Query 048694
Match_columns 193
No_of_seqs 130 out of 1257
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06475 salicylate hydroxylas 100.0 4.2E-31 9E-36 212.4 16.6 170 1-182 158-354 (400)
2 TIGR03219 salicylate_mono sali 100.0 6.4E-31 1.4E-35 212.2 17.0 179 1-186 150-371 (414)
3 PLN02927 antheraxanthin epoxid 100.0 3.2E-30 7E-35 214.9 19.0 184 1-188 239-446 (668)
4 PRK06753 hypothetical protein; 100.0 2.8E-29 6.1E-34 200.0 18.0 175 1-186 143-336 (373)
5 KOG2614 Kynurenine 3-monooxyge 100.0 4.6E-30 1E-34 198.8 11.3 178 1-178 154-365 (420)
6 PRK05868 hypothetical protein; 100.0 1.2E-28 2.6E-33 196.3 15.9 169 1-181 151-345 (372)
7 PRK07538 hypothetical protein; 100.0 2.1E-28 4.6E-33 197.5 16.9 170 1-183 156-361 (413)
8 PRK08163 salicylate hydroxylas 100.0 4.3E-28 9.4E-33 194.6 17.2 175 1-186 157-354 (396)
9 PRK07236 hypothetical protein; 100.0 3.7E-28 7.9E-33 194.5 16.1 175 1-186 145-373 (386)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.9E-28 4.1E-33 196.2 13.6 182 1-186 153-348 (387)
11 PTZ00367 squalene epoxidase; P 100.0 1.2E-27 2.5E-32 198.1 18.5 181 1-186 210-419 (567)
12 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.2E-27 4.9E-32 197.2 16.2 182 1-186 165-356 (538)
13 PRK07588 hypothetical protein; 100.0 1.6E-27 3.4E-32 191.1 14.3 176 1-186 149-347 (391)
14 PRK06617 2-octaprenyl-6-methox 100.0 3.7E-27 8.1E-32 188.0 16.0 169 1-186 151-336 (374)
15 PRK06847 hypothetical protein; 100.0 4E-27 8.7E-32 187.8 15.9 174 1-186 154-349 (375)
16 PRK08850 2-octaprenyl-6-methox 100.0 1.7E-27 3.7E-32 191.7 13.6 178 1-186 159-355 (405)
17 PRK08013 oxidoreductase; Provi 99.9 5.3E-27 1.1E-31 188.6 15.6 182 1-186 159-355 (400)
18 PRK05714 2-octaprenyl-3-methyl 99.9 3.5E-27 7.5E-32 190.0 13.1 176 1-186 159-358 (405)
19 PLN02985 squalene monooxygenas 99.9 3.6E-26 7.8E-31 188.1 18.0 179 1-187 199-401 (514)
20 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 2.2E-26 4.7E-31 184.4 16.2 77 107-186 272-348 (390)
21 PF01494 FAD_binding_3: FAD bi 99.9 1.1E-27 2.4E-32 188.8 8.6 73 107-181 284-356 (356)
22 PRK06184 hypothetical protein; 99.9 8.1E-27 1.8E-31 192.5 12.8 180 1-186 159-350 (502)
23 PRK07045 putative monooxygenas 99.9 5.4E-26 1.2E-30 182.1 17.2 178 1-186 156-356 (388)
24 PRK08294 phenol 2-monooxygenas 99.9 3.6E-26 7.8E-31 192.3 15.4 181 1-186 201-410 (634)
25 TIGR01989 COQ6 Ubiquinone bios 99.9 5.4E-26 1.2E-30 184.6 15.9 80 107-186 326-406 (437)
26 PRK08849 2-octaprenyl-3-methyl 99.9 1.2E-25 2.6E-30 179.9 15.8 77 106-186 271-347 (384)
27 PRK08132 FAD-dependent oxidore 99.9 6.9E-26 1.5E-30 188.7 14.7 179 1-186 176-369 (547)
28 PRK07190 hypothetical protein; 99.9 1.5E-25 3.3E-30 183.7 14.7 179 1-186 156-345 (487)
29 PRK06126 hypothetical protein; 99.9 8.6E-26 1.9E-30 188.1 13.0 182 1-186 179-373 (545)
30 PRK06185 hypothetical protein; 99.9 3E-25 6.4E-30 178.9 15.4 178 1-186 160-355 (407)
31 PRK08244 hypothetical protein; 99.9 1E-25 2.2E-30 185.6 12.9 180 1-185 150-341 (493)
32 PRK08243 4-hydroxybenzoate 3-m 99.9 2.4E-25 5.2E-30 178.6 14.7 77 107-186 272-348 (392)
33 PRK07364 2-octaprenyl-6-methox 99.9 1.4E-25 3E-30 181.2 13.3 178 1-186 172-367 (415)
34 PRK06996 hypothetical protein; 99.9 2.7E-25 5.8E-30 178.6 14.7 177 1-186 165-358 (398)
35 PRK07333 2-octaprenyl-6-methox 99.9 2.1E-25 4.6E-30 179.4 13.6 183 1-186 158-353 (403)
36 PRK09126 hypothetical protein; 99.9 1.7E-25 3.7E-30 179.4 12.3 178 1-186 158-353 (392)
37 PRK07494 2-octaprenyl-6-methox 99.9 5.1E-25 1.1E-29 176.5 14.5 176 1-186 158-350 (388)
38 TIGR01984 UbiH 2-polyprenyl-6- 99.9 5E-25 1.1E-29 176.1 12.7 177 1-186 153-346 (382)
39 TIGR01988 Ubi-OHases Ubiquinon 99.9 8.5E-25 1.8E-29 174.8 13.3 179 1-186 154-349 (385)
40 PRK07608 ubiquinone biosynthes 99.9 6.8E-25 1.5E-29 175.7 12.6 184 1-186 158-352 (388)
41 PRK06834 hypothetical protein; 99.9 8.1E-25 1.8E-29 179.5 13.1 78 105-184 256-333 (488)
42 PRK08020 ubiF 2-octaprenyl-3-m 99.9 4.8E-24 1E-28 171.0 16.0 174 1-186 160-354 (391)
43 PRK08773 2-octaprenyl-3-methyl 99.9 1.6E-24 3.4E-29 173.9 12.6 178 1-186 160-355 (392)
44 PRK05732 2-octaprenyl-6-methox 99.9 5.4E-24 1.2E-28 170.8 13.4 178 1-186 160-355 (395)
45 PF08491 SE: Squalene epoxidas 99.9 8.7E-22 1.9E-26 147.4 17.4 181 1-188 4-206 (276)
46 PRK08255 salicylyl-CoA 5-hydro 99.9 2.3E-22 5E-27 172.7 14.1 75 108-186 259-337 (765)
47 PLN00093 geranylgeranyl diphos 99.8 2.6E-20 5.6E-25 151.4 14.4 179 1-186 190-382 (450)
48 TIGR02028 ChlP geranylgeranyl 99.8 5.3E-20 1.2E-24 147.9 14.4 179 1-186 151-343 (398)
49 TIGR02023 BchP-ChlP geranylger 99.8 6.1E-19 1.3E-23 141.4 17.6 168 1-182 146-329 (388)
50 TIGR02032 GG-red-SF geranylger 99.8 3.6E-19 7.7E-24 137.3 9.9 143 1-148 139-295 (295)
51 PRK11445 putative oxidoreducta 99.8 8.6E-18 1.9E-22 133.1 14.9 68 112-186 262-332 (351)
52 KOG3855 Monooxygenase involved 99.7 1E-17 2.3E-22 130.1 7.7 184 1-184 208-441 (481)
53 COG0644 FixC Dehydrogenases (f 99.6 3.6E-14 7.7E-19 114.2 15.7 170 1-181 143-332 (396)
54 TIGR01790 carotene-cycl lycope 99.6 5.7E-14 1.2E-18 112.7 14.3 59 111-172 259-317 (388)
55 KOG1298 Squalene monooxygenase 99.5 3.9E-13 8.4E-18 104.2 14.4 180 1-186 199-399 (509)
56 PRK10015 oxidoreductase; Provi 99.5 2.6E-13 5.6E-18 110.2 11.7 64 109-173 290-355 (429)
57 PRK10157 putative oxidoreducta 99.4 2.8E-12 6.1E-17 104.2 12.9 64 110-174 291-356 (428)
58 TIGR01789 lycopene_cycl lycope 99.3 1.5E-11 3.2E-16 98.2 11.2 62 113-179 250-312 (370)
59 PLN02697 lycopene epsilon cycl 99.2 3.1E-10 6.7E-15 94.1 14.2 62 113-174 371-440 (529)
60 PLN02463 lycopene beta cyclase 99.0 2.5E-09 5.5E-14 87.2 10.6 42 112-153 292-333 (447)
61 PF04820 Trp_halogenase: Trypt 99.0 7.3E-10 1.6E-14 90.7 7.3 167 1-186 202-383 (454)
62 PF05834 Lycopene_cycl: Lycope 98.1 4.3E-05 9.4E-10 61.3 10.8 39 112-150 252-290 (374)
63 PF10819 DUF2564: Protein of u 82.3 2.5 5.5E-05 25.7 3.3 32 119-150 19-51 (79)
64 PF01593 Amino_oxidase: Flavin 69.7 7.1 0.00015 31.2 3.9 32 114-148 418-449 (450)
65 TIGR01373 soxB sarcosine oxida 68.2 56 0.0012 26.4 8.9 22 129-150 363-384 (407)
66 TIGR01292 TRX_reduct thioredox 65.1 9.3 0.0002 29.2 3.6 34 113-150 265-298 (300)
67 PRK07233 hypothetical protein; 64.9 10 0.00022 30.8 4.0 36 113-151 395-430 (434)
68 TIGR03169 Nterm_to_SelD pyridi 64.1 11 0.00025 29.9 4.0 41 113-153 271-311 (364)
69 PRK12416 protoporphyrinogen ox 62.7 10 0.00023 31.3 3.7 32 114-151 429-460 (463)
70 COG1252 Ndh NADH dehydrogenase 61.8 14 0.0003 30.3 4.1 39 112-153 290-332 (405)
71 TIGR02730 carot_isom carotene 57.6 15 0.00033 30.7 3.8 32 114-150 459-490 (493)
72 TIGR02733 desat_CrtD C-3',4' d 57.6 15 0.00032 30.7 3.8 32 114-150 459-490 (492)
73 PLN02976 amine oxidase 56.4 40 0.00086 32.8 6.4 55 112-169 1149-1205(1713)
74 PRK09754 phenylpropionate diox 56.3 13 0.00027 30.2 3.1 37 113-150 267-308 (396)
75 TIGR02734 crtI_fam phytoene de 55.2 19 0.00041 30.2 4.0 33 114-151 459-491 (502)
76 PTZ00318 NADH dehydrogenase-li 54.0 23 0.0005 29.1 4.3 41 113-153 308-348 (424)
77 PRK12770 putative glutamate sy 53.5 19 0.00042 28.6 3.7 35 113-152 315-349 (352)
78 TIGR00562 proto_IX_ox protopor 52.6 20 0.00044 29.5 3.8 32 114-151 428-459 (462)
79 TIGR03467 HpnE squalene-associ 44.1 35 0.00075 27.5 3.9 34 113-149 385-418 (419)
80 PRK11883 protoporphyrinogen ox 44.0 34 0.00074 28.0 3.8 31 114-150 420-450 (451)
81 PRK13984 putative oxidoreducta 43.1 32 0.0007 29.7 3.7 35 113-153 568-602 (604)
82 PLN02612 phytoene desaturase 42.3 34 0.00073 29.4 3.6 35 114-151 513-547 (567)
83 PLN02568 polyamine oxidase 41.3 36 0.00079 29.1 3.6 37 114-153 500-536 (539)
84 TIGR01316 gltA glutamate synth 41.3 45 0.00098 27.6 4.1 33 113-150 415-447 (449)
85 TIGR01377 soxA_mon sarcosine o 41.1 1.8E+02 0.0039 23.1 7.8 22 129-150 338-359 (380)
86 PRK11749 dihydropyrimidine deh 41.0 39 0.00084 28.0 3.7 36 113-153 417-452 (457)
87 PRK12810 gltD glutamate syntha 40.7 40 0.00086 28.1 3.8 36 113-153 430-465 (471)
88 PLN02576 protoporphyrinogen ox 40.1 42 0.00091 28.0 3.8 32 114-151 455-486 (496)
89 PRK01909 pdxA 4-hydroxythreoni 39.8 43 0.00092 26.7 3.5 36 112-152 197-232 (329)
90 TIGR00557 pdxA 4-hydroxythreon 38.9 46 0.001 26.4 3.6 35 112-151 194-228 (320)
91 PRK05312 pdxA 4-hydroxythreoni 38.7 44 0.00096 26.7 3.5 35 112-151 206-240 (336)
92 PRK03371 pdxA 4-hydroxythreoni 38.3 46 0.001 26.5 3.5 35 112-151 200-234 (326)
93 PRK00232 pdxA 4-hydroxythreoni 38.1 46 0.00099 26.6 3.5 36 112-152 201-236 (332)
94 COG3798 Uncharacterized protei 37.3 16 0.00036 21.7 0.7 8 2-9 13-20 (75)
95 TIGR03385 CoA_CoA_reduc CoA-di 35.0 43 0.00092 27.4 3.0 38 113-150 261-303 (427)
96 PRK03743 pdxA 4-hydroxythreoni 34.8 55 0.0012 26.1 3.5 35 112-151 201-235 (332)
97 PRK02746 pdxA 4-hydroxythreoni 34.6 55 0.0012 26.3 3.4 35 112-151 204-238 (345)
98 TIGR01318 gltD_gamma_fam gluta 32.8 77 0.0017 26.5 4.2 35 113-152 431-465 (467)
99 COG1995 PdxA Pyridoxal phospha 32.7 58 0.0013 25.9 3.2 35 112-151 200-234 (332)
100 PRK12831 putative oxidoreducta 32.7 73 0.0016 26.6 4.1 36 113-153 426-461 (464)
101 TIGR02732 zeta_caro_desat caro 31.7 58 0.0012 27.3 3.3 33 113-148 441-473 (474)
102 KOG2415 Electron transfer flav 31.2 58 0.0013 27.2 3.1 62 110-171 380-443 (621)
103 TIGR01317 GOGAT_sm_gam glutama 31.2 74 0.0016 26.8 3.9 36 113-153 444-479 (485)
104 PLN02268 probable polyamine ox 31.2 68 0.0015 26.2 3.7 34 114-150 399-432 (435)
105 PRK12771 putative glutamate sy 29.2 77 0.0017 27.2 3.8 36 113-153 409-444 (564)
106 PRK12814 putative NADPH-depend 28.3 77 0.0017 27.8 3.6 37 113-154 466-502 (652)
107 PF04166 PdxA: Pyridoxal phosp 27.2 56 0.0012 25.7 2.4 36 112-152 175-210 (298)
108 TIGR03143 AhpF_homolog putativ 27.1 71 0.0015 27.4 3.2 37 113-153 273-309 (555)
109 TIGR01767 MTRK 5-methylthiorib 27.0 3.5E+02 0.0076 22.1 6.8 44 110-153 198-241 (370)
110 PLN02676 polyamine oxidase 26.6 89 0.0019 26.3 3.6 36 114-152 438-473 (487)
111 PRK12778 putative bifunctional 26.6 94 0.002 27.8 3.9 36 113-153 715-750 (752)
112 KOG2316 Predicted ATPase (PP-l 26.2 1.1E+02 0.0023 23.1 3.5 51 138-188 91-142 (277)
113 PRK12769 putative oxidoreducta 26.1 1E+02 0.0022 27.0 4.0 36 113-153 617-652 (654)
114 PRK04965 NADH:flavorubredoxin 25.9 83 0.0018 25.2 3.3 37 113-150 265-301 (377)
115 PLN03000 amine oxidase 25.9 65 0.0014 29.4 2.8 38 113-153 587-624 (881)
116 PLN02529 lysine-specific histo 25.6 62 0.0013 29.0 2.6 37 113-152 562-598 (738)
117 PRK03946 pdxA 4-hydroxythreoni 25.4 73 0.0016 25.2 2.7 33 113-151 177-209 (307)
118 PRK09564 coenzyme A disulfide 25.1 66 0.0014 26.4 2.6 38 113-150 274-316 (444)
119 PF09949 DUF2183: Uncharacteri 24.8 38 0.00082 21.8 0.9 17 107-123 58-74 (100)
120 TIGR01438 TGR thioredoxin and 23.7 1.3E+02 0.0027 25.4 4.0 34 113-150 310-343 (484)
121 COG1973 HypE Hydrogenase matur 23.6 34 0.00073 27.4 0.5 14 1-14 124-137 (449)
122 PLN02487 zeta-carotene desatur 23.5 1.8E+02 0.004 25.2 5.0 34 114-150 518-551 (569)
123 PLN02328 lysine-specific histo 23.4 80 0.0017 28.6 2.9 38 113-153 643-680 (808)
124 COG2605 Predicted kinase relat 22.3 3.6E+02 0.0078 21.4 5.7 52 114-171 90-141 (333)
125 PRK08351 DNA-directed RNA poly 22.2 91 0.002 18.1 2.0 22 1-22 33-54 (61)
126 PRK12775 putative trifunctiona 22.1 1.3E+02 0.0028 28.1 4.0 36 113-153 720-755 (1006)
127 PRK12779 putative bifunctional 21.6 1.3E+02 0.0029 27.8 3.9 36 113-153 592-627 (944)
128 PRK06116 glutathione reductase 21.3 1.5E+02 0.0033 24.4 4.0 33 113-150 295-327 (450)
129 PF09939 DUF2171: Uncharacteri 20.1 56 0.0012 19.4 0.9 8 2-9 8-15 (67)
130 PRK06416 dihydrolipoamide dehy 20.1 1.5E+02 0.0032 24.5 3.7 33 113-150 301-333 (462)
No 1
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.97 E-value=4.2e-31 Score=212.39 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=131.8
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCC-------CccceeeEecCCceEEEeecCCcc---------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHG-------LPQEIVRMRNDHILCGTIPINDKL--------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~--------- 64 (193)
+||||||++|+||++++.+.+.++++.+|++.++...... .......|++++.+++.+|++++.
