BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048695
         (846 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
           (Fn31-Nl-Kin-Crd-Ig26)
 pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
           (Fn31-Nl-Kin-Crd-Ig26)
          Length = 573

 Score = 36.2 bits (82), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 18/99 (18%)

Query: 89  QFQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCLQQESSNHVNLTLHDALESHK 148
            F   FV T  +S K  VR++I+       +L H + +             LHDA E   
Sbjct: 184 NFAAKFVMTPHESDKETVRKEIQTM----SVLRHPTLV------------NLHDAFEDDN 227

Query: 149 QKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCV 187
           + ++  I + +  G LF K+ DE+N+   + A+ Y   V
Sbjct: 228 EMVM--IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQV 264


>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
           Protein Kinase And Immunoglobulin Domains
          Length = 491

 Score = 36.2 bits (82), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 18/98 (18%)

Query: 90  FQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCLQQESSNHVNLTLHDALESHKQ 149
           F   FV T  +S K  VR++I+       +L H + +             LHDA E   +
Sbjct: 79  FAAKFVMTPHESDKETVRKEIQTM----SVLRHPTLV------------NLHDAFEDDNE 122

Query: 150 KMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCV 187
            ++  I + +  G LF K+ DE+N+   + A+ Y   V
Sbjct: 123 MVM--IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQV 158


>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
 pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
          Length = 362

 Score = 35.4 bits (80), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 36/170 (21%)

Query: 446 VTCYAKPQNMFALLGGSRTSKVTLLQCLAE-RIPFTGSL-------------NGNVLLLC 491
           +    K     ALLG S + K TLL  +A    P +G +             + NV L+ 
Sbjct: 22  INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81

Query: 492 YVEKLDAHQTYSVSESIQFSAALR------VGKTVNAMRRHIHVELVLNQLGLLPYSNQL 545
               L  H T  V ++I F   LR      + K V  + + +H++ +LN+     Y  QL
Sbjct: 82  QNWALYPHMT--VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----YPWQL 134

Query: 546 VGSLHYHC---------PSILLLEEPLSGVDTIGTLTILNILSLCQIRSG 586
            G               P +LLL+EPLS +D +  L +   L   Q   G
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184


>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
           The Abc Transporter Complex Cbionq
          Length = 275

 Score = 32.7 bits (73), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLALILTKEG 612
           P +L+L+EP +G+D +G   I+ +L   Q   G   +  T     VP +   + + KEG
Sbjct: 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220


>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
 pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
          Length = 268

 Score = 31.2 bits (69), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 546 VGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLA 605
           + S+  H P IL+L+EPL G+D  G   +L I+   +       L +      +   D  
Sbjct: 151 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRV 210

Query: 606 LILTKEGHQAYFGPR 620
           ++L K G + + G R
Sbjct: 211 VVLEK-GKKVFDGTR 224


>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
           Transport System
 pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
           Transport System
          Length = 266

 Score = 31.2 bits (69), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 546 VGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLA 605
           + S+  H P IL+L+EPL G+D  G   +L I+   +       L +      +   D  
Sbjct: 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRV 208

Query: 606 LILTKEGHQAYFGPR 620
           ++L K G + + G R
Sbjct: 209 VVLEK-GKKVFDGTR 222


>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
           Complexed With Atp
 pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
           Complexed With Atp
          Length = 359

 Score = 31.2 bits (69), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 28/157 (17%)

Query: 438 ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAE-RIPFTG--SLNGNVLLL--CY 492
           ++TP+ + ++    P  +  ++G S   K TLL+CLA    P +G  SL+G  +      
Sbjct: 15  QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74

Query: 493 VEKLDAHQTYSVSESIQF---------SAALRVGKTVNAMRRHIHVELVLNQLGLLP--- 540
           +   +    Y V E + F         +  L  GK   A  R   +E +L   G+     
Sbjct: 75  LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ-RIEAMLELTGISELAG 133

Query: 541 -YSNQLVGSLHYHC---------PSILLLEEPLSGVD 567
            Y ++L G               P ++LL+EP S +D
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,550,532
Number of Sequences: 62578
Number of extensions: 1022007
Number of successful extensions: 1782
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 11
length of query: 846
length of database: 14,973,337
effective HSP length: 107
effective length of query: 739
effective length of database: 8,277,491
effective search space: 6117065849
effective search space used: 6117065849
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)