Query 048695
Match_columns 846
No_of_seqs 581 out of 3652
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 1E-134 3E-139 1203.2 53.3 768 1-844 364-1374(1391)
2 PLN03140 ABC transporter G fam 100.0 2E-117 4E-122 1123.9 67.3 796 1-845 440-1458(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 8E-114 2E-118 1095.0 66.5 793 1-844 313-1382(1394)
4 KOG0061 Transporter, ABC super 100.0 1.4E-66 3E-71 613.6 33.5 419 418-846 22-601 (613)
5 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-64 2.4E-69 603.1 37.2 400 438-846 36-606 (617)
6 PLN03211 ABC transporter G-25; 100.0 5.2E-64 1.1E-68 597.6 39.0 395 439-846 80-651 (659)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.6E-61 5.7E-66 614.3 43.4 399 438-845 72-686 (1394)
8 PLN03140 ABC transporter G fam 100.0 1.7E-59 3.6E-64 595.6 39.1 401 438-846 176-782 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 1.7E-54 3.7E-59 517.6 27.8 400 439-845 127-722 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 9.3E-44 2E-48 353.9 21.0 192 421-622 2-222 (240)
11 TIGR01257 rim_protein retinal- 100.0 2.8E-40 6E-45 421.8 42.2 425 161-632 693-1152(2272)
12 COG1125 OpuBA ABC-type proline 100.0 2.8E-42 6.1E-47 349.4 18.1 192 421-622 1-222 (309)
13 COG1120 FepC ABC-type cobalami 100.0 2.4E-41 5.2E-46 353.2 19.3 207 421-634 2-239 (258)
14 COG1135 AbcC ABC-type metal io 100.0 2.8E-41 6E-46 352.2 19.3 197 421-622 1-228 (339)
15 COG1127 Ttg2A ABC-type transpo 100.0 5.5E-41 1.2E-45 339.0 20.5 208 419-635 6-249 (263)
16 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.2E-40 9.2E-45 342.0 21.9 205 420-633 3-237 (254)
17 COG1131 CcmA ABC-type multidru 100.0 5.6E-40 1.2E-44 356.1 23.0 199 421-633 4-230 (293)
18 COG4555 NatA ABC-type Na+ tran 100.0 8.7E-41 1.9E-45 327.9 14.0 192 421-622 1-219 (245)
19 COG1116 TauB ABC-type nitrate/ 100.0 3.6E-40 7.8E-45 338.0 19.2 184 421-614 3-211 (248)
20 COG3839 MalK ABC-type sugar tr 100.0 5.6E-40 1.2E-44 355.3 19.2 192 421-622 3-220 (338)
21 COG3638 ABC-type phosphate/pho 100.0 7.3E-40 1.6E-44 330.1 18.2 208 420-633 2-246 (258)
22 COG3842 PotA ABC-type spermidi 100.0 4.3E-40 9.3E-45 358.1 17.5 194 420-622 4-223 (352)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-39 2.3E-44 339.5 17.3 195 420-622 1-224 (345)
24 PRK13537 nodulation ABC transp 100.0 2.6E-38 5.7E-43 345.9 23.8 193 417-620 3-222 (306)
25 COG4152 ABC-type uncharacteriz 100.0 5.1E-39 1.1E-43 323.8 16.5 198 421-633 2-223 (300)
26 TIGR01257 rim_protein retinal- 100.0 2.2E-37 4.7E-42 395.4 33.9 428 131-633 1688-2163(2272)
27 COG1136 SalX ABC-type antimicr 100.0 3.8E-38 8.3E-43 323.0 20.9 187 421-614 1-220 (226)
28 COG2884 FtsE Predicted ATPase 100.0 2.7E-38 5.9E-43 308.0 18.3 190 421-620 1-221 (223)
29 PRK11650 ugpC glycerol-3-phosp 100.0 2E-37 4.2E-42 344.9 23.4 192 421-622 3-221 (356)
30 TIGR03265 PhnT2 putative 2-ami 100.0 2.2E-37 4.7E-42 344.2 23.4 192 421-622 4-221 (353)
31 PRK13536 nodulation factor exp 100.0 3.3E-37 7.1E-42 341.1 24.2 191 419-620 39-256 (340)
32 PRK11432 fbpC ferric transport 100.0 3.3E-37 7.2E-42 342.2 23.5 192 421-622 6-223 (351)
33 TIGR02314 ABC_MetN D-methionin 100.0 3.3E-37 7.1E-42 340.7 22.9 196 421-622 1-227 (343)
34 COG1122 CbiO ABC-type cobalt t 100.0 5.6E-37 1.2E-41 320.1 22.8 192 420-620 2-223 (235)
35 PRK09452 potA putrescine/sperm 100.0 7.6E-37 1.6E-41 341.6 23.7 194 419-622 12-231 (375)
36 TIGR03258 PhnT 2-aminoethylpho 100.0 9.7E-37 2.1E-41 339.5 23.4 192 421-622 5-225 (362)
37 PRK11607 potG putrescine trans 100.0 1.3E-36 2.9E-41 340.2 24.4 195 418-622 16-236 (377)
38 PRK10851 sulfate/thiosulfate t 100.0 1.3E-36 2.7E-41 338.1 23.5 195 421-622 2-223 (353)
39 COG0411 LivG ABC-type branched 100.0 4.8E-37 1E-41 312.4 17.0 196 420-622 3-236 (250)
40 cd03265 ABC_DrrA DrrA is the A 100.0 2.1E-36 4.5E-41 316.1 21.2 189 422-620 1-216 (220)
41 cd03261 ABC_Org_Solvent_Resist 100.0 2.5E-36 5.3E-41 318.7 22.0 190 422-620 1-221 (235)
42 TIGR01288 nodI ATP-binding ABC 100.0 3.3E-36 7.1E-41 329.5 23.5 190 420-620 3-219 (303)
43 COG1124 DppF ABC-type dipeptid 100.0 1.5E-36 3.3E-41 308.5 19.2 195 420-622 2-228 (252)
44 cd03259 ABC_Carb_Solutes_like 100.0 2.4E-36 5.1E-41 314.1 21.0 187 422-618 1-213 (213)
45 TIGR03522 GldA_ABC_ATP gliding 100.0 3.6E-36 7.9E-41 328.7 23.1 188 421-620 2-216 (301)
46 COG4559 ABC-type hemin transpo 100.0 1.2E-36 2.5E-41 301.1 17.1 214 421-643 1-250 (259)
47 cd03301 ABC_MalK_N The N-termi 100.0 4.2E-36 9.2E-41 312.1 21.8 187 422-618 1-213 (213)
48 PRK11000 maltose/maltodextrin 100.0 4.3E-36 9.3E-41 336.2 23.4 192 421-622 3-220 (369)
49 cd03296 ABC_CysA_sulfate_impor 100.0 6.1E-36 1.3E-40 316.5 22.6 193 421-620 2-221 (239)
50 cd03218 ABC_YhbG The ABC trans 100.0 4.6E-36 1E-40 315.9 21.4 189 422-621 1-218 (232)
51 TIGR00960 3a0501s02 Type II (G 100.0 4.3E-36 9.2E-41 312.8 20.6 185 421-614 1-216 (216)
52 cd03293 ABC_NrtD_SsuB_transpor 100.0 8E-36 1.7E-40 311.6 22.2 194 422-620 1-218 (220)
53 COG1117 PstB ABC-type phosphat 100.0 1.7E-36 3.7E-41 300.6 16.0 190 420-621 6-233 (253)
54 cd03266 ABC_NatA_sodium_export 100.0 6.2E-36 1.3E-40 311.9 21.2 191 421-618 1-218 (218)
55 PRK11153 metN DL-methionine tr 100.0 9.3E-36 2E-40 330.7 23.5 196 421-622 1-227 (343)
56 PRK13637 cbiO cobalt transport 100.0 1.7E-35 3.6E-40 321.4 24.4 196 421-621 2-230 (287)
57 cd03269 ABC_putative_ATPase Th 100.0 9.7E-36 2.1E-40 308.8 21.3 186 422-618 1-210 (210)
58 COG0410 LivF ABC-type branched 100.0 3.9E-36 8.5E-41 303.5 17.7 192 420-622 2-223 (237)
59 PRK09536 btuD corrinoid ABC tr 100.0 7.6E-36 1.7E-40 335.4 21.7 205 421-633 3-238 (402)
60 COG1137 YhbG ABC-type (unclass 100.0 1E-36 2.2E-41 299.0 12.6 203 421-632 4-237 (243)
61 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-35 3E-40 312.5 22.3 194 421-620 1-225 (233)
62 TIGR01188 drrA daunorubicin re 100.0 9.6E-36 2.1E-40 325.6 21.3 177 439-620 5-208 (302)
63 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-35 3.1E-40 313.0 21.5 191 422-620 1-227 (236)
64 COG3840 ThiQ ABC-type thiamine 100.0 3E-36 6.5E-41 291.3 14.2 188 422-621 2-215 (231)
65 PRK11248 tauB taurine transpor 100.0 2.5E-35 5.4E-40 314.7 22.8 191 421-620 1-215 (255)
66 PRK13634 cbiO cobalt transport 100.0 2.3E-35 5E-40 320.7 22.9 196 421-621 2-231 (290)
67 COG4175 ProV ABC-type proline/ 100.0 5.9E-36 1.3E-40 311.5 17.3 198 420-622 3-251 (386)
68 cd03263 ABC_subfamily_A The AB 100.0 1.5E-35 3.2E-40 309.6 20.4 189 422-620 1-216 (220)
69 PRK13643 cbiO cobalt transport 100.0 2.1E-35 4.6E-40 320.7 22.0 195 421-621 1-229 (288)
70 PRK11629 lolD lipoprotein tran 100.0 4.7E-35 1E-39 308.6 23.6 193 421-620 5-229 (233)
71 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-35 4.2E-40 308.2 20.3 186 422-614 1-218 (218)
72 PRK13646 cbiO cobalt transport 100.0 4.1E-35 8.9E-40 318.2 23.2 196 421-621 2-231 (286)
73 cd03256 ABC_PhnC_transporter A 100.0 2.1E-35 4.6E-40 312.6 20.3 194 422-621 1-230 (241)
74 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4E-35 8.7E-40 309.7 21.9 190 421-621 1-217 (236)
75 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.6E-35 1E-39 310.4 22.3 189 422-620 1-220 (242)
76 PRK09493 glnQ glutamine ABC tr 100.0 5E-35 1.1E-39 309.7 22.3 191 421-621 1-221 (240)
77 TIGR01186 proV glycine betaine 100.0 3.7E-35 8E-40 326.1 22.3 180 439-622 5-216 (363)
78 PRK13647 cbiO cobalt transport 100.0 4.4E-35 9.5E-40 316.1 22.2 191 421-621 4-223 (274)
79 PRK13651 cobalt transporter AT 100.0 4.5E-35 9.8E-40 320.0 22.5 196 421-622 2-251 (305)
80 cd03268 ABC_BcrA_bacitracin_re 100.0 2.6E-35 5.5E-40 305.1 19.2 182 422-618 1-208 (208)
81 PRK11831 putative ABC transpor 100.0 7.9E-35 1.7E-39 313.4 23.7 193 421-622 7-230 (269)
82 PRK10895 lipopolysaccharide AB 100.0 4.1E-35 8.8E-40 310.6 21.1 191 421-621 3-222 (241)
83 PRK13636 cbiO cobalt transport 100.0 7E-35 1.5E-39 315.9 23.2 194 419-621 3-227 (283)
84 PRK10070 glycine betaine trans 100.0 6.5E-35 1.4E-39 327.7 23.7 197 421-622 4-251 (400)
85 TIGR02315 ABC_phnC phosphonate 100.0 3.6E-35 7.9E-40 311.3 20.2 196 421-622 1-232 (243)
86 TIGR02673 FtsE cell division A 100.0 4.5E-35 9.7E-40 304.6 20.5 183 421-613 1-214 (214)
87 PRK13650 cbiO cobalt transport 100.0 6.4E-35 1.4E-39 315.6 22.5 193 421-621 4-225 (279)
88 PRK13641 cbiO cobalt transport 100.0 1E-34 2.2E-39 315.3 23.7 195 421-621 2-230 (287)
89 PRK15079 oligopeptide ABC tran 100.0 1.1E-34 2.5E-39 319.9 24.2 200 420-622 7-248 (331)
90 cd03260 ABC_PstB_phosphate_tra 100.0 6.5E-35 1.4E-39 306.2 21.2 188 422-621 1-225 (227)
91 PRK10908 cell division protein 100.0 7.6E-35 1.6E-39 304.7 21.5 185 421-615 1-216 (222)
92 cd03264 ABC_drug_resistance_li 100.0 6.9E-35 1.5E-39 302.6 20.4 184 422-618 1-211 (211)
93 cd03224 ABC_TM1139_LivF_branch 100.0 6.4E-35 1.4E-39 305.1 20.2 186 422-620 1-216 (222)
94 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-34 2.4E-39 307.5 22.2 192 421-621 2-227 (242)
95 TIGR03415 ABC_choXWV_ATP choli 100.0 9.5E-35 2E-39 324.2 22.7 180 439-622 36-251 (382)
96 PRK11300 livG leucine/isoleuci 100.0 1E-34 2.2E-39 310.1 22.0 195 421-622 5-240 (255)
97 cd03292 ABC_FtsE_transporter F 100.0 7.3E-35 1.6E-39 302.9 20.2 183 422-614 1-214 (214)
98 PRK13635 cbiO cobalt transport 100.0 1.2E-34 2.6E-39 313.4 22.3 193 420-621 4-225 (279)
99 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-34 2.5E-39 309.5 21.9 186 420-621 11-219 (257)
100 PRK11264 putative amino-acid A 100.0 1.8E-34 3.8E-39 307.4 23.1 190 421-620 3-228 (250)
101 PRK11231 fecE iron-dicitrate t 100.0 1.2E-34 2.6E-39 309.7 21.4 203 421-631 2-235 (255)
102 PRK11614 livF leucine/isoleuci 100.0 9.4E-35 2E-39 307.1 20.3 188 421-621 5-222 (237)
103 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-34 2.2E-39 301.7 20.0 183 422-614 1-213 (213)
104 cd03226 ABC_cobalt_CbiO_domain 100.0 6.9E-35 1.5E-39 301.3 18.7 178 423-615 1-205 (205)
105 PRK13548 hmuV hemin importer A 100.0 1.1E-34 2.4E-39 310.3 20.8 192 421-622 2-227 (258)
106 TIGR03740 galliderm_ABC gallid 100.0 1.2E-34 2.6E-39 303.5 20.5 196 422-633 1-220 (223)
107 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-34 2.7E-39 311.8 20.9 189 423-621 26-246 (269)
108 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-34 3.9E-39 301.5 21.5 187 422-615 2-220 (221)
109 PRK10575 iron-hydroxamate tran 100.0 1.6E-34 3.5E-39 310.4 21.6 196 420-622 10-234 (265)
110 PRK13644 cbiO cobalt transport 100.0 1.2E-34 2.5E-39 312.8 20.5 190 421-621 1-220 (274)
111 PRK13638 cbiO cobalt transport 100.0 1.6E-34 3.5E-39 311.3 21.4 190 421-621 1-221 (271)
112 PRK13631 cbiO cobalt transport 100.0 3.6E-34 7.9E-39 314.7 24.3 196 420-621 20-261 (320)
113 PRK11124 artP arginine transpo 100.0 2.5E-34 5.3E-39 304.8 22.1 190 421-621 2-226 (242)
114 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-34 2.8E-39 300.5 19.3 182 423-613 1-211 (211)
115 PRK13652 cbiO cobalt transport 100.0 3.3E-34 7.1E-39 309.8 23.1 192 421-621 3-223 (277)
116 PRK10584 putative ABC transpor 100.0 3.6E-34 7.9E-39 300.8 22.8 190 420-616 5-226 (228)
117 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-34 3.1E-39 304.2 19.7 188 422-622 1-218 (230)
118 PRK13633 cobalt transporter AT 100.0 3E-34 6.4E-39 310.7 22.6 196 420-621 3-229 (280)
119 PRK11308 dppF dipeptide transp 100.0 4.7E-34 1E-38 314.7 24.3 199 420-622 4-241 (327)
120 COG4525 TauB ABC-type taurine 100.0 2.2E-34 4.7E-39 281.1 18.8 194 421-621 3-220 (259)
121 PRK13639 cbiO cobalt transport 100.0 2.5E-34 5.4E-39 310.4 21.4 191 421-621 1-222 (275)
122 PRK10253 iron-enterobactin tra 100.0 2.7E-34 5.9E-39 308.6 21.5 196 420-622 6-230 (265)
123 PRK14268 phosphate ABC transpo 100.0 5.1E-34 1.1E-38 305.3 23.2 191 419-621 10-238 (258)
124 PRK13649 cbiO cobalt transport 100.0 3.5E-34 7.5E-39 310.3 22.2 195 421-621 2-230 (280)
125 COG1129 MglA ABC-type sugar tr 100.0 5.6E-34 1.2E-38 320.3 24.5 207 419-633 6-244 (500)
126 PRK10619 histidine/lysine/argi 100.0 4.1E-34 8.8E-39 305.9 22.4 190 421-621 5-237 (257)
127 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.5E-34 5.3E-39 298.5 20.1 185 422-618 1-211 (211)
128 PRK09984 phosphonate/organopho 100.0 3.7E-34 8E-39 307.1 22.0 208 420-634 3-252 (262)
129 TIGR00972 3a0107s01c2 phosphat 100.0 5E-34 1.1E-38 303.4 22.8 189 421-620 1-227 (247)
130 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-34 2.8E-39 345.3 20.4 297 1-337 269-611 (617)
131 cd03257 ABC_NikE_OppD_transpor 100.0 5.4E-34 1.2E-38 299.2 21.8 193 421-618 1-228 (228)
132 PRK10771 thiQ thiamine transpo 100.0 3.6E-34 7.9E-39 301.6 20.5 189 421-621 1-215 (232)
133 cd03235 ABC_Metallic_Cations A 100.0 2.5E-34 5.3E-39 298.9 18.9 186 424-618 2-213 (213)
134 cd03267 ABC_NatA_like Similar 100.0 4.6E-34 1E-38 301.6 20.9 176 439-618 33-236 (236)
135 TIGR03873 F420-0_ABC_ATP propo 100.0 4.7E-34 1E-38 305.3 21.2 193 422-622 2-223 (256)
136 PRK11022 dppD dipeptide transp 100.0 7.9E-34 1.7E-38 313.0 23.4 197 421-622 3-240 (326)
137 PRK13648 cbiO cobalt transport 100.0 7.9E-34 1.7E-38 305.7 22.7 195 419-622 5-228 (269)
138 PRK13640 cbiO cobalt transport 100.0 7E-34 1.5E-38 308.0 22.1 193 420-621 4-228 (282)
139 PRK14242 phosphate transporter 100.0 9.9E-34 2.2E-38 302.2 22.9 191 419-620 4-232 (253)
140 PRK13632 cbiO cobalt transport 100.0 8.9E-34 1.9E-38 305.6 22.6 192 420-621 6-227 (271)
141 TIGR02769 nickel_nikE nickel i 100.0 7.8E-34 1.7E-38 305.1 22.1 198 421-622 2-237 (265)
142 cd03234 ABCG_White The White s 100.0 7.5E-34 1.6E-38 298.0 21.4 194 421-618 3-226 (226)
143 PRK13547 hmuV hemin importer A 100.0 4.8E-34 1E-38 307.2 20.3 195 421-622 1-241 (272)
144 PRK13642 cbiO cobalt transport 100.0 7.8E-34 1.7E-38 306.9 22.0 194 420-621 3-225 (277)
145 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-33 2.6E-38 301.4 23.0 190 422-620 1-231 (252)
146 COG0444 DppD ABC-type dipeptid 100.0 7.6E-34 1.7E-38 300.9 21.1 196 422-622 2-240 (316)
147 PRK14247 phosphate ABC transpo 100.0 1.1E-33 2.5E-38 301.2 22.7 191 421-621 3-230 (250)
148 PRK14273 phosphate ABC transpo 100.0 1.3E-33 2.9E-38 301.4 23.0 190 420-620 6-233 (254)
149 TIGR01978 sufC FeS assembly AT 100.0 9.1E-34 2E-38 300.5 21.4 191 422-620 1-229 (243)
150 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-33 2.4E-38 298.9 21.9 189 422-620 1-215 (237)
151 PRK15112 antimicrobial peptide 100.0 1.5E-33 3.2E-38 303.3 23.1 197 421-621 4-235 (267)
152 PRK09473 oppD oligopeptide tra 100.0 1.8E-33 3.8E-38 310.6 24.1 198 420-622 11-248 (330)
153 PRK13549 xylose transporter AT 100.0 8E-34 1.7E-38 332.0 22.7 195 420-622 4-229 (506)
154 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-33 2.8E-38 297.5 22.0 189 422-620 1-215 (232)
155 COG4604 CeuD ABC-type enteroch 100.0 6.4E-35 1.4E-39 285.4 11.1 205 421-633 1-235 (252)
156 PRK14250 phosphate ABC transpo 100.0 8.4E-34 1.8E-38 300.6 20.6 187 421-621 3-217 (241)
157 PRK10744 pstB phosphate transp 100.0 1.4E-33 3E-38 302.3 22.6 194 417-621 9-240 (260)
158 PRK13645 cbiO cobalt transport 100.0 1.8E-33 3.9E-38 306.0 23.2 196 421-621 6-236 (289)
159 PRK14237 phosphate transporter 100.0 2.2E-33 4.8E-38 301.8 23.2 196 415-621 14-247 (267)
160 PRK10762 D-ribose transporter 100.0 1.1E-33 2.4E-38 330.5 22.5 194 421-622 4-227 (501)
161 PRK14267 phosphate ABC transpo 100.0 2.3E-33 4.9E-38 299.4 23.0 191 421-621 4-233 (253)
162 TIGR01277 thiQ thiamine ABC tr 100.0 1.8E-33 3.8E-38 292.6 21.5 186 422-619 1-212 (213)
163 cd03299 ABC_ModC_like Archeal 100.0 2.5E-33 5.5E-38 295.8 22.8 189 422-621 1-215 (235)
164 PRK14270 phosphate ABC transpo 100.0 2.3E-33 4.9E-38 299.1 22.3 190 420-621 3-231 (251)
165 PRK14269 phosphate ABC transpo 100.0 2.3E-33 4.9E-38 298.2 21.8 191 421-621 2-226 (246)
166 PRK09700 D-allose transporter 100.0 1.4E-33 3.1E-38 330.3 22.1 195 420-622 4-231 (510)
167 COG3845 ABC-type uncharacteriz 100.0 3.9E-33 8.5E-38 307.1 23.8 229 420-656 3-263 (501)
168 PRK15093 antimicrobial peptide 100.0 3E-33 6.5E-38 309.3 23.1 199 421-622 3-245 (330)
169 PRK14256 phosphate ABC transpo 100.0 4.4E-33 9.6E-38 297.0 23.2 190 421-621 4-232 (252)
170 PRK14274 phosphate ABC transpo 100.0 4.1E-33 8.9E-38 298.5 22.7 191 420-621 11-239 (259)
171 PRK14235 phosphate transporter 100.0 4.4E-33 9.5E-38 299.5 22.8 191 420-620 18-246 (267)
172 KOG0059 Lipid exporter ABCA1 a 100.0 5.5E-33 1.2E-37 341.7 26.3 410 158-633 335-791 (885)
173 PRK14239 phosphate transporter 100.0 7.1E-33 1.5E-37 295.4 22.9 190 421-621 5-232 (252)
174 PRK14241 phosphate transporter 100.0 6.8E-33 1.5E-37 296.6 22.7 191 421-621 4-238 (258)
175 PRK11701 phnK phosphonate C-P 100.0 7.5E-33 1.6E-37 296.3 23.0 192 421-621 6-237 (258)
176 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-33 6.8E-38 327.1 21.9 188 420-622 10-226 (510)
177 PRK14245 phosphate ABC transpo 100.0 7E-33 1.5E-37 295.1 22.7 191 420-621 2-230 (250)
178 PRK11144 modC molybdate transp 100.0 3.7E-33 8E-38 311.0 21.4 183 421-622 1-215 (352)
179 PRK14248 phosphate ABC transpo 100.0 7.6E-33 1.7E-37 297.9 22.9 191 420-621 20-248 (268)
180 TIGR02142 modC_ABC molybdenum 100.0 4.6E-33 1E-37 310.6 21.7 182 426-621 4-217 (354)
181 PRK10247 putative ABC transpor 100.0 3.4E-33 7.3E-38 292.9 19.3 189 419-619 5-221 (225)
182 PRK14259 phosphate ABC transpo 100.0 6.3E-33 1.4E-37 298.6 21.7 189 420-621 12-249 (269)
183 COG4598 HisP ABC-type histidin 100.0 7.9E-34 1.7E-38 273.4 12.7 192 421-622 6-238 (256)
184 PLN03211 ABC transporter G-25; 100.0 4.2E-33 9.2E-38 332.6 21.9 230 92-339 382-658 (659)
185 PRK10418 nikD nickel transport 100.0 1.5E-32 3.3E-37 293.3 23.9 190 419-621 2-226 (254)
186 cd03297 ABC_ModC_molybdenum_tr 100.0 7.3E-33 1.6E-37 288.1 20.9 181 422-618 2-214 (214)
187 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.3E-33 9.3E-38 291.9 19.0 186 422-618 23-224 (224)
188 TIGR01184 ntrCD nitrate transp 100.0 5.2E-33 1.1E-37 292.4 19.7 176 443-620 1-199 (230)
189 PRK14240 phosphate transporter 100.0 1.3E-32 2.8E-37 293.1 22.5 189 421-620 3-229 (250)
190 PRK14262 phosphate ABC transpo 100.0 1.7E-32 3.6E-37 292.2 23.0 189 421-620 3-229 (250)
191 TIGR03608 L_ocin_972_ABC putat 100.0 6.1E-33 1.3E-37 286.8 18.9 174 424-608 1-206 (206)
192 PRK10419 nikE nickel transport 100.0 1.9E-32 4.1E-37 294.7 23.3 198 421-622 3-238 (268)
193 PRK14251 phosphate ABC transpo 100.0 1.8E-32 3.9E-37 292.2 22.5 189 421-620 4-230 (251)
194 PRK14249 phosphate ABC transpo 100.0 1.9E-32 4.2E-37 291.9 22.7 189 421-621 4-231 (251)
195 PRK14236 phosphate transporter 100.0 1.7E-32 3.6E-37 295.8 22.4 193 418-621 22-252 (272)
196 TIGR02982 heterocyst_DevA ABC 100.0 1.4E-32 2.9E-37 287.4 20.9 187 422-614 2-219 (220)
197 PRK14261 phosphate ABC transpo 100.0 2E-32 4.3E-37 292.2 22.6 191 420-621 5-233 (253)
198 PRK03695 vitamin B12-transport 100.0 6.7E-33 1.5E-37 294.9 18.9 184 423-622 2-219 (248)
199 PRK14272 phosphate ABC transpo 100.0 2.6E-32 5.6E-37 291.1 23.2 191 420-621 3-232 (252)
200 PRK13546 teichoic acids export 100.0 3.2E-32 6.9E-37 291.7 23.5 207 420-633 3-240 (264)
201 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-32 3.7E-37 282.8 20.6 169 421-618 3-202 (202)
202 PRK11288 araG L-arabinose tran 100.0 1.5E-32 3.2E-37 321.0 22.6 192 421-620 4-224 (501)
203 PRK14244 phosphate ABC transpo 100.0 2.5E-32 5.4E-37 291.1 22.3 189 422-620 6-232 (251)
204 PRK14258 phosphate ABC transpo 100.0 3.7E-32 8E-37 291.4 23.6 191 421-621 7-241 (261)
205 PRK14254 phosphate ABC transpo 100.0 3.5E-32 7.5E-37 295.0 23.4 189 419-620 37-264 (285)
206 PRK09544 znuC high-affinity zi 100.0 1.5E-32 3.2E-37 292.5 20.1 185 420-622 3-206 (251)
207 PRK14275 phosphate ABC transpo 100.0 2.9E-32 6.3E-37 295.9 22.8 190 420-621 38-266 (286)
208 PRK14255 phosphate ABC transpo 100.0 3.1E-32 6.6E-37 290.5 22.6 190 420-620 4-231 (252)
209 PRK14253 phosphate ABC transpo 100.0 2.9E-32 6.3E-37 290.2 22.3 189 421-620 3-228 (249)
210 PRK14271 phosphate ABC transpo 100.0 5.1E-32 1.1E-36 292.5 24.4 191 420-621 20-247 (276)
211 COG1123 ATPase components of v 100.0 3.1E-32 6.8E-37 308.1 23.6 197 421-622 5-241 (539)
212 TIGR02323 CP_lyasePhnK phospho 100.0 4E-32 8.6E-37 289.9 23.1 191 421-620 3-233 (253)
213 CHL00131 ycf16 sulfate ABC tra 100.0 4.7E-32 1E-36 289.1 23.5 193 421-621 7-237 (252)
214 PRK14238 phosphate transporter 100.0 2.2E-32 4.8E-37 294.6 21.1 191 420-621 23-251 (271)
215 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-32 4.2E-37 320.1 22.2 194 421-622 1-227 (500)
216 PRK13543 cytochrome c biogenes 100.0 2.5E-32 5.4E-37 284.2 20.3 177 420-609 10-211 (214)
217 PRK14260 phosphate ABC transpo 100.0 2.8E-32 6E-37 292.1 21.0 191 421-621 7-239 (259)
218 PRK10261 glutathione transport 100.0 3.7E-32 8E-37 324.6 24.2 199 420-622 312-550 (623)
219 PRK14246 phosphate ABC transpo 100.0 4.7E-32 1E-36 289.8 22.4 190 421-621 10-237 (257)
220 PRK15134 microcin C ABC transp 100.0 1.9E-32 4.2E-37 322.1 21.3 198 420-620 274-510 (529)
221 PRK15056 manganese/iron transp 100.0 3.6E-32 7.7E-37 293.3 21.6 195 420-622 5-227 (272)
222 cd03252 ABCC_Hemolysin The ABC 100.0 1E-32 2.2E-37 291.5 16.9 186 422-620 1-220 (237)
223 PRK10261 glutathione transport 100.0 2.3E-32 5.1E-37 326.3 22.0 197 421-622 12-255 (623)
224 TIGR03269 met_CoM_red_A2 methy 100.0 3.5E-32 7.5E-37 319.4 23.0 190 422-621 1-254 (520)
225 PRK10982 galactose/methyl gala 100.0 2E-32 4.3E-37 319.2 20.6 190 425-622 2-220 (491)
226 PRK13538 cytochrome c biogenes 100.0 2.1E-32 4.6E-37 282.6 18.1 176 421-609 1-203 (204)
227 COG1123 ATPase components of v 100.0 4.7E-32 1E-36 306.7 22.4 199 418-620 277-514 (539)
228 COG4181 Predicted ABC-type tra 100.0 1.9E-32 4.1E-37 262.3 16.2 189 421-616 6-226 (228)
229 TIGR02324 CP_lyasePhnL phospho 100.0 5.2E-32 1.1E-36 283.7 21.1 184 421-609 1-223 (224)
230 TIGR02770 nickel_nikD nickel i 100.0 5.2E-32 1.1E-36 284.9 21.0 175 442-620 1-210 (230)
231 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-32 1.5E-36 316.8 24.2 195 420-620 278-512 (520)
232 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-32 3.5E-37 289.4 16.6 186 422-620 1-220 (234)
233 PRK14265 phosphate ABC transpo 100.0 1E-31 2.2E-36 290.0 23.1 193 417-621 16-254 (274)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.5E-32 3.2E-37 290.4 16.2 187 422-620 1-221 (238)
235 PRK13549 xylose transporter AT 100.0 8.6E-32 1.9E-36 314.9 22.8 199 420-623 258-492 (506)
236 PRK15134 microcin C ABC transp 100.0 9.6E-32 2.1E-36 316.2 22.9 196 421-621 5-242 (529)
237 PRK14266 phosphate ABC transpo 100.0 1.4E-31 3.1E-36 285.1 21.9 191 420-621 2-230 (250)
238 cd03231 ABC_CcmA_heme_exporter 100.0 5.8E-32 1.3E-36 278.7 18.0 172 422-609 1-199 (201)
239 PRK14243 phosphate transporter 100.0 1.5E-31 3.2E-36 287.3 21.8 188 421-620 10-243 (264)
240 PRK14264 phosphate ABC transpo 100.0 3.3E-31 7.2E-36 290.1 24.9 194 419-621 43-285 (305)
241 COG4161 ArtP ABC-type arginine 100.0 6.5E-32 1.4E-36 255.9 16.5 191 421-621 2-226 (242)
242 PRK14252 phosphate ABC transpo 100.0 2.5E-31 5.4E-36 285.7 23.2 191 419-621 14-245 (265)
243 PRK09580 sufC cysteine desulfu 100.0 2.2E-31 4.8E-36 283.2 22.3 192 421-620 1-230 (248)
244 PRK14263 phosphate ABC transpo 100.0 3E-31 6.6E-36 284.2 23.0 191 419-621 6-241 (261)
245 cd03245 ABCC_bacteriocin_expor 100.0 6E-32 1.3E-36 282.3 16.9 180 422-618 3-220 (220)
246 cd03289 ABCC_CFTR2 The CFTR su 100.0 9.2E-32 2E-36 289.4 18.3 183 422-622 3-222 (275)
247 PRK13539 cytochrome c biogenes 100.0 9.8E-32 2.1E-36 278.2 17.8 173 421-609 2-199 (207)
248 PRK14257 phosphate ABC transpo 100.0 3.7E-31 8.1E-36 291.8 23.1 192 420-621 79-309 (329)
249 cd03248 ABCC_TAP TAP, the Tran 100.0 6.3E-32 1.4E-36 283.4 15.9 188 420-614 10-226 (226)
250 PRK13545 tagH teichoic acids e 100.0 3.2E-31 6.9E-36 301.1 22.8 193 421-622 21-229 (549)
251 cd03254 ABCC_Glucan_exporter_l 100.0 7.9E-32 1.7E-36 283.2 16.5 186 421-620 2-221 (229)
252 COG4619 ABC-type uncharacteriz 100.0 9.4E-33 2E-37 263.6 7.8 182 421-614 3-212 (223)
253 PRK09700 D-allose transporter 100.0 2.3E-31 5E-36 311.7 21.1 191 420-620 264-493 (510)
254 cd03253 ABCC_ATM1_transporter 100.0 1.2E-31 2.6E-36 283.1 16.6 185 422-620 1-219 (236)
255 cd03244 ABCC_MRP_domain2 Domai 100.0 2.3E-31 4.9E-36 278.2 17.7 180 422-619 3-220 (221)
256 TIGR02633 xylG D-xylose ABC tr 100.0 3.5E-31 7.5E-36 309.6 20.8 198 420-622 256-489 (500)
257 COG4674 Uncharacterized ABC-ty 100.0 1E-31 2.3E-36 262.5 13.6 194 420-622 4-232 (249)
258 cd03232 ABC_PDR_domain2 The pl 100.0 5.9E-31 1.3E-35 269.2 19.9 175 421-618 3-192 (192)
259 PRK10938 putative molybdenum t 100.0 1.5E-31 3.2E-36 311.9 17.4 183 421-622 3-221 (490)
260 COG4586 ABC-type uncharacteriz 100.0 1.6E-31 3.4E-36 273.8 14.3 186 440-633 37-250 (325)
261 cd03213 ABCG_EPDR ABCG transpo 100.0 8.5E-31 1.8E-35 268.5 19.8 176 421-618 3-194 (194)
262 PRK11288 araG L-arabinose tran 100.0 6.6E-31 1.4E-35 307.1 20.7 191 420-622 256-482 (501)
263 TIGR01189 ccmA heme ABC export 100.0 4.7E-31 1E-35 271.3 16.9 170 422-607 1-197 (198)
264 TIGR01166 cbiO cobalt transpor 100.0 5.9E-31 1.3E-35 268.7 16.9 155 439-597 4-189 (190)
265 PRK10762 D-ribose transporter 100.0 1.2E-30 2.5E-35 305.1 21.3 191 420-623 256-482 (501)
266 PRK13540 cytochrome c biogenes 100.0 8.1E-31 1.7E-35 269.9 17.3 170 421-606 1-197 (200)
267 cd03230 ABC_DR_subfamily_A Thi 100.0 1E-30 2.3E-35 262.9 17.3 158 422-614 1-173 (173)
268 COG4148 ModC ABC-type molybdat 100.0 1.6E-31 3.4E-36 274.1 11.5 168 445-622 16-215 (352)
269 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-30 3.8E-35 303.9 21.8 191 419-622 266-489 (510)
270 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.2E-30 4.7E-35 268.1 19.0 175 421-620 6-207 (207)
271 COG4988 CydD ABC-type transpor 100.0 1.3E-30 2.8E-35 293.8 18.3 186 419-622 318-540 (559)
272 COG1101 PhnK ABC-type uncharac 100.0 1.6E-30 3.5E-35 258.1 15.9 213 421-635 1-252 (263)
273 cd03250 ABCC_MRP_domain1 Domai 100.0 1.1E-30 2.5E-35 269.6 15.5 181 422-613 1-204 (204)
274 COG1134 TagH ABC-type polysacc 100.0 6.2E-30 1.3E-34 260.9 20.3 188 438-634 38-241 (249)
275 PRK15064 ABC transporter ATP-b 100.0 4E-30 8.8E-35 302.5 21.9 190 421-621 1-238 (530)
276 cd03288 ABCC_SUR2 The SUR doma 100.0 2.2E-30 4.8E-35 277.1 17.6 188 420-621 18-239 (257)
277 cd03215 ABC_Carb_Monos_II This 100.0 3.5E-30 7.7E-35 261.2 18.0 160 421-614 4-182 (182)
278 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.6E-30 1.4E-34 271.2 20.7 187 441-635 8-217 (246)
279 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.3E-30 1.1E-34 263.9 18.9 170 422-620 1-189 (200)
280 PRK10535 macrolide transporter 100.0 9.7E-30 2.1E-34 304.9 24.2 195 420-622 3-229 (648)
281 cd03247 ABCC_cytochrome_bd The 100.0 4.2E-30 9.1E-35 259.7 17.5 165 422-618 1-178 (178)
282 TIGR03771 anch_rpt_ABC anchore 100.0 6.1E-30 1.3E-34 267.9 19.2 172 448-622 1-198 (223)
283 PRK11819 putative ABC transpor 100.0 6.2E-30 1.3E-34 302.2 21.6 192 419-621 4-246 (556)
284 COG4172 ABC-type uncharacteriz 100.0 1E-29 2.2E-34 271.8 20.7 201 418-621 273-512 (534)
285 cd03246 ABCC_Protease_Secretio 100.0 3.9E-30 8.5E-35 258.8 16.1 159 422-614 1-173 (173)
286 cd03229 ABC_Class3 This class 100.0 4E-30 8.6E-35 259.9 16.2 160 422-613 1-178 (178)
287 PRK11174 cysteine/glutathione 100.0 3.3E-30 7.1E-35 307.3 18.3 183 421-621 349-568 (588)
288 COG2274 SunT ABC-type bacterio 100.0 2.9E-30 6.3E-35 306.6 17.4 185 419-620 469-691 (709)
289 COG1119 ModF ABC-type molybden 100.0 2.2E-30 4.8E-35 263.7 13.8 198 415-619 25-256 (257)
290 cd03214 ABC_Iron-Siderophores_ 100.0 2.6E-30 5.7E-35 261.7 14.3 164 423-618 1-180 (180)
291 TIGR01187 potA spermidine/putr 100.0 7.1E-30 1.5E-34 281.8 18.6 161 458-622 1-187 (325)
292 PRK13541 cytochrome c biogenes 100.0 8.1E-30 1.7E-34 261.5 17.1 169 421-606 1-193 (195)
293 cd03291 ABCC_CFTR1 The CFTR su 100.0 3E-29 6.4E-34 270.9 21.7 182 418-622 36-244 (282)
294 PRK11176 lipid transporter ATP 100.0 8.3E-30 1.8E-34 303.5 19.1 185 421-621 341-563 (582)
295 PRK10938 putative molybdenum t 100.0 1E-29 2.2E-34 296.5 18.9 192 419-619 258-486 (490)
296 PRK15064 ABC transporter ATP-b 100.0 1.5E-29 3.1E-34 297.8 20.2 182 420-620 318-520 (530)
297 PRK10982 galactose/methyl gala 100.0 2E-29 4.3E-34 294.1 21.0 193 420-622 249-477 (491)
298 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-29 3E-34 306.9 19.7 180 421-620 451-668 (686)
299 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-29 2.7E-34 299.4 18.5 188 421-620 316-537 (544)
300 PRK11160 cysteine/glutathione 100.0 1.3E-29 2.9E-34 300.6 18.7 183 421-620 338-557 (574)
301 COG0396 sufC Cysteine desulfur 100.0 1E-28 2.3E-33 248.6 21.8 202 420-635 2-239 (251)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.1E-29 8.9E-34 295.1 22.2 192 420-622 3-245 (552)
303 PRK10790 putative multidrug tr 100.0 2.3E-29 5E-34 300.1 19.8 183 421-622 340-560 (592)
304 PRK13409 putative ATPase RIL; 100.0 7.3E-29 1.6E-33 292.8 22.9 198 419-634 338-554 (590)
305 COG4172 ABC-type uncharacteriz 100.0 1.1E-28 2.3E-33 264.0 21.7 198 420-622 5-244 (534)
306 cd03223 ABCD_peroxisomal_ALDP 100.0 4E-29 8.8E-34 249.7 17.4 161 422-612 1-164 (166)
307 cd03228 ABCC_MRP_Like The MRP 100.0 2.5E-29 5.5E-34 252.4 15.9 157 422-613 1-171 (171)
308 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.5E-29 3.3E-34 307.8 17.2 181 421-620 477-695 (710)
309 PRK15177 Vi polysaccharide exp 100.0 5.8E-29 1.3E-33 258.6 18.8 179 441-633 1-196 (213)
310 COG4987 CydC ABC-type transpor 100.0 9.4E-30 2E-34 282.2 13.0 184 421-621 336-557 (573)
311 PRK11819 putative ABC transpor 100.0 5.4E-29 1.2E-33 294.2 20.3 186 420-620 323-528 (556)
312 KOG0057 Mitochondrial Fe/S clu 100.0 2.5E-29 5.4E-34 279.0 16.1 183 421-621 351-570 (591)
313 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-29 1.1E-33 259.9 17.6 173 423-613 2-218 (218)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.6E-29 1.6E-33 292.9 20.6 186 420-620 321-526 (552)
315 PRK13657 cyclic beta-1,2-gluca 100.0 4.1E-29 8.9E-34 297.7 17.7 183 421-621 334-554 (588)
316 KOG0058 Peptide exporter, ABC 100.0 4.8E-29 1E-33 285.8 17.4 189 421-621 465-687 (716)
317 TIGR03375 type_I_sec_LssB type 100.0 3.8E-29 8.3E-34 303.4 17.7 183 421-620 463-683 (694)
318 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-28 2.3E-33 245.9 17.2 147 422-616 1-162 (163)
319 TIGR01192 chvA glucan exporter 100.0 7.2E-29 1.6E-33 294.8 18.7 187 421-621 334-554 (585)
320 TIGR00958 3a01208 Conjugate Tr 100.0 3.9E-29 8.4E-34 303.4 16.6 182 421-620 478-697 (711)
321 TIGR01193 bacteriocin_ABC ABC- 100.0 5.8E-29 1.3E-33 302.5 17.9 182 421-620 473-692 (708)
322 TIGR01846 type_I_sec_HlyB type 100.0 5.5E-29 1.2E-33 301.9 17.2 184 421-621 455-676 (694)
323 KOG0055 Multidrug/pheromone ex 100.0 3.9E-29 8.4E-34 301.2 15.2 188 419-622 348-573 (1228)
324 COG4136 ABC-type uncharacteriz 100.0 3.2E-29 6.9E-34 235.2 11.2 169 421-599 2-199 (213)
325 COG1132 MdlB ABC-type multidru 100.0 7E-29 1.5E-33 294.5 16.9 183 421-621 328-548 (567)
326 PRK10636 putative ABC transpor 100.0 1.9E-28 4.1E-33 293.1 20.1 181 420-620 311-512 (638)
327 TIGR02203 MsbA_lipidA lipid A 100.0 1.5E-28 3.2E-33 292.2 18.1 185 421-621 330-552 (571)
328 PRK10789 putative multidrug tr 100.0 1.4E-28 3E-33 291.8 17.0 184 421-621 313-534 (569)
329 TIGR02204 MsbA_rel ABC transpo 100.0 1.8E-28 3.9E-33 291.7 16.8 184 421-620 337-558 (576)
330 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-28 5.7E-33 260.1 16.0 177 426-619 5-221 (255)
331 PRK10636 putative ABC transpor 100.0 5.2E-28 1.1E-32 289.3 20.3 190 421-621 1-232 (638)
332 PRK11147 ABC transporter ATPas 100.0 1.5E-27 3.3E-32 285.8 20.6 186 419-619 317-522 (635)
333 COG4608 AppF ABC-type oligopep 100.0 1.2E-27 2.6E-32 249.0 16.8 174 420-622 3-196 (268)
334 PRK10522 multidrug transporter 100.0 1.6E-27 3.4E-32 281.7 19.2 179 421-619 322-532 (547)
335 cd03222 ABC_RNaseL_inhibitor T 99.9 2.5E-27 5.5E-32 238.2 16.9 163 425-633 4-171 (177)
336 TIGR01194 cyc_pep_trnsptr cycl 99.9 2E-27 4.4E-32 280.9 19.1 181 421-617 337-551 (555)
337 PRK11147 ABC transporter ATPas 99.9 4.4E-27 9.4E-32 281.9 21.3 187 421-621 3-239 (635)
338 PLN03073 ABC transporter F fam 99.9 6.1E-27 1.3E-31 281.3 22.3 184 420-620 507-709 (718)
339 TIGR02857 CydD thiol reductant 99.9 1.1E-27 2.3E-32 282.2 14.8 172 421-608 320-529 (529)
340 TIGR00954 3a01203 Peroxysomal 99.9 2.7E-27 5.8E-32 284.2 17.3 180 421-612 451-655 (659)
341 PLN03232 ABC transporter C fam 99.9 2.9E-27 6.3E-32 305.5 18.6 183 421-621 1234-1454(1495)
342 PLN03130 ABC transporter C fam 99.9 3.9E-27 8.6E-32 304.5 19.2 184 421-622 1237-1458(1622)
343 COG4618 ArpD ABC-type protease 99.9 8.6E-27 1.9E-31 256.4 18.2 203 413-633 326-564 (580)
344 COG4107 PhnK ABC-type phosphon 99.9 9.1E-27 2E-31 223.6 16.0 188 421-621 6-237 (258)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 8.2E-27 1.8E-31 227.5 16.0 141 422-613 1-144 (144)
346 PTZ00265 multidrug resistance 99.9 2.6E-27 5.6E-32 303.5 15.9 185 421-620 1165-1447(1466)
347 PTZ00265 multidrug resistance 99.9 5.8E-27 1.2E-31 300.3 18.0 187 421-612 382-655 (1466)
348 cd03238 ABC_UvrA The excision 99.9 1.1E-26 2.3E-31 233.5 16.1 136 439-614 7-166 (176)
349 TIGR01271 CFTR_protein cystic 99.9 8.5E-27 1.9E-31 300.7 19.5 183 421-621 1217-1436(1490)
350 TIGR02868 CydC thiol reductant 99.9 5.6E-27 1.2E-31 276.1 15.1 158 421-594 334-528 (529)
351 TIGR00957 MRP_assoc_pro multi 99.9 1.6E-26 3.6E-31 298.9 19.4 183 421-621 1284-1504(1522)
352 PTZ00243 ABC transporter; Prov 99.9 2.2E-26 4.9E-31 297.1 19.9 183 421-621 1308-1529(1560)
353 COG0488 Uup ATPase components 99.9 2.4E-26 5.3E-31 265.1 17.4 190 420-621 2-236 (530)
354 KOG0056 Heavy metal exporter H 99.9 8.2E-27 1.8E-31 253.2 11.1 191 418-621 534-757 (790)
355 COG4167 SapF ABC-type antimicr 99.9 5.7E-26 1.2E-30 219.8 15.6 198 421-622 4-236 (267)
356 KOG0055 Multidrug/pheromone ex 99.9 4.6E-26 1E-30 274.9 17.6 184 421-620 987-1208(1228)
357 PRK13409 putative ATPase RIL; 99.9 3.6E-26 7.8E-31 270.0 15.6 166 426-612 78-287 (590)
358 COG4138 BtuD ABC-type cobalami 99.9 7.9E-26 1.7E-30 217.4 11.6 193 421-633 3-231 (248)
359 PLN03232 ABC transporter C fam 99.9 5.5E-25 1.2E-29 284.4 19.0 185 421-622 614-825 (1495)
360 TIGR00957 MRP_assoc_pro multi 99.9 7.3E-25 1.6E-29 283.7 20.1 185 421-622 636-847 (1522)
361 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.9E-25 1.7E-29 216.6 15.8 141 424-613 2-157 (157)
362 PLN03130 ABC transporter C fam 99.9 7.3E-25 1.6E-29 283.6 18.9 184 421-622 614-825 (1622)
363 PLN03073 ABC transporter F fam 99.9 2.4E-24 5.3E-29 258.9 21.5 184 419-621 175-427 (718)
364 KOG0061 Transporter, ABC super 99.9 1.3E-24 2.7E-29 257.5 18.4 229 95-337 333-606 (613)
365 COG4133 CcmA ABC-type transpor 99.9 5.1E-25 1.1E-29 215.5 10.8 163 421-596 2-192 (209)
366 COG4778 PhnL ABC-type phosphon 99.9 1.3E-24 2.9E-29 208.2 13.1 186 419-609 2-226 (235)
367 TIGR01271 CFTR_protein cystic 99.9 1.6E-24 3.4E-29 279.8 18.1 183 421-622 428-633 (1490)
368 cd03270 ABC_UvrA_I The excisio 99.9 5E-24 1.1E-28 223.6 17.8 171 439-618 7-226 (226)
369 PTZ00243 ABC transporter; Prov 99.9 3.7E-24 8.1E-29 276.6 17.6 179 439-622 672-867 (1560)
370 COG1129 MglA ABC-type sugar tr 99.9 1.5E-22 3.2E-27 228.3 21.4 193 418-622 260-487 (500)
371 COG0488 Uup ATPase components 99.9 7.8E-23 1.7E-27 236.2 18.7 182 418-619 318-519 (530)
372 cd03271 ABC_UvrA_II The excisi 99.9 8.8E-23 1.9E-27 217.1 16.7 169 440-620 8-261 (261)
373 COG5265 ATM1 ABC-type transpor 99.9 1.7E-23 3.7E-28 225.9 11.0 185 420-620 261-481 (497)
374 KOG0054 Multidrug resistance-a 99.9 4.5E-23 9.6E-28 254.8 15.7 183 421-621 1138-1358(1381)
375 KOG0054 Multidrug resistance-a 99.9 1.1E-21 2.3E-26 242.6 18.6 186 420-622 517-728 (1381)
376 cd03278 ABC_SMC_barmotin Barmo 99.9 7.7E-22 1.7E-26 202.5 10.6 142 444-612 14-192 (197)
377 PF00005 ABC_tran: ABC transpo 99.9 7.4E-22 1.6E-26 190.3 9.6 106 443-564 1-137 (137)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.9E-20 4E-25 198.7 12.5 161 439-609 14-234 (243)
379 COG3845 ABC-type uncharacteriz 99.8 2.9E-19 6.2E-24 197.9 21.0 197 419-622 255-489 (501)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.8 8.8E-22 1.9E-26 204.4 -0.6 173 421-610 5-204 (212)
381 cd03279 ABC_sbcCD SbcCD and ot 99.8 6.7E-20 1.4E-24 190.7 11.5 167 421-612 5-209 (213)
382 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.5E-20 5.5E-25 198.8 8.4 152 453-609 25-242 (251)
383 PRK00635 excinuclease ABC subu 99.8 4.9E-19 1.1E-23 224.7 20.0 188 421-622 600-903 (1809)
384 cd03240 ABC_Rad50 The catalyti 99.8 2.2E-19 4.7E-24 185.5 12.0 143 446-613 16-200 (204)
385 COG4170 SapD ABC-type antimicr 99.8 4.7E-19 1E-23 175.2 12.8 199 421-622 3-245 (330)
386 PRK00349 uvrA excinuclease ABC 99.8 2.5E-18 5.5E-23 210.2 19.5 107 503-621 793-923 (943)
387 KOG0927 Predicted transporter 99.8 3.7E-19 8E-24 197.7 9.9 185 419-620 387-591 (614)
388 TIGR00630 uvra excinuclease AB 99.8 8.2E-18 1.8E-22 205.4 19.7 106 503-620 791-920 (924)
389 cd03283 ABC_MutS-like MutS-lik 99.8 1.6E-18 3.5E-23 178.1 10.9 144 439-608 13-163 (199)
390 COG4178 ABC-type uncharacteriz 99.8 2.9E-18 6.3E-23 197.3 13.7 176 419-609 390-587 (604)
391 KOG0927 Predicted transporter 99.7 8.6E-18 1.9E-22 186.9 9.6 187 420-621 74-305 (614)
392 COG4615 PvdE ABC-type sideroph 99.7 6.5E-18 1.4E-22 181.0 7.8 188 421-619 322-531 (546)
393 KOG0062 ATPase component of AB 99.7 8.7E-18 1.9E-22 185.9 7.2 180 421-621 80-281 (582)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.7 7.7E-17 1.7E-21 165.7 13.6 147 443-612 12-191 (198)
395 cd03280 ABC_MutS2 MutS2 homolo 99.7 6E-17 1.3E-21 166.9 12.6 142 443-618 17-172 (200)
396 COG1245 Predicted ATPase, RNas 99.7 2.2E-16 4.7E-21 172.3 15.9 198 420-635 341-557 (591)
397 cd03275 ABC_SMC1_euk Eukaryoti 99.7 2E-17 4.2E-22 176.1 7.5 152 455-614 24-237 (247)
398 KOG0066 eIF2-interacting prote 99.7 2.5E-16 5.4E-21 169.9 13.5 186 416-620 581-786 (807)
399 KOG2355 Predicted ABC-type tra 99.6 3.6E-15 7.9E-20 147.7 15.4 185 420-620 12-232 (291)
400 KOG0062 ATPase component of AB 99.6 1.2E-15 2.6E-20 169.1 13.4 186 417-619 358-563 (582)
401 cd03243 ABC_MutS_homologs The 99.6 1.4E-15 3E-20 157.0 8.1 148 446-620 22-174 (202)
402 KOG0060 Long-chain acyl-CoA tr 99.6 1.3E-14 2.8E-19 162.9 15.2 183 420-613 432-644 (659)
403 COG1245 Predicted ATPase, RNas 99.6 3.6E-15 7.9E-20 162.9 8.8 148 449-609 96-287 (591)
404 cd03277 ABC_SMC5_euk Eukaryoti 99.6 9E-15 2E-19 152.0 10.7 60 552-613 147-211 (213)
405 COG2401 ABC-type ATPase fused 99.5 2E-14 4.4E-19 155.3 11.3 164 439-614 395-587 (593)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.5 2.9E-15 6.4E-20 156.6 4.4 151 439-619 16-175 (222)
407 cd03284 ABC_MutS1 MutS1 homolo 99.5 3.6E-14 7.9E-19 147.8 10.6 151 439-620 17-176 (216)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.5 8E-14 1.7E-18 143.8 9.2 137 439-602 15-158 (204)
409 PRK00635 excinuclease ABC subu 99.5 9.7E-13 2.1E-17 168.1 19.1 108 503-621 1662-1792(1809)
410 cd03239 ABC_SMC_head The struc 99.4 8.5E-13 1.8E-17 133.4 12.9 59 552-612 115-174 (178)
411 PF01061 ABC2_membrane: ABC-2 99.4 1.9E-14 4.2E-19 147.6 0.1 175 100-289 1-210 (210)
412 COG0178 UvrA Excinuclease ATPa 99.4 4.7E-12 1E-16 147.4 16.2 108 503-621 785-915 (935)
413 cd03281 ABC_MSH5_euk MutS5 hom 99.4 4.8E-12 1E-16 131.7 13.6 134 441-601 17-160 (213)
414 TIGR02858 spore_III_AA stage I 99.4 1.5E-12 3.3E-17 139.5 10.1 124 454-620 112-264 (270)
415 cd03241 ABC_RecN RecN ATPase i 99.4 6.4E-12 1.4E-16 136.1 14.7 54 553-609 192-246 (276)
416 cd03227 ABC_Class2 ABC-type Cl 99.3 4E-12 8.7E-17 126.6 10.6 138 445-609 13-154 (162)
417 KOG0064 Peroxisomal long-chain 99.3 2.1E-12 4.6E-17 143.3 9.0 164 421-597 481-671 (728)
418 cd00820 PEPCK_HprK Phosphoenol 99.3 1.4E-12 3.1E-17 119.3 5.9 65 440-511 2-78 (107)
419 KOG0066 eIF2-interacting prote 99.3 9.7E-13 2.1E-17 142.5 5.1 180 419-619 262-493 (807)
420 cd03287 ABC_MSH3_euk MutS3 hom 99.3 8.5E-12 1.8E-16 130.2 11.6 132 439-598 17-157 (222)
421 PRK07721 fliI flagellum-specif 99.2 1.1E-10 2.4E-15 133.0 16.2 160 439-620 145-338 (438)
422 smart00534 MUTSac ATPase domai 99.2 2E-11 4.3E-16 124.3 9.1 122 455-605 1-131 (185)
423 PRK00349 uvrA excinuclease ABC 99.2 5.3E-11 1.1E-15 146.5 12.1 116 503-622 438-582 (943)
424 TIGR00630 uvra excinuclease AB 99.2 8.9E-11 1.9E-15 144.2 12.2 115 503-621 436-579 (924)
425 cd03286 ABC_MSH6_euk MutS6 hom 99.2 2.4E-10 5.2E-15 119.0 13.6 138 439-602 16-160 (218)
426 TIGR01069 mutS2 MutS2 family p 99.2 7.6E-11 1.6E-15 143.3 10.2 125 445-597 313-447 (771)
427 PRK08533 flagellar accessory p 99.2 1.8E-10 3.9E-15 121.3 11.6 135 449-609 20-184 (230)
428 cd03242 ABC_RecF RecF is a rec 99.1 2.1E-10 4.4E-15 123.9 11.5 58 552-614 209-269 (270)
429 KOG0063 RNAse L inhibitor, ABC 99.0 9.4E-10 2E-14 120.0 11.0 162 439-609 348-531 (592)
430 TIGR02788 VirB11 P-type DNA tr 98.9 2.1E-09 4.5E-14 118.3 8.5 128 445-621 136-277 (308)
431 TIGR03062 pip_yhgE_Cterm YhgE/ 98.9 6.6E-09 1.4E-13 107.6 11.4 147 160-336 58-204 (208)
432 PF02463 SMC_N: RecF/RecN/SMC 98.9 2.1E-09 4.5E-14 112.3 7.1 154 444-609 16-212 (220)
433 PRK00064 recF recombination pr 98.9 4.6E-08 9.9E-13 110.0 16.4 58 552-614 299-359 (361)
434 COG3910 Predicted ATPase [Gene 98.8 1.5E-08 3.3E-13 100.0 9.8 57 552-609 145-202 (233)
435 PTZ00132 GTP-binding nuclear p 98.8 3E-08 6.4E-13 103.3 10.3 30 552-581 169-203 (215)
436 PRK13830 conjugal transfer pro 98.8 1.8E-07 3.9E-12 115.6 18.7 66 552-619 651-727 (818)
437 PRK00409 recombination and DNA 98.8 8.5E-09 1.8E-13 126.0 6.8 135 452-616 326-469 (782)
438 TIGR01247 drrB daunorubicin re 98.8 5.1E-08 1.1E-12 103.0 11.7 147 160-333 88-234 (236)
439 KOG0063 RNAse L inhibitor, ABC 98.7 7.5E-09 1.6E-13 113.1 4.1 147 450-609 97-287 (592)
440 cd01124 KaiC KaiC is a circadi 98.7 5.2E-08 1.1E-12 98.7 9.8 57 552-609 94-163 (187)
441 PRK13695 putative NTPase; Prov 98.7 7.6E-09 1.6E-13 104.2 2.2 61 552-619 95-158 (174)
442 PRK06995 flhF flagellar biosyn 98.7 4.8E-08 1E-12 112.2 8.6 97 441-548 244-342 (484)
443 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.3E-08 5E-13 113.0 4.0 47 440-488 19-67 (504)
444 TIGR00025 Mtu_efflux ABC trans 98.6 3.9E-07 8.6E-12 96.1 12.6 149 160-335 77-228 (232)
445 cd01131 PilT Pilus retraction 98.5 2.7E-07 5.8E-12 95.1 8.9 116 455-609 3-122 (198)
446 TIGR01291 nodJ ABC-2 type tran 98.5 1.5E-06 3.2E-11 93.1 14.7 149 160-336 100-248 (253)
447 cd01120 RecA-like_NTPases RecA 98.5 4.8E-07 1E-11 88.7 10.0 46 552-598 84-140 (165)
448 TIGR03881 KaiC_arch_4 KaiC dom 98.5 9.2E-08 2E-12 100.6 5.1 157 440-609 6-188 (229)
449 cd01130 VirB11-like_ATPase Typ 98.5 2.1E-07 4.6E-12 94.8 7.3 70 442-511 14-96 (186)
450 PRK06793 fliI flagellum-specif 98.5 2.9E-07 6.2E-12 104.5 7.7 164 421-619 130-305 (432)
451 PF01061 ABC2_membrane: ABC-2 98.4 8.4E-09 1.8E-13 105.7 -4.6 142 665-808 14-203 (210)
452 TIGR01026 fliI_yscN ATPase Fli 98.4 6.5E-07 1.4E-11 102.4 10.1 159 439-620 150-343 (440)
453 cd01125 repA Hexameric Replica 98.4 1.5E-06 3.2E-11 92.3 12.0 44 552-596 110-160 (239)
454 PRK14079 recF recombination pr 98.4 1.2E-06 2.7E-11 98.0 11.9 59 552-619 289-348 (349)
455 PRK06067 flagellar accessory p 98.4 3.2E-07 6.9E-12 97.0 6.5 151 440-609 11-186 (234)
456 PF06422 PDR_CDR: CDR ABC tran 98.4 4.5E-07 9.9E-12 83.1 5.9 50 306-355 41-90 (103)
457 TIGR03861 phenyl_ABC_PedC alco 98.4 9.6E-06 2.1E-10 86.7 16.6 146 160-335 100-248 (253)
458 PRK13898 type IV secretion sys 98.3 2.8E-06 6.1E-11 105.3 13.3 48 552-600 641-690 (800)
459 cd02023 UMPK Uridine monophosp 98.3 6.7E-07 1.5E-11 91.9 6.6 103 455-568 1-113 (198)
460 TIGR00611 recf recF protein. A 98.3 1.9E-06 4E-11 97.0 10.1 44 552-599 301-345 (365)
461 PRK07196 fliI flagellum-specif 98.3 9.3E-07 2E-11 100.4 6.8 76 439-515 142-240 (434)
462 PRK06002 fliI flagellum-specif 98.3 1.3E-06 2.8E-11 99.4 7.8 74 419-498 137-230 (450)
463 PRK05399 DNA mismatch repair p 98.3 4.2E-06 9E-11 103.8 12.8 129 439-604 594-738 (854)
464 cd01128 rho_factor Transcripti 98.3 2.9E-06 6.3E-11 90.3 9.3 57 552-615 154-212 (249)
465 TIGR01420 pilT_fam pilus retra 98.3 3E-06 6.5E-11 94.7 9.8 121 450-609 119-243 (343)
466 PRK15066 inner membrane transp 98.2 1.6E-05 3.4E-10 85.3 14.7 150 159-336 101-250 (257)
467 TIGR01247 drrB daunorubicin re 98.2 7.7E-06 1.7E-10 86.4 12.0 99 742-845 132-232 (236)
468 PRK13873 conjugal transfer ATP 98.2 1E-05 2.2E-10 100.5 13.0 47 552-599 634-682 (811)
469 PF13304 AAA_21: AAA domain; P 98.2 1.2E-06 2.6E-11 91.6 4.1 42 555-597 259-301 (303)
470 cd01122 GP4d_helicase GP4d_hel 98.2 1.5E-05 3.3E-10 85.9 12.7 160 439-609 16-227 (271)
471 TIGR00618 sbcc exonuclease Sbc 98.2 3.1E-06 6.8E-11 107.9 8.5 72 537-609 939-1034(1042)
472 COG0178 UvrA Excinuclease ATPa 98.1 3.2E-05 6.9E-10 91.5 14.7 151 503-657 430-613 (935)
473 smart00382 AAA ATPases associa 98.1 7.5E-05 1.6E-09 70.3 14.3 115 452-593 1-124 (148)
474 PRK13891 conjugal transfer pro 98.1 2.4E-05 5.3E-10 97.3 13.5 62 552-615 686-751 (852)
475 TIGR00767 rho transcription te 98.0 1.6E-05 3.5E-10 88.9 9.7 53 421-478 130-193 (415)
476 TIGR00025 Mtu_efflux ABC trans 98.0 3.4E-05 7.3E-10 81.4 11.6 99 743-845 122-224 (232)
477 PRK01889 GTPase RsgA; Reviewed 98.0 5.1E-06 1.1E-10 93.2 5.6 128 442-581 184-322 (356)
478 TIGR02655 circ_KaiC circadian 98.0 4.8E-06 1E-10 97.4 5.6 152 440-609 7-190 (484)
479 PF00488 MutS_V: MutS domain V 98.0 0.00012 2.7E-09 77.4 15.5 126 439-597 29-168 (235)
480 PRK06315 type III secretion sy 98.0 1.1E-05 2.4E-10 91.9 8.0 96 439-539 151-277 (442)
481 PRK09862 putative ATP-dependen 98.0 1E-05 2.2E-10 94.0 7.2 58 424-487 187-245 (506)
482 PF13555 AAA_29: P-loop contai 98.0 5.8E-06 1.3E-10 68.2 3.7 34 443-476 12-46 (62)
483 TIGR00416 sms DNA repair prote 98.0 1.7E-05 3.6E-10 91.8 8.7 143 440-612 80-246 (454)
484 PRK09825 idnK D-gluconate kina 98.0 3.9E-06 8.5E-11 84.8 3.0 27 452-478 2-28 (176)
485 cd01121 Sms Sms (bacterial rad 98.0 2.9E-05 6.4E-10 87.4 10.2 142 442-609 70-232 (372)
486 PRK14721 flhF flagellar biosyn 97.9 9.4E-06 2E-10 92.2 5.8 104 450-581 188-294 (420)
487 TIGR01291 nodJ ABC-2 type tran 97.9 5.6E-05 1.2E-09 81.0 11.4 99 742-845 144-243 (253)
488 TIGR00634 recN DNA repair prot 97.9 1.6E-05 3.5E-10 94.8 7.4 56 553-612 462-518 (563)
489 TIGR01248 drrC daunorubicin re 97.9 2.8E-05 6E-10 76.7 7.3 116 160-284 30-145 (152)
490 PLN03210 Resistant to P. syrin 97.9 2.3E-05 4.9E-10 101.1 7.7 141 444-609 198-349 (1153)
491 COG0842 ABC-type multidrug tra 97.8 0.00024 5.1E-09 76.0 14.1 150 162-337 131-281 (286)
492 PRK03918 chromosome segregatio 97.8 2.9E-05 6.4E-10 97.7 7.9 57 552-610 811-868 (880)
493 PRK10246 exonuclease subunit S 97.8 1.4E-05 3.1E-10 101.6 5.0 67 542-609 943-1031(1047)
494 TIGR00235 udk uridine kinase. 97.8 6.5E-06 1.4E-10 85.4 1.2 43 451-501 4-46 (207)
495 PHA02562 46 endonuclease subun 97.8 2.7E-05 5.8E-10 93.0 6.5 58 553-614 496-555 (562)
496 TIGR02903 spore_lon_C ATP-depe 97.8 7.5E-05 1.6E-09 89.7 10.0 108 453-580 175-291 (615)
497 PRK13764 ATPase; Provisional 97.8 3.8E-05 8.3E-10 90.7 7.3 127 451-620 255-400 (602)
498 PRK01156 chromosome segregatio 97.8 9E-05 2E-09 93.5 11.1 60 552-612 824-886 (895)
499 PTZ00035 Rad51 protein; Provis 97.8 1.9E-05 4.1E-10 87.9 4.2 132 441-591 105-263 (337)
500 PRK09270 nucleoside triphospha 97.8 2.4E-05 5.2E-10 82.5 4.7 33 451-483 31-64 (229)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-134 Score=1203.21 Aligned_cols=768 Identities=23% Similarity=0.343 Sum_probs=641.9
Q ss_pred CCcccccccccC-CCcceEeCCC--CCCCCh-hHHHHHHhcCHhHHHHHHHHhhhhhhhhhhhHHhhhhhcccccCCccc
Q 048695 1 MESNEFLEAIIA-GAGSKYIEPE--RTPLTI-DEIIARYRVSDHYKDVMRIVNDDDKKYLIGIVVAKLSTKIAHSGGIES 76 (846)
Q Consensus 1 ~d~ADFL~~vt~-~~~~~~~~~~--~~P~t~-~efa~af~~S~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (846)
+++|||||+||+ +++.||+... .+|.++ +||+++|++|+.|+++..+++.+.+++
T Consensus 364 ~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~--------------------- 422 (1391)
T KOG0065|consen 364 KGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKS--------------------- 422 (1391)
T ss_pred cCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhh---------------------
Confidence 579999999998 4455776544 566655 999999999999999999998765432
Q ss_pred cccccccccccCCCCCCccccHHHHHHHHHHHHHHHHhhccccchhhH----HHHH------------------------
Q 048695 77 TRREDEYHTIWGQFQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSS----TLCL------------------------ 128 (846)
Q Consensus 77 ~~~~~~~~~~~~~~~s~y~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~----~~~~------------------------ 128 (846)
.+++....+++|++++|+|+++|++|++++++||+.++...+ ++++
T Consensus 423 ------k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~l 496 (1391)
T KOG0065|consen 423 ------KKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGAL 496 (1391)
T ss_pred ------hccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHH
Confidence 112334578999999999999999999999999997664331 1111
Q ss_pred -------HHHHHHHHHHHhhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCC
Q 048695 129 -------QQESSNHVNLTLHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAP 201 (846)
Q Consensus 129 -------~~~~~~~l~~~~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~ 201 (846)
...++.|++..++.||||+||| ++.||||||+.++..++++|.+++++++|++|+||++||.++| ++
T Consensus 497 ffsll~~~f~~laEi~~~~~~~pv~~Khr----~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A--~r 570 (1391)
T KOG0065|consen 497 FFALLFNLFNGLAEIALTFQRLPVFYKHR----DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNA--GR 570 (1391)
T ss_pred HHHHHHHHHHhHHHHHHHHhhcchHHHhh----cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcch--HH
Confidence 1335559999999999999999 9999999999999999999999999999999999999999986 89
Q ss_pred ceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHH
Q 048695 202 FFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWAN 281 (846)
Q Consensus 202 Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~ 281 (846)
||+|+| +++++++|++++||++++++|+...|+.+|++.++++.+|+||+||+++||+||+|++|+||+.|++
T Consensus 571 FF~~fL-------~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~f 643 (1391)
T KOG0065|consen 571 FFIQFL-------FLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAF 643 (1391)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCC-C---------C------CCCcc---cccccc----------cccCCCCChHHHHHHHHHHHHHHHHHH
Q 048695 282 ILYCKCQFNEG-Y---------T------DPCTN---FLSVTN----------SQQIAKRPWLPYAILLGWTVLANFLAL 332 (846)
Q Consensus 282 ~al~~nef~~~-~---------~------~~C~~---~~g~~~----------~~~~~~~~w~~~~il~~~~~~~~~~~~ 332 (846)
+++++|||+++ | + ..|.. .+|..- +++...|.|||+||++||.++|+++.+
T Consensus 644 esl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ 723 (1391)
T KOG0065|consen 644 ESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFL 723 (1391)
T ss_pred HHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHH
Confidence 99999999853 1 1 13421 122211 357789999999999999999999999
Q ss_pred HHhhhccccCCCCccccccccccccCCcccccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcccccchhhhhccCC
Q 048695 333 LGRRNIEFTGASQSLPHLRKTSIIHSSKDYSHSKFQSSCSSGSYNSEDLSGYSVPQKLYSGYNHMNEGIKEFYIDVEMNG 412 (846)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (846)
++++|+++...++....+++++.....+..+.+. . .+ ...+.+.. . .+.