T Consensus 158 lvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 237 (400)
T PRK06475 158 YLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG 237 (400)
T ss_pred EEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence 6999999999999999766677888899998876442111 122345667888888889987653
Q ss_pred -----------chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccch
Q 048694 65 -----------LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQG 133 (193)
Q Consensus 65 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G 133 (193)
...+.+.+.+..|.+.+.++++..+ ....++++...+ .+.|..|||+|+|||||+|+|+.|||
T Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~----~~~~~~grvvLiGDAAH~~~P~~GqG 311 (400)
T PRK06475 238 GENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMAD----AQFVGPDRTIFLGDASHAVTPFAAQG 311 (400)
T ss_pred CCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCC----CcceecCCEEEEecccccCCchhhhh
Confidence 1345778888899999988887765 333444443332 12346799999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 048694 134 GSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLI 182 (193)
Q Consensus 134 ~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~ 182 (193)
+|+||+||..|+++|.. .++..+|+.|++.|++++..+++.+.
T Consensus 312 ~n~aieDa~~La~~L~~------~~~~~aL~~Ye~~R~~r~~~~~~~s~ 354 (400)
T PRK06475 312 AAMAIEDAAALAEALDS------DDQSAGLKRFDSVRKERIAAVAKRGQ 354 (400)
T ss_pred HHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999964 24678999999999999999999884
No 2
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.97 E-value=6.4e-31 Score=212.17 Aligned_cols=179 Identities=22% Similarity=0.227 Sum_probs=135.3
Q ss_pred CEEecCCcchHHHhhh-C-----CCCCCcCceeEEEEEeeCCCC----------CCCccceeeEecCCceEEEeecCCcc
Q 048694 1 ILIGCDGASSVVADFL-K-----LKPKKAFASCAVRAFTDYPNG----------HGLPQEIVRMRNDHILCGTIPINDKL 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g-----~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~ 64 (193)
+||||||++|.||+.+ + ...+.++++.+|++.++.... ....+....+++++.+++.+|+.++.
T Consensus 150 ~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 229 (414)
T TIGR03219 150 LLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGR 229 (414)
T ss_pred EEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCc
Confidence 5899999999999987 2 123567888899987753221 00012234566777777777776654
Q ss_pred ---------------------------chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEE
Q 048694 65 ---------------------------LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVT 117 (193)
Q Consensus 65 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (193)
...+.+.+.+..|++.++++++..+. ...+.++..++ .++|++|||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~----~~~w~~grv~ 303 (414)
T TIGR03219 230 LINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPA--PTLWALHDLAE----LPGYVHGRVA 303 (414)
T ss_pred EEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCC--CCceeeeeccc----ccceeeCcEE
Confidence 12355677788899999988887653 23445554443 3479999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 118 VAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 118 LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+|||||+|+|+.|||+|+||+||..|+++|...... ..+++.+|+.||++|++|+.++++.|..+..
T Consensus 304 LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~-~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~ 371 (414)
T TIGR03219 304 LIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELE-AGDLPALLEAYDDVRRPRACRVQRTSREAGE 371 (414)
T ss_pred EEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccC-cchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875432 4678999999999999999999999976554
No 3
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.97 E-value=3.2e-30 Score=214.86 Aligned_cols=184 Identities=20% Similarity=0.182 Sum_probs=142.0
Q ss_pred CEEecCCcchHHHhhh-CCCCCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------------
Q 048694 1 ILIGCDGASSVVADFL-KLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL--------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------------- 64 (193)
+||||||++|++|+.+ +...+.++++.+|++.++.............+.++..+++.+|..++.
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~ 318 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGAD 318 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccc
Confidence 5899999999999998 766678889999999876533211112233344555555444544331
Q ss_pred ---chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHH
Q 048694 65 ---LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDA 141 (193)
Q Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da 141 (193)
..++.+++.+..|++.+.+++...+...+..+.++...+.. +|+.|||+|+|||||+|+|+.|||+|+||+||
T Consensus 319 ~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa 394 (668)
T PLN02927 319 APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDS 394 (668)
T ss_pred cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHHHH
Confidence 34667788889999999999987765566677777766543 78999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-----ChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048694 142 VVLARCLARNTMP-----QYEKIGEALDEYVKERRTRLLDWLLKLILLVHFR 188 (193)
Q Consensus 142 ~~La~~l~~~~~~-----~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~ 188 (193)
+.|+++|..+++. .+.+++.+|+.|+++|++++..++..+.....|.
T Consensus 395 ~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 395 FQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred HHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886531 2346889999999999999999999987666643
No 4
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=200.04 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=130.2
Q ss_pred CEEecCCcchHHHhhhCCC-CCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------------
Q 048694 1 ILIGCDGASSVVADFLKLK-PKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL--------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------------- 64 (193)
+||||||.+|.||++++.. ...+.+..++++.+...... .......++..+++++++|+.++.
T Consensus 143 ~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (373)
T PRK06753 143 LCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPK 221 (373)
T ss_pred EEEECCCcchHHHHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcc
Confidence 5999999999999999543 34566777787765433211 122334455556667778877663
Q ss_pred ---chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHH
Q 048694 65 ---LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDA 141 (193)
Q Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da 141 (193)
...+.+.+.+..|++.++++++......+..+..+...+ .++|..+||+|+|||||+|+|+.|||+|+||+||
T Consensus 222 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da 297 (373)
T PRK06753 222 YSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDA 297 (373)
T ss_pred cccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHH
Confidence 123556677788888888888665433333344443333 3478899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 142 VVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 142 ~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..|+++|.. .+.+++|+.|+++|++++..+++.+..+.+
T Consensus 298 ~~L~~~L~~------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 336 (373)
T PRK06753 298 IVLANCLNA------YDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336 (373)
T ss_pred HHHHHHhhh------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Confidence 999999954 357889999999999999999999976655
No 5
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=4.6e-30 Score=198.77 Aligned_cols=178 Identities=31% Similarity=0.429 Sum_probs=132.2
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccc--------eeeEecCCceEEEeecCCcc--------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQE--------IVRMRNDHILCGTIPINDKL-------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~p~~~~~-------- 64 (193)
|+|||||++|+||+.|+...|++.++++|++..-++...++... +..|..+..+...+..-+..
T Consensus 154 lligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~ 233 (420)
T KOG2614|consen 154 LLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAP 233 (420)
T ss_pred EEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccC
Confidence 68999999999999998777999999999997766655444222 23333444444444433322
Q ss_pred -----chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHH
Q 048694 65 -----LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIE 139 (193)
Q Consensus 65 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~ 139 (193)
..+....+....|++.++++++..+.+.+...++..++|+..+..+-..++|+|+|||||+|.|+.|||+|+|||
T Consensus 234 ~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~E 313 (420)
T KOG2614|consen 234 FDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFE 313 (420)
T ss_pred cCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHH
Confidence 223344566667889999999998877887788888999877666666789999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-----CChhh--------HHHHHHHHHHHHHHhHHHHH
Q 048694 140 DAVVLARCLARNTM-----PQYEK--------IGEALDEYVKERRTRLLDWL 178 (193)
Q Consensus 140 da~~La~~l~~~~~-----~~~~~--------~~~~l~~y~~~r~~~~~~~~ 178 (193)
|+..|+++|.++.+ ..... .+.+...|..+|..|..++.
T Consensus 314 D~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~ 365 (420)
T KOG2614|consen 314 DCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLK 365 (420)
T ss_pred HHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999876 11111 56667778777755554443
No 6
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=1.2e-28 Score=196.28 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=112.8
Q ss_pred CEEecCCcchHHHhhh-CCCCCCcCceeEEEEEeeCCCCCCCccceee-EecCCceEEEeecCCcc--------------
Q 048694 1 ILIGCDGASSVVADFL-KLKPKKAFASCAVRAFTDYPNGHGLPQEIVR-MRNDHILCGTIPINDKL-------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~-------------- 64 (193)
+||||||++|.||+++ +...........+...+..+..... +.... +.+++.+++++|+.++.
T Consensus 151 lvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
T PRK05868 151 LVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELR 229 (372)
T ss_pred EEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcc
Confidence 6999999999999998 4332222233344444444432221 22333 35777777778877542
Q ss_pred -------chhHHHHHHhc--CCC-hHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchh
Q 048694 65 -------LIRSLTLETIK--NFP-AEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGG 134 (193)
Q Consensus 65 -------~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~ 134 (193)
..++.+.+.|. .|. +.+.+.+...+ ......+. ...+++|++|||+|+|||||+|+|+.|||+
T Consensus 230 ~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~--~~~~~~~~-----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa 302 (372)
T PRK05868 230 IDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAP--DFYFDEMS-----QILMDRWSRGRVALVGDAGYCCSPLSGQGT 302 (372)
T ss_pred cccCChHHHHHHHHHHHhhCCCchHHHHhhcccCC--ceeeccce-----EEecCCCCCCCeeeeecccccCCCccCccH
Confidence 12345566665 454 34444443322 22111111 223458999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 048694 135 SAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKL 181 (193)
Q Consensus 135 ~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 181 (193)
|+||+||+.|+++|... ..+++++|+.||+.+++++.+.+...
T Consensus 303 ~~AleDa~~La~~L~~~----~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 303 SVALLGAYILAGELKAA----GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred HHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 99999999999999763 34689999999999788777777655
No 7
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=197.46 Aligned_cols=170 Identities=26% Similarity=0.238 Sum_probs=117.1
Q ss_pred CEEecCCcchHHHhhhCCC--CCCcCceeEEEEEeeCCCCCCCccceeeEec-CCceEEEeecCCc--------------
Q 048694 1 ILIGCDGASSVVADFLKLK--PKKAFASCAVRAFTDYPNGHGLPQEIVRMRN-DHILCGTIPINDK-------------- 63 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------------- 63 (193)
+||||||++|.||++++.. .+.+++...|++..+.+.... .. ...+.+ ++..+.++|+.++
T Consensus 156 lvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~ 233 (413)
T PRK07538 156 VLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLT-GR-SMVMAGHLDGKLVVYPISEPVDADGRQLINWVAE 233 (413)
T ss_pred EEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccC-CC-cEEEEcCCCCEEEEEECCCCcccCCceEEEEEEE
Confidence 6999999999999998433 467778888888765442211 11 111111 1233344444321
Q ss_pred -------c---------chhHHHHHHhcCCChH---HHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCC
Q 048694 64 -------L---------LIRSLTLETIKNFPAE---KLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMH 124 (193)
Q Consensus 64 -------~---------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh 124 (193)
. ...+.+.+.+..|... +.++++... ....+++....+ +++|..|||+|+|||||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~----~~~w~~grv~LvGDAAH 307 (413)
T PRK07538 234 VRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDP----LPRWTRGRVTLLGDAAH 307 (413)
T ss_pred EcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCC----CCcccCCcEEEEeeccC
Confidence 0 2234455555555432 445554332 333445544443 34799999999999999
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048694 125 VMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLIL 183 (193)
Q Consensus 125 ~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~ 183 (193)
+|+|+.|||+|+||+||..|+++|.+. .+.+.+|+.||++|++++.+++..+..
T Consensus 308 ~~~P~~GqG~~~Ai~Da~~La~~L~~~-----~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 308 PMYPVGSNGASQAILDARALADALAAH-----GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 999999999999999999999999873 357899999999999999999998865
No 8
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.96 E-value=4.3e-28 Score=194.64 Aligned_cols=175 Identities=23% Similarity=0.224 Sum_probs=127.3
Q ss_pred CEEecCCcchHHHhhh-CCCCCCcCceeEEEEEeeCCCCCCC--ccceeeEecCCceEEEeecCCcc-------------
Q 048694 1 ILIGCDGASSVVADFL-KLKPKKAFASCAVRAFTDYPNGHGL--PQEIVRMRNDHILCGTIPINDKL------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~------------- 64 (193)
+||+|||.+|.+|+.+ |. .+.+.+...+++.++....... ......+.+++.+++.+|+.++.
T Consensus 157 ~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~ 235 (396)
T PRK08163 157 ALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQ 235 (396)
T ss_pred EEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCC
Confidence 5899999999999998 54 4566777788877664322111 11223344555555566655442
Q ss_pred -------chhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhh
Q 048694 65 -------LIRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAG 137 (193)
Q Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~a 137 (193)
...+.+.+.|..|.+.+.++++... .+..+......+ .++|..|||+|+|||||+|+|+.|||+|+|
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~a 309 (396)
T PRK08163 236 EEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMA 309 (396)
T ss_pred cccccCCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHH
Confidence 2245677888888888888876543 222233333222 357889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 138 IEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 138 l~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+||..|+++|... ..+++.+|+.|+++|++|+.+++..+..+.+
T Consensus 310 i~Da~~La~~L~~~----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~ 354 (396)
T PRK08163 310 LEDAVTLGKALEGC----DGDAEAAFALYESVRIPRTARVVLSAREMGR 354 (396)
T ss_pred HHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999753 3467899999999999999999999876654
No 9
>PRK07236 hypothetical protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=194.52 Aligned_cols=175 Identities=19% Similarity=0.101 Sum_probs=121.6
Q ss_pred CEEecCCcchHHHhhh-CCCCCCcCceeEEEEEeeCCCCCC-----CccceeeEecCCceEEEeecCCc--------c--
Q 048694 1 ILIGCDGASSVVADFL-KLKPKKAFASCAVRAFTDYPNGHG-----LPQEIVRMRNDHILCGTIPINDK--------L-- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~--------~-- 64 (193)
+||||||++|.||+++ +...+.++++.+|++.+....... ....+..+.+++.+++.+|+.+. .
T Consensus 145 ~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (386)
T PRK07236 145 LLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRY 224 (386)
T ss_pred EEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEE
Confidence 5999999999999998 444567888888888654321111 11223344455555556665421 0
Q ss_pred -------------------------------------chhHHHHHHhcC-CChHHHhccccCCCCCceeeeeeeecCccc
Q 048694 65 -------------------------------------LIRSLTLETIKN-FPAEKLRNGKDCDLSSLSFTHFRYRAPWDI 106 (193)
Q Consensus 65 -------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (193)
...+.+.+.+.. |++.+.++++..+.. ..++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----- 297 (386)
T PRK07236 225 NWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL----- 297 (386)
T ss_pred EEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-----
Confidence 011222222333 677777777665421 12223221
Q ss_pred ccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 107 LLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|... ..++..+|+.|+++|++++.+++..+..+-.
T Consensus 298 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~----~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~ 373 (386)
T PRK07236 298 EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAA----AGDIDAALAAWEAERLAVGAAIVARGRRLGA 373 (386)
T ss_pred cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 235788999999999999999999999999999999999999874 2347899999999999999999999976665
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.96 E-value=1.9e-28 Score=196.16 Aligned_cols=182 Identities=24% Similarity=0.285 Sum_probs=119.8
Q ss_pred CEEecCCcchHHHhhhCCCC-CC-cCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-----chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKP-KK-AFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-----LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~ 73 (193)
+||||||.||.||+.++... .. ..+...+...+... .+.......++.+.+.+.++|+.++. .......+.
