~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~-~~~g~ 389 (539)
..+|..|...-.-.---|++||.+.+..|-..--| .+-|+ -+|. |++...+..+. .-..+.=..|-. +..+.
T Consensus 162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp--~rgpl-akh~--l~~~~~grvs~--~~s~r~~~~ct~h~~e~~ 234 (699)
T KOG4367|consen 162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHP--PRGPL-AKHR--LVPPAQGRVSR--RLSPRKVSTCTDHELENH 234 (699)
T ss_pred hhhhhhhcCChhhhhhhHhhCceEEechHHhccCC--CCCch-hhcc--cCCcccCceee--ccchhhhhhccCCCCCCc
Confidence 45688887765444467888888888888543111 11221 1222 22222221100 001133344543 45677
Q ss_pred eeecCCCCcccCcccc
Q 048693 390 VYHCEEKGRNLHPCCF 405 (539)
Q Consensus 390 ~Y~C~~C~f~lH~~C~ 405 (539)
...|.+|...++-.|.
T Consensus 235 smyc~~ck~pvc~~cl 250 (699)
T KOG4367|consen 235 SMYCVQCKMPVCYQCL 250 (699)
T ss_pred eEEEEecCChHHHHHH
Confidence 7889999988887775
No 258
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.58 E-value=17 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.515 Sum_probs=27.8
Q ss_pred CCCcCCCCccCCCCCCceecCC--CCcccccccccC
Q 048693 309 KTLSECNGCKRPAFGLMYRCEL--CNFNLHIPCMFI 342 (539)
Q Consensus 309 ~~~~~C~~C~~~~~g~~Y~C~~--C~f~lH~~Ca~~ 342 (539)
.....|..|+.. .|..-+|.. |+-.+|..||..
T Consensus 53 ~~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 53 RFKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred hcCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHH
Confidence 346679999998 566789987 999999999965
No 259
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=40.16 E-value=12 Score=25.39 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=15.4
Q ss_pred CCCccCCCCCCceecC--CCCcccccccccC
Q 048693 314 CNGCKRPAFGLMYRCE--LCNFNLHIPCMFI 342 (539)
Q Consensus 314 C~~C~~~~~g~~Y~C~--~C~f~lH~~Ca~~ 342 (539)
|..|++.+.- -.+|+ .|+.-||..|+..
T Consensus 1 C~~C~~iv~~-G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEIVTQ-GQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB-SS-SEE-SS--S--EE-HHHHHH
T ss_pred CcccchhHee-eccCCCCccCchHHHHHHHH
Confidence 6788887632 28998 6999999999864
No 260
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.00 E-value=10 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.564 Sum_probs=12.5
Q ss_pred cccccccCCCC----C-CceeecCCCCcccCcccc
Q 048693 376 NKHCHACGRPA----D-GFVYHCEEKGRNLHPCCF 405 (539)
Q Consensus 376 ~~~C~~C~~~~----~-g~~Y~C~~C~f~lH~~C~ 405 (539)
...|..||+.+ . ..+--|..|+|.+...|-
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~Cy 43 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCY 43 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHH
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHH
Confidence 47899999854 3 345689999998887774
No 261
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=39.84 E-value=12 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=13.1
Q ss_pred CceecCCCCcccccccccC
Q 048693 324 LMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 324 ~~Y~C~~C~f~lH~~Ca~~ 342 (539)
...+|+.|+..+|..|...
T Consensus 3 ~ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-
T ss_pred ceEEeCCCCCcCChhhCCc
Confidence 3578999999999999865
No 262
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.99 E-value=27 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCCcCCCCccCCCCC----CceecCCCCcccccc
Q 048693 309 KTLSECNGCKRPAFG----LMYRCELCNFNLHIP 338 (539)
Q Consensus 309 ~~~~~C~~C~~~~~g----~~Y~C~~C~f~lH~~ 338 (539)
.....|..|+..... ..|.|..|++.+|..
T Consensus 26 ~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CCccCccCcccccccccccceEEcCCCCCEECcH
Confidence 355669999887633 349999999988754
No 263
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=38.71 E-value=32 Score=35.48 Aligned_cols=20 Identities=35% Similarity=0.757 Sum_probs=18.0
Q ss_pred CceEEEEEeCCceeEEEEEE
Q 048693 64 EKNVLIFDLGGGTFDVSLLA 83 (539)
Q Consensus 64 ~~~vlvvDiGggTtdisv~~ 83 (539)
...+.++|+|||+|+++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 57899999999999998875
No 264
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=38.36 E-value=7.5 Score=42.48 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=7.7
Q ss_pred cccccccCCCC
Q 048693 376 NKHCHACGRPA 386 (539)
Q Consensus 376 ~~~C~~C~~~~ 386 (539)
.|.||-|+++.
T Consensus 950 PfQCdKClKRF 960 (1007)
T KOG3623|consen 950 PFQCDKCLKRF 960 (1007)
T ss_pred cchhhhhhhhc
Confidence 47788887754
No 265
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=37.91 E-value=1.2e+02 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCh
Q 048693 173 RFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARI 215 (539)
Q Consensus 173 e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 215 (539)
.-+.+-.-++......|+..+++.......--.|+++||.++.
T Consensus 177 T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 177 TREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 3444444455555555555444322111111379999999875
No 266
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=37.50 E-value=1.3e+02 Score=31.43 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=25.4
Q ss_pred CCCceEEEEEeCCceeEEEEEEEe-cCeeeEEE
Q 048693 62 ASEKNVLIFDLGGGTFDVSLLAIE-KGIFKVKA 93 (539)
Q Consensus 62 ~~~~~vlvvDiGggTtdisv~~~~-~~~~~v~~ 93 (539)
.....+|++|+||..+-++.+++. ++.+++..
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~ 104 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQ 104 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCccccc
Confidence 356789999999999999999998 44554443
No 267
>PRK13320 pantothenate kinase; Reviewed
Probab=37.46 E-value=1.5e+02 Score=28.58 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=11.2
Q ss_pred CceEEEEEeCCcee
Q 048693 64 EKNVLIFDLGGGTF 77 (539)
Q Consensus 64 ~~~vlvvDiGggTt 77 (539)
+..++|+|+|.-+|
T Consensus 113 ~~~~lVID~GTA~T 126 (244)
T PRK13320 113 GKNVLAIDAGTAIT 126 (244)
T ss_pred CCCEEEEEcCCceE
Confidence 45799999998765
No 268
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=37.11 E-value=13 Score=37.00 Aligned_cols=30 Identities=33% Similarity=0.715 Sum_probs=25.4
Q ss_pred ccccccC-CCCCCceeecCCCC-cccCccccC
Q 048693 377 KHCHACG-RPADGFVYHCEEKG-RNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~-~~~~g~~Y~C~~C~-f~lH~~C~~ 406 (539)
..|+.|. +..-||.|+|.+|. |.+++.|..