T Consensus 724 ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~------~~--~~~~s~~~---~----------------~~~ 772 (1391)
T KOG0065|consen 724 IALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSS----E------IE--KLDDSSHQ---E----------------KNK 772 (1391)
T ss_pred HHHHhcCccccccceeeeccchhhhcchhccccc----c------cc--cccccccc---c----------------ccc
Confidence 9999999998888777776654311111000000 0 00 00000000 0 001
Q ss_pred CCCCCC------ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceE
Q 048695 413 KGIPVE------PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSL 483 (846)
Q Consensus 413 ~~~~~~------~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I 483 (846)
...|.. .....|+|+.++ . +.+++++++|+|||+.++||.+|||||+||||||||||+||||.. ++|+|
T Consensus 773 ~~~~~~~~~~~~~~V~~w~dl~~~-~-~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi 850 (1391)
T KOG0065|consen 773 MVLPFTPLSLTFKDVFYWVDLPYE-M-PIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI 850 (1391)
T ss_pred ccCCCccccccccceEEEEeCCcc-c-cccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE
Confidence 112222 235677777773 2 223467899999999999999999999999999999999999985 99999
Q ss_pred EEcC---------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC----c
Q 048695 484 NGNV---------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGS----L 549 (846)
Q Consensus 484 ~~~G---------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~----l 549 (846)
++|| |.+|||+|+|.|.+. ||||.|.|+|.||+|..++.+++.+.||++++.|||++++|..||. |
T Consensus 851 ~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GL 930 (1391)
T KOG0065|consen 851 LISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGL 930 (1391)
T ss_pred EECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCC
Confidence 9999 789999999999999 9999999999999999999999999999999999999999999998 5
Q ss_pred cC-------------CCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCE
Q 048695 550 HY-------------HCP-SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 550 Sg-------------~~P-~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~ 613 (846)
|. ++| .||||||||||||++++..|++.+|++ +++|+||+| |||+.++++.||++++|+|+|+
T Consensus 931 s~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl-a~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 931 STEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL-ADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred CHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHH-HhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 54 999 789999999999999999999999999 889999999 9999999999999999999999
Q ss_pred EEEecCCCCChHHHHHHHhhCCCCCCCCCCCCcccceeeeccCCCcCCC-----------------------------C-
Q 048695 614 QAYFGPRGSNHDIILDYFLLIPKNPRYSKRESPVRYITGAVGLGITKWG-----------------------------T- 663 (846)
Q Consensus 614 ~v~~G~~~~~~~~l~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~-----------------------------~- 663 (846)
++|+|+++++++.+++||+++++ .+|+++.||||||||+++.+.+... .
T Consensus 1010 tVY~G~lG~~s~~li~YFes~~~-~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~ 1088 (1391)
T KOG0065|consen 1010 TVYFGPLGENSSKLIEYFESIGG-VKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGF 1088 (1391)
T ss_pred EEEecCcccccHHHHHHHHhcCC-ccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999876 5788888999999999987543210 0
Q ss_pred ---------------------------CcccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHH
Q 048695 664 ---------------------------PSLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIG 716 (846)
Q Consensus 664 ---------------------------~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~ 716 (846)
.+||+|+|+++|++..++.||++|++||+.++ +.+|+||.+|++|+.+++.+
T Consensus 1089 ~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~-~~q~lqn~m~a~yma~v~~~ 1167 (1391)
T KOG0065|consen 1089 STDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH-NVQGLQNAMGAAYMATVFSG 1167 (1391)
T ss_pred CcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC-cHHHHHHHHHHHHHHHHHhh
Confidence 08999999999999999999999999999995 89999999999999887777
Q ss_pred HHHHHHHHHHHhhccc------------------------------------------------hhhHHHHHHHHHHHHH
Q 048695 717 VISANNVISQIGTDRI------------------------------------------------CSEFMRYWTVVFLFTL 748 (846)
Q Consensus 717 ~~~~~~~~~~~~~~r~------------------------------------------------~~~f~~~~~~~~~~~~ 748 (846)
..+.....|.+..+|. +.+++|||++++++.+
T Consensus 1168 ~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~l 1247 (1391)
T KOG0065|consen 1168 PNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFL 1247 (1391)
T ss_pred hhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHH
Confidence 6544334444444433 6678899999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCC-------------------
Q 048695 749 CITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPD------------------- 808 (846)
Q Consensus 749 ~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~------------------- 808 (846)
+.+++|+|+.+++||.++|+.+++++++++++|||+++|++.| .||+||||+||++|+.+
T Consensus 1248 Yf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~ 1327 (1391)
T KOG0065|consen 1248 YFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEM 1327 (1391)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCc
Confidence 9999999999999999999999999999999999999999999 99999999999866444
Q ss_pred -------CccHHHHhhhccC----CCCCccchhhHHHHHHHHHHHHH
Q 048695 809 -------GPFVWDRLATERS----LSYERIDKDILILSTMCVLFASL 844 (846)
Q Consensus 809 -------g~~v~~~~~~~~~----~~~~~~~~~~~~l~~~~v~f~~l 844 (846)
|.+++++++.++| |.++.......+.+.+.+++..+
T Consensus 1328 ~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l 1374 (1391)
T KOG0065|consen 1328 NYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFL 1374 (1391)
T ss_pred cccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHH
Confidence 2356888888888 77777555555555555555444
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-117 Score=1123.94 Aligned_cols=796 Identities=18% Similarity=0.285 Sum_probs=635.6
Q ss_pred CCcccccccccCCCcc-eEeCCCCCC---CChhHHHHHHhcCHhHHHHHHHHhhhhhhhhhhhHHhhhhhcccccCCccc
Q 048695 1 MESNEFLEAIIAGAGS-KYIEPERTP---LTIDEIIARYRVSDHYKDVMRIVNDDDKKYLIGIVVAKLSTKIAHSGGIES 76 (846)
Q Consensus 1 ~d~ADFL~~vt~~~~~-~~~~~~~~P---~t~~efa~af~~S~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (846)
+|+||||++|++++++ +|+.....| +|++||+++|++|+.|+++.++++.+..+.
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------------- 498 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKS--------------------- 498 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhh---------------------
Confidence 5899999999998776 565444456 899999999999999999988776432110
Q ss_pred cccccccccccCCCCCCccccHHHHHHHHHHHHHHHHhhccccchhhHHHHH----------------------------
Q 048695 77 TRREDEYHTIWGQFQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCL---------------------------- 128 (846)
Q Consensus 77 ~~~~~~~~~~~~~~~s~y~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~~~~~---------------------------- 128 (846)
.+++...+.++|+.|+|+|+++|++|++++++||+..+..+.++.+
T Consensus 499 ------~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g 572 (1470)
T PLN03140 499 ------QSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIG 572 (1470)
T ss_pred ------hcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Confidence 0011123467799999999999999999999999965532211100
Q ss_pred ---------HHHHHHHHHHHhhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccC
Q 048695 129 ---------QQESSNHVNLTLHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNG 199 (846)
Q Consensus 129 ---------~~~~~~~l~~~~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~ 199 (846)
.+.++.+++.++.+||||+||| +.+||++++|++|++++++|+.++++++|++|+|||+||++++
T Consensus 573 ~lff~~l~~~~~~~~~l~~~~~~r~vf~ker----~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~-- 646 (1470)
T PLN03140 573 ALLFSMIINMFNGFAELALMIQRLPVFYKQR----DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA-- 646 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHhh----hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCch--
Confidence 1234458889999999999999 9999999999999999999999999999999999999999986
Q ss_pred CCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHH
Q 048695 200 APFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYW 279 (846)
Q Consensus 200 ~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~y 279 (846)
++||+|++ ++++++++++++|+++++++|+..+|+.+++++++++++|+||+||+++||+||+|++|+||+.|
T Consensus 647 ~~Ff~f~l-------~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Y 719 (1470)
T PLN03140 647 SRFFKQLL-------LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSY 719 (1470)
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHH
Confidence 89999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCC-CCCC-CCcc---cccccc---cccCC--CCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccc
Q 048695 280 ANILYCKCQFNE-GYTD-PCTN---FLSVTN---SQQIA--KRPWLPYAILLGWTVLANFLALLGRRNIEFTGASQSLPH 349 (846)
Q Consensus 280 a~~al~~nef~~-~~~~-~C~~---~~g~~~---~~~~~--~~~w~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (846)
|++++++|||.+ .|.+ .|.. ..|... +++.. .|.|+|+|+|++|+++|.+++++++++++.........
T Consensus 720 a~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~- 798 (1470)
T PLN03140 720 GFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAII- 798 (1470)
T ss_pred HHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccc-
Confidence 999999999964 4432 2321 122222 34443 46799999999999999999999999988554433321
Q ss_pred ccccccccCCcccccccccccCCCCCCCCCC--CCCCCCCccccc-CCCCCcccccchhhhhccCCCCCCCCceEEEEec
Q 048695 350 LRKTSIIHSSKDYSHSKFQSSCSSGSYNSED--LSGYSVPQKLYS-GYNHMNEGIKEFYIDVEMNGKGIPVEPVTFVFEG 426 (846)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (846)
++.+. ++..+.++......+ .++... ..+...|..... .....++..+... ....++...|..+..++|+|
T Consensus 799 -~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 872 (1470)
T PLN03140 799 -SEETA---EEMEGEEDSIPRSLS-SADGNNTREVAIQRMSNPEGLSKNRDSSLEAANG-VAPKRGMVLPFTPLAMSFDD 872 (1470)
T ss_pred -cccch---hhhhccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccCCCcceEEEEE
Confidence 11110 000000000000000 000000 000000000000 0000000000000 00112344577788999999
Q ss_pred eeeeeeccCC--------CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC--------
Q 048695 427 LTFSRYEEGS--------NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV-------- 487 (846)
Q Consensus 427 l~~~~~~~~~--------~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G-------- 487 (846)
|+| ...... .+++++|+|||++++|||++|||||||||||||||+|+|+.+ .+|+|.+||
T Consensus 873 v~y-~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~ 951 (1470)
T PLN03140 873 VNY-FVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 951 (1470)
T ss_pred EEE-EEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHh
Confidence 999 442111 134579999999999999999999999999999999999974 789999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC-----CccC---------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVG-----SLHY--------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~-----~lSg--------- 551 (846)
+.+|||+|+|.+++. ||+|+|.|++.+|.|...+++++.++++++++.+||++++|+++| +|||
T Consensus 952 ~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa 1031 (1470)
T PLN03140 952 ARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031 (1470)
T ss_pred hhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHH
Confidence 458999999999999 999999999988877666677777889999999999999999985 6887
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh-hHHhhcCEEEEEccCCEEEEecCCCCChH
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA-RTVPFFDLALILTKEGHQAYFGPRGSNHD 625 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~-~i~~~~D~vllL~~~G~~v~~G~~~~~~~ 625 (846)
.+|+||||||||||||+.++..+++.|+++ +++|+|||| +|+.+ ++++.||++++|+++|+++|+|+++++++
T Consensus 1032 ~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l-~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~ 1110 (1470)
T PLN03140 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110 (1470)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccc
Confidence 999999999999999999999999999999 677999999 66655 78899999999994489999999998888
Q ss_pred HHHHHHhhCCCCCCCCCCCCcccceeeeccCCCcCC---------------------------------C----CC----
Q 048695 626 IILDYFLLIPKNPRYSKRESPVRYITGAVGLGITKW---------------------------------G----TP---- 664 (846)
Q Consensus 626 ~l~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~---------------------------------~----~~---- 664 (846)
++.+||+++++.++||++.|||||++|+++.+.... . ..
T Consensus 1111 ~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1190 (1470)
T PLN03140 1111 KIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQS 1190 (1470)
T ss_pred cHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCC
Confidence 999999998665679999999999999986432100 0 00
Q ss_pred ---------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048695 665 ---------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYK--DIFGVTSHSLCIYMQVILIGVISANNVISQI 727 (846)
Q Consensus 665 ---------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 727 (846)
+||||.|+..|+++++++|+++|++||+++++ +.+++++++|++|++++++++.++++++|.+
T Consensus 1191 ~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~ 1270 (1470)
T PLN03140 1191 TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMV 1270 (1470)
T ss_pred HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999863 2478889999999999999988888889998
Q ss_pred hhccc------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048695 728 GTDRI------------------------------------------------CSEFMRYWTVVFLFTLCITYFGMMVTF 759 (846)
Q Consensus 728 ~~~r~------------------------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~~ 759 (846)
..||. +..|++|++++++..++++++|+++++
T Consensus 1271 ~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a 1350 (1470)
T PLN03140 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS 1350 (1470)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776 567899999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCccc---------CCC--------C----ccHHHHhh
Q 048695 760 LAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQ---------LPD--------G----PFVWDRLA 817 (846)
Q Consensus 760 ~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~---------~~~--------g----~~v~~~~~ 817 (846)
++|+..+|+.++++++.++++||||++|+++| +||+|+||+||++| +.+ | .++.++++
T Consensus 1351 ~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1430 (1470)
T PLN03140 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQ 1430 (1470)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHH
Confidence 99999999999999999999999999999999 99999999999844 322 1 23568899
Q ss_pred hccCCCCCccchhhHHHHHHHHHHHHHh
Q 048695 818 TERSLSYERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 818 ~~~~~~~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
++|||+++++|++++++++|+++|++++
T Consensus 1431 ~~~g~~~~~~~~~~~il~~~~~~f~~~~ 1458 (1470)
T PLN03140 1431 DHYGYDPDFMGPVAAVLVGFTVFFAFIF 1458 (1470)
T ss_pred HhcCcCcccccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.1e-114 Score=1095.01 Aligned_cols=793 Identities=19% Similarity=0.275 Sum_probs=631.0
Q ss_pred CCcccccccccCCCcceEeCC--CCCCCChhHHHHHHhcCHhHHHHHHHHhhhhhhhhhhhHHhhhhhcccccCCccccc
Q 048695 1 MESNEFLEAIIAGAGSKYIEP--ERTPLTIDEIIARYRVSDHYKDVMRIVNDDDKKYLIGIVVAKLSTKIAHSGGIESTR 78 (846)
Q Consensus 1 ~d~ADFL~~vt~~~~~~~~~~--~~~P~t~~efa~af~~S~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (846)
+|+||||+++++|++|++... +++|++++||+++|++|+.|+++.++++++.+++..+...+.+..
T Consensus 313 ~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 380 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE------------ 380 (1394)
T ss_pred CChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH------------
Confidence 479999999999998775432 368999999999999999999999999876543321111001100
Q ss_pred cccccccccCCCCCCccccHHHHHHHHHHHHHHHHhhccccchhhHHHHH------------------------------
Q 048695 79 REDEYHTIWGQFQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCL------------------------------ 128 (846)
Q Consensus 79 ~~~~~~~~~~~~~s~y~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~~~~~------------------------------ 128 (846)
....++++..++.++|..|+|+|+++|++|++++++||+..+..+.+..+
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~ 460 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFA 460 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Confidence 00112233345677899999999999999999999999976643321111
Q ss_pred ----HHHHHHHHHHHhhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCcee
Q 048695 129 ----QQESSNHVNLTLHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQ 204 (846)
Q Consensus 129 ----~~~~~~~l~~~~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~ 204 (846)
.+.++.+++..+.+|+||+||| .+++|++++|++|++++++|+.++++++|++|+|||+||++++ ++||+
T Consensus 461 ~~~~~~~~~~~i~~~~~eR~i~~re~----~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~--~~Ff~ 534 (1394)
T TIGR00956 461 ILFNAFSSLLEIASMYEARPIVEKHR----KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA--GRFFF 534 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCcceeeec----cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH--HHHHH
Confidence 1234458888889999999999 9999999999999999999999999999999999999999986 89999
Q ss_pred eehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHh
Q 048695 205 YLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILY 284 (846)
Q Consensus 205 f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al 284 (846)
|++ +++++++++.++++++++++||...|+.+++++++++++|+||+||+++||+||+|++|+||+.|+++++
T Consensus 535 f~l-------~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal 607 (1394)
T TIGR00956 535 YLL-------ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESL 607 (1394)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCC--------------------Cccc---cccc----------ccccCCCCChHHHHHHHHHHHHHHHHH
Q 048695 285 CKCQFNEGYTDP--------------------CTNF---LSVT----------NSQQIAKRPWLPYAILLGWTVLANFLA 331 (846)
Q Consensus 285 ~~nef~~~~~~~--------------------C~~~---~g~~----------~~~~~~~~~w~~~~il~~~~~~~~~~~ 331 (846)
++|||.+. ... |+.. .|+. .+++..+|.|+|+||+++|+++|.+++
T Consensus 608 ~~nef~~~-~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~ 686 (1394)
T TIGR00956 608 MVNEFHGR-RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVY 686 (1394)
T ss_pred HHhhhcCC-cccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999742 123 4311 1111 147788999999999999999999999
Q ss_pred HHHhhhccccCCCCccccccccccccCCccc-ccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcccccchhhhhcc
Q 048695 332 LLGRRNIEFTGASQSLPHLRKTSIIHSSKDY-SHSKFQSSCSSGSYNSEDLSGYSVPQKLYSGYNHMNEGIKEFYIDVEM 410 (846)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (846)
++++++++....++....+.++......+.. +.+....+ .++..+......+... +... + .++
T Consensus 687 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~----~~~~---~--~~~--- 750 (1394)
T TIGR00956 687 ILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKND----IEAGEVLGSTDLTDES----DDVN---D--EKD--- 750 (1394)
T ss_pred HHHHHhccccCCCCceEeeccccccchhhccccccccccc----ccccccCCCCcccccc----cccc---c--ccc---
Confidence 9999999876655444344432220000000 00000000 0000000000000000 0000 0 000
Q ss_pred CCCCCCCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEc
Q 048695 411 NGKGIPVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGN 486 (846)
Q Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~ 486 (846)
........+++++||++ .++. +++++.+|+|||+++++||++|||||||||||||||+|+|+.+ .+|+|.+|
T Consensus 751 --~~~~~~~~~l~~~nl~~-~~~~-~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~ 826 (1394)
T TIGR00956 751 --MEKESGEDIFHWRNLTY-EVKI-KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN 826 (1394)
T ss_pred --ccccCCCceEEEEeeEE-EecC-CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence 00112235799999999 6642 2335789999999999999999999999999999999999974 67999999
Q ss_pred C--------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC----CccC--
Q 048695 487 V--------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVG----SLHY-- 551 (846)
Q Consensus 487 G--------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~----~lSg-- 551 (846)
| +.+|||+|+|.+++. ||+|||.|++.+|.|...+++++.++++++++.+||++++|+.++ ++||
T Consensus 827 G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 827 GRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred CEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHH
Confidence 9 468999999999999 999999999998877666777888899999999999999999998 6887
Q ss_pred -----------CCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh-HHhhcCEEEEEccCC-EEEE
Q 048695 552 -----------HCPS-ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYAR-TVPFFDLALILTKEG-HQAY 616 (846)
Q Consensus 552 -----------~~P~-iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~-i~~~~D~vllL~~~G-~~v~ 616 (846)
.+|+ ||||||||||||+.++..+++.|+++ +++|+|||+ +|+++. +++.||++++|+ +| ++++
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l-a~~g~tvI~t~H~~~~~~~~~~D~vl~L~-~GG~iv~ 984 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL-ADHGQAILCTIHQPSAILFEEFDRLLLLQ-KGGQTVY 984 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHhcCEEEEEc-CCCEEEE
Confidence 8997 99999999999999999999999999 678999999 666554 678999999999 65 9999
Q ss_pred ecCCCCChHHHHHHHhhCCCCCCCCCCCCcccceeeeccCCCcCC---------------------------------C-
Q 048695 617 FGPRGSNHDIILDYFLLIPKNPRYSKRESPVRYITGAVGLGITKW---------------------------------G- 662 (846)
Q Consensus 617 ~G~~~~~~~~l~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~---------------------------------~- 662 (846)
+|++++.++++.+||+..| .++||++.|||||++|+++.+.... .
T Consensus 985 ~G~~~~~~~~~~~yf~~~G-~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1394)
T TIGR00956 985 FGDLGENSHTIINYFEKHG-APKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDD 1063 (1394)
T ss_pred ECCcccccchHHHHHHhcC-CCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccc
Confidence 9999988889999999865 3489999999999999876421100 0
Q ss_pred ---C---C-------------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHH
Q 048695 663 ---T---P-------------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGV 717 (846)
Q Consensus 663 ---~---~-------------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~ 717 (846)
. . +||||.+...|+++++++|+++|++||++++ +..++|+|+|++|+.+++.++
T Consensus 1064 ~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1064 NDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 7999999999999999999999999999996 789999999999998877665
Q ss_pred HHHHHHHHHHhhccc-------------------------------------------------hh-------hHHHHHH
Q 048695 718 ISANNVISQIGTDRI-------------------------------------------------CS-------EFMRYWT 741 (846)
Q Consensus 718 ~~~~~~~~~~~~~r~-------------------------------------------------~~-------~f~~~~~ 741 (846)
. .++.+|.+..+|. +. +|++||+
T Consensus 1143 ~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~ 1221 (1394)
T TIGR00956 1143 L-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWL 1221 (1394)
T ss_pred H-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHH
Confidence 5 4456666655443 22 2889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCC------------
Q 048695 742 VVFLFTLCITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPD------------ 808 (846)
Q Consensus 742 ~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~------------ 808 (846)
+++++.++++++|+++++++|+..+|+.++++++.++++||||++|+++| .||+|++|+||++|..+
T Consensus 1222 ~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~ 1301 (1394)
T TIGR00956 1222 LSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPV 1301 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCee
Confidence 99999999999999999999999999999999999999999999999999 99999999999733222
Q ss_pred ----------------------------------------Cc-----cHHHHhhhccCCCCCccchhhHHHHHHHHHHHH
Q 048695 809 ----------------------------------------GP-----FVWDRLATERSLSYERIDKDILILSTMCVLFAS 843 (846)
Q Consensus 809 ----------------------------------------g~-----~v~~~~~~~~~~~~~~~~~~~~~l~~~~v~f~~ 843 (846)
.| ..++.+++.+++++++.|+|++++++|++++.+
T Consensus 1302 ~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~~~ 1381 (1394)
T TIGR00956 1302 TCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNII 1381 (1394)
T ss_pred ecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHHHH
Confidence 02 135667888999999999999999999998844
Q ss_pred H
Q 048695 844 L 844 (846)
Q Consensus 844 l 844 (846)
.
T Consensus 1382 ~ 1382 (1394)
T TIGR00956 1382 A 1382 (1394)
T ss_pred H
Confidence 3
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-66 Score=613.65 Aligned_cols=419 Identities=25% Similarity=0.418 Sum_probs=374.4
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC------
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV------ 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G------ 487 (846)
.+..++|+|++++ ..++.+..+++|+|||+.++|||++|||||||||||||||+|+|+.+ .+|+|++||
T Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 22 EPVKLSFRNLTLS-SKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred ccceeEEEEEEEE-ecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 3457999999994 33222246899999999999999999999999999999999999985 899999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-----ccC-------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGS-----LHY------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~-----lSg------- 551 (846)
+.+|||.|||.++|+ ||+|+|.|+|.+|+|...++++++++|++++++|||++++|+++|+ +||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence 679999999999999 9999999999999999889999999999999999999999999985 676
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCEEEEecCCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGHQAYFGPRGSN 623 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~ 623 (846)
.+|+||||||||||||+.++.++++.|+++ +++|+|||| |||+.+++++||++++|. +|+++|+|++
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l-A~~grtVi~tIHQPss~lf~lFD~l~lLs-~G~~vy~G~~--- 255 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL-ARSGRTVICTIHQPSSELFELFDKLLLLS-EGEVVYSGSP--- 255 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH-HhCCCEEEEEEeCCcHHHHHHHhHhhhhc-CCcEEEecCH---
Confidence 999999999999999999999999999999 555999999 999999999999999999 9999999999
Q ss_pred hHHHHHHHhhCCCCCCCCCCCCcccceeeeccCC--Cc---------------------CC-----C-------------
Q 048695 624 HDIILDYFLLIPKNPRYSKRESPVRYITGAVGLG--IT---------------------KW-----G------------- 662 (846)
Q Consensus 624 ~~~l~~~f~~~~~~~~~~~~~npa~~~l~~~~~~--~~---------------------~~-----~------------- 662 (846)
+++.+||++.| ++||++.||+||++|+++.. .. .+ .
T Consensus 256 -~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (613)
T KOG0061|consen 256 -RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGT 332 (613)
T ss_pred -HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccccccccccc
Confidence 78999999988 78999999999999988732 00 00 0
Q ss_pred CC----------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048695 663 TP----------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGVISANNVISQ 726 (846)
Q Consensus 663 ~~----------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 726 (846)
.. .+|||.+...|+.+.+++|+++|++||+.++ +..+++++.+.+|+.+.++.+..+.+.++.
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~ 411 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRLGLFFFILSFMTFLSMFGAVPV 411 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00 5899999999999999999999999999986 778888999999998888888888878888
Q ss_pred Hhhccc------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048695 727 IGTDRI------------------------------------------------CSEFMRYWTVVFLFTLCITYFGMMVT 758 (846)
Q Consensus 727 ~~~~r~------------------------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~ 758 (846)
++.||. ...|+.|++.+++..+.+.++|++++
T Consensus 412 f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~ 491 (613)
T KOG0061|consen 412 FPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFIS 491 (613)
T ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876 44677888889999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCC------------Ccc---------HHHHh
Q 048695 759 FLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPD------------GPF---------VWDRL 816 (846)
Q Consensus 759 ~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~------------g~~---------v~~~~ 816 (846)
++.|+...|..+++++..++++|+|++++.+++ .||+|+.|+|++.|..+ .|+ ....+
T Consensus 492 ~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 571 (613)
T KOG0061|consen 492 AIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDV 571 (613)
T ss_pred HhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHH
Confidence 999999999999999999999999999999999 99999999999733222 111 24567
Q ss_pred hhccCCCCCccchhhHHHHHHHHHHHHHhC
Q 048695 817 ATERSLSYERIDKDILILSTMCVLFASLAF 846 (846)
Q Consensus 817 ~~~~~~~~~~~~~~~~~l~~~~v~f~~l~~ 846 (846)
+...+++.++.|.|+.++++++++|++++|
T Consensus 572 l~~~~~~~~~~~~~l~~l~~~~~~~~il~y 601 (613)
T KOG0061|consen 572 LKQLGFEDSSFWLDLLVLLAFIVFFRVLGY 601 (613)
T ss_pred HHhcCCcccccchhHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999975
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-64 Score=603.07 Aligned_cols=400 Identities=22% Similarity=0.319 Sum_probs=357.0
Q ss_pred CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC---------eEEEEEeccCcCCCC-C
Q 048695 438 ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV---------LLLCYVEKLDAHQTY-S 503 (846)
Q Consensus 438 ~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G---------~~igyv~Q~~~~~~~-T 503 (846)
+++++|+|||+++++||++||+|||||||||||++|+|+.+ .+|+|.+|| +.+|||+|+|.+++. |
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 36789999999999999999999999999999999999975 479999999 368999999999999 9
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------ccC-------------CCCcEEEEeCCCC
Q 048695 504 VSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGS------LHY-------------HCPSILLLEEPLS 564 (846)
Q Consensus 504 V~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~------lSg-------------~~P~iLlLDEPTs 564 (846)
|+|||.|++.++.+...++++++++++++++.+||.+++|+++|+ +|| .+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999999999998877777788888999999999999999999984 887 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhCCCCCCCCC
Q 048695 565 GVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLIPKNPRYSK 642 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~~~~~~~~~ 642 (846)
|||+.++..+++.|+++ +++|+|||+ ||+..+++++||++++|+ +|+++|+|++ +++.+||++.| .+||+
T Consensus 196 gLD~~~~~~l~~~L~~l-~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~ 267 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGL-AQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPE 267 (617)
T ss_pred chhHHHHHHHHHHHHHH-HhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCC
Confidence 99999999999999999 667999999 555568999999999999 9999999998 78899999987 78999
Q ss_pred CCCcccceeeeccCCCcCC--------------------------------------CC----------C----------
Q 048695 643 RESPVRYITGAVGLGITKW--------------------------------------GT----------P---------- 664 (846)
Q Consensus 643 ~~npa~~~l~~~~~~~~~~--------------------------------------~~----------~---------- 664 (846)
+.|||||++|+++...... .+ .
T Consensus 268 ~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 347 (617)
T TIGR00955 268 NYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALL 347 (617)
T ss_pred CCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHH
Confidence 9999999999875321100 00 0
Q ss_pred ------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------
Q 048695 665 ------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGVISANNVISQIGTDRI------ 732 (846)
Q Consensus 665 ------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~r~------ 732 (846)
.||||.+...|+++.+++|+++|++|++++. +..+++++.+++|++++++++..+...++.+..||.
T Consensus 348 ~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 348 KRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999996 788999999999998888888777777777777766
Q ss_pred ------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 048695 733 ------------------------------------------CSEFMRYWTVVFLFTLCITYFGMMVTFLAPLPTLAAFH 770 (846)
Q Consensus 733 ------------------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 770 (846)
+..|+.|++++++..++++++|+++++++|+...|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 55788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCc-ceeeeecccCCc---------ccCCC----C---------cc-HHHHhhhccCCCCCc
Q 048695 771 VSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAK---------PQLPD----G---------PF-VWDRLATERSLSYER 826 (846)
Q Consensus 771 ~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~---------~~~~~----g---------~~-v~~~~~~~~~~~~~~ 826 (846)
+++++.++++|+||+++.++| +||+|++|+||+ +++.+ . |. .++++++.||++.++
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~ 586 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD 586 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCccc
Confidence 999999999999999999999 999999999997 33322 1 21 257888999999999
Q ss_pred cchhhHHHHHHHHHHHHHhC
Q 048695 827 IDKDILILSTMCVLFASLAF 846 (846)
Q Consensus 827 ~~~~~~~l~~~~v~f~~l~~ 846 (846)
+|+|++++++++++|++++|
T Consensus 587 ~~~~~~il~~~~~~~~~l~~ 606 (617)
T TIGR00955 587 LYLDLIGLVILIFFFRLLAY 606 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.2e-64 Score=597.59 Aligned_cols=395 Identities=23% Similarity=0.315 Sum_probs=341.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC--------eEEEEEeccCcCCCC-CHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV--------LLLCYVEKLDAHQTY-SVSE 506 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G--------~~igyv~Q~~~~~~~-TV~E 506 (846)
++++|+|||+++++||++||+||||||||||||+|+|+.+ .+|+|.+|| +++|||+|++.+++. ||+|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 5779999999999999999999999999999999999974 489999999 469999999999999 9999
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC-----CccC-------------CCCcEEEEeCCCCCCCH
Q 048695 507 SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVG-----SLHY-------------HCPSILLLEEPLSGVDT 568 (846)
Q Consensus 507 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~-----~lSg-------------~~P~iLlLDEPTsgLD~ 568 (846)
|+.+++.++.+...++++++++++++++.+||++++|+++| ++|| .+|+||+|||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 99999887766555667777889999999999998876654 5787 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChh-hHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhCCCCCCCCCCCCc
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYA-RTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLIPKNPRYSKRESP 646 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~-~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~~~~~~~~~~~np 646 (846)
.++..+++.|+++ +++|+|||+ +|+.+ ++.++||++++|+ +|++++.|++ +++.+||++.| .+||.+.||
T Consensus 240 ~~~~~l~~~L~~l-~~~g~TvI~~sH~~~~~i~~~~D~iilL~-~G~iv~~G~~----~~~~~~f~~~G--~~~P~~~Np 311 (659)
T PLN03211 240 TAAYRLVLTLGSL-AQKGKTIVTSMHQPSSRVYQMFDSVLVLS-EGRCLFFGKG----SDAMAYFESVG--FSPSFPMNP 311 (659)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhhceEEEec-CCcEEEECCH----HHHHHHHHHCC--CCCCCCCCH
Confidence 9999999999999 667999999 77766 6999999999999 9999999998 78999999987 789999999
Q ss_pred ccceeeeccCCCc--------------------------------------C-C---------C--------C-C-----
Q 048695 647 VRYITGAVGLGIT--------------------------------------K-W---------G--------T-P----- 664 (846)
Q Consensus 647 a~~~l~~~~~~~~--------------------------------------~-~---------~--------~-~----- 664 (846)
|||++|+++.... . . + . .
T Consensus 312 ADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 312 ADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9999998753100 0 0 0 0 0
Q ss_pred ----------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q 048695 665 ----------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGVISANNVISQIGTDRI-- 732 (846)
Q Consensus 665 ----------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~r~-- 732 (846)
.||++.+...|+++++++|+++|++||+++ ..++++|.|++|++++++++.++...++.++.||.
T Consensus 392 ~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~ 468 (659)
T PLN03211 392 FSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIF 468 (659)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 478888889999999999999999999985 46899999999998888888877788888888877
Q ss_pred ----------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 048695 733 ----------------------------------------------CSEFMRYWTVVFLFTLCITYFGMMVTFLAPLPTL 766 (846)
Q Consensus 733 ----------------------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~ 766 (846)
+.+|++|++++++..++++++|+++++++|+...
T Consensus 469 ~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~ 548 (659)
T PLN03211 469 VKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKK 548 (659)
T ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCc---------ccCCCC--------ccHH-------HHhhhccC
Q 048695 767 AAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAK---------PQLPDG--------PFVW-------DRLATERS 821 (846)
Q Consensus 767 A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~---------~~~~~g--------~~v~-------~~~~~~~~ 821 (846)
|+.++++++.++++|+||+++ +| +||+|++|+||+ +++.++ |... ..+.....
T Consensus 549 a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~ 626 (659)
T PLN03211 549 ASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDV 626 (659)
T ss_pred HHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhh
Confidence 999999999999999999997 79 999999999998 334321 2100 11223334
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhC
Q 048695 822 LSYERIDKDILILSTMCVLFASLAF 846 (846)
Q Consensus 822 ~~~~~~~~~~~~l~~~~v~f~~l~~ 846 (846)
++....|.|+++|++++++|++++|
T Consensus 627 ~~~~~~~~~~~~l~~~~~~~~~l~~ 651 (659)
T PLN03211 627 AGQISPATSVSVLIFMFVGYRLLAY 651 (659)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHH
Confidence 5556799999999999999999875
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.6e-61 Score=614.34 Aligned_cols=399 Identities=18% Similarity=0.249 Sum_probs=345.5
Q ss_pred CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-----cccceEEEcC-----------eEEEEEeccCcCCC
Q 048695 438 ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-----PFTGSLNGNV-----------LLLCYVEKLDAHQT 501 (846)
Q Consensus 438 ~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-----~~~G~I~~~G-----------~~igyv~Q~~~~~~ 501 (846)
.++++|+|||+.+++||+++|+||||||||||||+|+|+. +.+|+|.+|| +.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 3467999999999999999999999999999999999985 3899999999 24899999999999
Q ss_pred C-CHHHHHHHHHhhhcCC----CCCHHHHHHH-HHHHHHHcCCCcccccccC-----CccC-------------CCCcEE
Q 048695 502 Y-SVSESIQFSAALRVGK----TVNAMRRHIH-VELVLNQLGLLPYSNQLVG-----SLHY-------------HCPSIL 557 (846)
Q Consensus 502 ~-TV~E~l~f~a~lr~~~----~~~~~~~~~~-v~~~l~~l~L~~~~~~~v~-----~lSg-------------~~P~iL 557 (846)
. ||+|+|.|++++|.|. +.+++++.++ ++++|+.+||++++|+++| ++|| .+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 9 9999999999887653 2344554444 5779999999999998875 5888 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhCC
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLIP 635 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~~ 635 (846)
+|||||+|||+.++.++++.|++++++.|+|||+ ||++++++++||++++|+ +|+++++|++ +++.+||++.|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHcC
Confidence 9999999999999999999999995456999999 556789999999999999 9999999998 78999999987
Q ss_pred CCCCCCCCCCcccceeeeccCCCc-------C-------------------------------C----------------
Q 048695 636 KNPRYSKRESPVRYITGAVGLGIT-------K-------------------------------W---------------- 661 (846)
Q Consensus 636 ~~~~~~~~~npa~~~l~~~~~~~~-------~-------------------------------~---------------- 661 (846)
.+||++.|||||++|+++.... . .
T Consensus 307 --~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 --FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred --CCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 7899999999999998753210 0 0
Q ss_pred -----C---CC-------------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHH
Q 048695 662 -----G---TP-------------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVIL 714 (846)
Q Consensus 662 -----~---~~-------------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~ 714 (846)
. .+ .|||+.++..|+++.+++|+++|++||+++. ++.++++|.|++|+++++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r~g~lf~~~~~ 463 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSRGGALFFAILF 463 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHH
Confidence 0 00 7999999999999999999999999999996 678999999999999988
Q ss_pred HHHHHHHHHHHHHhhccc------------------------------------------------hhhHHHHHHHHHHH
Q 048695 715 IGVISANNVISQIGTDRI------------------------------------------------CSEFMRYWTVVFLF 746 (846)
Q Consensus 715 ~~~~~~~~~~~~~~~~r~------------------------------------------------~~~f~~~~~~~~~~ 746 (846)
.++.++.. ++.+..||. ++.||.|++++++.
T Consensus 464 ~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~ 542 (1394)
T TIGR00956 464 NAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFIC 542 (1394)
T ss_pred HHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHH
Confidence 88877644 455556666 57899999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCc---------ccCCC---Cc---
Q 048695 747 TLCITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAK---------PQLPD---GP--- 810 (846)
Q Consensus 747 ~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~---------~~~~~---g~--- 810 (846)
.++++++|+++++++|+...|+.++++++.++++|+||++|.++| +||+|++|+||+ +++.+ .|
T Consensus 543 ~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~ 622 (1394)
T TIGR00956 543 TLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQY 622 (1394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccccc
Confidence 999999999999999999999999999999999999999999999 999999999997 33322 11
Q ss_pred ---------------------------c-HH-HHhhhccCCCCCccchhhHHHHHHHHHHHHHh
Q 048695 811 ---------------------------F-VW-DRLATERSLSYERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 811 ---------------------------~-v~-~~~~~~~~~~~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
. .+ +++...|+++++++|+|++++++|+++|++++
T Consensus 623 ~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~ 686 (1394)
T TIGR00956 623 VPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVY 686 (1394)
T ss_pred ccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 1 23 45555899999999999999999999999876
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-59 Score=595.63 Aligned_cols=401 Identities=17% Similarity=0.209 Sum_probs=337.5
Q ss_pred CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c---cceEEEcC---------eEEEEEeccCcCCCC-C
Q 048695 438 ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F---TGSLNGNV---------LLLCYVEKLDAHQTY-S 503 (846)
Q Consensus 438 ~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~---~G~I~~~G---------~~igyv~Q~~~~~~~-T 503 (846)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+++ . +|+|.+|| +.+|||+|+|.|++. |
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 35679999999999999999999999999999999999974 4 99999999 458999999999999 9
Q ss_pred HHHHHHHHHhhhcCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccc-----C
Q 048695 504 VSESIQFSAALRVGK-------TVNAMRR------------------------HIHVELVLNQLGLLPYSNQLV-----G 547 (846)
Q Consensus 504 V~E~l~f~a~lr~~~-------~~~~~~~------------------------~~~v~~~l~~l~L~~~~~~~v-----~ 547 (846)
|+|+|.|+++++.+. ..+++++ ...++++|+.+||++++|+.+ +
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998876321 1112221 123678999999999887655 4
Q ss_pred CccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCC
Q 048695 548 SLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 548 ~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G 612 (846)
++|| .+|++|||||||+|||+.++.++++.|++++++.|+|+|+ |||.++++++||++++|+ +|
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EG 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-Cc
Confidence 6787 8999999999999999999999999999995556899999 667789999999999999 99
Q ss_pred EEEEecCCCCChHHHHHHHhhCCCCCCCCCCCCcccceeeeccCCCc--------CC---C-------------------
Q 048695 613 HQAYFGPRGSNHDIILDYFLLIPKNPRYSKRESPVRYITGAVGLGIT--------KW---G------------------- 662 (846)
Q Consensus 613 ~~v~~G~~~~~~~~l~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~--------~~---~------------------- 662 (846)
+++|+|++ +++.+||++.| ++||++.|||||++|+++.... .. .
T Consensus 415 ~ivy~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999998 78999999987 7899999999999999764211 00 0
Q ss_pred ------------C-------C-------------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCC--ChhhHH
Q 048695 663 ------------T-------P-------------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYK--DIFGVT 702 (846)
Q Consensus 663 ------------~-------~-------------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~--~~~~~~ 702 (846)
. . .+||+.+...|+++.+++|+++|++||+++.+ +..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 0 0 68999999999999999999999999999742 223456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------------------------hh
Q 048695 703 SHSLCIYMQVILIGVISANNVISQIGTDRI------------------------------------------------CS 734 (846)
Q Consensus 703 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~r~------------------------------------------------~~ 734 (846)
.+.|++|++++++.+.++ ..++.++.+|. ++
T Consensus 569 ~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 778888887777665544 33444444444 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCc---------c
Q 048695 735 EFMRYWTVVFLFTLCITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAK---------P 804 (846)
Q Consensus 735 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~---------~ 804 (846)
+||.|++++++..++++++++++++++|+..+|+.+++++++++++|+||++|.++| +||+|++|+||+ +
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 999999999997 4
Q ss_pred cCCC-----------CccHHHHhhhccCCCCCc--cchhhHHHHHHHHHHHHHhC
Q 048695 805 QLPD-----------GPFVWDRLATERSLSYER--IDKDILILSTMCVLFASLAF 846 (846)
Q Consensus 805 ~~~~-----------g~~v~~~~~~~~~~~~~~--~~~~~~~l~~~~v~f~~l~~ 846 (846)
+|.+ ....++.+++.+|+..++ .|+|+++|++|+++|+++++
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~ 782 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFT 782 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHH
Confidence 4422 112477888999998775 59999999999999999864
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-54 Score=517.62 Aligned_cols=400 Identities=22% Similarity=0.302 Sum_probs=351.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC---------eEEEEEeccCcCCCC-CH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV---------LLLCYVEKLDAHQTY-SV 504 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G---------~~igyv~Q~~~~~~~-TV 504 (846)
+..+|+|+|+.++||+++.++||.||||||||++|+|.++ .+|+|.+|| +.++|+.|+|.|+|. ||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4689999999999999999999999999999999999875 678999999 679999999999999 99
Q ss_pred HHHHHHHHhhhcCCC----CCHHHHHH-HHHHHHHHcCCCcccccccCCc-----cC-------------CCCcEEEEeC
Q 048695 505 SESIQFSAALRVGKT----VNAMRRHI-HVELVLNQLGLLPYSNQLVGSL-----HY-------------HCPSILLLEE 561 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~----~~~~~~~~-~v~~~l~~l~L~~~~~~~v~~l-----Sg-------------~~P~iLlLDE 561 (846)
+|+|.|+++++.+.. .+++++.+ ..|.+++.+||++++|+++|+- || .+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33344333 5778999999999999999874 44 8999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhCCCCCC
Q 048695 562 PLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLIPKNPR 639 (846)
Q Consensus 562 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~~~~~~ 639 (846)
+|.|||+.++.++++.||++++..+.|.++ +|++++++++||+|++|. +|+++|+||. +++++||++.| +.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~-eG~~iy~Gp~----d~~~~yFe~~G--f~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS-EGYQIYQGPR----DEVLPYFEDMG--FK 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee-ccceEEeccH----HHHHHHHHhcC--cc
Confidence 999999999999999999998778889888 999999999999999999 9999999998 78999999987 78
Q ss_pred CCCCCCcccceeeeccCCCcCC----C-------------------C------------------------------C--
Q 048695 640 YSKRESPVRYITGAVGLGITKW----G-------------------T------------------------------P-- 664 (846)
Q Consensus 640 ~~~~~npa~~~l~~~~~~~~~~----~-------------------~------------------------------~-- 664 (846)
||+++++|||+.++++.....+ + + +
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 9999999999999987321100 0 0 0
Q ss_pred -------------cccChHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 048695 665 -------------SLKNVQYTNGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGVISANN------VIS 725 (846)
Q Consensus 665 -------------~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~------~~~ 725 (846)
..||..|...++.+.+++|+++|++|++.+.++..+.+.|.+++|+++++..+.++.+ -.|
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~p 519 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLP 519 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcc
Confidence 5788888999999999999999999999984467789999999999988877765443 358
Q ss_pred HHhhccc-----------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 048695 726 QIGTDRI-----------------------------------------CSEFMRYWTVVFLFTLCITYFGMMVTFLAPLP 764 (846)
Q Consensus 726 ~~~~~r~-----------------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~ 764 (846)
++.++|. +++||.|++++++...+++++.+++++++++.
T Consensus 520 v~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~ 599 (1391)
T KOG0065|consen 520 VFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTL 599 (1391)
T ss_pred hHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 8888887 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCc---------ccCCC--------------------Cc----
Q 048695 765 TLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAK---------PQLPD--------------------GP---- 810 (846)
Q Consensus 765 ~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~---------~~~~~--------------------g~---- 810 (846)
..|+.++++.+++..+++||+||.++| +||+|++|+||. ++|++ .|
T Consensus 600 ~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~ 679 (1391)
T KOG0065|consen 600 SIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATG 679 (1391)
T ss_pred HHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhc
Confidence 999999999999999999999999999 999999999997 33333 01
Q ss_pred --------cHHHHhhhccCCCCCccchhhHHHHHHHHHHHHHh
Q 048695 811 --------FVWDRLATERSLSYERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 811 --------~v~~~~~~~~~~~~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
..++++...|+|++.+.|+|+++++||.++|.++.
T Consensus 680 ~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~ 722 (1391)
T KOG0065|consen 680 ATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVF 722 (1391)
T ss_pred cccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHH
Confidence 02557888888999999999999999999998763
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-44 Score=353.92 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=181.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ +..+|+|||+++++||+++|+||||||||||||||.|+.+ ++|+|.++|
T Consensus 2 mi~i~~l~K-~fg-----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSK-SFG-----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeE-EeC-----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 689999999 887 7899999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+++|+|+|+..+||+ ||.||+..+...- .+.++++.+++..++|+++||.+.+|.++.+||| .
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 468999999999999 9999999976532 2678899999999999999999999999999999 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|+++|+|||||+|||+...++++.++++ +++|.|.+| ||++..+.+.+|||++|+ +|+++..|++++
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~L-A~eGmTMivVTHEM~FAr~VadrviFmd-~G~iie~g~p~~ 222 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMIIVTHEMGFAREVADRVIFMD-QGKIIEEGPPEE 222 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHH-HHcCCeEEEEechhHHHHHhhheEEEee-CCEEEEecCHHH
Confidence 99999999999999999999999999999 889999999 999999999999999999 999999998753
No 11
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-40 Score=421.79 Aligned_cols=425 Identities=16% Similarity=0.112 Sum_probs=289.0
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 048695 161 AGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVG 240 (846)
Q Consensus 161 ~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A 240 (846)
.++|+++-++..+.+.++.+++.+++.. .|-.... +.+++.|+ +++++.++.+++.+++++++.+...|
T Consensus 693 ~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~--s~~~~lfl-------~~~~y~~s~I~~~fliS~fFska~~A 761 (2272)
T TIGR01257 693 NAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHY--SDPFILFL-------FLLAFSTATIMQCFLLSTFFSKASLA 761 (2272)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeec--CChHHHHH-------HHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 4556666665554444443433333221 2211111 34555555 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccc-CCCCCCCcceehhh-hChHHHHHHHhhhhhcC--C---CCCCCCcccccccccccCCCCC
Q 048695 241 NGLAGLLVSIFLHLSGFAI-YPSNDPIYWKWLIY-ANPIYWANILYCKCQFN--E---GYTDPCTNFLSVTNSQQIAKRP 313 (846)
Q Consensus 241 ~~~~~l~~~~~~l~~Gf~I-~~~~ip~w~~Wi~~-inP~~ya~~al~~nef~--~---~~~~~C~~~~g~~~~~~~~~~~ 313 (846)
..+++++..++++...+.. -.+.++...+|+.. ++|.++++.......++ + .|.+.-. .+...+.-..
T Consensus 762 ~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~-----~~~~~d~~s~ 836 (2272)
T TIGR01257 762 AACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGN-----SPLEGDEFSF 836 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCcccccccc-----cccCCCCccH
Confidence 9999998887766543322 34566666666644 78999887543333222 1 1221000 0000000011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccccCCcc-cccccccccCCCCCCCCCCCCCCCCCccccc
Q 048695 314 WLPYAILLGWTVLANFLALLGRRNIEFTGASQSLPHLRKTSIIHSSKD-YSHSKFQSSCSSGSYNSEDLSGYSVPQKLYS 392 (846)
Q Consensus 314 w~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (846)
-..+++++...++|.+++++....++.+.|....+.|.-.+..|..+. ...... ..... .+.. ..+...+....
T Consensus 837 ~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~-~~~~~-~~~~--~~~~~~~~~~~- 911 (2272)
T TIGR01257 837 LLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREE-RALEK-TEPL--TEEMEDPEHPE- 911 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCcccccccc-ccccc-cccc--ccccccccccc-
Confidence 223557777888888888888888888777665555443222121110 000000 00000 0000 00000000000
Q ss_pred CCCCCcccccchhhhhccCCCCCCCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHH
Q 048695 393 GYNHMNEGIKEFYIDVEMNGKGIPVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQC 472 (846)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~ 472 (846)
... + . ..+ ...+.....++++||++ .|++ +++.+|+|+|+++++||+++|+||||||||||||+
T Consensus 912 ~~~--~-----~--~~E---~~~~~~~~~L~I~nLsK-~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLki 975 (2272)
T TIGR01257 912 GIN--D-----S--FFE---RELPGLVPGVCVKNLVK-IFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSI 975 (2272)
T ss_pred ccc--c-----c--ccc---cccCCCCceEEEEeEEE-EecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHH
Confidence 000 0 0 000 00112335799999999 7742 14679999999999999999999999999999999
Q ss_pred HcCCc-cccceEEEcC-----------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC
Q 048695 473 LAERI-PFTGSLNGNV-----------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL 539 (846)
Q Consensus 473 LaG~~-~~~G~I~~~G-----------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 539 (846)
|+|+. |++|+|.++| +.+|||+|++.+++. ||+|++.+.++++ +.+.++.+++++++|+.+||+
T Consensus 976 LaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257 976 LTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLH 1052 (2272)
T ss_pred HhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCc
Confidence 99997 5999999999 358999999999999 9999999988765 344555667899999999999
Q ss_pred cccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEE
Q 048695 540 PYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLA 605 (846)
Q Consensus 540 ~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~v 605 (846)
+.+++++++||| .+|++|+|||||+|||+.+++.++++|+++ + +|+|||+ ||+++++..++||+
T Consensus 1053 ~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~-~g~TIIltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R-SGRTIIMSTHHMDEADLLGDRI 1130 (2272)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEECCHHHHHHhCCEE
Confidence 999999999998 999999999999999999999999999999 5 4899999 99999999999999
Q ss_pred EEEccCCEEEEecCCCCChHHHHHHHh
Q 048695 606 LILTKEGHQAYFGPRGSNHDIILDYFL 632 (846)
Q Consensus 606 llL~~~G~~v~~G~~~~~~~~l~~~f~ 632 (846)
++|+ +|++++.|++ ..+++-|.
T Consensus 1131 ~iL~-~GkL~~~Gs~----~~Lk~~~g 1152 (2272)
T TIGR01257 1131 AIIS-QGRLYCSGTP----LFLKNCFG 1152 (2272)
T ss_pred EEEE-CCEEEEecCH----HHHHHhcC
Confidence 9999 9999999987 56665554
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-42 Score=349.43 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=183.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
|++++||++ .|+ ++.+++|+|++|++||+++++|||||||||+||+|.++. |++|+|++||
T Consensus 1 MI~~~nvsk-~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSK-RYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred Cceeeeeeh-hcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 589999999 887 789999999999999999999999999999999999997 5999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCccC-------------
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP--YSNQLVGSLHY------------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~v~~lSg------------- 551 (846)
|.||||-|+..+||+ ||.||+.+-..+. ++++++.+++++|+|+++||++ ++++++.+|||
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 789999999999999 9999999988876 7889999999999999999974 89999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++|+|||||||+++|||.++.++-+.+++++++.|+|||+ |||++|+++++|||.+|+ +|+++..++|++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~-~G~i~Q~~~P~~ 222 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTPDE 222 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999999999999999998888999999 999999999999999999 999999999865
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-41 Score=353.19 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=186.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++ .+|+|+++|
T Consensus 2 ~L~~~~ls~-~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSF-GYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEE-EEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 689999999 887 7899999999999999999999999999999999999875 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKT-VNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+|||||....... ||+|.+.++..-++... ...++.++.++++|+.+|+.+++++.+.+||| +
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 689999999876666 99999999865443321 22345556899999999999999999999999 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILD 629 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~ 629 (846)
+|++||||||||.||...+.+++++++++++++|+|||+ .||++.+.++||++++|+ +|+++..|+|.+ +.+.+.+
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk-~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK-DGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeEEeecCcchhcCHHHHHH
Confidence 999999999999999999999999999996688999999 999999999999999999 999999999987 6677888
Q ss_pred HHhhC
Q 048695 630 YFLLI 634 (846)
Q Consensus 630 ~f~~~ 634 (846)
.|.-.
T Consensus 235 Vygv~ 239 (258)
T COG1120 235 VYGVD 239 (258)
T ss_pred HhCCc
Confidence 88753
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=352.21 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=185.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
|++++||++ .|....++...+|+|||++|++||+.+|+|.||||||||+|+|.++. |++|+|.++|
T Consensus 1 mI~l~~vsK-~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSK-TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeee-eeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 589999999 77643223457999999999999999999999999999999999997 6999999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
++||+++|+..++.. ||.||+.|..++. +.++++++++|.++|+.+||++.+++++.+|||
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 689999999999998 9999999999887 688999999999999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+|||+|||||+|||++.+.|+++|+++.++.|.||++ ||.++.+.++|||+.+|+ +|+++..|++.+
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~-~G~lvE~G~v~~ 228 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLVEEGTVSE 228 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee-CCEEEEeccHHH
Confidence 9999999999999999999999999999998888999999 999999999999999999 999999999876
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.5e-41 Score=338.99 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=190.9
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------- 487 (846)
...+++++|++ .|+ ++.|++|||++|++||+++||||||+|||||||+|.|++ |++|+|.++|
T Consensus 6 ~~~I~vr~v~~-~fG-----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTK-SFG-----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeee-ecC-----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 34799999999 787 799999999999999999999999999999999999998 5999999999
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC---------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY--------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg--------- 551 (846)
+++|+++|+-.+|.. ||+||+.|..+-+ .+.+++..++.+..-|+.+||... ++..+.+|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 679999999999999 9999999976544 467888899999999999999987 9999999999
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC----
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS---- 622 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~---- 622 (846)
.+|+|||+|||||||||.++..+-++++++.+.-|.|+++ |||.++++..|||+++|. +||++..|++++
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~-~gkv~~~Gt~~el~~s 236 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLA-DGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEe-CCEEEEeCCHHHHHhC
Confidence 8999999999999999999999999999997777999999 999999999999999999 999999999976
Q ss_pred ChHHHHHHHhhCC
Q 048695 623 NHDIILDYFLLIP 635 (846)
Q Consensus 623 ~~~~l~~~f~~~~ 635 (846)
+..-+.+||....
T Consensus 237 d~P~v~qf~~G~~ 249 (263)
T COG1127 237 DDPWVRQFFNGIR 249 (263)
T ss_pred CCHHHHHHhcCCC
Confidence 3355677887653
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-40 Score=342.04 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=177.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC---------eE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------LL 489 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------~~ 489 (846)
.+++++|+++ .|+ ++++|+|||+++++|++++|+||||||||||+|+|.|++ |.+|+|.++| .+
T Consensus 3 ~~i~v~nl~v-~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTV-SYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEE-EEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 4799999999 886 337999999999999999999999999999999999976 5999999998 37
Q ss_pred EEEEeccC---cCCCCCHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 490 LCYVEKLD---AHQTYSVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 490 igyv~Q~~---~~~~~TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
||||||.. .-+|.||+|.+..+...+.+. +...++.+++++++|+++||.+++|+.+++||| +
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 99999964 345569999999885444321 112334478999999999999999999999999 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILD 629 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~ 629 (846)
+|++|+|||||+|+|+.++..++++|+++ +++|+||++ |||+..+.++||++++|+ +++++.|++++ ..+++..
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l-~~eg~tIl~vtHDL~~v~~~~D~vi~Ln--~~~~~~G~~~~~~~~~~l~~ 233 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDLGLVMAYFDRVICLN--RHLIASGPPEEVLTEENLEK 233 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCcHHhHhhCCEEEEEc--CeeEeccChhhccCHHHHHH
Confidence 99999999999999999999999999999 666999999 999999999999999997 78999999987 3455666
Q ss_pred HHhh
Q 048695 630 YFLL 633 (846)
Q Consensus 630 ~f~~ 633 (846)
.|..
T Consensus 234 ~~g~ 237 (254)
T COG1121 234 AFGG 237 (254)
T ss_pred HhCc
Confidence 6653
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.6e-40 Score=356.15 Aligned_cols=199 Identities=25% Similarity=0.304 Sum_probs=180.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~ 488 (846)
.++++||++ .|++ ++.+|+|||+++++||++||+||||||||||||+|+|+. |++|+|.++| +
T Consensus 4 ~i~~~~l~k-~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTK-KYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEE-EeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 588999999 7861 378999999999999999999999999999999999998 5999999999 4
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
++||++|++.+++. ||+|+|.|.+.++.+ ++++.+++++++++.+||.+.++++++++|+ .+|
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence 69999999999999 999999999999843 3356677999999999999978899999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC-cEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHh
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSG-HYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFL 632 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g-~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~ 632 (846)
++|||||||+||||.++.+++++|+++ +++| +||++ ||.++++..+||+|++|+ +|++++.|++ +++...+.
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l-~~~g~~tvlissH~l~e~~~~~d~v~il~-~G~~~~~g~~----~~l~~~~~ 229 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLREL-AKEGGVTILLSTHILEEAEELCDRVIILN-DGKIIAEGTP----EELKEKFG 229 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHH-HhCCCcEEEEeCCcHHHHHHhCCEEEEEe-CCEEEEeCCH----HHHHHhhc
Confidence 999999999999999999999999999 5555 89999 999999999999999999 9999999977 45555544
Q ss_pred h
Q 048695 633 L 633 (846)
Q Consensus 633 ~ 633 (846)
.
T Consensus 230 ~ 230 (293)
T COG1131 230 G 230 (293)
T ss_pred c
Confidence 3
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-41 Score=327.90 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=180.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~ 488 (846)
|++++++++ +|+. ..++++||||+++.||+++|+|||||||||+||+|++++ |++|+|+++| +
T Consensus 1 Ml~v~~l~K-~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTK-SYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred Ceeeeehhh-hccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 578999999 7862 345999999999999999999999999999999999997 7999999999 7
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
+||.++.+..++.. |++|||.|.+++. +++..+.+++++++.+.|+|.+++|++++++|. ++|
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 89999977788888 9999999999998 778888999999999999999999999999996 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++++|||||||||..+++.+.+.++++ ++.|++||+ ||.++|+..+|||+++|+ +|++++.|+++.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~-k~egr~viFSSH~m~EvealCDrvivlh-~Gevv~~gs~~~ 219 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQL-KNEGRAVIFSSHIMQEVEALCDRVIVLH-KGEVVLEGSIEA 219 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHh-hcCCcEEEEecccHHHHHHhhheEEEEe-cCcEEEcCCHHH
Confidence 999999999999999999999999999 888999999 999999999999999999 999999999854
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=338.01 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=173.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-------eEEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-------LLLCY 492 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-------~~igy 492 (846)
.++++++++ .|+ +..+|+|||+++++||+++|+||||||||||||+|+|+. |++|+|.++| ..+||
T Consensus 3 ~l~i~~v~~-~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSK-SFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEE-EeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 689999999 787 589999999999999999999999999999999999998 5999999999 58999
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
|+|++.++|. ||+||+.++...+ +.++++.++++++.|+.+||.+..|+++.+||| .+|+||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred EeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999 9999999998876 467788888999999999999999999999999 9999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC--CEE
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE--GHQ 614 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~--G~~ 614 (846)
||||+++||+.++..+.+.|.++.++.++||++ |||.+|+..++|||++|. + |++
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~-~~P~~i 211 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS-NRPGRI 211 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEec-CCCcce
Confidence 999999999999999999999998888999999 999999999999999999 6 444
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-40 Score=355.33 Aligned_cols=192 Identities=21% Similarity=0.204 Sum_probs=183.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ +..+|+|||+++++||+++|+||||||||||||+|||+.+ ++|+|.++| |.
T Consensus 3 ~i~l~~v~K-~yg-----~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRK-SFG-----SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEE-EcC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 699999999 887 2239999999999999999999999999999999999985 999999999 89
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|+|+|+..++|+ ||+||+.|+.+.+ +.++++.+++|+++.+.|+|+++.|+++.+||| .+|+
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 9999999999999 9999999999887 778999999999999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++|||||.|+||++.+.++...|++++++.|.|+|. |||..|+..++||+++|+ +|++...|+|.+
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe-CCeeeecCChHH
Confidence 999999999999999999999999997778999999 999999999999999999 999999999965
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=330.06 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=185.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
++|+++||++ .|+ +++++|+|||+++++||++||+||||||||||||+|+|+.+ ++|+|.+||
T Consensus 2 ~~i~~~nl~k-~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSK-TYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeee-ecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 4799999999 884 27899999999999999999999999999999999999985 999999999
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCccC------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-----TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------ 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------ 551 (846)
+++||++|+..+.+. ||.||+..+..-+.+. +...++.+..+-+.|+++|+.+.+.++.++|||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 679999999999999 9999999886544331 233345556788999999999999999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC-
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS- 622 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~- 622 (846)
++|+|+|.|||+++|||.++++||+.|++++++.|.|||+ .|+.+.+.++|||++-|+ +||++|+|++.+
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~-~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK-AGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec-CCcEEEeCChhhh
Confidence 9999999999999999999999999999998889999999 999999999999999999 999999999977
Q ss_pred ChHHHHHHHhh
Q 048695 623 NHDIILDYFLL 633 (846)
Q Consensus 623 ~~~~l~~~f~~ 633 (846)
+.+.+.+.|..
T Consensus 236 ~~~~~~~iYg~ 246 (258)
T COG3638 236 TDEALDEIYGN 246 (258)
T ss_pred hHHHHHHHhcc
Confidence 33445555553
No 22
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-40 Score=358.06 Aligned_cols=194 Identities=21% Similarity=0.222 Sum_probs=183.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------e
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------L 488 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------~ 488 (846)
..++++||++ .|+ +..+|+|||+++++||+++|+||||||||||||+|||+. |++|+|.++| |
T Consensus 4 ~~l~i~~v~k-~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSK-SFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeee-ecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 4799999999 887 689999999999999999999999999999999999998 5999999999 8
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+|+|+|+..+||+ ||+||+.|+.+++ ....+++.+++|+++|+.++|++++++++.+||| .+|
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 89999999999999 9999999998854 2345677889999999999999999999999999 899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++||||||.|+||..-+.++...|++++++.|.|.|+ |||-+|+..++|||.+|+ +|++...|+|++
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~-~G~I~Q~gtP~e 223 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN-DGRIEQVGTPEE 223 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc-CCceeecCCHHH
Confidence 9999999999999999999999999998889999999 999999999999999999 999999999976
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=339.46 Aligned_cols=195 Identities=21% Similarity=0.251 Sum_probs=181.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
++++++|+++ .++ ...+++|||++|+.||++||+|||||||||||++|||++ |++|.|.+||
T Consensus 1 m~i~i~~~~~-~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 1 MSIRINNVKK-RFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred Cceeehhhhh-hcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch
Confidence 3688999999 776 678999999999999999999999999999999999998 5999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
|+||||+|+..+|++ ||.||+.|+.+.+ ....++.+.+.+++++|+.+.|++.+++++.+|||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 789999999999999 9999999999876 22345678889999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++||||||+++||+.-+.++.+.|+++..+.|.|.++ |||.+|+.++||||++|+ +|+|...|++++
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~-~G~Ieqvg~p~e 224 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN-QGRIEQVGPPDE 224 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec-CCeeeeeCCHHH
Confidence 8999999999999999999999999999996666999999 999999999999999999 999999999865
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-38 Score=345.95 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=177.1
Q ss_pred CCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC--------
Q 048695 417 VEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-------- 487 (846)
Q Consensus 417 ~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-------- 487 (846)
.+..+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+. |++|+|.++|
T Consensus 3 ~~~~~i~i~~l~k-~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 3 MSVAPIDFRNVEK-RYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred CCCceEEEEeEEE-EEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH
Confidence 3445899999999 786 578999999999999999999999999999999999997 5999999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+|||+|++.+++. ||+||+.+.+.++ +.+.++..++++++++.++|.+.+++++++||+
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 469999999999998 9999999877654 344555667889999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+++++.++|||+++|+ +|++++.|++
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l-~~~g~till~sH~l~e~~~~~d~i~il~-~G~i~~~g~~ 222 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVIE-EGRKIAEGAP 222 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999 677999999 999999999999999999 9999999987
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=323.75 Aligned_cols=198 Identities=18% Similarity=0.295 Sum_probs=188.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------eEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------LLLC 491 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------~~ig 491 (846)
++++++|++ +|+ ++.+++|+|+.++||++.+++|||||||||.+|+|.|+++ ++|+|.++| .+||
T Consensus 2 ~L~ie~vtK-~Fg-----~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTK-SFG-----DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75 (300)
T ss_pred ceEEecchh-ccC-----ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc
Confidence 689999999 887 7899999999999999999999999999999999999985 999999999 6899
Q ss_pred EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEE
Q 048695 492 YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSIL 557 (846)
Q Consensus 492 yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iL 557 (846)
|.|.+..+++. ||.|.|.|.|.|+ ++++++.+.+++.+|+++++.....+++.+||. ++|+++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99999999999 9999999999998 899999999999999999999999999999986 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
+||||+|||||.+.+.+-+.+.++ ++.|.|||+ +|.++.+.++||++++|+ +|+.|.+|+. +++..-|..
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~l-k~~GatIifSsH~Me~vEeLCD~llmL~-kG~~V~~G~v----~~ir~~~Gk 223 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFEL-KEEGATIIFSSHRMEHVEELCDRLLMLK-KGQTVLYGTV----EDIRRSFGK 223 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHH-HhcCCEEEEecchHHHHHHHhhhhheec-CCceEEeccH----HHHHHhcCC
Confidence 999999999999999999999999 899999999 999999999999999999 9999999998 566665544
No 26
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-37 Score=395.41 Aligned_cols=428 Identities=17% Similarity=0.129 Sum_probs=277.6
Q ss_pred HHHHHHHHHhhccceeeeec---ccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhc--cCccccccCCCceee
Q 048695 131 ESSNHVNLTLHDALESHKQK---MIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFL--AGLSLVQNGAPFFQY 205 (846)
Q Consensus 131 ~~~~~l~~~~~~r~i~~k~~---~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm--~Gl~~~~~~~~Ff~f 205 (846)
.+++-+|..+..-+|-.|+. .-|...|. ++.+|+++.++.|+...++.++++.++++.. -++.. ...+...
T Consensus 1688 ~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~---~~~l~~~ 1763 (2272)
T TIGR01257 1688 FAMSFVPASFVLYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTS---PENLPAL 1763 (2272)
T ss_pred HHHHHHHHHHheeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcC---cchHHHH
Confidence 34445555555555544442 01112222 6899999999999999888877776555422 12221 1233333
Q ss_pred ehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH---HHhhcccc----CCC---CCCCcceehhhhC
Q 048695 206 LVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIF---LHLSGFAI----YPS---NDPIYWKWLIYAN 275 (846)
Q Consensus 206 ~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~---~l~~Gf~I----~~~---~ip~w~~Wi~~in 275 (846)
++ ++++++++.+-+..+++-++++...|.....++.++. .+...+++ +.. .+...++|+..+.
T Consensus 1764 ~l-------ll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~ 1836 (2272)
T TIGR01257 1764 VA-------LLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVF 1836 (2272)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeC
Confidence 34 7888899999999999999999998876544322211 11112221 111 1224567777766
Q ss_pred hHHHHHH-HhhhhhcC-CCCCCCCcccccccccccCCCCCh----HHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccc
Q 048695 276 PIYWANI-LYCKCQFN-EGYTDPCTNFLSVTNSQQIAKRPW----LPYAILLGWTVLANFLALLGRRNIEFTGASQSLPH 349 (846)
Q Consensus 276 P~~ya~~-al~~nef~-~~~~~~C~~~~g~~~~~~~~~~~w----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (846)
|. |++. ++. +-.. ....+.|... +.. .....+.| .++.++++..++|+++.++ +++... ... .