T Consensus 153 llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (387)
T COG0654 153 LLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE--EPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAED 230 (387)
T ss_pred EEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC--CCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHH
Confidence 69999999999999998332 22 22334444444433 33355666677888788899999544 111111222
Q ss_pred hcCCCh-----HHHhccccCC-CCCceeeeeeeecCc-ccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHH
Q 048694 74 IKNFPA-----EKLRNGKDCD-LSSLSFTHFRYRAPW-DILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLAR 146 (193)
Q Consensus 74 ~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~ 146 (193)
...+.+ .+.+.+.... .............|+ ...+.+|..+||+|+|||||.|+|++|||+|+||+||..|++
T Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~ 310 (387)
T COG0654 231 LQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE 310 (387)
T ss_pred HhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHH
Confidence 222221 1222222221 001111112222233 345567888999999999999999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 147 CLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 147 ~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+|.++... ..+ ..+|+.|+++|++++..++..+..+.+
T Consensus 311 ~L~~~~~~-~~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~ 348 (387)
T COG0654 311 ALAAAPRP-GAD-AAALAAYEARRRPRAEAIQKLSRALGR 348 (387)
T ss_pred HHHHHhhc-Ccc-HHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99997652 122 899999999999999999999986665
No 11
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=1.2e-27 Score=198.12 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=123.9
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------c------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL---------L------ 65 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------~------ 65 (193)
|||||||.+|++|++++...+.+.+...+.+........+.......++++++.++++|+++++ .
T Consensus 210 LvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p~~~ 289 (567)
T PTZ00367 210 LVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLPSLE 289 (567)
T ss_pred EEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCCChH
Confidence 6999999999999999755444555555555433222222233445677888999999999876 0
Q ss_pred -hhHHHHHHhc-CCChHHHhccccC-C-CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHH
Q 048694 66 -IRSLTLETIK-NFPAEKLRNGKDC-D-LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDA 141 (193)
Q Consensus 66 -~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da 141 (193)
..+.+.+.+. .+++.+++.+... . ...+..++....++ ..|..+|++|+|||||+|+|++|||+|+||+||
T Consensus 290 ~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-----~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA 364 (567)
T PTZ00367 290 EQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-----AFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDC 364 (567)
T ss_pred HHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-----ccCCCCCEEEEEcccCCCCCcccccHHHHHHHH
Confidence 0112222222 3455555544221 1 12334444444443 246789999999999999999999999999999
Q ss_pred HHHHHHHHhccC------CChhhHHHHHH----HHHHHHHHhHHHHHHHHHHHHH
Q 048694 142 VVLARCLARNTM------PQYEKIGEALD----EYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 142 ~~La~~l~~~~~------~~~~~~~~~l~----~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..|+++|..+.. .+..+++++|+ .|++.|++++..++..+..+++
T Consensus 365 ~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~ 419 (567)
T PTZ00367 365 IRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYS 419 (567)
T ss_pred HHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999976421 11235567777 9999999999999999988887
No 12
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.95 E-value=2.2e-27 Score=197.15 Aligned_cols=182 Identities=24% Similarity=0.199 Sum_probs=115.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEE-EeeCCCCCCCccceeeEecCCceEEEeecCCccch------hHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRA-FTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLI------RSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~ 73 (193)
+||||||.+|.||+++|...........|.. .+..............+++++..+.++|+.++... ...-.+.
T Consensus 165 ~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 244 (538)
T PRK06183 165 YVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQ 244 (538)
T ss_pred EEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhh
Confidence 5899999999999999876544332222221 11122111112234556677777778887765400 0000000
Q ss_pred hcCCChHHHhccccC--CCCCce-eeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 74 IKNFPAEKLRNGKDC--DLSSLS-FTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
. ...+.+.+++... .+.... .+...+.. ....+++|..|||+|+|||||.|+|++|||+|+||+||..|+++|..
T Consensus 245 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~ 322 (538)
T PRK06183 245 L-ASPENVWRLLAPWGPTPDDAELIRHAVYTF-HARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAA 322 (538)
T ss_pred c-CCHHHHHHHHHhhCCCCcceEEEEEEeeeE-ccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHH
Confidence 0 0112233333222 111111 11111111 12356789999999999999999999999999999999999999987
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 151 NTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 151 ~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
++. +.+.+.+|+.|+++|++++..+++.+..+..
T Consensus 323 ~~~--g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~ 356 (538)
T PRK06183 323 VLR--GRAGDALLDTYEQERRPHARAMIDLAVRLGR 356 (538)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 765 3456789999999999999999999866554
No 13
>PRK07588 hypothetical protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=191.15 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=114.1
Q ss_pred CEEecCCcchHHHhhh-CCCC--CCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-------------
Q 048694 1 ILIGCDGASSVVADFL-KLKP--KKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------- 64 (193)
+||||||++|+||+.+ +... ..+.+...+......... .....+..+.+++.+++++|++++.
T Consensus 149 ~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~ 227 (391)
T PRK07588 149 LVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDN 227 (391)
T ss_pred EEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcc
Confidence 6999999999999987 3322 223343333322211111 1122234455667677788876654
Q ss_pred ------chhHHHHHHhcCCChHHHhccccCCCC-CceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhh
Q 048694 65 ------LIRSLTLETIKNFPAEKLRNGKDCDLS-SLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAG 137 (193)
Q Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~a 137 (193)
...+.+.+.+..+.+....+++..... ....... . ...+++|..|||+|+|||||.|+|+.|||+|+|
T Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~a 302 (391)
T PRK07588 228 PPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVV-S----QIRMDRWSRGRVALVGDAAACPSLLGGEGSGLA 302 (391)
T ss_pred ccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeee-e----eeccCccccCCEEEEEccccCCCCccCCcHHHH
Confidence 123345556666544333333322211 1111111 1 123457899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 138 IEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 138 l~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+||..|+++|.... .+.+.+|+.|++.|++++..++..+..+..
T Consensus 303 ieDa~~La~~L~~~~----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~ 347 (391)
T PRK07588 303 ITEAYVLAGELARAG----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLS 347 (391)
T ss_pred HHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999997632 357789999999999999999998864433
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=3.7e-27 Score=187.95 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=109.6
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-------chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-------LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~~ 73 (193)
+||||||++|.||+.++.......+..++...++.... .......++.+.+.++++|+.++. ..... .+.
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~--~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~-~~~ 227 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKP--HENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQ-AAL 227 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccCCeEEEEEEeccCC--CCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHH-HHH
Confidence 69999999999999996554323334555555443322 222233344455567888998763 11111 111
Q ss_pred hcCCC-hHHHhccc--------cCCC-CCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNFP-AEKLRNGK--------DCDL-SSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~~-~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
+...+ +.+.+++. .... .....++++ ...+++|.++||+|+|||||.|+|+.|||+|+||+||..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~-----~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~ 302 (374)
T PRK06617 228 IVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLK-----ARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEI 302 (374)
T ss_pred HHcCCHHHHHHHHHHhhchhcCceeeccceeEEEee-----eeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHH
Confidence 11111 11222111 1100 112222222 224568999999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|.. ..+|+.|+++|++++..++..+..+.+
T Consensus 303 La~~L~~---------~~~L~~Ye~~R~~~~~~~~~~t~~l~~ 336 (374)
T PRK06617 303 LSMIVSN---------NGTLQEYQKLRQEDNFIMYKLTDELNN 336 (374)
T ss_pred HHHHHcC---------cchHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999842 147999999999999999999987776
No 15
>PRK06847 hypothetical protein; Provisional
Probab=99.95 E-value=4e-27 Score=187.77 Aligned_cols=174 Identities=21% Similarity=0.287 Sum_probs=121.5
Q ss_pred CEEecCCcchHHHhhh-CCC-CCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc--------------
Q 048694 1 ILIGCDGASSVVADFL-KLK-PKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------- 64 (193)
+||+|||.+|.+|+.+ +.. .+.+++...+++.++.+.. ......+.+++..+.++|..++.
T Consensus 154 ~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (375)
T PRK06847 154 LVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE---VDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPR 230 (375)
T ss_pred EEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC---ccceEEEeCCCcEEEEEcCCCCeEEEEEeccCccccc
Confidence 5899999999999988 543 4667777777776554322 12234555666666677776553
Q ss_pred ----chhHHHHHHhcCCCh-HHHhccccCC-CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhH
Q 048694 65 ----LIRSLTLETIKNFPA-EKLRNGKDCD-LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGI 138 (193)
Q Consensus 65 ----~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al 138 (193)
...+.+.+.+..|.+ .+..+.+... ......+++.... ...+|..+||+|+|||||+|+|+.|||+|+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~grv~LiGDAaH~~~P~~GqG~n~ai 306 (375)
T PRK06847 231 IEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLL----VPAPWHRGRVVLIGDAAHATTPHLAQGAGMAI 306 (375)
T ss_pred CChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhcc----CCCCccCCeEEEEechhccCCCCccccHHHHH
Confidence 123344555666654 3343333221 1122222222211 12368899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 139 EDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 139 ~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+||..|+++|.+ ..+++.+|+.|+++|++++..+++.+..+..
T Consensus 307 eDA~~La~~L~~-----~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~ 349 (375)
T PRK06847 307 EDAIVLAEELAR-----HDSLEAALQAYYARRWERCRMVVEASARIGR 349 (375)
T ss_pred HHHHHHHHHHhh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999986 3567889999999999999999999976655
No 16
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=1.7e-27 Score=191.75 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=117.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCc-CceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-------chhHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKA-FASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-------LIRSLTLE 72 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~ 72 (193)
+||||||++|.||+.++.+.+.. .+..++.+.+..... .......++.+++.++++|+.++. ..... .+
T Consensus 159 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~-~~ 235 (405)
T PRK08850 159 LVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDP--HNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLR-AE 235 (405)
T ss_pred EEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCC--CCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHH-HH
Confidence 69999999999999998764432 345566666554332 123344566777778889998643 11111 11
Q ss_pred Hhc-----CCChHHHhccccCC-----CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHH
Q 048694 73 TIK-----NFPAEKLRNGKDCD-----LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAV 142 (193)
Q Consensus 73 ~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~ 142 (193)
.+. .|...+.+.+.... ......+++. ...+++|.++||+|+|||||.|+|+.|||+|+||+||.
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~-----~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~ 310 (405)
T PRK08850 236 ALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLK-----MRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAA 310 (405)
T ss_pred HHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecc-----eeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHH
Confidence 111 11111222211100 0011112221 23456899999999999999999999999999999999
Q ss_pred HHHHHHHhccCC-ChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 143 VLARCLARNTMP-QYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 143 ~La~~l~~~~~~-~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
.|+++|...... .+.....+|+.|+++|++++..++..+..+.+
T Consensus 311 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 355 (405)
T PRK08850 311 SLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD 355 (405)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999876531 12235789999999999999999999976666
No 17
>PRK08013 oxidoreductase; Provisional
Probab=99.95 E-value=5.3e-27 Score=188.62 Aligned_cols=182 Identities=16% Similarity=0.105 Sum_probs=110.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-------chhHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-------LIRSLTLE 72 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~ 72 (193)
+||||||++|+||++++.+..... ...++...++.... .......++..++.+.++|+.++. ...+.. +
T Consensus 159 lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~-~ 235 (400)
T PRK08013 159 LVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEP--HDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEA-Q 235 (400)
T ss_pred EEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCC--CCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHH-H
Confidence 699999999999999987654322 33344444443322 122223334444467788887643 011111 1
Q ss_pred HhcC-CChHHHhccccCC---CCCceeee-eeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHH
Q 048694 73 TIKN-FPAEKLRNGKDCD---LSSLSFTH-FRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147 (193)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~ 147 (193)
.+.. ..+.+.+.+.... ........ ....+.....+++|.++||+|+|||||.|+|+.|||+|+||+||..|+++
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~ 315 (400)
T PRK08013 236 RMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAE 315 (400)
T ss_pred HHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHH
Confidence 1111 1112222111100 00011100 00111122346789999999999999999999999999999999999999
Q ss_pred HHhccCCChhh--HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 148 LARNTMPQYEK--IGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 148 l~~~~~~~~~~--~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|...+.. +.+ ...+|+.|+++|++++..++..+..+..
T Consensus 316 L~~~~~~-~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 355 (400)
T PRK08013 316 LRRLHRQ-GKDIGQHLYLRRYERSRKHSAALMLAGMQGFRD 355 (400)
T ss_pred HHHHHhc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876532 222 2357999999999999999988766655
No 18
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.95 E-value=3.5e-27 Score=189.97 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=110.3
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc----------chhHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL----------LIRSL 69 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~~~ 69 (193)
+||||||++|.||++++...+.+. ...+....+..+.. .......++.+.+.++++|+.++. .....
T Consensus 159 ~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~ 236 (405)
T PRK05714 159 LVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEP--HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEE 236 (405)
T ss_pred EEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCC--CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHH
Confidence 589999999999999976543322 11222222222221 122223334666678889986421 01111
Q ss_pred -----------HHHHh-cCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhh
Q 048694 70 -----------TLETI-KNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAG 137 (193)
Q Consensus 70 -----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~a 137 (193)
+.+.+ +.|...+.+++.. .....++++. ..+++|.++||+|+|||||+|+|+.|||+|+|
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~-----~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~a 308 (405)
T PRK05714 237 AERLMALDDDAFCAALERAFEGRLGEVLSA---DPRLCVPLRQ-----RHAKRYVEPGLALIGDAAHTIHPLAGQGVNLG 308 (405)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhCCceec---CCccEEecce-----eehhhhccCCEEEEEeccccCCCcccccccHH
Confidence 11111 1112222222211 1122333332 23568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 138 IEDAVVLARCLARNTMPQ-YEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 138 l~da~~La~~l~~~~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+||..|+++|..+...+ ....+.+|+.||++|++++..++..+..+.+
T Consensus 309 l~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 358 (405)
T PRK05714 309 FLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFER 358 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998654211 1223589999999999999999999976665
No 19
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=3.6e-26 Score=188.13 Aligned_cols=179 Identities=13% Similarity=0.073 Sum_probs=119.4
Q ss_pred CEEecCCcchHHHhhhCCCCC-CcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------c-----
Q 048694 1 ILIGCDGASSVVADFLKLKPK-KAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL---------L----- 65 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------~----- 65 (193)
+||||||.+|.+|++++...+ .+++...+. ......+.+.....+++++..++++|++++. .
T Consensus 199 LVVgADG~~S~vR~~l~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~ 275 (514)
T PLN02985 199 LTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI---SKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSI 275 (514)
T ss_pred EEEECCCCchHHHHHhccCCCcceeEeEEEE---EccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCc
Confidence 689999999999999965432 233333332 1111112233445667777888889988765 0
Q ss_pred hhHHHHHHh-----cCCChHHHhccccC-CC-CCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhH
Q 048694 66 IRSLTLETI-----KNFPAEKLRNGKDC-DL-SSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGI 138 (193)
Q Consensus 66 ~~~~~~~~~-----~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al 138 (193)
....+.+.+ ..+++.+++.+... +. ..+...+....+ ...|..+|++|+|||||+|+|++|||||+||
T Consensus 276 ~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~-----~~~~~~~~vvLiGDAaH~~~P~~GQGmn~Al 350 (514)
T PLN02985 276 ANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMS-----ATLSDKKGVIVLGDAFNMRHPAIASGMMVLL 350 (514)
T ss_pred ChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccccc-----ccccCCCCEEEEecccccCCCCccccHhHHH
Confidence 011223332 23445566554321 11 122222222211 2345678999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H
Q 048694 139 EDAVVLARCLARNTM-PQYEKIGEALDEYVKERRTRLLDWLLKLILLVH-F 187 (193)
Q Consensus 139 ~da~~La~~l~~~~~-~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-~ 187 (193)
+||..|+++|...-. .+..++.++|+.|+++|++++..++..|..++. |
T Consensus 351 eDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f 401 (514)
T PLN02985 351 SDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVL 401 (514)
T ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 999999999986421 124577899999999999999999999988887 5
No 20
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.95 E-value=2.2e-26 Score=184.43 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=68.0
Q ss_pred ccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 107 LLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|..... .+.+.+|..|++.|++|+..+++.|..+..
T Consensus 272 ~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~---~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~ 348 (390)
T TIGR02360 272 VCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ---EGSSAGIEGYSARALARVWKAERFSWWMTS 348 (390)
T ss_pred ccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999999987432 346789999999999999999999977654
No 21
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.95 E-value=1.1e-27 Score=188.83 Aligned_cols=73 Identities=41% Similarity=0.477 Sum_probs=63.9
Q ss_pred ccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 048694 107 LLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKL 181 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 181 (193)
..++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|..++. +...+++|+.|+++|++++.++++.+
T Consensus 284 ~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~--g~~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 284 VADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK--GEASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp EESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44578899999999999999999999999999999999999999876 34567899999999999999998753
No 22
>PRK06184 hypothetical protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=192.46 Aligned_cols=180 Identities=20% Similarity=0.114 Sum_probs=112.2
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCce--eEEEEEeeCCCCCCCccceeeEecCC-ceEEEeecCCccch--hHHHH-HHh
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFAS--CAVRAFTDYPNGHGLPQEIVRMRNDH-ILCGTIPINDKLLI--RSLTL-ETI 74 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~--~~~~~-~~~ 74 (193)
+||||||++|.||+++|......... ..+...+..+.. ....+..+..+. ..+.++|+.++... ..... +..