T Consensus 241 v~cs~c~srs~~gfry~cq~C~nyqlcq~cfw 272 (434)
T KOG4301|consen 241 VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW 272 (434)
T ss_pred ccCcceecccccchhhhHhhcCCccccchhhc
Confidence 5799996 46799999999997 889999953
No 269
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=36.22 E-value=90 Score=30.72 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=47.0
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchh
Q 048693 168 VITRARFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEA 240 (539)
Q Consensus 168 ~itr~e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~a 240 (539)
.++.++|++..-|++.+|.+.+++.+.+.++ ..|-.|+..-|+.- .+.+.-..-+.-..+..+.+|.++
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~--~~vPmi~fakG~g~--~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGL--APVPMILFAKGSGG--ALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcC--CCCceEEEEcCcch--HHHHHHhcCCcEEeecccccHHHH
Confidence 6889999999999999999999999987654 35667777765542 333333333322344556666654
No 270
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=34.90 E-value=1.3e+02 Score=31.50 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCC-ChHHHHHHHHHHhC
Q 048693 178 NMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSA-RIPKVQQLLQEFFN 227 (539)
Q Consensus 178 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~f~ 227 (539)
++-+..+|...|-......+ ..+|.|+++||.+ ..+.|++.|.+.+.
T Consensus 306 ~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 306 IKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34445566666655554332 2489999999999 89999999998874
No 271
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.70 E-value=24 Score=20.42 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=9.2
Q ss_pred ccccCCCCCCceeecCCCCc
Q 048693 379 CHACGRPADGFVYHCEEKGR 398 (539)
Q Consensus 379 C~~C~~~~~g~~Y~C~~C~f 398 (539)
|.-||..+..-.=.|..|+.
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCcCcchhhhCC
Confidence 55555544333323555554
No 272
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.30 E-value=15 Score=34.97 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=8.0
Q ss_pred ccccccCCCC
Q 048693 377 KHCHACGRPA 386 (539)
Q Consensus 377 ~~C~~C~~~~ 386 (539)
|+|++||+.+
T Consensus 4 FtCnvCgEsv 13 (276)
T KOG2186|consen 4 FTCNVCGESV 13 (276)
T ss_pred Eehhhhhhhc
Confidence 7899998744
No 273
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=34.29 E-value=1.1e+02 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNV 41 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~ 41 (539)
...-.++.|+.+++.+|+.+...|...|+..
T Consensus 15 ~~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 15 RMRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3466677899999999999999999999965
No 274
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.09 E-value=42 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=16.5
Q ss_pred ccccccCCCCCCceeecCCCCcccC
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLH 401 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH 401 (539)
+.|.-||.... .|.|..|++.+-
T Consensus 652 ~fCP~CG~~~~--~y~CPKCG~El~ 674 (1121)
T PRK04023 652 YRCPRCGIEVE--EDECEKCGREPT 674 (1121)
T ss_pred eeCccccCcCC--CCcCCCCCCCCC
Confidence 67888877654 477888887544
No 275
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=33.16 E-value=55 Score=30.76 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCceeEEEEEEEecC-eeeE
Q 048693 63 SEKNVLIFDLGGGTFDVSLLAIEKG-IFKV 91 (539)
Q Consensus 63 ~~~~vlvvDiGggTtdisv~~~~~~-~~~v 91 (539)
....++.+|+||.++-+..+++.+. .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 3467999999999999999999875 3433
No 276
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=33.13 E-value=80 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=27.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAMAGLNVL 42 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~ 42 (539)
..-.+..|+.++..+|..+.+.|+..|+...
T Consensus 16 ~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 16 KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3367889999999999999999999999653
No 277
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=32.96 E-value=26 Score=34.47 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=36.6
Q ss_pred cccccccCCCCCC-ceeecCCC-CcccCccccCC--CCcccCCCeeEEEeccc
Q 048693 376 NKHCHACGRPADG-FVYHCEEK-GRNLHPCCFNL--PRKLPIDSVEFELSDKQ 424 (539)
Q Consensus 376 ~~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~C~~l--p~~i~~~~h~~~l~~~~ 424 (539)
.+.||+|..+... .+-.|..| +|||+.-|-.- -....++.|+-++-.+.
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietn 57 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETN 57 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeecc
Confidence 3789999887744 46899999 79999999643 33444568888887664
No 278
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=32.77 E-value=45 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=16.9
Q ss_pred cccccCCCC--CCceeecCCCCcccCcc
Q 048693 378 HCHACGRPA--DGFVYHCEEKGRNLHPC 403 (539)
Q Consensus 378 ~C~~C~~~~--~g~~Y~C~~C~f~lH~~ 403 (539)
.|..|.... ..-.|.|..|+..|+..
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C~v~lC~~ 29 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKCDVPLCVE 29 (32)
T ss_pred CCeECCcCCccceeEEEccCCCCcccCC
Confidence 366775532 23579999998666643
No 279
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.76 E-value=2.3e+02 Score=27.39 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcCCCChHH---HHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHc
Q 048693 199 DKSSVDDVVIVGGSARIPK---VQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLS 253 (539)
Q Consensus 199 ~~~~i~~ViLvGG~s~~p~---i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~ 253 (539)
.....+.|+|.|--+.+.. +++.|++... .++ ..-|.+..+.|.|+.|.-..
T Consensus 265 ~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~-~k~--~~l~~esaaiG~a~IA~DI~ 319 (332)
T COG4020 265 VVYGCDGVVLAGSVGGDREPMDVLKRIKSKVF-NKV--AVLPPESAAIGLALIARDIA 319 (332)
T ss_pred eecCCceEEEecccccccchhhHHHHHHHHHH-HHH--hhcCchhhhhhhHHHHHHHH
Confidence 3456789999997777766 7777777662 222 22345558999999887665
No 280
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=32.32 E-value=25 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=25.5
Q ss_pred ccccccCCCCCCceeecCCCCcccCccccCCCCcccCCCee
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLHPCCFNLPRKLPIDSVE 417 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~C~~lp~~i~~~~h~ 417 (539)
..|..|++. ...|.|..|+..+...|.... |.+|.
T Consensus 4 ~~C~~H~~~--~~~~~C~~C~~~~C~~C~~~~----H~~H~ 38 (42)
T PF00643_consen 4 PKCPEHPEE--PLSLFCEDCNEPLCSECTVSG----HKGHK 38 (42)
T ss_dssp SB-SSTTTS--BEEEEETTTTEEEEHHHHHTS----TTTSE
T ss_pred ccCccCCcc--ceEEEecCCCCccCccCCCCC----CCCCE
Confidence 567777653 368999999999999998765 55554
No 281
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=31.70 E-value=1.2e+02 Score=31.87 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCC
Q 048693 175 EELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSA 213 (539)
Q Consensus 175 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 213 (539)
+++-+-+++.|.+.+.+++.+++...++|..+.++|-++
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~ 94 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTT 94 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHH
Confidence 334445667777888888888898899999999999553
No 282
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=30.95 E-value=32 Score=22.09 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=5.0
Q ss_pred eeecCCCCc
Q 048693 390 VYHCEEKGR 398 (539)
Q Consensus 390 ~Y~C~~C~f 398 (539)
.+.|..|++
T Consensus 22 R~vC~~Cg~ 30 (34)
T PF14803_consen 22 RLVCPACGF 30 (34)
T ss_dssp EEEETTTTE
T ss_pred ceECCCCCC
Confidence 455655554
No 283
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=30.82 E-value=35 Score=35.66 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=28.4
Q ss_pred ccCCCCcCCCCccCCC--CCCceecCCCCcccccccccC
Q 048693 306 KNHKTLSECNGCKRPA--FGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 306 ~~~~~~~~C~~C~~~~--~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
.+..+...|.+|..|. +..+.+|..|+=.++-.|...