T Consensus 1837 P~-f~lg~gl~-~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~g~~ll~m~~~~iv~flLl~~-ie~~~~---~~~--~ 1905 (2272)
T TIGR01257 1837 PH-FCLGRGLI-DLALSQAVTDVYAQF-GEE--HSANPFQWDLIGKNLVAMAVEGVVYFLLTLL-IQHHFF---LSR--W 1905 (2272)
T ss_pred ch-hhhHHHHH-HHHHhHHHHHHHHhh-ccc--ccCCccchhhccHHHHHHHHHHHHHHHHHHH-HHhhhh---hhh--h
Confidence 63 3432 221 1100 0001112100 000 00111233 2344444444444433332 222100 000 0
Q ss_pred ccccccccCCcccccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcccccchhhhhccCCCCCCCCceEEEEeceee
Q 048695 350 LRKTSIIHSSKDYSHSKFQSSCSSGSYNSEDLSGYSVPQKLYSGYNHMNEGIKEFYIDVEMNGKGIPVEPVTFVFEGLTF 429 (846)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 429 (846)
... +. +. ..++ + +++ . ..|+.++.. ......+++++||++
T Consensus 1906 ~~~-~~----~~-~~~~---------e-D~D-------------V-----~~Er~rV~~------~~~~~~~L~v~nLsK 1945 (2272)
T TIGR01257 1906 IAE-PA----KE-PIFD---------E-DDD-------------V-----AEERQRIIS------GGNKTDILRLNELTK 1945 (2272)
T ss_pred ccc-cC----cC-cCCC---------c-hhH-------------H-----HHHHHHHhc------cCCCCceEEEEEEEE
Confidence 000 00 00 0000 0 000 0 001111110 011233799999999
Q ss_pred eeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------eEEEEEeccC
Q 048695 430 SRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------LLLCYVEKLD 497 (846)
Q Consensus 430 ~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~~igyv~Q~~ 497 (846)
.|++ +++.+|+|||+.+++||++||+||||||||||+|+|+|+. |++|+|.++| +.+|||+|++
T Consensus 1946 -~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~ 2021 (2272)
T TIGR01257 1946 -VYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021 (2272)
T ss_pred -EECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccc
Confidence 7852 1367999999999999999999999999999999999997 5999999999 3599999999
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
.+++. ||+|++.+.++++ +.++++.+++++++|+.+||++.+|+++++||| .+|+||||||||
T Consensus 2022 ~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPT 2098 (2272)
T TIGR01257 2022 AIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098 (2272)
T ss_pred cCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999 9999999988776 455556667889999999999999999999998 899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
+|||+.+++.+++.|+++ +++|+|||+ ||+++++..+|||+++|+ +|++++.|++ +++.+.|..
T Consensus 2099 sGLDp~sr~~l~~lL~~l-~~~g~TIILtTH~mee~e~lcDrV~IL~-~G~i~~~Gs~----q~Lk~~~g~ 2163 (2272)
T TIGR01257 2099 TGMDPQARRMLWNTIVSI-IREGRAVVLTSHSMEECEALCTRLAIMV-KGAFQCLGTI----QHLKSKFGD 2163 (2272)
T ss_pred CCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCH----HHHHHHhCC
Confidence 999999999999999999 667999999 999999999999999999 9999999998 667666653
No 27
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-38 Score=323.05 Aligned_cols=187 Identities=20% Similarity=0.216 Sum_probs=166.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
+++++||++ .|+.+.. ...+|++||+++++||++||||||||||||||++|+|+. |++|+|.++|
T Consensus 1 ~i~~~~v~k-~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSK-IYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEE-EeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367899999 7753322 268999999999999999999999999999999999997 6999999999
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCccC----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN-QLVGSLHY---------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~v~~lSg---------- 551 (846)
+.+|||+|+..+.|. ||+||+.+.+.+. +.+..+.+++++++++.+||.+..+ +++.+|||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 579999999999999 9999999987665 3444466778999999999997776 88999999
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++||.||||.+||+.++.+|++++++++++.|+|||+ |||.. +...|||++.|+ +|++
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-lA~~~dr~i~l~-dG~~ 220 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE-LAKYADRVIELK-DGKI 220 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHhCCEEEEEe-CCee
Confidence 9999999999999999999999999999996677999999 99985 456899999999 9984
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-38 Score=308.03 Aligned_cols=190 Identities=20% Similarity=0.166 Sum_probs=179.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
|++++||++ .|+. ++.+|+|||+++++||++-|+||||||||||||+|.+.. |++|+|.+||
T Consensus 1 mI~f~~V~k-~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSK-AYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred Ceeehhhhh-hcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 588999999 8863 477999999999999999999999999999999999986 6999999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
|+||+|+||..+.+. ||.||+.|..+.. +.++++.+++|.++|+.+||.+.++..+.+|||
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 789999999999999 9999999998876 678889999999999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+.||||-+|||..+++|++++.++ ...|.||++ |||.+.+..+-.|++.|+ +|+++.....
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeei-nr~GtTVl~ATHd~~lv~~~~~rvl~l~-~Grl~~d~~~ 221 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVLMATHDLELVNRMRHRVLALE-DGRLVRDESR 221 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHH-hhcCcEEEEEeccHHHHHhccCcEEEEe-CCEEEecccc
Confidence 999999999999999999999999999999 889999999 999999999999999999 9999876543
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=344.91 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=177.3
Q ss_pred EEEEeceeeeee-ccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------e
Q 048695 421 TFVFEGLTFSRY-EEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~-~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~ 488 (846)
+|+++||++ .| + ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +
T Consensus 3 ~l~i~~l~~-~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r 76 (356)
T PRK11650 3 GLKLQAVRK-SYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADR 76 (356)
T ss_pred EEEEEeEEE-EeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 699999999 77 4 5679999999999999999999999999999999999975 999999999 5
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+|||+|++.++|+ ||+||+.|+.+.+ +.++++.+++++++++.+||++..++++++||| .+|
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999999999 9999999987654 345667778899999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++||||||||+||+.++..+.+.|+++.++.|.|+|+ ||+.+++.+++|++++|+ +|+++..|++++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~-~G~i~~~g~~~~ 221 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN-GGVAEQIGTPVE 221 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEEECCHHH
Confidence 9999999999999999999999999995556999999 999999999999999999 999999999853
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.2e-37 Score=344.17 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=178.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| |.
T Consensus 4 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRK-RFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEE-EeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 699999999 786 5679999999999999999999999999999999999985 999999999 57
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..++|+ ||+||+.|+.+.+ +.++++.+++++++++.+||++..++.+.+||| .+|+
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999 9999999987654 455677788999999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||||||+.++.++.+.|+++.++.|.|+|+ ||+.+++..++||+++|+ +|+++..|++++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~-~G~i~~~g~~~~ 221 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN-HGVIEQVGTPQE 221 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999999999999995556999999 999999999999999999 999999999853
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.3e-37 Score=341.06 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=175.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------- 487 (846)
..+++++||++ .|+ ++.+|+|||+++++||++||+||||||||||+++|+|++ |++|+|.++|
T Consensus 39 ~~~i~i~nl~k-~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSK-SYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 45799999999 786 568999999999999999999999999999999999997 5999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+||++|+..+++. ||+||+.+.+.++ +.+..+..++++++++.++|.+..++++++||+ .
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 469999999999888 9999999876554 234455566788999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|++|+|||||+|||+.++..++++|+++ ++.|+|||+ ||+++++.++|||+++|+ +|++++.|++
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l-~~~g~tilisSH~l~e~~~~~d~i~il~-~G~i~~~g~~ 256 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLE-AGRKIAEGRP 256 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999999999999 667999999 999999999999999999 9999999987
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=342.17 Aligned_cols=192 Identities=20% Similarity=0.242 Sum_probs=178.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+|+++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +.
T Consensus 6 ~l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 6 FVVLKNITK-RFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred EEEEEeEEE-EEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 799999999 786 5679999999999999999999999999999999999985 999999999 67
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..++|+ ||+||+.|+.+.+ +.++++.+++++++++.+||.+++++++.+||| .+|+
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999999997654 455677778999999999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||||||+.++.++.+.|+++.++.|+|+|+ |||.+++.+++||+++|+ +|+++..|++++
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~-~G~i~~~g~~~~ 223 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN-KGKIMQIGSPQE 223 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999999999999995556999999 999999999999999999 999999998853
No 33
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.3e-37 Score=340.65 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=176.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
||+++||++ .|+.+ ++.+.+|+|||+++++||+++|+||||||||||+|+|+|+.+ ++|+|.++|
T Consensus 1 mI~~~~lsk-~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITK-VFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEE-EECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 489999999 78521 123579999999999999999999999999999999999985 999999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+||++|+..+++. ||+||+.+....+ +.++++.++++.++++.+||.+.+|+++++|||
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 269999999999998 9999999976543 345667778899999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||||||+.++..++++|++++++.|.|||+ ||+++++.++||++++|+ +|+++..|++.+
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~-~G~iv~~g~~~~ 227 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQGTVSE 227 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 9999999999999999999999999999995556999999 999999999999999999 999999998743
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=320.12 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=175.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
.+++++|+++ .|++ ++.+|+|+|+++++||.++|+|+||||||||+++|+|++ |.+|+|.++|
T Consensus 2 ~~i~~~~l~~-~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSF-RYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEE-EcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 3689999999 7752 268999999999999999999999999999999999998 4999999998
Q ss_pred --eEEEEEeccCcCCC-C-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDAHQT-Y-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~-~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+++|||+|++..+- . ||.|.+.|+.... +.++++.+++++++++.+||.+++++.+.+|||
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 46999999975433 3 9999999998765 677888999999999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||||||+.++.++++.++++..+.|+|+|+ |||.+.+..++||+++|+ +|+++++|++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~-~G~i~~~g~p 223 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD-DGKILADGDP 223 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEE-CCEEeecCCH
Confidence 9999999999999999999999999999994444799999 999999999999999999 9999999987
No 35
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.6e-37 Score=341.62 Aligned_cols=194 Identities=19% Similarity=0.174 Sum_probs=178.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+.+|+++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 12 ~~~L~l~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 12 SPLVELRGISK-SFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred CceEEEEEEEE-EEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 34799999999 786 4679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
+.+|||+|++.++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++..++++.+||| .+
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 569999999999999 9999999987644 345666677899999999999999999999998 89
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|++|||||||||||+..+..+.+.|++++++.|.|+|+ |||.+++..++||+++|+ +|+++..|++.+
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~ 231 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR-DGRIEQDGTPRE 231 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 99999999999999999999999999995556999999 999999999999999999 999999998743
No 36
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.7e-37 Score=339.53 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=176.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-cc--ceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FT--GSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~--G~I~~~G---------- 487 (846)
.++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++ |+|.++|
T Consensus 5 ~l~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRV-AYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEE-EEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHH
Confidence 489999999 786 4679999999999999999999999999999999999985 88 9999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
+.+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++..++++++||| .+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 569999999999999 9999999987654 456667778899999999999999999999998 99
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|++|||||||||||+..+.++.+.|++++++. |.|+|+ |||.+++..++||+++|+ +|+++..|++++
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~-~G~i~~~g~~~~ 225 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK-DGRLAAHGEPQA 225 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 99999999999999999999999999994443 899999 999999999999999999 999999999854
No 37
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=340.19 Aligned_cols=195 Identities=18% Similarity=0.174 Sum_probs=178.9
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------- 487 (846)
+..+|+++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 16 ~~~~l~l~~v~~-~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 16 LTPLLEIRNLTK-SFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CCceEEEEeEEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 345799999999 775 4679999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
|.+|||+|++.++|+ ||+||+.|+.+.+ +.++++.+++++++++.++|.+..++.+.+||| .
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 569999999999999 9999999987654 345677778899999999999999999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|||||||||||+..+..+.+.|+++.++.|.|+|+ |||.+++..++||+++|+ +|+++..|++.+
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~ 236 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN-RGKFVQIGEPEE 236 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe-CCEEEEEcCHHH
Confidence 999999999999999999999999999985667999999 999999999999999999 999999999753
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=338.07 Aligned_cols=195 Identities=18% Similarity=0.196 Sum_probs=176.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 2 ~L~i~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKK-SFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEE-EeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 589999999 786 4679999999999999999999999999999999999985 999999999 46
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
+|||+|++.++|. ||+||+.|+...+.. ...++++.+++++++++.++|.+..++++.+||| .+|
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P 155 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999 999999998654211 1234566677899999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++|||||||+|||+.++..+.+.|++++++.|+|+|+ |||.+++.+++||+++|+ +|++++.|++++
T Consensus 156 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~-~G~i~~~g~~~~ 223 (353)
T PRK10851 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS-QGNIEQAGTPDQ 223 (353)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 9999999999999999999999999995555899999 999999999999999999 999999998743
No 39
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-37 Score=312.39 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=177.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
.+++++||++ +|+ +..+++|||+++++||+++|+||||||||||+|+|+|.+ |++|+|.++|
T Consensus 3 ~lL~v~~l~k-~FG-----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSK-RFG-----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeecccee-ecC-----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 4789999999 887 789999999999999999999999999999999999998 5999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhc--------CC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC----
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRV--------GK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~--------~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---- 551 (846)
..++--+|...+|+. ||.||+..++..+. +. ....++..+++.++|+.+||.+.+|++.++||+
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 457788999999999 99999999866431 11 123466778899999999999999999999997
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||.+||.+..+.++.+.|+++.++.|.||++ .||++.++.+||||++|+ .|+++..|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~-~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN-YGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc-CCcCcccCCHH
Confidence 9999999999999999999999999999994446799999 999999999999999999 99999999997
Q ss_pred C
Q 048695 622 S 622 (846)
Q Consensus 622 ~ 622 (846)
+
T Consensus 236 e 236 (250)
T COG0411 236 E 236 (250)
T ss_pred H
Confidence 5
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-36 Score=316.12 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=169.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++| +.
T Consensus 1 i~~~~~~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVK-KYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEE-EEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 46899999 775 4679999999999999999999999999999999999974 999999998 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||++..++++++||+ .+|+
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999988888 9999999876543 233445566789999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.+||+++|+ +|+++..|++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999994444899999 999999999999999999 9999998876
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-36 Score=318.71 Aligned_cols=190 Identities=18% Similarity=0.199 Sum_probs=169.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTK-SFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 46889999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+|||+|++.+++. ||+||+.+....+. ..++++..++++++++.+||.+..++.+++|||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 138999999988898 99999998754321 234555567889999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~-~G~i~~~g~~ 221 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY-DGKIVAEGTP 221 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE-CCeEEEecCH
Confidence 8999999999999999999999999999994345899999 999999999999999999 9999999876
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.3e-36 Score=329.49 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=172.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
++++++||++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+. |++|+|.++|
T Consensus 3 ~~i~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSK-SYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEE-EeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 4799999999 786 467999999999999999999999999999999999997 4999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
+.+||++|++.+++. ||+||+.+....+ +.+.++..++++++++.++|.+..++++++||+ .+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 369999999988888 9999998765443 234455556788999999999999999999998 99
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
|++|||||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|++++.|++
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~g~til~~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~ 219 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLE-SGRKIAEGRP 219 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999999999999999 667999999 999999999999999999 9999999987
No 43
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=308.46 Aligned_cols=195 Identities=20% Similarity=0.227 Sum_probs=173.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
++++++||++ .|+.++ ...++|+|||+++++||+++|+|+||||||||.++|+|+. |.+|+|.++|
T Consensus 2 ~~l~v~nl~~-~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSI-VYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEE-EecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 4799999999 886321 1226999999999999999999999999999999999998 5999999999
Q ss_pred --eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC----------
Q 048695 488 --LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 --~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg---------- 551 (846)
+.+.+|+||+ .+.|. ||++.|.-+.... +.++.++ ++.++|+.+||. +.+++++.+|||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~~--~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQQ--RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHHH--HHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHH
Confidence 5689999997 57788 9999998876542 4444443 499999999997 478999999999
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+||||||+||+..+.+|+++|.+++++.|.|.|+ +||+..+..+|||+++|+ +|+++..++.++
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~-~G~ivE~~~~~~ 228 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD-NGQIVEIGPTEE 228 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee-CCeEEEeechhh
Confidence 8999999999999999999999999999997788999999 999999999999999999 999999998854
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-36 Score=314.05 Aligned_cols=187 Identities=26% Similarity=0.263 Sum_probs=166.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i 74 (213)
T cd03259 1 LELKGLSK-TYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI 74 (213)
T ss_pred CeeeeeEE-EeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE
Confidence 46889999 775 4679999999999999999999999999999999999975 999999998 258
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||.+..++++++||+ .+|++
T Consensus 75 ~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 75 GMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999888888 9999999875433 233445556789999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999994445899999 999999999999999999 99998765
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.6e-36 Score=328.72 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=173.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
.++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +
T Consensus 2 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTK-LYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEE-EEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 589999999 786 5789999999999999999999999999999999999975 999999999 3
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+||++|++.+++. ||+||+.+.+.++ +.+.++..++++++++.+||++..+++++.||+ .+|
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 69999999999998 9999999887665 344555567889999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++|+|||||+|||+.++..+++.|+++ ++ ++|||+ ||+++++.++|||+++|+ +|++++.|++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~-~~-~~tiii~sH~l~~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNI-GK-DKTIILSTHIMQEVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999 55 799999 999999999999999999 9999999987
No 46
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=301.05 Aligned_cols=214 Identities=18% Similarity=0.191 Sum_probs=183.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
||+.+||++ +.. +|++|++||++++|||++||+||||||||||||.|+|.+ |.+|++.+||
T Consensus 1 mi~a~nls~-~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSY-SLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEE-Eee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 578999999 544 689999999999999999999999999999999999987 6999999999
Q ss_pred eEEEEEeccCcC-CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---------------
Q 048695 488 LLLCYVEKLDAH-QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--------------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~-~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--------------- 551 (846)
+.-+.++|+..+ ||.||+|-+.++..-... +....+..+.++++|...++.+++.+...+|||
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 678999998765 555999999998643311 122235566789999999999999999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--Ch
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NH 624 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~ 624 (846)
.++++||||||||.||...+..++++.|++ ++.|..|++ -||++.+..+||||++|+ +||++..|+|.+ +.
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~l-a~~g~~V~~VLHDLNLAA~YaDrivll~-~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL-AREGGAVLAVLHDLNLAAQYADRIVLLH-QGRVIASGSPQDVLTD 231 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHH-HhcCCcEEEEEccchHHHHhhheeeeee-CCeEeecCCHHHhcCH
Confidence 566799999999999999999999999999 677888888 999999999999999999 999999999987 56
Q ss_pred HHHHHHHhhCCCCCCCCCC
Q 048695 625 DIILDYFLLIPKNPRYSKR 643 (846)
Q Consensus 625 ~~l~~~f~~~~~~~~~~~~ 643 (846)
+.+...|.....+...|..
T Consensus 232 Etl~~vyg~~~~V~~~P~~ 250 (259)
T COG4559 232 ETLERVYGADIRVGRHPAR 250 (259)
T ss_pred HHHHHHhCCceeeeeccCC
Confidence 7788888764433344444
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.2e-36 Score=312.08 Aligned_cols=187 Identities=20% Similarity=0.199 Sum_probs=167.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 i~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTK-RFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEE-EEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 46899999 775 4679999999999999999999999999999999999974 999999998 259
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. ||+||+.+....+ ....++.+++++++++.+||++..++.++++|+ .+|++
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988888 9999999875543 234455566889999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.+++|++++|+ +|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999994445899999 999999999999999999 99998876
No 48
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=336.18 Aligned_cols=192 Identities=21% Similarity=0.187 Sum_probs=175.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
.++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +.
T Consensus 3 ~l~i~~l~~-~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTK-AYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEE-EeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 589999999 786 4679999999999999999999999999999999999974 999999999 45
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..+++. ||+||+.|+...+ +.++++.+++++++++.+||++..++++++||| .+|+
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999 9999999987644 344566667899999999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||+|||+.++..+.+.|++++++.|.|+|+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~-~G~i~~~g~~~~ 220 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLE 220 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999999999999995555899999 999999999999999999 999999998743
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-36 Score=316.52 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=170.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 2 ~l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVSK-RFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEEE-EEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 689999999 786 4679999999999999999999999999999999999985 999999998 25
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
++|++|++.+++. ||+||+.++...+.. .....++..++++++++.+||++..++.+++||+ .+|
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 8999999988888 999999987544311 0012334456788999999999999999999998 899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++|+|||||+|||+.++..+.++|++++++.|+|||+ ||+.+++.+.||++++|+ +|+++..|++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 221 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRIEQVGTP 221 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEEecCH
Confidence 9999999999999999999999999994445899999 999999999999999999 9999999986
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.6e-36 Score=315.90 Aligned_cols=189 Identities=23% Similarity=0.279 Sum_probs=169.7
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSK-RYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEE-EeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 46889999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
+.++|++|++.+++. ||+||+.+....+ ....++..++++++++.+||++..++.+++||+ .+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 248999999999998 9999999875443 233445556789999999999999999999998 89
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.+++|++++|+ +|+++..|+.+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 218 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIY-EGKVLAEGTPE 218 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEEEeCHH
Confidence 9999999999999999999999999999 567899999 999999999999999999 99999998864
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.3e-36 Score=312.79 Aligned_cols=185 Identities=20% Similarity=0.219 Sum_probs=164.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~l~~-~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSK-AYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEE-EecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 478999999 7752 12469999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. ||+||+.+....+ +...++..++++++++.+||.+..++.+++||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 248999999988888 9999999876543 233445567899999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++.|.|||+ ||+.+++.++||++++|+ +|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEF-NRRGTTVLVATHDINLVETYRHRTLTLS-RGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCcC
Confidence 999999999999999999999999999999 667899999 999999999999999999 8874
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-36 Score=311.65 Aligned_cols=194 Identities=21% Similarity=0.238 Sum_probs=169.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-------eEEEEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-------LLLCYV 493 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-------~~igyv 493 (846)
++++|+++ .|++. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+. |.+|+|.++| +.++||
T Consensus 1 l~~~~l~~-~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSK-TYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYV 78 (220)
T ss_pred CeEEEEEE-EcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEE
Confidence 46889999 77521 11167999999999999999999999999999999999997 4999999999 468999
Q ss_pred eccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEE
Q 048695 494 EKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLL 559 (846)
Q Consensus 494 ~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlL 559 (846)
+|++.+++. ||+||+.+....+ +.+.++..++++++++.+||++..++.+++||+ .+|++|+|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999988888 9999999876543 233445566889999999999999999999998 89999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-CCEEEEecCC
Q 048695 560 EEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-EGHQAYFGPR 620 (846)
Q Consensus 560 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-~G~~v~~G~~ 620 (846)
||||+|||+.++..+.+.|+++.++.|+|||+ ||+.+++.++||++++|+. +|+++..+++
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999984456899999 9999999999999999984 4999988876
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=300.56 Aligned_cols=190 Identities=20% Similarity=0.232 Sum_probs=172.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---c---ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---P---FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~---~~G~I~~~G------ 487 (846)
..++++||++ .|+ ++++|+|||+.++++++||||||||||||||||++..+. | .+|+|.++|
T Consensus 6 ~~~~~~~l~~-yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNL-YYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeE-EEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 4699999999 887 789999999999999999999999999999999999875 3 789999999
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+++|+|+|.+.-||.|++||+.++.+++ +..+++.++.|++.|+...|. +..++...+|||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ 156 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ 156 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence 6899999999999999999999999887 444477888999999999885 345566777998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+|||||||||+|||.+..+|-+++.+| + +.-|||+ ||.+..+.+..|+..++. .|+++++|+.+
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL-k-~~yTIviVTHnmqQAaRvSD~taFf~-~G~LvE~g~T~ 233 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-K-KKYTIVIVTHNMQQAARVSDYTAFFY-LGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH-H-hccEEEEEeCCHHHHHHHhHhhhhhc-ccEEEEEcCHH
Confidence 899999999999999999999999999999 5 5689999 999999999999999999 99999999974
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.2e-36 Score=311.95 Aligned_cols=191 Identities=22% Similarity=0.306 Sum_probs=168.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
+++++|+++ .|++. .+.+++|+|+|+++++||+++|+|+|||||||||++|+|+.+ .+|+|.++| +
T Consensus 1 ~l~~~~v~~-~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTK-RFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEE-ecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 378999999 77521 111279999999999999999999999999999999999985 999999998 3
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+||++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||++..++.+++||+ .+|
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 59999999988998 9999999876543 334555667889999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+++|++++|+ +|+++..|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEeecC
Confidence 999999999999999999999999999 667999999 999999999999999999 99998754
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-36 Score=330.75 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=174.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
||+++||++ .|+.+ +.++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|
T Consensus 1 mi~i~~l~~-~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISK-VFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEE-EeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999 77521 124679999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+|||+|+..+++. ||+||+.+....+ +.++++.+++++++++.+||++..++++++||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 259999999999988 9999999976544 344556667899999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+++.|++++++.|+|||+ ||+++++.++||++++|+ +|++++.|++++
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~-~G~i~~~g~~~~ 227 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID-AGRLVEQGTVSE 227 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 9999999999999999999999999999995455999999 999999999999999999 999999998743
No 56
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=321.40 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=170.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++....++.+|+|||+++++||++||+||||||||||+++|+|+++ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTH-IYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEE-ECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 489999999 775221123579999999999999999999999999999999999985 999999999
Q ss_pred --eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCccC----------
Q 048695 488 --LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL--PYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~v~~lSg---------- 551 (846)
+.+|||+|++. .+.. ||+||+.++.... +.++++..++++++++.+||. +..++++.+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 24899999863 3334 9999999875443 455666777899999999997 678999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..++++|++++++.|+|||+ ||+.+++.++|||+++|+ +|++++.|++.
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~-~G~i~~~g~~~ 230 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN-KGKCELQGTPR 230 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 8999999999999999999999999999994445999999 999999999999999999 99999999874
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-36 Score=308.75 Aligned_cols=186 Identities=20% Similarity=0.333 Sum_probs=167.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------eEEEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------LLLCY 492 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------~~igy 492 (846)
++++|+++ .|+ ++.+++|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTK-RFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74 (210)
T ss_pred CEEEEEEE-EEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEE
Confidence 46889999 775 4679999999999999999999999999999999999975 999999999 46999
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
++|+..+++. ||+||+.+....+ +.+..+..++++++++.+||++..++.+++||+ .+|++|+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999988888 9999999876544 234455567889999999999999999999998 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+++|++++|+ +|++++.|
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHhhhEEEEEe-CCEEEecC
Confidence 99999999999999999999999 566899999 999999999999999999 99998754
No 58
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-36 Score=303.51 Aligned_cols=192 Identities=21% Similarity=0.226 Sum_probs=173.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+|+++||+. .|+ +.++|++||+++++||+++|+|+||||||||||+|+|+.+ .+|+|.++|
T Consensus 2 ~mL~v~~l~~-~YG-----~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSA-GYG-----KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEee-ccc-----ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 3799999999 887 6899999999999999999999999999999999999997 899999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLG-LLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~v~~lSg------------ 551 (846)
+.++||||....||. ||+|||..++..+.. ++..+..++++.+.+- |.+.++++.|+|||
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 579999999999999 999999998765521 1222223888888884 88899999999999
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||.||-|.-.++|.+.++++.++.|.||++ .|+...+.+++||.++|. +|++++.|+.++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle-~Griv~~G~~~e 223 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE-NGRIVLSGTAAE 223 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe-CCEEEEecCHHH
Confidence 9999999999999999999999999999994455889999 999999999999999999 999999999865
No 59
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.6e-36 Score=335.45 Aligned_cols=205 Identities=16% Similarity=0.247 Sum_probs=178.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++ .+|+|.++|
T Consensus 3 ~L~~~nls~-~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSV-EFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEE-EEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 699999999 786 5789999999999999999999999999999999999975 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+++|||+|+..+++. ||+||+.++...+... ....++.+++++++++.+||.+..++.+.+||+ +
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 469999999988888 9999999865322110 111234556899999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILD 629 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~ 629 (846)
+|++|+|||||+|||+.++.+++++|+++ +++|+|||+ +|+++++.++|||+++|+ +|+++..|++++ ....+.+
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l-~~~g~TIIivsHdl~~~~~~adrii~l~-~G~iv~~G~~~ev~~~~~l~~ 234 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRL-VDDGKTAVAAIHDLDLAARYCDELVLLA-DGRVRAAGPPADVLTADTLRA 234 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEecCHHHHhCcHHHHH
Confidence 99999999999999999999999999999 567899999 999999999999999999 999999999864 2334666
Q ss_pred HHhh
Q 048695 630 YFLL 633 (846)
Q Consensus 630 ~f~~ 633 (846)
.|..
T Consensus 235 ~~~~ 238 (402)
T PRK09536 235 AFDA 238 (402)
T ss_pred HhCC
Confidence 6653
No 60
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-36 Score=299.00 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=183.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|..+||.+ +|+ ++++++|||+.+++||+++|+|||||||||.+.++.|+.+ ++|+|.+||
T Consensus 4 ~L~a~~l~K-~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 4 TLVAENLAK-SYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EEEehhhhH-hhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHh
Confidence 689999999 786 6899999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
..+||+||++..|.. ||+||+......+.. ...+.+.+++++++|+.++|.++++++..+||| .
T Consensus 78 rlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred hcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 469999999999999 999999988877632 122346666789999999999999999999999 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILD 629 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~ 629 (846)
+|+.++||||++|.||.+..+|-++++.| ++.|..|++ -|+..|...+|||.++++ +|++..+|++++ +.+.+.+
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L-~~rgiGvLITDHNVREtL~i~dRaYIi~-~G~vla~G~p~ei~~n~~Vr~ 234 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHL-KDRGIGVLITDHNVRETLDICDRAYIIS-DGKVLAEGSPEEIVNNEDVRR 234 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHH-HhCCceEEEccccHHHHHhhhheEEEEe-cCeEEecCCHHHHhcChhhhh
Confidence 99999999999999999999999999999 889999999 999999999999999999 999999999976 3345555
Q ss_pred HHh
Q 048695 630 YFL 632 (846)
Q Consensus 630 ~f~ 632 (846)
+|-
T Consensus 235 ~YL 237 (243)
T COG1137 235 VYL 237 (243)
T ss_pred hcc
Confidence 554
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=312.50 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=170.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|++. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 ~i~~~~l~~-~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSK-VFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceE-EccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999 77521 011379999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. |++||+.+....+ ..+.++..+.++++++.+||.+..++.+.+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 248999999999988 9999999876543 233445566789999999999999999999997
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+++|++++|+ +|+++..|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 225 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME-KGEVVEEGTV 225 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEecCH
Confidence 8999999999999999999999999999994445899999 999999999999999999 9999999875
No 62
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.6e-36 Score=325.64 Aligned_cols=177 Identities=18% Similarity=0.215 Sum_probs=163.4
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------eEEEEEeccCcCCCC-CHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------LLLCYVEKLDAHQTY-SVS 505 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~~igyv~Q~~~~~~~-TV~ 505 (846)
++.+|+|||+++++||++||+||||||||||+|+|+|++ |++|+|.++| +.+||++|++.+++. ||+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 467999999999999999999999999999999999997 4999999999 359999999999998 999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHH
Q 048695 506 ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTL 572 (846)
Q Consensus 506 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~ 572 (846)
||+.+.+.++ +.+.++..++++++++.+||.+..++++++||+ .+|++|+|||||+|||+.++.
T Consensus 85 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 161 (302)
T TIGR01188 85 ENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161 (302)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 9999877654 344555567899999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+++.|+++ +++|+|||+ ||+++++.++||++++|+ +|++++.|++
T Consensus 162 ~l~~~l~~~-~~~g~tvi~~sH~~~~~~~~~d~v~~l~-~G~i~~~g~~ 208 (302)
T TIGR01188 162 AIWDYIRAL-KEEGVTILLTTHYMEEADKLCDRIAIID-HGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999 667999999 999999999999999999 9999999987
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-35 Score=312.96 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=168.7
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTK-RFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEE-EEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 46789999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCccC--------
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKT-------VNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------- 551 (846)
+.++|++|++.+++. ||+||+.+....+.... ...++..++++++++.+||++..++.+++||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 138999999999998 99999998765431110 02344556789999999999999999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.++||++++|+ +|+++..|++
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 227 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLD-QGRVIAEGTP 227 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEe-CCEEEeecCH
Confidence 899999999999999999999999999999 557899999 999999999999999999 9999999876
No 64
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3e-36 Score=291.30 Aligned_cols=188 Identities=22% Similarity=0.239 Sum_probs=168.5
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------~~i 490 (846)
+.+++|++ .|+ ..=-..++.+++||++||+||||||||||||+|||.. |.+|+|.+|| |.+
T Consensus 2 l~L~~V~~-~y~-------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRF-SYG-------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEE-eeC-------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 56778888 675 2233678999999999999999999999999999997 7999999999 789
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
++++|+.++|.+ ||.+|+.++...-+ +. .++.+++++.++.++||.++.++++++||| .+-+|
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe
Confidence 999999999999 99999998754221 22 356677999999999999999999999999 67779
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
|+||||+|+|||.-+.+++.++.+++.+++.|+++ ||..+++.+++|++++++ +||+.+.|+..
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEe-CCEEEeeccHH
Confidence 99999999999999999999999999999999999 999999999999999999 99999999874
No 65
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=314.71 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=170.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------eEEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------LLLCY 492 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------~~igy 492 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +.+||
T Consensus 1 ml~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYA-DYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74 (255)
T ss_pred CEEEEEEEE-EeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEE
Confidence 478999999 775 4679999999999999999999999999999999999975 999999998 24899
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||.+..++.+++||+ .+|++|+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999988888 9999999875443 234455567899999999999989999999998 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-CCEEEEecCC
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-EGHQAYFGPR 620 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-~G~~v~~G~~ 620 (846)
|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+. +|+++..++.
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999984456899999 9999999999999999983 4999988765
No 66
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=320.72 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=170.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
.++++||++ .|++.++.++++|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+
T Consensus 2 ~l~~~~l~~-~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEH-RYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEE-EECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 489999999 785322123579999999999999999999999999999999999985 9999999982
Q ss_pred -----EEEEEeccC--cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---------
Q 048695 489 -----LLCYVEKLD--AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--------- 551 (846)
Q Consensus 489 -----~igyv~Q~~--~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--------- 551 (846)
.+|||+|++ .+++.||+||+.|+.... +.++++..++++++++.+||. +..++.+.+||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 489999986 344339999999875433 345566667899999999997 678999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..++++|++++++.|.|||+ ||+.+++.++|||+++|+ +|++++.|+++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~-~G~i~~~g~~~ 231 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH-KGTVFLQGTPR 231 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999999999995456999999 999999999999999999 99999999873
No 67
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-36 Score=311.51 Aligned_cols=198 Identities=18% Similarity=0.196 Sum_probs=183.8
Q ss_pred eEEEEeceeeeeeccCC-------------------CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cc
Q 048695 420 VTFVFEGLTFSRYEEGS-------------------NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PF 479 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~-------------------~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~ 479 (846)
..++++||++ .+++.. .+...-++|+|++++.||+..|||-||||||||+++|.++. |+
T Consensus 3 ~~i~i~nv~k-iFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept 81 (386)
T COG4175 3 VKIEIKNVYK-IFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT 81 (386)
T ss_pred ceEEeeccee-ecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC
Confidence 3588999998 776310 11234689999999999999999999999999999999997 59
Q ss_pred cceEEEcC----------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc
Q 048695 480 TGSLNGNV----------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS 542 (846)
Q Consensus 480 ~G~I~~~G----------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~ 542 (846)
+|+|+++| +++++|+|...++|+ ||.||..|+..++ +++++|+++++.+.|+.+||++++
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhh
Confidence 99999999 689999999999999 9999999999987 889999999999999999999999
Q ss_pred ccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE
Q 048695 543 NQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL 608 (846)
Q Consensus 543 ~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL 608 (846)
++++++||| .+|+|||+|||+|+|||--+.++-+.|.+++++.++||++ |||++|++++.|||.+|
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 999999999 9999999999999999999999999999998888999999 99999999999999999
Q ss_pred ccCCEEEEecCCCC
Q 048695 609 TKEGHQAYFGPRGS 622 (846)
Q Consensus 609 ~~~G~~v~~G~~~~ 622 (846)
+ +|+++..|+|++
T Consensus 239 k-dG~ivQ~Gtp~e 251 (386)
T COG4175 239 K-DGEIVQVGTPEE 251 (386)
T ss_pred c-CCeEEEeCCHHH
Confidence 9 999999999976
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.5e-35 Score=309.56 Aligned_cols=189 Identities=26% Similarity=0.368 Sum_probs=167.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
|+++||++ .|+++ ++++|+|||+++++||+++|+||||||||||+++|+|+.+ ++|+|.++| +.
T Consensus 1 l~~~~l~~-~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTK-TYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEE-EeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 46889999 77511 2679999999999999999999999999999999999974 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+||++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||.+..++.+++||+ .+|+
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999988888 9999999876544 233445556789999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+.||++++|+ +|+++..|++
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~i~~~~~~ 216 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEV-RK-GRSIILTTHSMDEAEALCDRIAIMS-DGKLRCIGSP 216 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH-hc-CCEEEEEcCCHHHHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999998 55 589999 999999999999999999 9999999876
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=320.71 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=170.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
|++++||++ .|++.....+.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|+++|
T Consensus 1 mi~~~~v~~-~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNY-TYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEE-EeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 488999999 785322122469999999999999999999999999999999999985 999999998
Q ss_pred ----eEEEEEeccC--cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---------
Q 048695 488 ----LLLCYVEKLD--AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~--~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--------- 551 (846)
+.+|||+|++ .+++.||.||+.|+.... +.++++.+++++++++.+||. +..++.+.+||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 1489999986 344349999999876543 345666777899999999996 578999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.++|||+++|+ +|++++.|+++
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l-~~~g~til~vtHd~~~~~~~~dri~~l~-~G~i~~~g~~~ 229 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLE-KGHIISCGTPS 229 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999 667999999 999999999999999999 99999999874
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-35 Score=308.57 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=168.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+++ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 5 ~l~~~~l~~-~~~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCK-RYQEG-SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEE-EcCCC-CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 799999999 77521 112579999999999999999999999999999999999985 999999998
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+||++|+..+++. ||+||+.+....+ +.++++.+++++++++.+||++..++.+++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 148999999988888 9999999876543 233445567889999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.. +|++++|+ +|+++..|+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~-~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMR-DGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEE-CCEEEEEecc
Confidence 9999999999999999999999999999994446899999 999999876 57999999 9999988875
No 71
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-35 Score=308.23 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=161.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
|+++||++ .|++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSK-TYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEE-EecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46889999 775211 11679999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. ||+||+.+....+ +....+..++++++++.+||++..++.+++||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 148999999988888 9999999976544 233444556789999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++. .||++++|+ +|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~-~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR-DGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee-CCcC
Confidence 9999999999999999999999999999994336899999 99999986 999999999 8874
No 72
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-35 Score=318.25 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=170.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|+++...++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSY-TYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEE-EECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 589999999 785322223579999999999999999999999999999999999985 999999998
Q ss_pred ----eEEEEEeccC--cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---------
Q 048695 488 ----LLLCYVEKLD--AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~--~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--------- 551 (846)
+.+|||+|++ .+++.||+||+.++...+ +.++++..++++++++.+||. +..++.+.+||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1489999985 344349999999875432 345566677899999999997 788999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.++|+++.++.|+|||+ ||+.+++.++|||+++|+ +|++++.|+++
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~-~G~i~~~g~~~ 231 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK-EGSIVSQTSPK 231 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999999999994456999999 999999999999999999 99999999873
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=312.62 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=167.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSK-TYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEE-ecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 46889999 7751 2679999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRV-----GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------- 551 (846)
+.++|++|++.+++. ||+||+.+...... ..+...++..++++++++.+||.+..++.+++||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 148999999988888 99999987542110 00111234456788999999999999999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|+++
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i~~~~~~~ 230 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRIVFDGPPA 230 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEeecCHH
Confidence 8999999999999999999999999999994445899999 999999999999999999 99999998874
No 74
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4e-35 Score=309.70 Aligned_cols=190 Identities=23% Similarity=0.292 Sum_probs=168.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSF-AYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 478999999 775 4679999999999999999999999999999999999975 999999999 3
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.++|++|++.+++. |++||+.+.+..+ +.+.++..++++++++.+||.+..++.+++||+ .+|
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 58999999888788 9999998876543 233444556789999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.. +|++++|+ +|+++..|+++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~-~G~i~~~~~~~ 217 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH-RGRVLADGAAA 217 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe-CCeEEEeCCHH
Confidence 9999999999999999999999999994346899999 999999865 99999999 99999998763
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-35 Score=310.41 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=168.7
Q ss_pred EEEeceeeeeeccCCCCC-cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 422 FVFEGLTFSRYEEGSNES-TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
++++||++ .|+ + +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVTK-RYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEEE-EeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhh
Confidence 46889999 775 3 679999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCccC-------------
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP--YSNQLVGSLHY------------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||.+ ..++.+.+||+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 358999999999988 9999999876543 2344555678899999999996 78999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+++|++++|+ +|++++.|++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 220 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEIVQVGTP 220 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEecCH
Confidence 9999999999999999999999999999994345899999 999999999999999999 9999999876
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5e-35 Score=309.74 Aligned_cols=191 Identities=15% Similarity=0.169 Sum_probs=170.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~l~~-~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSK-HFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEE-EEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 478999999 775 4679999999999999999999999999999999999975 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++. ||+||+.+...... +...++..++++++++.+||++..++.+.+||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 248999999988888 99999988643211 234455567789999999999989999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.++|+++ +++|+|||+ ||+.+++.++||++++|+ +|++++.|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 221 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFID-KGRIAEDGDPQ 221 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEeeCCHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 99999998863
No 77
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.7e-35 Score=326.08 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=166.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------------eEEEEEeccCcCCC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------------LLLCYVEKLDAHQT 501 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------------~~igyv~Q~~~~~~ 501 (846)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +.+|||+|+..++|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 5779999999999999999999999999999999999985 999999999 25999999999999
Q ss_pred C-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCC
Q 048695 502 Y-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVD 567 (846)
Q Consensus 502 ~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD 567 (846)
. ||+||+.++.... +.++++..+++.++++.+||++..++++++||| .+|++|||||||+|||
T Consensus 85 ~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 85 HMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9 9999999987654 456677778999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 568 TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 568 ~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+.++..+.+.+++++++.|+|||+ ||+.+++.++|||+++|+ +|+++..|++++
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 999999999999995556999999 999999999999999999 999999998754
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-35 Score=316.09 Aligned_cols=191 Identities=20% Similarity=0.245 Sum_probs=169.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+. ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~-~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHF-RYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEE-EeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 699999999 7741 3569999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+||++|++. .+.. ||+||+.++.... +.++++.+++++++++.+||.+..++.+.+||+ .
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 35899999863 3456 9999999875432 344555567899999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|++|+|||||+|||+.++.+++++|+++ +++|+|||+ ||+++++.++|||+++|+ +|++++.|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tili~tH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 223 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLK-EGRVLAEGDKS 223 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999999999999999 566999999 999999999999999999 99999999873
No 79
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-35 Score=319.97 Aligned_cols=196 Identities=15% Similarity=0.192 Sum_probs=171.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++||++ .|+.+...++.+|+|||+++++||++||+||||||||||+++|+|+++ ++|+|.++|
T Consensus 2 ~i~~~~l~~-~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVK-IFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEE-EECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 589999999 785322122469999999999999999999999999999999999985 999999975
Q ss_pred ------------------------eEEEEEeccC-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-c
Q 048695 488 ------------------------LLLCYVEKLD-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-P 540 (846)
Q Consensus 488 ------------------------~~igyv~Q~~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~ 540 (846)
+.+|||+|++ ..+.. ||+||+.|+...+ +.++++..++++++++.+||. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 2379999985 33445 9999999876543 456667778899999999997 7
Q ss_pred ccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEE
Q 048695 541 YSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLAL 606 (846)
Q Consensus 541 ~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vl 606 (846)
..++.+.+||| .+|++|+|||||+|||+.++..+++.|+++ ++.|+|||+ ||+.+++.+.|||++
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 89999999998 899999999999999999999999999999 677999999 999999999999999
Q ss_pred EEccCCEEEEecCCCC
Q 048695 607 ILTKEGHQAYFGPRGS 622 (846)
Q Consensus 607 lL~~~G~~v~~G~~~~ 622 (846)
+|+ +|++++.|++++
T Consensus 237 vl~-~G~i~~~g~~~~ 251 (305)
T PRK13651 237 FFK-DGKIIKDGDTYD 251 (305)
T ss_pred EEE-CCEEEEECCHHH
Confidence 999 999999998743
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.6e-35 Score=305.14 Aligned_cols=182 Identities=18% Similarity=0.244 Sum_probs=163.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.+
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTK-TYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEE-EEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 46899999 775 4689999999999999999999999999999999999985 999999999 258
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. ||+||+.+....+ .. ..++++++++.++|++..++.+++||+ .+|++
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988888 9999999876433 11 235688999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+|||||+|||+.++..+.+.|+++ +++|+|+|+ ||+.+++.+++|++++|+ +|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~tH~~~~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHhcCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999 557899999 999999999999999999 99998765
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.9e-35 Score=313.40 Aligned_cols=193 Identities=18% Similarity=0.246 Sum_probs=171.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 7 ~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 7 LVDMRGVSF-TRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred eEEEeCeEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence 799999999 775 5679999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|+..+++. ||+||+.+...... ..+.++.+++++++++.+||.+..++.+++||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 148999999988888 99999998653321 123444556788999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~-~G~i~~~g~~~~ 230 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA-DKKIVAHGSAQA 230 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE-CCEEEEeCCHHH
Confidence 8999999999999999999999999999994445899999 999999999999999999 999999998753
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=310.62 Aligned_cols=191 Identities=20% Similarity=0.272 Sum_probs=171.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAK-AYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEE-EeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 699999999 775 4679999999999999999999999999999999999975 999999998
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.++|++|++.+++. ||+||+.+....+. ..++++.+.+++++++.+||.+..++.+++||+ .
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 248999999988888 99999988654321 223445566789999999999989999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|++|+|||||+|||+.++..+.+.++++ +++|+|||+ ||+.+++.+.||++++|+ +|+++..|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiii~sH~~~~~~~~~d~v~~l~-~G~i~~~~~~~ 222 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVS-QGHLIAHGTPT 222 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhcCEEEEEe-CCeEEeeCCHH
Confidence 99999999999999999999999999999 667999999 999999999999999999 99999999874
No 83
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-35 Score=315.94 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=171.2
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+.+|+++|+++ .|++ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~~~l~~~~l~~-~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 3 DYILKVEELNY-NYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred CceEEEEeEEE-EeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchH
Confidence 34799999999 7741 3679999999999999999999999999999999999985 999999999
Q ss_pred ----eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 ----LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+||++|++. .+.. ||+||+.+..... +.+.++..++++++++.+||.+..++.+++||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 24899999863 2344 9999999865432 345566667899999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|++++++.|+|||+ ||+++++.++|||+++|+ +|++++.|+++
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~-~G~i~~~g~~~ 227 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EGRVILQGNPK 227 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999999999994445999999 999999999999999999 99999999874
No 84
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-35 Score=327.72 Aligned_cols=197 Identities=19% Similarity=0.187 Sum_probs=173.3
Q ss_pred EEEEeceeeeeeccCCC-------------------CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-cc
Q 048695 421 TFVFEGLTFSRYEEGSN-------------------ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FT 480 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~-------------------~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~ 480 (846)
+|+++||++ .|++... +...+|+|+|+++++||+++|+||||||||||||+|+|+++ .+
T Consensus 4 ~i~~~~~~k-~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 4 KLEIKNLYK-IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EEEEeeeEE-ecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 578888888 7763210 12348999999999999999999999999999999999985 99
Q ss_pred ceEEEcC----------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 048695 481 GSLNGNV----------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN 543 (846)
Q Consensus 481 G~I~~~G----------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~ 543 (846)
|+|.++| +.+|||+|+..+++. ||+||+.+....+ +.++++..++++++++.+||++..+
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 9999998 159999999999999 9999999987654 3445566678999999999999999
Q ss_pred cccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 544 QLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 544 ~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+++.+||+ .+|++|||||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+++|++++|+
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 99999998 9999999999999999999999999999995456999999 999999999999999999
Q ss_pred cCCEEEEecCCCC
Q 048695 610 KEGHQAYFGPRGS 622 (846)
Q Consensus 610 ~~G~~v~~G~~~~ 622 (846)
+|+++..|++++
T Consensus 240 -~G~i~~~g~~~~ 251 (400)
T PRK10070 240 -NGEVVQVGTPDE 251 (400)
T ss_pred -CCEEEecCCHHH
Confidence 999999998743
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.6e-35 Score=311.28 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=168.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~l~~-~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSK-VYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeee-ecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 478999999 6641 3579999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRV-----GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------- 551 (846)
+.+||++|++.+++. ||+||+.++..... ......++.+++++++++.+||.+..++.+.+||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 138999999988888 99999987532100 00111234456789999999999999999999998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G~i~~~~~~~~ 232 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEIVFDGAPSE 232 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEEEecCCHHH
Confidence 9999999999999999999999999999994445899999 999999999999999999 999999998743
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.5e-35 Score=304.60 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=163.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~l~~-~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSK-AYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeE-EeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999 6731 4679999999999999999999999999999999999975 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. ||+||+.+....+ +...++.+++++++++.+||.+..++.+.+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 248999999988888 9999999876543 233445556889999999999988999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILD-DGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhcCEEEEec-CCC
Confidence 899999999999999999999999999999 667899999 999999999999999999 874
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-35 Score=315.60 Aligned_cols=193 Identities=16% Similarity=0.208 Sum_probs=170.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
+++++||++ .|++. +.+.+|+|||+++++||++||+||||||||||+++|+|++ |.+|+|.++|
T Consensus 4 ~l~~~~l~~-~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTF-KYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEE-EcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 699999999 77521 1246999999999999999999999999999999999997 4999999999
Q ss_pred eEEEEEeccC-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLD-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+|||+|++ ..++. ||+||+.++.... +.++++..++++++++.+||++..++.+++||+ .
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 3689999997 35667 9999999875433 345666677899999999999999999999997 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|++|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++ ..|||+++|+ +|+++..|+++
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~-~G~i~~~g~~~ 225 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK-NGQVESTSTPR 225 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999994445999999 9999998 5799999999 99999999874
No 88
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=315.29 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=169.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++||++ .|++....++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|+
T Consensus 2 ~i~~~~l~~-~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDY-IYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEE-EcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 589999999 785211112579999999999999999999999999999999999985 9999999992
Q ss_pred -----EEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---------
Q 048695 489 -----LLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--------- 551 (846)
Q Consensus 489 -----~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--------- 551 (846)
.+||++|++. .+.. ||+||+.++...+ ...+++..++++++++.+||+ +..++++++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 3899999862 2335 9999999875433 334556667899999999997 688999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++.|.|||+ ||+++++.++||++++|+ +|+++..|+++
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l-~~~g~tvlivsH~~~~~~~~~d~v~~l~-~G~i~~~g~~~ 230 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLE-HGKLIKHASPK 230 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 99999999874
No 89
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-34 Score=319.92 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=174.7
Q ss_pred eEEEEeceeeeeeccCC--------CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---
Q 048695 420 VTFVFEGLTFSRYEEGS--------NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~--------~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--- 487 (846)
++|+++||++ .|+.+. ++...+++|||+++++||+++|+|+||||||||+++|+|+++ .+|+|.++|
T Consensus 7 ~~l~v~~l~~-~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKV-HFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEE-EECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 4799999999 775211 113579999999999999999999999999999999999985 999999999
Q ss_pred ------------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC
Q 048695 488 ------------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY 551 (846)
Q Consensus 488 ------------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg 551 (846)
+.++||+|++ .++|. ||.||+.+......+ ..++++.+++++++++.+||. +..++.+++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 3599999997 57888 999999987654311 245667778899999999995 578999999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|++||||+|||+.++.+++++|+++.++.|.|+|+ |||++++.++|||+++|+ +|+++..
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~-~G~ive~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY-LGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999994456999999 999999999999999999 9999999
Q ss_pred cCCCC
Q 048695 618 GPRGS 622 (846)
Q Consensus 618 G~~~~ 622 (846)
|++++
T Consensus 244 g~~~~ 248 (331)
T PRK15079 244 GTYDE 248 (331)
T ss_pred cCHHH
Confidence 98743
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.5e-35 Score=306.20 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=164.5
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-----c-ccceEEEcC--------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-----P-FTGSLNGNV-------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-----~-~~G~I~~~G-------- 487 (846)
++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. + .+|+|.++|
T Consensus 1 i~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNV-YYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEE-EcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 46899999 775 467999999999999999999999999999999999997 5 899999999
Q ss_pred ------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc--cCCccC-------
Q 048695 488 ------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL--VGSLHY------- 551 (846)
Q Consensus 488 ------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~--v~~lSg------- 551 (846)
+.+||++|++.++ . ||+||+.+....+. ..+.++.+++++++++.+||.+..++. +.+||+
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 1489999998877 7 99999998765431 112233456789999999999887777 599998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|+++ +++ +|||+ ||+.+++.++||++++|+ +|++++.|+++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~-~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 225 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKE-YTIVIVTHNMQQAARVADRTAFLL-NGRLVEFGPTE 225 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hhC-cEEEEEeccHHHHHHhCCEEEEEe-CCEEEEecCcc
Confidence 899999999999999999999999999999 555 89999 999999999999999999 99999999874
No 91
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.6e-35 Score=304.73 Aligned_cols=185 Identities=20% Similarity=0.179 Sum_probs=164.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 1 ~l~~~~l~~-~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSK-AYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEE-EecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 378999999 7731 4679999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. |++||+.+....+ +.+.++..++++++++.++|.+..++.+++||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 148999999888888 9999999876543 234455556788999999999989999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|.|+|+ ||+.+++.+.+|++++|+ +|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEc
Confidence 899999999999999999999999999999 666899999 999999999999999999 99974
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-35 Score=302.60 Aligned_cols=184 Identities=24% Similarity=0.321 Sum_probs=164.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++|+++ .|+ ++.+|+|+|+++++| +++|+|||||||||||++|+|+.+ .+|+|.++| +.
T Consensus 1 i~~~~~~~-~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTK-RYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEE-EEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 46889999 775 457999999999999 999999999999999999999975 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. ||+||+.+....+ +.++++..++++++++.+||.+..++.+++||+ .+|+
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999988988 9999999876554 233445566789999999999989999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
+|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+++||+++|+ +|+++..|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~vsH~~~~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSEL-GE-DRIVILSTHIVEDVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999 55 589999 999999999999999999 99998765
No 93
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.4e-35 Score=305.10 Aligned_cols=186 Identities=24% Similarity=0.271 Sum_probs=165.5
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
|+++||++ .|+ ++++|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNA-GYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEe-ecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 46899999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQL-GLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~v~~lSg-------------~ 552 (846)
+.++|++|++.+++. |++||+.+....+ . ..+..++++++++.+ ++.+..++.+++||+ .
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYAR---R--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhc---C--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 248999999989998 9999999876443 1 223345678889988 588888999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|++|+|||||+|||+.++..+++.|+++ ++.|+|||+ ||+.+++.++||++++|+ +|+++..|++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhccEEEEee-CCeEEEeCCH
Confidence 99999999999999999999999999999 567899999 999999999999999999 9999998875
No 94
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-34 Score=307.47 Aligned_cols=192 Identities=18% Similarity=0.240 Sum_probs=168.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 2 ~i~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSV-SFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEE-EcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 589999999 775 467999999999999999999999999999999999997 4999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVG-----KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--------- 551 (846)
+.++|++|++.+++. ||+||+.+....... ....+++.+++++++++.+|+++..++.+++||+
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 249999999999998 999999986532110 0112234556789999999999999999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|+++ ++ ++|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~~~~~~~~~ 227 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AG-KHSVVVVEHDMEFVRSIADKVTVLH-QGSVLAEGSLD 227 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hc-CCEEEEEECCHHHHHHhCCEEEEEE-CCeEEeeCCHH
Confidence 899999999999999999999999999999 55 689999 999999999999999999 99999998864
No 95
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.5e-35 Score=324.22 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=165.3
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------------eEEEEEeccC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------------------LLLCYVEKLD 497 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------------------~~igyv~Q~~ 497 (846)
...+|+|+|+++++||+++|+||||||||||+++|+|+++ ++|+|+++| +.+|||+|+.
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 5679999999999999999999999999999999999985 999999987 2599999999
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
.+++. ||+||+.++...+ +.++++.+++++++++.+||++..++++++||| .+|+||||||||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred cCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99998 9999999986554 345666777899999999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||+.++.++.+.|++++++.|+|||+ ||+.+++.+++||+++|+ +|+++..|++++
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 9999999999999999995456999999 999999999999999999 999999998754
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=310.12 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=169.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 5 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 5 LLSVSGLMM-RFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred eEEEeeEEE-EEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHH
Confidence 799999999 775 5689999999999999999999999999999999999975 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC----------CCC--CHHHHHHHHHHHHHHcCCCcccccccCCccC--
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVG----------KTV--NAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~----------~~~--~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-- 551 (846)
..++|++|++.+++. ||+||+.++...... ... ..++..++++++++.+||.+..++.+++||+
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQ 158 (255)
T ss_pred hcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHH
Confidence 138899999999998 999999986432110 000 1123345788999999999999999999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|+
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i~~~~~ 237 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN-QGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEecCC
Confidence 8999999999999999999999999999994334899999 999999999999999999 999999998
Q ss_pred CCC
Q 048695 620 RGS 622 (846)
Q Consensus 620 ~~~ 622 (846)
+++
T Consensus 238 ~~~ 240 (255)
T PRK11300 238 PEE 240 (255)
T ss_pred HHH
Confidence 743
No 97
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.3e-35 Score=302.92 Aligned_cols=183 Identities=20% Similarity=0.203 Sum_probs=162.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++|+++ .|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTK-TYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEE-EeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 46889999 7741 2579999999999999999999999999999999999975 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++. |++||+.+....+ +.+.++..++++++++.+||++..++.+++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence 148999999999998 9999999876543 234455566889999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~-~G~~ 214 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHAKELVDTTRHRVIALE-RGKL 214 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCcC
Confidence 999999999999999999999999999999 667899999 999999999999999999 8864
No 98
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=313.42 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=169.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 4 ~~l~~~~l~~-~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISF-RYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEE-EeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3699999999 7752 13569999999999999999999999999999999999975 999999999
Q ss_pred -eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++. .++. ||+||+.+..... +.+.++..++++++++.+||++..++++++||+
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 36899999973 5666 9999999876543 334556667899999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..++++|++++++.|+|||+ ||+.+++. .|||+++|+ +|++++.|+++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~-~G~i~~~g~~~ 225 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMN-KGEILEEGTPE 225 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999999999994445899999 99999986 599999999 99999999874
No 99
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=309.54 Aligned_cols=186 Identities=19% Similarity=0.242 Sum_probs=167.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------eEEE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------LLLC 491 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------~~ig 491 (846)
.+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++| +.++
T Consensus 11 ~~l~i~~l~~-~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSK-RYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEE-EEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 3699999999 776 4679999999999999999999999999999999999985 999999988 4699
Q ss_pred EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEE
Q 048695 492 YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSIL 557 (846)
Q Consensus 492 yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iL 557 (846)
|++|++.+++. ||+||+.+... . ...++++++++.+||.+..++.+++||+ .+|++|
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988898 99999987521 1 1235688999999999999999999998 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
||||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~-~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE-EGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEeecccc
Confidence 9999999999999999999999985556899999 999999999999999999 99999988753
No 100
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.8e-34 Score=307.39 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=169.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVK-KFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEE-EEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 699999999 775 4679999999999999999999999999999999999985 9999999871
Q ss_pred ---------EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------
Q 048695 489 ---------LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------- 551 (846)
Q Consensus 489 ---------~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------- 551 (846)
.+||++|++.+++. ||+||+.++..... ....++..++++++++.+||.+..++.+++||+
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 48999999988888 99999988643211 233445566789999999999989999999998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|.|||+ ||+.+++.++||++++|+ +|++++.|++
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 228 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-AQEKRTMVIVTHEMSFARDVADRAIFMD-QGRIVEQGPA 228 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 667899999 999999999999999999 9999999876
No 101
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=309.69 Aligned_cols=203 Identities=16% Similarity=0.236 Sum_probs=173.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTV-GYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEE-EEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 689999999 776 5689999999999999999999999999999999999975 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+||++|+..+++. |+.||+.++...... ....+++..++++++++.+||.+..++.+++||+ .
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 249999999888888 999999885321100 0111233456789999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILD 629 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~ 629 (846)
+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+.||++++|+ +|+++..|++++ ....+.+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l-~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~~~~~~~~~~ 233 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHDLNQASRYCDHLVVLA-NGHVMAQGTPEEVMTPGLLRT 233 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEECCHHHHHHhcCEEEEEE-CCeEEEEcCHHHhcCHHHHHH
Confidence 99999999999999999999999999999 667899999 999999999999999999 999999998754 2233444
Q ss_pred HH
Q 048695 630 YF 631 (846)
Q Consensus 630 ~f 631 (846)
.|
T Consensus 234 ~~ 235 (255)
T PRK11231 234 VF 235 (255)
T ss_pred Hh
Confidence 44
No 102
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-35 Score=307.06 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=167.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+++|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 5 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 78 (237)
T PRK11614 5 MLSFDKVSA-HYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78 (237)
T ss_pred EEEEEeEEE-eeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHH
Confidence 799999999 775 4679999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQL-GLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|+..+++. ||+||+.++.... ..++..++++++++.+ ++.+..++.+++||+
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH
Confidence 249999999988888 9999998864321 1233345678888888 588888889999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+.|||+++|+ +|++++.|+++
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 222 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLE-NGHVVLEDTGD 222 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCcHHHHHhhCCEEEEEe-CCEEEeeCCHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 99999999874
No 103
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-34 Score=301.69 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=162.3
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|+ ++.+|+++|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHK-SFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEE-EEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 46889999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.++|++|++.+++. |++||+.+...... +.+.++..++++++++.+||++..++.+.+||+ .
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 248999999988888 99999998653211 233445566789999999999999999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
+|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.++||++++|+ +|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tvi~~sh~~~~~~~~~d~i~~l~-~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMD-DGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCcC
Confidence 99999999999999999999999999999 567899999 999999999999999999 8864
No 104
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.9e-35 Score=301.27 Aligned_cols=178 Identities=22% Similarity=0.246 Sum_probs=156.7
Q ss_pred EEeceeeeeeccCCCCC-cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eEEE
Q 048695 423 VFEGLTFSRYEEGSNES-TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LLLC 491 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~ig 491 (846)
+++||++ .|+ + +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.+|
T Consensus 1 ~~~~l~~-~~~-----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 1 RIENISF-SYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred CcccEEE-EeC-----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE
Confidence 3678998 775 3 679999999999999999999999999999999999975 999999999 3599
Q ss_pred EEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 492 YVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 492 yv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
|++|++. .+.. ||+||+.+....+ . +..++++++++.+||.+..++++++||+ .+|++
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9999964 3345 9999998865432 1 1125688999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEC
Confidence 9999999999999999999999999 567999999 999999999999999999 99874
No 105
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=310.32 Aligned_cols=192 Identities=19% Similarity=0.214 Sum_probs=169.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ ++.+|+|+|+++++|++++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSV-RLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEE-EeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 589999999 776 4679999999999999999999999999999999999975 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------C--
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------H-- 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------~-- 552 (846)
+.+||++|++.+++. ||+||+.+..... ....++..++++++++.+||.+..++.+++||+ .
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 248999999888777 9999999864322 122334456789999999999999999999998 4
Q ss_pred -----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 -----CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 -----~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~ 227 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH-QGRLVADGTPAE 227 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE-CCEEEeeCCHHH
Confidence 899999999999999999999999999994367899999 999999999999999999 999999988743
No 106
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.2e-34 Score=303.48 Aligned_cols=196 Identities=17% Similarity=0.257 Sum_probs=171.5
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------eEEEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------LLLCY 492 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------~~igy 492 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.++|
T Consensus 1 l~l~~v~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSK-RFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 (223)
T ss_pred CEEEeEEE-EEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE
Confidence 46889999 775 4679999999999999999999999999999999999975 999999999 36899
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
++|++.+++. |++||+.+....+ +.+ .++++++++.+||++..++.+++||+ .+|++|+
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999988888 9999998876543 111 24678899999999999999999997 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
|||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++.+.|||+++|+ +|+++..|++.+ ...+.+.|..
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i~~~~~~~~-~~~~~~~~~~ 220 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSF-PEQGITVILSSHILSEVQQLADHIGIIS-EGVLGYQGKINK-SENLEKLFVE 220 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHhcCEEEEEe-CCEEEEecChhh-cccHHHHHHH
Confidence 99999999999999999999999 667899999 999999999999999999 999999998854 2334455543
No 107
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=311.80 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=168.7
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------------- 487 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------------- 487 (846)
..+|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 26 ~~~~~~~-~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILK-KTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhh-hcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 5678888 675 6789999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++.+++. ||+||+.+....+ +.+.++..++++++++.+||.+..++.+++||+
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 148999999988888 9999999876443 233445556789999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999999999994455899999 999999999999999999 99999999763
No 108
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-34 Score=301.53 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=161.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++||++ .|+++ .+.+++|+++|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 l~~~~v~~-~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGK-RYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeE-EccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 68899999 77521 112579999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.++|++|++.+++. ||+||+.+....+ ..+..+..++++++++.+||++..++.+++||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 148999999988888 9999999876543 223344456788999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.. +|++++|+ +|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~-~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMK-DGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEe-CCEec
Confidence 8999999999999999999999999999994445899999 999998855 79999999 99875
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=310.38 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=169.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 10 ~~l~i~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSF-RVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEE-EEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 3799999999 775 4689999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|+..+++. ||.||+.+........ ...+++..++++++++.++|++..++++++||+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 258999999888888 9999998753211100 111233456789999999999989999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.+.||++++|+ +|+++..|++++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~-~G~i~~~~~~~~ 234 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR-GGEMIAQGTPAE 234 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEEecCHHH
Confidence 9999999999999999999999999999994445899999 999999999999999999 999999998754
No 110
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=312.80 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=168.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|++ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ml~~~~l~~-~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSY-SYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEE-EcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 478999999 7741 3569999999999999999999999999999999999975 999999998
Q ss_pred -eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++. .+.. ||+||+.+..... +.+.++..++++++++.+||++..++.+++||+
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 24899999975 3556 9999999875432 345556667899999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+++.|+++ ++.|.|||+ ||+.+++ +.|||+++|+ +|++++.|+++
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l-~~~g~til~~tH~~~~~-~~~d~v~~l~-~G~i~~~g~~~ 220 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEEL-HDADRIIVMD-RGKIVLEGEPE 220 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHH-hhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999 667999999 9999998 5699999999 99999999874
No 111
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=311.34 Aligned_cols=190 Identities=19% Similarity=0.248 Sum_probs=168.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
||+++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ml~~~~l~~-~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWF-RYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEE-EcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 488999999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccCcC-CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDAH-QTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~~-~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+||++|++.. ... |+.||+.+....+ +.+.++..++++++++.+||.+..++.+++||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 148999999753 345 8999998865433 334455556789999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|.|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 221 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRI-VAQGNHVIISSHDIDLIYEISDAVYVLR-QGQILTHGAPG 221 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999999 566899999 999999999999999999 99999999873
No 112
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=314.71 Aligned_cols=196 Identities=15% Similarity=0.229 Sum_probs=170.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----e------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----L------ 488 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----~------ 488 (846)
.+|+++||++ .|+.....++.+|+|||+++++||++||+|+||||||||+++|+|+.+ .+|+|.++| +
T Consensus 20 ~~l~~~nl~~-~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYC-VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEE-EeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4799999999 785321123569999999999999999999999999999999999985 999999987 1
Q ss_pred ------------------EEEEEeccC--cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccC
Q 048695 489 ------------------LLCYVEKLD--AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVG 547 (846)
Q Consensus 489 ------------------~igyv~Q~~--~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~ 547 (846)
.+|||+|++ .+++.||+||+.++.... +.+.++..++++++++.+||. +..++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 379999986 344449999999875432 345556667899999999997 68899999
Q ss_pred CccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 548 SLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 548 ~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
+||| .+|++|||||||+|||+.++..+++.|+++ +++|+|||+ ||+++++.+.|||+++|+ +|+
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l-~~~g~TiiivtHd~~~~~~~adri~vl~-~G~ 253 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA-KANNKTVFVITHTMEHVLEVADEVIVMD-KGK 253 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEE-CCE
Confidence 9998 999999999999999999999999999999 667999999 999999999999999999 999
Q ss_pred EEEecCCC
Q 048695 614 QAYFGPRG 621 (846)
Q Consensus 614 ~v~~G~~~ 621 (846)
++..|+++
T Consensus 254 i~~~g~~~ 261 (320)
T PRK13631 254 ILKTGTPY 261 (320)
T ss_pred EEEeCCHH
Confidence 99999874
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=304.82 Aligned_cols=190 Identities=19% Similarity=0.186 Sum_probs=169.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+
T Consensus 2 ~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINC-FYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEE-EEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 689999999 775 4679999999999999999999999999999999999985 9999999882
Q ss_pred -------EEEEEeccCcCCCC-CHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--------
Q 048695 489 -------LLCYVEKLDAHQTY-SVSESIQFS-AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 489 -------~igyv~Q~~~~~~~-TV~E~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------- 551 (846)
.++|++|++.+++. ||+||+.+. ...+ +.+.++..++++++++.+||++..++.+++||+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 37999999999988 999999753 2222 233445556789999999999999999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|+|+ ||+.+++.+++|++++|+ +|++++.|+++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~~~d~i~~l~-~g~i~~~~~~~ 226 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYME-NGHIVEQGDAS 226 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 99999998763
No 114
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-34 Score=300.47 Aligned_cols=182 Identities=21% Similarity=0.268 Sum_probs=158.0
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------eE
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------LL 489 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~~ 489 (846)
+++|+++ .|++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 1 ~~~~l~~-~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSF-SYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEE-ecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 3678888 6751 12679999999999999999999999999999999999985 999999998 35
Q ss_pred EEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 490 LCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 490 igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
++|++|++. .++. ||+||+.+....+ +.+.++..++++++++.+||.+..++++++||+ .+|
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 899999974 3566 9999998865433 233444556789999999999989999999998 899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~-~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLE-DGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCC
Confidence 999999999999999999999999999 556999999 999999999999999999 774
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-34 Score=309.84 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=169.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+. ++.+|+|||+++++||+++|+|+||||||||+|+|+|+.+ ++|+|.++|
T Consensus 3 ~l~~~~l~~-~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCY-SYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEE-EeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 689999999 7741 3469999999999999999999999999999999999975 999999999
Q ss_pred eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+|||+|++. .+.. ||+||+.+..... +.+.++.+++++++++.+||.+..++.+++||+ .
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 25899999963 3335 9999998865432 344555567889999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.|||+++|+ +|++++.|+++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~-~G~i~~~g~~~ 223 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD-KGRIVAYGTVE 223 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeEEEECCHH
Confidence 999999999999999999999999999994445899999 999999999999999999 99999999874
No 116
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.6e-34 Score=300.77 Aligned_cols=190 Identities=21% Similarity=0.173 Sum_probs=164.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|++. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 5 ~~l~~~~l~~-~~~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKK-SVGQG-EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEE-EccCC-CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4799999999 77521 011359999999999999999999999999999999999975 999999998
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+||++|++.+++. ||+||+.+....+ ..+.++.+++++++++.+||.+..++.+++||+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 148999999988888 9999999865443 233455567899999999999989999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++. .+|++++|+ +|+++.
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~-~g~i~~ 226 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLV-NGQLQE 226 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEE-CCEEEe
Confidence 8999999999999999999999999999994445899999 99999875 599999999 999864
No 117
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-34 Score=304.23 Aligned_cols=188 Identities=18% Similarity=0.186 Sum_probs=164.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
|+++||++ .|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNV-YYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEE-EeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 46899999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLG-LLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~v~~lSg-------------~ 552 (846)
+.+||++|++.+++. |++||+.+....+ +.. ..+.++++++.++ +.+..++.+++||+ .