T Consensus 159 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 236 (502)
T PRK06184 159 YLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGE 236 (502)
T ss_pred EEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCcc
Confidence 58999999999999998775544321 222222222211 122333344433 56667787655300 00000 000
Q ss_pred cCC-ChHHHhccccCCC-CCce----eeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHH
Q 048694 75 KNF-PAEKLRNGKDCDL-SSLS----FTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCL 148 (193)
Q Consensus 75 ~~~-~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l 148 (193)
... .+.+.++++.... .... .|...+ .....++++|..|||+|+|||||.++|++|||+|+||+||..|+++|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkL 315 (502)
T PRK06184 237 PDLSADGLTALLAERTGRTDIRLHSVTWASAF-RMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKL 315 (502)
T ss_pred CCCCHHHHHHHHHHhcCCCCcceeeeeeeecc-ccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHH
Confidence 001 1223333322111 1111 111111 11234567899999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 149 ARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 149 ~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..+++ + +.+.+|+.|+++|++++..+++.+..+.+
T Consensus 316 a~vl~--g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~ 350 (502)
T PRK06184 316 AAVLA--G-APEALLDTYEEERRPVAAAVLGLSTELLD 350 (502)
T ss_pred HHHHc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 3 56789999999999999999999977665
No 23
>PRK07045 putative monooxygenase; Reviewed
Probab=99.94 E-value=5.4e-26 Score=182.12 Aligned_cols=178 Identities=22% Similarity=0.231 Sum_probs=110.5
Q ss_pred CEEecCCcchHHHhhh-CCCCC--CcCceeEEEEEeeCCCCCCCccceeeEec-CCceEEEeecCCcc------------
Q 048694 1 ILIGCDGASSVVADFL-KLKPK--KAFASCAVRAFTDYPNGHGLPQEIVRMRN-DHILCGTIPINDKL------------ 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~-g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~------------ 64 (193)
+||||||++|.||+++ +.+.. .+..... .+.+...... ......++. ++++++++|+.++.
T Consensus 156 ~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 232 (388)
T PRK07045 156 VLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEM 232 (388)
T ss_pred EEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccc
Confidence 5899999999999975 55432 2332223 3444332221 122223333 34456678877654
Q ss_pred ------chhHHHHHHhcCCC-hHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhh
Q 048694 65 ------LIRSLTLETIKNFP-AEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAG 137 (193)
Q Consensus 65 ------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~a 137 (193)
...+.+.+.+..+. +.+.+.++.... ...+.. .+.....+++|+.+||+|+|||||.|+|+.|||+|+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~a 308 (388)
T PRK07045 233 QGYLADTTRTKLLARLNEFVGDESADAMAAIGA--GTAFPL--IPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLA 308 (388)
T ss_pred hhccCCCCHHHHHHHHhhhcCccchHHHhccCc--ccccce--eecCccccccccCCCEEEEEccccccCCCccccHHHH
Confidence 00122222233221 222222222111 011111 1111234568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 138 IEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 138 l~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+||..|+++|..++.+ ..+.+.+|+.|+++|++++..++..+..+..
T Consensus 309 i~Da~~La~~L~~~~~~-~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 356 (388)
T PRK07045 309 IEDAGELGACLDLHLSG-QIALADALERFERIRRPVNEAVISYGHALAT 356 (388)
T ss_pred HHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence 99999999999887643 3467899999999999999999988865444
No 24
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.94 E-value=3.6e-26 Score=192.29 Aligned_cols=181 Identities=19% Similarity=0.119 Sum_probs=111.9
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCC--CCCCC-ccceeeEecCCceEEEeecCCcc--chhHHH---H-
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYP--NGHGL-PQEIVRMRNDHILCGTIPINDKL--LIRSLT---L- 71 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~---~- 71 (193)
+||||||+||.||+++|...........| ++.+.. ...+. .........+++.++++|+.++. .....+ .
T Consensus 201 ~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~ 279 (634)
T PRK08294 201 YVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPP 279 (634)
T ss_pred EEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCC
Confidence 58999999999999998765544322222 222211 11111 11222233566778888988773 100000 0
Q ss_pred -H--HhcCC-ChHHHhccccC-CC-----CCceeeeeeeecCcccccccc----------cCCcEEEecccCCCCCCCcc
Q 048694 72 -E--TIKNF-PAEKLRNGKDC-DL-----SSLSFTHFRYRAPWDILLGRL----------QKGTVTVAGDSMHVMAPFIG 131 (193)
Q Consensus 72 -~--~~~~~-~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~----------~~~~v~LiGDAAh~~~P~~g 131 (193)
+ ..... .+.+.+.+... .+ ..+.+|..+.. ..+.+++| ..|||+|+|||||.++|.+|
T Consensus 280 ~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i--~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~G 357 (634)
T PRK08294 280 DERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEV--GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAG 357 (634)
T ss_pred ccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccc--cceehhhcccccccccccccCCEEEEecCccCCCCccc
Confidence 0 00011 12223332221 11 12233333221 12233333 36999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 132 QGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 132 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
||||+||+||+.|++.|..++. +.+.+.+|+.|+++|++++..+++.+..+..
T Consensus 358 QGmN~giqDA~nLawkLa~vl~--g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~ 410 (634)
T PRK08294 358 QGMNVSMQDGFNLGWKLAAVLS--GRSPPELLHTYSAERQAIAQELIDFDREWST 410 (634)
T ss_pred cchhhHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 3567889999999999999999999865554
No 25
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.94 E-value=5.4e-26 Score=184.63 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=69.2
Q ss_pred ccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCCh-hhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048694 107 LLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQY-EKIGEALDEYVKERRTRLLDWLLKLILLV 185 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~-~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 185 (193)
.+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|......+. .....+|+.|+++|++++..++..+..+.
T Consensus 326 ~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~ 405 (437)
T TIGR01989 326 HADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLH 405 (437)
T ss_pred chhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999988654211 12356899999999999999999998776
Q ss_pred H
Q 048694 186 H 186 (193)
Q Consensus 186 ~ 186 (193)
.
T Consensus 406 ~ 406 (437)
T TIGR01989 406 K 406 (437)
T ss_pred H
Confidence 6
No 26
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.94 E-value=1.2e-25 Score=179.86 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=67.3
Q ss_pred cccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048694 106 ILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLV 185 (193)
Q Consensus 106 ~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 185 (193)
..+++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|... +.+.+++|+.||++|+++...++..+..+.
T Consensus 271 ~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~ 346 (384)
T PRK08849 271 RHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ----GVLNDASFARYERRRRPDNLLMQTGMDLFY 346 (384)
T ss_pred cccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999999999999999999742 235678999999999999999988776655
Q ss_pred H
Q 048694 186 H 186 (193)
Q Consensus 186 ~ 186 (193)
+
T Consensus 347 ~ 347 (384)
T PRK08849 347 K 347 (384)
T ss_pred H
Confidence 5
No 27
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.94 E-value=6.9e-26 Score=188.67 Aligned_cols=179 Identities=21% Similarity=0.115 Sum_probs=110.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCc-eeEEEEEeeCCCCCCCccceeeEe----cCCceEEEeecCCcc----------c
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFA-SCAVRAFTDYPNGHGLPQEIVRMR----NDHILCGTIPINDKL----------L 65 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~----------~ 65 (193)
+||||||.+|.||+.+|........ ...+...+..... .......++ .++..+++.|..++. .
T Consensus 176 ~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (547)
T PRK08132 176 WVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD--FPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDA 253 (547)
T ss_pred EEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC--CCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCC
Confidence 5899999999999999876544321 1111111222211 111222233 234445555554432 0
Q ss_pred hhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHH
Q 048694 66 IRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La 145 (193)
..+. ....+.+.+.+++++.......+. |...+.. ....+++|..|||+|+|||||.|+|++|||+|+||+||..|+
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~La 330 (547)
T PRK08132 254 DPEA-EKKPENVIPRVRALLGEDVPFELE-WVSVYTF-QCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLA 330 (547)
T ss_pred Cchh-hcCHHHHHHHHHHHcCCCCCeeEE-EEEeeee-eeeeecccccccEEEEecccccCCCcccccccchHHHHHHHH
Confidence 0000 001112333455555422111111 2111111 134567899999999999999999999999999999999999
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 146 RCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 146 ~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+.|..++. +...+.+|+.||++|++++..++..+..+..
T Consensus 331 wkLa~vl~--g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~ 369 (547)
T PRK08132 331 WKLALVLR--GRAPDSLLDSYASEREFAADENIRNSTRSTD 369 (547)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998876 3456889999999999999999987755443
No 28
>PRK07190 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=183.66 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=113.6
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEE---EEEeeCCCCCCCccceeeEecCCceEEEeecCCccch-hHHHHHHhcC
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAV---RAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLI-RSLTLETIKN 76 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~ 76 (193)
+||||||.+|.||+++|++.+.......| ...++...+ ..+....+..+.+.++++|..++... .... ....
T Consensus 156 ~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~~~ 231 (487)
T PRK07190 156 YVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFP--KVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DTKD 231 (487)
T ss_pred EEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCC--CCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CCCC
Confidence 48999999999999998876654332222 122222111 11122223345556667888665311 0000 0011
Q ss_pred CC-hHHHhcccc-CCCCCce----eeeeeeecCccccccccc-CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHH
Q 048694 77 FP-AEKLRNGKD-CDLSSLS----FTHFRYRAPWDILLGRLQ-KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLA 149 (193)
Q Consensus 77 ~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~ 149 (193)
+. +++.+.+.. ..+..+. .|...+ +...+.+++|. .|||+|+|||||.++|++|||||+||+||..|+++|.
T Consensus 232 ~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~-~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa 310 (487)
T PRK07190 232 FTLEQAIAKINHAMQPHRLGFKEIVWFSQF-SVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLN 310 (487)
T ss_pred CCHHHHHHHHHHhcCCCCCceEEEEEEEEe-eeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHH
Confidence 21 122222222 1111111 122222 22356778886 7999999999999999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 150 RNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 150 ~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
.+++ +...+..|+.|+++|++....++..+..+..
T Consensus 311 ~v~~--g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~ 345 (487)
T PRK07190 311 MVIH--HGASPELLQSYEAERKPVAQGVIETSGELVR 345 (487)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876 3456889999999999999999998876554
No 29
>PRK06126 hypothetical protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=188.09 Aligned_cols=182 Identities=22% Similarity=0.156 Sum_probs=109.5
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCc-eeEEEEEeeCCCC---CCCccc-eeeEecCCceEEEeecCCccchhHH-HH---
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFA-SCAVRAFTDYPNG---HGLPQE-IVRMRNDHILCGTIPINDKLLIRSL-TL--- 71 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~-~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~-~~--- 71 (193)
+||||||.+|.||+++|........ ...+...+..+.. ...... ..++.+++....+++++++....-. +.
T Consensus 179 ~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 258 (545)
T PRK06126 179 YLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDEWLFHQLRGGE 258 (545)
T ss_pred EEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCCeEEEEEecCCC
Confidence 5899999999999999876543321 1222233333211 111222 2333455555555555443200000 00
Q ss_pred HHhc----CCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHH
Q 048694 72 ETIK----NFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147 (193)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~ 147 (193)
.... .+.+.+++.+.. + .................+++|..|||+|+|||||.|+|++|||+|+||+||..|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~ 336 (545)
T PRK06126 259 DEFTIDDVDARAFVRRGVGE-D-IDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWK 336 (545)
T ss_pred CCCCCCHHHHHHHHHHhcCC-C-CCeEEEeecccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHH
Confidence 0000 111223333221 0 011111111111123456789999999999999999999999999999999999999
Q ss_pred HHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 148 LARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 148 l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|..+++ ..+.+.+|+.|+++|++++..++..+....+
T Consensus 337 La~~~~--~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~ 373 (545)
T PRK06126 337 LAAVLN--GWAGPALLDSYEAERRPIAARNTDYARRNAD 373 (545)
T ss_pred HHHHHc--CCCcHHHHhhhHHHhhHHHHHHHHHHHHHHH
Confidence 988765 3456789999999999999999999876554
No 30
>PRK06185 hypothetical protein; Provisional
Probab=99.93 E-value=3e-25 Score=178.86 Aligned_cols=178 Identities=18% Similarity=0.113 Sum_probs=116.3
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCc-eeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFA-SCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL--------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------------- 64 (193)
+||+|||.+|.||+.+|...+.+.. ..... +..+...........++.+++.++++|..+..
T Consensus 160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i~~~~~~~~~~~~~ 237 (407)
T PRK06185 160 LVVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQCGYVIPKGGYAALR 237 (407)
T ss_pred EEEECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccceEecCCcEEEEEcCCCeEEEEEEecCCCchhhh
Confidence 5899999999999999876543321 22222 22222211122234456667777788876221
Q ss_pred -chhHHHHHHhcCCChHHHhccccCC-CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHH
Q 048694 65 -LIRSLTLETIKNFPAEKLRNGKDCD-LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAV 142 (193)
Q Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~ 142 (193)
...+.+.+.+..+.+.+.+.+.... ......+++. ...+++|..+|++|+|||||.++|+.|||+|+||+|+.
T Consensus 238 ~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~-----~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~ 312 (407)
T PRK06185 238 AAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVR-----VDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAV 312 (407)
T ss_pred hhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEe-----ccccccccCCCeEEEeccccccCcccccchhHHHHHHH
Confidence 1122333333333333333333221 1122222221 22456788999999999999999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 143 VLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 143 ~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
.|++.|.+.+... +..+..|+.|+++|+++...++..+..+.+
T Consensus 313 ~La~~l~~~~~~~-~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 355 (407)
T PRK06185 313 AAANILAEPLRRG-RVSDRDLAAVQRRREFPTRVTQALQRRIQR 355 (407)
T ss_pred HHHHHHHHHhccC-CccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999876532 234589999999999999999999988777
No 31
>PRK08244 hypothetical protein; Provisional
Probab=99.93 E-value=1e-25 Score=185.63 Aligned_cols=180 Identities=18% Similarity=0.104 Sum_probs=113.8
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCccch-----hHHHH-HH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLLI-----RSLTL-ET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~-~~ 73 (193)
+||||||.+|.||+++|...+... ....+.+.+...... ......++.+++.++++|++++... ..... ..
T Consensus 150 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~ 227 (493)
T PRK08244 150 YVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPK 227 (493)
T ss_pred EEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccC
Confidence 589999999999999987654332 233333333332221 2234445677778889999876510 00000 00
Q ss_pred hcC-CChHHHhccccCCCCC----ceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHH
Q 048694 74 IKN-FPAEKLRNGKDCDLSS----LSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCL 148 (193)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l 148 (193)
-.. -.+++.+.+....... ...|...+. .....+++|.+|||+|+|||||.++|++|||+|+||+||..|+++|
T Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~L 306 (493)
T PRK08244 228 DEPVTLEELKTSLIRICGTDFGLNDPVWMSRFG-NATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKL 306 (493)
T ss_pred CCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecc-cceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHH
Confidence 000 0122333222211110 011211111 1223566899999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048694 149 ARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLV 185 (193)
Q Consensus 149 ~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 185 (193)
..+++ +...+.+|+.|+++|++++..++..+....
T Consensus 307 a~~l~--g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~ 341 (493)
T PRK08244 307 AAAIK--GWAPDWLLDSYHAERHPVGTALLRNTEVQT 341 (493)
T ss_pred HHHHc--CCCCchhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 98775 344567899999999999999988764433
No 32
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.93 E-value=2.4e-25 Score=178.59 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=68.0
Q ss_pred ccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 107 LLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..++|+.|||+|+|||||.++|++|||+|+||+||..|+++|.+++.. +.+.+|+.|+++|++|+..++..+..+..
T Consensus 272 ~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~---~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~ 348 (392)
T PRK08243 272 VAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE---GDTALLDAYSATALRRVWKAERFSWWMTS 348 (392)
T ss_pred eeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999887542 35789999999999999999988866554
No 33
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=1.4e-25 Score=181.16 Aligned_cols=178 Identities=21% Similarity=0.164 Sum_probs=108.6
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc------chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~ 73 (193)
+||||||++|.||+.++.....+. ...++...+....... ...+..++ +.+.++++|++++. ...... +.