T Consensus 896 ipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~a 934 (990)
T KOG1819|consen 896 IPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCA 934 (990)
T ss_pred CCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccC
Confidence 3445667799999997 455699999998888888654
No 284
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=30.81 E-value=32 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=6.4
Q ss_pred eeecCCCCcccC
Q 048693 390 VYHCEEKGRNLH 401 (539)
Q Consensus 390 ~Y~C~~C~f~lH 401 (539)
.|.|..||+..|
T Consensus 14 ~~~Cp~cGipth 25 (55)
T PF13824_consen 14 NFECPDCGIPTH 25 (55)
T ss_pred CCcCCCCCCcCc
Confidence 355555555444
No 285
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=30.66 E-value=24 Score=21.88 Aligned_cols=20 Identities=35% Similarity=0.813 Sum_probs=13.7
Q ss_pred ccccccCCCCCCceeecCCCCcc
Q 048693 377 KHCHACGRPADGFVYHCEEKGRN 399 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~ 399 (539)
..|.+|+. ...|.|..|+..
T Consensus 3 ~~C~vC~~---~~kY~Cp~C~~~ 22 (30)
T PF04438_consen 3 KLCSVCGN---PAKYRCPRCGAR 22 (30)
T ss_dssp EEETSSSS---EESEE-TTT--E
T ss_pred CCCccCcC---CCEEECCCcCCc
Confidence 57999988 457999999864
No 286
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=30.54 E-value=1.2e+02 Score=30.16 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEE-EcCCCChHHHHHHHHHHhC
Q 048693 178 NMDLFRKCIKHVDMCLRTGKTDKSSVDDVVI-VGGSARIPKVQQLLQEFFN 227 (539)
Q Consensus 178 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~i~~~l~~~f~ 227 (539)
.++.-.-+...|+++|+++++++.+||.+++ +..+.-.|.+-.+|-+.|+
T Consensus 80 ~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 80 REEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3333445577888999999999999997766 4677889999999999993
No 287
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=30.14 E-value=62 Score=34.19 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHH-----cCC----ceeeeechhHHHHHH-----hccccccC------CCceEEEEEeCCceeEEEEEEE
Q 048693 25 SQRQATKDAGAM-----AGL----NVLNIISEPTAAAIA-----CGLDRKAA------SEKNVLIFDLGGGTFDVSLLAI 84 (539)
Q Consensus 25 ~~r~~l~~aa~~-----AGl----~~~~li~Ep~AAa~~-----~~~~~~~~------~~~~vlvvDiGggTtdisv~~~ 84 (539)
.+++++.+.++. .++ ..+++|+-.+=+.++ |++..-.. ....+.++|+||++|.|+..--
T Consensus 104 ~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 104 EQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp HHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEET
T ss_pred hhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeeccC
Confidence 455566555543 243 236777654443333 33332221 2578999999999999996543
No 288
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=30.00 E-value=1.9e+02 Score=28.67 Aligned_cols=70 Identities=24% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCCC--CCeEEEEcCCCC-hHHHHHHHHHHhCCC---cccccCCcchhhhchHHHHHHHHcC
Q 048693 185 CIKHVDMCLRTGKTDKSS--VDDVVIVGGSAR-IPKVQQLLQEFFNGK---RLCKNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 185 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~-~p~i~~~l~~~f~~~---~v~~~~~p~~avA~GAal~a~~~~~ 254 (539)
+...|..++.+......+ .=.|+++||.-. +..+++-.-..+.+. +-.....|.+.-|.|||++|+.+.+
T Consensus 244 Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 244 LGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred HHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 334455555544433222 347999999744 344444333222111 1122336778889999999998875
No 289
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=29.77 E-value=23 Score=39.06 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=29.0
Q ss_pred ccccccCC-CCCCceeecCCC-CcccCccccCCCCccc
Q 048693 377 KHCHACGR-PADGFVYHCEEK-GRNLHPCCFNLPRKLP 412 (539)
Q Consensus 377 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~C~~lp~~i~ 412 (539)
..|+.|++ ++.||.|+|..| +++++..|-..-+.-+
T Consensus 604 ~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak 641 (966)
T KOG4286|consen 604 AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAK 641 (966)
T ss_pred hhcchhhhCccceeeeeehhhcChhHHhhHhhhccccc
Confidence 57999987 789999999998 4899999976544433
No 290
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=29.45 E-value=44 Score=26.77 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCcCCCCccCCC----CC--CceecCCCCcccccc
Q 048693 310 TLSECNGCKRPA----FG--LMYRCELCNFNLHIP 338 (539)
Q Consensus 310 ~~~~C~~C~~~~----~g--~~Y~C~~C~f~lH~~ 338 (539)
+.|.|..|+..+ .| .+=+|..|=..+|..
T Consensus 3 ~~F~C~~CG~~V~p~~~g~~~RNHCP~CL~S~Hvd 37 (92)
T PF12647_consen 3 ESFTCVHCGLTVSPLAAGSAHRNHCPSCLSSLHVD 37 (92)
T ss_pred cccCccccCCCcccCCCCCCccCcCcccccccccC
Confidence 578999999975 33 468899999999988
No 291
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=29.26 E-value=36 Score=37.08 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=25.3
Q ss_pred CcCCCCccCCC-CCCceecCCCCcccccccccC
Q 048693 311 LSECNGCKRPA-FGLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 311 ~~~C~~C~~~~-~g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
-..|.+|+..+ ...+-.|..||..+|-.|...
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P 100 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKP 100 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCC
Confidence 34588888655 556789999999999999853
No 292
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.22 E-value=47 Score=33.42 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=22.0
Q ss_pred ccccccCCCCCCceeecCCCCcccCcc
Q 048693 377 KHCHACGRPADGFVYHCEEKGRNLHPC 403 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~ 403 (539)
..|..||. ..+-.|.|..|++..|.+
T Consensus 310 ~~C~~cg~-~~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 310 KTCPCCGH-LSGRLFKCPRCGFVHDRD 335 (364)
T ss_pred ccccccCC-ccceeEECCCCCCeehhh
Confidence 78999999 556679999999988854
No 293
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.12 E-value=31 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.943 Sum_probs=13.7
Q ss_pred ccccccCCC----CCCceeecCCCCc
Q 048693 377 KHCHACGRP----ADGFVYHCEEKGR 398 (539)
Q Consensus 377 ~~C~~C~~~----~~g~~Y~C~~C~f 398 (539)
.+|..||-+ ..|+.-+|..|+.