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 258999999988988 9999999875433 111 2234678888887 67888999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|+.++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~g~i~~~~~~~~ 218 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVME-RGRVVASGAGDE 218 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999999994335899999 999999999999999999 999999998754
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-34 Score=310.67 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=170.1
Q ss_pred eEEEEeceeeeeeccCCC-CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 420 VTFVFEGLTFSRYEEGSN-ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~-~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
.+++++||++ .|+...+ .++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~~l~~~~l~~-~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSY-KYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEE-EcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 4799999999 7752211 23579999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ---LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+||++|++. .+.. ||.|++.|..... +.++++.+++++++++.+||++..++++++||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 35899999974 2334 9999999876533 344556667899999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+++++.. ||++++|+ +|+++..|+++
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~-~G~i~~~g~~~ 229 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMD-SGKVVMEGTPK 229 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEE-CCEEEEecCHH
Confidence 9999999999999999999999999999994445999999 999999876 99999999 99999999874
No 119
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-34 Score=314.70 Aligned_cols=199 Identities=15% Similarity=0.119 Sum_probs=173.8
Q ss_pred eEEEEeceeeeeeccCCC-----CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSN-----ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~-----~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------ 487 (846)
.+|+++||++ .|+...+ +.+.+|+|||+++++||++||+|+||||||||+++|+|+++ .+|+|.++|
T Consensus 4 ~~l~v~nl~~-~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKK-HYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEE-EEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 4799999999 7752111 13579999999999999999999999999999999999985 999999999
Q ss_pred ---------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---
Q 048695 488 ---------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--- 551 (846)
+.+|||+|++ .+.|. ||.+++........ ...+++.++++.++|+.+||. +..++++++|||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~ 160 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQR 160 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHH
Confidence 3599999997 57888 99999987654431 245566677899999999997 478999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|++||||+|||..++.+|+++|++++++.|.|+|+ |||.+.+.+++|++++|+ +|+++..|+.
T Consensus 161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~-~G~ive~g~~ 239 (327)
T PRK11308 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY-LGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCH
Confidence 8999999999999999999999999999995556999999 999999999999999999 9999999987
Q ss_pred CC
Q 048695 621 GS 622 (846)
Q Consensus 621 ~~ 622 (846)
++
T Consensus 240 ~~ 241 (327)
T PRK11308 240 EQ 241 (327)
T ss_pred HH
Confidence 43
No 120
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=281.08 Aligned_cols=194 Identities=21% Similarity=0.248 Sum_probs=179.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCe-------EEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVL-------LLCY 492 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~-------~igy 492 (846)
++.+.+++. .|.. ..+.+|+|||+++.+||.++++||||||||||||++||+. |..|+|.+||| .-|.
T Consensus 3 ~l~~~~~sl-~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergv 78 (259)
T COG4525 3 MLNVSHLSL-SYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78 (259)
T ss_pred eeehhheEE-ecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcccee
Confidence 577788888 6752 1356999999999999999999999999999999999998 59999999995 6799
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
|+|++.++|. ||.||+.|+.+++ ++++.++++.+.+.+..+||++..++.+-+||| .+|++|+
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 9999999999 9999999999998 899999999999999999999999999999998 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-CCEEEEecCCC
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-EGHQAYFGPRG 621 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-~G~~v~~G~~~ 621 (846)
||||+++||.-+++++-++|-++.++.|+.+++ ||+.+|+.-+++|+++|++ .||++..-+++
T Consensus 156 LDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999997888999999 9999999999999999984 57998877773
No 121
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=310.44 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=168.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|++ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~l~~-~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKY-SYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEE-EeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 478999999 7741 3569999999999999999999999999999999999986 999999999
Q ss_pred --eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+||++|++. .+.. ||+||+.+..... +..+++..+++.++++.+||.+..++++++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 24899999963 3334 9999998764322 234555667889999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|+++ +++|.|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~~til~vtH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 222 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMS-DGKIIKEGTPK 222 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999999 566999999 999999999999999999 99999999874
No 122
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=308.62 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=170.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+|+++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 6 ~~l~i~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTL-GYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEE-EEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 4799999999 786 4679999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++.+++. ||+||+.+......+. ....+...++++++++.+||++..++.+.+||+
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 258999999988888 9999998753211000 011233445789999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 230 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR-EGKIVAQGAPKE 230 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHH
Confidence 9999999999999999999999999999994345899999 999999999999999999 999999998754
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-34 Score=305.34 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=167.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G----- 487 (846)
..+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 10 ~~~l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNL-WYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEE-EeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 34799999999 775 4679999999999999999999999999999999999974 699999988
Q ss_pred ---------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 ---------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.+||++|++.+++.||+||+.+....+ +.+.++.+++++++++.+|+. +..++.+++||+
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 2489999998766569999999875443 234445556789999999984 557889999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.++|||+++|+ +|++++.|++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 237 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KK-DYTIVIVTHNMQQAARISDYTGFFL-MGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 54 789999 999999999999999999 9999999986
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
+
T Consensus 238 ~ 238 (258)
T PRK14268 238 R 238 (258)
T ss_pred H
Confidence 3
No 124
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-34 Score=310.26 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=167.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
.++++||++ .|++.....+++|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|+
T Consensus 2 ~l~~~~l~~-~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSY-TYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEE-EcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 489999999 775211112469999999999999999999999999999999999974 9999999981
Q ss_pred -----EEEEEeccC--cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---------
Q 048695 489 -----LLCYVEKLD--AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--------- 551 (846)
Q Consensus 489 -----~igyv~Q~~--~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--------- 551 (846)
.+||++|++ .+++.||+||+.+....+ ..+.++..++++++++.+||. +..++.+++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 389999986 334339999999875433 234455566789999999997 478999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+++|++++|+ +|+++..|+++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 230 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLE-KGKLVLSGKPK 230 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999999 567899999 999999999999999999 99999998864
No 125
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=320.34 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=187.8
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+..++++|++| +|+ ..++|+|||+++++||++||+|.||||||||+|+|+|.++ ++|+|.+||
T Consensus 6 ~~ll~~~~i~K-~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISK-SFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceE-EcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 34799999999 887 6899999999999999999999999999999999999985 999999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
..|+.|+|+..+.|+ ||.||+.++...+.+ .-+++++.+++..++|+.+|+....++++++||.
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 469999999999999 999999988766542 3467788888999999999996559999999997
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC-CCC-ChHH
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP-RGS-NHDI 626 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~-~~~-~~~~ 626 (846)
.+++||+||||||.|+......+.++++++ +++|.+||+ ||.++|++++|||+.+|+ +|+.+..++ .++ +.++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L-k~~Gv~ii~ISHrl~Ei~~i~DritVlR-DG~~v~~~~~~~~~~~~~ 237 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRL-KAQGVAIIYISHRLDEVFEIADRITVLR-DGRVVGTRPTAAETSEDE 237 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEcCcHHHHHHhcCEEEEEe-CCEEeeecccccCCCHHH
Confidence 899999999999999999999999999999 899999999 999999999999999999 999999999 455 5567
Q ss_pred HHHHHhh
Q 048695 627 ILDYFLL 633 (846)
Q Consensus 627 l~~~f~~ 633 (846)
+.+.+-.
T Consensus 238 lv~~MvG 244 (500)
T COG1129 238 LVRLMVG 244 (500)
T ss_pred HHHHhhC
Confidence 7776654
No 126
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.1e-34 Score=305.92 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=169.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.
T Consensus 5 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 5 KLNVIDLHK-RYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred cEEEeeeEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccc
Confidence 589999999 775 5689999999999999999999999999999999999985 9999999981
Q ss_pred --------------EEEEEeccCcCCCC-CHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCccC
Q 048695 489 --------------LLCYVEKLDAHQTY-SVSESIQFSAA-LRVGKTVNAMRRHIHVELVLNQLGLLPYS-NQLVGSLHY 551 (846)
Q Consensus 489 --------------~igyv~Q~~~~~~~-TV~E~l~f~a~-lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~v~~lSg 551 (846)
.++|++|++.+++. ||+||+.++.. .+ ...+++.++++.++++.+||.+.. ++.+++||+
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 38999999999998 99999987542 22 233455567889999999998864 888999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|+|||||+|||+.++..+.++|+++ ++.|+|||+ ||+.+++.++|||+++|+ +|++++.
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~ 233 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEE 233 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEe
Confidence 899999999999999999999999999999 667999999 999999999999999999 9999999
Q ss_pred cCCC
Q 048695 618 GPRG 621 (846)
Q Consensus 618 G~~~ 621 (846)
|+++
T Consensus 234 ~~~~ 237 (257)
T PRK10619 234 GAPE 237 (257)
T ss_pred CCHH
Confidence 8763
No 127
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-34 Score=298.46 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=160.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++. .|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 i~~~~l~~-~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRF-SYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEE-EeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 46889999 775 233 39999999999999999999999999999999985 999999999 358
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
||++|++.+++. ||+||+.+....+. .. .++.+++++++++.+||++..++.+.+||+ .+|++
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988988 99999987643221 11 233456789999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEEeecC
Confidence 99999999999999999999999994445899999 999999999999999999 99998654
No 128
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.7e-34 Score=307.08 Aligned_cols=208 Identities=18% Similarity=0.187 Sum_probs=175.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c---cceEEEcCe-------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F---TGSLNGNVL------- 488 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~---~G~I~~~G~------- 488 (846)
.+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ . +|+|.++|+
T Consensus 3 ~~l~~~nl~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAK-TFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEE-EeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 4799999999 775 5789999999999999999999999999999999999974 3 599999991
Q ss_pred ----------EEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-
Q 048695 489 ----------LLCYVEKLDAHQTY-SVSESIQFSAALRVGK-----TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY- 551 (846)
Q Consensus 489 ----------~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg- 551 (846)
.++|++|++.+++. ||+||+.+......+. ....++.+++++++++.+||.+..++.+++||+
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 37999999988898 9999998764211000 111234456789999999999999999999997
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.||++++|+ +|++++.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~-~g~i~~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeC
Confidence 9999999999999999999999999999994445899999 999999999999999999 99999999
Q ss_pred CCCC-ChHHHHHHHhhC
Q 048695 619 PRGS-NHDIILDYFLLI 634 (846)
Q Consensus 619 ~~~~-~~~~l~~~f~~~ 634 (846)
++++ ....+.+.|...
T Consensus 236 ~~~~~~~~~~~~~~~~~ 252 (262)
T PRK09984 236 SSQQFDNERFDHLYRSI 252 (262)
T ss_pred CHHHhccHHHHHHHhhh
Confidence 8864 223445555554
No 129
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5e-34 Score=303.43 Aligned_cols=189 Identities=20% Similarity=0.193 Sum_probs=166.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-----cceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-----TGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-----~G~I~~~G------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ . +|+|.++|
T Consensus 1 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNL-FYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEE-EEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 478999999 775 4579999999999999999999999999999999999974 6 99999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.+||++|+..+++.|++||+.+....+. ..+.++..++++++++.+||. +..++.+++||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred cchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 24899999987765699999998765431 123455567889999999998 778999999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.++|+++ ++ ++|||+ ||+.+++.+++|++++|+ +|+++..|++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 227 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KK-KYTIVIVTHNMQQAARISDRTAFFY-DGELVEYGPT 227 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-Hh-cCeEEEEecCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 55 489999 999999999999999999 9999999986
No 130
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-34 Score=345.35 Aligned_cols=297 Identities=18% Similarity=0.184 Sum_probs=234.9
Q ss_pred CCcccccccccCCCcceEeCCCCCCCChhHHHHHHhcCHhHHHHHHHHhhhhhhhhhhhHHhhhhhcccccCCccccccc
Q 048695 1 MESNEFLEAIIAGAGSKYIEPERTPLTIDEIIARYRVSDHYKDVMRIVNDDDKKYLIGIVVAKLSTKIAHSGGIESTRRE 80 (846)
Q Consensus 1 ~d~ADFL~~vt~~~~~~~~~~~~~P~t~~efa~af~~S~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (846)
.|+|||+.++++.++.. +...+.+.+++.+.|++|+.+++..++++....+. .+..+
T Consensus 269 ~n~ad~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----------------~~~~~---- 325 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGS---ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA----------------GGLVK---- 325 (617)
T ss_pred CChHHHHHHHhhcCccc---ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccc----------------ccccc----
Confidence 37899999999754421 11234567889999999999987766554221100 00000
Q ss_pred cccccccCCCCCCccccHHHHHHHHHHHHHHHHhhccccchhhHHH----HHH---------------------------
Q 048695 81 DEYHTIWGQFQRPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTL----CLQ--------------------------- 129 (846)
Q Consensus 81 ~~~~~~~~~~~s~y~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~~~----~~~--------------------------- 129 (846)
.....+.++|..+||+|+++|++|+++..+||+..+..+.+. .++
T Consensus 326 ----~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~ 401 (617)
T TIGR00955 326 ----DSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLT 401 (617)
T ss_pred ----ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 000113456889999999999999999999999655322111 110
Q ss_pred ---HHHH-HHHHHHhhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceee
Q 048695 130 ---QESS-NHVNLTLHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQY 205 (846)
Q Consensus 130 ---~~~~-~~l~~~~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f 205 (846)
..++ ..++....+|++|+||+ ..++|++++|++|+.++++|+.++.+++|++|+|||+|+++++ ++||+|
T Consensus 402 ~~~f~~~~~~~~~f~~er~v~~rE~----~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~--~~f~~f 475 (617)
T TIGR00955 402 NMTFQNVFPVINVFTAELPVFLRET----RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGA--THFLTF 475 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccH--HHHHHH
Confidence 0111 13566678999999999 9999999999999999999999999999999999999999875 789999
Q ss_pred ehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhh
Q 048695 206 LVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYC 285 (846)
Q Consensus 206 ~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~ 285 (846)
++ ++++..+++.++++++++++|+...|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++
T Consensus 476 ~l-------~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~ 548 (617)
T TIGR00955 476 LF-------LVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLL 548 (617)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 88 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCcc--------cccccc---cccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 048695 286 KCQFNEGYTDPCTN--------FLSVTN---SQQIAKRPWLPYAILLGWTVLANFLALLGRRN 337 (846)
Q Consensus 286 ~nef~~~~~~~C~~--------~~g~~~---~~~~~~~~w~~~~il~~~~~~~~~~~~~~~~~ 337 (846)
+|||.+.....|.+ ..|... ++++.++.|++++++++++++|.+++++++++
T Consensus 549 ~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~ 611 (617)
T TIGR00955 549 INQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611 (617)
T ss_pred HHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997532224531 122222 47777899999999999999999999999975
No 131
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.4e-34 Score=299.22 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=160.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|++. ..+..+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ~l~~~~v~~-~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSV-SFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeE-eccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 378999999 77521 011379999999999999999999999999999999999985 999999998
Q ss_pred ---eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCccC--------
Q 048695 488 ---LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIH-VELVLNQLGLL-PYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~-v~~~l~~l~L~-~~~~~~v~~lSg-------- 551 (846)
+.+||++|++ .+.+. ||+||+.+......+ ...++..+. ++++++.++|. +..++.+++||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 1489999997 45667 999999887544311 112222223 36899999995 678999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.||++++|+ +|+++..|
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~g 228 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY-AGKIVEEG 228 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe-CCEEEecC
Confidence 9999999999999999999999999999994444899999 999999999999999999 99998654
No 132
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=301.62 Aligned_cols=189 Identities=21% Similarity=0.253 Sum_probs=165.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ ++. .|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 1 ~l~~~~l~~-~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 72 (232)
T PRK10771 1 MLKLTDITW-LYH-----HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP 72 (232)
T ss_pred CeEEEEEEE-EEC-----Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhcc
Confidence 478999999 775 222 38999999999999999999999999999999985 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. |+.||+.+...... . ..+...++++++++.+||++..++.+++||+ .+|+
T Consensus 73 i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 73 VSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred EEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999998 99999987532110 1 1233456789999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.+|++++|+ +|++++.|+++
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i~~~g~~~ 215 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA-DGRIAWDGPTD 215 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999994445899999 999999999999999999 99999999864
No 133
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.5e-34 Score=298.90 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=158.6
Q ss_pred EeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------eEEEEEec
Q 048695 424 FEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------LLLCYVEK 495 (846)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------~~igyv~Q 495 (846)
++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++| +.++|++|
T Consensus 2 ~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTV-SYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred ccccee-EEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 578888 775 4679999999999999999999999999999999999974 999999999 45999999
Q ss_pred cCcCC--CC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEE
Q 048695 496 LDAHQ--TY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 496 ~~~~~--~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLl 558 (846)
++.+. .. ||+||+.+....+... ...+++..++++++++.+||++..++.+++||+ .+|++|+
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 97653 34 9999998864322100 012233456789999999999989999999998 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +| +++.|
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~-~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEc-Cc-EeecC
Confidence 99999999999999999999999 557899999 999999999999999998 76 55544
No 134
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.6e-34 Score=301.61 Aligned_cols=176 Identities=20% Similarity=0.228 Sum_probs=156.1
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------eEEEEEe-ccCcCCCC-CH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------LLLCYVE-KLDAHQTY-SV 504 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~~igyv~-Q~~~~~~~-TV 504 (846)
++++|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++| +.++|++ |++.+++. ||
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 567999999999999999999999999999999999997 5999999998 2589998 55667777 99
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHH
Q 048695 505 SESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGT 571 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~ 571 (846)
+|++.+....+ +...++..++++++++.+||.+..++.+++||+ .+|++|+|||||+|||+.++
T Consensus 113 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 113 IDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 99999876543 233455566788999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe-CCEEEecC
Confidence 99999999994445899999 999999999999999999 99998765
No 135
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.7e-34 Score=305.26 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=167.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
|+++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +
T Consensus 2 l~~~~l~~-~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSW-SAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEE-EEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 67899999 775 4689999999999999999999999999999999999985 999999999 2
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
.++|++|++.+++. ||+||+.++...... .....++..++++++++.++|.+..++.+++||+ .+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 48999999877777 999999885321100 0112233445789999999999999999999998 89
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|++++|||||+|||+.++..+.+.|+++ +++|.|||+ ||+.+++.+.||++++|+ +|+++..|+.++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 223 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVREL-AATGVTVVAALHDLNLAASYCDHVVVLD-GGRVVAAGPPRE 223 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCCEEEecCHHH
Confidence 9999999999999999999999999999 667899999 999999999999999999 999999998754
No 136
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-34 Score=313.01 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=171.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-----ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-----FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-----~~G~I~~~G-------- 487 (846)
+|+++||++ .|+.. .+...+|+||||++++||++||+|+||||||||+++|+|+++ ++|+|.++|
T Consensus 3 ~L~v~~l~~-~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSV-HFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEE-EECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999 77521 122579999999999999999999999999999999999974 789999999
Q ss_pred --------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCccC--
Q 048695 488 --------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY-- 551 (846)
Q Consensus 488 --------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg-- 551 (846)
+.+|||+|++ .+.|. ||.+++........ +.++++.+++++++|+.+||.+ ..++.+++|||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 1499999997 47788 99999877654431 2345666788999999999974 56889999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|++||||+|||+.++.+++++|++++++.|.|+|+ |||++++.+++||+++|+ +|+++..|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~-~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY-AGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECC
Confidence 8999999999999999999999999999995557999999 999999999999999999 999999998
Q ss_pred CCC
Q 048695 620 RGS 622 (846)
Q Consensus 620 ~~~ 622 (846)
+++
T Consensus 238 ~~~ 240 (326)
T PRK11022 238 AHD 240 (326)
T ss_pred HHH
Confidence 743
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-34 Score=305.69 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=169.6
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+.+++++|+++ .|++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 5 ~~~l~i~~l~~-~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 5 NSIIVFKNVSF-QYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CceEEEEEEEE-EcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34799999999 7752 12469999999999999999999999999999999999985 999999999
Q ss_pred --eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
+.+||++|++. +++. |+++|+.+..... ..+.++..++++++++.+|+.+..++.+++||+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 35899999974 6677 9999998875432 234455566789999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.. +||+++|+ +|++++.|++++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~-~G~i~~~g~~~~ 228 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMN-KGTVYKEGTPTE 228 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEE-CCEEEEecCHHH
Confidence 9999999999999999999999999999994345899999 999999875 99999999 999999998743
No 138
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-34 Score=308.01 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=169.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-cc---ceEEEcC--------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FT---GSLNGNV-------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~---G~I~~~G-------- 487 (846)
.+++++|+++ .|++ .++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+ |+|.++|
T Consensus 4 ~~l~i~~l~~-~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSF-TYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEE-EcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 3799999999 7752 13569999999999999999999999999999999999984 55 9999999
Q ss_pred ----eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 ----LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+||++|++. .++. ||+||+.+....+ +.++++..++++++++.+||++..++++.+||+
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 35899999974 5666 9999999865432 345566667899999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++ ..||++++|+ +|+++..|+++
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~-~G~i~~~g~~~ 228 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLD-DGKLLAQGSPV 228 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999999999994445999999 9999988 5799999999 99999999873
No 139
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-34 Score=302.18 Aligned_cols=191 Identities=19% Similarity=0.204 Sum_probs=165.8
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G----- 487 (846)
|++++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 4 ~~~l~~~~l~~-~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSF-FYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEE-EEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 45799999999 775 467999999999999999999999999999999999985 3789999998
Q ss_pred ---------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC---
Q 048695 488 ---------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg--- 551 (846)
+.+||++|++.+++.||+||+.++...+. ..+.++..++++++++.+||.+ ..++.+++||+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 24899999987765699999998764431 1123444567889999999853 46788999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.++||++++|+ +|+++..|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~tH~~~~~~~~~d~v~~l~-~G~i~~~g~~ 232 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KA-RYTIIIVTHNMQQAARVSDVTAFFY-MGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCeEEEEEecHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 55 789999 999999999999999999 9999999876
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-34 Score=305.56 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=167.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .|++ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 6 ~~l~~~nl~~-~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSF-SYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEE-EcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 4799999999 7741 14679999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++. .++. ||+||+.+..... ..+.++..++++++++.+||++..++.+++||+
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 35899999973 5667 9999999875432 234455566789999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..++++|+++ +++ ++|||+ ||+.+++. .||++++|+ +|+++..|+++
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~~~tiii~sH~~~~~~-~~d~v~~l~-~G~i~~~g~~~ 227 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDL-RKTRKKTLISITHDMDEAI-LADKVIVFS-EGKLIAQGKPK 227 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HHhcCcEEEEEEechhHHh-hCCEEEEEE-CCEEEEecCHH
Confidence 899999999999999999999999999999 544 589999 99998885 799999999 99999998863
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.8e-34 Score=305.05 Aligned_cols=198 Identities=18% Similarity=0.192 Sum_probs=169.2
Q ss_pred EEEEeceeeeeeccCC----CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGS----NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~----~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------- 487 (846)
+++++||++ .|+... .+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTH-TYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEE-EeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 589999999 774210 124679999999999999999999999999999999999985 999999998
Q ss_pred -------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg----- 551 (846)
+.+||++|++ .+.+. ||+||+.+..... .....++..++++++++.+||. +..++.+++||+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 1499999996 45677 9999998765322 1233445556789999999996 688999999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+++|++++|+ +|+++..|++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 237 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe-CCEEEEECCHHH
Confidence 8999999999999999999999999999994445899999 999999999999999999 999999998743
No 142
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.5e-34 Score=298.03 Aligned_cols=194 Identities=25% Similarity=0.370 Sum_probs=166.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC---------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV--------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G--------- 487 (846)
.+.++|+++ ++++. +..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|
T Consensus 3 ~~~~~~~~~-~~~~~-~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGL-KAKNW-NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred cceeeccee-eeecC-ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 477899999 77521 114789999999999999999999999999999999999964 899999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCccC-------------C
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVEL-VLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.++|++|++.+++. ||+||+.+.+....+.....+...+++++ .++.+++++..++.+++||+ .
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 469999999999998 99999998765442222222333345666 89999999999999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecCh-hhHHhhcCEEEEEccCCEEEEec
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPY-ARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~-~~i~~~~D~vllL~~~G~~v~~G 618 (846)
+|++|+|||||+|||+.++..+.+.|+++ ++.|.|+|+ ||+. +++.+.||++++|+ +|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~-~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQL-ARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 99999999999999999999999999999 666899999 9998 68999999999999 99998765
No 143
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-34 Score=307.25 Aligned_cols=195 Identities=18% Similarity=0.139 Sum_probs=166.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c--------cceEEEcC----
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F--------TGSLNGNV---- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~--------~G~I~~~G---- 487 (846)
||+++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++ . +|+|.++|
T Consensus 1 ml~~~nl~~-~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHV-ARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEE-EEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 488999999 775 5689999999999999999999999999999999999985 6 89999999
Q ss_pred --------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------
Q 048695 488 --------LLLCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------ 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------ 551 (846)
+.++|++|++..++. ||+||+.+....+.. .....++..++++++++.+||.+..++.+++||+
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 247999999876666 999999886421110 0111233456789999999999999999999998
Q ss_pred ------C----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 ------H----------CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 ------~----------~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
. +|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~-~G~i 233 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA-DGAI 233 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCeE
Confidence 4 899999999999999999999999999994334899999 999999999999999999 9999
Q ss_pred EEecCCCC
Q 048695 615 AYFGPRGS 622 (846)
Q Consensus 615 v~~G~~~~ 622 (846)
+..|++++
T Consensus 234 ~~~g~~~~ 241 (272)
T PRK13547 234 VAHGAPAD 241 (272)
T ss_pred EEecCHHH
Confidence 99998754
No 144
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-34 Score=306.90 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=169.1
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|++ ..++.+|+|||+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~~l~~~~l~~-~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 3 KILEVENLVF-KYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred ceEEEEEEEE-EcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH
Confidence 3799999999 7752 113469999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++. .++. ||.||+.++...+ +.++++..++++++++.+||.+..++.+.+||+
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 35899999974 5666 9999998865432 234555567889999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|++++++.|.|||+ ||+.+++. .+|++++|+ +|+++..|+++
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~-~G~i~~~g~~~ 225 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK-AGEIIKEAAPS 225 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEEEEeCCHH
Confidence 8999999999999999999999999999994445999999 99999986 599999999 99999999873
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-33 Score=301.38 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=168.0
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL------------ 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~------------ 488 (846)
++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+
T Consensus 1 i~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTK-RFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEE-EeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 46899999 775 4679999999999999999999999999999999999985 9999999881
Q ss_pred -------------EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---
Q 048695 489 -------------LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--- 551 (846)
Q Consensus 489 -------------~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--- 551 (846)
.++|++|++.+++. ||+||+.++.... .+...++..++++++++.+||.+..++.+.+||+
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 38999999988888 9999999864321 1234455566789999999999999999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|+|+ ||+.+++.+++||+++|+ +|+++..|+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD-KGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCH
Confidence 8999999999999999999999999999994445899999 999999999999999999 9999999876
No 146
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=300.94 Aligned_cols=196 Identities=14% Similarity=0.163 Sum_probs=174.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC--------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV-------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G-------- 487 (846)
|+++||+. .|.. .++..++++||||++++||++||+|.||||||||.++|.|++| .+|+|.++|
T Consensus 2 L~v~nL~v-~f~~-~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSV-SFPT-DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEE-EEec-CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 78999999 6642 2224689999999999999999999999999999999999985 679999999
Q ss_pred --------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHcCCCc---ccccccCCccC-
Q 048695 488 --------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTV-NAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY- 551 (846)
Q Consensus 488 --------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg- 551 (846)
+.|+|++|++ .+.|. ||.+.+.-..+.+. .. +++|..+++.++|+.+||.+ ..+.++.+|||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGG 157 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGG 157 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCc
Confidence 5899999996 67888 99999988776652 22 46677889999999999986 67899999999
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+.||||++||...+.+|+++|++++++.|.++|+ |||+..+.++||||++|. .|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY-aG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY-AGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE-CcEEEEeC
Confidence 9999999999999999999999999999997778999999 999999999999999999 99999999
Q ss_pred CCCC
Q 048695 619 PRGS 622 (846)
Q Consensus 619 ~~~~ 622 (846)
++++
T Consensus 237 ~~~~ 240 (316)
T COG0444 237 PVEE 240 (316)
T ss_pred CHHH
Confidence 9854
No 147
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=301.18 Aligned_cols=191 Identities=18% Similarity=0.193 Sum_probs=167.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKV-SFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEE-EEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 589999999 775 4679999999999999999999999999999999999973 599999998
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY------ 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg------ 551 (846)
+.+||++|++.+++. ||+||+.++...+. ...+.++..++++++++.+||.+ ..++.+.+||+
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 358999999888888 99999998754321 11133455567899999999853 57889999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|+|+ ||+.+++.+.||++++|+ +|+++..|+++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 230 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KK-DMTIVLVTHFPQQAARISDYVAFLY-KGQIVEWGPTR 230 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhcCEEEEEE-CCeEEEECCHH
Confidence 899999999999999999999999999998 54 789999 999999999999999999 99999998863
No 148
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=301.37 Aligned_cols=190 Identities=18% Similarity=0.137 Sum_probs=165.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 6 ~~l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNL-FYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEE-EeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 4799999999 775 4679999999999999999999999999999999999975 389999988
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC----CcccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGL----LPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L----~~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.+....+. ....++.+++++++++.+++ .+..++.+++||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 24899999987773499999998754331 12334455678899999998 4567889999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..++++|+++ ++ +.|||+ ||+.+++.+++||+++|+ +|+++..|++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~ 233 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KE-SYTIIIVTHNMQQAGRISDRTAFFL-NGCIEEESST 233 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 54 689999 999999999999999999 9999999886
No 149
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.1e-34 Score=300.48 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=165.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcC-----------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNV----------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G----------- 487 (846)
|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+. |.+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHV-SVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEE-EEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 46899999 775 467999999999999999999999999999999999994 5999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC----CCCHHHHHHHHHHHHHHcCCC-cccccccC-CccC-------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK----TVNAMRRHIHVELVLNQLGLL-PYSNQLVG-SLHY------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~-~lSg------- 551 (846)
..++|++|++.+++. |++|++.+........ ..+.++..++++++++.+||. +..++.++ +||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 128999999988998 9999998865432110 112334456789999999997 57788887 5998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEEEEecCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++... ||++++|+ +|+++..|++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tvi~vsH~~~~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL-REPDRSFLIITHYQRLLNYIKPDYVHVLL-DGRIVKSGDV 229 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH-HHCCcEEEEEEecHHHHHhhcCCeEEEEe-CCEEEEecCH
Confidence 999999999999999999999999999999 667899999 9999999998 89999999 9999999876
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-33 Score=298.93 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=168.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 i~i~~l~~-~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i 74 (237)
T TIGR00968 1 IEIANISK-RFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74 (237)
T ss_pred CEEEEEEE-EEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCE
Confidence 46889999 775 4679999999999999999999999999999999999985 999999998 358
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. |++||+.+....+ +.+..+..++++++++.++|.+..++.++++|+ .+|++
T Consensus 75 ~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 75 GFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988888 9999999876543 233444556789999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.||++++|+ +|++++.|+.
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEEEEecCH
Confidence 99999999999999999999999993334899999 999999999999999999 9999999986
No 151
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.5e-33 Score=303.25 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=169.1
Q ss_pred EEEEeceeeeeeccCC----CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGS----NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~----~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------- 487 (846)
+|+++||++ .|+... .+++.+|+|+|+++++||+++|+|||||||||||++|+|+++ .+|+|.++|
T Consensus 4 ~l~~~~l~~-~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSK-TFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEE-EecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 699999999 775211 113579999999999999999999999999999999999985 999999998
Q ss_pred ----eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--------
Q 048695 488 ----LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------- 551 (846)
+.+||++|++. +.+. ||.|++.+....+. ....++..++++++++.+||. +..++.+.+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 25999999874 5677 99999998765431 223445556789999999994 678889999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 235 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEVVERGSTA 235 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEEecCCHH
Confidence 8999999999999999999999999999994445899999 999999999999999999 99999988764
No 152
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-33 Score=310.58 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=172.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c---cceEEEcC--------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F---TGSLNGNV-------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~---~G~I~~~G-------- 487 (846)
.+|+++||++ .|+. .++...+|+|||+++++||+++|+|+||||||||+++|+|+.+ . +|+|.++|
T Consensus 11 ~~L~i~~l~~-~~~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 11 ALLDVKDLRV-TFST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred ceEEEeCeEE-EEec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 4799999999 7742 1223579999999999999999999999999999999999985 4 99999999
Q ss_pred --------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCccC--
Q 048695 488 --------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY-- 551 (846)
Q Consensus 488 --------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg-- 551 (846)
+.++||+|++ .+.|. |+.+++......+. +.++++..+++.++|+.+||.+ ..++.+++|||
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 1599999997 67888 99999987655432 2455666778999999999975 34778999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|++||||+|||+.++..++++|++++++.|.|+|+ |||++.+.+++||+++|+ +|+++..|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~-~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY-AGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEECC
Confidence 9999999999999999999999999999995556999999 999999999999999999 999999998
Q ss_pred CCC
Q 048695 620 RGS 622 (846)
Q Consensus 620 ~~~ 622 (846)
+++
T Consensus 246 ~~~ 248 (330)
T PRK09473 246 ARD 248 (330)
T ss_pred HHH
Confidence 754
No 153
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-34 Score=332.04 Aligned_cols=195 Identities=18% Similarity=0.237 Sum_probs=173.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC---------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV--------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G--------- 487 (846)
.+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 4 ~~l~~~nl~~-~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITK-TFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEE-EeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 3799999999 786 4679999999999999999999999999999999999975 699999998
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+|||+|++.+++. ||+||+.++...+.....+.++..++++++++.+||.+..++++++||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 238999999888888 9999999875432111123445556789999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~~~tvi~~tH~~~~~~~~~d~v~~l~-~G~i~~~~~~~~ 229 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIR-DGRHIGTRPAAG 229 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCcHHHHHHhcCEEEEEE-CCEEeeeccccc
Confidence 899999999999999999999999999999 677999999 999999999999999999 999999999876
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-33 Score=297.49 Aligned_cols=189 Identities=22% Similarity=0.196 Sum_probs=168.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++|+++ .|+ ++.+++|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++| +.+
T Consensus 1 l~~~~l~~-~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i 74 (232)
T cd03300 1 IELENVSK-FYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV 74 (232)
T ss_pred CEEEeEEE-EeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce
Confidence 46889999 775 4679999999999999999999999999999999999985 899999998 368
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
||++|++.+++. |++||+.+....+ +.+.....++++++++.+||.+..++.+.++|+ .+|++
T Consensus 75 ~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 75 NTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred EEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988888 9999999876543 233444556789999999999999999999998 99999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
|+|||||+|||+.++..+.+.|++++++.|+|||+ +|+.+++.+.|||+++|+ +|++++.|+.
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999994345899999 999999999999999999 9999998865
No 155
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-35 Score=285.38 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=185.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
|++++||++ .|+ ++.+|+++|+++++|.+|+|+|||||||||||.+++.+.+ ++|+|.++|
T Consensus 1 MI~i~nv~K-~y~-----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSK-SYG-----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhH-hhC-----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 578999999 787 7899999999999999999999999999999999999987 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
++++..-|+...... ||+|-+.|+...+. .+...+|.+..+++.++.++|+++.|+...+||| ++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 567788888777777 99999999854332 2445567778999999999999999999999998 89
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--ChHHHHHH
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NHDIILDY 630 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~~~l~~~ 630 (846)
.+.++||||.++||...+.++|+.||+++++.|+||++ -||.+.+..++|+|+-|+ +|+++..|++++ ..+.+.+.
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK-~G~vv~~G~~~eii~~~~L~ei 232 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK-NGKVVKQGSPDEIIQPEILSEI 232 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec-CCEEEecCCHHHhcCHHHHHHH
Confidence 99999999999999999999999999998889999999 999999999999999999 999999999987 55667777
Q ss_pred Hhh
Q 048695 631 FLL 633 (846)
Q Consensus 631 f~~ 633 (846)
|.-
T Consensus 233 ydm 235 (252)
T COG4604 233 YDM 235 (252)
T ss_pred hcC
Confidence 764
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-34 Score=300.59 Aligned_cols=187 Identities=18% Similarity=0.252 Sum_probs=164.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSY-SSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEE-EeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 589999999 775 4679999999999999999999999999999999999974 999999998
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~ 553 (846)
+.++|++|++.+++.||+||+.+....+ . +..++++++++.+||+ +..++.+.+||+ .+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 3589999998776559999998754322 1 1234678999999997 678999999998 99
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
|++|+|||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|++.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 217 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGILVEYAKTY 217 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEEEEeCCHH
Confidence 99999999999999999999999999994335899999 999999999999999999 99999998874
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=302.28 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=167.8
Q ss_pred CCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC---
Q 048695 417 VEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV--- 487 (846)
Q Consensus 417 ~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G--- 487 (846)
....+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 9 ~~~~~l~~~~l~~-~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 9 TAPSKIQVRNLNF-YYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CCCceEEEEEEEE-EeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3445799999999 775 4579999999999999999999999999999999999962 799999998
Q ss_pred -----------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-
Q 048695 488 -----------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY- 551 (846)
Q Consensus 488 -----------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg- 551 (846)
+.++|++|+..+++.||+||+.+....+. ..+.++..++++++++.+++. +..++.+++||+
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence 24899999987765699999998754321 234455556789999999984 457888999998
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+++|++++|+ +|+++..|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g 237 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQ-DYTVVIVTHNMQQAARCSDYTAFMY-LGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeC
Confidence 999999999999999999999999999999 54 689888 999999999999999999 99999999
Q ss_pred CCC
Q 048695 619 PRG 621 (846)
Q Consensus 619 ~~~ 621 (846)
+++
T Consensus 238 ~~~ 240 (260)
T PRK10744 238 NTD 240 (260)
T ss_pred CHH
Confidence 863
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=306.01 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=166.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
.++++||++ .|++.....+.+|+|+|+++++||+++|+||||||||||||+|+|+++ .+|+|.++|.
T Consensus 6 ~l~i~nl~~-~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSY-TYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEE-EeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 589999999 775211011359999999999999999999999999999999999985 9999999871
Q ss_pred ------EEEEEeccCcC-CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--------
Q 048695 489 ------LLCYVEKLDAH-QTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------- 551 (846)
Q Consensus 489 ------~igyv~Q~~~~-~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------- 551 (846)
.+||++|++.. ... ||+||+.+....+ +...++..++++++++.++|. +..++.+++||+
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 37999999632 234 9999999865432 233455556788999999994 688999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|++++.|+++
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 236 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH-EGKVISIGSPF 236 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 8999999999999999999999999999994445899999 999999999999999999 99999998863
No 159
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=301.82 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=169.7
Q ss_pred CCCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-
Q 048695 415 IPVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV- 487 (846)
Q Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G- 487 (846)
.|..+.+++++||++ .|+ ++++|+|||+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 14 ~~~~~~~l~~~nl~~-~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 14 FPEEEIALSTKDLHV-YYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred cCCCCeEEEEeeEEE-EEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 455566899999999 775 5789999999999999999999999999999999999973 799999998
Q ss_pred -------------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCcc
Q 048695 488 -------------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLH 550 (846)
Q Consensus 488 -------------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lS 550 (846)
+.+||++|++.+++.||+||+.++.... ...++++.+++++++++.++|. +..++.+++||
T Consensus 88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 88 DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred EcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 2489999998776569999999875432 1123445556788999999985 45788899999
Q ss_pred C-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 551 Y-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 551 g-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
+ .+|++|+|||||+|||+.++..+.++|+++ ++ +.|||+ ||+.+++.++||++++|+ +|+++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~ 242 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KK-NYTIIIVTHNMQQAARASDYTAFFY-LGDLIE 242 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCHHHHHHhcCEEEEEE-CCEEEE
Confidence 8 899999999999999999999999999998 54 789999 999999999999999999 999999
Q ss_pred ecCCC
Q 048695 617 FGPRG 621 (846)
Q Consensus 617 ~G~~~ 621 (846)
.|++.
T Consensus 243 ~g~~~ 247 (267)
T PRK14237 243 YDKTR 247 (267)
T ss_pred eCCHH
Confidence 99873
No 160
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=330.52 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=172.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+. |++|+|.++|
T Consensus 4 ~i~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDK-AFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEE-EeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 799999999 775 467999999999999999999999999999999999997 4999999998
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++.+++. ||+||+.++...+.. ...+.++.+++++++++.+||.+..++++++||+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 248999999888888 999999987543211 1123344556789999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ ++.|.|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~~~tvii~sHd~~~~~~~~d~i~~l~-~G~i~~~~~~~~ 227 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFR-DGQFIAEREVAD 227 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEEecCcCc
Confidence 899999999999999999999999999999 667999999 999999999999999999 999999998876
No 161
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=299.43 Aligned_cols=191 Identities=20% Similarity=0.202 Sum_probs=166.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 4 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRV-YYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEE-EeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 799999999 775 4679999999999999999999999999999999999974 399999988
Q ss_pred -------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 -------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.++|++|++.+++. ||+||+.++...+. ...+.++..++++++++.+||. +..++.+++||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 148999999989988 99999998764331 0113344556788999999984 457888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 233 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KK-EYTIVLVTHSPAQAARVSDYVAFLY-LGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hh-CCEEEEEECCHHHHHhhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999999 55 689999 999999999999999999 99999999873
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.8e-33 Score=292.58 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=162.3
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
++++||++ .|+ .+++|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 ~~~~~l~~-~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i 72 (213)
T TIGR01277 1 LALDKVRY-EYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV 72 (213)
T ss_pred CeEEeeeE-EeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccce
Confidence 46899999 664 24679999999999999999999999999999999985 999999999 358
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. |++||+.+....+. ..+.+.+++++++++.+||++..++.+.+||+ .+|++
T Consensus 73 ~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 73 SMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred EEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988888 99999987643221 11223355788999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
++|||||+|||+.++..+.+.|+++.++.|+|||+ ||+.+++.+.+|++++|+ +|+++..|+
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeEEEecC
Confidence 99999999999999999999999994445899999 999999999999999999 999998875
No 163
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-33 Score=295.84 Aligned_cols=189 Identities=22% Similarity=0.229 Sum_probs=168.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLL 490 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~i 490 (846)
|+++|+++ .|+ + ++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.+
T Consensus 1 l~~~~l~~-~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i 73 (235)
T cd03299 1 LKVENLSK-DWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI 73 (235)
T ss_pred CeeEeEEE-EeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCE
Confidence 46789998 775 2 38999999999999999999999999999999999975 999999999 369
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. |++||+.+..... ..+..+..+++.++++.+||.+..++.+.+||+ .+|++
T Consensus 74 ~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 74 SYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999988988 9999999875432 234455566788999999999999999999997 99999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
++|||||+|||+.+++.+.+.|++++++.|+|+|+ ||+.+++.+.||++++|+ +|+++..|+.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 215 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML-NGKLIQVGKPE 215 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999994445999999 999999999999999999 99999998863
No 164
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=299.09 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=165.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 3 ~~l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNL-WYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEE-EEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 4789999999 775 4679999999999999999999999999999999999863 689999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTV-NAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.+||++|++.+++.|++||+.+....+ +. ..++..++++++++.+||. +..++.+++||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH---GIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred cccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhc---CCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 2489999998777569999999875443 12 2345556788999999884 457888999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+.|||+++|+ +|+++..|++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~-~~tiiivsH~~~~~~~~~d~v~~l~-~G~i~~~~~~ 230 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KK-EYTIVIVTHNMQQASRVSDYTAFFL-MGDLIEFNKT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-Hh-CCeEEEEEcCHHHHHHhcCEEEEEE-CCeEEEeCCH
Confidence 899999999999999999999999999998 55 588888 999999999999999999 9999999987
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
+
T Consensus 231 ~ 231 (251)
T PRK14270 231 E 231 (251)
T ss_pred H
Confidence 4
No 165
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=298.20 Aligned_cols=191 Identities=20% Similarity=0.187 Sum_probs=165.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc----cccceEEEcC---------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI----PFTGSLNGNV--------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~----~~~G~I~~~G--------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+. |.+|+|.++|
T Consensus 2 ~~~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNL-FYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEE-EEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 588999999 786 467999999999999999999999999999999999986 3899999999
Q ss_pred ---eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC---------
Q 048695 488 ---LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--------- 551 (846)
+.++|++|++.+++.||+||+.++...+. .....++.+++++++++.++|. +..++.+.+||+
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 35899999987775699999998754431 0012234456788999999995 456788899998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.+.+|++++|+ +|+++..|+++
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 226 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SH-NLSMIMVTHNMQQGKRVADYTAFFH-LGELIEFGESK 226 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecCHHHHHhhCcEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999998 54 889999 999999999999999999 99999998863
No 166
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=330.33 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=172.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 4 ~~l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGK-SFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEE-EcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 4799999999 775 4679999999999999999999999999999999999984 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhc-CCC---CCHHHHHHHHHHHHHHcCCCcccccccCCccC---------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRV-GKT---VNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~-~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--------- 551 (846)
+.+|||+|++.+++. ||+||+.++..... ..+ .+.++..++++++++.+||.+..++++++|||
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 248999999888888 99999987542110 001 12344556889999999999999999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+.+++..+||++++|+ +|++++.|++++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tiiivsHd~~~~~~~~d~v~~l~-~G~i~~~g~~~~ 231 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGTAIVYISHKLAEIRRICDRYTVMK-DGSSVCSGMVSD 231 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEeeecchhh
Confidence 999999999999999999999999999999 667999999 999999999999999999 999999999876
No 167
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=307.12 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=197.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------- 487 (846)
..++++|+++ +|+ +..+++|||+++++||+.||+|.||||||||+++|.|.+ |++|+|+++|
T Consensus 3 ~~l~~~~itK-~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITK-RFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEE-EcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 4689999999 887 689999999999999999999999999999999999997 6999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
..||+|+|+..+.|. ||.||+..+..-......+.++.+++++++.++.||+=..|+++++||-
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 469999999999999 9999999987643333456788889999999999999889999999986
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC-CCC-ChHHHH
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP-RGS-NHDIIL 628 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~-~~~-~~~~l~ 628 (846)
.+|++|+|||||+-|-|+...++++.|+++ +++|+|||+ ||-++|+.+.|||+.+|. +||++-.-+ ..+ +.+++.
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l-~~~G~tIi~ITHKL~Ev~~iaDrvTVLR-~Gkvvgt~~~~~~~t~~ela 234 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRL-AAEGKTIIFITHKLKEVMAIADRVTVLR-RGKVVGTVDPVAETTEEELA 234 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccHHHHHHhhCeeEEEe-CCeEEeeecCCCCCCHHHHH
Confidence 999999999999999999999999999999 899999999 999999999999999999 999987666 333 456666
Q ss_pred HHHhhCCCCCC-CCCCCCcccceeeeccC
Q 048695 629 DYFLLIPKNPR-YSKRESPVRYITGAVGL 656 (846)
Q Consensus 629 ~~f~~~~~~~~-~~~~~npa~~~l~~~~~ 656 (846)
+..-...-..+ ......|.+.++++-+.
T Consensus 235 ~lMvG~~v~~~~~~~~~~pg~~vL~V~~L 263 (501)
T COG3845 235 ELMVGREVVLRVVKPPSTPGEVVLEVEDL 263 (501)
T ss_pred HHhcCCccccccccCCCCCCCeEEEEeee
Confidence 65543211111 12445677888887654
No 168
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=309.27 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=168.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-----ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-----FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-----~~G~I~~~G-------- 487 (846)
+|+++||++ .|.. .++.+.+|+|||+++++||+++|+|+||||||||+++|+|+.+ ++|+|.++|
T Consensus 3 ~L~v~~l~~-~y~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTI-EFKT-SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEE-EEeC-CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999 7742 1224679999999999999999999999999999999999973 789999999
Q ss_pred --------eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCC---CCHHHHHHHHHHHHHHcCCCc---ccccccCCcc
Q 048695 488 --------LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKT---VNAMRRHIHVELVLNQLGLLP---YSNQLVGSLH 550 (846)
Q Consensus 488 --------~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~---~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lS 550 (846)
+.++||+|++. +.|. ||.+++..........+ ...++.++++.++|+.+||.+ ..++.+.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 15999999975 5677 99999986432211001 112344568899999999975 4689999999
Q ss_pred C-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 551 Y-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 551 g-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
| .+|++|+|||||+|||+.++.+++++|+++.++.|.|||+ |||++++.+++||+++|+ +|++++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~-~G~ive 239 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY-CGQTVE 239 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEE
Confidence 8 9999999999999999999999999999994446999999 999999999999999999 999999
Q ss_pred ecCCCC
Q 048695 617 FGPRGS 622 (846)
Q Consensus 617 ~G~~~~ 622 (846)
.|++++
T Consensus 240 ~g~~~~ 245 (330)
T PRK15093 240 TAPSKE 245 (330)
T ss_pred ECCHHH
Confidence 998743
No 169
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=297.04 Aligned_cols=190 Identities=18% Similarity=0.158 Sum_probs=165.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
.++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 4 ~l~~~nl~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNV-HFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEE-EeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 589999999 775 4679999999999999999999999999999999999963 489999998
Q ss_pred -------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC----
Q 048695 488 -------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg---- 551 (846)
+.++|++|+..+++. |++||+.+....+ ...+.++.+++++++++.+++.+ ..++.+++||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 248999999988998 9999998765432 11233444567899999999863 46778899998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++|||+++|+ +|+++..|+++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 232 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KE-KYTIIIVTHNMQQAARVSDYTAFFY-MGDLVECGETK 232 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-Hh-CCcEEEEECCHHHHHhhCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999999 55 578888 999999999999999999 99999999864
No 170
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=298.48 Aligned_cols=191 Identities=18% Similarity=0.197 Sum_probs=165.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 11 ~~l~i~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNL-WYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEE-EEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 3799999999 776 4679999999999999999999999999999999999873 589999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.+....+. ..++++..++++++++.+++. +..++.+++||+
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 23899999987775699999998754331 113345556788999999985 356788999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|+|+ ||+.+++.+.|||+++|+ +|+++..|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 239 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KE-KYTIVIVTHNMQQAARVSDQTAFFY-MGELVECNDTN 239 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999999 55 789999 999999999999999999 99999999873
No 171
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=299.53 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=165.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+|+++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 18 ~~l~~~nl~~-~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~ 91 (267)
T PRK14235 18 IKMRARDVSV-FYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91 (267)
T ss_pred ceEEEEeEEE-EEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence 3799999999 776 4679999999999999999999999999999999999873 799999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.++...+. ...+.++..++++++++.+||.+ ..++.+++||+
T Consensus 92 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 92 RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred ccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 24899999987775699999998765431 11123444567899999999964 46788999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.++||++++|+ +|+++..|++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~i~~~g~~ 246 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQ-NYTIVIVTHSMQQAARVSQRTAFFH-LGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hc-CCeEEEEEcCHHHHHhhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999 55 689999 999999999999999999 9999999876
No 172
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.5e-33 Score=341.75 Aligned_cols=410 Identities=17% Similarity=0.109 Sum_probs=273.8
Q ss_pred cccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048695 158 DIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIP 237 (846)
Q Consensus 158 ~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~ 237 (846)
=.++++|+++..+.|+...++..+++..+++.. |+... ..+...++ +++++....+.+..+++.++++.
T Consensus 335 G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~~~~~---~~~~~~~~-------~~~l~~~s~i~l~y~~s~~f~~~ 403 (885)
T KOG0059|consen 335 GLSPSTYWLFALVWDLLLYLLILLILLIFVLIF-GFFAG---NNTVIILL-------LLLLYIRSAIPLTYILSFIFSKE 403 (885)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhee-ecccc---cchHHHHH-------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999888888776666543 23221 34544444 88888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhh----ccccCCCCCCCcceehhhhChHHHHHHHh-hhhhcC--CCCCCCCccc---ccccccc
Q 048695 238 EVGNGLAGLLVSIFLHLS----GFAIYPSNDPIYWKWLIYANPIYWANILY-CKCQFN--EGYTDPCTNF---LSVTNSQ 307 (846)
Q Consensus 238 ~~A~~~~~l~~~~~~l~~----Gf~I~~~~ip~w~~Wi~~inP~~ya~~al-~~nef~--~~~~~~C~~~---~g~~~~~ 307 (846)
..|..+..+...+..+.. ..+....+.|.++.|...+.|....++.. +..+.. ..+...+... .+.....
T Consensus 404 ~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (885)
T KOG0059|consen 404 STASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESF 483 (885)
T ss_pred cCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccc
Confidence 999888777666554422 12223455555666655566655554221 111110 0000000000 0000000
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHH----HHHhhhccccCCCCccccccccccccCCcccccccccccCCCCCCCCCCCCC
Q 048695 308 QIAKRPWLPYAILLGWTVLANFLA----LLGRRNIEFTGASQSLPHLRKTSIIHSSKDYSHSKFQSSCSSGSYNSEDLSG 383 (846)
Q Consensus 308 ~~~~~~w~~~~il~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (846)
+..--.|... +++....+.... .+..-.+....... ...... .. .....+.+.
T Consensus 484 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~-~~~~~~-~~--~~~~~~~~~----------------- 540 (885)
T KOG0059|consen 484 YTLLLEWLLP--LIGRRYLALVTEGVKDDLFFLLIFVPFKRR-MRALTQ-NM--LKGFEPVEV----------------- 540 (885)
T ss_pred cchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhccc-cccccc-cc--cCCCcCcch-----------------
Confidence 0001123221 111111111111 11100000000000 000000 00 000000000
Q ss_pred CCCCcccccCCCCCcccccchhhhhccC-CCCC---CCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEE
Q 048695 384 YSVPQKLYSGYNHMNEGIKEFYIDVEMN-GKGI---PVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALL 459 (846)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~ 459 (846)
|...+..++. ...+ ......+..+|+++ .|++. +.+++++|+.|++||+.+++
T Consensus 541 ------------------e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k-~y~~~----~~Av~~ls~~V~~gecfgLL 597 (885)
T KOG0059|consen 541 ------------------EKLDVARERNRVETLLFRSSYSSALVLNNLSK-VYGGK----DGAVRGLSFAVPPGECFGLL 597 (885)
T ss_pred ------------------hhHHHHHHHHhhhhhhhcccccceEEEcceee-eecch----hhhhcceEEEecCCceEEEe
Confidence 0000000000 0000 01123689999999 88632 11999999999999999999
Q ss_pred cCCCCChhhHHHHHcCCcc-ccceEEEcC-------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHH
Q 048695 460 GGSRTSKVTLLQCLAERIP-FTGSLNGNV-------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMR 524 (846)
Q Consensus 460 GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~ 524 (846)
|+|||||||++|+|.|..+ ++|++.++| +.+|||||+|.+.+. |.||+|.+.+++| ++++++
T Consensus 598 G~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~d 674 (885)
T KOG0059|consen 598 GVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSD 674 (885)
T ss_pred cCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhH
Confidence 9999999999999999985 999999988 359999999999999 9999999999998 777888
Q ss_pred HHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 525 RHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 525 ~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
.++.++.+++.+||.+++|++++.+|| .+|++++|||||+|+||.+++.++++++++ +++|+.||+
T Consensus 675 i~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~-~k~g~aiiL 753 (885)
T KOG0059|consen 675 IGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL-RKNGKAIIL 753 (885)
T ss_pred HHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEE
Confidence 888899999999999999999999998 899999999999999999999999999999 777889999
Q ss_pred -ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 592 -NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 592 -~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
||.++|+..+|||+.+|. +|++...|++ ++++..|..
T Consensus 754 TSHsMeE~EaLCtR~aImv-~G~l~ciGs~----q~LKsrfG~ 791 (885)
T KOG0059|consen 754 TSHSMEEAEALCTRTAIMV-IGQLRCIGSP----QELKSRYGS 791 (885)
T ss_pred EcCCHHHHHHHhhhhheee-cCeeEEecCh----HHHHhhcCC
Confidence 999999999999999999 9999999999 788877775
No 173
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-33 Score=295.40 Aligned_cols=190 Identities=21% Similarity=0.208 Sum_probs=163.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---c---ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---P---FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~---~~G~I~~~G------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. | .+|+|.++|
T Consensus 5 ~l~~~~l~~-~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSV-YYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEE-EEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 799999999 775 467999999999999999999999999999999999984 4 489999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.||+||+.+....+ + ....++.+++++++++.+++. +..++.+++||+
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 2489999998776559999999875433 1 112333456788899999974 456888999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.++|+++ ++ ++|||+ ||+.+++.+.|||+++|+ +|++++.|+++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 232 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KD-DYTMLLVTRSMQQASRISDRTGFFL-DGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hh-CCeEEEEECCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999998 54 689999 999999999999999999 99999999864
No 174
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-33 Score=296.64 Aligned_cols=191 Identities=19% Similarity=0.176 Sum_probs=166.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 4 ~l~i~~v~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNI-YYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEE-EEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 689999999 775 4679999999999999999999999999999999999973 599999988
Q ss_pred -------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 -------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.+||++|+..+++. ||+||+.+....+. ..++++.+++++++++.+||. +..++.+++||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 248999999988998 99999998765431 123445556789999999984 467888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc-----cCCEEEE
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT-----KEGHQAY 616 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~-----~~G~~v~ 616 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++|||+++|+ .+|++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 899999999999999999999999999999 54 689999 999999999999999995 2699999
Q ss_pred ecCCC
Q 048695 617 FGPRG 621 (846)
Q Consensus 617 ~G~~~ 621 (846)
.|+++
T Consensus 234 ~~~~~ 238 (258)
T PRK14241 234 IDDTE 238 (258)
T ss_pred cCCHH
Confidence 99863
No 175
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.5e-33 Score=296.29 Aligned_cols=192 Identities=17% Similarity=0.161 Sum_probs=165.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ .+|+|.++|+
T Consensus 6 ~l~~~~l~~-~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~ 79 (258)
T PRK11701 6 LLSVRGLTK-LYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALS 79 (258)
T ss_pred eEEEeeeEE-EcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCC
Confidence 799999999 775 4679999999999999999999999999999999999975 9999999883
Q ss_pred ----------EEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC---
Q 048695 489 ----------LLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY--- 551 (846)
Q Consensus 489 ----------~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg--- 551 (846)
.+||++|+.. +.+. |+.||+.+...... .....+.+++++++++.+++.+ ..++.+++||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 3899999973 5666 99999976533211 1122344567889999999974 78899999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.+.+|++++|+ +|++++.|++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g~i~~~~~~ 236 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999999984445899999 999999999999999999 9999999987
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
+
T Consensus 237 ~ 237 (258)
T PRK11701 237 D 237 (258)
T ss_pred H
Confidence 3
No 176
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-33 Score=327.10 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=170.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 10 ~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISK-QYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEE-EeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 3799999999 786 4679999999999999999999999999999999999984 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+||++|++.+++. ||+||+.+.... .++.+++++++++.+||.+..++++++|||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 148999999988898 999999885321 123456789999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|++++.|++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiiivtHd~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 226 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMR-DGTIALSGKTAD 226 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEecChHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 999999998865
No 177
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-33 Score=295.14 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=164.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC---cc---ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER---IP---FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~---~~---~~G~I~~~G------ 487 (846)
++++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+ .| .+|+|.++|
T Consensus 2 ~~l~~~~~~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNF-WYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEE-EEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 4799999999 776 46799999999999999999999999999999999996 33 489999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg---- 551 (846)
+.++|++|++.+++.|++||+.++...+. ....++..++++++++.+||.+ ..++.+++||+
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 14899999987765599999998765431 1122334567889999999854 56788999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.+.|||+++|+ +|++++.|+++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~~~~~~~~~ 230 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIVTHNMQQAARVSDKTAFFY-MGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999998 54 789999 999999999999999999 99999999873
No 178
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=311.03 Aligned_cols=183 Identities=19% Similarity=0.250 Sum_probs=162.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
||++ ||++ .|+ ++. + |+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++|
T Consensus 1 ~l~~-~l~k-~~~-----~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQ-QLG-----DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEE-EeC-----CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 3677 8998 775 333 3 8999999999999999999999999999999975 999999988
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+|||+|+..+++. ||+||+.++.. ....++++++++.+||++..++.+++|||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 248999999999999 99999998642 12235689999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+++.|++++++.|+|+|+ ||+.+++.+++|++++|+ +|+++..|++++
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 8999999999999999999999999999995555899999 999999999999999999 999999998754
No 179
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-33 Score=297.90 Aligned_cols=191 Identities=16% Similarity=0.123 Sum_probs=164.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 20 ~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 20 HILEVKDLSI-YYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred ceEEEEEEEE-EeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 3799999999 776 467999999999999999999999999999999999974 3789999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.|++||+.+...... .......++.+++.++.+++. +..++.+++||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 24899999987776699999998654321 112233345678889999984 456888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.++|||+++|+ +|++++.|+++
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~~~~~~d~v~~l~-~G~i~~~~~~~ 248 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KE-EYSIIIVTHNMQQALRVSDRTAFFL-NGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEEeCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999999 55 689999 999999999999999999 99999999863
No 180
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.6e-33 Score=310.61 Aligned_cols=182 Identities=23% Similarity=0.269 Sum_probs=161.6
Q ss_pred ceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------------e
Q 048695 426 GLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------------L 488 (846)
Q Consensus 426 ~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------------~ 488 (846)
||++ .|+ ++. + |+|+++++||+++|+|||||||||||++|+|+.+ ++|+|.++| +
T Consensus 4 ~l~~-~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSK-RLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEE-EEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 7888 675 344 4 9999999999999999999999999999999985 999999988 1
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+||++|++.+++. ||+||+.++.... ..++.+++++++++.+||++..++++++||| .+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 38999999999999 9999999875422 2234456789999999999999999999998 899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
++|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++..++|++++|+ +|+++..|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe-CCEEEEECCHH
Confidence 9999999999999999999999999994445899999 999999999999999999 99999999873
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.4e-33 Score=292.91 Aligned_cols=189 Identities=15% Similarity=0.129 Sum_probs=160.9
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+.+++++||++ .|+ ++++++|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 5 ~~~i~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGY-LAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEE-eeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 34799999999 775 4679999999999999999999999999999999999975 999999998
Q ss_pred --eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++.||+||+.+....+ ... ...++++++++.+||. ...++.+++||+
T Consensus 79 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIR---NQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEecccccccccHHHHHHhHHhhc---CCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2589999998777559999999865443 111 1235678999999996 578999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++. .||++++|++++..+..|.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999994456899999 99999985 6999999965665555553
No 182
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=298.60 Aligned_cols=189 Identities=21% Similarity=0.207 Sum_probs=163.1
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G------ 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |++|+|.++|
T Consensus 12 ~~l~i~nl~~-~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTI-SYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEE-EEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 4799999999 775 467999999999999999999999999999999999986 3789999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC----CcccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGL----LPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L----~~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.+.+..+ +.. ++..++++++++.+++ ++..++.+.+||+
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred cCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHH
Confidence 1489999998777569999999876543 222 2334567888999887 3567888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC----------
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE---------- 611 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~---------- 611 (846)
.+|++|+|||||+|||+.++..+.++|+++ ++ ++|||+ ||+.+++.++||++++|+ +
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~i~~l~-~~~~~~~~~g~ 238 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KK-NFTIVIVTHNMQQAVRVSDMTAFFN-AEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhcCEEEEEe-ccccccccccc
Confidence 899999999999999999999999999998 54 689999 999999999999999999 5
Q ss_pred -CEEEEecCCC
Q 048695 612 -GHQAYFGPRG 621 (846)
Q Consensus 612 -G~~v~~G~~~ 621 (846)
|++++.|+++
T Consensus 239 ~g~~~~~~~~~ 249 (269)
T PRK14259 239 VGYLVEFNETK 249 (269)
T ss_pred cceEEEeCCHH
Confidence 6789999873
No 183
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-34 Score=273.44 Aligned_cols=192 Identities=19% Similarity=0.223 Sum_probs=177.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.|+++||.+ +|+ ...+|++||+..+.|+++.|+|.|||||||+|+||.-+. |..|.|.+||
T Consensus 6 ~l~v~dlHK-~~G-----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 6 ALEVEDLHK-RYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred ceehhHHHh-hcc-----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 589999999 887 789999999999999999999999999999999999986 6999999999
Q ss_pred -------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--
Q 048695 488 -------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-- 551 (846)
Q Consensus 488 -------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-- 551 (846)
.+.|+|+|+.+++++ ||.||+.-+..--+ ++++.+..++.+..|+++|+.+.+|.++..|||
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence 258999999999999 99999976432111 567889999999999999999999999999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|+++++|||||+|||+...++++.+++| +++|+|.++ ||.+..+.+...++++|+ +|++-..|+
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L-AeEgrTMv~VTHEM~FAR~Vss~v~fLh-~G~iEE~G~ 235 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL-AEEGRTMVVVTHEMGFARDVSSHVIFLH-QGKIEEEGP 235 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH-HHhCCeEEEEeeehhHHHhhhhheEEee-cceecccCC
Confidence 899999999999999999999999999999 889999999 999999999999999999 999999999
Q ss_pred CCC
Q 048695 620 RGS 622 (846)
Q Consensus 620 ~~~ 622 (846)
|++
T Consensus 236 P~q 238 (256)
T COG4598 236 PEQ 238 (256)
T ss_pred hHH
Confidence 954
No 184
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.2e-33 Score=332.62 Aligned_cols=230 Identities=18% Similarity=0.219 Sum_probs=192.4
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccccchhhHHHHHH---------------------------------HHHHHHHHH
Q 048695 92 RPFVQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCLQ---------------------------------QESSNHVNL 138 (846)
Q Consensus 92 s~y~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~~~~~~---------------------------------~~~~~~l~~ 138 (846)
..+..|||+|+++|++|+++. +||+.+...+++..++ ..++..++.
T Consensus 382 ~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~ 460 (659)
T PLN03211 382 RISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFV 460 (659)
T ss_pred CccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999988 6766444222111100 112336777
Q ss_pred HhhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHH
Q 048695 139 TLHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFL 218 (846)
Q Consensus 139 ~~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l 218 (846)
+..+|+||+||| ..++|++++|++|++++++|+.++.+++|++|+|||+||++++ ++||+|++ ++++
T Consensus 461 f~~er~v~~rE~----~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~--~~F~~f~l-------i~~l 527 (659)
T PLN03211 461 FPQERAIFVKER----ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPEL--GAFLLTLL-------VLLG 527 (659)
T ss_pred HHHhhHHHHHhh----hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCH--HHHHHHHH-------HHHH
Confidence 889999999999 9999999999999999999999999999999999999999876 79999999 9999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCC----
Q 048695 219 VAYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYT---- 294 (846)
Q Consensus 219 ~~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~---- 294 (846)
..+++.++++++++++||...|+.+++++++.+++|+||+|+ +||+||+|++|+||+.|++++++.|||.+...
T Consensus 528 ~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~ 605 (659)
T PLN03211 528 YVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSL 605 (659)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999999999999999999999997 79999999999999999999999999964211
Q ss_pred CCCcc----------cccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048695 295 DPCTN----------FLSVTNSQQIAKRPWLPYAILLGWTVLANFLALLGRRNIE 339 (846)
Q Consensus 295 ~~C~~----------~~g~~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~~~~~~ 339 (846)
..|.. +.+.. .......|.++++|++++++|.+++++++++.+
T Consensus 606 ~~C~~~~~~~~~~c~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 606 LGCSLPHGSDRASCKFVEED--VAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred cCCCCcccCCCCCCccchhh--hhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 14642 11111 223456899999999999999999999997543
No 185
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-32 Score=293.28 Aligned_cols=190 Identities=13% Similarity=0.135 Sum_probs=164.7
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-c----ccceEEEcC------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-P----FTGSLNGNV------ 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~----~~G~I~~~G------ 487 (846)
|.+++++||++ .|+ +.+|+|+|+++++||+++|+||||||||||+++|+|+. | ++|+|.++|
T Consensus 2 ~~~l~~~~l~~-~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~ 74 (254)
T PRK10418 2 PQQIELRNIAL-QAA------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74 (254)
T ss_pred CcEEEEeCeEE-Eec------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc
Confidence 45799999999 662 47999999999999999999999999999999999997 5 789999998
Q ss_pred ----eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCccC------
Q 048695 488 ----LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY------ 551 (846)
Q Consensus 488 ----~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg------ 551 (846)
+.++||+|++. +.+. |+.+++.+.+... +... ..++++++++.++|.+ ..++.+++||+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 35999999974 4566 9999987754332 1222 2357899999999987 57899999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.+|++++|+ +|+++..|+++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~-~G~i~~~~~~~ 226 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS-HGRIVEQGDVE 226 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE-CCEEEEecCHH
Confidence 9999999999999999999999999999994445899999 999999999999999999 99999999874
No 186
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-33 Score=288.10 Aligned_cols=181 Identities=22% Similarity=0.267 Sum_probs=158.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL------------ 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~------------ 488 (846)
+++ ||++ .|+ ++.+ |||+++++ |+++|+||||||||||+++|+|+.+ .+|+|.++|.
T Consensus 2 ~~~-~l~~-~~~-----~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 71 (214)
T cd03297 2 LCV-DIEK-RLP-----DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71 (214)
T ss_pred cee-eeeE-ecC-----Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhh
Confidence 344 8898 776 3444 99999999 9999999999999999999999975 9999999881
Q ss_pred ----EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 489 ----LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 489 ----~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
.++|++|++.+++. |++||+.+....+ ..+..+++++++++.+||.+..++.+++||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 48999999988888 9999998865321 2334456789999999999989999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.+++.+.+.|++++++.|+|||+ ||+.+++.+.+|++++|+ +|+++..|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999994444899999 999999999999999999 99998765
No 187
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.3e-33 Score=291.91 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=162.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQ 500 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~ 500 (846)
+.++|+++ .|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+.+....+...+.
T Consensus 23 l~~~~~~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 96 (224)
T cd03220 23 LGILGRKG-EVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFN 96 (224)
T ss_pred hhhhhhhh-hcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCC
Confidence 77888988 776 5789999999999999999999999999999999999975 9999999996654443344566
Q ss_pred CC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCC
Q 048695 501 TY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGV 566 (846)
Q Consensus 501 ~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgL 566 (846)
+. ||+||+.+....+ +.+.++.+++++++++.+||++..++.+++||+ .+|++|+|||||+||
T Consensus 97 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 97 PELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 77 9999999876543 233445556788999999999999999999998 899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 567 DTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 567 D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+.++..+.+.|+++ +++|+|||+ ||+.+++.+++|++++|+ +|+++..|
T Consensus 174 D~~~~~~~~~~l~~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEecC
Confidence 999999999999999 556899999 999999999999999999 99998765
No 188
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.2e-33 Score=292.45 Aligned_cols=176 Identities=20% Similarity=0.196 Sum_probs=155.9
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-------EEEEEeccCcCCCC-CHHHHHHHHHh
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL-------LLCYVEKLDAHQTY-SVSESIQFSAA 513 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~-------~igyv~Q~~~~~~~-TV~E~l~f~a~ 513 (846)
|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+ ..+|++|++.+++. ||+||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999985 9999999992 25899999999998 99999998643
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048695 514 LRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSL 580 (846)
Q Consensus 514 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~ 580 (846)
...+ ..++++.+++++++++.+||++..++.+++||+ .+|++|+|||||+|||+.++..+.+.|++
T Consensus 81 ~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 81 RVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred hccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 1111 234455566789999999999999999999998 99999999999999999999999999999
Q ss_pred HHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 581 CQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 581 l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++++.|+|||+ ||+.+++.+.||++++|+ +|+++..|++
T Consensus 160 ~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDVDEALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhcCEEEEEe-CCcEecccCc
Confidence 94445899999 999999999999999999 9999988865
No 189
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=293.06 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=163.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
.++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDL-FYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEE-EEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 589999999 775 4679999999999999999999999999999999999853 589999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.|++||+.+....+. ..+.++.+++++++++.+++. +..++.+++||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 24899999987665699999998754331 112344566788999999874 456888999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.+.+|++++|+ +|+++..|++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~~~~d~v~~l~-~G~i~~~~~~ 229 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KK-DYTIVIVTHNMQQASRISDKTAFFL-NGEIVEFGDT 229 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEEeCHHHHHhhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999998 54 789999 999999999999999999 9999999876
No 190
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=292.24 Aligned_cols=189 Identities=19% Similarity=0.198 Sum_probs=164.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSA-YYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEE-EeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 689999999 775 4679999999999999999999999999999999999863 789999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.||+||+.+....+. ..++++.++.++++++.+|+.+ ..++.+++||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 24999999987765699999998754331 1123344566889999999853 47888999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+++|++++|+ +|+++..|++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tili~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SE-NYTIVIVTHNIGQAIRIADYIAFMY-RGELIEYGPT 229 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hc-CcEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEecCH
Confidence 899999999999999999999999999998 54 689999 999999999999999999 9999999986
No 191
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.1e-33 Score=286.76 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=153.7
Q ss_pred EeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe--------------
Q 048695 424 FEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL-------------- 488 (846)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~-------------- 488 (846)
++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+
T Consensus 1 i~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISK-KFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEE-EEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 368888 675 4679999999999999999999999999999999999985 9999999981
Q ss_pred --EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 489 --LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 489 --~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
.++|++|++.+++. |++||+.+....+ +..+++..++++++++.+||++..++.+.++|+ .