T Consensus 172 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~-~~ 248 (415)
T PRK07364 172 LVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHN-DIAYERFW-PSGPFAILPLPGNRCQIVWTAPHAQA-KA 248 (415)
T ss_pred EEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCC-CEEEEEec-CCCCeEEeECCCCCEEEEEECCHHHH-HH
Confidence 599999999999999977544332 2233444444332211 12222233 34456788887765 111110 11
Q ss_pred hcCCC-----hHHHhccccC----C-CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNFP-----AEKLRNGKDC----D-LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~~-----~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
+.+++ ..+.+.+... . ......+++ ....+++|.++||+|+|||||+++|+.|||+|+||+||+.
T Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~ 323 (415)
T PRK07364 249 LLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPV-----QLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAA 323 (415)
T ss_pred HHCCCHHHHHHHHHHHhhhhhcCceecCCCceecc-----hhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHH
Confidence 11111 1111111110 0 001111222 1223568999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQ-YEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|......+ ......+|+.|++.|++++..++..+..+.+
T Consensus 324 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~ 367 (415)
T PRK07364 324 LAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDR 367 (415)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998754211 1122479999999999999999988866655
No 34
>PRK06996 hypothetical protein; Provisional
Probab=99.93 E-value=2.7e-25 Score=178.64 Aligned_cols=177 Identities=14% Similarity=0.034 Sum_probs=110.3
Q ss_pred CEEecCCc-chHHHhhhCCCC-CCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc---------chhHH
Q 048694 1 ILIGCDGA-SSVVADFLKLKP-KKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL---------LIRSL 69 (193)
Q Consensus 1 lvVgADG~-~S~vR~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------~~~~~ 69 (193)
+||||||. +|.+|+.++... ....+..++.+.++.....+ ......+.+.+.+.++|+.++. ...+.
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~ 242 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP--GWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDE 242 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC--CEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHH
Confidence 69999996 588898886553 33445667777666543221 1122233445556677887542 11111
Q ss_pred HHHHhcCC-----ChHHHhccccCCCCCceeee-eeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 70 TLETIKNF-----PAEKLRNGKDCDLSSLSFTH-FRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 70 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
. +....+ ...+.+.+.... ..+.... ....+.....+++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 243 ~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~ 320 (398)
T PRK06996 243 A-ARRAALPDDAFLAELGAAFGTRM-GRFTRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHT 320 (398)
T ss_pred H-HHHHcCCHHHHHHHHHHHhcccc-CceEEecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHH
Confidence 1 111111 122222222111 1111000 0011111234558999999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|... .....+|..|+++|++++..++..+..+.+
T Consensus 321 La~~L~~~-----~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~ 358 (398)
T PRK06996 321 LADALSDH-----GATPLALATFAARRALDRRVTIGATDLLPR 358 (398)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999762 234567999999999999999999977766
No 35
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.93 E-value=2.1e-25 Score=179.41 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=114.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCc-CceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCccc------hhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKA-FASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLL------IRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~ 73 (193)
+||+|||.+|.+|+.+|...... .+...+......... .......++.+++.++++|++++.. ........
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~ 235 (403)
T PRK07333 158 LLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERP--HGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERL 235 (403)
T ss_pred EEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCC--CCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHH
Confidence 58999999999999997764322 233334443333322 1223344556667788899987761 11111111
Q ss_pred hcC----CChHHHhccccCCCCCceeee-eeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHH
Q 048694 74 IKN----FPAEKLRNGKDCDLSSLSFTH-FRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCL 148 (193)
Q Consensus 74 ~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l 148 (193)
... +...+.+.+.... ..+.... ....+.....+++|..+||+|+|||||+++|+.|||+|+||+||..|+++|
T Consensus 236 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L 314 (403)
T PRK07333 236 VALDDLVFEAELEQRFGHRL-GELKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVV 314 (403)
T ss_pred HCCCHHHHHHHHHHHhhhhc-CceEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHH
Confidence 110 1111222111110 0111000 000111123456899999999999999999999999999999999999999
Q ss_pred HhccCC-ChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 149 ARNTMP-QYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 149 ~~~~~~-~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
..+++. .....+.+|+.|+++|++++..++..+..+..
T Consensus 315 ~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 353 (403)
T PRK07333 315 VEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR 353 (403)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 886531 12346889999999999999999988866554
No 36
>PRK09126 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=179.41 Aligned_cols=178 Identities=15% Similarity=0.097 Sum_probs=114.5
Q ss_pred CEEecCCcchHHHhhhCCCCC-CcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc------chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPK-KAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~ 73 (193)
+||||||.+|.||+.+|.+.. ...+...+...+.... +.......+++.+.+++++|++++. .......+
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~- 234 (392)
T PRK09126 158 LLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEA- 234 (392)
T ss_pred EEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHH-
Confidence 589999999999999976532 2223333333333221 1123345567777788899998776 11111111
Q ss_pred hcCCC-----hHHHhccccCC-----CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNFP-----AEKLRNGKDCD-----LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
+..+. ..+.+.+.... ......+++ .....++|..+||+|+|||||+++|+.|||+|+||+||..
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~ 309 (392)
T PRK09126 235 LLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPL-----VAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDI 309 (392)
T ss_pred HHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeec-----hHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHH
Confidence 11111 11222221110 001111222 1233467889999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQ-YEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|..++... ....+.+|+.|+++|++++..++..+..+..
T Consensus 310 la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 310 LARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865311 2235789999999999999999999876655
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.93 E-value=5.1e-25 Score=176.46 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=112.9
Q ss_pred CEEecCCcchHHHhhhCCCCCC-cCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc------chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKK-AFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~ 73 (193)
+||+|||.+|.||+.++.+... ..+..++...+..... .......++.+.+.+.++|++++. .......+
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~- 234 (388)
T PRK07494 158 LVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRP--HQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAER- 234 (388)
T ss_pred EEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCC--CCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHH-
Confidence 5899999999999999876432 2344455444443322 122223344455667788987654 11111111
Q ss_pred hcCCC---------hHHHhccccCCC-CCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNFP---------AEKLRNGKDCDL-SSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
....+ ..+.+++..... .....+++. ....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-----~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~ 309 (388)
T PRK07494 235 LLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLS-----GQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVAT 309 (388)
T ss_pred HHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeech-----HHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHH
Confidence 11111 122222222110 111222222 233457889999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|..... ......+|+.|+++|+++...++..+..+.+
T Consensus 310 La~~L~~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 350 (388)
T PRK07494 310 LVEIVEDRPE--DPGSAAVLAAYDRARRPDILSRTASVDLLNR 350 (388)
T ss_pred HHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987432 3446789999999999999988887766655
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.93 E-value=5e-25 Score=176.14 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=111.5
Q ss_pred CEEecCCcchHHHhhhCCCCCC-cCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCc-c-----chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKK-AFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDK-L-----LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-----~~~~~~~~~ 73 (193)
+||||||.+|.||+.++.+.+. ..+...+...+...... ......++.+++.+.++|+.++ . .......+.
T Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 230 (382)
T TIGR01984 153 LLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH--QGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADT 230 (382)
T ss_pred EEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC--CCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHH
Confidence 5899999999999999765432 23345555554433221 1222233445556678888777 2 000000011
Q ss_pred hcCC-----ChHHHhcc----ccCC-CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNF-----PAEKLRNG----KDCD-LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~-----~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
..++ .+.+.+.+ .... ......+++. ....++|..+||+|+|||||+|+|++|||+|+||+||..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~ 305 (382)
T TIGR01984 231 IANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLK-----LRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVET 305 (382)
T ss_pred HHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecc-----hhhhhheecCCEEEEeecccccCCccccchhhhHHHHHH
Confidence 1111 11111111 1110 0111222221 234567899999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|..+.. ....+.+|+.|+++|+++...++..+..+.+
T Consensus 306 La~~L~~~~~--~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 346 (382)
T TIGR01984 306 LAEVLIDARI--DLGTYALLQEYLRRRQFDQFITIGLTDGLNR 346 (382)
T ss_pred HHHHHHHhcc--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987642 2345788999999999999999998877666
No 39
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.92 E-value=8.5e-25 Score=174.78 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=112.3
Q ss_pred CEEecCCcchHHHhhhCCCCCCc-CceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-----chhHHHHHHh
Q 048694 1 ILIGCDGASSVVADFLKLKPKKA-FASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-----LIRSLTLETI 74 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~ 74 (193)
+||+|||.+|.+|++++.+.+.. .+...+...+..+... ......++.+++.++++|++++. .......+..
T Consensus 154 ~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (385)
T TIGR01988 154 LLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERL 231 (385)
T ss_pred EEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHH
Confidence 58999999999999997554322 1233444444433221 22222344556677789998875 1111001111
Q ss_pred cCCC-----hHHHhccccCC-----CCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHH
Q 048694 75 KNFP-----AEKLRNGKDCD-----LSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVL 144 (193)
Q Consensus 75 ~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~L 144 (193)
..+. ..+.+.+.... ......+++. ....++|..+||+|+|||||+|+|+.|||+|+||+||..|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~L 306 (385)
T TIGR01988 232 LALSDEEFLAELQRAFGSRLGAITLVGERHAFPLS-----LTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAAL 306 (385)
T ss_pred HcCCHHHHHHHHHHHHhhhcCceEeccCcceeech-----hhhhhheecCceEEEecccccCCccccchhhhhHHHHHHH
Confidence 1111 11222111110 0111222221 2234578899999999999999999999999999999999
Q ss_pred HHHHHhccCCCh-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 145 ARCLARNTMPQY-EKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 145 a~~l~~~~~~~~-~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
++.|..++..+. ...+.+|+.|+++|++++..++..+..+.+
T Consensus 307 a~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~ 349 (385)
T TIGR01988 307 AEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNR 349 (385)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988653211 234789999999999999999999876665
No 40
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.92 E-value=6.8e-25 Score=175.69 Aligned_cols=184 Identities=21% Similarity=0.172 Sum_probs=113.4
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-----ch-hHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-----LI-RSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~-~~~~~~~ 73 (193)
+||+|||.+|.||+.++...+... ....+...+..+.. .......|+.++++++++|++++. .. .....+.
T Consensus 158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 235 (388)
T PRK07608 158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERP--HRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADEL 235 (388)
T ss_pred EEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCC--CCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHH
Confidence 589999999999999976543221 22233333333221 123344566777888899998876 11 1111111
Q ss_pred hcCCChHHHhccccC---CCCCceee-eeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHH
Q 048694 74 IKNFPAEKLRNGKDC---DLSSLSFT-HFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLA 149 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~ 149 (193)
...-++.+.+.+... ....+... .....+.....+++|..+||+|+|||||+|+|++|||+|+||+||..|+++|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~ 315 (388)
T PRK07608 236 LALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLA 315 (388)
T ss_pred HCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHH
Confidence 111111222222111 00011110 01111111223568899999999999999999999999999999999999998
Q ss_pred hccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 150 RNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 150 ~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
.+..........+|+.|+++|++++..++..+..+..
T Consensus 316 ~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~ 352 (388)
T PRK07608 316 GREPFRDLGDLRLLRRYERARREDILALQVATDGLQR 352 (388)
T ss_pred HhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7542111223478999999999999999998876666
No 41
>PRK06834 hypothetical protein; Provisional
Probab=99.92 E-value=8.1e-25 Score=179.53 Aligned_cols=78 Identities=31% Similarity=0.339 Sum_probs=69.9
Q ss_pred ccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048694 105 DILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILL 184 (193)
Q Consensus 105 ~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~ 184 (193)
...+++|..|||+|+|||||.++|++|||+|+||+||..|+++|..+++ +.+.+.+|+.|+++|++.+.+++..+...
T Consensus 256 ~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~--g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~ 333 (488)
T PRK06834 256 ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVK--GTSPESLLDTYHAERHPVAARVLRNTMAQ 333 (488)
T ss_pred ceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999876 34568899999999999999999877544
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.92 E-value=4.8e-24 Score=170.99 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=106.4
Q ss_pred CEEecCCcchHHHhhhCCCCC--CcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc------chh-----
Q 048694 1 ILIGCDGASSVVADFLKLKPK--KAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------LIR----- 67 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~----- 67 (193)
+||+|||.+|.||+.++.... .+. ..++...+..+... ......++.+.+...++|+.++. ...
T Consensus 160 ~vI~AdG~~S~vR~~~~~~~~~~~y~-~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~ 236 (391)
T PRK08020 160 LVIGADGANSQVRQMAGIGVHGWQYR-QSCMLISVKCENPP--GDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQ 236 (391)
T ss_pred EEEEeCCCCchhHHHcCCCccccCCC-ceEEEEEEEecCCC--CCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHH
Confidence 589999999999999976543 233 23333444433221 12222333333344567776553 011
Q ss_pred ------HHHHHHhc-CCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHH
Q 048694 68 ------SLTLETIK-NFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIED 140 (193)
Q Consensus 68 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~d 140 (193)
+.+.+.+. .+++.+..... .....+++. ...+++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~pl~-----~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~D 307 (391)
T PRK08020 237 LQAMSMAQLQQEIAAHFPARLGAVTP----VAAGAFPLT-----RRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRD 307 (391)
T ss_pred HHCCCHHHHHHHHHHHhhhhccceEe----ccccEeecc-----eeehhhhccCcEEEEechhhccCCcccchhHHHHHH
Confidence 11111111 12111111100 011122221 234568999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 141 AVVLARCLARNTMP-QYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 141 a~~La~~l~~~~~~-~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|..|+++|.+.... .......+|+.|+++|+++...++..+..+..
T Consensus 308 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 354 (391)
T PRK08020 308 VDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYA 354 (391)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876431 11235689999999999999988877765555
No 43
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.92 E-value=1.6e-24 Score=173.88 Aligned_cols=178 Identities=20% Similarity=0.183 Sum_probs=107.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc------chhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL------LIRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~ 73 (193)
+||+|||.+|.+|+.+|...+... ....+...+....+. ......++.+++.+.++|+.++. ...... +.
T Consensus 160 ~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~-~~ 236 (392)
T PRK08773 160 LAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH--QATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEA-ER 236 (392)
T ss_pred EEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC--CCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHH-HH
Confidence 589999999999999976644321 122222333332221 22333344555667788887765 111111 11
Q ss_pred hcCC-----ChHHHhccccCCC-----CCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNF-----PAEKLRNGKDCDL-----SSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
+..+ ...+.+.+..... .....+++ ....+++|..+||+|+|||||.|+|+.|||+|+||+||..
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 311 (392)
T PRK08773 237 VLALDEAAFSRELTQAFAARLGEVRVASPRTAFPL-----RRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAA 311 (392)
T ss_pred HHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeec-----hhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHH
Confidence 1111 1112222111100 00111222 1234678999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQ-YEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|.++.... +.....+|+.|+++|+++..........+..
T Consensus 312 La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~ 355 (392)
T PRK08773 312 LQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINR 355 (392)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765321 2234578999999999997766655544444
No 44
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.91 E-value=5.4e-24 Score=170.80 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=109.0
Q ss_pred CEEecCCcchHHHhhhCCCCCC-cCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-----c-hhHHHHHH
Q 048694 1 ILIGCDGASSVVADFLKLKPKK-AFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-----L-IRSLTLET 73 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~-~~~~~~~~ 73 (193)
+||+|||.+|.||+.++..... ..+...+...+...... ....+. .+.+++.++++|++++. . .... .+.
