BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048694
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
RL +G V + GD+ H P IGQGG A +EDAVVL Q I AL EY +
Sbjct: 297 RLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFR-----QTRDIAAALREYEAQ 351
Query: 170 RRTR 173
R R
Sbjct: 352 RCDR 355
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
RL +G V + GD+ H P IGQGG A EDAVVL Q I AL EY +
Sbjct: 297 RLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVLG-----AVFRQTRDIAAALREYEAQ 351
Query: 170 RRTR 173
R R
Sbjct: 352 RCDR 355
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T+ GD+ H+M PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 346
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T+ GD+ H+M PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 366
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T+ GD+ H+M PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 366
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T+ GD+ H+M PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 366
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERR 171
+G +T+ GD+ H+M P G S I D + LA LARN + AL EY + RR
Sbjct: 302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNA-----DVAAALREYEEARR 355
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 86 KDCDLSSLSFTHFR---YRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAV 142
+ D ++S H R + PW + TVT+ GD++H P G G + + DA+
Sbjct: 287 QQSDXENISPLHLRSXPHLLPW-------KSSTVTLLGDAIHNXTPXTGSGANTALRDAL 339
Query: 143 VLARCLARNTMPQYEKIGEALDEYVKERR 171
+L + LA + +E++ +A+ +Y ++ R
Sbjct: 340 LLTQKLA-SVASGHEELVKAISDYEQQXR 367
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T GD+ H+ PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 346
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 116 VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
+T GD+ H+ PF GQG ++G+ DA++L+ LA ++ I EA+ Y ++
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADG---KFNSIEEAVKNYEQQ 367
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERR 171
+G +T+ GD+ H+ P G S I D + LA LARN + AL EY + RR
Sbjct: 302 RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALARNA-----DVAAALREYEEARR 355
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
R + G V +AGD+ HV P GQG + G++DAV L LA + E LD Y E
Sbjct: 318 RYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSE--ELLDTYHDE 375
Query: 170 R 170
R
Sbjct: 376 R 376
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKER 170
++G V +AGDS H+ P GQG + I+DAV L L + E LD Y ER
Sbjct: 275 RRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKL--GAVVNGTATEELLDSYHSER 331
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLA 149
++G V +AGDS HV P GQG + ++D+V L LA
Sbjct: 276 RRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLA 313
>pdb|3V10|A Chain A, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
pdb|3V10|B Chain B, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
Length = 321
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 31 AFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRSLTLETIKNFPAEKLRNGKDCDL 90
AF+D NG V+ + T+P ND++ +RSL K K +NGK+ L
Sbjct: 33 AFSDMNNGQK-----VKFKPGDFFDLTLPSNDEVSLRSLRAMGSKMPVLAKDKNGKEITL 87
Query: 91 SSLSF--THFRYRAPWDILLGRLQKGTVTV 118
L+F +H + D+L GT+ +
Sbjct: 88 GELTFNGSHIHFEFMEDVLQLENVTGTINL 117
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S T F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLTSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKE 169
R ++G V +AGD+ V P G G+A + D LA LA + Q + LD Y E
Sbjct: 297 RWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLA--AVLQGQAGAGLLDTYEDE 354
Query: 170 RR 171
R+
Sbjct: 355 RK 356
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
F ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 FANHPRGFALCSQRSATRSRYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3C65|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvrc 5'
Endonuclease Domain
Length = 226
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 2 LIGCDGASSVVADFLKLKP-KKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPI 60
+ G D S++V FL KP KK + V+ PN + +E+VR R +L +P+
Sbjct: 25 IYGADPVSALVV-FLDGKPAKKEYRKYKVKTVAG-PNDYETXREVVRRRYTRVLKEGLPL 82
Query: 61 NDKLLI 66
D ++I
Sbjct: 83 PDLIII 88
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 35/187 (18%)
Query: 2 LIGCDGA-----SSVVADFLKLKPK-KAFASCAVRA----------FTDYPNGHGLPQEI 45
+ GCDGA S+ A+ LK+ + F + A + ++P G L +
Sbjct: 155 IAGCDGAHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQR 214
Query: 46 VRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNGKDCDLSSLSFTHFR 99
R+ + + +P+ +K+ S E PAE KL G + S F
Sbjct: 215 SATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSF- 271
Query: 100 YRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKI 159
++ +Q G + +AGD+ H++ P +G + D L R L + E
Sbjct: 272 -------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYR---EGR 321
Query: 160 GEALDEY 166
GE L+ Y
Sbjct: 322 GELLERY 328
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSQYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 88 CDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147
C + + RY L +G V + GD+ H M P + QG + +A L++
Sbjct: 255 CLIEAAKLKTARYDKAETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD 314
Query: 148 LARNT 152
L +
Sbjct: 315 LEEGS 319
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYFV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 88 CDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147
C + + RY L +G V + GD+ H M P + QG + +A L++
Sbjct: 255 CLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD 314
Query: 148 LARNT 152
L +
Sbjct: 315 LEEGS 319
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 108 LGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152
L +G V + GD+ H M P + QG + +A L++ L +
Sbjct: 275 LDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGS 319
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFP---AEKLRNG 85
+ ++P G L + R+ + + +P+++K+ S E P AEKL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLDLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 88 CDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147
C + + RY L +G V + GD+ H M P + QG + +A L++
Sbjct: 291 CLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD 350
Query: 148 LARNT 152
L +
Sbjct: 351 LEEGS 355
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYAV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLIRS---LTLETIKNFPAE---KLRNG 85
+ ++P G L + R+ + + +P+ +K+ S E PAE KL G
Sbjct: 201 YANHPRGFALCSQRSATRSRYYV--QVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG 258
Query: 86 KDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145
+ S F ++ +Q G + +AGD+ H++ P +G + D L
Sbjct: 259 PSLEKSIAPLRSF--------VVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLY 310
Query: 146 RCLARNTMPQYEKIGEALDEY 166
R L + E GE L+ Y
Sbjct: 311 RLLLKAYR---EGRGELLERY 328
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 102 APWDILLGRLQKGTVTVAGDSMHVMAPFIGQGG 134
A W++LLGR T +++ + + APF G
Sbjct: 115 ASWNVLLGRRDSTTASLSSANSDLPAPFFNLSG 147
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 29/198 (14%)
Query: 2 LIGCDGASSVVA-----DFLKLKPKKAFASCAVRAFTDYPN-----------GHGL--PQ 43
++GCDGA S V + +A+ V A TD+P+ G+ L P+
Sbjct: 203 VVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPR 262
Query: 44 EIVRMRNDHILCGTIPINDKLLIRSLTLETIKNFPAEKLR----NGKDCDLSSLSFTHFR 99
E + ++ + ++++ R++T+E + L K+ S+ R
Sbjct: 263 EGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEVKNVPWWSVYEIGQR 322
Query: 100 YRAPWDILLGRLQKGT-----VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMP 154
A +D ++ + V +AGD+ H +P GQG + ++D+ L LA
Sbjct: 323 ICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRK 382
Query: 155 QYEKIGEALDEYVKERRT 172
Q E L Y ER+
Sbjct: 383 QCAP--ELLHTYSSERQV 398
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 105 DILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151
D + R+ G V + GD+ P GG+ +DA LA +N
Sbjct: 290 DATVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,506,742
Number of Sequences: 62578
Number of extensions: 215459
Number of successful extensions: 588
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 47
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)