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 48999999988888 9999999875433 234455567889999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL 608 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL 608 (846)
+|++|+|||||+|||+.++..+.+.|+++ ++.|.|+|+ ||+.+.+ +.||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999999999 566899999 9999865 689999875
No 192
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.9e-32 Score=294.72 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=169.3
Q ss_pred EEEEeceeeeeeccC----CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEG----SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~----~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------- 487 (846)
+|+++||++ .|+.+ ++.++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~nl~~-~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSH-HYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEE-EecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 689999999 77520 0113679999999999999999999999999999999999975 999999998
Q ss_pred -------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg----- 551 (846)
+.+||++|+. .+.+. |+.|++.+..... .....++..++++++++.+|+. +..++.+++||+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHH
Confidence 2599999997 35677 9999998754321 1233445556899999999997 588999999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|+|+ ||+.+++.++||++++|+ +|++++.|++.+
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 9999999999999999999999999999994445899999 999999999999999999 999999998765
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=292.16 Aligned_cols=189 Identities=18% Similarity=0.196 Sum_probs=163.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~-~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHL-SYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEE-EEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 689999999 775 4679999999999999999999999999999999999973 699999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.||+||+.+....+. ...++...++++++++.+++. +..++.+++||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 24899999987775599999988654321 112333446788999999994 456888999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+.+|++++|+ +|+++..|++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 230 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KH-QYTFIMVTHNLQQAGRISDQTAFLM-NGDLIEAGPT 230 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-Hc-CCeEEEEECCHHHHHhhcCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999998 54 689999 999999999999999999 9999999876
No 194
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=291.94 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=164.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-----cceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-----TGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-----~G~I~~~G------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++|++++|+||||||||||+++|+|+.+ . +|+|.++|
T Consensus 4 ~l~~~~l~~-~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNF-FYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEE-EEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 689999999 775 4679999999999999999999999999999999999975 4 69999988
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVN-AMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~-~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.++|++|++.+++.|++||+.+....+ +.. +++..+.++++++.++|. +..++.+++||+
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRML---GTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhc---CCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 2499999998877669999999876543 112 233445678888988874 457888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.++|+++ + +|.|||+ ||+.+++.+.||++++|+ +|++++.|+++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~~tilivsh~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 231 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-K-QNYTIAIVTHNMQQAARASDWTGFLL-TGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-cCCEEEEEeCCHHHHHhhCCEEEEEe-CCeEEEeCCHH
Confidence 899999999999999999999999999998 5 4789999 999999999999999999 99999999874
No 195
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=295.82 Aligned_cols=193 Identities=19% Similarity=0.194 Sum_probs=166.2
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC----
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV---- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G---- 487 (846)
...+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 22 ~~~~l~~~nl~~-~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNL-FYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEE-EEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 344799999999 775 4679999999999999999999999999999999999964 699999998
Q ss_pred ----------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC--
Q 048695 488 ----------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY-- 551 (846)
Q Consensus 488 ----------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg-- 551 (846)
+.++|++|++.+++.||+||+.+....+ ....+++.+++++++++.+++. +..++.+++||+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 2589999998777669999998875433 1112334456788999999985 356788999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+.||++++|+ +|+++..|+
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i~~~g~ 250 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KS-KYTIVIVTHNMQQAARVSDYTAFMY-MGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-Hh-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEEEecCC
Confidence 999999999999999999999999999999 55 689888 999999999999999999 999999987
Q ss_pred CC
Q 048695 620 RG 621 (846)
Q Consensus 620 ~~ 621 (846)
++
T Consensus 251 ~~ 252 (272)
T PRK14236 251 TD 252 (272)
T ss_pred HH
Confidence 63
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.4e-32 Score=287.36 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=162.5
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++|+++ .|+++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|.++ .+|+|.++|
T Consensus 2 l~~~~l~~-~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNH-YYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEE-EccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 68899999 67521 113679999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++. |+.||+.+...... ..+.++..++++++++.+||.+..++.+.++|+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 248999999988888 99999998764331 134455567899999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|+++.++.|+|||+ +|+.+ +.++||++++|+ +|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIVHME-DGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEEEEE-CCEE
Confidence 8999999999999999999999999999994446899999 99997 458999999999 8876
No 197
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=292.17 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=164.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++|
T Consensus 5 ~~i~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNL-WYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEE-EEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3799999999 775 5689999999999999999999999999999999999853 389999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.++|++|++.+++.||+||+.+....+. ..+..+.+++++++++.+++. +..++.+++||+
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred ccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 24899999988776699999998765431 112334456788899999884 346788999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++++|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+.+|++++|+ +|+++..|+++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~-~~tvii~sh~~~~~~~~~d~v~~l~-~G~i~~~g~~~ 233 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KK-EYTVIIVTHNMQQAARVSDYTGFMY-LGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hh-CceEEEEEcCHHHHHhhCCEEEEEE-CCEEEEcCCHH
Confidence 899999999999999999999999999999 55 589988 999999999999999999 99999998863
No 198
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.7e-33 Score=294.92 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=161.3
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEE
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLL 490 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~i 490 (846)
+++||++ . .+|+|||+++++||+++|+||||||||||+++|+|+.+.+|+|.++| +.+
T Consensus 2 ~~~~l~~-~---------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAV-S---------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccch-h---------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe
Confidence 4667776 1 27999999999999999999999999999999999988899999999 248
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C----
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H---- 552 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~---- 552 (846)
||++|++.+++. ||+||+.+.... ..+.++..++++++++.+||.+..++.+++||+ .
T Consensus 72 ~~v~q~~~~~~~~tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 72 AYLSQQQTPPFAMPVFQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred EEecccCccCCCccHHHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 999999877777 999999886321 123344456789999999999989999999998 4
Q ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 ---CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ---~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|+|||||+|||+.++..+.++|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..|+.++
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~-~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G~i~~~g~~~~ 219 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSEL-CQQGIAVVMSSHDLNHTLRHADRVWLLK-QGKLLASGRRDE 219 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 67999999999999999999999999999 667999999 999999999999999999 999999998743
No 199
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=291.06 Aligned_cols=191 Identities=17% Similarity=0.128 Sum_probs=164.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-----cceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-----TGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-----~G~I~~~G------ 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ . +|+|.++|
T Consensus 3 ~~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 3 LLLSAQDVNI-YYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEEeeeEE-EEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 4799999999 775 4679999999999999999999999999999999999974 2 79999998
Q ss_pred --------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 --------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.+||++|++.+++. |++||+.+..... ....+++..+.++++++.+++. +..++.+++||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 158999999989998 9999998765432 1112334456677888888763 456888999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+.|||+++|+ +|++++.|++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KK-VTTIIIVTHNMHQAARVSDTTSFFL-VGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999998 54 689999 999999999999999999 9999999886
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
+
T Consensus 232 ~ 232 (252)
T PRK14272 232 D 232 (252)
T ss_pred H
Confidence 3
No 200
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=291.74 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=173.9
Q ss_pred eEEEEeceeeeeeccC---------------CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceE
Q 048695 420 VTFVFEGLTFSRYEEG---------------SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSL 483 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~---------------~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I 483 (846)
+.++++||++ .|... ...++.+|+++|+++++||+++|+||||||||||+++|+|+.+ .+|+|
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 3 VSVNIKNVTK-EYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred ceEEEeeeEE-EEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 4678888887 55321 1235679999999999999999999999999999999999975 99999
Q ss_pred EEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 484 NGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 484 ~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
.++|+ ++++.|+..+.+. |++||+.+..... +.+.++..+.++++++.++|.+..++.+++||+
T Consensus 82 ~~~g~-~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Lara 157 (264)
T PRK13546 82 DRNGE-VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSIN 157 (264)
T ss_pred EECCE-EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 99985 5778888777777 9999998765443 234455556788899999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHH
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIIL 628 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~ 628 (846)
.+|++|+|||||+|||+.++..+++.|+++ ++.|.|||+ ||+.+++.+.+|++++|+ +|+++..|+.++..+...
T Consensus 158 l~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~-~~~g~tiIiisH~~~~i~~~~d~i~~l~-~G~i~~~g~~~~~~~~~~ 235 (264)
T PRK13546 158 ITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIE-GGKLKDYGELDDVLPKYE 235 (264)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHcCEEEEEE-CCEEEEeCCHHHHHHHhH
Confidence 899999999999999999999999999999 677999999 999999999999999999 999999998754333344
Q ss_pred HHHhh
Q 048695 629 DYFLL 633 (846)
Q Consensus 629 ~~f~~ 633 (846)
++|..
T Consensus 236 ~~~~~ 240 (264)
T PRK13546 236 AFLND 240 (264)
T ss_pred HHHHH
Confidence 44444
No 201
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-32 Score=282.82 Aligned_cols=169 Identities=25% Similarity=0.388 Sum_probs=146.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC---------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV--------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G--------- 487 (846)
++.|+||++ .|+++ ++++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~~~~~~~~~-~~~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISF-TTGKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEE-EeccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 689999999 78643 246789999999999999999999999999999999999963 799999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++. ||+||+.+.+..+ .++.+.+||+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 358999999989998 9999998764321 4566677776
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.+++.+++.|++++++.+.|+|+ ||+.+++.+.+|++++|+ +|+++..|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEecC
Confidence 8999999999999999999999999999994444666555 788889999999999999 99998764
No 202
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=321.01 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=169.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~-~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGK-TFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEE-EEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 799999999 775 4679999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+|||+|++.+++. ||+||+.++...+.....+.++.+++++++++.+||.+..++.+++||| .
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 248999999988888 9999999864211111123445566889999999999888999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|++|||||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiiiitHd~~~~~~~~d~i~~l~-~G~i~~~~~~ 224 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIREL-RAEGRVILYVSHRMEEIFALCDAITVFK-DGRYVATFDD 224 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEeecCc
Confidence 99999999999999999999999999999 677999999 999999999999999999 9999887764
No 203
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=291.08 Aligned_cols=189 Identities=19% Similarity=0.230 Sum_probs=162.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC--------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV-------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G-------- 487 (846)
-+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 6 ~~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNL-WYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEE-EEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 46789999 775 4689999999999999999999999999999999999962 599999998
Q ss_pred ------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC------
Q 048695 488 ------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY------ 551 (846)
Q Consensus 488 ------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg------ 551 (846)
+.+||++|++.+++.||+||+.+....+ ......++.+++++++++.+||.+ ..++.+++||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccCCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2489999998777669999999875433 111123344567889999999975 45778899998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.+.||++++|+ +|+++..|++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 232 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVVTHSMKQAKKVSDRVAFFQ-SGRIVEYNTT 232 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhcCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999998 54 899999 999999999999999999 9999999876
No 204
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=291.45 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=165.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-----cceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-----TGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-----~G~I~~~G------- 487 (846)
+|+++|+++ .|+ ++.+|+|+|+++++||+++|+|+|||||||||++|+|+.+ . +|+|.++|
T Consensus 7 ~l~~~nl~~-~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSF-YYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEE-EeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 699999999 775 4579999999999999999999999999999999999986 3 79999988
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCccC----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTV-NAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg---- 551 (846)
+.++|++|+..+++.|++||+.+..... +. +..+..+++.++++.+++.+ ..++.+++||+
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIV---GWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred cchHHhhccEEEEecCCccCcccHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 2489999998766569999998875432 11 33344567889999999853 56888899998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC-----CEEEE
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE-----GHQAY 616 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~-----G~~v~ 616 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.++||++++|+ + |+++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK-GNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc-cCCCcCceEEE
Confidence 8999999999999999999999999999984446899999 999999999999999999 8 99999
Q ss_pred ecCCC
Q 048695 617 FGPRG 621 (846)
Q Consensus 617 ~G~~~ 621 (846)
.|+++
T Consensus 237 ~~~~~ 241 (261)
T PRK14258 237 FGLTK 241 (261)
T ss_pred eCCHH
Confidence 99873
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-32 Score=295.03 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=163.4
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G----- 487 (846)
..+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 37 ~~~l~i~~l~~-~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNV-FYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEE-EEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 34799999999 775 467999999999999999999999999999999999996 3799999998
Q ss_pred ---------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 ---------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.++|++|++.+++.||+||+.+....+ +.+. +..++++++++.+||. +..++.+++||+
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred cccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 2489999998766569999999876543 2222 3456789999999985 457888999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEE-EEccCCEEEEecC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLAL-ILTKEGHQAYFGP 619 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vl-lL~~~G~~v~~G~ 619 (846)
.+|+||||||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+++||++ +|+ +|+++..|+
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~-~~-~~tiii~tH~~~~i~~~~dri~v~l~-~G~i~~~g~ 263 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL-AE-EYTVVIVTHNMQQAARISDKTAVFLT-GGELVEFDD 263 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHhhcCEEEEEee-CCEEEEeCC
Confidence 899999999999999999999999999999 55 378888 999999999999975 678 999999987
Q ss_pred C
Q 048695 620 R 620 (846)
Q Consensus 620 ~ 620 (846)
+
T Consensus 264 ~ 264 (285)
T PRK14254 264 T 264 (285)
T ss_pred H
Confidence 6
No 206
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-32 Score=292.53 Aligned_cols=185 Identities=19% Similarity=0.246 Sum_probs=161.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.++|++|++
T Consensus 3 ~~l~~~~l~~-~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~ 76 (251)
T PRK09544 3 SLVSLENVSV-SFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKL 76 (251)
T ss_pred cEEEEeceEE-EEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccc
Confidence 3799999999 775 4679999999999999999999999999999999999975 999999998 6799999998
Q ss_pred cCCCC---CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeC
Q 048695 498 AHQTY---SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEE 561 (846)
Q Consensus 498 ~~~~~---TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDE 561 (846)
.+++. |+++++.+.. +.. .+++.++++.+||.+..++++.+||+ .+|++|+|||
T Consensus 77 ~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 77 YLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred ccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 76653 6777765321 111 24578899999999999999999998 8999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 562 PLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 562 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
||+|||+.++..+.+.|++++++.|+|||+ ||+.+++.+.||++++|+ + +++..|++++
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~-~i~~~g~~~~ 206 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-H-HICCSGTPEV 206 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-C-ceEeeCCHHH
Confidence 999999999999999999994444899999 999999999999999998 6 6888888753
No 207
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=295.86 Aligned_cols=190 Identities=19% Similarity=0.187 Sum_probs=164.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---c---ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---P---FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~---~~G~I~~~G------ 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. | .+|+|.++|
T Consensus 38 ~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 38 PHVVAKNFSI-YYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred eEEEEeeeEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 4799999999 775 457999999999999999999999999999999999974 3 899999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTV-NAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.+||++|++.+++.||+||+.+....+ +. +..+.++++.++++.+|+. +..++.+++||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLH---GINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhc---CCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 2589999998777559999999875433 12 2333456788899999873 567888999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ +|+.+++.++|||+++|+ +|+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~-~~tvIivsH~~~~~~~~~d~i~~L~-~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RG-SYTIMIVTHNMQQASRVSDYTMFFY-EGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999998 54 589999 999999999999999999 9999999986
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
+
T Consensus 266 ~ 266 (286)
T PRK14275 266 A 266 (286)
T ss_pred H
Confidence 3
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=290.54 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=162.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 4 ~~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHL-FYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEE-EEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 3799999999 776 4679999999999999999999999999999999999853 489999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.+....+. ...++...+++.+.++.+++. +..++.+++||+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 24899999987776699999998754431 112233345677888888874 456788999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.+.+|++++|+ +|+++..|++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~vsH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RD-QYTIILVTHSMHQASRISDKTAFFL-TGNLIEFADT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-Hh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999 55 478988 999999999999999999 9999999876
No 209
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=290.20 Aligned_cols=189 Identities=19% Similarity=0.195 Sum_probs=163.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDL-FYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEE-EEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 689999999 776 4679999999999999999999999999999999999975 489999998
Q ss_pred ------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC------
Q 048695 488 ------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY------ 551 (846)
Q Consensus 488 ------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg------ 551 (846)
+.+||++|++.+++.||+||+.+..... ...++++..++++++++.+++. +..++.+++||+
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred chHHHHhheeEEecCCCcCcccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 2489999998777569999999875432 1112334456788899999875 456788899998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.+.|||+++|+ +|+++..|++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~~~d~i~~l~-~G~i~~~g~~ 228 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KK-NYTIVIVTHSMQQARRISDRTAFFL-MGELVEHDDT 228 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEecCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 55 589999 999999999999999999 9999999876
No 210
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-32 Score=292.46 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=165.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+|+++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 20 ~~l~i~nl~~-~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTL-GFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEE-EEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 4799999999 786 5789999999999999999999999999999999999974 599999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.||+||+.+..... ...+.++..++++++++.+||.+ ..++.+++||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred chhHHHhhheEEeccCCccCCccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 2489999998776669999999865432 11234455567788999999974 45778899998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.+++.+.+.|+++ ++ ++|||+ +|+.+++.+++||+++|+ +|+++..|+++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiiivsH~~~~~~~~~dri~~l~-~G~i~~~g~~~ 247 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-AD-RLTVIIVTHNLAQAARISDRAALFF-DGRLVEEGPTE 247 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999999 55 489999 999999999999999999 99999999874
No 211
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=308.09 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=177.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-----ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-----FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-----~~G~I~~~G-------- 487 (846)
+|+++||++ .|... .+...+++||||++++||++||+|.|||||||+.++|.|++| .+|+|.++|
T Consensus 5 lL~V~nL~v-~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTV-EFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEE-EEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 799999999 67532 333579999999999999999999999999999999999986 489999999
Q ss_pred --------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCccC---
Q 048695 488 --------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQ--LVGSLHY--- 551 (846)
Q Consensus 488 --------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~v~~lSg--- 551 (846)
+.|+|++|++ .+.|. ||.+.+.-...++. ..++++.++++.++|+++||.+-..+ ++++|||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 6899999996 46677 99999988777764 23478888999999999999876654 9999999
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|++||||++||+..+.+|+++|++++++.|.++|+ |||+..+.++|||+++|. +|+++..|++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~-~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY-KGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE-CCEEEEecCH
Confidence 9999999999999999999999999999998889999999 999999999999999999 9999999998
Q ss_pred CC
Q 048695 621 GS 622 (846)
Q Consensus 621 ~~ 622 (846)
++
T Consensus 240 ~~ 241 (539)
T COG1123 240 EE 241 (539)
T ss_pred HH
Confidence 53
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4e-32 Score=289.86 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=163.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|+
T Consensus 3 ~l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 3 LLQVSGLSK-SYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred eEEEeeeEE-EeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 699999999 775 4679999999999999999999999999999999999985 9999999862
Q ss_pred ----------EEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---
Q 048695 489 ----------LLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--- 551 (846)
Q Consensus 489 ----------~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--- 551 (846)
.+||++|++. +.+. |+.||+.+..... . .....+..++++++++.+|+. +..++.+.+||+
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 3799999974 4456 9999997643211 1 111223456789999999997 478999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+ ||+.+++.+.+|++++|+ +|+++..|++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ-QGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999984445899999 999999999999999999 9999999876
No 213
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.7e-32 Score=289.05 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=165.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC--c-cccceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER--I-PFTGSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~-~~~G~I~~~G---------- 487 (846)
+++++||++ .|+ ++.+|+|||+++++||++||+|+||||||||+++|+|+ . |++|+|.++|
T Consensus 7 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 7 ILEIKNLHA-SVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred eEEEEeEEE-EeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 799999999 775 46799999999999999999999999999999999997 3 4899999998
Q ss_pred -e--EEEEEeccCcCCCC-CHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHHHcCCC-cccccccC-CccC------
Q 048695 488 -L--LLCYVEKLDAHQTY-SVSESIQFSAALRVG----KTVNAMRRHIHVELVLNQLGLL-PYSNQLVG-SLHY------ 551 (846)
Q Consensus 488 -~--~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~-~lSg------ 551 (846)
+ .++|++|++.+++. |++|++.+....+.. ......+..++++++++.+||. +..++.++ +||+
T Consensus 81 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH
Confidence 1 37899999988898 999999876432110 0112223446788999999997 57788887 4998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.++|+++ +++|+|||+ ||+.+++... +|++++|+ +|++++.|+++
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~~tH~~~~~~~~~~d~i~~l~-~G~i~~~~~~~ 237 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKL-MTSENSIILITHYQRLLDYIKPDYVHVMQ-NGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHhhhCCEEEEEe-CCEEEEecChh
Confidence 999999999999999999999999999999 667999999 9999998876 89999999 99999999873
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=294.64 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=162.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G------ 487 (846)
.+++++|+++ .|+ ++.+|+|+|+++++||+++|+|+|||||||||++|+|+. |++|+|.++|
T Consensus 23 ~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 23 VVFDTQNLNL-WYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred eEEEEeeeEE-EEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 3799999999 775 467999999999999999999999999999999999986 3899999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC----CCcccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLG----LLPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~----L~~~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++.||+||+.++...+ ...+.+..++.+.+.++.++ +.+..++.+++||+
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 2489999998776559999999875432 11122233456778888875 44566888999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivsH~~~~i~~~~d~i~~l~-~G~i~~~g~~~ 251 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KK-DYSIIIVTHNMQQAARISDKTAFFL-NGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-Hc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999998 55 689999 999999999999999999 99999999863
No 215
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-32 Score=320.10 Aligned_cols=194 Identities=16% Similarity=0.213 Sum_probs=169.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G---------- 487 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 1 ~l~i~~l~~-~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVK-TFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEE-EeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 378999999 775 4679999999999999999999999999999999999975 699999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCccC----------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYS-NQLVGSLHY---------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~v~~lSg---------- 551 (846)
+.+|||+|++.+++. ||+||+.+....+... ..+.++..++++++++.+||.+.. ++++++|||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 248999999888888 9999999865432111 123344556789999999998765 678999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiitHd~~~~~~~~d~i~~l~-~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLNEVKAVCDTICVIR-DGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCcHHHHHHhCCEEEEEe-CCeEeeecCccc
Confidence 899999999999999999999999999999 677999999 999999999999999999 999999998865
No 216
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-32 Score=284.17 Aligned_cols=177 Identities=22% Similarity=0.300 Sum_probs=158.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LL 489 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~ 489 (846)
.+++++|+++ .|+ ++.+++++|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 10 ~~l~~~~l~~-~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~ 83 (214)
T PRK13543 10 PLLAAHALAF-SRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF 83 (214)
T ss_pred ceEEEeeEEE-ecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhc
Confidence 4799999999 675 4679999999999999999999999999999999999985 999999999 24
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. |++||+.+....+ +. ...+.++++++.++|.+..++.+++||+ .+|+
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred eEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999888888 9999999876443 11 1234678899999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+|+|||||+|||+.++..+.+.|+++ +++|.|+|+ ||+.+++.+++|++++|+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAH-LRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 99999999999999999999999999 677899999 999999999999999987
No 217
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=292.09 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=165.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+ ++.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ ++|+|.++|
T Consensus 7 ~l~~~~l~~-~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSF-YYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEE-EEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 699999999 775 4679999999999999999999999999999999999875 389999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++.||+||+.++...+. ..++.+..++++++++.+++. +..++.+.+||+
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred cchHhhhhheEEEecccccCCccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 14899999987775699999988765431 123344456788999999984 567888999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc----CCEEEEec
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK----EGHQAYFG 618 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~----~G~~v~~G 618 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++||++++|+. +|+++..|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 899999999999999999999999999998 55 589999 9999999999999999972 49999999
Q ss_pred CCC
Q 048695 619 PRG 621 (846)
Q Consensus 619 ~~~ 621 (846)
+++
T Consensus 237 ~~~ 239 (259)
T PRK14260 237 VTT 239 (259)
T ss_pred CHH
Confidence 873
No 218
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=324.63 Aligned_cols=199 Identities=18% Similarity=0.157 Sum_probs=172.0
Q ss_pred eEEEEeceeeeeeccCC------CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----
Q 048695 420 VTFVFEGLTFSRYEEGS------NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~------~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----- 487 (846)
.+|+++||++ .|+..+ .+++.+|+|||+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|
T Consensus 312 ~~L~~~~l~~-~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVT-RFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEE-EEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4799999999 775211 013579999999999999999999999999999999999985 999999998
Q ss_pred ----------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--
Q 048695 488 ----------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-- 551 (846)
Q Consensus 488 ----------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-- 551 (846)
+.+|||+|++ .+++. ||.|++.+....+ ...++++.+++++++|+.+||. +..++++++|||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 1489999996 57888 9999999875443 1113445567899999999996 678999999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|||||||+|||+.++.+++++|++++++.|.|||+ |||++++.++|||+++|+ +|++++.|+
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~-~G~iv~~g~ 547 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY-LGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEecC
Confidence 8999999999999999999999999999995455999999 999999999999999999 999999998
Q ss_pred CCC
Q 048695 620 RGS 622 (846)
Q Consensus 620 ~~~ 622 (846)
+++
T Consensus 548 ~~~ 550 (623)
T PRK10261 548 RRA 550 (623)
T ss_pred HHH
Confidence 753
No 219
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=289.82 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=164.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 10 ~i~~~~~~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 10 VFNISRLYL-YIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred heeeeeEEE-ecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 699999999 776 5789999999999999999999999999999999999975 775555543
Q ss_pred ------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 ------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 ------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.++|++|++.+++. ||+||+.+..... ...++++.+++++++++.+++. +..++.++.+|+
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 358999999998988 9999999875432 1123445556789999999996 456788899997
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.++||++++|+ +|+++..|+++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiilvsh~~~~~~~~~d~v~~l~-~g~i~~~g~~~ 237 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KN-EIAIVIVSHNPQQVARVADYVAFLY-NGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CcEEEEEECCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999998 54 689999 999999999999999999 99999999864
No 220
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.9e-32 Score=322.09 Aligned_cols=198 Identities=18% Similarity=0.178 Sum_probs=170.5
Q ss_pred eEEEEeceeeeeeccCCC------CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSN------ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~------~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------ 487 (846)
.+++++||++ .|+.+.. +++.+|+|||+++++||+++|+||||||||||+|+|+|+.|.+|+|.++|
T Consensus 274 ~~l~~~~l~~-~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQV-AFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEE-EeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcccc
Confidence 4799999999 7742110 13679999999999999999999999999999999999998999999998
Q ss_pred ---------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---
Q 048695 488 ---------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--- 551 (846)
+.+|||+|+. .+++. ||+||+.++...+.. ..++++.+++++++++.+||. +..++++++|||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 1389999996 47788 999999987543211 123445556789999999997 578999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..++++|++++++.|+|||+ ||+++++.++||++++|+ +|+++..|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~-~G~i~~~~~~ 510 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR-QGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE-CCEEEEEcCH
Confidence 8999999999999999999999999999994445899999 999999999999999999 9999999876
No 221
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-32 Score=293.28 Aligned_cols=195 Identities=18% Similarity=0.279 Sum_probs=163.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LL 489 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~ 489 (846)
.+++++||++ .|++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+|+|.++| +.
T Consensus 5 ~~l~~~~l~~-~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTV-TWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred ceEEEEeEEE-EecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 3699999999 7741 4679999999999999999999999999999999999974 999999999 25
Q ss_pred EEEEeccCcCC--CC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 490 LCYVEKLDAHQ--TY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 490 igyv~Q~~~~~--~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
++|++|++.+. .. +++|++.++...+.. ...+.++.+++++++++.+||.+..++.+++||+ .
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999997542 23 789998764211000 0112233445688999999999999999999998 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.+.||+++++ +|+++..|++++
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~-~~~g~tviivsH~~~~~~~~~d~v~~~--~G~i~~~g~~~~ 227 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYTVMV--KGTVLASGPTET 227 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEE--CCEEEeecCHHh
Confidence 99999999999999999999999999999 667999999 99999999999999665 699999998865
No 222
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-32 Score=291.49 Aligned_cols=186 Identities=17% Similarity=0.227 Sum_probs=154.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|+. +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +
T Consensus 1 i~~~~l~~-~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRF-RYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEE-ecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 46889999 6742 13579999999999999999999999999999999999985 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCccC----------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH-----IHVELVLNQL--GLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~v~~lSg---------- 551 (846)
.+||++|++.+++.||+||+.+... ....++.. ...++.++.+ ++++..++.+++||+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHH
Confidence 5999999987664499999987432 11111111 1234556666 667777888999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++. .||++++|+ +|++++.|++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~-~~d~v~~l~-~G~i~~~~~~ 220 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CA-GRTVIIIAHRLSTVK-NADRIIVME-KGRIVEQGSH 220 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHHHHH-hCCEEEEEE-CCEEEEEcCH
Confidence 899999999999999999999999999999 54 899999 99999985 699999999 9999999986
No 223
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=326.33 Aligned_cols=197 Identities=14% Similarity=0.175 Sum_probs=171.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++||++ .|+.. .+++++|+||||++++||++||+||||||||||+|+|+|+++ .+|+|.++|
T Consensus 12 ~l~v~~l~~-~y~~~-~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNI-AFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEE-EecCC-CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 799999999 78521 123579999999999999999999999999999999999985 899998865
Q ss_pred --------------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccC
Q 048695 488 --------------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVG 547 (846)
Q Consensus 488 --------------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~ 547 (846)
+.+|||+|++ .+++. ||+||+.++.+.+. +.++++.+++++++|+.+||.+ ..+++++
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1489999997 67888 99999999865431 3455566678999999999963 5789999
Q ss_pred CccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 548 SLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 548 ~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
+||| .+|++|||||||+|||+.++.+++++|++++++.|+|||+ |||.+++.++|||+++|+ +|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~-~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY-QGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee-CCe
Confidence 9998 9999999999999999999999999999995455999999 999999999999999999 999
Q ss_pred EEEecCCCC
Q 048695 614 QAYFGPRGS 622 (846)
Q Consensus 614 ~v~~G~~~~ 622 (846)
++..|++++
T Consensus 247 i~~~g~~~~ 255 (623)
T PRK10261 247 AVETGSVEQ 255 (623)
T ss_pred ecccCCHHH
Confidence 999887643
No 224
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.5e-32 Score=319.39 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=168.3
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEc------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGN------------ 486 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~------------ 486 (846)
|+++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+. |++|+|.++
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTK-KFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEE-EEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 46899999 785 467999999999999999999999999999999999995 589999986
Q ss_pred -----------C----------------------eEEEEEecc-CcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 048695 487 -----------V----------------------LLLCYVEKL-DAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVEL 531 (846)
Q Consensus 487 -----------G----------------------~~igyv~Q~-~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~ 531 (846)
| +.+|||+|+ +.+++. ||+||+.+....+ +.+.++.++++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~ 151 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 1 248999997 677888 9999999876443 2344555678999
Q ss_pred HHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh
Q 048695 532 VLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYAR 597 (846)
Q Consensus 532 ~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~ 597 (846)
+++.+||++..++.+++||| .+|++|||||||+|||+.++..++++|++++++.|+|||+ ||+.+.
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 99999999999999999998 8999999999999999999999999999995556999999 999999
Q ss_pred HHhhcCEEEEEccCCEEEEecCCC
Q 048695 598 TVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 598 i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+.++||++++|+ +|++++.|+++
T Consensus 232 ~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 232 IEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred HHHhcCEEEEEe-CCEEeeecCHH
Confidence 999999999999 99999988763
No 225
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=319.22 Aligned_cols=190 Identities=17% Similarity=0.184 Sum_probs=167.3
Q ss_pred eceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-------------eEE
Q 048695 425 EGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-------------LLL 490 (846)
Q Consensus 425 ~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-------------~~i 490 (846)
+||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+. |.+|+|.++| +.+
T Consensus 2 ~nl~~-~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISK-SFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEE-EeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 68888 675 467999999999999999999999999999999999997 4999999998 248
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
||++|+..+++. ||+||+.+..........+.++..++++++++.+||.+..++.+++||| .+|++
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 999999888888 9999998764211111123344456789999999999999999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|||||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.++||++++|+ +|+++..|++.+
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tvii~tH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~ 220 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILR-DGQWIATQPLAG 220 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEeecChhh
Confidence 9999999999999999999999999 677999999 999999999999999999 999999998866
No 226
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-32 Score=282.57 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=156.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
+++++|+++ .|+ ++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 ~l~~~~l~~-~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLAC-ERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEE-EEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 478999999 775 4679999999999999999999999999999999999975 999999998 3
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.++|++|++.+++. ||+||+.+....+ +. +..++++++++.+||.+..++.+++||+ .+|
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 58999999888888 9999999876443 11 2345788999999999889999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
++|+|||||+|||+.++..+.+.|+++ +++|.|||+ ||+.+++....+|++++.
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i~~~~~~~~~~~ 203 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQH-AEQGGMVILTTHQDLPVASDKVRKLRLG 203 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHH-HHCCCEEEEEecChhhhccCCceEEecc
Confidence 999999999999999999999999999 667899999 999999988777887763
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=306.69 Aligned_cols=199 Identities=22% Similarity=0.241 Sum_probs=177.7
Q ss_pred CceEEEEeceeeeeeccCC------CCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---
Q 048695 418 EPVTFVFEGLTFSRYEEGS------NESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~------~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--- 487 (846)
....++++||++ .|...+ .+...+++||||++++||++||+|+||||||||.|+|+|+.+ .+|+|.++|
T Consensus 277 ~~~ll~V~~l~k-~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSK-RYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeee-eeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 456899999999 776321 234689999999999999999999999999999999999985 999999988
Q ss_pred -----------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-
Q 048695 488 -----------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY- 551 (846)
Q Consensus 488 -----------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg- 551 (846)
+++-+|+|++ .+.|. ||++++.-....+.+ ...++++++++++++++||.. .++++++++||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 4678888886 67888 999999987766532 235677788999999999987 79999999999
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|++|||||.||+..+.+|+++|++++++.|.|.++ |||++.+..+||||++|+ +|+++..|
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~-~G~iVE~G 512 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY-DGRIVEEG 512 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE-CCeEEEeC
Confidence 9999999999999999999999999999998888999999 999999999999999999 99999999
Q ss_pred CC
Q 048695 619 PR 620 (846)
Q Consensus 619 ~~ 620 (846)
+.
T Consensus 513 ~~ 514 (539)
T COG1123 513 PT 514 (539)
T ss_pred CH
Confidence 76
No 228
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-32 Score=262.34 Aligned_cols=189 Identities=18% Similarity=0.141 Sum_probs=169.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.|+++++++ ..+ ...+...||++|++.+++||-+||+|||||||||||-+|+|+. |++|+|.+.|
T Consensus 6 ii~~~~l~k-tvg-~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSK-TVG-QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhh-hhc-CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 688999998 443 2334678999999999999999999999999999999999997 5999999998
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+|+|+|...+.|+ |..||+...+.++ +-+..+.++...+.|+.+||.+..+.++++|||
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~---ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhc---CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 689999999999999 9999999999887 323445566788999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
..|+|||.||||-+||..+..+|.++|-.+.++.|.|.|+ |||...+ .-|||.+-|. +|+++.
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~~r~~-~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQLRLR-SGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhheeeee-cceecc
Confidence 8999999999999999999999999999998899999999 9998665 5599999999 999864
No 229
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.2e-32 Score=283.67 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=157.6
Q ss_pred EEEEeceeeeeeccCCCC--CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc--C--------
Q 048695 421 TFVFEGLTFSRYEEGSNE--STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN--V-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~--~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~--G-------- 487 (846)
+++++||++ .|+..+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ .+|+|.++ |
T Consensus 1 ml~~~~l~~-~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSK-TFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEE-EeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc
Confidence 478999999 77521111 2579999999999999999999999999999999999985 99999997 3
Q ss_pred ----------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC----
Q 048695 488 ----------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY---- 551 (846)
Q Consensus 488 ----------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg---- 551 (846)
+.+||++|++.+++. ||+|++.+..... +..+++..++++++++.+||.+ ..++.+.+||+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 248999999988888 9999999865432 2334445567889999999986 46889999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+|++|+|||||+|||+.++..+.+.|+++ +++|+|||+ ||+.+++.++||+++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 899999999999999999999999999999 667999999 999999999999999875
No 230
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.2e-32 Score=284.88 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=153.8
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-c----ccceEEEcC----------eEEEEEeccCc--CCCC-C
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-P----FTGSLNGNV----------LLLCYVEKLDA--HQTY-S 503 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~----~~G~I~~~G----------~~igyv~Q~~~--~~~~-T 503 (846)
+|+|+|+++++||+++|+||||||||||+|+|+|+. | .+|+|.++| +.+||++|++. +.+. |
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999997 4 799999999 36999999974 5567 9
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC---cccccccCCccC-------------CCCcEEEEeCCCCCCC
Q 048695 504 VSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL---PYSNQLVGSLHY-------------HCPSILLLEEPLSGVD 567 (846)
Q Consensus 504 V~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD 567 (846)
++|++.+..... +...++.+++++++++.+||. +..++.+++||+ .+|++|+|||||+|||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 999998765432 122344456799999999998 578899999998 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 568 TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 568 ~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+.++..+.+.|++++++.|+|||+ ||+.+++..++|++++|+ +|+++..|++
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999994445899999 999999999999999999 9999999876
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.1e-32 Score=316.76 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=168.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc-C----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN-V---------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~-G---------- 487 (846)
.+|+++||++ .|++...+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++ |
T Consensus 278 ~~l~~~~l~~-~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSK-RYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEE-EeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 4799999999 774211123579999999999999999999999999999999999985 99999995 3
Q ss_pred --------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-----ccccccCCccC--
Q 048695 488 --------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-----YSNQLVGSLHY-- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~v~~lSg-- 551 (846)
+.+||++|++.+++. ||+||+.+...+. .++++.+++++++++.+||.+ ..++++++|||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGE 432 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHH
Confidence 138999999888888 9999999864321 233344567899999999975 57899999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|||||||+|||+.+++.+++.|++++++.|.|||+ ||+.+++.++|||+++|+ +|+++..|+
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~i~~~g~ 511 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR-DGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECC
Confidence 8999999999999999999999999999994455899999 999999999999999999 999999887
Q ss_pred C
Q 048695 620 R 620 (846)
Q Consensus 620 ~ 620 (846)
+
T Consensus 512 ~ 512 (520)
T TIGR03269 512 P 512 (520)
T ss_pred H
Confidence 6
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-32 Score=289.38 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=156.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 i~~~~l~~-~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTF-RYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEE-EeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 46889999 7752 12479999999999999999999999999999999999985 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCccC----------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH-----IHVELVLNQL--GLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~v~~lSg---------- 551 (846)
.++|++|++.+++.||+||+.+.... ...++.. ..+++.++.+ ++++..++.+.+||+
T Consensus 77 ~i~~~~q~~~~~~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFNDTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeeccccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHH
Confidence 58999999877755999999875321 1111111 1345667776 788888888999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |.|||+ ||+.+++.. ||++++|+ +|+++..|++
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~-~d~v~~l~-~G~i~~~~~~ 220 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERL-MK-NRTTFVIAHRLSTIEN-ADRIVVLE-DGKIVERGTH 220 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCHHHHhh-CCEEEEec-CCeEeeeCCH
Confidence 899999999999999999999999999999 54 889999 999999866 99999999 9999988876
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-31 Score=289.97 Aligned_cols=193 Identities=19% Similarity=0.189 Sum_probs=163.8
Q ss_pred CCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC---
Q 048695 417 VEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV--- 487 (846)
Q Consensus 417 ~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G--- 487 (846)
..+.+|+++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 16 ~~~~~l~~~nl~~-~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 16 PDHSVFEVEGVKV-FYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CCCceEEEeeEEE-EeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 3445899999999 775 4679999999999999999999999999999999999863 489999988
Q ss_pred -----------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-
Q 048695 488 -----------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY- 551 (846)
Q Consensus 488 -----------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg- 551 (846)
+.++|++|+..+++.||.||+.+....+ ... .+.++.+++.++.+++. +..++.+.+||+
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 2589999998776559999999875433 111 12334567788888873 567888999997
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc--------c
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT--------K 610 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~--------~ 610 (846)
.+|++|||||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.++|||+++|+ +
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhCCEEEEEeccccccccc
Confidence 999999999999999999999999999999 54 689999 999999999999999996 2
Q ss_pred CCEEEEecCCC
Q 048695 611 EGHQAYFGPRG 621 (846)
Q Consensus 611 ~G~~v~~G~~~ 621 (846)
+|+++..|+++
T Consensus 244 ~G~~~~~g~~~ 254 (274)
T PRK14265 244 RGKLVEFSPTE 254 (274)
T ss_pred CceEEEeCCHH
Confidence 79999999873
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.5e-32 Score=290.44 Aligned_cols=187 Identities=19% Similarity=0.239 Sum_probs=153.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 l~i~~l~~-~~~~--~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSF-RYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEE-ecCC--CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46889999 6752 113579999999999999999999999999999999999975 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCccC----------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHI-----HVELVLNQL--GLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~v~~lSg---------- 551 (846)
.++|++|++.+++.||+||+.+....+ ..++..+ .+.+.++.+ ++....++.+.+||+
T Consensus 78 ~i~~~~q~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFDGTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhhhhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHH
Confidence 599999998766459999998753211 1111111 123444444 566667788899998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ + +|+|||+ ||+.+++. .||++++|+ +|++++.|+.
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~-~g~~vi~~sh~~~~~~-~~d~v~~l~-~G~i~~~~~~ 221 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRA-M-KGRTTIVIAHRLSTIR-NADLIAVLQ-NGQVVEQGTH 221 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-c-CCCEEEEEeCCHHHHh-hCCEEEEEE-CCEEEEeCCH
Confidence 899999999999999999999999999999 5 6899999 99999986 899999999 9999998876
No 235
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=8.6e-32 Score=314.93 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=169.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCe---------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVL--------- 488 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~--------- 488 (846)
.+++++||++ .|+. .+++++|+|||+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+
T Consensus 258 ~~l~~~~l~~-~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTA-WDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCcc-cccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 4799999999 6731 113579999999999999999999999999999999999974 8999999981
Q ss_pred ----EEEEEeccC---cCCCC-CHHHHHHHHHhhhcCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCccC------
Q 048695 489 ----LLCYVEKLD---AHQTY-SVSESIQFSAALRVGK--TVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY------ 551 (846)
Q Consensus 489 ----~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg------ 551 (846)
.+||++|+. .+++. ||.||+.+........ ..++++.+++++++++.++|. +..++++++|||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 389999985 46777 9999998764211110 113344456789999999996 678999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSN 623 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~ 623 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..|++++.
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tvi~~sHd~~~~~~~~d~v~~l~-~G~i~~~~~~~~~ 492 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL-VQQGVAIIVISSELPEVLGLSDRVLVMH-EGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEeccccC
Confidence 899999999999999999999999999999 667999999 999999999999999999 9999999988763
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.98 E-value=9.6e-32 Score=316.18 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=168.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++|+++ .|+.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+++ ++|+|.++|
T Consensus 5 ~l~~~~l~~-~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSV-AFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEE-EecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 799999999 77521 113579999999999999999999999999999999999985 589999998
Q ss_pred ---------eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCccC-
Q 048695 488 ---------LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg- 551 (846)
+.+||++|++. +.+. ||+|++.+..... .+.++++..++++++++.+||.+ ..++++++|||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 14899999964 5677 9999998754332 12345566678999999999986 46899999998
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|||||||+|||+.++..++++|++++++.|+|||+ ||+.+++.++|||+++|+ +|++++.|
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~-~G~i~~~g 239 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ-NGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE-CCEEEEeC
Confidence 9999999999999999999999999999994445899999 999999999999999999 99999998
Q ss_pred CCC
Q 048695 619 PRG 621 (846)
Q Consensus 619 ~~~ 621 (846)
+++
T Consensus 240 ~~~ 242 (529)
T PRK15134 240 RAA 242 (529)
T ss_pred CHH
Confidence 774
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.4e-31 Score=285.09 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=164.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---c---ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---P---FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~---~~G~I~~~G------ 487 (846)
++++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. | ++|+|.++|
T Consensus 2 ~~l~~~~v~~-~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNT-YFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEE-EeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 3689999999 775 467999999999999999999999999999999999985 3 789999999
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg---- 551 (846)
+.++|++|++.+++.|++||+.+....+ ...+.+..+++++++++.+||. +..++.+++||+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 2489999998777669999998865432 1122344556789999999984 346788899998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |.|||+ ||+.+++.+.+|++++|+ +|++++.|+++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~-~~tiii~sh~~~~~~~~~~~i~~l~-~G~i~~~g~~~ 230 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KE-DYTIVIVTHNMQQATRVSKYTSFFL-NGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEECCHHHHHhhcCEEEEEE-CCeEEEeCCHH
Confidence 999999999999999999999999999998 54 789999 999999999999999999 99999999863
No 238
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=5.8e-32 Score=278.67 Aligned_cols=172 Identities=22% Similarity=0.226 Sum_probs=153.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++||++ .|+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 1 l~i~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTC-ERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEE-EeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 46899999 775 4679999999999999999999999999999999999985 999999998 36
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. ||+||+.+.... ...++++++++.+||.+..++++.++|+ .+|+
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999888888 999999875321 0235688999999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+|+|||||+|||+.++..+.+.|+++ +++|.|+|+ ||+..+....+|+++++.
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiii~sH~~~~~~~~~~~~~~~~ 199 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGH-CARGGMVVLTTHQDLGLSEAGARELDLG 199 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCchhhhhccceeEecc
Confidence 99999999999999999999999998 667899999 999888999999998763
No 239
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.5e-31 Score=287.26 Aligned_cols=188 Identities=20% Similarity=0.179 Sum_probs=161.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ ++|+|.++|
T Consensus 10 ~l~i~~v~~-~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNV-YYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEE-EEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 799999999 775 4679999999999999999999999999999999999852 689999998
Q ss_pred -------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCccC-----
Q 048695 488 -------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL----PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 -------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg----- 551 (846)
+.+||++|++.+++.||+||+.+....+ ... .+..++++++++.+++. +..++.+++||+
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cChHHHhhhEEEEccCCccccccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 2489999998776569999999875432 111 23345677888888874 356788999998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc--------cCCEE
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT--------KEGHQ 614 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~--------~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|||+ ||+.+++.++|||+++|+ ++|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 899999999999999999999999999999 55 479999 999999999999999997 26999
Q ss_pred EEecCC
Q 048695 615 AYFGPR 620 (846)
Q Consensus 615 v~~G~~ 620 (846)
+..|++
T Consensus 238 ~~~~~~ 243 (264)
T PRK14243 238 VEFDRT 243 (264)
T ss_pred EEeCCH
Confidence 999986
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.3e-31 Score=290.10 Aligned_cols=194 Identities=20% Similarity=0.194 Sum_probs=164.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc------cccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI------PFTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~------~~~G~I~~~G----- 487 (846)
+.+|+++||++ .|+ ++.+|+++|+++++||+++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 43 ~~~l~i~nl~~-~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDV-YYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEE-EeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 44799999999 775 467999999999999999999999999999999999996 3799999998
Q ss_pred ---------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCC---------CCC-HHHHHHHHHHHHHHcCCC----ccccc
Q 048695 488 ---------LLLCYVEKLDAHQTYSVSESIQFSAALRVGK---------TVN-AMRRHIHVELVLNQLGLL----PYSNQ 544 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~----~~~~~ 544 (846)
+.++|++|+..+++.||+||+.+....+... ..+ .+..+++++++++.++|. +..++
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred ccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 2489999998776669999999875432100 011 223356789999999884 45688
Q ss_pred ccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEE-EEEc
Q 048695 545 LVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLA-LILT 609 (846)
Q Consensus 545 ~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~v-llL~ 609 (846)
.+++||+ .+|+||||||||+|||+.++..+.++|+++ ++ +.|||+ ||+.+++.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~-~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AE-EYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 8999998 999999999999999999999999999999 55 488888 99999999999997 5779
Q ss_pred cCCEEEEecCCC
Q 048695 610 KEGHQAYFGPRG 621 (846)
Q Consensus 610 ~~G~~v~~G~~~ 621 (846)
+|+++..|+++
T Consensus 275 -~G~i~~~g~~~ 285 (305)
T PRK14264 275 -GGELVEYDDTD 285 (305)
T ss_pred -CCEEEEeCCHH
Confidence 99999999864
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=6.5e-32 Score=255.92 Aligned_cols=191 Identities=21% Similarity=0.213 Sum_probs=176.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++|+++ .|+ ..++|.||+++.+.||.+.|+||||||||||+++|.=+. |.+|+..+.|
T Consensus 2 sirv~~in~-~yg-----~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINC-FYG-----AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccc-ccc-----cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 488999999 887 689999999999999999999999999999999998875 6999999977
Q ss_pred ------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---------
Q 048695 488 ------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--------- 551 (846)
+.+|+|+|+..++|+ ||.|||.-+. .|. .++++++.+.+..++|++|.|.+++|+.+-.|||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 679999999999999 9999997643 221 2678899999999999999999999999999998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|++||||++|||+-..++.++++++ +..|.|-++ ||..+.+.+.+.|++.|. +|+++..|+..
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel-~~tgitqvivthev~va~k~as~vvyme-~g~ive~g~a~ 226 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-AETGITQVIVTHEVEVARKTASRVVYME-NGHIVEQGDAS 226 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH-HhcCceEEEEEeehhHHHhhhhheEeee-cCeeEeecchh
Confidence 899999999999999999999999999999 899999888 999999999999999999 99999999874
No 242
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.5e-31 Score=285.66 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=163.7
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G----- 487 (846)
...|+++|+++ .|+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++|
T Consensus 14 ~~~l~~~~l~~-~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNF-YYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEE-EEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 34699999999 775 4679999999999999999999999999999999999963 689999976
Q ss_pred -----------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHHHcCCC----cccccccCCccC
Q 048695 488 -----------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNA-MRRHIHVELVLNQLGLL----PYSNQLVGSLHY 551 (846)
Q Consensus 488 -----------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~-~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg 551 (846)
+.+||++|++.+++.||+||+.+....+ +.+. +..+++++++++.+++. +..++.+++||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 2489999998777669999999875432 2222 23345788888888874 456788899998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.++|||+++|+ +|+++..
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-~~tiiivth~~~~~~~~~d~i~~l~-~G~i~~~ 241 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KN-KVTILIVTHNMQQAARVSDYTAYMY-MGELIEF 241 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-Hh-CCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEe
Confidence 999999999999999999999999999999 55 689999 999999999999999999 9999999
Q ss_pred cCCC
Q 048695 618 GPRG 621 (846)
Q Consensus 618 G~~~ 621 (846)
|+.+
T Consensus 242 g~~~ 245 (265)
T PRK14252 242 GATD 245 (265)
T ss_pred CCHH
Confidence 8863
No 243
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.98 E-value=2.2e-31 Score=283.19 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=160.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G---------- 487 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. |.+|+|.++|
T Consensus 1 ~i~~~nl~~-~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHV-SVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEE-EeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 478999999 775 467999999999999999999999999999999999994 5999999998
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHh-hhc--CC-CCCHHHHHHHHHHHHHHcCCC-cccccccC-CccC------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAA-LRV--GK-TVNAMRRHIHVELVLNQLGLL-PYSNQLVG-SLHY------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~-lr~--~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~-~lSg------ 551 (846)
+.++|++|++.+++. |+.+++.+... ++. .. .....+..++++++++.++|. +..++.+. +||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 249999999888887 88777654321 110 00 012223456788999999995 56777775 7998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEEEEecCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+.+... +|++++|+ +|++++.|+.
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l-~~~~~tiii~sH~~~~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 999999999999999999999999999999 677899999 9999998887 89999999 9999999986
No 244
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3e-31 Score=284.23 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=163.8
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC-----
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV----- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G----- 487 (846)
+..+.++++++ .|+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++|
T Consensus 6 ~~~~~~~~~~~-~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKI-FYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEE-EeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 45689999998 775 5689999999999999999999999999999999999973 599999998
Q ss_pred ---------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCccC---
Q 048695 488 ---------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP----YSNQLVGSLHY--- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v~~lSg--- 551 (846)
+.++|++|++.++..|++||+.++...+ .. .++..++++++++.++|.+ ..++.+++||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~---~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN---RY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCccccccHHHHHHHHHhhc---Cc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 2489999998777339999999876543 11 2334567899999999864 34567788987
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc-------cCCE
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT-------KEGH 613 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~-------~~G~ 613 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|+|+ ||+.+++.++|||+++|+ .+|+
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~ 233 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGY 233 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCce
Confidence 999999999999999999999999999998 54 789988 999999999999999994 3899
Q ss_pred EEEecCCC
Q 048695 614 QAYFGPRG 621 (846)
Q Consensus 614 ~v~~G~~~ 621 (846)
++..|+.+
T Consensus 234 i~~~g~~~ 241 (261)
T PRK14263 234 LVEMGPTA 241 (261)
T ss_pred EEEeCCHH
Confidence 99999863
No 245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.98 E-value=6e-32 Score=282.31 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=152.3
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ .++.+|+|+|+++++|++++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 3 l~~~~l~~-~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSF-SYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEE-EcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 78999999 6751 12579999999999999999999999999999999999985 999999999 2
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc-----------CCccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLV-----------GSLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-----------~~lSg------ 551 (846)
.++|++|++.+++.||.||+.+... ... .++++++++.+++.+..++.+ ++||+
T Consensus 79 ~i~~~~q~~~~~~~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFYGTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCccccchHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH
Confidence 5899999987664599999976421 111 234667888899987776654 58887
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++|+|||||+|||+.++..+++.|+++ ++. +|||+ ||+.+++ +.||++++|+ +|++++.|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~-~tii~~sH~~~~~-~~~d~v~~l~-~g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGD-KTLIIITHRPSLL-DLVDRIIVMD-SGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCC-CEEEEEeCCHHHH-HhCCEEEEEe-CCeEeecC
Confidence 899999999999999999999999999998 554 89999 9999876 7999999999 99998654
No 246
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=9.2e-32 Score=289.39 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=159.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~ 489 (846)
++++|+++ .|.+ +++.+|+|||+++++||+++|+|+|||||||||++|+|+.+.+|+|.++| +.
T Consensus 3 i~~~nls~-~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 3 MTVKDLTA-KYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred EEEEEEEE-EeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhh
Confidence 78999999 7742 14579999999999999999999999999999999999988899999999 46
Q ss_pred EEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-----------ccC-------
Q 048695 490 LCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGS-----------LHY------- 551 (846)
Q Consensus 490 igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~-----------lSg------- 551 (846)
++||+|++.+++.||+||+.... ..+ .+++.+.++.+||.+..++.+++ ||+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 99999999888669999996321 112 23567888999999888888876 777
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||+|||||+|||+.++..+.+.|+++ . .++|||+ ||+.+.+.. |||+++|+ +|++++.|++.+
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~-~-~~~tii~isH~~~~i~~-~dri~vl~-~G~i~~~g~~~~ 222 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA-F-ADCTVILSEHRIEAMLE-CQRFLVIE-ENKVRQYDSIQK 222 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh-c-CCCEEEEEECCHHHHHh-CCEEEEec-CCeEeecCCHHH
Confidence 999999999999999999999999999987 4 4899999 999988865 99999999 999999999854
No 247
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=9.8e-32 Score=278.24 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=153.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe---------EE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL---------LL 490 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~---------~i 490 (846)
+++++||++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|. .+
T Consensus 2 ~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (207)
T PRK13539 2 MLEGEDLAC-VRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75 (207)
T ss_pred EEEEEeEEE-EEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc
Confidence 689999999 775 4679999999999999999999999999999999999975 9999999992 48
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcE
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSI 556 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~i 556 (846)
+|++|++.+++. ||+||+.+....+ +. ..++++++++.+||.+..+++++++|+ .+|++
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998888888 9999998865443 11 123588999999999888999999998 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
|+|||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++.. |+++.+.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAH-LAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 9999999999999999999999998 667999999 999998876 9998886
No 248
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=291.78 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=164.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
.+++++|+++ .|.. +.+.+|+|||+++++||++||+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 79 ~~i~~~nls~-~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 79 NVFEIRNFNF-WYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred ceEEEEeeEE-EecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3799999999 7742 24579999999999999999999999999999999999973 589999998
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHHHcCCC----cccccccCCccC---
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNA-MRRHIHVELVLNQLGLL----PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~-~~~~~~v~~~l~~l~L~----~~~~~~v~~lSg--- 551 (846)
+.++||+|++.+++.|++||+.|+.... +.+. +...+.++++++.++|. +..++...+|||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 3599999999877559999999875432 2222 22344578889998874 356778888998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+||+|||||+|||+.+...+.+.|+++ ++ ++|||+ ||+++++.+.|||+++|+ +|+++..|++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l-~~-~~Tii~iTH~l~~i~~~~Driivl~-~G~i~e~g~~ 308 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL-KK-KYSIIIVTHSMAQAQRISDETVFFY-QGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999998 54 689999 999999999999999999 9999999998
Q ss_pred C
Q 048695 621 G 621 (846)
Q Consensus 621 ~ 621 (846)
.
T Consensus 309 ~ 309 (329)
T PRK14257 309 K 309 (329)
T ss_pred H
Confidence 4
No 249
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=6.3e-32 Score=283.40 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=154.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .|++. +++.+|+++|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 10 ~~l~~~~l~~-~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 10 GIVKFQNVTF-AYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred ceEEEEEEEE-EeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 4799999999 77521 12469999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCccC-------------
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQL--GLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~v~~lSg------------- 551 (846)
+.++|++|++.+++.||+||+.+...........+......+++.++.+ |+++..++.+.+||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 3599999998776559999998754311000000111122367888988 888888999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ ++|+|+ ||+.+++. .||++++|+ +|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDW-PE-RRTVLVIAHRLSTVE-RADQILVLD-GGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEECCHHHHH-hCCEEEEec-CCcC
Confidence 999999999999999999999999999998 55 589999 99999986 499999999 8864
No 250
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-31 Score=301.08 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=166.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
+++++||++ .+++ +..+.+|+|||+++++|++++|+|||||||||||++|+|+.+ .+|+|.++|+. .++.+...+
T Consensus 21 mL~lknL~~-~~~~--~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~-~~i~~~~~l 96 (549)
T PRK13545 21 FDKLKDLFF-RSKD--GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-ALIAISSGL 96 (549)
T ss_pred eeEEEEEEE-ecCC--CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe-eeEEecccc
Confidence 799999998 6652 123579999999999999999999999999999999999985 99999999943 233444556
Q ss_pred CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCC
Q 048695 500 QTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSG 565 (846)
Q Consensus 500 ~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsg 565 (846)
.+. ||+||+.+....+ +.+.++..++++++++.++|.+..++++++||+ .+|++|+|||||+|
T Consensus 97 ~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 97 NGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred CCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 677 9999998865432 234455566788999999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
||+.++..+++.|+++ ++.|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 174 LD~~sr~~LlelL~el-~~~G~TIIIVSHdl~~i~~l~DrIivL~-~GkIv~~G~~~e 229 (549)
T PRK13545 174 GDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLH-YGQVKEYGDIKE 229 (549)
T ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 9999999999999999 677999999 999999999999999999 999999998754
No 251
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.9e-32 Score=283.17 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=151.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 ~l~~~~l~~-~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNF-SYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEE-ecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 378999999 6741 3469999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCccC---------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHI-----HVELVLNQL--GLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~v~~lSg--------- 551 (846)
+.++|++|++.+++.||+||+.+.... ...++..+ ..++.++.+ |++...++.+.+||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence 359999999876655999999875321 11111111 123344444 555556677889998
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+++.|+++ ++ |+|||+ ||+.+++. .||++++|+ +|++++.|+.
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~~~~~~~~ 221 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MK-GRTSIIIAHRLSTIK-NADKILVLD-DGKIIEEGTH 221 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCHHHHh-hCCEEEEEe-CCeEEEeCCH
Confidence 999999999999999999999999999998 54 899999 99998885 599999999 9999988765
No 252
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9.4e-33 Score=263.63 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=162.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++++.| .- .+..+|+++|+.+++||..+|.||||||||||+|++|.+.+ ++|++++.|
T Consensus 3 lle~kq~~y-~a-----~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~R 76 (223)
T COG4619 3 LLELKQVGY-LA-----GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76 (223)
T ss_pred chHHHHHHh-hc-----CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHH
Confidence 456677776 33 26899999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~ 553 (846)
++++||.|.+.+++.||++|+.|...+|..+ ..++...+.|++++|.+ ..++.+.+||| .-
T Consensus 77 q~VsY~~Q~paLfg~tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred HHHHHHHcCccccccchhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcC
Confidence 5799999999999999999999998887321 13456778999999986 57899999998 89
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
|+||+||||||+||+.+++.|-++|.++.++++.+++. |||.+++.+.+|+++-+. .|++
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~-~G~~ 212 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ-PGHA 212 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec-cCcc
Confidence 99999999999999999999999999997788999999 999999999999999999 7765
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-31 Score=311.69 Aligned_cols=191 Identities=16% Similarity=0.239 Sum_probs=164.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .+ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 264 ~~l~~~~l~~-~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTS-RD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccc-cC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4799999998 43 238999999999999999999999999999999999975 999999998
Q ss_pred --eEEEEEecc---CcCCCC-CHHHHHHHHHhhh---cCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccCCccC---
Q 048695 488 --LLLCYVEKL---DAHQTY-SVSESIQFSAALR---VGK--T-VNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --~~igyv~Q~---~~~~~~-TV~E~l~f~a~lr---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--- 551 (846)
+.+|||+|+ ..+++. ||+||+.+....+ ... + .+.++.+++++++++.+||. +..++++++|||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 148999998 457788 9999998754321 000 1 12233345688999999997 789999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..++++|+++ +++|.|||+ |||.+++.++|||+++|+ +|+++..++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIAVFC-EGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH-HHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEEEEEecC
Confidence 899999999999999999999999999999 567999999 999999999999999999 9999998876
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-31 Score=283.11 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=152.7
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +
T Consensus 1 l~~~~l~~-~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTF-AYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEE-EeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 46889999 6741 3569999999999999999999999999999999999985 999999999 2
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCccC----------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHI-----HVELVLNQL--GLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~v~~lSg---------- 551 (846)
.+||++|+..+++.||+||+.+.... .+.++..+ .+++.++.+ ++++..++.+.+||+
T Consensus 76 ~i~~~~q~~~~~~~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFNDTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhcchHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 48999999877755999999875321 11111111 233444444 556666777889997
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ |+|||+ ||+.+++.. ||++++|+ +|+++..|+.
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sh~~~~~~~-~d~~~~l~-~g~i~~~~~~ 219 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDV-SK-GRTTIVIAHRLSTIVN-ADKIIVLK-DGRIVERGTH 219 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHHHHHh-CCEEEEEE-CCEEEeeCCH
Confidence 999999999999999999999999999999 66 899999 999999865 99999999 9999988876
No 255
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.3e-31 Score=278.16 Aligned_cols=180 Identities=17% Similarity=0.242 Sum_probs=150.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 3 l~~~~l~~-~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 3 IEFKNVSL-RYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEEE-ecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 78999999 7752 13579999999999999999999999999999999999975 999999998 4
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-----------ccccCCccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-----------NQLVGSLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~v~~lSg------ 551 (846)
.++|++|++.+++.||+||+.+.. ... .+++.+.++.+++.+.. ++.+.+||+
T Consensus 79 ~i~~~~q~~~l~~~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~ 148 (221)
T cd03244 79 RISIIPQDPVLFSGTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL 148 (221)
T ss_pred hEEEECCCCccccchHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH
Confidence 689999998866559999997431 111 12355556666665433 467888987
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+|||||+|||+.++..+.+.|+++ ++ +.|||+ ||+.+++.. ||++++|+ +|+++..|+
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~-~d~i~~l~-~g~~~~~~~ 220 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREA-FK-DCTVLTIAHRLDTIID-SDRILVLD-KGRVVEFDS 220 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHHHHhh-CCEEEEEE-CCeEEecCC
Confidence 999999999999999999999999999998 54 688888 999999865 99999999 999998875
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=3.5e-31 Score=309.55 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=167.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV---------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G---------- 487 (846)
.+++++|+++ .|+. ++++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 256 ~~l~~~~l~~-~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTC-WDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCcc-cccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4799999998 6631 013579999999999999999999999999999999999974 799999998
Q ss_pred ---eEEEEEeccC---cCCCC-CHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC------
Q 048695 488 ---LLLCYVEKLD---AHQTY-SVSESIQFSAALRVG--KTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg------ 551 (846)
+.+||++|+. .+++. ||+||+.++..-... ......+.+++++++++.++|.+ ..++++++|||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 412 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence 2389999995 47888 999999886421110 01223444567899999999974 68999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ +++|.|||+ |||.+++.++||++++|+ +|+++..++.++
T Consensus 413 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i~~~~~~~~ 489 (500)
T TIGR02633 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL-AQEGVAIIVVSSELAEVLGLSDRVLVIG-EGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 899999999999999999999999999999 667999999 999999999999999999 999998886643
No 257
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1e-31 Score=262.51 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=172.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
..|+++||++ +++ +-.+|+++|+++.+||+-+|+|||||||||+|++|+|..+ .+|+++++|
T Consensus 4 ~iL~~~~vsV-sF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSV-SFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEE-EEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 5799999999 787 6899999999999999999999999999999999999985 899999999
Q ss_pred ---eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------
Q 048695 488 ---LLLCYVEKLDAHQTY-SVSESIQFSAALRVGK-----TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------- 551 (846)
..||--+|.+..|+. ||+|||..+.+...+- .....+.+++++++|+..||.+.+|+..+.||.
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhh
Confidence 468888999999999 9999999876533210 112344557899999999999999999999986
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++|++|+||||++|+-.....+.-++|+++ + .+++|++ .||+..+.+++|+|.+|+ +|.+.+.|+.++
T Consensus 158 IGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l-a-~~hsilVVEHDM~Fvr~~A~~VTVlh-~G~VL~EGsld~ 232 (249)
T COG4674 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL-A-GKHSILVVEHDMGFVREIADKVTVLH-EGSVLAEGSLDE 232 (249)
T ss_pred hheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH-h-cCceEEEEeccHHHHHHhhheeEEEe-ccceeecccHHH
Confidence 999999999999999999999999999999 4 3578888 999999999999999999 999999999864
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.9e-31 Score=269.23 Aligned_cols=175 Identities=31% Similarity=0.468 Sum_probs=142.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcC--------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNV--------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G--------~~ 489 (846)
.++++|+++ .|++. .+++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++| +.
T Consensus 3 ~l~~~~l~~-~~~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (192)
T cd03232 3 VLTWKNLNY-TVPVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS 80 (192)
T ss_pred EEEEeeeEE-EecCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhc
Confidence 589999999 77521 11257999999999999999999999999999999999974 4899999998 45
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCH
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDT 568 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~ 568 (846)
++|++|++.+++. ||+||+.+...++ ..+..+++ ++.-+...+ .+|++|+|||||+|||+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~LSgGe~q-rv~la~al~---------------~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALLR---GLSVEQRK-RLTIGVELA---------------AKPSILFLDEPTSGLDS 141 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHHh---cCCHHHhH-HHHHHHHHh---------------cCCcEEEEeCCCcCCCH
Confidence 8999999888888 9999999864322 12222221 110000000 79999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChh-hHHhhcCEEEEEccC-CEEEEec
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYA-RTVPFFDLALILTKE-GHQAYFG 618 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~-~i~~~~D~vllL~~~-G~~v~~G 618 (846)
.++..+++.|+++ ++.|+|||+ ||+.+ ++.+.||++++|+ + |++++.|
T Consensus 142 ~~~~~l~~~l~~~-~~~~~tiiivtH~~~~~~~~~~d~i~~l~-~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKL-ADSGQAILCTIHQPSASIFEKFDRLLLLK-RGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEEEcCChHHHHhhCCEEEEEc-CCCeEEeCC
Confidence 9999999999999 667899999 99988 4788999999999 8 9999865
No 259
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.5e-31 Score=311.87 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=161.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++|+++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 3 ~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTF-RLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEE-EcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 699999999 785 4569999999999999999999999999999999999975 999999987
Q ss_pred eEEEEEeccCcC--C------CC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------
Q 048695 488 LLLCYVEKLDAH--Q------TY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~--~------~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------- 551 (846)
+.+||++|++.. + .. ||+|++.+. .+..++++++++.+||++..++++++|||
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 238999998542 1 14 888877532 12245788999999999999999999998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+.+.|+++ +++|.|||+ ||+.+++.+.||++++|+ +|+++..|++++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvii~tH~~~~~~~~~d~v~~l~-~G~i~~~~~~~~ 221 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLA-DCTLAETGEREE 221 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEE-CCEEEEeCCHHH
Confidence 899999999999999999999999999999 667999999 999999999999999999 999999988643
No 260
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-31 Score=273.79 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=164.4
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-----------eEEEEEe-ccCcCCCC-CHH
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-----------LLLCYVE-KLDAHQTY-SVS 505 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-----------~~igyv~-Q~~~~~~~-TV~ 505 (846)
..+++||||++++|++++++|||||||||+||+|+|++ |++|.|.++| +.+++|+ |.-.+.-. -+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 45899999999999999999999999999999999986 7999999999 5677776 33333333 567
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHH
Q 048695 506 ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTL 572 (846)
Q Consensus 506 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~ 572 (846)
|.+.....++ .++.++-+++.+.+.+.|+|++..+.++..||- ++|+||||||||-|||..++.
T Consensus 117 ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~ 193 (325)
T COG4586 117 DSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQA 193 (325)
T ss_pred hhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHH
Confidence 7777665555 678888899999999999999999999999985 999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
.|.+.|++..++.+.||+. ||+++++.++||||++++ .|+++|+|+. ..+.+-|..