T Consensus 160 ~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~~~~~p~~~g~~~~~~~~~~~~-~~~ 236 (395)
T PRK05732 160 LLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH-QGRAFE-RFTEHGPLALLPMSDGRCSLVWCHPLED-AEE 236 (395)
T ss_pred EEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC-CCEEEE-eecCCCCEEEeECCCCCeEEEEECCHHH-HHH
Confidence 5899999999999999765332 23444555544433221 112222 23344456677877765 0 0110 011
Q ss_pred hcCCC-----hHHHhcccc----C-CCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHH
Q 048694 74 IKNFP-----AEKLRNGKD----C-DLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVV 143 (193)
Q Consensus 74 ~~~~~-----~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~ 143 (193)
+..+. ..+.+.+.. . .......+++ .....++|..+||+|+|||||.++|++|||+|+||+||..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~ 311 (395)
T PRK05732 237 VLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPL-----ALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMS 311 (395)
T ss_pred HHcCCHHHHHHHHHHHHHhhhcceeecCCcceecc-----cccchhhhccCcEEEEeecccccCCccccccchHHHHHHH
Confidence 11111 111111110 0 0001111211 1223457889999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 144 LARCLARNTMPQ-YEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 144 La~~l~~~~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
|+++|..++... ....+++|+.|+++|+++...++..+..+.+
T Consensus 312 La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~ 355 (395)
T PRK05732 312 LAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVR 355 (395)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765321 1223588999999999999999998877666
No 45
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.89 E-value=8.7e-22 Score=147.38 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=131.8
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc----------------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL---------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------- 64 (193)
|+|.|||..|..||.+.... ......+.|..-..-..+.+...+.++++...+++|+++.++
T Consensus 4 LtivaDG~~S~fRk~l~~~~--~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~ 81 (276)
T PF08491_consen 4 LTIVADGCFSKFRKELSDNK--PQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVS 81 (276)
T ss_pred EEEEecCCchHHHHhhcCCC--CceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCcc
Confidence 68999999999999997333 333444556544444445566777888888889999999887
Q ss_pred --chhHHHHHHh-cCCChHHHhccccC-CCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHH
Q 048694 65 --LIRSLTLETI-KNFPAEKLRNGKDC-DLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIED 140 (193)
Q Consensus 65 --~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~d 140 (193)
+.++++.+.. ..+++.+++.+..+ +...+...+.++.++. ....++++++|||++..+|.+|+||+.|+.|
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 1233333332 25677777665543 2235555555555543 2346899999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH
Q 048694 141 AVVLARCLARNTM-PQYEKIGEALDEYVKERRTRLLDWLLKLILLVH-FR 188 (193)
Q Consensus 141 a~~La~~l~~~~~-~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-~~ 188 (193)
+..|++.|...-. .+...+.++++.|..+|++...-+.-.+..+|. |.
T Consensus 157 v~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~ 206 (276)
T PF08491_consen 157 VVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFA 206 (276)
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 9999999988721 236678899999999999999987777777776 53
No 46
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.89 E-value=2.3e-22 Score=172.73 Aligned_cols=75 Identities=31% Similarity=0.375 Sum_probs=68.2
Q ss_pred cccccCCc----EEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048694 108 LGRLQKGT----VTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLIL 183 (193)
Q Consensus 108 ~~~~~~~~----v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~ 183 (193)
.++|+.+| |+|+|||||+|+|+.|||+|+||+||..|+++|... ..+++.+|+.|++.|++++..+++.|..
T Consensus 259 ~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~----~~~~~~al~~ye~~R~~r~~~~~~~s~~ 334 (765)
T PRK08255 259 CERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH----PGDLPAALAAYEEERRVEVLRIQNAARN 334 (765)
T ss_pred cCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999 999999999999999999999999999999999874 2368899999999999999999999986
Q ss_pred HHH
Q 048694 184 LVH 186 (193)
Q Consensus 184 ~~~ 186 (193)
...
T Consensus 335 ~~~ 337 (765)
T PRK08255 335 STE 337 (765)
T ss_pred hCc
Confidence 655
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.85 E-value=2.6e-20 Score=151.41 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=106.7
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCC--CCCccceeeEec----CCceEEEeecCCccc-------hh
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNG--HGLPQEIVRMRN----DHILCGTIPINDKLL-------IR 67 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~-------~~ 67 (193)
+||||||++|.||+.++... ......++..+..+.. ........++++ ++++.|+||.++... ..
T Consensus 190 ~VIgADG~~S~vrr~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~VG~g~~~~~ 267 (450)
T PLN00093 190 AVIGADGANSRVAKDIDAGD--YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVVNK 267 (450)
T ss_pred EEEEcCCcchHHHHHhCCCC--cceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEEEEEEEccCC
Confidence 59999999999999997653 2222344433333321 111223445544 567899999986531 00
Q ss_pred HHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHH
Q 048694 68 SLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147 (193)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~ 147 (193)
..+.+..+.+...+...+... ..... .....|. ...++|..+|++|+|||||.++|++|+|++.||++|..+|+.
T Consensus 268 ~~~~~~~~~l~~~~~~~l~~~---~~~~~-~~~~ip~-~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~ 342 (450)
T PLN00093 268 PAIKKYQRATRNRAKDKIAGG---KIIRV-EAHPIPE-HPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEA 342 (450)
T ss_pred CChHHHHHHHHHHhhhhcCCC---eEEEE-EEEEccc-ccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHH
Confidence 011111100001111111111 11111 1111222 123467789999999999999999999999999999999999
Q ss_pred HHhccCCChhh-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 148 LARNTMPQYEK-IGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 148 l~~~~~~~~~~-~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+.+.+..+..+ ....|+.|++..+......+..+..+.+
T Consensus 343 i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~ 382 (450)
T PLN00093 343 IVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQK 382 (450)
T ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876421111 2466899999888777777777766655
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.84 E-value=5.3e-20 Score=147.88 Aligned_cols=179 Identities=15% Similarity=0.059 Sum_probs=106.2
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCC--CCCccceeeEec----CCceEEEeecCCccc-------hh
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNG--HGLPQEIVRMRN----DHILCGTIPINDKLL-------IR 67 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~-------~~ 67 (193)
+||||||.+|.||+.+|... ......+...+..+.. ........++++ +++++|+||.++... ..
T Consensus 151 ~VIgADG~~S~v~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~~~ 228 (398)
T TIGR02028 151 AVIGADGANSRVAKEIDAGD--YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVAAK 228 (398)
T ss_pred EEEECCCcchHHHHHhCCCC--cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCCCC
Confidence 58999999999999997642 2222333333333322 111223444543 677999999986530 11
Q ss_pred HHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHH
Q 048694 68 SLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARC 147 (193)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~ 147 (193)
..+.+..+.+.......+... ..... .....|.. ..++|..+|++|+|||||.++|++|+|+++||++|..+|+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~---~~~~~-~~~~ip~~-~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~ 303 (398)
T TIGR02028 229 PEIKRLQSGIRARAAGKVAGG---RIIRV-EAHPIPEH-PRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEA 303 (398)
T ss_pred ccHHHHHHhhhhhhhhccCCC---cEEEE-EEEecccc-ccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHH
Confidence 111111111111011101000 11110 11112221 23467789999999999999999999999999999999999
Q ss_pred HHhccCCCh-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 148 LARNTMPQY-EKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 148 l~~~~~~~~-~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+.+.+..+. ......|+.|++..+....+.+..+..+.+
T Consensus 304 i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~ 343 (398)
T TIGR02028 304 IVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQR 343 (398)
T ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764211 123567999999877777777777766555
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.83 E-value=6.1e-19 Score=141.44 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=103.0
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCC--CCCccceeeEe----cCCceEEEeecCCccch--------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNG--HGLPQEIVRMR----NDHILCGTIPINDKLLI-------- 66 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~p~~~~~~~-------- 66 (193)
+||||||.+|.||+.++.+.+ .....+++..+..+.. ...++...+++ .+++++|++|.++....
T Consensus 146 ~VI~AdG~~S~v~r~lg~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~~ 224 (388)
T TIGR02023 146 VVIGADGANSPVAKELGLPKN-LPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTHG 224 (388)
T ss_pred EEEECCCCCcHHHHHcCCCCC-CcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCCC
Confidence 589999999999999976532 2222344444433321 11123334443 45678999999865411
Q ss_pred --hHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHH
Q 048694 67 --RSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVL 144 (193)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~L 144 (193)
...+.+.+ .+.+. ....... .......|+ ...++|..+|++|+|||||.++|++|+|+++||++|..+
T Consensus 225 ~~~~~~~~~l-------~~~~~-~~~~~~~-~~~~~~ip~-~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~a 294 (388)
T TIGR02023 225 FDAKQLQANL-------RRRAG-LDGGQTI-RREAAPIPM-KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMA 294 (388)
T ss_pred CCHHHHHHHH-------HHhhC-CCCceEe-eeeeEeccc-cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHH
Confidence 11111111 11111 0000111 000111222 123467789999999999999999999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 048694 145 ARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLI 182 (193)
Q Consensus 145 a~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~ 182 (193)
++.+.+.+..+ ....|+.|+++.+......+..+.
T Consensus 295 a~~i~~~l~~~---~~~~L~~Y~~~~~~~~~~~~~~~~ 329 (388)
T TIGR02023 295 AQAIAEYLQNG---DATDLRHYERKFMKLYGTTFRVLR 329 (388)
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877521 246799999998877766665543
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.80 E-value=3.6e-19 Score=137.30 Aligned_cols=143 Identities=22% Similarity=0.220 Sum_probs=84.4
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccceeeEec----CCceEEEeecCCcc----------ch
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRN----DHILCGTIPINDKL----------LI 66 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~----------~~ 66 (193)
+||+|||.+|.+|+.++...........++..++.+...........+.+ ++.+.+++|++++. ..
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~ 218 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEE 218 (295)
T ss_pred EEEECCCcchHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCC
Confidence 48999999999999987654222222344444444432222233344433 35678899998875 01
Q ss_pred hHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHH
Q 048694 67 RSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLAR 146 (193)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~ 146 (193)
.....+.+.++...... +........ .....+......+|.++||+|+|||||+++|+.|||+|+||+||..+++
T Consensus 219 ~~~~~~~~~~~~~~~~~-l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~ 293 (295)
T TIGR02032 219 GEDLKKYLKDFLARRPE-LKDAETVEV----IGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAE 293 (295)
T ss_pred CCCHHHHHHHHHHhCcc-cccCcEEee----eceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHh
Confidence 11222222222211111 111111111 1112233333457889999999999999999999999999999999998
Q ss_pred HH
Q 048694 147 CL 148 (193)
Q Consensus 147 ~l 148 (193)
+|
T Consensus 294 ~~ 295 (295)
T TIGR02032 294 VI 295 (295)
T ss_pred hC
Confidence 74
No 51
>PRK11445 putative oxidoreductase; Provisional
Probab=99.78 E-value=8.6e-18 Score=133.14 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=53.1
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHH---HHHHHHH
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLL---KLILLVH 186 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~---~s~~~~~ 186 (193)
.++||+|||||||.++|++|+|+++|++|+..|++.|.+.. +..++.|++.++.-..++.. ++..+|.
T Consensus 262 ~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 332 (351)
T PRK11445 262 GKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-------EKLNTAYWRKTRKLRLKLFGKILKSPFMYN 332 (351)
T ss_pred CCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 45899999999999999999999999999999999997642 45688898876555444332 3344444
No 52
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.73 E-value=1e-17 Score=130.07 Aligned_cols=184 Identities=22% Similarity=0.180 Sum_probs=113.5
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc-----chhHHHHHHh
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL-----LIRSLTLETI 74 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~ 74 (193)
|+|||||.||+||+..+++...+. ...+..+..........+...+..|-+.+.+.+.|+.++. ....+....+
T Consensus 208 LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~a~~L 287 (481)
T KOG3855|consen 208 LLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPENASIL 287 (481)
T ss_pred eeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeecccccccccceeecCHHHHHHH
Confidence 689999999999999988766554 2334445555554334444455556666667789988876 0000001111
Q ss_pred cCCChH-H--------------------------------HhccccCC-------CCCc--eeeeeeeecCccc-ccccc
Q 048694 75 KNFPAE-K--------------------------------LRNGKDCD-------LSSL--SFTHFRYRAPWDI-LLGRL 111 (193)
Q Consensus 75 ~~~~~~-~--------------------------------~~~~~~~~-------~~~~--~~~~~~~~~~~~~-~~~~~ 111 (193)
..++++ + ..++.... +..+ .....+..+|+.. .++.+
T Consensus 288 ~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~y 367 (481)
T KOG3855|consen 288 KSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEY 367 (481)
T ss_pred hcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHh
Confidence 111000 0 01111110 0011 0122233344432 44578
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMP-QYEKIGEALDEYVKERRTRLLDWLLKLILL 184 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~-~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~ 184 (193)
...|+.|+|||||-++|..|||.|+++.|+..|.+.|+++... -+.....-|+.|+.+|.+.-..+.-....+
T Consensus 368 V~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl 441 (481)
T KOG3855|consen 368 VTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKL 441 (481)
T ss_pred cCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHH
Confidence 8999999999999999999999999999999999999887652 223335668999999977766665544433
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.61 E-value=3.6e-14 Score=114.23 Aligned_cols=170 Identities=24% Similarity=0.221 Sum_probs=99.5
Q ss_pred CEEecCCcchHHHhhhCCCCCCcC-ceeEEEEEeeCCCCCCCccceee-E---ecCCceEEEeecCCcc------chhH-
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAF-ASCAVRAFTDYPNGHGLPQEIVR-M---RNDHILCGTIPINDKL------LIRS- 68 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~p~~~~~------~~~~- 68 (193)
+||+|||.+|.+++.+|....... ....+.-+...+.. . ...... + ..++++.|+||..++. ....
T Consensus 143 ~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~-~-~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~ 220 (396)
T COG0644 143 VVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDD-G-DVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD 220 (396)
T ss_pred EEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCC-C-ceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC
Confidence 589999999999999977622111 22333333333311 1 111222 2 3578899999999985 0111
Q ss_pred -------HHHHHhcCCChHHHhccccCCCCCceeeeeeeecCccccccc-ccCCcEEEecccCCCCCCCccchhhhhHHH
Q 048694 69 -------LTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGR-LQKGTVTVAGDSMHVMAPFIGQGGSAGIED 140 (193)
Q Consensus 69 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~LiGDAAh~~~P~~g~G~~~al~d 140 (193)
...+.|..-+ .....+... .. ........|....... +..+|++||||||..++|++|.|+..||..
T Consensus 221 ~~~~~~~~~l~~f~~~~-~~~~~~~~~---~~-~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~s 295 (396)
T COG0644 221 PSLSPFLELLERFKEHP-AIRKLLLGG---KI-LEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKS 295 (396)
T ss_pred cCCCchHHHHHHHHhCc-ccchhccCC---ce-EEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHH
Confidence 1111111111 111111100 11 1111112233222333 578899999999999999999999999999
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 048694 141 AVVLARCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKL 181 (193)
Q Consensus 141 a~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 181 (193)
|..+|+.+.+....+ ...|..|++..+..........
T Consensus 296 g~~Aa~~i~~~~~~~----~~~l~~Y~~~~~~~~~~~~~~~ 332 (396)
T COG0644 296 GKLAAEAIAEALEGG----EEALAEYERLLRKSLAREDLKS 332 (396)
T ss_pred HHHHHHHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876421 5667778887665555544444
No 54
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.58 E-value=5.7e-14 Score=112.72 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=49.0
Q ss_pred ccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 048694 111 LQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRT 172 (193)
Q Consensus 111 ~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~ 172 (193)
+.++|++++|||||+++|.+|+|++.|++++..|++.|.+++..+ .+.+++.|++..++
T Consensus 259 ~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~ 317 (388)
T TIGR01790 259 FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS---SELATAAWDGLWPT 317 (388)
T ss_pred ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHhchH
Confidence 368999999999999999999999999999999999998876432 35667777655333
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.54 E-value=3.9e-13 Score=104.20 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=125.2
Q ss_pred CEEecCCcchHHHhhhCCCCCCcCceeEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCcc----------------
Q 048694 1 ILIGCDGASSVVADFLKLKPKKAFASCAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKL---------------- 64 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------- 64 (193)
|-|.|||-.|.+||.+-.+.... -...+.|++...-..+.+...+.++++....+++|++..+
T Consensus 199 LTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~ 277 (509)
T KOG1298|consen 199 LTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIA 277 (509)
T ss_pred eEEEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCccc
Confidence 46899999999999984322111 1122334443333444566777888888888899998876
Q ss_pred --chhHHHHHHhc-CCChHHHhccccC-CCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHH
Q 048694 65 --LIRSLTLETIK-NFPAEKLRNGKDC-DLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIED 140 (193)
Q Consensus 65 --~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~d 140 (193)
+....+.+... +.|+.+++.+..+ +.+.+...+.+..++- .-.+.+++|+|||...-+|.+|.||..|+-|
T Consensus 278 ~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~-----~~~~~G~illGDAfNMRHPltggGMtV~l~D 352 (509)
T KOG1298|consen 278 NGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPAT-----LNDKKGVILLGDAFNMRHPLTGGGMTVALSD 352 (509)
T ss_pred chhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCC-----cCCCCceEEEcccccccCCccCCceEeehhH
Confidence 23344444433 5566666665443 3334444444444432 2347899999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 141 AVVLARCLARNTM-PQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 141 a~~La~~l~~~~~-~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
...|.+.|....+ .+.+.+.+.++.|--.|++...-+.-.+..++.
T Consensus 353 i~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~ 399 (509)
T KOG1298|consen 353 IVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQ 399 (509)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 9999999987443 346778888999999999977776666666665
No 56
>PRK10015 oxidoreductase; Provisional
Probab=99.50 E-value=2.6e-13 Score=110.22 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=52.0
Q ss_pred ccccCCcEEEecccCCCCC--CCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 048694 109 GRLQKGTVTVAGDSMHVMA--PFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTR 173 (193)
Q Consensus 109 ~~~~~~~v~LiGDAAh~~~--P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~ 173 (193)
++.+.+|++++||||..++ |++|+|+++||.++..+|+.+.+++.. .+-....|+.|++..+..