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred cccCcCCccccCCCCcCEeECCCCcC
Confidence 689999874 3688899998874
No 294
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=29.05 E-value=1e+02 Score=32.22 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHHhcccccc------CCCc-----------eEEEEEe
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTA-AAIACGLDRKA------ASEK-----------NVLIFDL 72 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~A-Aa~~~~~~~~~------~~~~-----------~vlvvDi 72 (539)
+.++|++.|..-+-.---.+.-|+..+|++.++-+--..| ||++||...-. .++. ..+=||+
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTeti~~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 216 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTETIPKVDKIVGPGNAYVTAAKRLVFGDVGIDM 216 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHHHHHHHHHHHS-EES-
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCCCCceeEEECCCcHHHHHHHHHhcCCcccCC
Confidence 5689999998765555567889999999999999998888 56788754322 0111 1344677
Q ss_pred CCceeEEEEEE
Q 048693 73 GGGTFDVSLLA 83 (539)
Q Consensus 73 GggTtdisv~~ 83 (539)
=+|-+.+.|+-
T Consensus 217 ~AGPSEv~ViA 227 (412)
T PF00815_consen 217 IAGPSEVLVIA 227 (412)
T ss_dssp -----EEEEEE
T ss_pred CCCCCceEEEE
Confidence 77777777765
No 295
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.55 E-value=41 Score=23.86 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=6.0
Q ss_pred ccccccCCCC
Q 048693 377 KHCHACGRPA 386 (539)
Q Consensus 377 ~~C~~C~~~~ 386 (539)
+.|..|++..
T Consensus 27 f~C~~C~~~l 36 (58)
T PF00412_consen 27 FKCSKCGKPL 36 (58)
T ss_dssp SBETTTTCBT
T ss_pred cccCCCCCcc
Confidence 5566666554
No 297
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.46 E-value=45 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=16.8
Q ss_pred CCCCccCCCCC------CceecCCCCcccc
Q 048693 313 ECNGCKRPAFG------LMYRCELCNFNLH 336 (539)
Q Consensus 313 ~C~~C~~~~~g------~~Y~C~~C~f~lH 336 (539)
+|.-|+..+.- .+|.|..|+|...
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEE
Confidence 57778776521 3799999997643
No 298
>PLN02377 3-ketoacyl-CoA synthase
Probab=28.26 E-value=1.7e+02 Score=31.54 Aligned_cols=55 Identities=5% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEE-cCCCChHHHHHHHHHHhC
Q 048693 173 RFEELNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIV-GGSARIPKVQQLLQEFFN 227 (539)
Q Consensus 173 e~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLv-GG~s~~p~i~~~l~~~f~ 227 (539)
.++...++..+-+.+.++++|++++.++++||.|+++ .+....|.+..+|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 3555556666677788899999999999999999873 344468999999999993
No 299
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.08 E-value=45 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCceeEeccCCCCCCCCcCcCCcccccccCCCC--CCcee-ecCCCC
Q 048693 353 FGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPA--DGFVY-HCEEKG 397 (539)
Q Consensus 353 ~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~--~g~~Y-~C~~C~ 397 (539)
..+-.|.+...|.. ..|..||... ..+.| +|..|+
T Consensus 58 ~ega~L~Ie~vp~~----------~~C~~Cg~~~~~~~~~~~~CP~Cg 95 (117)
T PRK00564 58 CKDAILDIVDEKVE----------LECKDCSHVFKPNALDYGVCEKCH 95 (117)
T ss_pred cCCCEEEEEecCCE----------EEhhhCCCccccCCccCCcCcCCC
Confidence 34456666665554 8899999754 33444 376665
No 300
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=27.84 E-value=1.4e+02 Score=30.94 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHHhcccccc------CCCc-----------eEEEEEe
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTA-AAIACGLDRKA------ASEK-----------NVLIFDL 72 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~A-Aa~~~~~~~~~------~~~~-----------~vlvvDi 72 (539)
+.++|+..|..=+..--..+.-||..+|++.++-+--..| ||++|+...-. .++. ..+=+|+
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTesi~~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 202 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGNIYVTAAKRLVSGDVGIDM 202 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcCCCCCCEeeCCchHHHHHHHHHhcCCcCccC
Confidence 5689999998432222345677899999999999988888 57788753322 0110 1224788
Q ss_pred CCceeEEEEEE
Q 048693 73 GGGTFDVSLLA 83 (539)
Q Consensus 73 GggTtdisv~~ 83 (539)
=+|-+++.|+-
T Consensus 203 ~AGPSEvlIiA 213 (390)
T cd06572 203 PAGPSEVLVIA 213 (390)
T ss_pred CCCCceEEEEe
Confidence 88888888876
No 301
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=27.25 E-value=1e+02 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.1
Q ss_pred CCceEEEEEeCCceeEEEEEEEe
Q 048693 63 SEKNVLIFDLGGGTFDVSLLAIE 85 (539)
Q Consensus 63 ~~~~vlvvDiGggTtdisv~~~~ 85 (539)
.++..++||+|+.|||+.-+.-+
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~~g 150 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIKDG 150 (330)
T ss_pred cCCceEEEecCCcccceEeecch
Confidence 36678999999999999888643
No 302
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=26.52 E-value=1.7e+02 Score=28.65 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=29.6
Q ss_pred CCceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHH
Q 048693 63 SEKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDN 107 (539)
Q Consensus 63 ~~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~ 107 (539)
+...++.+|+|.+++-+.+.+.....+.+.......--.|.-+|.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di 66 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDF 66 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeH
Confidence 467889999999999888876555455555444433444555553
No 303
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=25.95 E-value=74 Score=33.30 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHHhcccccc------CCC-----------ceEEEEEe
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTA-AAIACGLDRKA------ASE-----------KNVLIFDL 72 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~A-Aa~~~~~~~~~------~~~-----------~~vlvvDi 72 (539)
+.++|+..|.. +..---.+.-||..+|++.++-+--..| ||++||...-. .++ ...+=+|+
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 229 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIYVTAAKRLVFGVVGIDM 229 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHHcCCcCcCC
Confidence 67899999985 3333455778999999999999998888 67888764332 011 11344677
Q ss_pred CCceeEEEEEE
Q 048693 73 GGGTFDVSLLA 83 (539)
Q Consensus 73 GggTtdisv~~ 83 (539)
=+|-+++.|+-
T Consensus 230 ~AGPSEvlViA 240 (425)
T PRK00877 230 IAGPSEILVIA 240 (425)
T ss_pred CCCCceeEEEe
Confidence 77888777775
No 304
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=25.91 E-value=70 Score=33.43 Aligned_cols=17 Identities=24% Similarity=0.774 Sum_probs=15.4
Q ss_pred eecCCCCcccccccccC
Q 048693 326 YRCELCNFNLHIPCMFI 342 (539)
Q Consensus 326 Y~C~~C~f~lH~~Ca~~ 342 (539)
-.|+.|+..-|..||..