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gqlv~dg~l----~~l~~~f~~ 250 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQLVFDGTL----AQLQEQFGP 250 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCcEeecccH----HHHHHHhCC
Confidence 9999999998888999999 999999999999999999 9999999998 566665554
No 261
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=8.5e-31 Score=268.49 Aligned_cols=176 Identities=31% Similarity=0.479 Sum_probs=143.3
Q ss_pred EEEEeceeeeeeccC-CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--c-ccceEEEcC---------
Q 048695 421 TFVFEGLTFSRYEEG-SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--P-FTGSLNGNV--------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~-~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~-~~G~I~~~G--------- 487 (846)
.++++||++ .|+.. ...++.+|+|+|+++++||+++|+||||||||||+++|+|+. + .+|+|.++|
T Consensus 3 ~l~~~~ls~-~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTV-TVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEE-EEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 589999999 77521 011367999999999999999999999999999999999997 6 999999998
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGV 566 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgL 566 (846)
+.++|++|++.+++. |++||+.+...++ ..+..+++ ++.-+...+ .+|++|+|||||+||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---~LS~G~~q-rv~laral~---------------~~p~illlDEP~~~L 142 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLR---GLSGGERK-RVSIALELV---------------SNPSLLFLDEPTSGL 142 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHhc---cCCHHHHH-HHHHHHHHH---------------cCCCEEEEeCCCcCC
Confidence 458999999988888 9999998765432 22322221 111000000 789999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEE-ecChh-hHHhhcCEEEEEccCCEEEEec
Q 048695 567 DTIGTLTILNILSLCQIRSGHYCLS-NTPYA-RTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 567 D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~-~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+.++..+.+.|+++ +++|+|+|+ +|+.+ ++.+.+|++++|+ +|++++.|
T Consensus 143 D~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRL-ADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 999999999999999 666999999 99986 7889999999999 99998764
No 262
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.6e-31 Score=307.09 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=165.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
..++++|++. +.+++|+|+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 256 ~~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325 (501)
T ss_pred cEEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHH
Confidence 4689999875 248999999999999999999999999999999999985 999999998
Q ss_pred --eEEEEEeccC---cCCCC-CHHHHHHHHHhhhc-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCccC------
Q 048695 488 --LLLCYVEKLD---AHQTY-SVSESIQFSAALRV-GKT--VNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY------ 551 (846)
Q Consensus 488 --~~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg------ 551 (846)
+.+||++|++ .+++. ||.||+.++...+. +.+ ....+.+++++++++.+||. +..++++++|||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH
Confidence 2479999985 47888 99999987543211 001 12233345789999999994 789999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ ++.|.|||+ |||.+++.++||++++|+ +|++++.|++++
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviivsHd~~~~~~~~d~i~~l~-~g~i~~~~~~~~ 482 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVADRIVVMR-EGRIAGELAREQ 482 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHhhCCEEEEEE-CCEEEEEEcccc
Confidence 899999999999999999999999999999 677999999 999999999999999999 999999998876
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=4.7e-31 Score=271.26 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=147.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLAC-SRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEE-EEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 46889999 675 5689999999999999999999999999999999999975 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
++|++|++.+++. ||+||+.+....+ . . + .++++++++.+||.+..++.+++||+ .+|+
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~--~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIH---G--G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHc---C--C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999888888 9999998865443 1 1 1 34678999999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEE
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALI 607 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vll 607 (846)
+|+|||||+|||+.++..+.+.|+++ +++|.|||+ ||+...+ .+++++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAH-LARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEEEcccccc--cceEEee
Confidence 99999999999999999999999999 677899999 8876544 3566654
No 264
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=5.9e-31 Score=268.70 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=135.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------eEEEEEeccCc-CCCC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------------LLLCYVEKLDA-HQTY 502 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------------~~igyv~Q~~~-~~~~ 502 (846)
++.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.++|++|++. ....
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 4679999999999999999999999999999999999985 999999998 24899999973 2335
Q ss_pred -CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCH
Q 048695 503 -SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDT 568 (846)
Q Consensus 503 -TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~ 568 (846)
||+||+.+....+ +.+.++..++++++++.+||.+..++++++||+ .+|++|+|||||+|||+
T Consensus 84 ~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 84 ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 9999999875432 234455566789999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChhh
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYAR 597 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~ 597 (846)
.++..+.+.|+++ +++|+|||+ ||+.++
T Consensus 161 ~~~~~~~~~l~~~-~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRL-RAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEEeecccc
Confidence 9999999999999 667999999 998764
No 265
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=305.06 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=165.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .+|+|+|+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4789999875 26999999999999999999999999999999999974 999999998
Q ss_pred --eEEEEEeccC---cCCCC-CHHHHHHHHHhhhcC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC------
Q 048695 488 --LLLCYVEKLD---AHQTY-SVSESIQFSAALRVG---KTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY------ 551 (846)
Q Consensus 488 --~~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg------ 551 (846)
+.+|||+|++ .+++. ||+||+.+....... ...+.++.+++++++++.+||. +..++++++|||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH
Confidence 1489999995 46777 999999875321110 0122334456789999999995 689999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSN 623 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~ 623 (846)
.+|++|||||||+|||+.++..+.++|+++ +++|.|||+ ||+.+++.++||++++|+ +|+++..|++++.
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~~~~~~~~ 482 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF-KAEGLSIILVSSEMPEVLGMSDRILVMH-EGRISGEFTREQA 482 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH-HHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEEEEEeccccC
Confidence 899999999999999999999999999999 667999999 999999999999999999 9999999988763
No 266
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=8.1e-31 Score=269.95 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=148.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
+++++|+++ .|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 ml~~~~l~~-~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDF-DYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEE-EeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 478999999 775 4679999999999999999999999999999999999985 999999998 4
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.++|++|+..+++. ||+||+.+..... .. ..+++++++.+++.+..++++++||+ .+|
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 69999999888888 9999999864221 11 24688999999999888999999997 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEE
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLAL 606 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vl 606 (846)
++|+|||||+|||+.++..+.+.|+++ ++.|.|||+ ||+...+ +.+|...
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~-~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEH-RAKGGAVLLTSHQDLPL-NKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHH-HHcCCEEEEEeCCchhc-cccchhh
Confidence 999999999999999999999999998 667999999 9998766 4477543
No 267
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-30 Score=262.94 Aligned_cols=158 Identities=19% Similarity=0.280 Sum_probs=133.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSK-RYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEE-EEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 46889999 675 3579999999999999999999999999999999999985 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHH-HHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHI-HVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD 567 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~-~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD 567 (846)
++|++|++.+++. |++||+.+ +..+++. .+-..+- .+|++|+|||||+|||
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~L----------S~G~~qrv~laral~-----------------~~p~illlDEPt~~LD 127 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLKL----------SGGMKQRLALAQALL-----------------HDPELLILDEPTSGLD 127 (173)
T ss_pred EEEEecCCccccCCcHHHHhhc----------CHHHHHHHHHHHHHH-----------------cCCCEEEEeCCccCCC
Confidence 8999999988888 99999862 1222211 1111111 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 568 TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 568 ~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
+.++..+.+.|+++ +++|.|+|+ ||+.+++.+.+|++++|+ +|++
T Consensus 128 ~~~~~~l~~~l~~~-~~~g~tiii~th~~~~~~~~~d~i~~l~-~g~i 173 (173)
T cd03230 128 PESRREFWELLREL-KKEGKTILLSSHILEEAERLCDRVAILN-NGRI 173 (173)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHhCCEEEEEe-CCCC
Confidence 99999999999999 556899999 999999999999999999 8863
No 268
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=274.12 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=155.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------------eEEEEEeccCcCCCC-CHHH
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV----------------LLLCYVEKLDAHQTY-SVSE 506 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G----------------~~igyv~Q~~~~~~~-TV~E 506 (846)
++++..+.-.+|||-|+||||||||+|+|+|+. |++|.|.+|| |++|||+||..+||+ ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 677887775799999999999999999999997 6999999999 789999999999999 9999
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHH
Q 048695 507 SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLT 573 (846)
Q Consensus 507 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~ 573 (846)
||.|+...- ..+..+++.+.||++|+.++++..||| ++|++|+||||.|.||-..+.+
T Consensus 96 NL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 96 NLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred chhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 999986421 345688999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 574 ILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 574 i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
++-.|.+++.+.+..|+. ||.++|+.+++|++++|+ +||+..+|+.++
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le-~GkV~A~g~~e~ 215 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLE-NGKVKASGPLEE 215 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEec-CCeEEecCcHHH
Confidence 999999997777899999 999999999999999999 999999998743
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.8e-30 Score=303.94 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=163.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe---------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL--------- 488 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~--------- 488 (846)
+.+++++|++. . +|+|||+++++||++||+||||||||||||+|+|+.+ .+|+|.++|+
T Consensus 266 ~~~l~~~~l~~---------~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG---------E--GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC---------C--CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34799999984 1 5999999999999999999999999999999999975 9999999982
Q ss_pred ----EEEEEeccC---cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--------
Q 048695 489 ----LLCYVEKLD---AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------- 551 (846)
Q Consensus 489 ----~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------- 551 (846)
.++|++|+. .+++. |+.|++......+.+......+.+++++++++.+||+ +..++++++|||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 489999984 47777 9999996432111111111223345789999999997 789999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+.+.|+++ +++|.|||+ |||.+++.++|||+++|+ +|+++..|++++
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l-~~~g~tiIivsHd~~~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI-AAQNVAVLFISSDLEEIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 899999999999999999999999999999 667999999 999999999999999999 999999998876
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.2e-30 Score=268.12 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=146.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 6 ~l~~~~l~~-~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 6 EIEVENLSV-RYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred eEEEEEEEE-EeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 589999999 7752 12479999999999999999999999999999999999985 999999998
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
+.++||+|++.+++.||+||+.+.. ..+. +.+.+.++ .++.+.+||+ .+|
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 3599999998766559999997521 1121 22334443 3567788887 899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++|+|||||+|||+.++..+++.|+++ ++ |+|+|+ ||+.+++.. +|++++|+ +|+++..|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~th~~~~~~~-~d~v~~l~-~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREE-FT-NSTILTIAHRLRTIID-YDKILVMD-AGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHHHHhh-CCEEEEEE-CCEEEecCCC
Confidence 999999999999999999999999998 54 899999 999999866 99999999 9999988764
No 271
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=293.78 Aligned_cols=186 Identities=24% Similarity=0.326 Sum_probs=159.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+..++.+|+++ .|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+ ++|+|.+||
T Consensus 318 ~~ei~~~~l~~-~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 318 PIEISLENLSF-RYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred CceeeecceEE-ecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 45677789999 7763 4599999999999999999999999999999999999986 999999999
Q ss_pred --eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc------cccCC----ccC----
Q 048695 488 --LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN------QLVGS----LHY---- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~v~~----lSg---- 551 (846)
++++||+|++.+++.|+|||+.++.. . ..++.+.+++++.||.+..+ +.+|+ |||
T Consensus 393 ~~k~i~~v~Q~p~lf~gTireNi~l~~~-----~----~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 393 WRKQISWVSQNPYLFAGTIRENILLARP-----D----ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred HHhHeeeeCCCCccccccHHHHhhccCC-----c----CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHH
Confidence 67999999999998899999998531 1 12356778888888876544 44544 666
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+++++++||||++||.++.+.|++.|.++ ++ ++|+++ ||+...+ .-+|+|++|+ +|+++..|..+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l-~~-~ktvl~itHrl~~~-~~~D~I~vld-~G~l~~~g~~~ 539 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AK-QKTVLVITHRLEDA-ADADRIVVLD-NGRLVEQGTHE 539 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH-Hh-CCeEEEEEcChHHH-hcCCEEEEec-CCceeccCCHH
Confidence 889999999999999999999999999998 44 488888 9998776 4599999999 99999999884
Q ss_pred C
Q 048695 622 S 622 (846)
Q Consensus 622 ~ 622 (846)
+
T Consensus 540 ~ 540 (559)
T COG4988 540 E 540 (559)
T ss_pred H
Confidence 3
No 272
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=258.12 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=175.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
|+.++|+.+ .+.++...++++|+++|+++.+|+++.|+|.||||||||+|+|+|.++ ++|+|.++|
T Consensus 1 Mi~~~~~~~-~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATK-TFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred Cccccccee-eecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 356677777 565666678999999999999999999999999999999999999875 999999999
Q ss_pred eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCH---HHHHHHHHHHHHHc--CCCcccccccCCccC--------
Q 048695 488 LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNA---MRRHIHVELVLNQL--GLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 ~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~---~~~~~~v~~~l~~l--~L~~~~~~~v~~lSg-------- 551 (846)
..++-|+|++ ...+. |++||+..+...-..++.+. ..+++...+-++.+ ||++..++++|-|||
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3467789997 46788 99999998754311122222 33344455556665 668899999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC---
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--- 622 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--- 622 (846)
+.|+||||||-|++|||.++..|++.-.++.++.+.|.+| ||.++++..+.+|+++|+ +|+++.+-.-++
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh-~G~IvlDv~g~~k~~ 238 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH-SGKIVLDVTGEEKAS 238 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe-CCeEEEEcccccccC
Confidence 8999999999999999999999999999998888999999 999999999999999999 999997654433
Q ss_pred -ChHHHHHHHhhCC
Q 048695 623 -NHDIILDYFLLIP 635 (846)
Q Consensus 623 -~~~~l~~~f~~~~ 635 (846)
...++...|+.+.
T Consensus 239 L~v~dli~~F~~~r 252 (263)
T COG1101 239 LTVLDLIQMFEKIR 252 (263)
T ss_pred CcHHHHHHHHHHHh
Confidence 4467778888653
No 273
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.1e-30 Score=269.61 Aligned_cols=181 Identities=20% Similarity=0.239 Sum_probs=142.0
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQ 500 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~ 500 (846)
++++||++ .|+++....+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| .+||++|++.++
T Consensus 1 l~~~~l~~-~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASF-TWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEE-ecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhc
Confidence 46899999 775210001369999999999999999999999999999999999975 999999998 899999998877
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHH-----HHHHHHHc--CCCcccccccCCccC-------------CCCcEEEEe
Q 048695 501 TYSVSESIQFSAALRVGKTVNAMRRHIH-----VELVLNQL--GLLPYSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 501 ~~TV~E~l~f~a~lr~~~~~~~~~~~~~-----v~~~l~~l--~L~~~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
+.|++||+.+.... ..++..+. +.+.++.+ |++...++.+.++|+ .+|++++||
T Consensus 79 ~~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 79 NGTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred cCcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45999999875321 11111111 11222222 344455667788887 999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 561 EPLSGVDTIGTLTILN-ILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
|||+|||+.+++.+.+ +++++ .++|+|||+ ||+.+++.. +|++++|+ +|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~-~~~~~tvi~~sh~~~~~~~-~d~i~~l~-~G~ 204 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGL-LLNNKTRILVTHQLQLLPH-ADQIVVLD-NGR 204 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHh-ccCCCEEEEEeCCHHHHhh-CCEEEEEe-CCC
Confidence 9999999999999998 56776 556899999 999988887 99999999 874
No 274
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.2e-30 Score=260.89 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=170.8
Q ss_pred CCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhh
Q 048695 438 ESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 438 ~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr 515 (846)
....+|+||||++++||.++|+|+||||||||||+|+|.+ |++|+|.++|+......=.-.+.|. |.+||+.+-+.+.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 3567999999999999999999999999999999999998 5999999999655444444456677 9999999988776
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048695 516 VGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQ 582 (846)
Q Consensus 516 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~ 582 (846)
+.++++.+++++++++.-+|.++.|+++.+.|. .+|+||++||-.+-.|+.-++.-.+.++++
T Consensus 118 ---G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~- 193 (249)
T COG1134 118 ---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL- 193 (249)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH-
Confidence 788999999999999999999999999999975 899999999999999999999999999999
Q ss_pred hhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhC
Q 048695 583 IRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLI 634 (846)
Q Consensus 583 ~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~ 634 (846)
.++++|||+ +|+.+.+.++|||+++|+ +|++...|++ +++.++|...
T Consensus 194 ~~~~~tiv~VSHd~~~I~~~Cd~~i~l~-~G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 194 VEKNKTIVLVSHDLGAIKQYCDRAIWLE-HGQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred HHcCCEEEEEECCHHHHHHhcCeeEEEe-CCEEEEcCCH----HHHHHHHHHh
Confidence 677899999 999999999999999999 9999999999 7788887764
No 275
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-30 Score=302.50 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=161.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~~ 498 (846)
+|+++|+++ .|+ ++++|+|+|+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.+||++|++.
T Consensus 1 ml~i~~ls~-~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~ 74 (530)
T PRK15064 1 MLSTANITM-QFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF 74 (530)
T ss_pred CEEEEEEEE-EeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 478999999 776 5679999999999999999999999999999999999975 999999998 67999999988
Q ss_pred CCCC-CHHHHHHHHHh-hh-----------cCCC-----------------CCHHHHHHHHHHHHHHcCCCccc-ccccC
Q 048695 499 HQTY-SVSESIQFSAA-LR-----------VGKT-----------------VNAMRRHIHVELVLNQLGLLPYS-NQLVG 547 (846)
Q Consensus 499 ~~~~-TV~E~l~f~a~-lr-----------~~~~-----------------~~~~~~~~~v~~~l~~l~L~~~~-~~~v~ 547 (846)
+++. ||+|++.++.. .+ .+.. ....+.+++++++++.+||.+.. +++++
T Consensus 75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 154 (530)
T PRK15064 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS 154 (530)
T ss_pred cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh
Confidence 8888 99999987531 00 0000 00012345788999999998644 57899
Q ss_pred CccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 548 SLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 548 ~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
+||| .+|++|||||||+|||+.++..+.+.|++ .|.|||+ ||+.+++.++||++++|+ +|+
T Consensus 155 ~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~-~g~ 229 (530)
T PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLD-YGE 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEe-CCE
Confidence 9998 89999999999999999999999999863 4789999 999999999999999999 999
Q ss_pred E-EEecCCC
Q 048695 614 Q-AYFGPRG 621 (846)
Q Consensus 614 ~-v~~G~~~ 621 (846)
+ ++.|+++
T Consensus 230 i~~~~g~~~ 238 (530)
T PRK15064 230 LRVYPGNYD 238 (530)
T ss_pred EEEecCCHH
Confidence 9 4788775
No 276
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=2.2e-30 Score=277.06 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=154.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
-.++++|+++ .|++ .++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++|
T Consensus 18 ~~i~~~~l~~-~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCV-RYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEE-EeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 3699999999 7752 12579999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHH-----HHHHHHHHHHc--CCCcccccccCCccC--------
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRR-----HIHVELVLNQL--GLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~-----~~~v~~~l~~l--~L~~~~~~~v~~lSg-------- 551 (846)
+.++|++|++.+++.|++||+..... ...+.. ...+++.++.+ |++...++.+.+||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 35899999987765599999853210 111111 11234455555 666666677788887
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+.+.++++ + ++.|||+ ||+.+++.. |||+++|+ +|+++..|+++
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~-~-~~~tiii~sh~~~~~~~-~dri~~l~-~G~i~~~g~~~ 239 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTA-F-ADRTVVTIAHRVSTILD-ADLVLVLS-RGILVECDTPE 239 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-c-CCCEEEEEecChHHHHh-CCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999997 4 4889999 999999876 99999999 99999998863
No 277
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=3.5e-30 Score=261.23 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=134.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++|+++ .| +|+++|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~-~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 4 VLEVRGLSV-KG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred EEEEeccEE-Ee---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 699999998 32 8999999999999999999999999999999999985 999999998
Q ss_pred -eEEEEEeccC---cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC
Q 048695 488 -LLLCYVEKLD---AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP 562 (846)
Q Consensus 488 -~~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP 562 (846)
+.++|++|+. .+++. |++||+.+... .+..+++ ++.-....+ .+|++|+||||
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------LS~G~~q-rl~la~al~---------------~~p~llllDEP 131 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL------LSGGNQQ-KVVLARWLA---------------RDPRVLILDEP 131 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh------cCHHHHH-HHHHHHHHc---------------cCCCEEEECCC
Confidence 2599999984 57777 99999987643 2222222 111111100 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 563 LSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 563 TsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
|+|||+.++..+.+.|+++ +++|+|+|+ ||+.+++.++||++++|+ +|++
T Consensus 132 ~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~~d~v~~l~-~G~i 182 (182)
T cd03215 132 TRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMY-EGRI 182 (182)
T ss_pred CcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEec-CCcC
Confidence 9999999999999999999 666899999 999999999999999999 8864
No 278
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=6.6e-30 Score=271.20 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=153.6
Q ss_pred ceeeceeeEEe-----CCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHh
Q 048695 441 PLFSYVTCYAK-----PQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAA 513 (846)
Q Consensus 441 ~iL~~vs~~v~-----~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~ 513 (846)
..++|++++++ +||+++|+|||||||||||++|+|+.+ .+|+|.++|+.++|++|+....+. ||+|++.+...
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 35666666665 799999999999999999999999975 999999999999999999876667 99999976432
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048695 514 LRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSL 580 (846)
Q Consensus 514 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~ 580 (846)
.. . . .....+++++.+||.+..++.+++||+ .+|++++|||||++||+.++..+.+.|++
T Consensus 88 ~~---~-~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 88 DF---Y-T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred hc---c-c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 21 1 1 123467899999999999999999998 99999999999999999999999999999
Q ss_pred HHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE--EecCCCCChHHHHHHHhhCC
Q 048695 581 CQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA--YFGPRGSNHDIILDYFLLIP 635 (846)
Q Consensus 581 l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v--~~G~~~~~~~~l~~~f~~~~ 635 (846)
++++.|+|||+ ||+.+++..+||++++|+ ++..+ ..+++.+..+.+..|+...+
T Consensus 161 ~~~~~~~tiiivsHd~~~~~~~~d~i~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (246)
T cd03237 161 FAENNEKTAFVVEHDIIMIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLD 217 (246)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEc-CCCeeEEEeCCchHHHHHHHHHHHHCC
Confidence 95556899999 999999999999999998 54333 44555444455666776644
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=5.3e-30 Score=263.92 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=139.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcC-----------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNV----------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G----------- 487 (846)
++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.. |.+|+|.++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHV-SVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEE-EeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 46889999 775 467999999999999999999999999999999999983 5999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCC
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS 564 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs 564 (846)
+.++|++|++.+++. |+++++.- .+...+..+++ ++.-+...+ .+|++|+|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l~~-----~~~~LS~G~~q-rv~laral~---------------~~p~illlDEPt~ 133 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFLRY-----VNEGFSGGEKK-RNEILQLLL---------------LEPDLAILDEPDS 133 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHHhh-----ccccCCHHHHH-HHHHHHHHh---------------cCCCEEEEeCCCc
Confidence 139999999888888 99888721 11123333322 111100000 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHh-hcCEEEEEccCCEEEEecCC
Q 048695 565 GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVP-FFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~-~~D~vllL~~~G~~v~~G~~ 620 (846)
|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.+ .+|++++|+ +|+++..|+.
T Consensus 134 ~LD~~~~~~l~~~L~~~-~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~~~~ 189 (200)
T cd03217 134 GLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIKPDRVHVLY-DGRIVKSGDK 189 (200)
T ss_pred cCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhhCCEEEEEE-CCEEEEEccH
Confidence 99999999999999999 667899999 999998887 799999999 9999999843
No 280
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=9.7e-30 Score=304.93 Aligned_cols=195 Identities=15% Similarity=0.191 Sum_probs=172.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++|+++ .|+.+ .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.+||
T Consensus 3 ~~l~~~nl~~-~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRR-SYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEE-EeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 3799999999 77521 123579999999999999999999999999999999999985 999999999
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.++|++|+..+++. |+.||+.+..... +.+.++.++++.++++.+||++..|+.+++||+
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHH
Confidence 148999999999998 9999999865432 334556677899999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||+|||+.+++.+.++|+++ +++|+|+++ ||+.+.+ +.|||+++|+ +|++++.|++++
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l-~~~g~tilivsH~~~~~-~~~d~i~~l~-~G~i~~~g~~~~ 229 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVA-AQAERVIEIR-DGEIVRNPPAQE 229 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEECCCHHHH-HhCCEEEEEE-CCEEEeecCccc
Confidence 899999999999999999999999999999 667999999 9999877 4699999999 999999998864
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=4.2e-30 Score=259.72 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=134.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~~ 489 (846)
++++|+++ .|+. .++.+++|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +.
T Consensus 1 i~~~~~~~-~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSF-SYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEE-EeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 46889999 6752 12469999999999999999999999999999999999985 999999999 35
Q ss_pred EEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHH
Q 048695 490 LCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 490 igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~ 569 (846)
++|++|++.+++.|++||+ +...+..+++ ++.-+...+ .+|++|+|||||+|||+.
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------~~~LS~G~~q-rv~laral~---------------~~p~~lllDEP~~~LD~~ 132 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------GRRFSGGERQ-RLALARILL---------------QDAPIVLLDEPTVGLDPI 132 (178)
T ss_pred EEEEccCCeeecccHHHhh--------cccCCHHHHH-HHHHHHHHh---------------cCCCEEEEECCcccCCHH
Confidence 8999999877655999998 1233333332 111110000 789999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
++..+++.|+++ ++ |.|||+ ||+.+++. .+|++++|+ +|++++.|
T Consensus 133 ~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~-~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 133 TERQLLSLIFEV-LK-DKTLIWITHHLTGIE-HMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHH-cC-CCEEEEEecCHHHHH-hCCEEEEEE-CCEEEecC
Confidence 999999999998 54 889999 99999885 699999999 99998754
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=6.1e-30 Score=267.92 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=146.6
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------eEEEEEeccCcCC--CC-CHHHHHHHHHhhhc
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------LLLCYVEKLDAHQ--TY-SVSESIQFSAALRV 516 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------~~igyv~Q~~~~~--~~-TV~E~l~f~a~lr~ 516 (846)
+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.++|++|++.+. .. |++||+.++.....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 4689999999999999999999999999975 999999999 3599999997653 34 99999987532110
Q ss_pred C-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048695 517 G-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQ 582 (846)
Q Consensus 517 ~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~ 582 (846)
. ...+.++..++++++++.+||++..++.+++||+ .+|++|+|||||+|||+.++..+.+.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~- 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL- 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-
Confidence 0 0112223445789999999999999999999998 999999999999999999999999999999
Q ss_pred hhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 583 IRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 583 ~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+++|+|+|+ ||+.+++.+.||+++++ +|++++.|+.++
T Consensus 160 ~~~~~tvii~sH~~~~~~~~~d~i~~l--~G~i~~~~~~~~ 198 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQAMATCDRVVLL--NGRVIADGTPQQ 198 (223)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEE--CCEEEeecCHHH
Confidence 667999999 99999999999999998 499999998754
No 283
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=6.2e-30 Score=302.23 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=162.8
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEecc
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKL 496 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~ 496 (846)
+++|+++||++ .|++ ++.+|+|||+++++|++++|+|||||||||||++|+|++ |++|+|.+++ +.+|||+|+
T Consensus 4 ~~~l~i~~l~~-~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~ 78 (556)
T PRK11819 4 QYIYTMNRVSK-VVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQE 78 (556)
T ss_pred cEEEEEeeEEE-EeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecC
Confidence 45899999999 7751 367999999999999999999999999999999999997 4999999986 789999999
Q ss_pred CcCCCC-CHHHHHHHHHh-hh-----cC-----CCCCH----------------------HHHHHHHHHHHHHcCCCccc
Q 048695 497 DAHQTY-SVSESIQFSAA-LR-----VG-----KTVNA----------------------MRRHIHVELVLNQLGLLPYS 542 (846)
Q Consensus 497 ~~~~~~-TV~E~l~f~a~-lr-----~~-----~~~~~----------------------~~~~~~v~~~l~~l~L~~~~ 542 (846)
+.+++. ||+||+.++.. .+ .. ..... .+..++++++++.+||.. .
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~ 157 (556)
T PRK11819 79 PQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W 157 (556)
T ss_pred CCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c
Confidence 988888 99999987532 10 00 00000 012456889999999964 7
Q ss_pred ccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE
Q 048695 543 NQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL 608 (846)
Q Consensus 543 ~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL 608 (846)
++++++||| .+|++|||||||+|||+.++..+.+.|+++ . .|||+ ||+.+++.+.||++++|
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-~---~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-P---GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-C---CeEEEEeCCHHHHHhhcCeEEEE
Confidence 999999998 899999999999999999999999999987 3 48888 99999999999999999
Q ss_pred ccCCEEE-EecCCC
Q 048695 609 TKEGHQA-YFGPRG 621 (846)
Q Consensus 609 ~~~G~~v-~~G~~~ 621 (846)
+ +|+++ +.|+.+
T Consensus 234 ~-~g~i~~~~g~~~ 246 (556)
T PRK11819 234 D-RGRGIPWEGNYS 246 (556)
T ss_pred e-CCEEEEecCCHH
Confidence 9 99986 778765
No 284
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1e-29 Score=271.81 Aligned_cols=201 Identities=20% Similarity=0.232 Sum_probs=182.6
Q ss_pred CceEEEEeceeeeeeccC------CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC----
Q 048695 418 EPVTFVFEGLTFSRYEEG------SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV---- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~------~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G---- 487 (846)
.++.++.+||.+ .|.-+ ......++++||+++++||.++|+|.||||||||=.+|.++++.+|+|.++|
T Consensus 273 ~~~ll~~~~v~v-~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRV-WFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEE-EEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc
Confidence 567899999999 55421 1223578999999999999999999999999999999999999889999999
Q ss_pred -----------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-
Q 048695 488 -----------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY- 551 (846)
Q Consensus 488 -----------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg- 551 (846)
+++-.|+||+ .+.|. ||.|.+.-+...+.| ..+++|+.+++.++|+.+||+. ..++++.+.||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 6789999997 57888 999999999888765 4678999999999999999985 68999999998
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++++||||||+||-.-+.+|+++|++++++.|.+-++ +||+..+..+||++++|+ +||+|+.|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~-~GkiVE~G 509 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR-DGKIVEQG 509 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe-CCEEeeeC
Confidence 8999999999999999999999999999998899999999 999999999999999999 99999999
Q ss_pred CCC
Q 048695 619 PRG 621 (846)
Q Consensus 619 ~~~ 621 (846)
+.+
T Consensus 510 ~~~ 512 (534)
T COG4172 510 PTE 512 (534)
T ss_pred CHH
Confidence 973
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=3.9e-30 Score=258.78 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=130.6
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++ .++.+++++|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++| +
T Consensus 1 i~~~~l~~-~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSF-RYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEE-EcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 46889999 6752 13569999999999999999999999999999999999985 999999998 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCH
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDT 568 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~ 568 (846)
.++|++|++.+++.||+||+ + +..+++ ++.-+...+ .+|++|+|||||+|||+
T Consensus 77 ~i~~~~q~~~~~~~tv~~~l-----L------S~G~~q-rv~la~al~---------------~~p~~lllDEPt~~LD~ 129 (173)
T cd03246 77 HVGYLPQDDELFSGSIAENI-----L------SGGQRQ-RLGLARALY---------------GNPRILVLDEPNSHLDV 129 (173)
T ss_pred heEEECCCCccccCcHHHHC-----c------CHHHHH-HHHHHHHHh---------------cCCCEEEEECCccccCH
Confidence 68999999876656999998 1 122221 111110000 78999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
.++..+++.|+++ +++|+|||+ ||+.+++ +.||++++|+ +|++
T Consensus 130 ~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~-~~~d~v~~l~-~G~i 173 (173)
T cd03246 130 EGERALNQAIAAL-KAAGATRIVIAHRPETL-ASADRILVLE-DGRV 173 (173)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HhCCEEEEEE-CCCC
Confidence 9999999999999 667999999 9999887 5799999999 8864
No 286
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4e-30 Score=259.94 Aligned_cols=160 Identities=23% Similarity=0.285 Sum_probs=133.9
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------- 487 (846)
++++|+++ .|+ ++++++|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++|
T Consensus 1 i~~~~l~~-~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSK-RYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEE-EEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 46889999 775 4679999999999999999999999999999999999986 999999988
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCC
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSG 565 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsg 565 (846)
+.++|++|++.+++. |++||+.+. .+..+++ ++.-+...+ .+|++++|||||+|
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~--------lS~G~~q-r~~la~al~---------------~~p~llilDEP~~~ 130 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG--------LSGGQQQ-RVALARALA---------------MDPDVLLLDEPTSA 130 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec--------CCHHHHH-HHHHHHHHH---------------CCCCEEEEeCCccc
Confidence 248999999888888 999998753 1222222 111111110 78999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 566 VDTIGTLTILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
||+.++..+.+.|+++ +++ |+|+|+ ||+.+++.+.+|++++|+ +|+
T Consensus 131 LD~~~~~~l~~~l~~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~ 178 (178)
T cd03229 131 LDPITRREVRALLKSL-QAQLGITVVLVTHDLDEAARLADRVVVLR-DGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEe-CCC
Confidence 9999999999999999 555 899999 999999999999999999 774
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=3.3e-30 Score=307.26 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=152.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~ 488 (846)
.++++||++ .|.+ ++++|+|+|++++|||.+||+||||||||||+++|+|+.|.+|+|.+|| +
T Consensus 349 ~i~~~~vsf-~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEI-LSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEE-eccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHh
Confidence 599999997 4431 4679999999999999999999999999999999999999999999999 4
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg------ 551 (846)
.+|||+|++.+++.|++|||.++. | ..++ ++++++++..++.+. .|+.+| +|||
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi 494 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 799999999998889999999862 1 2233 345556666655432 345554 4777
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+||||||+||+.+.+.|.+.|+++ . +++|+|+ +|..+.+ +.+|+|++|+ +|+++..|+.+
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~-~~~TvIiItHrl~~i-~~aD~Iivl~-~G~i~e~G~~~ 568 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-S-RRQTTLMVTHQLEDL-AQWDQIWVMQ-DGQIVQQGDYA 568 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-h-CCCEEEEEecChHHH-HhCCEEEEEe-CCeEeecCCHH
Confidence 999999999999999999999999999998 4 5789888 8888665 5699999999 99999999863
No 288
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=2.9e-30 Score=306.64 Aligned_cols=185 Identities=23% Similarity=0.250 Sum_probs=153.4
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------- 487 (846)
.-.++++||++ +|+. .+..+|+|+|++++|||.+||+|+||||||||+|+|+|++ |.+|+|++||
T Consensus 469 ~g~I~~~nvsf-~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 469 QGEIEFENVSF-RYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred CceEEEEEEEE-EeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHH
Confidence 34699999999 8863 2347999999999999999999999999999999999998 5999999999
Q ss_pred --eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccC----CccC---
Q 048695 488 --LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-------YSNQLVG----SLHY--- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~v~----~lSg--- 551 (846)
+.+|||+||+.++..|++||+.++.. ..+. +.+.++++.-|..+ -.|+.+| +|||
T Consensus 545 lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-----~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 545 LRRQVGYVLQDPFLFSGSIRENIALGNP-----EATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHhheeEEcccchhhcCcHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 78999999999988899999998632 2222 23344444444433 2344444 4677
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+||+||||||+||+.+.+.|.+.|+++ ..|+|+|+ +|..+.+ +.||||++|+ +||++..|+.
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~--~~~~T~I~IaHRl~ti-~~adrIiVl~-~Gkiv~~gs~ 691 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHRLSTI-RSADRIIVLD-QGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH--hcCCeEEEEEccchHh-hhccEEEEcc-CCceeccCCH
Confidence 999999999999999999999999999998 45788888 7777554 6799999999 9999999997
No 289
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=263.69 Aligned_cols=198 Identities=20% Similarity=0.258 Sum_probs=167.8
Q ss_pred CCCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------
Q 048695 415 IPVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------ 487 (846)
Q Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------ 487 (846)
++.++..|+++|+++ +|+ +|.+|+|+|.+|+|||-.+|+|||||||||||++++|..| .+|.+.+.|
T Consensus 25 ~~~~~~li~l~~v~v-~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 25 IEINEPLIELKNVSV-RRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG 98 (257)
T ss_pred CCCCcceEEecceEE-EEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence 344567899999999 776 7999999999999999999999999999999999999986 899999988
Q ss_pred -------eEEEEEecc--CcCCCC-CHHHHHHHHHhhh--cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----
Q 048695 488 -------LLLCYVEKL--DAHQTY-SVSESIQFSAALR--VGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 -------~~igyv~Q~--~~~~~~-TV~E~l~f~a~lr--~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---- 551 (846)
+.||+|.-. ..+.+. +|+|.+.-+..-. .......++..+++..+++.+|+.+.+|++.++||.
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 579999743 334455 8999886433211 111123456677899999999999999999999997
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++||||||++|||...+..+.+.|.+++... +.++|+ ||..+|+-..++++++|+ +|++++.|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~-~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK-EGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEee-CCceeeccc
Confidence 9999999999999999999999999999994332 677888 999999999999999999 999999874
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=2.6e-30 Score=261.71 Aligned_cols=164 Identities=23% Similarity=0.322 Sum_probs=136.7
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCC
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQT 501 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~ 501 (846)
+++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+.+. +.+ +
T Consensus 1 ~~~~l~~-~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~~~---~ 68 (180)
T cd03214 1 EVENLSV-GYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---SLS---P 68 (180)
T ss_pred CeeEEEE-EEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---cCC---H
Confidence 3678998 775 4679999999999999999999999999999999999985 9999999985431 100 0
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCH
Q 048695 502 YSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDT 568 (846)
Q Consensus 502 ~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~ 568 (846)
...+..+. .+.++++.+||.+..++.+.+||+ .+|++++|||||+|||+
T Consensus 69 ~~~~~~i~------------------~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 69 KELARKIA------------------YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred HHHHHHHh------------------HHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 01111111 222288999999888999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 569 IGTLTILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.++..+.+.|+++ +++ |.|+|+ ||+.+++.+++|++++|+ +|++++.|
T Consensus 131 ~~~~~~~~~l~~~-~~~~~~tiii~sh~~~~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 131 AHQIELLELLRRL-ARERGKTVVMVLHDLNLAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999 555 889999 999999999999999999 99997654
No 291
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=7.1e-30 Score=281.79 Aligned_cols=161 Identities=25% Similarity=0.212 Sum_probs=145.9
Q ss_pred EEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHH
Q 048695 458 LLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRR 525 (846)
Q Consensus 458 l~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~ 525 (846)
|+|||||||||||++|+|+.+ ++|+|.++| +.+||++|+..+++. ||+||+.|+...+ +.++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHH
Confidence 689999999999999999985 999999999 469999999999999 9999999986543 3345555
Q ss_pred HHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-
Q 048695 526 HIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS- 591 (846)
Q Consensus 526 ~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~- 591 (846)
+++++++++.+||++..++.+.+||| .+|++|+|||||+|||+.++..+.+.|++++++.|+|+|+
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 67899999999999999999999998 8999999999999999999999999999995556999999
Q ss_pred ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 592 NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 592 ~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
||+.+++.++|||+++|+ +|+++..|++++
T Consensus 158 THd~~e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred eCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999999 999999998753
No 292
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=8.1e-30 Score=261.47 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=145.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------eEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------LLLC 491 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------~~ig 491 (846)
+++++|+++ .|+ ++.+++ +|+++++||+++|+|+||||||||+++|+|+.+ .+|+|.++| +.++
T Consensus 1 ~l~~~~l~~-~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQF-NIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT 73 (195)
T ss_pred CeEEEEeeE-EEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEE
Confidence 378999999 775 345665 999999999999999999999999999999975 999999999 2489
Q ss_pred EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEE
Q 048695 492 YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSIL 557 (846)
Q Consensus 492 yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iL 557 (846)
|++|+..+++. ||+||+.+....+ . ..++++++++.+++.+..++.++++|+ .+|++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998877777 9999998865432 1 134678899999999989999999998 899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEE
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLAL 606 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vl 606 (846)
+|||||+|||+.++..+.+.|++. ++.|+|+|+ ||+.+++.. +|-+.
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i~~-~~~~~ 193 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMK-ANSGGIVLLSSHLESSIKS-AQILQ 193 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCccccch-hheec
Confidence 999999999999999999999887 677899999 999887755 66553
No 293
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=3e-29 Score=270.93 Aligned_cols=182 Identities=15% Similarity=0.230 Sum_probs=146.6
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEecc
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKL 496 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~ 496 (846)
.+..|+++|+++ . ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ .+|+|.++| .++|++|+
T Consensus 36 ~~~~l~i~nls~-~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-~i~yv~q~ 106 (282)
T cd03291 36 DDNNLFFSNLCL-V-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-RISFSSQF 106 (282)
T ss_pred CCCeEEEEEEEE-e-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEEEEeCc
Confidence 345799999998 3 3579999999999999999999999999999999999985 999999998 59999999
Q ss_pred CcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-----------ccccccCCccC-------------C
Q 048695 497 DAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-----------YSNQLVGSLHY-------------H 552 (846)
Q Consensus 497 ~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~v~~lSg-------------~ 552 (846)
+.+++.||+||+.+.... .. .++.+.++.+++.+ ..++.+.+||+ .
T Consensus 107 ~~l~~~tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred ccccccCHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 876655999999874321 11 11223344444432 22334568887 8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNIL-SLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l-~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++|+|||||+|||+.++..+++.+ +++ + .+.|||+ ||+.+++ ..||++++|+ +|+++..|++.+
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~-~~~tIiiisH~~~~~-~~~d~i~~l~-~G~i~~~g~~~~ 244 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKL-M-ANKTRILVTSKMEHL-KKADKILILH-EGSSYFYGTFSE 244 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHh-h-CCCEEEEEeCChHHH-HhCCEEEEEE-CCEEEEECCHHH
Confidence 99999999999999999999999865 565 4 4789999 9999887 5799999999 999999998743
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=8.3e-30 Score=303.52 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=155.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+.+ .+|+|.+||
T Consensus 341 ~i~~~~vsf-~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTF-TYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEE-ecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 599999999 7752 24679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg----- 551 (846)
+.++||+|++.+++.|++|||.++. +...+ +++++++++..|+.+. .|+.+|+ |||
T Consensus 417 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR 488 (582)
T PRK11176 417 NQVALVSQNVHLFNDTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488 (582)
T ss_pred hhceEEccCceeecchHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH
Confidence 5799999999998889999998752 11122 3456677777776543 3455543 777
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||||+||+.+...+++.|+++ . +++|+|+ ||+.+.+ +.||+|++|+ +|+++..|+.+
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~-~-~~~tvI~VtHr~~~~-~~~D~Ii~l~-~g~i~e~g~~~ 563 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDEL-Q-KNRTSLVIAHRLSTI-EKADEILVVE-DGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-h-CCCEEEEEecchHHH-HhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999997 3 4689888 9998654 6699999999 99999999863
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1e-29 Score=296.47 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=158.3
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC---------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV--------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G--------- 487 (846)
..+++++|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.| .+|+|.++|
T Consensus 258 ~~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVV-SYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEE-EEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 34799999999 775 4679999999999999999999999999999999999876 599999988
Q ss_pred ----eEEEEEeccCcCC-C-C-CHHHHHHHHHhh--hcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC------
Q 048695 488 ----LLLCYVEKLDAHQ-T-Y-SVSESIQFSAAL--RVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY------ 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~-~-~-TV~E~l~f~a~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg------ 551 (846)
+.+||++|++.++ . . |+++++.+.... ....... ++.+++++++++.+||.+ ..++++++||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 2489999987543 2 3 677776543211 1001112 233457899999999997 89999999998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC-cEEEE-ecChhhHHh-hcCEEEEEccCCEEEEecC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSG-HYCLS-NTPYARTVP-FFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g-~tvi~-~h~~~~i~~-~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+|||||+|||+.++..+++.|+++ +++| .|||+ ||+.+++.+ ++|++++|+ +|+++..-.
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l-~~~~~~tviivsHd~~~~~~~~~d~v~~l~-~G~i~~~~~ 486 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL-ISEGETQLLFVSHHAEDAPACITHRLEFVP-DGDIYRYVQ 486 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-HhcCCcEEEEEecchhhhhhhhheeEEEec-CCceEEeec
Confidence 999999999999999999999999999999 5555 56888 999999987 599999999 999876543
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=297.80 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=159.1
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++||++ .|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+. |.+|+|.++| +.+||++|+.
T Consensus 318 ~~l~~~~l~~-~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~ 391 (530)
T PRK15064 318 NALEVENLTK-GFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDH 391 (530)
T ss_pred ceEEEEeeEE-eeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccc
Confidence 4799999999 775 467999999999999999999999999999999999997 4999999999 7899999986
Q ss_pred c--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEEEe
Q 048695 498 A--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 498 ~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
. +.+. ||+|++.+.. . . .+.+++++++|+.+|+. +..++++++||| .+|++||||
T Consensus 392 ~~~~~~~~t~~~~~~~~~--~---~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWR--Q---E---GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred cccCCCCCcHHHHHHHhc--c---C---CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3 4566 9999986421 1 0 11235688999999994 688999999998 899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
|||+|||+.++..+.+.|+++ +.|||+ |||.+++.++||++++|+ +|+++ +.|++
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~-~g~i~~~~g~~ 520 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEIT-PDGVVDFSGTY 520 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEEcCCCH
Confidence 999999999999999999886 348888 999999999999999999 99998 77765
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=294.07 Aligned_cols=193 Identities=16% Similarity=0.187 Sum_probs=161.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL---------- 488 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~---------- 488 (846)
.+++++|+++ .+ +.+|+|||+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+
T Consensus 249 ~~i~~~~l~~-~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTS-LR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccc-cc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 4799999998 32 359999999999999999999999999999999999985 9999999981
Q ss_pred ---EEEEEeccC---cCCCC-CHHHHHHHHHh-hhcC-CC-CCHHHHHHHHHHHHHHcCCC-cccccccCCccC------
Q 048695 489 ---LLCYVEKLD---AHQTY-SVSESIQFSAA-LRVG-KT-VNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY------ 551 (846)
Q Consensus 489 ---~igyv~Q~~---~~~~~-TV~E~l~f~a~-lr~~-~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg------ 551 (846)
.+||++|+. .+++. |+.+|..+... .... .+ .+.++.+++++++++.+++. +..++.+++|||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH
Confidence 289999985 35677 88877433210 0000 01 12334456788999999995 578999999999
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||||||||+|||+.++..+++.|+++ ++.|.|||+ |||.+++.++|||+++|+ +|+++..++.++
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l-~~~~~tvi~vsHd~~~~~~~~d~v~~l~-~g~i~~~~~~~~ 477 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL-AKKDKGIIIISSEMPELLGITDRILVMS-NGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH-HHCCCEEEEECCChHHHHhhCCEEEEEE-CCEEEEEEcccc
Confidence 899999999999999999999999999999 677999999 999999999999999999 999998887754
No 298
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=1.4e-29 Score=306.90 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=153.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+. |.+|+|++||
T Consensus 451 ~I~~~nvsf-~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVTF-RYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred eEEEEEEEE-EcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 599999999 7852 2467999999999999999999999999999999999998 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.|++||+.++.. .+ ++++.++++..|+.+.. |+.+| +|||
T Consensus 527 ~~i~~v~Q~~~lf~gTI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 527 RQLGVVLQNGRLMSGSIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred hccEEEccCCccCcccHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 57999999999988899999997521 12 24567788888876543 34443 3676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.+.+++++.|+++ ++|+|+ +|..+.+ +.+|+|++|+ +|+++..|+.
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i-~~~D~Iivl~-~G~iv~~G~~ 668 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTI-RNADRIYVLD-AGRVVQQGTY 668 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHH-HcCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999886 478888 9988766 5599999999 9999999986
No 299
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=1.2e-29 Score=299.43 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=155.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ +++.+|+|+|+++++||.++|+||||||||||+++|+|+.+ .+|+|.+||
T Consensus 316 ~i~~~~v~~-~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 316 HLSVENVTI-VPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred eEEEEEEEE-EcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 599999999 7752 24679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCccC---------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH-----IHVELVLNQL--GLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~v~~lSg--------- 551 (846)
+.++||+|++.+++.|++||+.+... ..++++.. ...++.++.+ |++...+....+|||
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 46999999998887799999985321 12233221 1234455555 455555555667887
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||||||+.++..+.+.|+++ .+.|+|+|+ +|+.+.+ +.||++++|+ +|++++.|+.
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~~~~~tvi~ith~~~~~-~~~d~i~~l~-~G~i~~~g~~ 537 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPSLL-GCVDKILVLQ-DGRIARFGER 537 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHH-HhCCEEEEEE-CCEEEeeCCH
Confidence 899999999999999999999999999998 666899999 8988754 6799999999 9999999986
No 300
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=1.3e-29 Score=300.64 Aligned_cols=183 Identities=22% Similarity=0.299 Sum_probs=156.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++.+|+|+|+++++||.+||+||||||||||+|+|+|+.+ .+|+|++||
T Consensus 338 ~i~~~~v~f-~y~~---~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 338 SLTLNNVSF-TYPD---QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred eEEEEEEEE-ECCC---CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 599999999 7852 13579999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc------cccC----CccC------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN------QLVG----SLHY------ 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~v~----~lSg------ 551 (846)
+.++||+|++.+++.|++||+.++.. .. .+++++++++.+++.+..+ +.+| +|||
T Consensus 414 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 414 QAISVVSQRVHLFSATLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred hheeEEcccchhhcccHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHH
Confidence 46999999998887799999987531 11 2346788899999987544 3333 3676
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.++..+.+.|+++ . +|+|+|+ +|+.+.+. .+|++++|+ +|+++..|+.
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~~~~-~~d~i~~l~-~G~i~~~g~~ 557 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLTGLE-QFDRICVMD-NGQIIEQGTH 557 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChhHHH-hCCEEEEEe-CCeEEEeCCH
Confidence 999999999999999999999999999998 4 4789888 88887764 599999999 9999999986
No 301
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=248.56 Aligned_cols=202 Identities=15% Similarity=0.113 Sum_probs=173.7
Q ss_pred eEEEEeceeeeeeccCCCCC-cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC--------
Q 048695 420 VTFVFEGLTFSRYEEGSNES-TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV-------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G-------- 487 (846)
.+|+++||++ ... + +.||++||++|++||+.|||||||||||||.++|+|.-. ++|+|.++|
T Consensus 2 ~~L~I~dLhv-~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHV-EVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEE-Eec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCH
Confidence 4799999999 443 4 599999999999999999999999999999999999963 999999999
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCC-ccC--------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGS-LHY-------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~-lSg-------- 551 (846)
..+...+|.|.-+|. |+.+.|..+...+........+..+++++.++.+++++ ++++.++. +||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 468888999999999 99999998877653221113456678999999999987 78888864 677
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhc--CEEEEEccCCEEEEecCCCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFF--DLALILTKEGHQAYFGPRGSN 623 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~--D~vllL~~~G~~v~~G~~~~~ 623 (846)
.+|++.+||||-||||..+-+.|.+.++++ ++.|.++++ ||.-. +..+. |++.+|. +||++..|.+
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l-r~~~~~~liITHy~r-ll~~i~pD~vhvl~-~GrIv~sG~~--- 229 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL-REEGRGVLIITHYQR-LLDYIKPDKVHVLY-DGRIVKSGDP--- 229 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH-hcCCCeEEEEecHHH-HHhhcCCCEEEEEE-CCEEEecCCH---
Confidence 999999999999999999999999999999 888999988 88864 44544 9999999 9999999986
Q ss_pred hHHHHHHHhhCC
Q 048695 624 HDIILDYFLLIP 635 (846)
Q Consensus 624 ~~~l~~~f~~~~ 635 (846)
++.+.++..+
T Consensus 230 --el~~~le~~g 239 (251)
T COG0396 230 --ELAEELEEKG 239 (251)
T ss_pred --HHHHHHHHhc
Confidence 6777777755
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=4.1e-29 Score=295.14 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=160.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++||++ .|++ ++.+|+|+|+++++|++++|+|||||||||||++|+|+. |++|+|.+++ ..+|||+|++
T Consensus 3 ~~i~~~nls~-~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~ 77 (552)
T TIGR03719 3 YIYTMNRVSK-VVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77 (552)
T ss_pred EEEEEeeEEE-ecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccC
Confidence 3799999999 7741 357999999999999999999999999999999999997 5999999987 7899999999
Q ss_pred cCCCC-CHHHHHHHHHhh-hc----------CCCCCHHH----------------------HHHHHHHHHHHcCCCcccc
Q 048695 498 AHQTY-SVSESIQFSAAL-RV----------GKTVNAMR----------------------RHIHVELVLNQLGLLPYSN 543 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~l-r~----------~~~~~~~~----------------------~~~~v~~~l~~l~L~~~~~ 543 (846)
.+++. ||+||+.++... +. ....+.++ ...+++++++.+|+.. .+
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 156 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD 156 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence 88888 999999875321 00 00001010 1245778888899964 68
Q ss_pred cccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 544 QLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 544 ~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+++++||| .+|++|||||||++||+.++..+.+.|+++ . .|||+ ||+.+.+...||++++|+
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-~---~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-P---GTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-C---CeEEEEeCCHHHHHhhcCeEEEEE
Confidence 89999998 899999999999999999999999999886 2 48888 999999999999999999
Q ss_pred cCCEEE-EecCCCC
Q 048695 610 KEGHQA-YFGPRGS 622 (846)
Q Consensus 610 ~~G~~v-~~G~~~~ 622 (846)
+|+++ +.|+.++
T Consensus 233 -~g~i~~~~g~~~~ 245 (552)
T TIGR03719 233 -RGRGIPWEGNYSS 245 (552)
T ss_pred -CCEEEEecCCHHH
Confidence 99976 7787653
No 303
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=2.3e-29 Score=300.14 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=155.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+. |.+|+|++||
T Consensus 340 ~i~~~~v~f-~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 340 RIDIDNVSF-AYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred eEEEEEEEE-EeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHH
Confidence 589999999 7852 357999999999999999999999999999999999998 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.++||+|++.+++.|++|||.++. ..+ +++++++++.+|+.+.. |+.++ ++||
T Consensus 415 ~~i~~v~Q~~~lF~~Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR 484 (592)
T PRK10790 415 QGVAMVQQDPVVLADTFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL 484 (592)
T ss_pred hheEEEccCCccccchHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 5799999999999889999999852 112 24577788888876543 33343 3666
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||+||||||+||+.+.+.|.+.|+++ .+ ++|+|+ +|+.+.+ ..||+|++|+ +|+++..|+.++
T Consensus 485 ialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~-~~-~~tvIivtHr~~~l-~~~D~ii~l~-~G~i~~~G~~~~ 560 (592)
T PRK10790 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV-RE-HTTLVVIAHRLSTI-VEADTILVLH-RGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecchHHH-HhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999999999999999998 44 688888 8888665 5699999999 999999999743
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=7.3e-29 Score=292.83 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=168.5
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccC
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLD 497 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~ 497 (846)
+.+++++|+++ .|+ + ..|+++|+++++||+++|+||||||||||+++|+|+.+ ++|+|.++ ..+||++|+.
T Consensus 338 ~~~l~~~~ls~-~~~-----~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~ 409 (590)
T PRK13409 338 ETLVEYPDLTK-KLG-----D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYI 409 (590)
T ss_pred ceEEEEcceEE-EEC-----C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccc
Confidence 35799999999 775 2 35999999999999999999999999999999999985 99999987 6899999998
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
.+.+. ||+|++.+..... .. ...++++|+.+||.+..++.+++||| .+|++|||||||
T Consensus 410 ~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 410 KPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred cCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 77778 9999998753211 11 12578899999999999999999998 899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCC---hHHHHHHHhhC
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSN---HDIILDYFLLI 634 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~---~~~l~~~f~~~ 634 (846)
+|||+.++..+.++|++++++.|.|||+ |||.+++..++||+++|+ + ++...|...+. .+.+..++...
T Consensus 482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc
Confidence 9999999999999999995556899999 999999999999999998 4 78777775442 23445566655
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=264.01 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=179.1
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccceEEEcC------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGSLNGNV------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~I~~~G------ 487 (846)
..|+++||++ .+. ...+...++++|||++++||.+||+|.||||||-..+.+.|++| .+|+|.++|
T Consensus 5 ~lL~v~nLsV-~f~-~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSV-AFH-QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEE-EEe-cCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 4799999999 664 23356789999999999999999999999999999999999986 689999999
Q ss_pred ----------eEEEEEeccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCccC
Q 048695 488 ----------LLLCYVEKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP---YSNQLVGSLHY 551 (846)
Q Consensus 488 ----------~~igyv~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~v~~lSg 551 (846)
.+|++++|++ .+.|. |+.+.+.-..+++ .++++++.++++.++|+.+|+.+ ..+.++++|||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 4899999997 57788 9999888877766 36778888999999999999975 46788999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
++|++|+.||||++||..-+.+|+++|++|+++.|.++++ |||+..+.+++|||.+|. +|+++..
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~-~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ-HGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe-ccEEeec
Confidence 9999999999999999999999999999998899999999 999999999999999999 9999999
Q ss_pred cCCCC
Q 048695 618 GPRGS 622 (846)
Q Consensus 618 G~~~~ 622 (846)
|+.+.
T Consensus 240 ~~t~~ 244 (534)
T COG4172 240 GTTET 244 (534)
T ss_pred CcHHH
Confidence 98754
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=4e-29 Score=249.70 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=128.7
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccCcC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLDAH 499 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~~~ 499 (846)
++++|+++ .|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.++|++|++.+
T Consensus 1 i~~~~~~~-~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSL-ATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEE-EcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 46889999 6741 3579999999999999999999999999999999999975 999999999 889999999866
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILS 579 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~ 579 (846)
++.||+||+.+. .+...+..+++ ++.-+...+ .+|++|+|||||+|||+.++..+.+.|+
T Consensus 76 ~~~tv~~nl~~~----~~~~LS~G~~~-rv~laral~---------------~~p~~lllDEPt~~LD~~~~~~l~~~l~ 135 (166)
T cd03223 76 PLGTLREQLIYP----WDDVLSGGEQQ-RLAFARLLL---------------HKPKFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred ccccHHHHhhcc----CCCCCCHHHHH-HHHHHHHHH---------------cCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 533999999863 11233333322 111100000 7899999999999999999999999998
Q ss_pred HHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 580 LCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 580 ~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
++ ++|+|+ ||+.+. ...+|++++|+++|
T Consensus 136 ~~----~~tiiivsh~~~~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 136 EL----GITVISVGHRPSL-WKFHDRVLDLDGEG 164 (166)
T ss_pred Hh----CCEEEEEeCChhH-HhhCCEEEEEcCCC
Confidence 86 478988 999875 47999999999554
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.5e-29 Score=252.40 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=128.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++|+++ .|++. ++.+++|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +
T Consensus 1 l~~~~l~~-~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSF-SYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEE-EcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 46889999 67521 1379999999999999999999999999999999999985 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCH
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDT 568 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~ 568 (846)
.++|++|++.+++.|+.||+ + +..+++ ++.-+... + .+|++|+|||||+|||+
T Consensus 77 ~i~~~~~~~~~~~~t~~e~l-L----------S~G~~~-rl~la~al----------~-----~~p~llllDEP~~gLD~ 129 (171)
T cd03228 77 NIAYVPQDPFLFSGTIRENI-L----------SGGQRQ-RIAIARAL----------L-----RDPPILILDEATSALDP 129 (171)
T ss_pred hEEEEcCCchhccchHHHHh-h----------CHHHHH-HHHHHHHH----------h-----cCCCEEEEECCCcCCCH
Confidence 58999999876655999998 1 122221 12111000 0 68999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
.++..+.+.|+++ ++ ++|||+ ||+.+++.. ||++++|+ +|+
T Consensus 130 ~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~-~d~~~~l~-~g~ 171 (171)
T cd03228 130 ETEALILEALRAL-AK-GKTVIVIAHRLSTIRD-ADRIIVLD-DGR 171 (171)
T ss_pred HHHHHHHHHHHHh-cC-CCEEEEEecCHHHHHh-CCEEEEEc-CCC
Confidence 9999999999998 54 689999 999999977 99999999 774
No 308
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=1.5e-29 Score=307.80 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=152.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ +|++ .++.+|+|+|+++++||.+||+||||||||||+|+|+|++ |.+|+|.+||
T Consensus 477 ~I~~~~vsf-~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 477 YVELRNITF-GYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred eEEEEEEEE-ecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 599999999 7862 2467999999999999999999999999999999999998 4999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.|++|||.++. + ..+ ++++.++++..|+.+.. |+.++ +|||
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 5799999999998779999998742 1 122 23466677777765433 34443 3776
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.+..++++.|++ .++|+|+ +|..+.+ +.+|||++|+ +|+++..|+.
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i-~~~D~Iivl~-~G~i~~~G~~ 695 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTI-RDCDEIIVLE-RGKVVQRGTH 695 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHH-HhCCEEEEEe-CCEEEEecCH
Confidence 99999999999999999999999999875 3789999 9998776 4599999999 9999999987
No 309
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=5.8e-29 Score=258.60 Aligned_cols=179 Identities=11% Similarity=-0.023 Sum_probs=147.0
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEE-EcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcC
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLN-GNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVG 517 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~-~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~ 517 (846)
.+|+|||+++++||+++|+||||||||||+|+|+|+.+ .+|+|. ++|..+ .+.|+..+++. |++||+.+.+..+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~~~~-- 77 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMASLY-- 77 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHHHHc--
Confidence 37999999999999999999999999999999999975 999997 887433 23455667888 9999999876644
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhh
Q 048695 518 KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIR 584 (846)
Q Consensus 518 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 584 (846)
+.+.++. .+.+.+.++|++..++.++++|+ .+|++++|||||++||+.++..+.+.+.+. .+
T Consensus 78 -~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~-~~ 152 (213)
T PRK15177 78 -GLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ-LQ 152 (213)
T ss_pred -CCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH-hh
Confidence 2333322 23445677888889999999998 899999999999999999999999988654 22
Q ss_pred cCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhh
Q 048695 585 SGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 585 ~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
++++|+ ||+.+++.++||++++|+ +|++++.|+. +...++++.
T Consensus 153 -~~~ii~vsH~~~~~~~~~d~i~~l~-~G~i~~~~~~----~~~~~~~~~ 196 (213)
T PRK15177 153 -QKGLIVLTHNPRLIKEHCHAFGVLL-HGKITMCEDL----AQATALFEQ 196 (213)
T ss_pred -CCcEEEEECCHHHHHHhcCeeEEEE-CCeEEEeCCH----HHHHHHHHH
Confidence 357888 999999999999999999 9999999988 455555443
No 310
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.4e-30 Score=282.25 Aligned_cols=184 Identities=22% Similarity=0.275 Sum_probs=158.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ +|.+ ++.++|+|+|+++++||-+||+|+||||||||++.|+|-. |.+|+|.+||
T Consensus 336 ~l~~~~vsF-~y~~---~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSF-TYPG---QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeecccee-ecCC---CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 799999999 7763 2457999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-------VG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------v~----~lSg----- 551 (846)
+.++++.|...+|..|+|+||.++.. ..+ ++.+.++++++||++..... +| .+||
T Consensus 412 e~i~vl~Qr~hlF~~Tlr~NL~lA~~-----~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR 482 (573)
T COG4987 412 ETISVLTQRVHLFSGTLRDNLRLANP-----DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482 (573)
T ss_pred HHHhhhccchHHHHHHHHHHHhhcCC-----CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH
Confidence 37899999988887799999997531 122 34677899999998765444 33 3576
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
++.++++|||||.|||+.+.+++++.|.+- -+|+|+|+ ||+...+ +.||||++|+ +||++..|..+
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~--~~~kTll~vTHrL~~l-e~~drIivl~-~Gkiie~G~~~ 557 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH--AEGKTLLMVTHRLRGL-ERMDRIIVLD-NGKIIEEGTHA 557 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH--hcCCeEEEEecccccH-hhcCEEEEEE-CCeeeecCCHH
Confidence 999999999999999999999999999985 45899999 9998776 5699999999 99999999874
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=5.4e-29 Score=294.20 Aligned_cols=186 Identities=17% Similarity=0.179 Sum_probs=158.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++||++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ ++|+|.+++ ..+||++|+.
T Consensus 323 ~~l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 323 KVIEAENLSK-SFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred eEEEEEeEEE-EEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCch
Confidence 4799999999 775 4679999999999999999999999999999999999975 999999966 4799999986
Q ss_pred -cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEEeC
Q 048695 498 -AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLLEE 561 (846)
Q Consensus 498 -~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlLDE 561 (846)
.+++. ||+|++.+....+ ..... ...++++++.+||.+ ..++.+++||| .+|++|+|||
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 471 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred hhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 67788 9999999865332 11111 123567899999974 67999999998 9999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 562 PLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 562 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
||+|||+.++..+.+.|+++ . | |||+ |||.+++.++||++++|+.+|++. +.|+.
T Consensus 472 Pt~~LD~~~~~~l~~~l~~~-~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 472 PTNDLDVETLRALEEALLEF-P--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred CCCCCCHHHHHHHHHHHHhC-C--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCH
Confidence 99999999999999999987 3 4 7888 999999999999999998337876 56654
No 312
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-29 Score=279.05 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=157.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~ 488 (846)
.++++||++ .|++ ++++|++|||++++||-+||+|+|||||||+||+|.+....+|+|++|| +
T Consensus 351 ~I~F~dV~f-~y~~----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVHF-SYGP----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred cEEEEeeEE-EeCC----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhh
Confidence 499999999 7873 4569999999999999999999999999999999999988999999999 5
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cCC----ccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-------VGS----LHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------v~~----lSg------ 551 (846)
.|||||||..++..||.+|+.++.. ..+. ++|-++.++.|+.+.-.+. +|+ |||
T Consensus 426 ~Ig~VPQd~~LFndTIl~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 426 SIGVVPQDSVLFNDTILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred heeEeCCcccccchhHHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 7999999999888899999999742 2232 4566777777776544333 443 566
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+|+++|||||.||..+..++++.+++. ..|+|+|+ -|+++.+ +-||+|++|+ +|++...|+-+
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll-~~~DkI~~l~-nG~v~e~gth~ 570 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLL-KDFDKIIVLD-NGTVKEYGTHS 570 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhH-hcCCEEEEEE-CCeeEEeccHH
Confidence 999999999999999999999999999994 57899999 8888765 5699999999 99999999873
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=5.2e-29 Score=259.92 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=140.5
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------------- 487 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------------- 487 (846)
.+.|+.+ .|++ ++.+++|+|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|
T Consensus 2 ~~~~~~~-~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYF-SWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEE-ecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 4567788 6652 3679999999999999999999999999999999999985 999999988
Q ss_pred --eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-----------ccccccCCccC---
Q 048695 488 --LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-----------YSNQLVGSLHY--- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~v~~lSg--- 551 (846)
+.++|++|++.+++.|++||+.+... ... ++.+++++.++|.+ ..++.++++|+
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 146 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQR 146 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHH
Confidence 24899999987773499999987431 111 12344555556543 23567888987
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILN--ILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~--~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
.+|++|||||||+|||+.++..+++ +++.+ ++.|.|+|+ ||+.+++. .+|++++|+ +|+
T Consensus 147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~-~G~ 218 (218)
T cd03290 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMK-DGS 218 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEec-CCC
Confidence 9999999999999999999999998 67777 667899999 99998874 699999999 773
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=7.6e-29 Score=292.87 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=157.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++|+++ .|+ ++.+|+|||+++++||+++|+|||||||||||++|+|+.+ .+|+|.+++ ..+||++|+.
T Consensus 321 ~~l~~~~l~~-~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 321 KVIEAENLSK-GFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred eEEEEeeEEE-EEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 4799999999 775 4679999999999999999999999999999999999975 999999966 4799999986
Q ss_pred -cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEEeC
Q 048695 498 -AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLLEE 561 (846)
Q Consensus 498 -~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlLDE 561 (846)
.+++. ||+|++.++...+ ..... ..+++++++.+||.+ ..++++++||| .+|++|||||
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred cccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 47777 9999999865322 11111 224567899999974 67999999998 9999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 562 PLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 562 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
||+|||+.++..+++.|+++ . | |||+ |||.+++.++||++++|+.+|++. +.|+.
T Consensus 470 Pt~~LD~~~~~~l~~~l~~~-~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 470 PTNDLDVETLRALEEALLEF-A--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCCCCCHHHHHHHHHHHHHC-C--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 99999999999999999997 3 4 7888 999999999999999998236876 45554
No 315
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=4.1e-29 Score=297.70 Aligned_cols=183 Identities=19% Similarity=0.228 Sum_probs=152.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|+. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+ .+|+|.+||
T Consensus 334 ~I~~~~vsf-~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVSF-SYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEEE-EeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 599999999 7852 3569999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg----- 551 (846)
+.++||+|++.+++.|++||+.++. + ..++ +++.++++.+++.+. .|+.++ +|||
T Consensus 409 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 409 RNIAVVFQDAGLFNRSIEDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hheEEEecCcccccccHHHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 5899999999988779999998752 1 2222 345566666665432 234443 3777
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||||+||+.+...+++.|+++ . .++|+|+ ||+.+.+ +.+|++++|+ +|+++..|+.+
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~-~-~~~tvIiitHr~~~~-~~~D~ii~l~-~G~i~~~g~~~ 554 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-M-KGRTTFIIAHRLSTV-RNADRILVFD-NGRVVESGSFD 554 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-h-cCCEEEEEEecHHHH-HhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999987 4 4789888 9888655 6799999999 99999999864
No 316
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-29 Score=285.85 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=159.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|+. ..+.++|+|+|++++|||++||+||||+||||+.++|-.++ |.+|+|++||
T Consensus 465 ~IeF~~VsF-aYP~--Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 465 VIEFEDVSF-AYPT--RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred eEEEEEeee-ecCC--CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 699999999 7863 23678999999999999999999999999999999999997 6999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHH--HHH-cCCCcccccccCC----ccC---------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELV--LNQ-LGLLPYSNQLVGS----LHY--------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~--l~~-l~L~~~~~~~v~~----lSg--------- 551 (846)
+.||+|.|+|.+|..||+|||.|+.. ..+.++..+.++.. -+. .++.+-.|+.+|+ |||
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 78999999999998899999999864 33444443222221 111 2566667888875 677
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.||+||||||-||+||+++...|-+.|.++ . +|+|||+ .|.++.+ +.+|+|++++ +|++++.|+-+
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~-~-~~rTVlvIAHRLSTV-~~Ad~Ivvi~-~G~V~E~G~h~ 687 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRL-M-QGRTVLVIAHRLSTV-RHADQIVVID-KGRVVEMGTHD 687 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh-h-cCCeEEEEehhhhHh-hhccEEEEEc-CCeEEecccHH
Confidence 999999999999999999999999999997 3 4599999 9988877 5699999999 99999999753
No 317
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=3.8e-29 Score=303.37 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=154.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ +|++ +++++|+|+|+++++||.+||+|+||||||||+|+|+|+.+ .+|+|.+||
T Consensus 463 ~I~~~~vsf-~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 463 EIEFRNVSF-AYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred eEEEEEEEE-EeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 599999999 7852 24679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.|++|||.++. + ..+ ++++.++++..++.+.. |+.+| +|||
T Consensus 539 ~~i~~v~Q~~~lf~~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 539 RNIGYVPQDPRLFYGTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hccEEECCChhhhhhhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 5899999999988889999998752 1 122 23456667777665433 34443 4676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.+...+.+.|+++ . .++|+|+ +|+.+.+ +.||+|++|+ +|+++..|+.