T Consensus 290 ~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~-~d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 290 PQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKER-ADFSASSLAQYKRELEQS 355 (429)
T ss_pred CccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhc-CCCccccHHHHHHHHHHC
Confidence 4567899999999999998 569999999999999999999887752 122356679999876644
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.43 E-value=2.8e-12 Score=104.23 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=53.0
Q ss_pred cccCCcEEEecccCCCCCC--CccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhH
Q 048694 110 RLQKGTVTVAGDSMHVMAP--FIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERRTRL 174 (193)
Q Consensus 110 ~~~~~~v~LiGDAAh~~~P--~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~~~~ 174 (193)
+...++++++||||..++| ++|+|++.||.++..+|+.+.+.+.. .+.....|+.|++.-+..+
T Consensus 291 ~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~-~~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 291 ELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS-DDFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc-CCcchhhHHHHHHHHHHhH
Confidence 4567999999999999998 69999999999999999999887753 2234567899998766555
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.33 E-value=1.5e-11 Score=98.16 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHH-hccCCChhhHHHHHHHHHHHHHHhHHHHHH
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLA-RNTMPQYEKIGEALDEYVKERRTRLLDWLL 179 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~-~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~ 179 (193)
.++|+++|||||.++|.+|+|++.|++|+..|++.+. . ...+..++..|...|+++......
T Consensus 250 ~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 312 (370)
T TIGR01789 250 VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS-----SEQLAAFIDSRARRHWSKTGYYRL 312 (370)
T ss_pred CCceeeeecccccccccccccHHHHHHHHHHHHhccCcC-----ccchhhhhhHHHHHHHHHhHHHHH
Confidence 4569999999999999999999999999999999985 3 334556678888887666654443
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.24 E-value=3.1e-10 Score=94.06 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=51.7
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCCh--------hhHHHHHHHHHHHHHHhH
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQY--------EKIGEALDEYVKERRTRL 174 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~--------~~~~~~l~~y~~~r~~~~ 174 (193)
.++++++||||..++|.+|.|+..++.+|..+|+.+.+.+..+. ...+..++.|++......
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~ 440 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQER 440 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHH
Confidence 68999999999999999999999999999999999999886422 245677888887654433
No 60
>PLN02463 lycopene beta cyclase
Probab=99.03 E-value=2.5e-09 Score=87.19 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=39.6
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
..+|++++||||..++|.+|.|+..++..+..+|+.+.++++
T Consensus 292 ~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~ 333 (447)
T PLN02463 292 IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLG 333 (447)
T ss_pred CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999999999998876
No 61
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.02 E-value=7.3e-10 Score=90.65 Aligned_cols=167 Identities=16% Similarity=0.080 Sum_probs=92.9
Q ss_pred CEEecCCcchHHHhh-hCCCCCCcCc-e---eEEEEEeeCCCCCCCccceeeEecCCceEEEeecCCccc----------
Q 048694 1 ILIGCDGASSVVADF-LKLKPKKAFA-S---CAVRAFTDYPNGHGLPQEIVRMRNDHILCGTIPINDKLL---------- 65 (193)
Q Consensus 1 lvVgADG~~S~vR~~-~g~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------- 65 (193)
+||.|.|.+|.+.++ ++.+...+.. . .++........ ...+.......+.+..|.+|+.++..
T Consensus 202 ~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~~ 279 (454)
T PF04820_consen 202 FFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQVPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGSGYVYSSDFI 279 (454)
T ss_dssp EEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SS--CTTSSEEEEEESSEEEEEEEESSEEEEEEEEETTTS
T ss_pred EEEECCCccchhhHhhhcCCCccccccccccEEEEEecCcCC--CCCCceeEEecCCceEEEccCCCcceEEEEeccccC
Confidence 589999999999666 3333222221 1 22222222222 22333334455667888999998761
Q ss_pred hhHHHHHHhcCCChHHHhccccCCCCCceeeeeeeecCcccccccccCCcEEEecccCCCCCCCccchhhhhHHHHHHHH
Q 048694 66 IRSLTLETIKNFPAEKLRNGKDCDLSSLSFTHFRYRAPWDILLGRLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLA 145 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La 145 (193)
..+...+. +.+.+............... . ...+...+|+++|||||.+++|+.++|+.+++..+..|+
T Consensus 280 s~~~A~~~-------l~~~l~~~~~~~~~~i~~~~----g-~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~ 347 (454)
T PF04820_consen 280 SDDEAEAE-------LLAYLGGSPEAEPRHIRFRS----G-RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALA 347 (454)
T ss_dssp HHHHHHHH-------HHHHHTCHCTTSCEEEE-S-----E-EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-------HHHhcchhhhcchhhhcccc----c-chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHH
Confidence 11111111 11111111000001111100 0 122334688999999999999999999999999888888
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048694 146 RCLARNTMPQYEKIGEALDEYVKERRTRLLDWLLKLILLVH 186 (193)
Q Consensus 146 ~~l~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 186 (193)
+.|... ...+.+++.|++..+.....+.+.....|.
T Consensus 348 ~~l~~~-----~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 348 EALPDD-----DFSPAALDRYNRRMRREYERIRDFISLHYQ 383 (454)
T ss_dssp HTHHCT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888762 223678899999988888888877766665
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.11 E-value=4.3e-05 Score=61.32 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=35.6
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
..++++.+|+|++.++|.+|.++..+++.+..+++.|.+
T Consensus 252 ~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 252 FGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred cCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999998876
No 63
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=82.26 E-value=2.5 Score=25.70 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred ecccCCCCCCCccchhhhhHHHHH-HHHHHHHh
Q 048694 119 AGDSMHVMAPFIGQGGSAGIEDAV-VLARCLAR 150 (193)
Q Consensus 119 iGDAAh~~~P~~g~G~~~al~da~-~La~~l~~ 150 (193)
+|-|-+.|+|..=+..+.||+||. .|....+.
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999998 77776655
No 64
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=69.72 E-value=7.1 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=26.0
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHH
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCL 148 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l 148 (193)
+|+.|+||..+...+ .|++.|+..|...|+.|
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 699999998776444 59999999999999876
No 65
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=68.19 E-value=56 Score=26.43 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=17.8
Q ss_pred CccchhhhhHHHHHHHHHHHHh
Q 048694 129 FIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 129 ~~g~G~~~al~da~~La~~l~~ 150 (193)
+.|.|+.+|-.-+..+++.+..
T Consensus 363 ~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 363 WGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred cCCcchhhchHHHHHHHHHHhC
Confidence 5678888888888888888754
No 66
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.13 E-value=9.3 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=25.9
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|+.+||+++... .-+..|+.++..+|..+.+
T Consensus 265 ~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 265 VPGVFAAGDVRDKGY----RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCEEEeecccCcch----hhhhhhhhhHHHHHHHHHh
Confidence 478999999997522 2366888888888887765
No 67
>PRK07233 hypothetical protein; Provisional
Probab=64.93 E-value=10 Score=30.82 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=28.1
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.+|+.++||. .....+.+|..|+++|..+|+.+.+.
T Consensus 395 ~~~l~~aG~~---~~~~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 395 IEGLYLAGMS---QIYPEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred cCCEEEeCCc---ccCCccCchhHHHHHHHHHHHHHhhh
Confidence 3799999992 22334578999999999999988663
No 68
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=64.15 E-value=11 Score=29.94 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++...++....-...|+..|..++..|...+.
T Consensus 271 ~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 271 HPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred CCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 47999999999765332333346799999999988876554
No 69
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=62.73 E-value=10 Score=31.32 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=28.0
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
+++.++||. +.|.|++-||.+|..+|+.+.+.
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIAT 460 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHHH
Confidence 799999999 55678999999999999998764
No 70
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=61.76 E-value=14 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.0
Q ss_pred cCCcEEEecccCCCCC----CCccchhhhhHHHHHHHHHHHHhccC
Q 048694 112 QKGTVTVAGDSMHVMA----PFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~----P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
..++|+.+||+|.+.+ |-++| .|++.|..+++-|...++
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ---~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQ---AAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhH---HHHHHHHHHHHHHHHHhc
Confidence 4578999999999987 45555 578889999988877665
No 71
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=57.57 E-value=15 Score=30.73 Aligned_cols=32 Identities=28% Similarity=0.199 Sum_probs=28.0
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.|+.|+|+.+|. |.|+..++..|..+++.+..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFP-----GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 699999999863 88999999999999998865
No 72
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=57.56 E-value=15 Score=30.71 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.1
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
+++.|+|+.+|+ |.|+..++..+..+++.|.+
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 699999999865 78999999999999998854
No 73
>PLN02976 amine oxidase
Probab=56.41 E-value=40 Score=32.78 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=35.4
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHH
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMP--QYEKIGEALDEYVKE 169 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~--~~~~~~~~l~~y~~~ 169 (193)
..+||+++|+|.+.-.|-+-+ -|++.|...|..|...+.. .......+++.+++.
T Consensus 1149 VggRLFFAGEATS~~~pGTVH---GAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~ 1205 (1713)
T PLN02976 1149 VENCLFFAGEATCKEHPDTVG---GAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRH 1205 (1713)
T ss_pred CCCcEEEEehhhhCCCcchHH---HHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhh
Confidence 356899999998876664444 4788888888777666642 122334555555443
No 74
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=56.32 E-value=13 Score=30.21 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCcEEEecccCCCCCCCccch-----hhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQG-----GSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G-----~~~al~da~~La~~l~~ 150 (193)
.++|+.+||+|...+| .|.- .+.|.+.|..+|+.+..
T Consensus 267 ~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 267 DPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 5799999999987777 5532 37899999999998854
No 75
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=55.19 E-value=19 Score=30.19 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.7
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++.|+|+.+|. |.|+..++..|..+|+.|.+-
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 459 DNLYLVGAGTHP-----GAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCEEEeCCCCCC-----CCCHHHHHHHHHHHHHHHHhh
Confidence 699999999754 889999999999999998763
No 76
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=53.98 E-value=23 Score=29.07 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=28.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++..-.+-...-...|++.|..+|+.|...+.
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 47899999999863321222345688888888888866543
No 77
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.51 E-value=19 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=27.1
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.++|+.+||+++. |. -+..|+.+|..++..+.+.+
T Consensus 315 ~~~vyaiGD~~~~--~~---~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 315 REGVFAAGDVVTG--PS---KIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCEEEEcccccC--cc---hHHHHHHHHHHHHHHHHHHH
Confidence 4799999999874 21 35789999999998887654
No 78
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=52.62 E-value=20 Score=29.51 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=27.4
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
+++.++||.. .|-|++.+|.+|..+|+.+.+.
T Consensus 428 ~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~ 459 (462)
T TIGR00562 428 PGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTF 459 (462)
T ss_pred CCEEEecccc------CCCcHHHHHHHHHHHHHHHHHh
Confidence 5999999983 4679999999999999988764
No 79
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=44.06 E-value=35 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=26.1
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHH
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLA 149 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~ 149 (193)
.+++.++||..+.-.| ..+.-|+++|..+|+.|.
T Consensus 385 ~~~l~~aGd~~~~~~~---~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 385 WPNLFLAGDWTATGWP---ATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCEEEecccccCCCc---chHHHHHHHHHHHHHHHh
Confidence 3789999999876323 377788888888888764
No 80
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=44.04 E-value=34 Score=27.97 Aligned_cols=31 Identities=32% Similarity=0.217 Sum_probs=25.1
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
+++.++||.. .|-|++.|+++|..+|+.+..
T Consensus 420 ~~l~~aG~~~------~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 420 PGLYVAGASF------EGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCEEEECccc------CCccHHHHHHHHHHHHHHHHh
Confidence 5899999984 244899999999999987743
No 81
>PRK13984 putative oxidoreductase; Provisional
Probab=43.09 E-value=32 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=28.0
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||+++.. .+..|+.++..+|..|.+.+.
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 46999999998642 367799999999999877553
No 82
>PLN02612 phytoene desaturase
Probab=42.34 E-value=34 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.1
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
+|+.|+||....-.| .+++-|+..+..+|+.|.+.
T Consensus 513 ~~l~lAGd~t~~~~~---~smeGAv~SG~~AA~~I~~~ 547 (567)
T PLN02612 513 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQSIVQD 547 (567)
T ss_pred CCEEEeecceeCCch---hhHHHHHHHHHHHHHHHHHH
Confidence 689999999644322 38999999999999988764
No 83
>PLN02568 polyamine oxidase
Probab=41.34 E-value=36 Score=29.08 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=28.5
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
++|+++|+|.|...|-+ +.-|++++...|+.|...++
T Consensus 500 ~~l~FAGEat~~~~~~T---v~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 500 LQLLFAGEATHRTHYST---THGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ccEEEeecccCCCccch---HHHHHHHHHHHHHHHHHHhc
Confidence 48999999988876644 44588889888888876543
No 84
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=41.26 E-value=45 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|+.+||++.. ..-+..|+.++..+|..+.+
T Consensus 415 ~~~VfA~GD~~~g-----~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 415 IPGVFAGGDIILG-----AATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CCCEEEecCCCCC-----cHHHHHHHHHHHHHHHHHHh
Confidence 4789999999852 22457899999999988865
No 85
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=41.10 E-value=1.8e+02 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=17.5
Q ss_pred CccchhhhhHHHHHHHHHHHHh
Q 048694 129 FIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 129 ~~g~G~~~al~da~~La~~l~~ 150 (193)
++|.|+.+|-.-|..+++.|..
T Consensus 338 ~~g~G~~~~p~~g~~la~li~~ 359 (380)
T TIGR01377 338 FSGHGFKLAPVVGKILAELAMK 359 (380)
T ss_pred CCccceeccHHHHHHHHHHHhc
Confidence 5677888888888888888855
No 86
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=40.97 E-value=39 Score=28.04 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=27.7
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++.. ..-+..|+.++..+|..+...+.
T Consensus 417 ~~~VfA~GD~~~~-----~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 417 LPGVFAGGDIVTG-----AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCEEEeCCcCCC-----chHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999842 13467899999999998877554
No 87
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=40.71 E-value=40 Score=28.15 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=28.0
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||+++. | .-+..|+.++..+|..+.+.+.
T Consensus 430 ~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 430 NPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999872 1 1356799999999999877654
No 88
>PLN02576 protoporphyrinogen oxidase
Probab=40.11 E-value=42 Score=28.03 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=27.8
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
+++.++||... |-|++-||++|..+|+.+...
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISY 486 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHH
Confidence 69999999975 559999999999999998763
No 89
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=39.83 E-value=43 Score=26.72 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=31.2
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.++||.++| ++|+.|+|...+-|+...+.-.+.+..
T Consensus 197 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAi~~~~ 232 (329)
T PRK01909 197 AAPRILVTG-----LNPHAGENGYLGREEIDVIEPALARAR 232 (329)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 368998877 999999999999999999998887643
No 90
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=38.87 E-value=46 Score=26.42 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=30.9
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++||.++| ++|+.|+|...+-|+.....-.+.+.
T Consensus 194 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~ 228 (320)
T TIGR00557 194 ARPRIAVAG-----LNPHAGEGGHLGREEIDIIIPALEAL 228 (320)
T ss_pred CCCCEEEEe-----cCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 368998777 99999999999999999999888764
No 91
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=38.74 E-value=44 Score=26.72 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=30.8
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++||.++| ++|+.|+|...+-|+...+.-.+.+.
T Consensus 206 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~ 240 (336)
T PRK05312 206 ASPRLAVAG-----LNPHAGEGGALGREDIDIIAPAIEQL 240 (336)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 357998777 99999999999999999999888764
No 92
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=38.27 E-value=46 Score=26.49 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.5
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++||.++| +||+.|+|...+-|+...+.-.+.+.
T Consensus 200 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAi~~~ 234 (326)
T PRK03371 200 VKPRIAVAG-----VNPHAGENGLFGDEEIRIVTPAIEAM 234 (326)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 368898776 99999999999999999999888764
No 93
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=38.12 E-value=46 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=31.1
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.++||.++| +||+.|+|...+-|+-..+.-.+.+..