T Consensus 147 i~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 147 IGCDVCGHWCHLDCALR 163 (446)
T ss_pred EeccCCCceehhhhhcc
Confidence 78999999999999964
No 305
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=25.61 E-value=33 Score=35.86 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=23.3
Q ss_pred CcCCCCccCCCC---CCceecCCCCcccccccccC
Q 048693 311 LSECNGCKRPAF---GLMYRCELCNFNLHIPCMFI 342 (539)
Q Consensus 311 ~~~C~~C~~~~~---g~~Y~C~~C~f~lH~~Ca~~ 342 (539)
...|..|.+.-. ...--|.-|+..+|..|-..
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI 227 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGI 227 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccc
Confidence 344666666553 34588999999999999754
No 306
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=25.54 E-value=23 Score=34.10 Aligned_cols=84 Identities=18% Similarity=0.349 Sum_probs=51.0
Q ss_pred ccccccCCC-----CCCc---eeecCCCCcccCccccCCCCcccCCCeeEEEeccccccccccc--ccccccccccCCCC
Q 048693 377 KHCHACGRP-----ADGF---VYHCEEKGRNLHPCCFNLPRKLPIDSVEFELSDKQLSKKCIWR--NSKRLQETVCDRWG 446 (539)
Q Consensus 377 ~~C~~C~~~-----~~g~---~Y~C~~C~f~lH~~C~~lp~~i~~~~h~~~l~~~~~~~~c~~c--~~~c~~~~~~~~~~ 446 (539)
-+||-|--+ -.|. ...|+.|+-.=||.|..+..++...--.-++ .|..| |++|... .+...
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrw-------qcieck~csicgts--enddq 295 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRW-------QCIECKYCSICGTS--ENDDQ 295 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhhee-------eeeecceeccccCc--CCCce
Confidence 679999321 1333 3789999999999998877666554222222 23333 2444432 22233
Q ss_pred eEEeecCCCeeecccchhhhhHHh
Q 048693 447 WSYVSKCKNYHCHAFCSTEMLLEE 470 (539)
Q Consensus 447 ~~y~~~~~~~~~H~~C~~~~~~~~ 470 (539)
-.|| +.|+-.+|..|..-.+++.
T Consensus 296 llfc-ddcdrgyhmyclsppm~ep 318 (336)
T KOG1244|consen 296 LLFC-DDCDRGYHMYCLSPPMVEP 318 (336)
T ss_pred eEee-cccCCceeeEecCCCcCCC
Confidence 4454 4568888999988776543
No 307
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.46 E-value=44 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=18.6
Q ss_pred CCCcCCCCccCCC--CCCceecCCCCccccccccc
Q 048693 309 KTLSECNGCKRPA--FGLMYRCELCNFNLHIPCMF 341 (539)
Q Consensus 309 ~~~~~C~~C~~~~--~g~~Y~C~~C~f~lH~~Ca~ 341 (539)
.....|..|.... ...+++|..|+-.+...|..
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 4566799999986 34459999999999999974
No 308
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=25.04 E-value=2e+02 Score=31.40 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=43.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHH-HcCCceeeeechhHHHHHHhccccccCCCceEEEEEeCCceeE
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGA-MAGLNVLNIISEPTAAAIACGLDRKAASEKNVLIFDLGGGTFD 78 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~-~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~vlvvDiGggTtd 78 (539)
.+.|+++|...... |.+++. ..|++.+..-+|..|+.++-++.+.. +..++++=.|-|.+.
T Consensus 16 v~~vFG~pG~~~~~----l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~t--g~gv~~~t~GPG~~n 77 (539)
T TIGR03393 16 IDHLFGVPGDYNLQ----FLDHVIDSPDICWVGCANELNAAYAADGYARCK--GAAALLTTFGVGELS 77 (539)
T ss_pred CCEEEECCCCchHH----HHHHHhhCCCCcEeccCCcccHHHHhhhhhhhc--CceEEEEecCccHHH
Confidence 45789999887755 444443 35899999999999998888777765 235666666777543
No 309
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=24.75 E-value=47 Score=36.20 Aligned_cols=75 Identities=24% Similarity=0.480 Sum_probs=48.8
Q ss_pred CCCCccCCCC---CCceecCCCCcccccccccCCCCCCCCCCC-CCCceeEeccCCCCCCCCcCcCCcccccccCCCC-C
Q 048693 313 ECNGCKRPAF---GLMYRCELCNFNLHIPCMFIYRKPTAKHEF-FGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPA-D 387 (539)
Q Consensus 313 ~C~~C~~~~~---g~~Y~C~~C~f~lH~~Ca~~p~~~~~~h~~-~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~-~ 387 (539)
.|-.|+..+. |..-.|+.|.-..|..|... .+.|-. .+. +.|. .-+.|.+||... -
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~----~~~~~~l~~g--------------WrC~-~crvCe~c~~~gD~ 80 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTS----WAQHAVLSGG--------------WRCP-SCRVCEACGTTGDP 80 (694)
T ss_pred hhhhhccccccccCcchhhhhhcccCCcchhhH----HHhHHHhcCC--------------cccC-CceeeeeccccCCc
Confidence 3666666653 44689999999999999753 133321 111 1111 127899999643 2
Q ss_pred CceeecCCCCcccCccccC
Q 048693 388 GFVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 388 g~~Y~C~~C~f~lH~~C~~ 406 (539)
.-+-.|..|+-.+|-.|..
T Consensus 81 ~kf~~Ck~cDvsyh~yc~~ 99 (694)
T KOG4443|consen 81 KKFLLCKRCDVSYHCYCQK 99 (694)
T ss_pred ccccccccccccccccccC
Confidence 3457899999999999975
No 310
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=24.43 E-value=3.7e+02 Score=26.81 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHcCCceeeeechhHHHHHHh
Q 048693 35 AMAGLNVLNIISEPTAAAIAC 55 (539)
Q Consensus 35 ~~AGl~~~~li~Ep~AAa~~~ 55 (539)
+..|++.+.+.++-.|+|++-
T Consensus 87 ~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 87 QNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred HhcCCCeEEEEecHHHHHcCC
Confidence 346888899999999999983
No 311
>PRK13321 pantothenate kinase; Reviewed
Probab=24.40 E-value=2.8e+02 Score=26.86 Aligned_cols=46 Identities=11% Similarity=0.318 Sum_probs=26.2
Q ss_pred EEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHH
Q 048693 67 VLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 113 (539)
Q Consensus 67 vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 113 (539)
++.+|+|++++-+.++. ++.............-+...+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999997 32222111112222334555555555544
No 312
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=23.81 E-value=4.2e+02 Score=28.48 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=32.1
Q ss_pred eEEEEEeCCceeEEEEEEEecCe-eeEEEecCCCCCcHHHHHHHH
Q 048693 66 NVLIFDLGGGTFDVSLLAIEKGI-FKVKATAGDTHLGGEDFDNRM 109 (539)
Q Consensus 66 ~vlvvDiGggTtdisv~~~~~~~-~~v~~~~~~~~lGG~~id~~l 109 (539)
+=+-+|+|.+++-.-++.+..+. .....+....--||+++|.+.