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~-~-~~~T~iiItHrl~~~-~~~D~iivl~-~G~i~e~G~~ 683 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW-L-AGKTLVLVTHRTSLL-DLVDRIIVMD-NGRIVADGPK 683 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-h-CCCEEEEEecCHHHH-HhCCEEEEEe-CCEEEeeCCH
Confidence 999999999999999999999999999998 4 4789888 9988765 6799999999 9999999986
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.1e-28 Score=245.89 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=120.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe------------
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL------------ 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~------------ 488 (846)
++++|+++ .|+ ++++++++|+++++||+++|+|||||||||||++|+|+.+ .+|+|.++|+
T Consensus 1 l~~~~l~~-~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITK-RFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEE-EEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 46899999 775 4579999999999999999999999999999999999985 9999999983
Q ss_pred -EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC
Q 048695 489 -LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD 567 (846)
Q Consensus 489 -~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD 567 (846)
.++|++| .+..+++ ++.-+... + .+|++|+|||||+|||
T Consensus 75 ~~i~~~~q------------------------LS~G~~q-rl~laral----------~-----~~p~illlDEP~~~LD 114 (163)
T cd03216 75 AGIAMVYQ------------------------LSVGERQ-MVEIARAL----------A-----RNARLLILDEPTAALT 114 (163)
T ss_pred cCeEEEEe------------------------cCHHHHH-HHHHHHHH----------h-----cCCCEEEEECCCcCCC
Confidence 2444444 1111111 11100000 0 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 568 TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 568 ~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
+.++..+.+.|+++ +++|.|+|+ ||+.+++.+.+|++++|+ +|++++
T Consensus 115 ~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 115 PAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999 667999999 999999999999999999 999875
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=7.2e-29 Score=294.84 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=151.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ ++++|+|+|+++++||.+||+||||||||||+++|+|+.+ .+|+|.+||
T Consensus 334 ~i~~~~v~~-~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 334 AVEFRHITF-EFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred eEEEEEEEE-ECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 599999999 7752 3568999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHH-----HHHHHHc--CCCcccccccCCccC---------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHV-----ELVLNQL--GLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v-----~~~l~~l--~L~~~~~~~v~~lSg--------- 551 (846)
+.++||+|++.+++.|++||+.++.. ..+.++..+.. ++.+..+ |++...+....+|||
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 46999999998886699999987521 22333322211 1222222 344334444556887
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||||||+.+++.+.+.|+++ . .|+|+|+ +|+.+.+ +.+|++++|+ +|+++..|+.+
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~tvI~isH~~~~~-~~~d~i~~l~-~G~i~~~g~~~ 554 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDAL-R-KNRTTFIIAHRLSTV-RNADLVLFLD-QGRLIEKGSFQ 554 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH-h-CCCEEEEEEcChHHH-HcCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999987 4 4899999 9998887 5699999999 99999999864
No 320
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=3.9e-29 Score=303.35 Aligned_cols=182 Identities=20% Similarity=0.237 Sum_probs=151.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+.+ .+|+|++||
T Consensus 478 ~I~~~nVsf-~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 478 LIEFQDVSF-SYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred eEEEEEEEE-ECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 599999999 78521 23679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.++||+|++.+++.|++|||.++.. ..+ ++++.++++..++.+.. |+.+| +|||
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQR 625 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR 625 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHH
Confidence 57999999999988899999987531 122 34566778877776543 44444 3676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+||+||||||+||+.+.+.+.+ .. ...++|+|+ +|+.+.+ +.+|+|++|+ +|+++..|+.
T Consensus 626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~--~~~~~TvIiItHrl~~i-~~aD~IivL~-~G~ive~Gt~ 697 (711)
T TIGR00958 626 IAIARALVRKPRVLILDEATSALDAECEQLLQE--SR--SRASRTVLLIAHRLSTV-ERADQILVLK-KGSVVEMGTH 697 (711)
T ss_pred HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hh--ccCCCeEEEEeccHHHH-HhCCEEEEEE-CCEEEEeeCH
Confidence 9999999999999999999999988 22 335789999 9998765 5699999999 9999999986
No 321
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=5.8e-29 Score=302.46 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=153.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+. |.+|+|++||
T Consensus 473 ~I~~~~vsf-~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 473 DIVINDVSY-SYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred cEEEEEEEE-EcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHH
Confidence 589999999 7852 467999999999999999999999999999999999998 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.|++|||.++.. + ..+. +++.++++..++.+. .|+.++ +|||
T Consensus 548 ~~i~~v~Q~~~lf~gTI~eNi~l~~~---~-~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 548 QFINYLPQEPYIFSGSILENLLLGAK---E-NVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HheEEEecCceehhHHHHHHHhccCC---C-CCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 57999999999887799999998631 1 2222 345666666666442 244444 3676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.+.+.+++.|+++ .|+|+|+ +|+.+.+ +.+|++++|+ +|+++..|+.
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~-~~~D~i~~l~-~G~i~~~G~~ 692 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVA-KQSDKIIVLD-HGKIIEQGSH 692 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHH-HcCCEEEEEE-CCEEEEECCH
Confidence 899999999999999999999999999885 3789888 9988765 6799999999 9999999986
No 322
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=5.5e-29 Score=301.88 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=152.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+. |.+|+|++||
T Consensus 455 ~i~~~~vsf-~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 455 AITFENIRF-RYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred eEEEEEEEE-EcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 599999999 7852 2457999999999999999999999999999999999998 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccc----cCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQL----VGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~----v~~lSg----- 551 (846)
+.+|||+|++.+++.|++||+.++. | ..+. +++.++++..++.+. .|+. ..+|||
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 4699999999888779999998742 1 2222 234455555554432 2333 345776
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||||+||+.++..+++.|+++ . .|+|+|+ ||+.+.+. .||++++|+ +|+++..|+.+
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~-~~d~ii~l~-~G~i~~~g~~~ 676 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLSTVR-ACDRIIVLE-KGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChHHHH-hCCEEEEEe-CCEEEEeCCHH
Confidence 999999999999999999999999999998 4 5789999 99988774 599999999 99999999863
No 323
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.9e-29 Score=301.23 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=157.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------- 487 (846)
.-.++++||++ +|+. +.+..+|+|+|+.+++|+.+||+|||||||||++++|.+++ |.+|+|++||
T Consensus 348 ~g~ief~nV~F-sYPs--Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 348 KGEIEFRNVCF-SYPS--RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred ccceEEEEEEe-cCCC--CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence 34699999999 7863 23568999999999999999999999999999999999997 6999999999
Q ss_pred --eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCC----ccC---
Q 048695 488 --LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLG-------LLPYSNQLVGS----LHY--- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~v~~----lSg--- 551 (846)
.+||.|.|+|.++..|++||+.|+.. +.+. ++++++.+..+ |.+-.|+.+|+ |||
T Consensus 425 lr~~iglV~QePvlF~~tI~eNI~~G~~-----dat~----~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK 495 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLFATTIRENIRYGKP-----DATR----EEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK 495 (1228)
T ss_pred HHhhcCeeeechhhhcccHHHHHhcCCC-----cccH----HHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence 68999999999988899999998631 2222 23444444333 33344555553 777
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+|||||||||+||+++.+.+.+.|.+. ..|+|.|+ +|.++.+.+ +|++++++ +|++++.|+.
T Consensus 496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~--~~grTTivVaHRLStIrn-aD~I~v~~-~G~IvE~G~h 571 (1228)
T KOG0055|consen 496 QRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA--SKGRTTIVVAHRLSTIRN-ADKIAVME-EGKIVEQGTH 571 (1228)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh--hcCCeEEEEeeehhhhhc-cCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999996 45777777 999999977 99999999 9999999998
Q ss_pred CC
Q 048695 621 GS 622 (846)
Q Consensus 621 ~~ 622 (846)
++
T Consensus 572 ~E 573 (1228)
T KOG0055|consen 572 DE 573 (1228)
T ss_pred HH
Confidence 65
No 324
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=235.16 Aligned_cols=169 Identities=20% Similarity=0.163 Sum_probs=151.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----ccceEEEcC---------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP----FTGSLNGNV--------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~----~~G~I~~~G--------- 487 (846)
+++++||+. +.+ ++.+|.+||++|.+||++-|||||||||||||..+.|.+. .+|++.+|+
T Consensus 2 ~l~l~nvsl-~l~-----g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSL-RLP-----GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeee-cCC-----CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 688999998 544 7899999999999999999999999999999999999873 899999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
|++|..+||+.+||+ +|.+||.|+. |..+..+.++..++..|++.||+...++.+.++|| +
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 889999999999999 9999999864 33444456777899999999999999999999998 9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
+|+.++||||+|.||..-+.+..+.+-.-.+..|...+. |||..++.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999999999999999876554788998888 99998774
No 325
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=7e-29 Score=294.50 Aligned_cols=183 Identities=21% Similarity=0.265 Sum_probs=154.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ ++++|+|+|+.++|||.+||+||||||||||++.|.|+.+ .+|+|++||
T Consensus 328 ~I~f~~vsf-~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 328 SIEFENVSF-SYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred eEEEEEEEE-EcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 499999999 7862 5789999999999999999999999999999999999985 899999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC-------CcccccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGL-------LPYSNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~v~----~lSg----- 551 (846)
+.+|||+|++.++..||+||+.++.. ..++++ +.++++..++ .+-.|+.+| .|||
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~-----~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRP-----DATDEE----IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 68999999999998899999998732 123333 3333333332 334566676 4776
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||||+||+.+...|.+.++++ . +|+|+++ +|.++.+.. +|+|++|+ +|++++.|+.+
T Consensus 474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l-~-~~rT~iiIaHRlsti~~-aD~IiVl~-~G~i~e~G~h~ 548 (567)
T COG1132 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKL-L-KGRTTLIIAHRLSTIKN-ADRIIVLD-NGRIVERGTHE 548 (567)
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHH-h-cCCEEEEEeccHhHHHh-CCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999999999999988 4 5678888 888877766 99999999 99999999983
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-28 Score=293.09 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=157.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+|+++||++ .|+ ++.+|+|+|+.+++|+++||+|||||||||||++|+|+.+ ++|+|.+++ ..+||++|+.
T Consensus 311 ~~l~~~~l~~-~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 311 PLLKMEKVSA-GYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred ceEEEEeeEE-EeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 4799999999 786 5689999999999999999999999999999999999985 999999975 6899999974
Q ss_pred --cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEEEe
Q 048695 498 --AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 498 --~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
.+.+. |+.+++.- .. .....++++++|+.+++. +..++++++||| .+|++||||
T Consensus 385 ~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 385 LEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred hhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 34556 88887641 11 122345788999999996 478999999998 899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
|||+|||+.++..+.+.|+++ .| |||+ |||.+++.++||++++|+ +|+++ +.|+.
T Consensus 456 EPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~i~~l~-~G~i~~~~g~~ 512 (638)
T PRK10636 456 EPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDDLYLVH-DGKVEPFDGDL 512 (638)
T ss_pred CCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCEEEEEE-CCEEEEcCCCH
Confidence 999999999999999999987 24 8888 999999999999999999 99997 77876
No 327
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=1.5e-28 Score=292.20 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=154.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ .++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+ .+|+|++||
T Consensus 330 ~i~~~~v~f-~y~~---~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTF-RYPG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred eEEEEEEEE-EcCC---CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 599999999 7752 13579999999999999999999999999999999999984 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.++||+|++.+++.|++|||.++.. ...+ +++++++++.+|+.+.. |+.++ .|||
T Consensus 406 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQR 477 (571)
T TIGR02203 406 RQVALVSQDVVLFNDTIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR 477 (571)
T ss_pred hhceEEccCcccccccHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 46999999998887799999987521 0122 34577788888776433 34443 3676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+||||||+||+.+++.+++.|+++ + .++|+|+ ||+.+. .+.||++++|+ +|+++..|+.+
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~-~-~~~tiIiitH~~~~-~~~~D~ii~l~-~g~i~~~g~~~ 552 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERL-M-QGRTTLVIAHRLST-IEKADRIVVMD-DGRIVERGTHN 552 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-h-CCCEEEEEehhhHH-HHhCCEEEEEe-CCEEEeeCCHH
Confidence 999999999999999999999999999987 4 4689888 888855 57799999999 99999998863
No 328
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=1.4e-28 Score=291.83 Aligned_cols=184 Identities=20% Similarity=0.202 Sum_probs=151.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|+.+ .+|+|.+||
T Consensus 313 ~I~~~~v~~-~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQF-TYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEE-ECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 489999999 7752 24579999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccc----CCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLV----GSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v----~~lSg----- 551 (846)
+.++||+|++.+++.|++||+.++.. ..+. ++++++++..++.+. .|+.+ .+|||
T Consensus 389 ~~i~~v~q~~~lf~~ti~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR 459 (569)
T PRK10789 389 SRLAVVSQTPFLFSDTVANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR 459 (569)
T ss_pred hheEEEccCCeeccccHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 46999999998887799999987521 1222 244556666655432 23333 35777
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||||||+.++..+.+.|+++ . .|+|+|+ +|+.+.+ +.+|++++|+ +|+++..|+.+
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~tii~itH~~~~~-~~~d~i~~l~-~G~i~~~g~~~ 534 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW-G-EGRTVIISAHRLSAL-TEASEILVMQ-HGHIAQRGNHD 534 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH-h-CCCEEEEEecchhHH-HcCCEEEEEe-CCEEEEecCHH
Confidence 999999999999999999999999999997 4 5899999 8888765 5699999999 99999999863
No 329
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=1.8e-28 Score=291.72 Aligned_cols=184 Identities=21% Similarity=0.248 Sum_probs=153.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|+. .+++.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+ .+|+|.+||
T Consensus 337 ~i~~~~v~f-~y~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 337 EIEFEQVNF-AYPA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred eEEEEEEEE-ECCC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 589999999 7752 123679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.+||++|++.+++.|++||+.++. | ..+ +++++++++.+|+.+.. |+.++ +|||
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 4799999999988889999998742 1 122 24566777777765432 33333 3676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+||||||+||+.+++.+++.|+++ . .++|+|+ ||+.+.+ +.+|+++.|+ +|+++..|+.
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~-~-~~~t~IiitH~~~~~-~~~d~vi~l~-~g~~~~~g~~ 558 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-M-KGRTTLIIAHRLATV-LKADRIVVMD-QGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHH-h-CCCEEEEEecchHHH-HhCCEEEEEE-CCEEEeeecH
Confidence 899999999999999999999999999998 4 4789999 8888665 6799999999 9999999986
No 330
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=2.7e-28 Score=260.07 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=148.2
Q ss_pred ceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEE-----------EcC------
Q 048695 426 GLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLN-----------GNV------ 487 (846)
Q Consensus 426 ~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~-----------~~G------ 487 (846)
||++ +|++ ++.+|+|+| .+++||+++|+||||||||||||+|+|+.+ ++|+|. ++|
T Consensus 5 ~~~~-~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 5 EPVH-RYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred Ccce-eecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 5777 6751 236999999 599999999999999999999999999985 999996 667
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--------
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------- 551 (846)
..++|++|+....+.++.+++.... + ..+.++.++++++.+||++..++.++++|+
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hHHhhhcccceeeecchhccCchHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 1368888986666557777777642 1 223345788999999999999999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++++|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+.+++.++||++++|+ |++.+.|-
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l-~~~~~tIIiiSHd~~~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYVLVVEHDLAVLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHhCCEEEEEC--CCCCccee
Confidence 899999999999999999999999999999 667899999 999999999999999997 55665443
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.2e-28 Score=289.31 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=153.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~~~ 498 (846)
+|+++||++ .|+ ++.+|+|||++|++|+++||+||||||||||||+|+|.. |++|+|.++| ..+||++|+..
T Consensus 1 ~i~i~nls~-~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~ 74 (638)
T PRK10636 1 MIVFSSLQI-RRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP 74 (638)
T ss_pred CEEEEEEEE-EeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 488999999 786 578999999999999999999999999999999999987 5999999998 57999999753
Q ss_pred CCCCCHHHHHHHHH-----------------------hhhc-CCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--
Q 048695 499 HQTYSVSESIQFSA-----------------------ALRV-GKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-- 551 (846)
Q Consensus 499 ~~~~TV~E~l~f~a-----------------------~lr~-~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-- 551 (846)
....|+.+.+.-.. .++. .......+..++++++|+.+|+. +..++++++|||
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGW 154 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHH
Confidence 33226555442110 0000 00001112345789999999997 578999999998
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-Eec
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFG 618 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G 618 (846)
.+|++|||||||+|||+.+...+.+.|+++ +.|||+ |||.+.+.++||++++|+ +|++. |.|
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~-~G~i~~~~g 229 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE-QQSLFEYTG 229 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe-CCEEEEecC
Confidence 899999999999999999999999998875 458888 999999999999999999 99996 566
Q ss_pred CCC
Q 048695 619 PRG 621 (846)
Q Consensus 619 ~~~ 621 (846)
+..
T Consensus 230 ~~~ 232 (638)
T PRK10636 230 NYS 232 (638)
T ss_pred CHH
Confidence 544
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=1.5e-27 Score=285.78 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=157.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEecc
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKL 496 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~ 496 (846)
..+|+++||++ .|+ ++.+|+|+|+++++|++++|+|||||||||||++|+|+. |++|+|.++. ..+||++|+
T Consensus 317 ~~~l~~~~l~~-~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~ 390 (635)
T PRK11147 317 KIVFEMENVNY-QID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQH 390 (635)
T ss_pred CceEEEeeeEE-EEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCc
Confidence 34799999999 776 567999999999999999999999999999999999997 4999999944 479999997
Q ss_pred C-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEEEe
Q 048695 497 D-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 497 ~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
. .+++. ||.|++.+..... ... ....++.++|+.+++. +..++++++||| .+|++||||
T Consensus 391 ~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD 465 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465 (635)
T ss_pred ccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 57788 9999998753211 111 1234678899999996 578999999998 899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE-ecC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY-FGP 619 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~-~G~ 619 (846)
|||+|||+.++..+.+.|+++ +.|||+ |||.+++..+||++++|+.+|++.. .|+
T Consensus 466 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 466 EPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred CCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence 999999999999999999876 348888 9999999999999999963588864 444
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=248.95 Aligned_cols=174 Identities=19% Similarity=0.175 Sum_probs=153.4
Q ss_pred eEEEEeceeeeeeccCC--CCC--cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEe
Q 048695 420 VTFVFEGLTFSRYEEGS--NES--TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVE 494 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~--~~~--~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~ 494 (846)
.+++++||++ .|..+. +.. ..+++||||++++||+++|+|+||||||||-|+|.|+.+ ++|+|+++|+.+-
T Consensus 3 ~ll~v~~l~k-~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~--- 78 (268)
T COG4608 3 PLLEVKNLKK-YFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT--- 78 (268)
T ss_pred ceEEEeccEE-EEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh---
Confidence 4799999999 775321 122 479999999999999999999999999999999999985 9999999984411
Q ss_pred ccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEEe
Q 048695 495 KLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 495 Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
..++++..+++.++|+.+||.+ .++++++++|| .+|+++++|
T Consensus 79 ------------------------~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~D 134 (268)
T COG4608 79 ------------------------KLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD 134 (268)
T ss_pred ------------------------hcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEec
Confidence 0114566778999999999975 88999999998 899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
||||+||...+.+|+++|++++++.|.|.++ +||++.+..++||+.+|. .|+++..|+.++
T Consensus 135 EpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy-~G~iVE~g~~~~ 196 (268)
T COG4608 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMY-LGKIVEIGPTEE 196 (268)
T ss_pred CchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEe-cCceeEecCHHH
Confidence 9999999999999999999998788999999 999999999999999999 999999998864
No 334
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.95 E-value=1.6e-27 Score=281.66 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=149.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|+++ .|++ ++++|+|+|+++++||.+||+||||||||||+++|+|+.+ .+|+|.+||
T Consensus 322 ~i~~~~v~f-~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTF-AYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEE-EeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 599999999 7851 3569999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-----cCCccC-----------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-----VGSLHY----------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----v~~lSg----------- 551 (846)
+.++||+|++.+++.|++|| + . +..++.+++.++.+++.+..+.. -.+|||
T Consensus 397 ~~i~~v~q~~~lf~~ti~~n---~---~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQLLGPE---G---K-------PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHHhhccc---c---C-------chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 57999999998887788887 1 0 12234678889999987654322 136787
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|+||||||+||+.++..+.+.+.+..++.|+|+|+ +|+.+. .+.+|++++|+ +|+++....
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i~~l~-~G~i~e~~~ 532 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRLLEMR-NGQLSELTG 532 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEEEEEE-CCEEEEecC
Confidence 9999999999999999999999999998763446899999 888754 56899999999 999987643
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=2.5e-27 Score=238.22 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=129.7
Q ss_pred eceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCC
Q 048695 425 EGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYS 503 (846)
Q Consensus 425 ~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~T 503 (846)
.||++ .|+ ++.+++++ +++++||+++|+||||||||||+|+|+|+.+ ++|+|.++|..++|++|+..
T Consensus 4 ~~l~~-~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~----- 71 (177)
T cd03222 4 PDCVK-RYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID----- 71 (177)
T ss_pred CCeEE-EEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-----
Confidence 57888 776 56789885 8999999999999999999999999999975 99999999999999999743
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 048695 504 VSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQI 583 (846)
Q Consensus 504 V~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~ 583 (846)
.+..+++ ++.-.... + .+|++++|||||+|||+.++..+.+.++++ +
T Consensus 72 ----------------LSgGq~q-rv~laral----------~-----~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~ 118 (177)
T cd03222 72 ----------------LSGGELQ-RVAIAAAL----------L-----RNATFYLFDEPSAYLDIEQRLNAARAIRRL-S 118 (177)
T ss_pred ----------------CCHHHHH-HHHHHHHH----------h-----cCCCEEEEECCcccCCHHHHHHHHHHHHHH-H
Confidence 1112211 11111000 0 689999999999999999999999999999 5
Q ss_pred hc-CcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe--cCCCCChHHHHHHHhh
Q 048695 584 RS-GHYCLS-NTPYARTVPFFDLALILTKEGHQAYF--GPRGSNHDIILDYFLL 633 (846)
Q Consensus 584 ~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~--G~~~~~~~~l~~~f~~ 633 (846)
++ +.|||+ ||+.+++.++||++++|+ ++..++. |+|+...+.+..|+.+
T Consensus 119 ~~~~~tiiivsH~~~~~~~~~d~i~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 119 EEGKKTALVVEHDLAVLDYLSDRIHVFE-GEPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HcCCCEEEEEECCHHHHHHhCCEEEEEc-CCCccceeccCCcchhHHHHHHHHh
Confidence 55 489999 999999999999999999 6666654 7877655556666643
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.95 E-value=2e-27 Score=280.89 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=150.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|++.+..++.+|+|+|+++++||.+||+||||||||||+++|+|.. |++|+|.+||
T Consensus 337 ~i~~~~v~f-~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 337 SIELKDVHM-NPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred eEEEEEEEE-EeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 599999999 78632111246999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCccC----------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLV------GSLHY---------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v------~~lSg---------- 551 (846)
+.++||+|++.++..|++||.. + +..+++++++++.+++.+..++.+ .+|||
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaR 483 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALIC 483 (555)
T ss_pred hhCcEEccChhhhhhhhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHH
Confidence 4689999998888779888841 1 123346788999999987665544 35777
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILS-LCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~-~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|+||||||+||+.+.+.+.+.+. .+ +..|+|+|+ +|+.+. .+.+|++++|+ +|+++..
T Consensus 484 all~~~~ililDE~ts~LD~~~~~~i~~~l~~~~-~~~~~tiiiisH~~~~-~~~~d~i~~l~-~G~i~~~ 551 (555)
T TIGR01194 484 AWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL-KRQGKTIIIISHDDQY-FELADQIIKLA-AGCIVKD 551 (555)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeccHHH-HHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999998664 45 567899999 998865 57899999999 9999754
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=4.4e-27 Score=281.86 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=153.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~~~ 498 (846)
+|+++||++ .|+ ++.+|+|||+++++|++++|+||||||||||||+|+|+. |++|+|.++| ..++|++|.+.
T Consensus 3 ~l~i~~ls~-~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWL-SFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEE-EeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCC
Confidence 699999999 786 578999999999999999999999999999999999997 4999999998 46899999764
Q ss_pred CCCC-CHHHHHHHHH------------------------------hhh--cCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 048695 499 HQTY-SVSESIQFSA------------------------------ALR--VGKTVNAMRRHIHVELVLNQLGLLPYSNQL 545 (846)
Q Consensus 499 ~~~~-TV~E~l~f~a------------------------------~lr--~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 545 (846)
.... +|.+++..+. .+. .. .....+...+++++++.+|+. .+++
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~--~~~~ 153 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLD--PDAA 153 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCC--CCCc
Confidence 4444 7777643111 000 00 000112345789999999997 3889
Q ss_pred cCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC
Q 048695 546 VGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE 611 (846)
Q Consensus 546 v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~ 611 (846)
+++||| .+|+||||||||+|||+.++..+.+.|+++ . .|||+ |||...+.+.||+++.|+ +
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~---~tvlivsHd~~~l~~~~d~i~~L~-~ 228 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-Q---GSIIFISHDRSFIRNMATRIVDLD-R 228 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-C---CEEEEEeCCHHHHHHhcCeEEEEE-C
Confidence 999998 899999999999999999999999999987 3 48888 999999999999999999 9
Q ss_pred CEEE-EecCCC
Q 048695 612 GHQA-YFGPRG 621 (846)
Q Consensus 612 G~~v-~~G~~~ 621 (846)
|+++ +.|+.+
T Consensus 229 G~i~~~~g~~~ 239 (635)
T PRK11147 229 GKLVSYPGNYD 239 (635)
T ss_pred CEEEEecCCHH
Confidence 9997 557654
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=6.1e-27 Score=281.34 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=152.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++||++ .|++ ++.+|+|+|+++++|++++|+||||||||||||+|+|+.+ .+|+|.+++ ..+||++|+.
T Consensus 507 ~~L~~~~ls~-~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 507 PIISFSDASF-GYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred ceEEEEeeEE-EeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc
Confidence 4799999999 7741 3569999999999999999999999999999999999975 999999988 6799999975
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEEeCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLLEEP 562 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlLDEP 562 (846)
.+. ++.++.........+ ... .++++++|+.+||.+ ..++++++||| .+|++||||||
T Consensus 582 --~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 582 --VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred --cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 234 666654332211111 111 346789999999984 78999999998 89999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 563 LSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 563 TsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
|+|||+.++..+++.|++. .| |||+ |||.+.+..+||++++|+ +|+++ +.|+.
T Consensus 655 T~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~l~-~G~i~~~~g~~ 709 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWVVS-EGKVTPFHGTF 709 (718)
T ss_pred CCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 9999999999998888765 24 8888 999999999999999999 99998 67765
No 339
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=1.1e-27 Score=282.24 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=144.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++++|+|+|+++++||.+||+||||||||||+|+|+|+.+ .+|+|.+||
T Consensus 320 ~i~~~~v~f-~y~~---~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSV-AYPG---RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEE-ECCC---CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 599999999 7852 13579999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.|++||+.++.. ..+ +++++++++..++.+.. |+.+| +|||
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARP-----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCC-----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 46999999999887799999987531 112 24567777887776543 33443 4676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL 608 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL 608 (846)
.+|++|+||||||+||+.+.+.+.+.|+++ . .|+|+|+ +|+.+.+ +.||++++|
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL-A-QGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHh-c-CCCEEEEEecCHHHH-HhCCEEEeC
Confidence 999999999999999999999999999997 4 5789988 9998776 679999875
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=2.7e-27 Score=284.17 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=149.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~~ 498 (846)
.++++||++ .|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.+++ +.++||+|++.
T Consensus 451 ~i~~~nv~~-~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~ 525 (659)
T TIGR00954 451 GIKFENIPL-VTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY 525 (659)
T ss_pred eEEEEeeEE-ECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC
Confidence 699999999 6641 3579999999999999999999999999999999999986 899999987 68999999987
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc---------CCccC-------------CCCcE
Q 048695 499 HQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLV---------GSLHY-------------HCPSI 556 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v---------~~lSg-------------~~P~i 556 (846)
+++.|++||+.++...+... .++..+++++++++.+||++..+++. ++||| .+|++
T Consensus 526 l~~~tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i 603 (659)
T TIGR00954 526 MTLGTLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF 603 (659)
T ss_pred CCCcCHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 76669999998764321000 01112346788999999988766643 57887 99999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
|+|||||||||+.++..+.+.+++ .|+|+|+ +|+.+.+ +.+|++++|+.+|
T Consensus 604 llLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~~~g 655 (659)
T TIGR00954 604 AILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMDGRG 655 (659)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEeCCC
Confidence 999999999999999999988865 3889999 9998875 7899999998444
No 341
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=2.9e-27 Score=305.50 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=155.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ +|.+ +.+++|+|||+++++||.+||+|+||||||||+++|.|+. |.+|+|.+||
T Consensus 1234 ~I~f~nVsf-~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHL-RYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEEE-EECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 599999999 8852 2357999999999999999999999999999999999998 4999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~----~lSg----- 551 (846)
++++||||++.+++.|+||||..+. ..+ ++++.++++..+|.+.. |+.++ +|||
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence 5799999999999889999997531 122 23567777777775432 34443 4676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+||||||+||+++.+.|.+.|++. .+++|+|+ +|..+.+.. ||||++|+ +|+++..|+++
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~--~~~~TvI~IAHRl~ti~~-~DrIlVL~-~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE--FKSCTMLVIAHRLNTIID-CDKILVLS-SGQVLEYDSPQ 1454 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHh-CCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999986 35799999 999987765 99999999 99999999984
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=3.9e-27 Score=304.51 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=156.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ +|.+ +.+++|+|||++++|||.+||+|+||||||||+++|.|+++ .+|+|++||
T Consensus 1237 ~I~f~nVsf-~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR 1312 (1622)
T PLN03130 1237 SIKFEDVVL-RYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312 (1622)
T ss_pred cEEEEEEEE-EeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHH
Confidence 599999999 8852 23579999999999999999999999999999999999974 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg----- 551 (846)
+++|+|||++.+++.|+||||..+. ..+ ++++.++++..++.+. .|+.++ +|||
T Consensus 1313 ~~IsiVpQdp~LF~GTIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr 1382 (1622)
T PLN03130 1313 KVLGIIPQAPVLFSGTVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL 1382 (1622)
T ss_pred hccEEECCCCccccccHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH
Confidence 6799999999999889999997531 112 2456777777776543 344444 4666
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||+||||||+||+.+...|.+.|++. . +++|+|+ +|.++.+.. ||||++|+ +|++++.|++++
T Consensus 1383 laLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~-~DrIlVLd-~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1383 LSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIID-CDRILVLD-AGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHh-CCEEEEEE-CCEEEEeCCHHH
Confidence 999999999999999999999999999997 3 5799999 999988765 99999999 999999999843
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.94 E-value=8.6e-27 Score=256.45 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=165.2
Q ss_pred CCCCCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----
Q 048695 413 KGIPVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---- 487 (846)
Q Consensus 413 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---- 487 (846)
..+|...-.+.++++++ ..+ +.++++|+||||.+++||.+||+||||||||||.|+|.|..+ .+|.|++||
T Consensus 326 m~LP~P~g~L~Ve~l~~-~PP---g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 326 MPLPAPQGALSVERLTA-APP---GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred CCCCCCCceeeEeeeee-cCC---CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 45666666899999998 432 346899999999999999999999999999999999999974 999999999
Q ss_pred --------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHH-----HHHHHHHHHHHHcCCCcccccccCC----cc
Q 048695 488 --------LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAM-----RRHIHVELVLNQLGLLPYSNQLVGS----LH 550 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~-----~~~~~v~~~l~~l~L~~~~~~~v~~----lS 550 (846)
+.|||.||+-.+|+.||.||+.= ...+.+.+ .+.+.|+|++- .|.+=.|+.+|+ ||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G~~LS 474 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIAR-----FGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGGATLS 474 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCCCCCC
Confidence 78999999999999999999962 21122222 12233444443 455567788874 67
Q ss_pred C-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 551 Y-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 551 g-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
| .+|.+++||||-|+||......+.+.|.++ ++.|.|+|+ +|..+ +...+|+|++|+ +|++..
T Consensus 475 gGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-k~rG~~vvviaHRPs-~L~~~Dkilvl~-~G~~~~ 551 (580)
T COG4618 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVVVIAHRPS-ALASVDKILVLQ-DGRIAA 551 (580)
T ss_pred chHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH-HHcCCEEEEEecCHH-HHhhcceeeeec-CChHHh
Confidence 6 999999999999999999999999999999 888888888 87764 567899999999 999999
Q ss_pred ecCCCCChHHHHHHHhh
Q 048695 617 FGPRGSNHDIILDYFLL 633 (846)
Q Consensus 617 ~G~~~~~~~~l~~~f~~ 633 (846)
+|+. +++......
T Consensus 552 FG~r----~eVLa~~~~ 564 (580)
T COG4618 552 FGPR----EEVLAKVLR 564 (580)
T ss_pred cCCH----HHHHHHhcC
Confidence 9998 455554443
No 344
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.1e-27 Score=223.58 Aligned_cols=188 Identities=18% Similarity=0.232 Sum_probs=158.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++++++ .|+ ...-.+||||.+.|||+.+|+|.|||||||||++|++++ |++|+|.+.-
T Consensus 6 LL~V~~lsk-~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 6 LLSVSGLSK-LYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred ceeehhhhh-hhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 799999999 887 566789999999999999999999999999999999998 5999999864
Q ss_pred ---------eEEEEEeccCc--C----CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCcc
Q 048695 488 ---------LLLCYVEKLDA--H----QTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLH 550 (846)
Q Consensus 488 ---------~~igyv~Q~~~--~----~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lS 550 (846)
..-|+|.|++. + ... .+.|-+.--.. | .-...++...++|++++++. ..|..+...|
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-R-----HYG~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-R-----HYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-h-----hhhhHHHHHHHHHHhcccCcccccCcccccc
Confidence 25799999863 2 223 55555542211 1 11345667889999999974 4577788888
Q ss_pred C-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 551 Y-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 551 g-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
| ..|+++|+||||-|||..-+..++++++.+..+.|.++++ |||+..+.-++||+++|+ +|+++.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk-~g~vve 232 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK-QGQVVE 232 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeec-CCCEec
Confidence 7 8999999999999999999999999999998889999999 999999999999999999 999999
Q ss_pred ecCCC
Q 048695 617 FGPRG 621 (846)
Q Consensus 617 ~G~~~ 621 (846)
.|-.+
T Consensus 233 ~GLTD 237 (258)
T COG4107 233 SGLTD 237 (258)
T ss_pred ccccc
Confidence 99764
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=8.2e-27 Score=227.52 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=117.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccCcC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLDAH 499 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~~~ 499 (846)
++++|+++ .|+ ++.+|+++|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++| +.++|++|
T Consensus 1 l~~~~l~~-~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~---- 70 (144)
T cd03221 1 IELENLSK-TYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ---- 70 (144)
T ss_pred CEEEEEEE-EEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc----
Confidence 46889999 775 3579999999999999999999999999999999999985 999999999 68999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILS 579 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~ 579 (846)
+ +..+++ ++.-+... + .+|++++|||||+|||+.++..+.+.++
T Consensus 71 --------------l------S~G~~~-rv~laral----------~-----~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 71 --------------L------SGGEKM-RLALAKLL----------L-----ENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred --------------C------CHHHHH-HHHHHHHH----------h-----cCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0 111111 11100000 0 7899999999999999999999999998
Q ss_pred HHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 580 LCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 580 ~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
++ ++|+++ ||+.+++.+.+|++++|+ +||
T Consensus 115 ~~----~~til~~th~~~~~~~~~d~v~~l~-~g~ 144 (144)
T cd03221 115 EY----PGTVILVSHDRYFLDQVATKIIELE-DGK 144 (144)
T ss_pred Hc----CCEEEEEECCHHHHHHhCCEEEEEe-CCC
Confidence 86 368888 999999999999999999 875
No 346
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=2.6e-27 Score=303.51 Aligned_cols=185 Identities=18% Similarity=0.215 Sum_probs=154.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc----------------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---------------------- 478 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---------------------- 478 (846)
.++++||++ .|+.. .++++|+|+|+++++|+.+||+||||||||||+++|.|+++
T Consensus 1165 ~I~f~nVsF-~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNF-RYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEE-ECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 599999999 88521 24579999999999999999999999999999999999974
Q ss_pred ---------------------------------ccceEEEcC------------eEEEEEeccCcCCCCCHHHHHHHHHh
Q 048695 479 ---------------------------------FTGSLNGNV------------LLLCYVEKLDAHQTYSVSESIQFSAA 513 (846)
Q Consensus 479 ---------------------------------~~G~I~~~G------------~~igyv~Q~~~~~~~TV~E~l~f~a~ 513 (846)
.+|+|++|| +.+|||+|++.+|+.|++|||.++..
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 499999999 57999999999997799999998621
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCC----ccC-------------CCCcEEEEeCCCCCCCHH
Q 048695 514 LRVGKTVNAMRRHIHVELVLNQLGLLP-------YSNQLVGS----LHY-------------HCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 514 lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~v~~----lSg-------------~~P~iLlLDEPTsgLD~~ 569 (846)
..+. +.++++++..++.+ -.|+.+|+ ||| .+|+||+||||||+||+.
T Consensus 1322 -----~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1322 -----DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392 (1466)
T ss_pred -----CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 2232 34666666666544 34666654 776 999999999999999999
Q ss_pred HHHHHHHHHHHHHh-hcCcEEEE-ecChhhHHhhcCEEEEEccC----CEEE-EecCC
Q 048695 570 GTLTILNILSLCQI-RSGHYCLS-NTPYARTVPFFDLALILTKE----GHQA-YFGPR 620 (846)
Q Consensus 570 ~~~~i~~~l~~l~~-~~g~tvi~-~h~~~~i~~~~D~vllL~~~----G~~v-~~G~~ 620 (846)
+.+.|.+.|+++ + ..|+|+|+ +|.++.+ +.||+|++|+ + |+++ ..|+.
T Consensus 1393 sE~~I~~~L~~~-~~~~~~TvIiIaHRlsti-~~aD~Ivvl~-~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1393 SEKLIEKTIVDI-KDKADKTIITIAHRIASI-KRSDKIVVFN-NPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HHHHHHHHHHHH-hccCCCEEEEEechHHHH-HhCCEEEEEe-CCCCCCCEEEEecCH
Confidence 999999999998 4 46899999 9988766 5699999999 7 8855 78876
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=5.8e-27 Score=300.34 Aligned_cols=187 Identities=14% Similarity=0.201 Sum_probs=150.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEc-C-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGN-V----------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~-G----------- 487 (846)
.|+++||++ .|+.. .++++|+|+|+++++||++||+||||||||||+++|+|++ |.+|+|+++ |
T Consensus 382 ~I~~~nVsf-~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRF-HYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEE-EcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 599999999 78621 2357999999999999999999999999999999999997 599999995 4
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhc----------CCC-----------------------------C-------
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRV----------GKT-----------------------------V------- 520 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~----------~~~-----------------------------~------- 520 (846)
+.+|||+|++.+++.||+||+.++..... +.. .
T Consensus 459 r~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 46999999998887799999998742100 000 0
Q ss_pred --CHHHHHHHHHHHHHHcCCCccc-------c----cccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHH
Q 048695 521 --NAMRRHIHVELVLNQLGLLPYS-------N----QLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTI 574 (846)
Q Consensus 521 --~~~~~~~~v~~~l~~l~L~~~~-------~----~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i 574 (846)
..+..++++.++++.+++.+.. | ....+||| .+|+|||||||||+||+.++..|
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 0011235678888888876542 2 33456787 99999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 575 LNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 575 ~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+.|+++.++.|+|+|+ +|+.+.+ +.||+|++|+ +|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~-~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLS-NR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEe-CC
Confidence 99999993336899999 9999887 6899999999 65
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.1e-26 Score=233.47 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=117.4
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCe-------EEEEEeccCcCCCCCHHHHHHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVL-------LLCYVEKLDAHQTYSVSESIQFS 511 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~-------~igyv~Q~~~~~~~TV~E~l~f~ 511 (846)
.+.+|+|+|+++++|++++|+||||||||||||+|.+ .+|++.++|+ .++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccccccEEEEhH----------------
Confidence 5689999999999999999999999999999999964 6899988762 2444433
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CC--CcEEEEeCCCCCCCHHHHHHHH
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HC--PSILLLEEPLSGVDTIGTLTIL 575 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~--P~iLlLDEPTsgLD~~~~~~i~ 575 (846)
.+.++.++|.+ ..++++++||+ .+ |++|+|||||+|||+.++..+.
T Consensus 68 ------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 68 ------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred ------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 35788899986 48889999998 78 9999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 576 NILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 576 ~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
+.|+++ ++.|+|||+ ||+.+++ +.+|++++|+ +|+.
T Consensus 130 ~~l~~~-~~~g~tvIivSH~~~~~-~~~d~i~~l~-~g~~ 166 (176)
T cd03238 130 EVIKGL-IDLGNTVILIEHNLDVL-SSADWIIDFG-PGSG 166 (176)
T ss_pred HHHHHH-HhCCCEEEEEeCCHHHH-HhCCEEEEEC-CCCC
Confidence 999999 667999999 9999886 6799999997 5544
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=8.5e-27 Score=300.73 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=157.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~ 488 (846)
.++++||++ +|++ +.+.+|+|||++|++||.+||+|+||||||||+++|.|+.+.+|+|++|| +
T Consensus 1217 ~I~f~nVs~-~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTA-KYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred eEEEEEEEE-EeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHh
Confidence 599999999 7863 24689999999999999999999999999999999999988899999999 5
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg------ 551 (846)
+++||||++.+++.||||||.... .. .++++.++|+.++|.+. .|+.++ ++|+
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 799999999999889999995321 11 23467888998888653 344454 3565
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+||||||+||+.+...|.+.|++. ..++|||+ +|.++.+. .||||++|+ +|+++..|++.
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~--~~~~TvI~IaHRl~ti~-~~DrIlvL~-~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS--FSNCTVILSEHRVEALL-ECQQFLVIE-GSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH--cCCCEEEEEecCHHHHH-hCCEEEEEE-CCEEEEeCCHH
Confidence 899999999999999999999999999986 35799999 99987765 499999999 99999999984
No 350
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=5.6e-27 Score=276.13 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=134.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
.++++||++ .|++ ++++|+|+|+++++||.+||+||||||||||+|+|+|+.+ .+|+|.+|| +
T Consensus 334 ~I~~~~vsf-~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSF-GYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEEE-ecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 599999999 7852 3469999999999999999999999999999999999985 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg------ 551 (846)
.+|||+|++.+++.|++|||.++. + ..+ +++++++++..++++. .|+.+|+ |||
T Consensus 409 ~i~~V~Q~~~lF~~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRi 479 (529)
T TIGR02868 409 RISVFAQDAHLFDTTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRL 479 (529)
T ss_pred heEEEccCcccccccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHH
Confidence 799999999999889999999852 1 122 3457778888877653 3555553 676
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTP 594 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~ 594 (846)
.+|+||+||||||+||+.+.+.|.+.|+++ ..++|+|+ +|+
T Consensus 480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~--~~~~TvIiItHr 528 (529)
T TIGR02868 480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA--LSGKTVVVITHH 528 (529)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--cCCCEEEEEecC
Confidence 999999999999999999999999999986 45789888 885
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=1.6e-26 Score=298.94 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=154.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ +|++. ...+|+|||++++|||.+||+|+||||||||+++|.|+++ .+|+|.+||
T Consensus 1284 ~I~f~nVsf-~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1284 RVEFRNYCL-RYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred cEEEEEEEE-EeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 599999999 88621 3479999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg----- 551 (846)
++++||||++.+++.|+||||.... ..++ +.+.++++..+|.+. .|+.+++ +||
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 5799999999999889999996311 1222 346777888777543 3455543 666
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+||||||+||+++...|.+.|++. .+++|+|+ +|..+.+.. +|||++|+ +|+++..|+++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~--~~~~TvI~IAHRl~ti~~-~DrIlVld-~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ--FEDCTVLTIAHRLNTIMD-YTRVIVLD-KGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH--cCCCEEEEEecCHHHHHh-CCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999986 35789999 999877754 89999999 99999999984
No 352
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=2.2e-26 Score=297.11 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=155.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.|+++||++ +|.+ +.+.+|+|||++|++||.+||+|+||||||||+++|.|+++ .+|+|++||
T Consensus 1308 ~I~f~nVsf-~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQM-RYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEEE-EeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 599999999 8852 13469999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg----- 551 (846)
+.+|||||++.+|+.||||||.... ..+ ++++.++++..+|.+. .|+.++ +|||
T Consensus 1384 ~~I~iVpQdp~LF~gTIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDGTVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred hcceEECCCCccccccHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence 6799999999999889999995321 122 2467888888888654 345554 3676
Q ss_pred --------CC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HC-PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~-P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+ |+||+||||||+||+++.+.|.+.|++. ..++|+|+ +|..+.+ ..||+|++|+ +|+++..|+++
T Consensus 1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~--~~~~TvI~IAHRl~ti-~~~DrIlVLd-~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA--FSAYTVITIAHRLHTV-AQYDKIIVMD-HGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH--CCCCEEEEEeccHHHH-HhCCEEEEEE-CCEEEEECCHH
Confidence 54 8999999999999999999999999986 35789999 9998766 5699999999 99999999984
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=265.13 Aligned_cols=190 Identities=22% Similarity=0.251 Sum_probs=161.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEeccC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+|+++|+++ .|+ ++.+++|+|+.+.+|+.+||+|+||||||||||+|+|.. |++|+|...+ -++||++|+.
T Consensus 2 ~~i~~~~ls~-~~g-----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~ 75 (530)
T COG0488 2 SMITLENLSL-AYG-----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEP 75 (530)
T ss_pred ceEEEeeeEE-eeC-----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCC
Confidence 3799999999 786 789999999999999999999999999999999999997 6999999987 6999999999
Q ss_pred cCCCC-CHHHHHHHHHhhhc-------------CC--------------CCCHHHHHHHHHHHHHHcCCCcccccccCCc
Q 048695 498 AHQTY-SVSESIQFSAALRV-------------GK--------------TVNAMRRHIHVELVLNQLGLLPYSNQLVGSL 549 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~-------------~~--------------~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~l 549 (846)
...+. ||.|.+.-+..-.. +. ....-+.+.+++.+|.-||+.+. ++++++|
T Consensus 76 ~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~L 154 (530)
T COG0488 76 PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSL 154 (530)
T ss_pred CcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhc
Confidence 99988 99998876542100 00 00001123578889999999988 9999999
Q ss_pred cC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 550 HY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 550 Sg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
|| .+|++|||||||++||..+...+-+.|++. .| |+|+ |||...+-+.|++|+-|+ .|++.
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld-~g~l~ 229 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELD-RGKLT 229 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEec-CCcee
Confidence 99 999999999999999999999999999876 46 8888 999999999999999999 77765
Q ss_pred -EecCCC
Q 048695 616 -YFGPRG 621 (846)
Q Consensus 616 -~~G~~~ 621 (846)
|.|.-+
T Consensus 230 ~y~Gny~ 236 (530)
T COG0488 230 PYKGNYS 236 (530)
T ss_pred EecCCHH
Confidence 666543
No 354
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.2e-27 Score=253.22 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=157.7
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------- 487 (846)
..-.++++||++ .|.+ +|++|+||||++.||+.+||+||||+||||+||+|-.... .+|.|.+||
T Consensus 534 ~~G~i~fsnvtF-~Y~p----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 534 TQGKIEFSNVTF-AYDP----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred cCCeEEEEEeEE-ecCC----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence 334799999999 7864 6899999999999999999999999999999999999887 999999999
Q ss_pred ---eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHH--HHHHH-HcCCCcccccccCC----ccC------
Q 048695 488 ---LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHV--ELVLN-QLGLLPYSNQLVGS----LHY------ 551 (846)
Q Consensus 488 ---~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v--~~~l~-~l~L~~~~~~~v~~----lSg------ 551 (846)
+.||.||||..++..|+..|++++.. +-+.+|..+.+ ..+-+ .++..+-.++++|+ |||
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRV 683 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRV 683 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhH
Confidence 57999999999998899999998631 23344443322 22222 36777777888885 676
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|.+++|||.||+||..+.+.|...|.++ +....||++.|.++.+. .+|.|++++ +|++++.|.-+
T Consensus 684 AiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl-ca~RTtIVvAHRLSTiv-nAD~ILvi~-~G~IvErG~He 757 (790)
T KOG0056|consen 684 AIARTILKAPSIILLDEATSALDTNTERAIQAALARL-CANRTTIVVAHRLSTIV-NADLILVIS-NGRIVERGRHE 757 (790)
T ss_pred HHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH-hcCCceEEEeeeehhee-cccEEEEEe-CCeEeecCcHH
Confidence 899999999999999999999999999999 55455666666666664 499999999 99999999763
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=5.7e-26 Score=219.80 Aligned_cols=198 Identities=17% Similarity=0.196 Sum_probs=172.8
Q ss_pred EEEEeceeeeeeccC----CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEG----SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~----~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-------- 487 (846)
.++++|+++ .+... .+....+++.|||++++|+.+|++|.||||||||.|+|+|..+ ++|+|++||
T Consensus 4 LLeV~nLsK-tF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 4 LLEVRNLSK-TFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhh-hhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 578899998 44311 1234568999999999999999999999999999999999985 999999999
Q ss_pred ----eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC--------
Q 048695 488 ----LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------- 551 (846)
+.|-+++||+. +.|. .+.+.|....+ +..+.+.+++.+++.+.|+++||- +.++-++..+|.
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhh--hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 67999999974 5666 88888877654 445677888899999999999984 678888888764
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+|++.||...+||...+.+++++.-+++.+.|.+-|. +|++..+.++.|+|++|+ +|++++.|++.+
T Consensus 161 ARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~-EG~vvE~G~t~~ 236 (267)
T COG4167 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMH-EGEVVERGSTAD 236 (267)
T ss_pred HHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEe-cCceeecCChhh
Confidence 8999999999999999999999999999998888999999 999999999999999999 999999998865
No 356
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.6e-26 Score=274.86 Aligned_cols=184 Identities=19% Similarity=0.241 Sum_probs=157.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ .|+ ...+.++|+|+|+++++|+.+||+|||||||||.+.+|-..+ |++|.|.+||
T Consensus 987 ~I~~~~V~F-~YP--sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSF-AYP--TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEe-eCC--CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 599999999 886 334678999999999999999999999999999999999988 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc-------CCCcccccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQL-------GLLPYSNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~v~----~lSg----- 551 (846)
+++|.|.|+|.||..|+|||+.++ .. +++.+|. .+.++.- +|.+-.|+.+| +|||
T Consensus 1064 ~~i~lVsQEP~LF~~TIrENI~YG--~~---~vs~~eI----i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNGTIRENIAYG--SE---EVSEEEI----IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQR 1134 (1228)
T ss_pred HhcceeccCchhhcccHHHHHhcc--CC---CCCHHHH----HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHH
Confidence 689999999999988999999998 11 2444443 3333332 56666788887 4787
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.||+||||||-||+||+++.+.+-+.|.+. ..|+|.|+ .|.++.+ +.+|.|.+++ +|++++.|+-
T Consensus 1135 IAIARAilRnPkILLLDEATSALDseSErvVQeALd~a--~~gRT~IvIAHRLSTI-qnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1135 IAIARAILRNPKILLLDEATSALDSESERVVQEALDRA--MEGRTTIVIAHRLSTI-QNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred HHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh--hcCCcEEEEecchhhh-hcCCEEEEEE-CCEEEecccH
Confidence 999999999999999999999999999996 56787777 8888776 5699999999 9999999985
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=3.6e-26 Score=270.04 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=141.4
Q ss_pred ceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEE-----------EcC------
Q 048695 426 GLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLN-----------GNV------ 487 (846)
Q Consensus 426 ~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~-----------~~G------ 487 (846)
++++ +|++ +..+|++++ .+++||+++|+||||||||||||+|+|++ |.+|+|. ++|
T Consensus 78 ~~~~-~yg~----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVH-RYGV----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceE-EecC----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 3666 6751 346999999 99999999999999999999999999997 5999997 877
Q ss_pred --------eEEEEEeccC----cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----
Q 048695 488 --------LLLCYVEKLD----AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~----~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---- 551 (846)
..+++.+|.. .++..||+|++... +.+++++++++.+||.+..|+.+++|||
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQ 219 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1256666643 33323999998631 1235789999999999999999999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+|++|+|||||++||+.++..+.+.|+++ ++ |+|||+ +|+++++..++|++++|+ +|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l-~~-g~tvIivsHd~~~l~~~~D~v~vl~-~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL-AE-GKYVLVVEHDLAVLDYLADNVHIAY-GE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HC-CCEEEEEeCCHHHHHHhCCEEEEEe-CC
Confidence 899999999999999999999999999999 66 999999 999999999999999998 63
No 358
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=7.9e-26 Score=217.44 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=165.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~ 488 (846)
+++++||..+ .-|-..|+.+..||+.-++|||||||||||-.++|+.|-+|+|.++| |
T Consensus 3 l~qln~v~~~----------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 3 LMQLNDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred eeeecccccc----------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHH
Confidence 6788888872 23678999999999999999999999999999999999999999999 5
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------------
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------------- 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------------- 551 (846)
.-+|..|+..-... -|...|.. ++ +.+++...++++.+.++|++...+.+..|||
T Consensus 73 hRAYLsQqq~p~f~mpV~~YL~L----~q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 73 HRAYLSQQQTPPFAMPVWHYLTL----HQ----PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHHHHhhccCCcchhhhhhhhhh----cC----chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 67888887544333 78877764 33 4467777899999999999999999999998
Q ss_pred --CCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--Ch
Q 048695 552 --HCP--SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--NH 624 (846)
Q Consensus 552 --~~P--~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~~ 624 (846)
.|| ++|++|||.++||...+..+-++|.++ +.+|.+||+ .||++...+.+|++++|+ .|++...|..++ ..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~-c~~G~~vims~HDLNhTLrhA~~~wLL~-rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL-CQQGLAIVMSSHDLNHTLRHAHRAWLLK-RGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHH-HhCCcEEEEeccchhhHHHHHHHHHHHh-cCeEEeecchhhhcCh
Confidence 566 589999999999999999999999999 789999999 999999999999999999 999999999876 34
Q ss_pred HHHHHHHhh
Q 048695 625 DIILDYFLL 633 (846)
Q Consensus 625 ~~l~~~f~~ 633 (846)
+-+...|+-
T Consensus 223 ~vL~q~fg~ 231 (248)
T COG4138 223 PVLAQAYGM 231 (248)
T ss_pred HHHHHHhcc
Confidence 445555554
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=5.5e-25 Score=284.44 Aligned_cols=185 Identities=16% Similarity=0.208 Sum_probs=150.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
.++++|+++ .|+. +.++++|+|+|+++++||.++|+||||||||||+++|.|.++ .+|.+..-.+.++||+|++.+
T Consensus 614 ~I~~~~vsF-~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 614 AISIKNGYF-SWDS--KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI 690 (1495)
T ss_pred cEEEEeeEE-EcCC--CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccc
Confidence 589999999 7752 124679999999999999999999999999999999999985 777654333689999999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC-------------CCCc
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY-------------HCPS 555 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg-------------~~P~ 555 (846)
++.|++|||.|+.. .+ +++.+++++..+|.+. .++.+|+ ||| .+|+
T Consensus 691 f~gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 691 FNATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred ccccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 87799999998631 11 2456777777777543 2455554 777 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNI-LSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|++||||||+||+++++++++. ++.. ..|+|+|+ ||..+. .+.+|+|++|+ +|+++..|+.++
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~--l~~kT~IlvTH~~~~-l~~aD~Ii~L~-~G~i~~~Gt~~e 825 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDE--LKGKTRVLVTNQLHF-LPLMDRIILVS-EGMIKEEGTFAE 825 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhh--hcCCEEEEEECChhh-HHhCCEEEEEe-CCEEEEecCHHH
Confidence 9999999999999999998765 5554 36789988 988865 46799999999 999999998643
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=7.3e-25 Score=283.73 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=148.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
.++++|+++ .|++ +++++|+|+|+++++||+++|+|||||||||||++|+|.++ .+|+|.++| .+|||+|++.+
T Consensus 636 ~i~~~~~~~-~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l 710 (1522)
T TIGR00957 636 SITVHNATF-TWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWI 710 (1522)
T ss_pred cEEEEEeEE-EcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccc
Confidence 599999999 7752 13579999999999999999999999999999999999985 999999997 69999999887
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-----------cccccccCCccC-------------CCCc
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-----------PYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~v~~lSg-------------~~P~ 555 (846)
++.||+||+.|+.. .+++ +.+++++..++. ...+....+||| .+|+
T Consensus 711 ~~~Ti~eNI~~g~~------~~~~----~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 711 QNDSLRENILFGKA------LNEK----YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred cCCcHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 65599999998632 1121 222333333322 123344566887 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQ-IRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~-~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+++||||||+||+.+++.+++.+.+.. ...|+|+|+ ||+.+.+.. +|++++|+ +|+++..|+.++
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~-~G~i~~~g~~~~ 847 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS-GGKISEMGSYQE 847 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec-CCeEEeeCCHHH
Confidence 999999999999999999999987531 235789999 999987755 99999999 999999998743
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.9e-25 Score=216.60 Aligned_cols=141 Identities=26% Similarity=0.378 Sum_probs=115.3
Q ss_pred EeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------eEE
Q 048695 424 FEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------LLL 490 (846)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~~i 490 (846)
++|+++ .|. ++.+++++|+++++|++++|+|+||||||||+++|+|.++ .+|+|.++| +.+
T Consensus 2 ~~~~~~-~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSF-RYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEE-EeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 578888 664 3579999999999999999999999999999999999986 999999998 236
Q ss_pred EEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH-HHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHH
Q 048695 491 CYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH-IHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 491 gyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~-~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~ 569 (846)
+|++| + +..+++ -.+-..+. .+|++++|||||+|||..
T Consensus 76 ~~~~q------------------l------S~G~~~r~~l~~~l~-----------------~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 76 GYVPQ------------------L------SGGQRQRVALARALL-----------------LNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred EEEee------------------C------CHHHHHHHHHHHHHh-----------------cCCCEEEEeCCCcCCCHH
Confidence 77777 0 111111 01111111 579999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
++..+.+.++++ ++.++|+++ ||+.+++...||++++++ +|+
T Consensus 115 ~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~~~d~i~~l~-~g~ 157 (157)
T cd00267 115 SRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLK-DGK 157 (157)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEEe-CcC
Confidence 999999999998 555889999 999999999999999999 764
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=7.3e-25 Score=283.59 Aligned_cols=184 Identities=14% Similarity=0.204 Sum_probs=152.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-cc-ceEEEcCeEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FT-GSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~-G~I~~~G~~igyv~Q~~~ 498 (846)
.++++|+++ .|+. ..++.+|+|+|+++++||+++|+||||||||||+++|.|.++ .+ |+|.+. +.++||+|++.
T Consensus 614 ~I~~~nvsf-~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-~~Iayv~Q~p~ 689 (1622)
T PLN03130 614 AISIKNGYF-SWDS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-GTVAYVPQVSW 689 (1622)
T ss_pred ceEEEeeEE-EccC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-CeEEEEcCccc
Confidence 589999999 7752 124679999999999999999999999999999999999985 88 999987 57999999999
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCC----ccC-------------CCC
Q 048695 499 HQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLVGS----LHY-------------HCP 554 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v~~----lSg-------------~~P 554 (846)
++..||||||.|+.. . .+++.+++++..+|.+.. ++.+|+ ||| .+|
T Consensus 690 LfngTIreNI~fg~~------~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 690 IFNATVRDNILFGSP------F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred cCCCCHHHHHhCCCc------c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 987899999998632 1 134677788888876432 455553 777 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILN-ILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|++||||||+||+++.+++++ .++.. ..|+|+|+ ||..+. .+.+|+|++|+ +|+++..|+.++
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~--l~~kTvIlVTH~l~~-l~~aD~Ii~L~-~G~i~e~Gt~~e 825 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDE--LRGKTRVLVTNQLHF-LSQVDRIILVH-EGMIKEEGTYEE 825 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHH--hcCCEEEEEECCHhH-HHhCCEEEEEe-CCEEEEeCCHHH
Confidence 9999999999999999998875 56655 35789999 988865 56799999999 999999998743
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=2.4e-24 Score=258.94 Aligned_cols=184 Identities=16% Similarity=0.131 Sum_probs=141.7
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc----cccceEEEcCeEEEEEe
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI----PFTGSLNGNVLLLCYVE 494 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~----~~~G~I~~~G~~igyv~ 494 (846)
..+|+++|+++ .|+ ++.+|+|+|+++++|+.+||+|||||||||||++|+|+. |.+|+ ++|++
T Consensus 175 ~~~I~i~nls~-~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~-------I~~~~ 241 (718)
T PLN03073 175 IKDIHMENFSI-SVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ-------ILHVE 241 (718)
T ss_pred ceeEEEceEEE-EeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE-------EEEEe
Confidence 45799999999 786 467999999999999999999999999999999999964 34454 46778
Q ss_pred ccCcCCCC-CHHHHHH---------------HHHhh---hc-----------CCCCCHHH-------------------H
Q 048695 495 KLDAHQTY-SVSESIQ---------------FSAAL---RV-----------GKTVNAMR-------------------R 525 (846)
Q Consensus 495 Q~~~~~~~-TV~E~l~---------------f~a~l---r~-----------~~~~~~~~-------------------~ 525 (846)
|+... .. |+.|.+. +.... .. ..+.++++ .
T Consensus 242 Q~~~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVVG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 86432 33 6544321 11100 00 00112221 2
Q ss_pred HHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 526 HIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 526 ~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
.++++++|+.+|+. +..++++++||| .+|++|||||||++||+.++..+.+.|+++ |.|||+
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tvii 396 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIV 396 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEE
Confidence 34566677778885 557889999998 899999999999999999999999999886 578888
Q ss_pred -ecChhhHHhhcCEEEEEccCCEEE-EecCCC
Q 048695 592 -NTPYARTVPFFDLALILTKEGHQA-YFGPRG 621 (846)
Q Consensus 592 -~h~~~~i~~~~D~vllL~~~G~~v-~~G~~~ 621 (846)
+|+.+.+.+.||++++|+ +|++. |.|+.+
T Consensus 397 vsHd~~~l~~~~d~i~~l~-~g~i~~~~g~~~ 427 (718)
T PLN03073 397 VSHAREFLNTVVTDILHLH-GQKLVTYKGDYD 427 (718)
T ss_pred EECCHHHHHHhCCEEEEEE-CCEEEEeCCCHH
Confidence 999999999999999999 99996 667653
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.3e-24 Score=257.46 Aligned_cols=229 Identities=21% Similarity=0.288 Sum_probs=196.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhccccchhhHHHHHH----------------------------------HHHHH-HHHHH
Q 048695 95 VQTWWKSTKILVRRQIKIAKRLHQILPHSSTLCLQ----------------------------------QESSN-HVNLT 139 (846)
Q Consensus 95 ~~s~~~q~~~l~~Rq~~l~~rd~~~~~~~~~~~~~----------------------------------~~~~~-~l~~~ 139 (846)
..+||.|++.+++|.++.++||+.....+.+.... ..+.. .++.+
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 77999999999999999999999655322111110 01111 57788
Q ss_pred hhccceeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHH
Q 048695 140 LHDALESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLV 219 (846)
Q Consensus 140 ~~~r~i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~ 219 (846)
..+|++|.||+ ..+.|+.++|++|++++++|+.++.+++|++|+|||+|++++. .+|+.|.+ ++++.
T Consensus 413 ~~e~~~f~rE~----~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~--~~f~~~~l-------~~~~~ 479 (613)
T KOG0061|consen 413 PQERPIFLRET----SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGL--SRFLYFLL-------IILLS 479 (613)
T ss_pred HHHHHHHHHHH----hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcch--HHHHHHHH-------HHHHH
Confidence 99999999999 9999999999999999999999999999999999999998875 78888888 99999
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcc
Q 048695 220 AYFGSSVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTN 299 (846)
Q Consensus 220 ~~~~~~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~ 299 (846)
.+++.++..+++++.||...|..++..+++.+++++||+++.+.+|.||+|++|+|+..|+++++++|||.+. .+.|..
T Consensus 480 ~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~-~~~~~~ 558 (613)
T KOG0061|consen 480 SLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGG-SSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999751 223321
Q ss_pred -------cccccc---cccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 048695 300 -------FLSVTN---SQQIAKRPWLPYAILLGWTVLANFLALLGRRN 337 (846)
Q Consensus 300 -------~~g~~~---~~~~~~~~w~~~~il~~~~~~~~~~~~~~~~~ 337 (846)
..+... .++...+.|.++.++++++++|.+++++++++
T Consensus 559 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~ 606 (613)
T KOG0061|consen 559 SGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRF 606 (613)
T ss_pred CcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 36678899999999999999999999999975
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.1e-25 Score=215.45 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=134.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeE----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLL---------- 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~---------- 489 (846)
+++.+||++ ..+ ++.++.++||++.+||.+-|.||||||||||||+|+|+. |.+|+|.++|..
T Consensus 2 ~L~a~~L~~-~R~-----e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLSC-ERG-----ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhhh-ccC-----cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 467888988 433 789999999999999999999999999999999999997 599999999822
Q ss_pred -EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 490 -LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 490 -igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
+-|+--++.+=+. ||+|||.|....... ...+.+.+.++.+||....|.+++.||. ..+
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 3344334444566 999999998776532 1235688999999999999999999986 888
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChh
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPYA 596 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~ 596 (846)
++.+||||+++||......+-.++..- ..+|-.||. |||+.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H-~~~GGiVllttHq~l~ 192 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAH-AAQGGIVLLTTHQPLP 192 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHH-hcCCCEEEEecCCccC
Confidence 999999999999999999999999987 455555555 66654
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=208.22 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=156.6
Q ss_pred ceEEEEeceeeeeeccC--CCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC--------
Q 048695 419 PVTFVFEGLTFSRYEEG--SNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~--~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-------- 487 (846)
+..+.++|+++ .+.-. .+-..++++|||++++.|||++|-||||+|||||||+|-|-+ |++|+|.+..
T Consensus 2 ~~~l~v~~~~K-tFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 2 PTPLNVSNVSK-TFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV 80 (235)
T ss_pred Cceeeeecchh-heEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhh
Confidence 34688899988 55321 112357999999999999999999999999999999999976 6999999864
Q ss_pred ------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC--
Q 048695 488 ------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY-- 551 (846)
Q Consensus 488 ------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-- 551 (846)
+.+|||.|.-...|. +..|-+.-.+.-+ +++.+..++++.++|.+|++.+. .+-.+.+.||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 569999998877888 7777776665444 78888889999999999999764 4556777887
Q ss_pred -----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 -----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 -----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+=+||+|||||+.||..++..++++|++- +..|.+++= -||-+.-...+||++-+.
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeecc
Confidence 788899999999999999999999999997 788988888 899777777899999887
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=1.6e-24 Score=279.81 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=143.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
.++++|+++ . .+++|+|||+++++||+++|+|||||||||||++|+|..+ .+|+|.++| .++||+|++.+
T Consensus 428 ~~~~~~~s~-~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-~iayv~Q~~~l 498 (1490)
T TIGR01271 428 GLFFSNFSL-Y-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-RISFSPQTSWI 498 (1490)
T ss_pred ccccccccc-c-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEEEEeCCCcc
Confidence 356666665 2 3579999999999999999999999999999999999985 999999998 69999999988
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHH-----HHHHHHHHcCCCc--ccccccCCccC-------------CCCcEEEE
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHI-----HVELVLNQLGLLP--YSNQLVGSLHY-------------HCPSILLL 559 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~--~~~~~v~~lSg-------------~~P~iLlL 559 (846)
++.||+||+.|+... +.+..++ ..++.++.+...+ .......+||| .+|+++||
T Consensus 499 ~~~Ti~eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illL 572 (1490)
T TIGR01271 499 MPGTIKDNIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572 (1490)
T ss_pred CCccHHHHHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 766999999987421 1111111 1122233322111 12334567887 99999999
Q ss_pred eCCCCCCCHHHHHHHHHH-HHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 560 EEPLSGVDTIGTLTILNI-LSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 560 DEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
||||||||+.++..+++. ++++ . +|+|+|+ ||+.+.+. .||++++|+ +|+++..|+.++
T Consensus 573 Dep~saLD~~~~~~i~~~~l~~~-~-~~~tvilvtH~~~~~~-~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 573 DSPFTHLDVVTEKEIFESCLCKL-M-SNKTRILVTSKLEHLK-KADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHH-h-cCCeEEEEeCChHHHH-hCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999999999984 6776 3 4899999 99998875 599999999 999999998754
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=5e-24 Score=223.60 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=123.4
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHH-HHHcC--C-------cc----ccceE------EEcCeEEEEEeccCc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLL-QCLAE--R-------IP----FTGSL------NGNVLLLCYVEKLDA 498 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL-~~LaG--~-------~~----~~G~I------~~~G~~igyv~Q~~~ 498 (846)
+.++|+|||+++++||+++|+||||||||||+ ..|.. . .+ ..|.+ .+.|...++..|++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 56899999999999999999999999999996 33321 0 00 00001 112223344444432
Q ss_pred --CCCC-CHH---HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCC--cE
Q 048695 499 --HQTY-SVS---ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCP--SI 556 (846)
Q Consensus 499 --~~~~-TV~---E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P--~i 556 (846)
..+. +|. |...+...+. ..++..++ .+.++.++|.+ ..++++.+||+ .+| ++
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~l 160 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVL 160 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCE
Confidence 2344 654 3333222111 11222233 56899999987 58999999998 676 69
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEec
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFG 618 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G 618 (846)
|+|||||+|||+.++..+.+.|+++ ++.|.|+|+ ||+.+++ +.||++++| + +|+++++|
T Consensus 161 lllDEPt~gLD~~~~~~l~~~l~~~-~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~-~G~iv~~g 226 (226)
T cd03270 161 YVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVH-GGEIVAQG 226 (226)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHH-HhCCCEEEEEEeCHHHH-HhCCEEEEeCCCcccc-CCEEEecC
Confidence 9999999999999999999999999 667999999 9999886 689999999 8 99999876
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=3.7e-24 Score=276.60 Aligned_cols=179 Identities=21% Similarity=0.213 Sum_probs=142.0
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
++.+|+|||+++++||+++|+|||||||||||++|+|..+ .+|+|.++ +.+|||+|++.+++.||+||+.|+.....
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~- 749 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-RSIAYVPQQAWIMNATVRGNILFFDEEDA- 749 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-CeEEEEeCCCccCCCcHHHHHHcCChhhH-
Confidence 4679999999999999999999999999999999999975 99999987 67999999988764599999998531100
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048695 518 KTVNAMRRHIHVELVLNQL--GLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQ 582 (846)
Q Consensus 518 ~~~~~~~~~~~v~~~l~~l--~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~ 582 (846)
....+..+....++.++.+ |+....++...+||| .+|++++||||||+||+.++..+++.+...