T Consensus 201 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~ 236 (332)
T PRK00232 201 AEPRIAVCG-----LNPHAGEGGHFGREEIDIIIPALEELR 236 (332)
T ss_pred CCCcEEEEe-----eCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457898777 999999999999999999998887643
No 94
>COG3798 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.32 E-value=16 Score=21.68 Aligned_cols=8 Identities=38% Similarity=0.945 Sum_probs=6.7
Q ss_pred EEecCCcc
Q 048694 2 LIGCDGAS 9 (193)
Q Consensus 2 vVgADG~~ 9 (193)
||||||.|
T Consensus 13 Vv~aDG~h 20 (75)
T COG3798 13 VVGADGKH 20 (75)
T ss_pred eecCCCcE
Confidence 78899877
No 95
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=34.96 E-value=43 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=27.9
Q ss_pred CCcEEEecccCCCCCCCccch-----hhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQG-----GSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G-----~~~al~da~~La~~l~~ 150 (193)
.++|+.+||++...++..|.. ...|...|..+++.|..
T Consensus 261 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 261 VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 478999999998766554432 35678888888887753
No 96
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=34.77 E-value=55 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.7
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++||.++| ++|+.|+|...+-|+...+.-.+.+.
T Consensus 201 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~ 235 (332)
T PRK03743 201 KNPKIAVAG-----LNPHSGEHGLFGDEEVDEIIPAVEAA 235 (332)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 368998777 99999999999999999999888764
No 97
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=34.59 E-value=55 Score=26.31 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=30.5
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.++||.++| ++|+.|+|...+-|+...+.-.+++.
T Consensus 204 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAIe~~ 238 (345)
T PRK02746 204 EKPRIAIAG-----LNPHAGEQGQLGTEEKDWLIPWLESW 238 (345)
T ss_pred CCCcEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 368998777 99999999999999999998888764
No 98
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=32.79 E-value=77 Score=26.48 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.++|+.+||++... .-+..|+.++..+|..+.+.+
T Consensus 431 ~~gVfa~GD~~~~~-----~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 431 NPKIFAGGDAVRGA-----DLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCEEEECCcCCCc-----cHHHHHHHHHHHHHHHHHHHh
Confidence 46899999997632 134679999999998887643
No 99
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=32.72 E-value=58 Score=25.89 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=30.3
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
..+|+..+| +||+.|+|...+-|+-..+.-.+.+.
T Consensus 200 ~~PriaVaG-----LNPHaGE~G~lG~EE~diI~Paie~a 234 (332)
T COG1995 200 AEPRIAVAG-----LNPHAGEGGLLGREEIDIIIPAIEEA 234 (332)
T ss_pred CCcceEEec-----cCCCCCcCCCCCchhHHHHHHHHHHH
Confidence 467998888 99999999999999999988777654
No 100
>PRK12831 putative oxidoreductase; Provisional
Probab=32.66 E-value=73 Score=26.60 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=28.3
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++.. | ..+..|+.++..+|..+.+.+.
T Consensus 426 ~pgVfAaGD~~~g--~---~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 426 KEGVFAGGDAVTG--A---ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCCEEEeCCCCCC--c---hHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999753 2 2467899999999999977653
No 101
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=31.66 E-value=58 Score=27.28 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=27.1
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHH
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCL 148 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l 148 (193)
.+|++|+||--..--| .+|+-|++.+...|+.+
T Consensus 441 ~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 441 ISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 3699999998876555 49999999999888865
No 102
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=31.24 E-value=58 Score=27.18 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=44.8
Q ss_pred cccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHH--HHHHHHHHHHH
Q 048694 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIG--EALDEYVKERR 171 (193)
Q Consensus 110 ~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~--~~l~~y~~~r~ 171 (193)
+..-++=+|||=+|.+|+---=.|..+||.++..+|+.+-+.+.+....-. -.+..|++.-+
T Consensus 380 kl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlk 443 (621)
T KOG2415|consen 380 KLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLK 443 (621)
T ss_pred ccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhh
Confidence 344567789999999999888889999999999999999877753221111 11457776543
No 103
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=31.19 E-value=74 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.052 Sum_probs=28.2
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++.. ...+..|+.++..+|..+.+.+.
T Consensus 444 ~~gVfAaGD~~~g-----~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 444 IPGVFAAGDCRRG-----QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCCEEEeeccCCC-----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999742 12467799999999999988664
No 104
>PLN02268 probable polyamine oxidase
Probab=31.16 E-value=68 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=26.0
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
+|++++||+.+...| .-|.-|++.+...|+.+..
T Consensus 399 ~~l~FAGe~ts~~~~---g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 399 DNLFFAGEATSSDFP---GSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred CCeEEeeccCCCccc---ccHHHHHHHHHHHHHHHHH
Confidence 789999999766433 2566788888888888765
No 105
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.25 E-value=77 Score=27.17 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++.. | .-+..|+.++..+|..+...+.
T Consensus 409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999752 2 2457899999999999877765
No 106
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=28.26 E-value=77 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=29.0
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMP 154 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~ 154 (193)
.++|+.+||+++... -...|+.++..+|..+.+.+.+
T Consensus 466 ~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 466 VAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999985321 2568999999999999887763
No 107
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=27.23 E-value=56 Score=25.67 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=30.0
Q ss_pred cCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 112 QKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 112 ~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.++||.++| ++|+.|+|...+-|+-..+...+.+.-
T Consensus 175 ~~PrIaV~g-----LNPHaGe~G~~G~EE~~~I~PAI~~~~ 210 (298)
T PF04166_consen 175 ENPRIAVAG-----LNPHAGEGGLFGREEIEIIIPAIEEAR 210 (298)
T ss_dssp SS-EEEEE------SSGGGGTTTTTBSHHHHTHHHHHHHHH
T ss_pred CCCcEEEEE-----eCCCCCCCCCCcHhHHHHHHHHHHHHH
Confidence 468998887 999999999999999999998887653
No 108
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=27.10 E-value=71 Score=27.37 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=27.1
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++..- -..+..|+.++..+|..+.+.+.
T Consensus 273 ~p~IyAaGDv~~~~----~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 273 VPGVYAAGDLRPKE----LRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred CCCEEEceeccCCC----cchheeHHhhHHHHHHHHHHHHH
Confidence 47899999986321 12356799999999988876653
No 109
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=27.01 E-value=3.5e+02 Score=22.10 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=36.2
Q ss_pred cccCCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 110 RLQKGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 110 ~~~~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++.|+|++-.|-...++|-.++-...++.=|..+|+.+.....
T Consensus 198 Dl~~gNi~~~~~~~~~iD~e~~~~G~~~~Dlg~~ianL~l~~~~ 241 (370)
T TIGR01767 198 DLHSGSIFVSEHETKVIDPEFAFYGPIGFDIGQFIANLFLNALS 241 (370)
T ss_pred cCCcccEEEcCCCCEEEcCcccccCchHhhHHHHHHHHHHHHhC
Confidence 45678999988888899998777778888888889999888664
No 110
>PLN02676 polyamine oxidase
Probab=26.57 E-value=89 Score=26.33 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=26.5
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
|||.++|++.+...|- =|.-|++++...|+.+.+.+
T Consensus 438 gri~FAGe~ts~~~~g---~~eGA~~SG~RaA~~I~~~l 473 (487)
T PLN02676 438 GRVYFTGEHTSEKYNG---YVHGAYLAGIDTANDLLECI 473 (487)
T ss_pred CceEEecccccccccc---chHHHHHHHHHHHHHHHHHh
Confidence 7999999997654443 34558888888887776644
No 111
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=26.55 E-value=94 Score=27.78 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=28.2
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||+++. ..-+..|+.++..+|..|.+.+.
T Consensus 715 ~~gVfA~GD~~~g-----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 715 IPGIYAGGDIVRG-----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEEeCCccCC-----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999863 22467899999999999977653
No 112
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=26.20 E-value=1.1e+02 Score=23.11 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048694 138 IEDAVVLARCLARNT-MPQYEKIGEALDEYVKERRTRLLDWLLKLILLVHFR 188 (193)
Q Consensus 138 l~da~~La~~l~~~~-~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~ 188 (193)
+||-+.|-..+.+.. .-.....-+.|+.|++.|.+-+=.-...-...+-|+
T Consensus 91 vEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~Ls~LW~ 142 (277)
T KOG2316|consen 91 VEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVSLSYLWQ 142 (277)
T ss_pred HHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCceeehHHHh
Confidence 677777766665544 112334567899999999877655554443334344
No 113
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.11 E-value=1e+02 Score=27.02 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=27.8
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||++... .-+..|+.++..+|..+.+.+.
T Consensus 617 ~~gVfAaGD~~~g~-----~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 617 NPKIFAGGDAVRGA-----DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCEEEcCCcCCCC-----cHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999997531 2346899999999999977653
No 114
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=25.87 E-value=83 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=24.9
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|+.+||++.......+ -...|++.+..+|..|..
T Consensus 265 ~~~VyA~GD~a~~~~~~~~-~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 265 APDIYALGDCAEINGQVLP-FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCCEEEeeecEeECCceee-hHHHHHHHHHHHHHHhcC
Confidence 5799999999975432222 134477788888887754
No 115
>PLN03000 amine oxidase
Probab=25.85 E-value=65 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.|||+++|++.+...|- -+.-|++++...|..|.+.++
T Consensus 587 ~GRIfFAGEaTs~~~~G---TVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 587 DGRLFFAGEATTRRYPA---TMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred CCcEEEeehHHhCCCCe---eHHHHHHHHHHHHHHHHHHhh
Confidence 57999999998877763 455588888888877766554
No 116
>PLN02529 lysine-specific histone demethylase 1
Probab=25.56 E-value=62 Score=28.97 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhcc
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNT 152 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~ 152 (193)
.+|++++||+.+.-.|-+ +.-|++++...|+.|.+.+
T Consensus 562 ~grL~FAGEaTs~~~pgt---VeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 562 SGRLFFAGEATTRQYPAT---MHGAFLSGLREASRILHVA 598 (738)
T ss_pred CCCEEEEEHHHhCCCCeE---eHHHHHHHHHHHHHHHHHH
Confidence 589999999988776644 4457888888888777654
No 117
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=25.37 E-value=73 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=28.8
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhc
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARN 151 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~ 151 (193)
.+||.++| +||+.|+|...+-|+. .+.-.+.+.
T Consensus 177 ~PrIaV~g-----LNPHAGE~G~~G~EE~-iI~PAi~~~ 209 (307)
T PRK03946 177 FKKIGVLG-----LNPHAGDNGVIGGEEE-EIKKAIKKA 209 (307)
T ss_pred CCCEEEEe-----eCCCCCCCCCCCcchH-HHHHHHHHH
Confidence 47898777 9999999999999999 888888764
No 118
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=25.13 E-value=66 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=27.8
Q ss_pred CCcEEEecccCCCCCCCccc-----hhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQ-----GGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~-----G~~~al~da~~La~~l~~ 150 (193)
.++|+-+||++....+..+. =...|.+.|..+++.|..
T Consensus 274 ~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 274 IENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred CCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 47899999999875554432 235788888888887754
No 119
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=24.85 E-value=38 Score=21.83 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.4
Q ss_pred ccccccCCcEEEecccC
Q 048694 107 LLGRLQKGTVTVAGDSM 123 (193)
Q Consensus 107 ~~~~~~~~~v~LiGDAA 123 (193)
.+..+.+-+++||||..
T Consensus 58 i~~~fP~~kfiLIGDsg 74 (100)
T PF09949_consen 58 ILRDFPERKFILIGDSG 74 (100)
T ss_pred HHHHCCCCcEEEEeeCC
Confidence 33445577999999984
No 120
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=23.66 E-value=1.3e+02 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|..+||+++..+++ ...|+.++..+++.|..
T Consensus 310 ~p~IyA~GDv~~~~~~l----~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 310 VPYIYAVGDILEDKQEL----TPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CCCEEEEEEecCCCccc----hHHHHHHHHHHHHHHhc
Confidence 47899999998643332 45789999999988853
No 121
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=34 Score=27.35 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=11.7
Q ss_pred CEEecCCcchHHHh
Q 048694 1 ILIGCDGASSVVAD 14 (193)
Q Consensus 1 lvVgADG~~S~vR~ 14 (193)
+||+.||+||++-.
T Consensus 124 ivvaiDGiHSRLSe 137 (449)
T COG1973 124 IVVAIDGIHSRLSE 137 (449)
T ss_pred EEEEecchhhhhhc
Confidence 57899999999854
No 122
>PLN02487 zeta-carotene desaturase
Probab=23.49 E-value=1.8e+02 Score=25.16 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=29.7
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.|++|+||=-..--| .+|+-|++.+...|+.+.+
T Consensus 518 ~nl~LAGD~t~~~yP---at~EgAv~SG~~AA~~i~~ 551 (569)
T PLN02487 518 SNFFLAGSYTKQDYI---DSMEGATLSGRQAAAYICE 551 (569)
T ss_pred CCEEEeCcccccCCc---chHHHHHHHHHHHHHHHHH
Confidence 699999999887777 4999999999999998866
No 123
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=23.45 E-value=80 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.|||.++||+.+...| .-+.-|++++...|..|...++
T Consensus 643 ~GRL~FAGEaTs~~~~---GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 643 DGRVFFAGEATNKQYP---ATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred CCCEEEEEhhHhCCCC---eEhHHHHHHHHHHHHHHHHHHh
Confidence 5799999999876555 3455688888888887776554
No 124
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=22.27 E-value=3.6e+02 Score=21.42 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=32.4
Q ss_pred CcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 048694 114 GTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTMPQYEKIGEALDEYVKERR 171 (193)
Q Consensus 114 ~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~~~~~~~~~~l~~y~~~r~ 171 (193)
.++...+|+ +|.+|-|-+.++.-|...+-+--+-.. ....+-+-+.|+-+|.
T Consensus 90 ~el~~~~D~----P~GSGLGSSSa~vvaLl~a~~~~kg~~--~~~~~LA~eAy~IER~ 141 (333)
T COG2605 90 IELHTQSDA----PPGSGLGSSSAFVVALLNALHAWKGES--LGPYELAREAYEIERE 141 (333)
T ss_pred eEEEEecCC----CCCCCCCchHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 578888886 678999999999777655443322211 2223344566777663
No 125
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.17 E-value=91 Score=18.13 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=17.9
Q ss_pred CEEecCCcchHHHhhhCCCCCC
Q 048694 1 ILIGCDGASSVVADFLKLKPKK 22 (193)
Q Consensus 1 lvVgADG~~S~vR~~~g~~~~~ 22 (193)
+||-.|=.+|-|.+.+|...|+
T Consensus 33 ~viI~dPe~S~IAk~l~i~~pG 54 (61)
T PRK08351 33 LVIIIDVENSRIAKKLGAKVPG 54 (61)
T ss_pred EEEEeCCcHhHHHHHhCCCCCC
Confidence 4778888999999999886554
No 126
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.08 E-value=1.3e+02 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=29.3
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+.+||+++. ......|+.++..+|..+.+.+.
T Consensus 720 ~pgVFAaGDv~~G-----~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 720 LPGVFAGGDIVTG-----GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCEEEecCcCCC-----ccHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999852 23567899999999999988765
No 127
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=21.58 E-value=1.3e+02 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=29.2
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHhccC
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLARNTM 153 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~~~~ 153 (193)
.++|+-+||++.. +.-+..|+.++..+|..+...+.
T Consensus 592 ~pgVFAaGD~~~G-----~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 592 IKGVYSGGDAARG-----GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCEEEEEcCCCC-----hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999852 23478899999999999988664
No 128
>PRK06116 glutathione reductase; Validated
Probab=21.29 E-value=1.5e+02 Score=24.41 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=25.4
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|..+||++... | -...|+.+|..+++.|..
T Consensus 295 ~~~IyA~GD~~~~~-~----~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 295 VPGIYAVGDVTGRV-E----LTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCEEEEeecCCCc-C----cHHHHHHHHHHHHHHHhC
Confidence 47999999998642 2 246889999999988853
No 129
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.12 E-value=56 Score=19.41 Aligned_cols=8 Identities=50% Similarity=0.987 Sum_probs=5.3
Q ss_pred EEecCCcc
Q 048694 2 LIGCDGAS 9 (193)
Q Consensus 2 vVgADG~~ 9 (193)
|||+||.+
T Consensus 8 Vi~sdG~~ 15 (67)
T PF09939_consen 8 VIGSDGVH 15 (67)
T ss_pred EEeCCCCE
Confidence 56777765
No 130
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.09 E-value=1.5e+02 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCcEEEecccCCCCCCCccchhhhhHHHHHHHHHHHHh
Q 048694 113 KGTVTVAGDSMHVMAPFIGQGGSAGIEDAVVLARCLAR 150 (193)
Q Consensus 113 ~~~v~LiGDAAh~~~P~~g~G~~~al~da~~La~~l~~ 150 (193)
.++|..+||++.. | .-...|+.++..+++.|..
T Consensus 301 ~~~VyAiGD~~~~--~---~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 301 VPNIYAIGDIVGG--P---MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCEEEeeecCCC--c---chHHHHHHHHHHHHHHHcC
Confidence 4799999999863 2 2457888999999888854
Done!