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~ 209 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRD 209 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHH
Confidence 34669999999998888887654 344445555667999999764
No 313
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=23.65 E-value=28 Score=40.63 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=38.8
Q ss_pred CCCCcccccccccccCCCCcCCCCccCCCCCCc--eecCCCCcccccccc
Q 048693 293 GGHTSHQAHYLQLKNHKTLSECNGCKRPAFGLM--YRCELCNFNLHIPCM 340 (539)
Q Consensus 293 ~~h~sHp~H~L~l~~~~~~~~C~~C~~~~~g~~--Y~C~~C~f~lH~~Ca 340 (539)
..+-.|+.|++.-..+..++.|..|.++.++.+ |-|..|.+-+|..=.
T Consensus 1202 ~~~~v~~~~~~~~~l~~~~~~~~~~~k~l~~~~~~ye~~~~~~~~~~d~~ 1251 (1317)
T KOG0612|consen 1202 PNSLVHKGHEFIPFLYHFPTNCEACIKPLWHMFKAYECRRCHIKCHKDHM 1251 (1317)
T ss_pred chhhcCCCCcchHHHhhcchhHHHHhhhcccchhHHHHHHhhcccccccc
Confidence 456667788887777788999999999997765 999999988886543
No 314
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.62 E-value=1.6e+02 Score=25.49 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=28.3
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCceeeee---chhHHHHHHh
Q 048693 17 TVPAYFTNSQRQATKDAGAMAGLNVLNII---SEPTAAAIAC 55 (539)
Q Consensus 17 tVP~~~~~~~r~~l~~aa~~AGl~~~~li---~Ep~AAa~~~ 55 (539)
|.-.-.+.+.+++++++++..|-+.+.++ .|+++|.++.
T Consensus 44 taagaMDLEnQ~rvk~~aEk~g~enlvVvlG~aeaE~a~laA 85 (150)
T PF04723_consen 44 TAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAEAEAAGLAA 85 (150)
T ss_pred cccccccHHHHHHHHHHHHhcCCccEEEEecCCChhhhhhhh
Confidence 33344566778888888888888776665 6788887775
No 315
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=23.61 E-value=3e+02 Score=26.06 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHH
Q 048693 203 VDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 248 (539)
Q Consensus 203 i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~ 248 (539)
.+.|+| |.+-+..+++.|++.| |.+|.-..-..-..+.|++..
T Consensus 175 AeaIiL--GCAGms~la~~Lq~~~-gvPVIDgv~Aav~~a~~L~~~ 217 (230)
T COG4126 175 AEAIIL--GCAGMSDLADQLQKAF-GVPVIDGVAAAVKLAEGLLGM 217 (230)
T ss_pred CCEEEE--cCccHHHHHHHHHHHh-CCCcccchHHHHHHHHHHHhh
Confidence 456666 3344667799999999 676644433233344444433
No 316
>COG1773 Rubredoxin [Energy production and conversion]
Probab=23.52 E-value=74 Score=22.91 Aligned_cols=14 Identities=21% Similarity=0.778 Sum_probs=11.8
Q ss_pred ceecCCCCcccccc
Q 048693 325 MYRCELCNFNLHIP 338 (539)
Q Consensus 325 ~Y~C~~C~f~lH~~ 338 (539)
+|+|+.|+|...+.
T Consensus 3 ~~~C~~CG~vYd~e 16 (55)
T COG1773 3 RWRCSVCGYVYDPE 16 (55)
T ss_pred ceEecCCceEeccc
Confidence 69999999988754
No 317
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.44 E-value=47 Score=19.69 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=12.0
Q ss_pred ccccccCCCCCCceeecCCCCc
Q 048693 377 KHCHACGRPADGFVYHCEEKGR 398 (539)
Q Consensus 377 ~~C~~C~~~~~g~~Y~C~~C~f 398 (539)
.+|..||.....-.=.|..|+-
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 4577777654333333666654
No 318
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=3.1e+02 Score=30.73 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhCCC--cccc---cCCcchhhhchHHHHHH
Q 048693 201 SSVDDVVIVGGSARIPKVQQLLQEFFNGK--RLCK---NINPDEAVAYGAAVQAA 250 (539)
Q Consensus 201 ~~i~~ViLvGG~s~~p~i~~~l~~~f~~~--~v~~---~~~p~~avA~GAal~a~ 250 (539)
..++.|.|+||-....+|.+.+.+.+.+. ++.. ....|-.++.|=++.++
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHHH
Confidence 35789999999999999999999988533 3322 22447789999888773
No 319
>PRK12408 glucokinase; Provisional
Probab=23.23 E-value=2.5e+02 Score=28.52 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=27.1
Q ss_pred HcCCceeeeechhHHHHHHhcccc---------ccCCC-ceEEEEEeCCce
Q 048693 36 MAGLNVLNIISEPTAAAIACGLDR---------KAASE-KNVLIFDLGGGT 76 (539)
Q Consensus 36 ~AGl~~~~li~Ep~AAa~~~~~~~---------~~~~~-~~vlvvDiGggT 76 (539)
..|++.+.++++-.|+|++-.... ..... ..++++-+|.|-
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGi 157 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGL 157 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcc
Confidence 458878999999999999853331 11112 467777777653
No 320
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.13 E-value=1.5e+02 Score=28.68 Aligned_cols=42 Identities=17% Similarity=0.365 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHH
Q 048693 202 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 247 (539)
Q Consensus 202 ~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal 247 (539)
+++.|+| |.+..|++.+.+++.++ .++ .-+||.+++|+=+.-
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHHH
Confidence 4778777 99999999999999984 333 346888777765543
No 321
>PRK00865 glutamate racemase; Provisional
Probab=22.90 E-value=2.3e+02 Score=27.58 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHHHHHHhCCCcccccCCcchhhhchHHHH
Q 048693 187 KHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 248 (539)
Q Consensus 187 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAal~ 248 (539)
+.+++.++... ...+|.|+| |.+.+|++.+.+++.++ ..+ ..+||.+++|.-+.-+
T Consensus 164 ~~l~~~l~~l~--~~g~d~iIL--GCTh~p~l~~~i~~~~~-~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 164 EVLREYLAPLL--AAGIDTLVL--GCTHYPLLKPEIQQVLG-EGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred HHHHHHHHHHh--cCCCCEEEE--CCcCHHHHHHHHHHHcC-CCC-EEECCHHHHHHHHHHH
Confidence 34444444331 235788877 88999999999999984 222 3358887777655543
No 322
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.90 E-value=56 Score=32.86 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=23.2
Q ss_pred CCCcCCCCccCCCCCCceecCCCCcccccc
Q 048693 309 KTLSECNGCKRPAFGLMYRCELCNFNLHIP 338 (539)
Q Consensus 309 ~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~ 338 (539)
.....|..|+. ..+..|.|..|++..|-.
T Consensus 307 ~tS~~C~~cg~-~~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 307 YTSKTCPCCGH-LSGRLFKCPRCGFVHDRD 335 (364)
T ss_pred CCcccccccCC-ccceeEECCCCCCeehhh
Confidence 34567999999 666779999999988854
No 323
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.86 E-value=3.4e+02 Score=26.97 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=35.6
Q ss_pred CceEEEEEeCCceeEEEEEEEecCeeeEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 048693 64 EKNVLIFDLGGGTFDVSLLAIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFK 118 (539)
Q Consensus 64 ~~~vlvvDiGggTtdisv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 118 (539)
...++-+|+|+.++.++++......+..........-....+-+.|.+.+.+...
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 5678999999999999999877664433333332223335666666666655444
No 324
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.83 E-value=71 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=14.4
Q ss_pred ccccccCCCC--CCceeecCCCC
Q 048693 377 KHCHACGRPA--DGFVYHCEEKG 397 (539)
Q Consensus 377 ~~C~~C~~~~--~g~~Y~C~~C~ 397 (539)
..|..||... ..+.+.|..|+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cg 93 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCH 93 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCc
Confidence 8899999754 34456666665
No 325
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=22.78 E-value=55 Score=20.54 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=16.0
Q ss_pred CCCCccCCCC---C-CceecCCCCcc
Q 048693 313 ECNGCKRPAF---G-LMYRCELCNFN 334 (539)
Q Consensus 313 ~C~~C~~~~~---g-~~Y~C~~C~f~ 334 (539)
.|.+|+..+. | ..++|+.|+..
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~~v 28 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQTV 28 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCCeE
Confidence 5889988762 2 33999999754
No 326
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=22.69 E-value=50 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred ccchhhhhHHhhhhhhhccCchHHHHHHHhhhcc
Q 048693 505 KYLMIAKGFFQILVSSFIGDPTTFLASLILGLVM 538 (539)
Q Consensus 505 ~~~~i~~~~~~~i~~~~~gdpt~~~~~~~~~~~~ 538 (539)
+.-+..+...=-++++|||-|.|++.|+..|+++
T Consensus 61 ~~F~~sk~~~Yr~Ls~ilaiP~A~~~Gi~FA~ls 94 (148)
T PF01146_consen 61 KTFEVSKYWCYRILSLILAIPLAFLWGILFACLS 94 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667778999999999999999988763
No 327
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=22.31 E-value=3.3e+02 Score=22.91 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEccccCCceeEEEEeHHHHHHHHH---HHH
Q 048693 106 DNRMVNHFIQEFKRKTEKDISGSPRAAQRLRKNCERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNM---DLF 182 (539)
Q Consensus 106 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~e~e~~~~---~~~ 182 (539)
++.|.+.+..-|.+.++..+ .......+|.++++.....++..... -...+.+.++.++++.+.. .+.
T Consensus 5 E~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~--------aPN~y~V~Ls~~D~~~l~~~~~~l~ 75 (116)
T PF12401_consen 5 ERRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL--------APNVYTVELSPEDYERLSPWGDRLA 75 (116)
T ss_dssp ----SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE--------cCeeEEEEECHHHHHHHhhhHHHHH
Confidence 33333444444454444432 33455567777777765554443321 1235678899999998864 567
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 048693 183 RKCIKHVDMCLRTGKTDK 200 (539)
Q Consensus 183 ~~i~~~i~~~l~~~~~~~ 200 (539)
+++.+.+.+...+.+...
T Consensus 76 ~el~~~l~~~a~~qgy~~ 93 (116)
T PF12401_consen 76 RELADYLAEHAREQGYTF 93 (116)
T ss_dssp HHHHHHHHHHHHHHT-B-
T ss_pred HHHHHHHHHHHHHCCCee
Confidence 777777777777655443
No 328
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=22.16 E-value=1e+02 Score=30.36 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=49.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHHhcccccc---------------------CCCceEEE
Q 048693 12 SNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTA-AAIACGLDRKA---------------------ASEKNVLI 69 (539)
Q Consensus 12 ~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~A-Aa~~~~~~~~~---------------------~~~~~vlv 69 (539)
.++|++.|..=+-.---.+.-+|+.+|...+.+..-..| ||++|+.+.-. +..+..+-
T Consensus 158 k~vV~atPprKDG~v~pEvvY~A~k~Ga~~I~lAGGAQAiAAMAyGt~~~PKV~KIfGPGNQfVTAAKM~vQNd~~Alvs 237 (446)
T KOG2697|consen 158 KTVVLATPPRKDGSVCPEVVYCAKKAGATHILLAGGAQAIAAMAYGTDSCPKVEKIFGPGNQFVTAAKMIVQNDYEALVS 237 (446)
T ss_pred ceEEEecCCCcCCccCcceeeehhhcChhheeccccHHHHHHHHhccccCcchhhhcCCchhhhhhhhhheeccccceEE
Confidence 578888887766555555666788889888888777766 56778754321 12244667
Q ss_pred EEeCCceeEEEEEE
Q 048693 70 FDLGGGTFDVSLLA 83 (539)
Q Consensus 70 vDiGggTtdisv~~ 83 (539)
+|+-+|-..+-++.
T Consensus 238 IDmPAGPSEVLVIA 251 (446)
T KOG2697|consen 238 IDMPAGPSEVLVIA 251 (446)
T ss_pred eccCCCCceEEEEe
Confidence 89999988877765
No 329
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=2.2e+02 Score=28.94 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQ 219 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~ 219 (539)
..+..++.|...|+++|++++.+..+||.|-.+=|-+..+.+.
T Consensus 46 Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~ 88 (342)
T COG0533 46 ASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALL 88 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHH
Confidence 4456788999999999999999999999999999888888775
No 330
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.75 E-value=78 Score=26.55 Aligned_cols=35 Identities=9% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCceeEeccCCCCCCCCcCcCCcccccccCCCC--CCceeecCCCC
Q 048693 353 FGNFTFKFLPSLGACSTKDCIDCNKHCHACGRPA--DGFVYHCEEKG 397 (539)
Q Consensus 353 ~~~h~l~l~~~~~~~~~~~~~~~~~~C~~C~~~~--~g~~Y~C~~C~ 397 (539)
..+-.|.+...|.. ..|..||... ..+.|.|..|+
T Consensus 57 ~egA~L~I~~vp~~----------~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 57 AQGCDLHIVYKPAQ----------AWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred cCCCEEEEEeeCcE----------EEcccCCCEEecCCcCccCcCCC
Confidence 34456666555544 8899999743 34566687776
No 331
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.37 E-value=1.6e+02 Score=30.06 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQ 219 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~ 219 (539)
......+.|...|+++|++++.+..+|+.|-++-|-+..+.++
T Consensus 45 a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~Lr 87 (345)
T PTZ00340 45 TAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLS 87 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHH
Confidence 4456778889999999999999999999999999888777775
No 332
>PHA00626 hypothetical protein
Probab=21.25 E-value=83 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.8
Q ss_pred CceecCCCCcccccc
Q 048693 324 LMYRCELCNFNLHIP 338 (539)
Q Consensus 324 ~~Y~C~~C~f~lH~~ 338 (539)
.+|.|..|+|..-..
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 569999999876544
No 333
>PRK14878 UGMP family protein; Provisional
Probab=21.17 E-value=1.3e+02 Score=30.51 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQ 219 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~ 219 (539)
......+.+...++++|++++++..+||.|.++-|-+..+.++
T Consensus 40 ~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lr 82 (323)
T PRK14878 40 AAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALR 82 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchH
Confidence 3345667788889999999999999999999998776666665
No 334
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.16 E-value=24 Score=38.78 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.2
Q ss_pred ccccccCCCCCC---ceeecCCCCcccCccccC
Q 048693 377 KHCHACGRPADG---FVYHCEEKGRNLHPCCFN 406 (539)
Q Consensus 377 ~~C~~C~~~~~g---~~Y~C~~C~f~lH~~C~~ 406 (539)
..|+.|++=+.| --|+|..|.++.|..|..
T Consensus 170 t~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~ 202 (694)
T KOG0694|consen 170 TFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHV 202 (694)
T ss_pred chhhhhhhheeccCCCceEEeeeeehHhhhhHH
Confidence 679999985444 369999999999988764
No 335
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=22 Score=38.49 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=33.7
Q ss_pred cccccccCCCCcCCCCccCCCCCCc---eecCCCCcccccccc
Q 048693 301 HYLQLKNHKTLSECNGCKRPAFGLM---YRCELCNFNLHIPCM 340 (539)
Q Consensus 301 H~L~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca 340 (539)
|-+.......|.+|.-|...++|.. .+|.+|....|..|-
T Consensus 173 hnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ 215 (1283)
T KOG1011|consen 173 HNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCR 215 (1283)
T ss_pred CceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHH
Confidence 5566666778999999999888754 999999999999994
No 336
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=20.86 E-value=75 Score=33.06 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=50.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHHhcccccc------CCC-----------ceEEEEEe
Q 048693 11 VSNAVVTVPAYFTNSQRQATKDAGAMAGLNVLNIISEPTA-AAIACGLDRKA------ASE-----------KNVLIFDL 72 (539)
Q Consensus 11 v~~vvitVP~~~~~~~r~~l~~aa~~AGl~~~~li~Ep~A-Aa~~~~~~~~~------~~~-----------~~vlvvDi 72 (539)
++++|++.|..=+. --..+.-||+.+|++.++-+--..| ||++||...-. .++ ...+=+|+
T Consensus 147 v~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTetV~~VdkIvGPGN~yVtaAKr~v~g~V~ID~ 225 (425)
T COG0141 147 VEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTETVPKVDKIVGPGNAYVTAAKRLVSGVVGIDM 225 (425)
T ss_pred CceEEEECCCCCCC-CCHHHHHHHHHhCcHHHHHccCHHHHHHHHccCCcCCccCeeeCCCcHHHHHHHHHhhCCcccCC
Confidence 66899999987432 3456788999999999999988887 57788743322 111 12445777
Q ss_pred CCceeEEEEEE
Q 048693 73 GGGTFDVSLLA 83 (539)
Q Consensus 73 GggTtdisv~~ 83 (539)
=+|-+.+-|+-
T Consensus 226 ~AGPSEvlViA 236 (425)
T COG0141 226 IAGPSEVLVIA 236 (425)
T ss_pred CCCCceEEEEe
Confidence 77777777765
No 337
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.66 E-value=1.5e+02 Score=29.83 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQL 221 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~ 221 (539)
......+.+...|+++|++++.+..+|+.|.++-|-+..+++|--
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig 89 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVG 89 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHH
Confidence 345667888889999999999999999999999999988888743
No 338
>PTZ00288 glucokinase 1; Provisional
Probab=20.65 E-value=5.6e+02 Score=26.84 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=17.0
Q ss_pred cCCceeeeechhHHHHHHh
Q 048693 37 AGLNVLNIISEPTAAAIAC 55 (539)
Q Consensus 37 AGl~~~~li~Ep~AAa~~~ 55 (539)
.|++.+.+|++=+|.|++.
T Consensus 128 ~~~~~~~liNDfeA~aygi 146 (405)
T PTZ00288 128 FPPGRSALLNDLEAGAYGV 146 (405)
T ss_pred cCCCeEEEEEhHHHHhCcc
Confidence 6888999999999998876
No 339
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=20.35 E-value=1.6e+02 Score=29.65 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQ 219 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~ 219 (539)
......+.+...|++.|++++.+..+||.|.++-|-+..++++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 3345667788889999999999999999999998876666665
No 340
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.21 E-value=1.7e+02 Score=26.63 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCCCh-----HH---HHHHHHHHhCCCcccccCCcchhhhchHHHHHHHHcC
Q 048693 200 KSSVDDVVIVGGSARI-----PK---VQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 254 (539)
Q Consensus 200 ~~~i~~ViLvGG~s~~-----p~---i~~~l~~~f~~~~v~~~~~p~~avA~GAal~a~~~~~ 254 (539)
..++|.|+|.||.... ++ +.+.|+.... ..-|-.++..|.-+.+..+.|
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~------~~~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA------AGKPVLGICLGHQLLARALGG 100 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH------CCCCEEEECccHHHHHHHhCC
Confidence 4568999999998654 33 4445555542 125778899999988887765
No 341
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=20.11 E-value=1.5e+02 Score=29.60 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCChHHHHH
Q 048693 177 LNMDLFRKCIKHVDMCLRTGKTDKSSVDDVVIVGGSARIPKVQQ 220 (539)
Q Consensus 177 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~ 220 (539)
......+.+...|+++|++++.+..+|+.|.++-|-+..+.++-
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrv 87 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRV 87 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHH
Confidence 34556788888999999999999999999999999888888763
No 342
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=20.06 E-value=2e+02 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEE---cCC---CChHHHHHHHHHHhCCCc
Q 048693 179 MDLFRKCIKHVDMCLRTGKTDKSSVDDVVIV---GGS---ARIPKVQQLLQEFFNGKR 230 (539)
Q Consensus 179 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLv---GG~---s~~p~i~~~l~~~f~~~~ 230 (539)
...++.+.+.|++.+++. +.++.++++ ||+ +-.|.|-+.+++.|++..
T Consensus 104 ~~~~~~~~~~ir~~~e~~----d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~ 157 (216)
T PF00091_consen 104 EEALEEILEQIRKEIEKC----DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKP 157 (216)
T ss_dssp HHHHHHHHHHHHHHHHTS----TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSE
T ss_pred cccccccccccchhhccc----cccccceecccccceeccccccccchhhhccccccc
Confidence 456677777788887654 357788875 444 456999999999997654
Done!