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~- 828 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG- 828 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-
Confidence 0000000111234455555 666666777888998 999999999999999999999998754322
Q ss_pred hhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 583 IRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 583 ~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
...|+|+|+ ||+.+.+ +.+|++++|+ +|++++.|+.++
T Consensus 829 ~~~~~TvIlvTH~~~~~-~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 829 ALAGKTRVLATHQVHVV-PRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred hhCCCEEEEEeCCHHHH-HhCCEEEEEE-CCEEEEecCHHH
Confidence 235899999 9999887 5799999999 999999998743
No 370
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.5e-22 Score=228.32 Aligned_cols=193 Identities=18% Similarity=0.232 Sum_probs=167.3
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------- 487 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------- 487 (846)
.++.++++|++. ...++||||++++||+++|-|-=|||+|-|+++|.|..+ .+|+|.+||
T Consensus 260 ~~~~l~v~~l~~----------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 260 GEPVLEVRNLSG----------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CCcEEEEecCCC----------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHH
Confidence 356799999986 126889999999999999999999999999999999876 999999999
Q ss_pred ----eEEEEEecc---CcCCCC-CHHHHHHHHHhhhcC-C-CCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-----
Q 048695 488 ----LLLCYVEKL---DAHQTY-SVSESIQFSAALRVG-K-TVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 ----~~igyv~Q~---~~~~~~-TV~E~l~f~a~lr~~-~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg----- 551 (846)
..++||+.| +.++.. +|+||+.++...+.. . -+++...++.+++..+.|++. .-.+..+++|||
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 369999976 467777 999999988332321 1 255666677899999999996 456799999999
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||.|.|..++.+|.++++++ +++|++||+ |-+++|+..+||||++|+ +|+++..=+.++
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l-A~~G~ail~iSSElpEll~~~DRIlVm~-~Gri~~e~~~~~ 487 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL-AAEGKAILMISSELPELLGLSDRILVMR-EGRIVGELDREE 487 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH-HHCCCEEEEEeCChHHHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999 788999999 999999999999999999 999987655543
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=7.8e-23 Score=236.17 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=154.1
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEec
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEK 495 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q 495 (846)
.+..++++|+++ .|++ ++.+++++|+.+++|+.+||+||||+|||||||+|+|.. |.+|+|.+.- -++||..|
T Consensus 318 g~~vl~~~~~~~-~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 318 GKLVLEFENVSK-GYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred CCeeEEEecccc-ccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence 356899999999 7752 378999999999999999999999999999999999987 5899999865 78999999
Q ss_pred cC-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEE
Q 048695 496 LD-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLL 559 (846)
Q Consensus 496 ~~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlL 559 (846)
+. .+.+. |+.|.+.-... +.....+...|..+++.. ...++++.||| .+|.+|+|
T Consensus 393 ~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiL 463 (530)
T COG0488 393 HRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLL 463 (530)
T ss_pred hhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEE
Confidence 86 44577 99999874321 111467889999999974 56899999999 99999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe-cC
Q 048695 560 EEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF-GP 619 (846)
Q Consensus 560 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~-G~ 619 (846)
||||+.||..+...+.+.|.+. .-|||+ |||...+...+++++.+. + ++..+ |.
T Consensus 464 DEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~-~-~~~~~~g~ 519 (530)
T COG0488 464 DEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVE-D-KVEEFEGG 519 (530)
T ss_pred cCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEc-C-ceeEcCCC
Confidence 9999999999999999999887 346777 999999999999999999 6 55433 54
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=8.8e-23 Score=217.14 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=133.0
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHc--------CCc---c-----ccc------eEEEcC----------
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLA--------ERI---P-----FTG------SLNGNV---------- 487 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~La--------G~~---~-----~~G------~I~~~G---------- 487 (846)
..-|+|||..++.|++++|.|+||||||||++.+. +.. | ..| -|.++.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998551 110 1 111 244444
Q ss_pred ----------------------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC
Q 048695 488 ----------------------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGL 538 (846)
Q Consensus 488 ----------------------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L 538 (846)
..+.|..++...... ||.|++.|...++ ..+++.++|+.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 013344444444456 8999988876542 12457789999999
Q ss_pred Cc-ccccccCCccC-------------C---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHh
Q 048695 539 LP-YSNQLVGSLHY-------------H---CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVP 600 (846)
Q Consensus 539 ~~-~~~~~v~~lSg-------------~---~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~ 600 (846)
.+ ..++.+.+||+ . +|++++|||||+|||+..+..+++.|+++ ++.|.|||+ +|+.+++ +
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l-~~~g~tvIiitH~~~~i-~ 236 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL-VDKGNTVVVIEHNLDVI-K 236 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHH-H
Confidence 88 57999999998 3 48999999999999999999999999999 677999999 9999887 4
Q ss_pred hcCEEEEE------ccCCEEEEecCC
Q 048695 601 FFDLALIL------TKEGHQAYFGPR 620 (846)
Q Consensus 601 ~~D~vllL------~~~G~~v~~G~~ 620 (846)
.+|+++.| + +|++++.|++
T Consensus 237 ~aD~ii~Lgp~~g~~-~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDG-GGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCC-CCEEEEeCCC
Confidence 79999999 6 9999999874
No 373
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-23 Score=225.92 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=151.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
-.+.+.|+++ .|.+ .+++|+++|+.+++|+.+|++||||+||||++++|-..+. .+|.|.+||
T Consensus 261 g~v~F~~V~F-~y~~----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 261 GAVAFINVSF-AYDP----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred ceEEEEEEEe-eccc----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 3589999999 7763 7899999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHH-----HHHHHcCCCcccccccCC----ccC------
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVE-----LVLNQLGLLPYSNQLVGS----LHY------ 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~-----~~l~~l~L~~~~~~~v~~----lSg------ 551 (846)
+.||.||||..++..|...|+.++.. ..+.+|+.+.++ +.++ .+.+-.++.+|+ +||
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheeeccCchHHHH
Confidence 67999999999887799999998632 233444332222 2222 244556677775 566
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+||++||.||+||..+.++|...|+++ .. |+|-++ -|.++.+.. +|.|++|+ +|++++.|.-
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~-~~-~rttlviahrlsti~~-adeiivl~-~g~i~erg~h 481 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREV-SA-GRTTLVIAHRLSTIID-ADEIIVLD-NGRIVERGTH 481 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHH-hC-CCeEEEEeehhhhccC-CceEEEee-CCEEEecCcH
Confidence 999999999999999999999999999998 54 555555 777777654 99999999 9999999975
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=4.5e-23 Score=254.76 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=158.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++|++. +|.+ +...+|+|||++|+|||-+||+|..|||||||+++|-.+.. .+|+|.+||
T Consensus 1138 ~I~f~~~~~-RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSL-RYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred eEEEEEeEE-EeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 599999999 8863 24689999999999999999999999999999999999975 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCc-----------cC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSL-----------HY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~l-----------Sg----- 551 (846)
++++.+|||+.+|..|||+||.=.. +-.++++-++||+.+|.+.-.+.+++| |.
T Consensus 1214 srlsIIPQdPvLFsGTvR~NLDPf~----------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFD----------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred hcCeeeCCCCceecCccccccCccc----------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 6899999999999999999996221 112346778888888876655555544 21
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+.+||+|||.|++.|+++-..|-+.||+ +=.++||+. -|..+.+.. +|||++|+ +|+++++|+|.
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~--~F~dcTVltIAHRl~TVmd-~DrVlVld-~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIRE--EFKDCTVLTIAHRLNTVMD-SDRVLVLD-AGRVVEFDSPA 1358 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH--HhcCCeEEEEeeccchhhh-cCeEEEee-CCeEeecCChH
Confidence 89999999999999999999999999998 456899999 999988876 99999999 99999999994
No 375
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=1.1e-21 Score=242.60 Aligned_cols=186 Identities=21% Similarity=0.295 Sum_probs=155.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCc
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~ 498 (846)
..++++|.++ ...+ .+..+.|+|||+++++|+++||+||-|||||+||.+|.|.++ .+|++.++|. ++||+|++.
T Consensus 517 ~~i~i~~~sf-sW~~--~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-iaYv~Q~pW 592 (1381)
T KOG0054|consen 517 NAIEIKNGSF-SWDS--ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-VAYVPQQPW 592 (1381)
T ss_pred ceEEEeeeeE-ecCC--CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-EEEeccccH
Confidence 3588999998 5653 234559999999999999999999999999999999999987 9999999986 999999999
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cC----CccC-------------CCC
Q 048695 499 HQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-------VG----SLHY-------------HCP 554 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------v~----~lSg-------------~~P 554 (846)
++..|||||+.|+... .+++-+++++.+.|++..+.. +| +||| ++.
T Consensus 593 I~ngTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred hhCCcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 9888999999997532 235678888888887644433 33 3676 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|.|||.|.|++|++...+|.+..-+- .-+++|+|+ ||.. +..+.+|.|++|+ +|++...|+.++
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql-~~L~~ad~Iivl~-~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQL-QFLPHADQIIVLK-DGKIVESGTYEE 728 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCch-hhhhhCCEEEEec-CCeEecccCHHH
Confidence 999999999999999999998754443 456899999 9965 4557799999999 999999999854
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=7.7e-22 Score=202.55 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=115.1
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c---------cceEEEcC---------eEEEEEeccCcCCCCCH
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F---------TGSLNGNV---------LLLCYVEKLDAHQTYSV 504 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~---------~G~I~~~G---------~~igyv~Q~~~~~~~TV 504 (846)
+++++++++| +++|+||||||||||+++|+|+.+ . .|++.++| +.+|||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999998863 2 34677666 5799999987654
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------C-----CCcEEEEeCCCCCCC
Q 048695 505 SESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------H-----CPSILLLEEPLSGVD 567 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------~-----~P~iLlLDEPTsgLD 567 (846)
|. .. ..++++++++. .+..++.+++||+ . +|++++|||||+|||
T Consensus 89 -----~~--~~---------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 -----YS--II---------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred -----ee--EE---------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 11 00 12356777777 5667888999997 1 458999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 568 TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 568 ~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
+..+..+++.|+++ ++ +.|||+ ||+.+.+ +.+|+++.+.+.+
T Consensus 150 ~~~~~~l~~~l~~~-~~-~~tiIiitH~~~~~-~~~d~v~~~~~~~ 192 (197)
T cd03278 150 DANVERFARLLKEF-SK-ETQFIVITHRKGTM-EAADRLYGVTMQE 192 (197)
T ss_pred HHHHHHHHHHHHHh-cc-CCEEEEEECCHHHH-hhcceEEEEEecc
Confidence 99999999999998 55 688888 9999875 6899999998544
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.86 E-value=7.4e-22 Score=190.35 Aligned_cols=106 Identities=31% Similarity=0.395 Sum_probs=96.6
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------eEEEEEeccCcCCCC-CHHHHH
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------LLLCYVEKLDAHQTY-SVSESI 508 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~~igyv~Q~~~~~~~-TV~E~l 508 (846)
|+|||+++++||+++|+|+||||||||+++|+|..+ .+|+|.++| +.++|++|++.+++. ||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999985 999999998 579999999989998 99999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc----CCccC-------------CCCcEEEEeCCCC
Q 048695 509 QFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLV----GSLHY-------------HCPSILLLEEPLS 564 (846)
Q Consensus 509 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v----~~lSg-------------~~P~iLlLDEPTs 564 (846)
...++++++++.+++.+..++.+ ++||+ .+|++++|||||+
T Consensus 80 ---------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ---------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ---------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ---------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22346889999999988877777 88987 9999999999996
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.9e-20 Score=198.69 Aligned_cols=161 Identities=7% Similarity=0.005 Sum_probs=116.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC----------------c-cccc--------eEEEcC------
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER----------------I-PFTG--------SLNGNV------ 487 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~----------------~-~~~G--------~I~~~G------ 487 (846)
++.++++++ |++++|+|||||||||||++|++. . +.+| +|.+++
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 567888887 789999999999999999999833 2 1344 555544
Q ss_pred ---------eEEEEEeccCcCCCC--CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----
Q 048695 488 ---------LLLCYVEKLDAHQTY--SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----- 551 (846)
Q Consensus 488 ---------~~igyv~Q~~~~~~~--TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----- 551 (846)
|.+||++|+..+.+. |..|...+...+....... .......++.+.+++.+..++.+.++|+
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~--~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r 166 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNP--YYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSL 166 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCC--cEEEEcCchHHhhhccccccccccccCHHHHHH
Confidence 458888887777764 7766666554432211000 0000012344446666667888999997
Q ss_pred --------C----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 --------H----CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 --------~----~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
. +|+++++||||+|||+.++..+++.|+++ ++ +.+||+ ||.. ++.+.||++++|.
T Consensus 167 ~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~-~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 167 VALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SD-GAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCH-HHHhhCCEEEEEE
Confidence 2 48999999999999999999999999998 55 788888 7774 6789999999997
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=197.90 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=171.3
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCe---------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVL--------- 488 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~--------- 488 (846)
+..|+++||+. .-. .+...+++|||++++||+++|.|-.|-|-+.|+.+|+|+. +.+|+|.++|+
T Consensus 255 ~~vL~V~~L~v-~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSV-KDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEe-ecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 56899999998 321 1357899999999999999999999999999999999997 47799999992
Q ss_pred -----EEEEEeccC---cCCCC-CHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC---
Q 048695 489 -----LLCYVEKLD---AHQTY-SVSESIQFSAALRVG----KTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY--- 551 (846)
Q Consensus 489 -----~igyv~Q~~---~~~~~-TV~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg--- 551 (846)
.+||||.|. .+.+. |+.||+.+...-+-| .-....+.++..++++++++.. .-.+.++++|||
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNq 409 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ 409 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcce
Confidence 579999875 45667 999999987653211 1356678888999999999997 445677899998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|++.+||.|||..+.+.|.+.|.+. ++.|++|++ +.|++|+++++|||.+|. +|+++...++
T Consensus 410 QK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~-r~~G~AVLLiS~dLDEil~lsDrIaVi~-~Gri~~~~~~ 487 (501)
T COG3845 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL-RDAGKAVLLISEDLDEILELSDRIAVIY-EGRIVGIVPP 487 (501)
T ss_pred ehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH-HhcCCEEEEEehhHHHHHHhhheeeeee-CCceeccccc
Confidence 899999999999999999999999999999 899999999 999999999999999999 9999999888
Q ss_pred CC
Q 048695 621 GS 622 (846)
Q Consensus 621 ~~ 622 (846)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 75
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=8.8e-22 Score=204.39 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=125.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
.++++|... |+ ++.+++++++ ++++|+||||||||||+++|.-..- .... ..++++++++|+...
T Consensus 5 ~l~l~nfk~--~~-----~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~--~~~~~i~~~~~~~~~ 70 (212)
T cd03274 5 KLVLENFKS--YA-----GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASK--MRQKKLSDLIHNSAG 70 (212)
T ss_pred EEEEECccc--CC-----CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHH--hhhhhHHHHhcCCCC
Confidence 366777653 44 5789999987 8999999999999999999972210 0000 011468999998888
Q ss_pred CCC-CHHHHHHHHHhhhc-----CCCCCHHHHHH--HHHHHHHHcCCCcccccccCCccC-------------C----CC
Q 048695 500 QTY-SVSESIQFSAALRV-----GKTVNAMRRHI--HVELVLNQLGLLPYSNQLVGSLHY-------------H----CP 554 (846)
Q Consensus 500 ~~~-TV~E~l~f~a~lr~-----~~~~~~~~~~~--~v~~~l~~l~L~~~~~~~v~~lSg-------------~----~P 554 (846)
.+. |++|.+.+...... -.+...++... ..+++++.++|.+..+++++.+|+ . +|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 71 HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 888 88888776554310 00111111111 136777888999888999999987 2 37
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK 610 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~ 610 (846)
++++|||||+|||+.++..+.+.++++ ++. .++|+ +|+ .++.+.|||+++|.+
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~-~~~-~~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKER-TKN-AQFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHH-cCC-CEEEEEECc-HHHHHhCCEEEEEEe
Confidence 999999999999999999999999998 554 55555 777 477899999999984
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.81 E-value=6.7e-20 Score=190.72 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=120.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEe-CCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAK-PQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~-~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~~G---------- 487 (846)
.++++|..- |. ++ ++|+|... +|++++|+|||||||||||++|++.+ +..+....+.
T Consensus 5 ~i~l~nf~~--y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFGP--FR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCcC--cC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCc
Confidence 477888763 32 12 55666543 58999999999999999999999643 2223333211
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C-
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H- 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~- 552 (846)
..+++++|++.... ++.... +.+.++..+.+ .++..++.+..++.++++|+ .
T Consensus 75 ~~~v~~~f~~~~~~~-~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 75 TAEVSFTFQLGGKKY-RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred cEEEEEEEEECCeEE-EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 57899999863211 222111 23333322211 24555677777888888887 2
Q ss_pred ---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 553 ---------CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 553 ---------~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
+|++++|||||+|||+.++..+.+.|+++ ++.|.|||+ ||+.+.+...+|++++++ +|
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~-~~~~~tii~itH~~~~~~~~~~~i~~~~-~~ 209 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI-RTENRMVGVISHVEELKERIPQRLEVIK-TP 209 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEECchHHHHhhCcEEEEEe-cC
Confidence 57899999999999999999999999999 666899999 999999999999999999 65
No 382
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=2.5e-20 Score=198.78 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=118.6
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC---------------eEEEEEeccC---------cCCCC-CHH
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV---------------LLLCYVEKLD---------AHQTY-SVS 505 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G---------------~~igyv~Q~~---------~~~~~-TV~ 505 (846)
..+++|+||||||||||+++|++.+. ..|++...| ..+++++|++ .+.|. ||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 44999999999999999999999874 345665543 3789999984 24567 998
Q ss_pred HHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHcCCC--------------------cccccccCCccC-------------
Q 048695 506 ESIQFSAALRVGKTV-NAMRRHIHVELVLNQLGLL--------------------PYSNQLVGSLHY------------- 551 (846)
Q Consensus 506 E~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~--------------------~~~~~~v~~lSg------------- 551 (846)
+++..+...+. .. .++...++++++|+.+||. +..++++.++|+
T Consensus 105 r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88865432211 01 1233457899999999996 455688899987
Q ss_pred C----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 H----CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~----~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
. +|+++++||||+|||+..+..+.+.|+++ ++ |.++|+ ||. .++.+.+|+++-++
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~-g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FK-GSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cC-CCEEEEEECC-HHHHHhCCEEEEEE
Confidence 1 56999999999999999999999999998 54 788888 999 67778899998876
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=4.9e-19 Score=224.66 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=142.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHH---------HHcCCcc-------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQ---------CLAERIP------------- 478 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~---------~LaG~~~------------- 478 (846)
.++++|++. ..|+|+|+++++||+++|.|+||||||||++ .|.|..+
T Consensus 600 ~L~l~~~~~-----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKATK-----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEecccc-----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 467776653 3699999999999999999999999999999 4444311
Q ss_pred ------------ccceEE-----------------------------EcC--------eEEEE----Eecc---------
Q 048695 479 ------------FTGSLN-----------------------------GNV--------LLLCY----VEKL--------- 496 (846)
Q Consensus 479 ------------~~G~I~-----------------------------~~G--------~~igy----v~Q~--------- 496 (846)
-++.+. +|. +..|+ .+.+
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 112344 221 22332 1111
Q ss_pred --------CcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC------------C--
Q 048695 497 --------DAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY------------H-- 552 (846)
Q Consensus 497 --------~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg------------~-- 552 (846)
...+.. ||.|+|.++..-......+.++..+++ ++|+.+||.+. .++.+.+||+ .
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~ 827 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAP 827 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhc
Confidence 124556 999999987653321122344555667 58899999987 7999999998 2
Q ss_pred --CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-----CCEEEEecCCCC
Q 048695 553 --CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-----EGHQAYFGPRGS 622 (846)
Q Consensus 553 --~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-----~G~~v~~G~~~~ 622 (846)
+|++++|||||+|||+.++..+++.|+++ ++.|.|||+ +|+++++ +.+|++++|.+ +|+++..|++++
T Consensus 828 ~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L-~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 828 SKKPTLYVLDEPTTGLHTHDIKALIYVLQSL-THQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 89999999999999999999999999999 677999999 9999988 89999999942 689999998854
No 384
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.80 E-value=2.2e-19 Score=185.48 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=107.9
Q ss_pred eeeEEeCCeEEEEEcCCCCChhhHHHHH----cCCcc-ccceEEEcC---------eEEEEEeccC-----cCCCC-CHH
Q 048695 446 VTCYAKPQNMFALLGGSRTSKVTLLQCL----AERIP-FTGSLNGNV---------LLLCYVEKLD-----AHQTY-SVS 505 (846)
Q Consensus 446 vs~~v~~Ge~~al~GpsGaGKSTLL~~L----aG~~~-~~G~I~~~G---------~~igyv~Q~~-----~~~~~-TV~ 505 (846)
.++++.+| +++|+|||||||||||++| .|..+ .+|.+..+. ..+++++|++ ..... |+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34567778 9999999999999999999 48765 556543111 6899999987 33344 788
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------------CCCcEEEEeCCCCCC
Q 048695 506 ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------------HCPSILLLEEPLSGV 566 (846)
Q Consensus 506 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------------~~P~iLlLDEPTsgL 566 (846)
|++.+. +.. ++++.+ ++.++++|+ .+|+++++||||++|
T Consensus 95 ~~~~~~---------~~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 95 ENVIFC---------HQG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hceeee---------chH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 888652 111 222233 455555554 589999999999999
Q ss_pred CHHHHH-HHHHHHHHHHhhc-CcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 567 DTIGTL-TILNILSLCQIRS-GHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 567 D~~~~~-~i~~~l~~l~~~~-g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
|+..+. .+.++|+++ ++. |.+||+ ||+.+.+ ..+|+++.|.++|+
T Consensus 153 D~~~~~~~l~~~l~~~-~~~~~~~iiiitH~~~~~-~~~d~i~~l~~~~~ 200 (204)
T cd03240 153 DEENIEESLAEIIEER-KSQKNFQLIVITHDEELV-DAADHIYRVEKDGR 200 (204)
T ss_pred CHHHHHHHHHHHHHHH-HhccCCEEEEEEecHHHH-hhCCEEEEEeeCCC
Confidence 999999 999999999 554 889999 9998765 67999999986664
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=4.7e-19 Score=175.24 Aligned_cols=199 Identities=14% Similarity=0.105 Sum_probs=153.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-----ccceEEEcC--------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-----FTGSLNGNV-------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-----~~G~I~~~G-------- 487 (846)
.+.++||+. .+. .+.+...++++||+++.+||+-+|+|.||||||-.-|+|+|... +.-...+++
T Consensus 3 LLDIrnL~I-E~~-TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTI-EFK-TSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEE-EEe-cCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 467788888 443 23445689999999999999999999999999999999999865 333444544
Q ss_pred --------eEEEEEeccCc--CCCC-CHHHHHHHHHhhhcCCC--C-CHHHHHHHHHHHHHHcCCCcccc---cccCCcc
Q 048695 488 --------LLLCYVEKLDA--HQTY-SVSESIQFSAALRVGKT--V-NAMRRHIHVELVLNQLGLLPYSN---QLVGSLH 550 (846)
Q Consensus 488 --------~~igyv~Q~~~--~~~~-TV~E~l~f~a~lr~~~~--~-~~~~~~~~v~~~l~~l~L~~~~~---~~v~~lS 550 (846)
+.+++++|++. +.|. +|...|.-....+.-.+ . --.-+++++-++|.++|+.+..| .++.++.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 57899999974 5676 76555432211110000 0 01124557789999999987554 4555553
Q ss_pred C-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE
Q 048695 551 Y-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY 616 (846)
Q Consensus 551 g-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~ 616 (846)
. .+|++|+.||||+.+|+.++.+|.++|.++...+|.||++ +||+..+-+.||++-+|. =|+.+.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY-CGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY-CGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE-eccccc
Confidence 2 8999999999999999999999999999996677899999 999999999999999999 899998
Q ss_pred ecCCCC
Q 048695 617 FGPRGS 622 (846)
Q Consensus 617 ~G~~~~ 622 (846)
.++.++
T Consensus 240 Sa~~e~ 245 (330)
T COG4170 240 SAPSEE 245 (330)
T ss_pred ccchhH
Confidence 888743
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=2.5e-18 Score=210.23 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=91.4
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCC---cEEEEeCCCCC
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCP---SILLLEEPLSG 565 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P---~iLlLDEPTsg 565 (846)
||.|++.|...++ . ..+..+.|+.+||.+ ..++.+.+||+ .+| ++++|||||+|
T Consensus 793 tv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsG 863 (943)
T PRK00349 793 TVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 863 (943)
T ss_pred cHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 7888888865432 1 123467899999987 57999999998 677 99999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
||+..+..+++.|+++ ++.|.|||+ +|+.+++ +.+|+++.| + +|++++.|+++
T Consensus 864 LD~~~~~~L~~~L~~l-~~~G~TVIiitH~~~~i-~~aD~ii~Lgp~~G~~-~G~Iv~~Gt~~ 923 (943)
T PRK00349 864 LHFEDIRKLLEVLHRL-VDKGNTVVVIEHNLDVI-KTADWIIDLGPEGGDG-GGEIVATGTPE 923 (943)
T ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHH-HhCCEEEEecCCcCCC-CCEEEEeCCHH
Confidence 9999999999999999 678999999 9999887 579999999 6 89999999873
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=3.7e-19 Score=197.69 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=147.5
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEEecc
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYVEKL 496 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv~Q~ 496 (846)
++.+.++|+++ .|.+ +-.++++++|-+.+++-+|++||||||||||||++.|.+ |..|.|.-.- ..+++-.|+
T Consensus 387 ~pvi~~~nv~F-~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh 461 (614)
T KOG0927|consen 387 PPVIMVQNVSF-GYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQH 461 (614)
T ss_pred CCeEEEecccc-CCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhh
Confidence 56899999999 7752 237999999999999999999999999999999999987 6889886543 456666665
Q ss_pred C--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEEE
Q 048695 497 D--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILLL 559 (846)
Q Consensus 497 ~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLlL 559 (846)
. .+.-. ++-|++.=.. +.+...+.++.+|.++||+ +..+.++++||+ .+|.+|+|
T Consensus 462 ~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 462 LAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533 (614)
T ss_pred hHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEe
Confidence 3 22223 6666665221 1123456789999999999 567788899997 89999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 560 EEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 560 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
||||+|||..+...+-+.|.+. .| +||+ +||.-.+.+.++++.+...++...+.|+.
T Consensus 534 DEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999886 34 4555 99999999999999999834445677765
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=8.2e-18 Score=205.39 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=88.2
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------C---CCcEEEEeCCCCC
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------H---CPSILLLEEPLSG 565 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~---~P~iLlLDEPTsg 565 (846)
||.|++.|...+. . ..+..++|+.+||.. ..++.+.+||+ . +|++++|||||+|
T Consensus 791 tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 791 TVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred cHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 6666666654332 1 123457889999986 47899999998 2 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPR 620 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~ 620 (846)
||+..+..+++.|+++ .+.|.|||+ +|+.+.+ +.+|+++.| + +|++++.|++
T Consensus 862 LD~~~~~~L~~~L~~l-~~~G~TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~-gG~iv~~G~~ 920 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRL-VDQGNTVVVIEHNLDVI-KTADYIIDLGPEGGDG-GGTIVASGTP 920 (924)
T ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HhCCEEEEecCCccCC-CCEEEEeCCH
Confidence 9999999999999999 677999999 9999887 579999999 6 8999999987
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.76 E-value=1.6e-18 Score=178.13 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=109.3
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr 515 (846)
++.+++|+++.. |++++|+||||||||||||+|+|... ..|. .+. ...+++|.+.+++. |++|++.++...
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~--a~~~~~q~~~l~~~~~~~d~l~~~~s~- 86 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVC--ASSFELPPVKIFTSIRVSDDLRDGISY- 86 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEe--cCccCcccceEEEeccchhccccccCh-
Confidence 356778877665 79999999999999999999998653 3332 111 12467787778888 999999875421
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhhcCcEEEE-ec
Q 048695 516 VGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTIL-NILSLCQIRSGHYCLS-NT 593 (846)
Q Consensus 516 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~-~h 593 (846)
...+. ++++++++.+++ .+|+++++||||+|||+..+..+. .+++++ ++.|.++|+ ||
T Consensus 87 -----~~~e~-~~~~~iL~~~~~-------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l-~~~~~tiiivTH 146 (199)
T cd03283 87 -----FYAEL-RRLKEIVEKAKK-------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFL-KNKNTIGIISTH 146 (199)
T ss_pred -----HHHHH-HHHHHHHHhccC-------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHH-HHCCCEEEEEcC
Confidence 12333 578899998875 579999999999999999998875 478888 667899999 99
Q ss_pred ChhhHHhh--cCEEEEE
Q 048695 594 PYARTVPF--FDLALIL 608 (846)
Q Consensus 594 ~~~~i~~~--~D~vllL 608 (846)
+.+++... .+++-.+
T Consensus 147 ~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 147 DLELADLLDLDSAVRNY 163 (199)
T ss_pred cHHHHHhhhcCCCeEEE
Confidence 99887665 4455443
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.76 E-value=2.9e-18 Score=197.31 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=142.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc-CeEEEEEecc
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN-VLLLCYVEKL 496 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~-G~~igyv~Q~ 496 (846)
...++++||+. ..+ .++.+|++.++.+++||-+-|.||||||||||+|+|+|+-| -+|+|..- |..+-|+||.
T Consensus 390 ~~~i~~~nl~l-~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~ 464 (604)
T COG4178 390 DHGITLENLSL-RTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQR 464 (604)
T ss_pred cceeEEeeeeE-ECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCC
Confidence 35799999999 433 25699999999999999999999999999999999999999 88998876 4778999999
Q ss_pred CcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CccC-------------CCCcEE
Q 048695 497 DAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVG------SLHY-------------HCPSIL 557 (846)
Q Consensus 497 ~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~------~lSg-------------~~P~iL 557 (846)
+.+...|.||.|.+..... . -.++.+.++|.++||.++.++.=+ .||+ ++|+++
T Consensus 465 PY~p~GtLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 465 PYLPQGTLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred CCCCCccHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 8765459999998753221 1 234568899999999987765422 3554 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+|||-||+||+.+...+++.+++- -.+.|||- .|.. .+..+.++.+-+.
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~--lp~~tvISV~Hr~-tl~~~h~~~l~l~ 587 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEE--LPDATVISVGHRP-TLWNFHSRQLELL 587 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhh--CCCCEEEEeccch-hhHHHHhhheeec
Confidence 999999999999999999999873 35789988 6665 4556667766665
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=8.6e-18 Score=186.87 Aligned_cols=187 Identities=17% Similarity=0.183 Sum_probs=131.2
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeEEEEEeccCc
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~~ 498 (846)
..+.+.|+++ .+. ++.+++|+++++.+|+-++|+|+|||||||+|++|+|+. |..-++-+ -...++-.
T Consensus 74 ~dvk~~sls~-s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~-----y~ls~e~~ 142 (614)
T KOG0927|consen 74 RDVKIESLSL-SFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF-----YLLSREIE 142 (614)
T ss_pred ccceeeeeee-ccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch-----hhhcccCC
Confidence 3689999999 565 689999999999999999999999999999999999996 42222211 11111111
Q ss_pred CCCC-CHHHHHHHHHh-----------hhcC----------------CCCCHHHHHHHHHHHHHHcCC-CcccccccCCc
Q 048695 499 HQTY-SVSESIQFSAA-----------LRVG----------------KTVNAMRRHIHVELVLNQLGL-LPYSNQLVGSL 549 (846)
Q Consensus 499 ~~~~-TV~E~l~f~a~-----------lr~~----------------~~~~~~~~~~~v~~~l~~l~L-~~~~~~~v~~l 549 (846)
-.+. +|.+-+..... +... ..++.+....++-++|.-+|- .+..++.+.++
T Consensus 143 ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 143 PSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred CchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 1111 22222211111 0000 011222334455566666664 46778889999
Q ss_pred cC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE-
Q 048695 550 HY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ- 614 (846)
Q Consensus 550 Sg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~- 614 (846)
|| .+|++|+|||||+|||..+...+-+.|.+. +.+ ++++ +|+-+.+-..|.+|+-|+ .++.
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~-~lVi~sh~QDfln~vCT~Ii~l~-~kkl~ 298 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRI-ILVIVSHSQDFLNGVCTNIIHLD-NKKLI 298 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCc-eEEEEecchhhhhhHhhhhheec-cccee
Confidence 98 999999999999999999999999999886 223 6666 999999999999999999 8885
Q ss_pred EEecCCC
Q 048695 615 AYFGPRG 621 (846)
Q Consensus 615 v~~G~~~ 621 (846)
.|.|+-+
T Consensus 299 ~y~Gnyd 305 (614)
T KOG0927|consen 299 YYEGNYD 305 (614)
T ss_pred eecCCHH
Confidence 4666654
No 392
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.5e-18 Score=181.03 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=135.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeEEEEEeccC--
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLD-- 497 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~-- 497 (846)
.++++|+.| .|.. ..--+..||+++++||++-|+|.||||||||++.|.|+. |++|+|++||+.+.==.-||
T Consensus 322 ~lelrnvrf-ay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR 396 (546)
T COG4615 322 TLELRNVRF-AYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYR 396 (546)
T ss_pred ceeeeeeee-ccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHH
Confidence 699999999 7752 225688999999999999999999999999999999997 69999999994332000000
Q ss_pred cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCc-----cC-------------CCCcEEEE
Q 048695 498 AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSL-----HY-------------HCPSILLL 559 (846)
Q Consensus 498 ~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~l-----Sg-------------~~P~iLlL 559 (846)
.++. +|.......-.+-.+... ...+.++..|++++|.+.-.-.=|+. |. -+-+|+++
T Consensus 397 ~LfS-avFsDyhLF~~ll~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 397 KLFS-AVFSDYHLFDQLLGPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHH-HHhhhHhhhHhhhCCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 0000 221111111122222221 22356888999999876543333333 32 78889999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 560 EEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 560 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
||=.+.-||.-++.+.+.+--+-+++|+||+. |||- .-+..+||++.+. +|+++..-+
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd-~YF~~ADrll~~~-~G~~~e~tg 531 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD-HYFIHADRLLEMR-NGQLSELTG 531 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc-hhhhhHHHHHHHh-cCceeeccc
Confidence 99999999999999988665444899999999 9984 5678899999999 999987643
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=8.7e-18 Score=185.89 Aligned_cols=180 Identities=19% Similarity=0.175 Sum_probs=132.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC----eEEEEEecc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV----LLLCYVEKL 496 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G----~~igyv~Q~ 496 (846)
.|...|.+. .|+ +|.+|++-++++..|.-++|+|+||+|||||||+|+. |.|..-. .+-.+++-.
T Consensus 80 Di~~~~fdL-a~G-----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 80 DIHIDNFDL-AYG-----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ceeeeeeee-eec-----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccchHHH
Confidence 577888888 776 7999999999999999999999999999999999986 3332221 112233322
Q ss_pred CcCCCC-CHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CCCcEEEEe
Q 048695 497 DAHQTY-SVSESIQF-SAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HCPSILLLE 560 (846)
Q Consensus 497 ~~~~~~-TV~E~l~f-~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~P~iLlLD 560 (846)
..-... |.++.+.. ...+. ... +..+..+++|.-+|.++ ...++++++|| .+|+|||||
T Consensus 149 ~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 149 QSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred hhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 111222 44443332 11111 111 23334455899999975 56788899999 999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE-EEecCCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ-AYFGPRG 621 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~-v~~G~~~ 621 (846)
|||+.||..+..-+-+.|+.+ +.|+|+ +||+..+-+.|..|+.++ +-|+ .|.|+-+
T Consensus 224 EPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~-~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLE-NLKLDYYKGNYS 281 (582)
T ss_pred CCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHh-hhhhhhhcCcHH
Confidence 999999999999999999886 378888 999999999999999999 7666 4667543
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=7.7e-17 Score=165.70 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=108.4
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc------ccce----EEEcC---eEEEEEeccCcCCCCCHHHHHH
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP------FTGS----LNGNV---LLLCYVEKLDAHQTYSVSESIQ 509 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~------~~G~----I~~~G---~~igyv~Q~~~~~~~TV~E~l~ 509 (846)
++++++.+.+| +++|+|||||||||||.+|..... ..|. +.-.| ..+.+.+|+....+ +
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 36677888888 889999999999999999874221 1121 11122 45777777654332 0
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------------CCCcEEEEeCCCCCCCHHHHH
Q 048695 510 FSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-----------------HCPSILLLEEPLSGVDTIGTL 572 (846)
Q Consensus 510 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-----------------~~P~iLlLDEPTsgLD~~~~~ 572 (846)
.. ....+++++++|+. .+..+++++++|+ .+|++++|||||+|||+..+.
T Consensus 84 ---------~~-~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 84 ---------PL-CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred ---------cC-CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 01 11123567777777 7778899999987 399999999999999999999
Q ss_pred HHHHHHHHHHhh--cCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 573 TILNILSLCQIR--SGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 573 ~i~~~l~~l~~~--~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+.+.|++++++ .+++|++ +|+++++... |+|-+|. .|
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~-~~ 191 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFR-MK 191 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEE-ec
Confidence 999999998433 2457888 9999999876 9999998 54
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.71 E-value=6e-17 Score=166.91 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=100.5
Q ss_pred eeceeeEEeCC-eEEEEEcCCCCChhhHHHHHc--------CC-ccccceEEEcCeEEEEEeccCcCCCC--CHHHHHHH
Q 048695 443 FSYVTCYAKPQ-NMFALLGGSRTSKVTLLQCLA--------ER-IPFTGSLNGNVLLLCYVEKLDAHQTY--SVSESIQF 510 (846)
Q Consensus 443 L~~vs~~v~~G-e~~al~GpsGaGKSTLL~~La--------G~-~~~~G~I~~~G~~igyv~Q~~~~~~~--TV~E~l~f 510 (846)
.-++|+++.+| ++++|.||||||||||||+|+ |. .|.... ..++|+.|....... ++.+.+.-
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----~~~~~~~~~~~~lg~~~~l~~~~s~ 91 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----SSLPVFENIFADIGDEQSIEQSLST 91 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----ccCcCccEEEEecCchhhhhcCcch
Confidence 44789999999 589999999999999999998 53 243222 235666665333221 33322210
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhhcCcEE
Q 048695 511 SAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTIL-NILSLCQIRSGHYC 589 (846)
Q Consensus 511 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tv 589 (846)
.+. +.+ +..+++..+ .+|+++++||||+|||+..+..+. ..++++ ++.|.++
T Consensus 92 ---------fs~-g~~-~~~~i~~~~---------------~~p~llllDEp~~glD~~~~~~i~~~~l~~l-~~~~~~v 144 (200)
T cd03280 92 ---------FSS-HMK-NIARILQHA---------------DPDSLVLLDELGSGTDPVEGAALAIAILEEL-LERGALV 144 (200)
T ss_pred ---------HHH-HHH-HHHHHHHhC---------------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-HhcCCEE
Confidence 111 111 222333321 479999999999999999999997 478888 6678999
Q ss_pred EE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 590 LS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 590 i~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
|+ ||+ .++.+++|++..|+ +|++.+.+
T Consensus 145 i~~tH~-~~l~~~~d~~~~l~-~g~l~~~~ 172 (200)
T cd03280 145 IATTHY-GELKAYAYKREGVE-NASMEFDP 172 (200)
T ss_pred EEECCH-HHHHHHHhcCCCeE-EEEEEEec
Confidence 99 887 57789999999999 99998874
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=172.29 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=152.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeEEEEEeccCc
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~~ 498 (846)
..++|.++.+ .|+ .--|+-=.+++..||+++++||||-||||+.++|||.+ |++|+ .-+-+++|=||--.
T Consensus 341 ~lv~y~~~~k-~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~ 411 (591)
T COG1245 341 TLVEYPDLKK-TYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYIS 411 (591)
T ss_pred eeeecchhee-ecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeec
Confidence 4678888888 665 23455557888999999999999999999999999987 68887 22267999999644
Q ss_pred CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCC
Q 048695 499 HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLS 564 (846)
Q Consensus 499 ~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTs 564 (846)
--.. ||++.|.-...-+... .-.-.++++-|+|+++.++.+.+||| .+.++.+||||++
T Consensus 412 ~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 412 PDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred CCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 3344 9999887544322111 12456789999999999999999999 8899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC---CCCChHHHHHHHhhCC
Q 048695 565 GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP---RGSNHDIILDYFLLIP 635 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~---~~~~~~~l~~~f~~~~ 635 (846)
.||.+.+..+-+.+|+...++++|.++ .||...+.-++||+++.. |+--.+|- |....+.+..+....+
T Consensus 485 ~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred hccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999999999999997777888888 999999988999999886 33322222 2112344556666654
No 397
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=2e-17 Score=176.14 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------------eE--EEEEeccCcCC-CC-CHHHHHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------------LL--LCYVEKLDAHQ-TY-SVSESIQFSA 512 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------------~~--igyv~Q~~~~~-~~-TV~E~l~f~a 512 (846)
+++|+|||||||||||++|++... ..|++..++ .. +.|..|++... -. ++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~--- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS--- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce---
Confidence 999999999999999999998763 445544321 12 33333332211 11 2222110
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHcCCCcc----------------------cccccCCccC-------------C----C
Q 048695 513 ALRVGKTVNAMRRHIHVELVLNQLGLLPY----------------------SNQLVGSLHY-------------H----C 553 (846)
Q Consensus 513 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----------------------~~~~v~~lSg-------------~----~ 553 (846)
..+.. + +....+.++++++.+|+... .++++.++|+ . +
T Consensus 101 ~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~ 177 (247)
T cd03275 101 SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP 177 (247)
T ss_pred EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC
Confidence 01111 1 11123456788899998532 1233467776 2 3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
|++++|||||+|||+..+..+.+.|+++ ++.|.+||+ ||+. ++.+.+|++++|.+++.+
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~-~~~g~~vi~isH~~-~~~~~~d~i~~~~~~~~~ 237 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQ-AGPNFQFIVISLKE-EFFSKADALVGVYRDQEC 237 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHh-ccCCcEEEEEECCH-HHHhhCCeEEEEEecCCC
Confidence 8999999999999999999999999999 666899999 9995 456889999999966543
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.5e-16 Score=169.94 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=146.1
Q ss_pred CCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEE
Q 048695 416 PVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYV 493 (846)
Q Consensus 416 ~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv 493 (846)
+-.|+.|-++||++ .|. +.++++++++|-|.-...+||+||||.||||||++|.|.+ |..|+.+-|- -+||+.
T Consensus 581 ~L~PPvLGlH~VtF-gy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 581 KLNPPVLGLHDVTF-GYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CCCCCeeecccccc-cCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeech
Confidence 34577999999999 775 2689999999999999999999999999999999999987 6999998776 479998
Q ss_pred eccC--cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccc-ccCCccC-------------CCCcE
Q 048695 494 EKLD--AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQ-LVGSLHY-------------HCPSI 556 (846)
Q Consensus 494 ~Q~~--~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-~v~~lSg-------------~~P~i 556 (846)
-|+. .+-.. |.-|.|.-.. .++- +..+..|-.+||...+++ .+..||| ..|+|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDv 725 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDV 725 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCE
Confidence 8874 34444 8777776332 2222 345678899999887775 4778888 89999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
|+|||||++||..+...+.+.|+++ .| .||+ +||-..+.+.--.++++..+|----.|+-
T Consensus 726 lILDEPTNNLDIESIDALaEAIney---~G-gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 726 LILDEPTNNLDIESIDALAEAINEY---NG-GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDF 786 (807)
T ss_pred EEecCCCCCcchhhHHHHHHHHHhc---cC-cEEEEecccceeeecCceEEEEccCChhhccccH
Confidence 9999999999999999999999887 34 4555 99987777766677777733322334444
No 399
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.64 E-value=3.6e-15 Score=147.68 Aligned_cols=185 Identities=17% Similarity=0.153 Sum_probs=136.0
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
..++++++.+ .|.. ..+++-|+|++++.|.-..++|.||||||||||+|+|..- -.|.|.++|
T Consensus 12 ~aievsgl~f-~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 12 FAIEVSGLQF-KYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred ceEEEeccEE-eccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence 3699999999 7752 4599999999999999999999999999999999999753 458888888
Q ss_pred -eEEEEEec----------cCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCc----
Q 048695 488 -LLLCYVEK----------LDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP--YSNQLVGSL---- 549 (846)
Q Consensus 488 -~~igyv~Q----------~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~v~~l---- 549 (846)
....|.-- +-.+... ++.+ +.|+.. +... ++-+++++.|+++- ..++.....
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred cCceeEecccccccccccccccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccceEEEeeccccchhhh
Confidence 12233321 1122223 5443 444432 2222 34456677776642 122221111
Q ss_pred ---cC-CCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 550 ---HY-HCP-SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 550 ---Sg-~~P-~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
-| .+| ++|+|||-|-.||..++..+++.+++-+...|.||+. ||--+-+.....+++.++ +|+++-.-+.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIK-SGKLVDNLKY 232 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEec-CCeeeecccc
Confidence 12 555 8999999999999999999999999987888999999 999999999999999999 9999885444
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-15 Score=169.09 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=149.3
Q ss_pred CCceEEEEeceeeeeeccCCCCCc-ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC-eEEEEE
Q 048695 417 VEPVTFVFEGLTFSRYEEGSNEST-PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV-LLLCYV 493 (846)
Q Consensus 417 ~~~~~l~~~~l~~~~~~~~~~~~~-~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G-~~igyv 493 (846)
..+..+++.+|++ .|.+ +. +++.+++..++.-+-.+++|+||+||||++|++.|-. |..|.+.+++ ++++|-
T Consensus 358 ~~~p~l~i~~V~f-~y~p----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 358 LSPPNLRISYVAF-EYTP----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred CCCCeeEEEeeec-cCCC----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecch
Confidence 3567899999998 6653 23 7999999999999999999999999999999999965 6999999988 789999
Q ss_pred eccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEE
Q 048695 494 EKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 494 ~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLl 558 (846)
.|...-+-. .|-+ +.+..+.+ ++.++ +.+++-+..+||+ +++.+.+.+||| .+|.+|+
T Consensus 433 ~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNA-VDFMEKSF--PGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred hHhhhhHHHHHhHH-HHHHHHhC--CCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 997542222 3332 23333333 23333 4566778999997 567777899998 9999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEE-ecC
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAY-FGP 619 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~-~G~ 619 (846)
|||||+.||-.+-..+.+.|+.. +| .||| |||.+.+...|+.+.+.+ +|++.- .|.
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F---~G-GVv~VSHd~~fi~~~c~E~Wvve-~g~vt~ieg~ 563 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNF---NG-GVVLVSHDEEFISSLCKELWVVE-DGKVTPIEGG 563 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhc---CC-cEEEEECcHHHHhhcCceeEEEc-CCcEEeeecc
Confidence 99999999999999999888887 34 4566 999999999999999999 999874 343
No 401
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.60 E-value=1.4e-15 Score=157.03 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=97.3
Q ss_pred eeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEEc-CeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCH
Q 048695 446 VTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNGN-VLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNA 522 (846)
Q Consensus 446 vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~~-G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~ 522 (846)
.++++.+|++++|+|||||||||||++|++.. ...|..... ...+++..|...+++ ..+++..... .. .
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~--~~d~i~~~~s-----~~-~ 93 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIG--AEDSISDGRS-----TF-M 93 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEec--CcccccCCce-----eH-H
Confidence 34555689999999999999999999999543 234432211 134555544433332 2222211100 00 1
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCcEEEE-ecChhhHHh
Q 048695 523 MRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILN-ILSLCQIRSGHYCLS-NTPYARTVP 600 (846)
Q Consensus 523 ~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~-~h~~~~i~~ 600 (846)
.+ ..++..+++.. .+|+++++||||+|||+..+..+.. +++.+ .+.+.++|+ ||+.+ +.+
T Consensus 94 ~e-~~~l~~i~~~~---------------~~~~llllDEp~~gld~~~~~~l~~~ll~~l-~~~~~~vi~~tH~~~-~~~ 155 (202)
T cd03243 94 AE-LLELKEILSLA---------------TPRSLVLIDELGRGTSTAEGLAIAYAVLEHL-LEKGCRTLFATHFHE-LAD 155 (202)
T ss_pred HH-HHHHHHHHHhc---------------cCCeEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEECChHH-HHH
Confidence 11 12344444432 4799999999999999999888765 56777 667889999 99864 556
Q ss_pred hcCEEEEEccCCEEEEecCC
Q 048695 601 FFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 601 ~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++..++ .|++...++.
T Consensus 156 ~~~~~~~l~-~~~~~~~~~~ 174 (202)
T cd03243 156 LPEQVPGVK-NLHMEELITT 174 (202)
T ss_pred HhhcCCCeE-EEEEEEEecC
Confidence 788888888 8999888765
No 402
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=162.87 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=141.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----eEEEEEe
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----LLLCYVE 494 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----~~igyv~ 494 (846)
..+++++|+. ..+ + ++..+++|+|+.|+.|+-+.|+||||||||+|||+|+|+-| .+|++.--. +.+=|+|
T Consensus 432 n~i~~e~v~l-~tP--t-~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 432 NAIEFEEVSL-STP--T-NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred ceEEeeeeee-cCC--C-CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 5899999999 432 1 25678899999999999999999999999999999999999 899997644 5699999
Q ss_pred ccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC-----------CccC------------
Q 048695 495 KLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVG-----------SLHY------------ 551 (846)
Q Consensus 495 Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~-----------~lSg------------ 551 (846)
|.|...-.|.||.+.+..+--.+ ..+....+++.+.|+.++|.|+.++.-| .||+
T Consensus 508 QrPYmt~GTLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 508 QRPYMTLGTLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred CCCCccccchhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 99864433999999987432211 1122334578888999999887654322 2343
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
++|++-+|||-||++|......+.+.+|+. |.|.|- .|..+ +.++=|.++-|+.+|+
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~----giT~iSVgHRkS-L~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM----GITFISVGHRKS-LWKFHDYVLRMDGRGS 644 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc----CCeEEEeccHHH-HHhhhhEEEEecCCCc
Confidence 999999999999999999988888777664 899998 76653 4566788888883343
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.57 E-value=3.6e-15 Score=162.87 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=116.2
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCc-c----ccceEE-------EcC--------------eEEEEEecc----Cc
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERI-P----FTGSLN-------GNV--------------LLLCYVEKL----DA 498 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~----~~G~I~-------~~G--------------~~igyv~Q~----~~ 498 (846)
..++|++++|+||||-||||-+|+|+|.+ | ..+.-- +.| -++.-=+|- +.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 35799999999999999999999999986 5 222111 112 122222332 22
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCC
Q 048695 499 HQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSG 565 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsg 565 (846)
....||.|-|.-. +.+...++++++|+|++..|+.+.+||| .+.++.++|||||-
T Consensus 176 ~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 176 VVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred HhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 2223777766521 1123688999999999999999999999 89999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
||...+....+.+|++ ++.+++||+ .||+..+.-++|-|.++.
T Consensus 244 LDi~qRl~~ar~Irel-~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAARVIREL-AEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHHHHHHHH-hccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999 566999999 999999999999999987
No 404
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=9e-15 Score=152.03 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=51.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-C-cEEEE-ecChhhHHhhcC--EEEEEccCCE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRS-G-HYCLS-NTPYARTVPFFD--LALILTKEGH 613 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g-~tvi~-~h~~~~i~~~~D--~vllL~~~G~ 613 (846)
.+|+++++||||+|||+..+..+++.|+++ ++. | .++|+ ||++.++.+.+| ++++|+ +|+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~i~~~l~~~-~~~~g~~~viiith~~~~~~~~~~~~~v~~l~-~g~ 211 (213)
T cd03277 147 TRCPFRVVDEINQGMDPTNERKVFDMLVET-ACKEGTSQYFLITPKLLPGLNYHEKMTVLCVY-NGP 211 (213)
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHH-hhcCCCceEEEEchhhccCCcccCceEEEEEe-cCc
Confidence 489999999999999999999999999999 554 5 57888 888888888776 788888 876
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.54 E-value=2e-14 Score=155.25 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=128.7
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---------ccceEEEcC-eEEEEEeccCc-CCCC-CHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---------FTGSLNGNV-LLLCYVEKLDA-HQTY-SVSE 506 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---------~~G~I~~~G-~~igyv~Q~~~-~~~~-TV~E 506 (846)
.+.+|+|||+.++||++++|+|+|||||||||++|+|... ++|.|.+-- ...+.+|-++. -+.. |+.|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 5679999999999999999999999999999999999642 778776643 33445555432 2334 7777
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCccC-------------CCCcEEEEeCCCCCCCHHHH
Q 048695 507 SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP--YSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGT 571 (846)
Q Consensus 507 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~ 571 (846)
++.- .+. +.....++|.+.||.+ +..+..++||. .+|.+++.||=.|.||+.++
T Consensus 475 hl~s---------~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA 543 (593)
T COG2401 475 HLRS---------KTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543 (593)
T ss_pred HHhh---------ccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHH
Confidence 6641 111 1124668999999976 34566777875 89999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEE
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQ 614 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~ 614 (846)
..+.+-|.+++++.|.|+++ ||..+.+..+ -|+++++. =|++
T Consensus 544 ~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vg-Yg~v 587 (593)
T COG2401 544 VRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVG-YGKV 587 (593)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEee-cccc
Confidence 99999999998889999999 9988888887 78888887 4443
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=2.9e-15 Score=156.61 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=92.5
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCC--CHHHHHHHHHhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTY--SVSESIQFSAAL 514 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~--TV~E~l~f~a~l 514 (846)
.+.+.+|++++.++|++++|.||||+||||||++++-..- ..| .|||.+....+. .+.+.+...-..
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g---------~~vpa~~~~~~~~~~il~~~~l~d~~ 86 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG---------CFVPCDSADIPIVDCILARVGASDSQ 86 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhC---------CCcCcccEEEeccceeEeeeccccch
Confidence 4578999999999999999999999999999999873210 112 133332111100 000000000000
Q ss_pred hcCCCCCH-HHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHhhcCcEEE
Q 048695 515 RVGKTVNA-MRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP---LSGVDTIGTLTILNILSLCQIRSGHYCL 590 (846)
Q Consensus 515 r~~~~~~~-~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi 590 (846)
. .+.+. .....+...+++.+ .+|+++||||| |++||+.+... ..++.+.++.|.++|
T Consensus 87 ~--~~lS~~~~e~~~~a~il~~~---------------~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vl 147 (222)
T cd03285 87 L--KGVSTFMAEMLETAAILKSA---------------TENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCL 147 (222)
T ss_pred h--cCcChHHHHHHHHHHHHHhC---------------CCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEE
Confidence 0 00110 00111122222210 57999999999 99999988854 344555233578888
Q ss_pred E-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 591 S-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 591 ~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
+ ||. .++.+++|++..++ +|++...++
T Consensus 148 isTH~-~el~~~~~~~~~i~-~g~~~~~~~ 175 (222)
T cd03285 148 FATHF-HELTALADEVPNVK-NLHVTALTD 175 (222)
T ss_pred EEech-HHHHHHhhcCCCeE-EEEEEEEEe
Confidence 8 995 78899999999999 999987764
No 407
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.52 E-value=3.6e-14 Score=147.82 Aligned_cols=151 Identities=16% Similarity=0.064 Sum_probs=103.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEE-cCeEEEEEeccCcCCCC-CHHHHHHHHHhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNG-NVLLLCYVEKLDAHQTY-SVSESIQFSAAL 514 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~-~G~~igyv~Q~~~~~~~-TV~E~l~f~a~l 514 (846)
++.+.+|+++..++ ++++|.||||+|||||||.+++.. ...|...- ....++++.| +++. ++.|++..+...
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~---i~~~~~~~~~ls~g~s~ 92 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDR---IFTRIGASDDLAGGRST 92 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceee---EeccCCchhhhccCcch
Confidence 35688999999887 999999999999999999998753 13332211 1156777765 4566 899998754211
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHhhc-CcEEE
Q 048695 515 RVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP---LSGVDTIGTLTILNILSLCQIRS-GHYCL 590 (846)
Q Consensus 515 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~-g~tvi 590 (846)
......++..+++.. .+|++++|||| |+++|.... ...+++.+ .+. +.++|
T Consensus 93 -------f~~e~~~l~~~l~~~---------------~~~~llllDEp~~gt~~lD~~~~--~~~il~~l-~~~~~~~vi 147 (216)
T cd03284 93 -------FMVEMVETANILNNA---------------TERSLVLLDEIGRGTSTYDGLSI--AWAIVEYL-HEKIGAKTL 147 (216)
T ss_pred -------HHHHHHHHHHHHHhC---------------CCCeEEEEecCCCCCChHHHHHH--HHHHHHHH-HhccCCcEE
Confidence 111112333344321 67999999999 888887552 23455555 444 78888
Q ss_pred E-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 591 S-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 591 ~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+ ||+. ++.+++|++..++ +|++...++.
T Consensus 148 ~~TH~~-~l~~l~~~~~~v~-~~~~~~~~~~ 176 (216)
T cd03284 148 FATHYH-ELTELEGKLPRVK-NFHVAVKEKG 176 (216)
T ss_pred EEeCcH-HHHHHhhcCCCeE-EEEEEEEeeC
Confidence 8 9995 6778899887777 8888776655
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=8e-14 Score=143.83 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=89.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr 515 (846)
++.+.+|+++..++|++++|+||||+||||||+++++..- .-| .+| +...+. ++.|++.......
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G---------~~v---pa~~~~l~~~d~I~~~~~~~ 82 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG---------CFV---PAEYATLPIFNRLLSRLSND 82 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC---------CCc---chhhcCccChhheeEecCCc
Confidence 4679999999999999999999999999999999987642 112 123 233344 6666665432221
Q ss_pred cCCCCCHH--HHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhhcCcEEEE-
Q 048695 516 VGKTVNAM--RRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI-LNILSLCQIRSGHYCLS- 591 (846)
Q Consensus 516 ~~~~~~~~--~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~- 591 (846)
. ...+. .-...+.++...+.+. .+|++++||||++|+|+.....+ ...++.+ .+.|.++|+
T Consensus 83 d--~~~~~~S~fs~e~~~~~~il~~~------------~~~~lvllDE~~~gt~~~~~~~l~~~il~~l-~~~~~~~i~~ 147 (204)
T cd03282 83 D--SMERNLSTFASEMSETAYILDYA------------DGDSLVLIDELGRGTSSADGFAISLAILECL-IKKESTVFFA 147 (204)
T ss_pred c--ccchhhhHHHHHHHHHHHHHHhc------------CCCcEEEeccccCCCCHHHHHHHHHHHHHHH-HhcCCEEEEE
Confidence 0 01000 0001111111111111 57899999999999999876665 4567777 667999999
Q ss_pred ecChhhHHhhc
Q 048695 592 NTPYARTVPFF 602 (846)
Q Consensus 592 ~h~~~~i~~~~ 602 (846)
||+.+.+....
T Consensus 148 TH~~~l~~~~~ 158 (204)
T cd03282 148 THFRDIAAILG 158 (204)
T ss_pred CChHHHHHHhh
Confidence 99988776554
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.46 E-value=9.7e-13 Score=168.06 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=87.5
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC----------------CCCcEEEEeCCCCC
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY----------------HCPSILLLEEPLSG 565 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg----------------~~P~iLlLDEPTsg 565 (846)
||.|.+.|.... .+-.+.-+.|+.+||..+ ..+...+||| ..+.+++|||||+|
T Consensus 1662 tv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~G 1732 (1809)
T PRK00635 1662 PIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATS 1732 (1809)
T ss_pred CHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Confidence 677777765321 123345678899999864 5778888888 23689999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-----CCEEEEecCCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-----EGHQAYFGPRG 621 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-----~G~~v~~G~~~ 621 (846)
|++.....+++.|++| .+.|.|||+ .|+.+.+.. +|.|+=|.| +|++++.|+|+
T Consensus 1733 Lh~~d~~~Ll~~l~~L-~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1733 LDNQQKSALLVQLRTL-VSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred CCHHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHH
Confidence 9999999999999999 889999999 999876655 999999954 68999999993
No 410
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.44 E-value=8.5e-13 Score=133.41 Aligned_cols=59 Identities=7% Similarity=-0.025 Sum_probs=51.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+|+++++|||++|||+..+..+.+.|+++ ++.|.++|+ +|+.+.+ +.+|+++.+.+.|
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~-~~~g~tiIiiSH~~~~~-~~adrvi~i~~~~ 174 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEM-AKHTSQFIVITLKKEMF-ENADKLIGVLFVH 174 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEECCHHHH-hhCCeEEEEEEeC
Confidence 579999999999999999999999999999 566889999 9997655 6899999998434
No 411
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.43 E-value=1.9e-14 Score=147.62 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHhhccccc-hhhHHHHHH--------H-------------------------HHHHHH-HHHhhccc
Q 048695 100 KSTKILVRRQIKIAKRLHQIL-PHSSTLCLQ--------Q-------------------------ESSNHV-NLTLHDAL 144 (846)
Q Consensus 100 ~q~~~l~~Rq~~l~~rd~~~~-~~~~~~~~~--------~-------------------------~~~~~l-~~~~~~r~ 144 (846)
+|++++++|++++.+||+... ....+.-++ . ...... .....+|.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 599999999999999999544 222111000 0 001122 44467888
Q ss_pred eeeeecccccccccccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHH
Q 048695 145 ESHKQKMIQAIVQDIFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGS 224 (846)
Q Consensus 145 i~~k~~~~~~~~~~y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~ 224 (846)
.+.|++ ..+.|++.++.+++.+..++..++..+++.++.|++.|++.+ +|+.+++ .+++...+..
T Consensus 81 ~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~-------~~~l~~~~~~ 145 (210)
T PF01061_consen 81 TLERER----ASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE----SFFLFLL-------ILLLSILCSS 145 (210)
T ss_pred cccccc----ccccccchhhheeeccccccccccccchhhhhhhhhhccccc----cchheec-------cccccccccc
Confidence 899999 999999999999999999999999999999999999999763 5666666 7888888999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhc
Q 048695 225 SVFFFLSAISSIPEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQF 289 (846)
Q Consensus 225 ~~f~~iaa~~~~~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef 289 (846)
+++.++++++++...|..++++...++.+++|.++|.+.+|+|++|+.|+||+.|+.+++..++|
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 146 GLGLLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred ccccccccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999876664
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=4.7e-12 Score=147.39 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=85.6
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC----------------CCCcEEEEeCCCCC
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY----------------HCPSILLLEEPLSG 565 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg----------------~~P~iLlLDEPTsg 565 (846)
||.|...|.... + +-.+.-+.|..+||.-. ..++..+||| ...-+.+|||||+|
T Consensus 785 TveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 785 TVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred cHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 666666665421 1 12234456778898753 4667777887 56679999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-----CCEEEEecCCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-----EGHQAYFGPRG 621 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-----~G~~v~~G~~~ 621 (846)
|-.....++++.|.+| .+.|-|||+ .|+++.+ +.+|.|+=|.| +|+++..|+|+
T Consensus 856 LH~~Di~kLl~VL~rL-vd~GnTViVIEHNLdVI-k~AD~IIDLGPeGG~~GG~iva~GTPe 915 (935)
T COG0178 856 LHFDDIKKLLEVLHRL-VDKGNTVIVIEHNLDVI-KTADWIIDLGPEGGDGGGEIVASGTPE 915 (935)
T ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecccceE-eecCEEEEcCCCCCCCCceEEEecCHH
Confidence 9999999999999999 889999999 9999655 77999999954 68999999994
No 413
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=4.8e-12 Score=131.68 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=88.0
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC--ccccceEEEcC-eEEEEEeccCcCCC-C-CHHHHHHHHHhhh
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER--IPFTGSLNGNV-LLLCYVEKLDAHQT-Y-SVSESIQFSAALR 515 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~~~~G~I~~~G-~~igyv~Q~~~~~~-~-TV~E~l~f~a~lr 515 (846)
.+=+|+++.=..+.+++|.||||+|||||||.++.. +...|...... -.++|..|...... . ++.+++....
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~--- 93 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFM--- 93 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHH---
Confidence 344555554222389999999999999999999843 34566655443 56788888654433 3 7766653211
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhhc---CcEEEE
Q 048695 516 VGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI-LNILSLCQIRS---GHYCLS 591 (846)
Q Consensus 516 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~---g~tvi~ 591 (846)
.+ .+++..++... .+|+++++|||++|+|+.....+ ...++++ .+. +.++|+
T Consensus 94 -------~e-l~~l~~~l~~~---------------~~~slvllDE~~~gtd~~~~~~~~~ail~~l-~~~~~~~~~vli 149 (213)
T cd03281 94 -------ID-LYQVSKALRLA---------------TRRSLVLIDEFGKGTDTEDGAGLLIATIEHL-LKRGPECPRVIV 149 (213)
T ss_pred -------HH-HHHHHHHHHhC---------------CCCcEEEeccccCCCCHHHHHHHHHHHHHHH-HhcCCCCcEEEE
Confidence 11 12233333221 56899999999999999765554 5688888 443 246777
Q ss_pred -ecChhhHHhh
Q 048695 592 -NTPYARTVPF 601 (846)
Q Consensus 592 -~h~~~~i~~~ 601 (846)
||+.+.+...
T Consensus 150 ~TH~~~l~~~~ 160 (213)
T cd03281 150 STHFHELFNRS 160 (213)
T ss_pred EcChHHHHHhh
Confidence 9998877654
No 414
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.37 E-value=1.5e-12 Score=139.47 Aligned_cols=124 Identities=14% Similarity=0.079 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEE-------------EEeccCcCCCC-CHHHHHHHHHhhhcCC
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLC-------------YVEKLDAHQTY-SVSESIQFSAALRVGK 518 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~ig-------------yv~Q~~~~~~~-TV~E~l~f~a~lr~~~ 518 (846)
.-++|+||||||||||+++|+|.++ .+|+|.++|+.++ +++|.+. .+. +|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH--------
Confidence 5789999999999999999999985 9999999995544 4444332 122 33332110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh
Q 048695 519 TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYAR 597 (846)
Q Consensus 519 ~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~ 597 (846)
.+-+..++.. .+|+++++|||++ ...+..+++.+ + .|.++|+ +|+.+.
T Consensus 183 -------~~~~~~~i~~----------------~~P~villDE~~~------~e~~~~l~~~~-~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 -------AEGMMMLIRS----------------MSPDVIVVDEIGR------EEDVEALLEAL-H-AGVSIIATAHGRDV 231 (270)
T ss_pred -------HHHHHHHHHh----------------CCCCEEEEeCCCc------HHHHHHHHHHH-h-CCCEEEEEechhHH
Confidence 0011111110 6899999999974 34455566665 3 6999999 996544
Q ss_pred --H-----------HhhcCEEEEEccCCEEEEecCC
Q 048695 598 --T-----------VPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 598 --i-----------~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+ ..+|||+++|+ +|+ ..|.+
T Consensus 232 ~~~~~r~~~~~l~~~~~~~r~i~L~-~~~--~~g~~ 264 (270)
T TIGR02858 232 EDLYKRPVFKELIENEAFERYVVLS-RRK--GPGTV 264 (270)
T ss_pred HHHHhChHHHHHHhcCceEEEEEEe-cCC--CCCce
Confidence 4 36799999999 665 44444
No 415
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=6.4e-12 Score=136.07 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+|+++++||||+|||+..+..+++.|+++ .+ +.++|+ ||+.+ +...+|+++.|.
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~-~~-~~tii~isH~~~-~~~~~d~~~~l~ 246 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKEL-SR-SHQVLCITHLPQ-VAAMADNHFLVE 246 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEechHH-HHHhcCcEEEEE
Confidence 99999999999999999999999999998 44 688888 99887 558999999998
No 416
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.34 E-value=4e-12 Score=126.61 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=84.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEE-EeccCcCCCCCHHHHHHHHHhhhcCCCCC
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCY-VEKLDAHQTYSVSESIQFSAALRVGKTVN 521 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igy-v~Q~~~~~~~TV~E~l~f~a~lr~~~~~~ 521 (846)
..+..+.+|.++.|+|||||||||+|+++....- .+|.+.... .+.|+ +++....+ +.. ...+..+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------i~~--~~~lS~G-- 81 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-------IFT--RLQLSGG-- 81 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-------ehh--eeecccc--
Confidence 3344455567999999999999999999876542 333222111 11121 22221111 000 0011111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHh
Q 048695 522 AMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVP 600 (846)
Q Consensus 522 ~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~ 600 (846)
..+ ...+..+|....+ .+|+++++|||++|+|+..+..+.+.+.++ .++|.++|+ ||+.+.. +
T Consensus 82 ~~~-~~~la~~L~~~~~-------------~~~~llllDEp~~gld~~~~~~l~~~l~~~-~~~~~~vii~TH~~~~~-~ 145 (162)
T cd03227 82 EKE-LSALALILALASL-------------KPRPLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIVITHLPELA-E 145 (162)
T ss_pred HHH-HHHHHHHHHhcCC-------------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHH-H
Confidence 111 1122222221110 379999999999999999999999999998 444889988 9998766 5
Q ss_pred hcCEEEEEc
Q 048695 601 FFDLALILT 609 (846)
Q Consensus 601 ~~D~vllL~ 609 (846)
.+|+++.|.
T Consensus 146 ~~d~~~~l~ 154 (162)
T cd03227 146 LADKLIHIK 154 (162)
T ss_pred hhhhEEEEE
Confidence 689999997
No 417
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.34 E-value=2.1e-12 Score=143.31 Aligned_cols=164 Identities=18% Similarity=0.168 Sum_probs=122.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEeccCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKLDA 498 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~~~ 498 (846)
-|.++|+-+ ..+ .+..++..+|+.+++|--+.|.||||||||+|.|+|+|+-| ..|....-- ..+-|+||.+.
T Consensus 481 gI~lenIpv-ItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 481 GIILENIPV-ITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred ceEEecCce-ecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc
Confidence 578888887 433 35779999999999999999999999999999999999999 666665543 56999999987
Q ss_pred CCCCCHHHHHHHHHhhhc--CCCCCHHHHHHHHHHHHHHcCCCcccccccC---------CccC-------------CCC
Q 048695 499 HQTYSVSESIQFSAALRV--GKTVNAMRRHIHVELVLNQLGLLPYSNQLVG---------SLHY-------------HCP 554 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~--~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~---------~lSg-------------~~P 554 (846)
.-..|.||.+.+.-..-. ..+.+ ++..+.+|+.+.|++++.+-.| .||| ++|
T Consensus 556 ms~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrP 631 (728)
T KOG0064|consen 556 MSGGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRP 631 (728)
T ss_pred cCcCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCc
Confidence 663388888876321100 01122 2356778888888877665543 2455 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYAR 597 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~ 597 (846)
+.-+|||-||+..+.....+.+..++ .|.+.+- ||..+.
T Consensus 632 kyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpsl 671 (728)
T KOG0064|consen 632 KYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSL 671 (728)
T ss_pred chhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccH
Confidence 99999999999988888877776654 5889888 666543
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.33 E-value=1.4e-12 Score=119.31 Aligned_cols=65 Identities=15% Similarity=-0.048 Sum_probs=56.9
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEEEEEeccCcCCCCCHHHH
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLLCYVEKLDAHQTYSVSES 507 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~igyv~Q~~~~~~~TV~E~ 507 (846)
+.+|+++++.+++||+++|+||||||||||++++. +|++.++| +..+|++|+ ++..|++||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 57899999999999999999999999999999987 78999998 456777776 444499999
Q ss_pred HHHH
Q 048695 508 IQFS 511 (846)
Q Consensus 508 l~f~ 511 (846)
|.+.
T Consensus 75 i~~~ 78 (107)
T cd00820 75 IFLI 78 (107)
T ss_pred ceee
Confidence 9873
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=9.7e-13 Score=142.54 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=130.4
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcCeEEEEEec
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNVLLLCYVEK 495 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G~~igyv~Q 495 (846)
.+.|.++|.+.+. .++.++.|-|+.|-.|..++|+||||-||||||+.|+.+. |..=+ +-+|.|
T Consensus 262 a~DIKiEnF~ISA------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID-------vLlCEQ 328 (807)
T KOG0066|consen 262 AMDIKIENFDISA------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID-------VLLCEQ 328 (807)
T ss_pred cccceeeeeeeec------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc-------eEeeee
Confidence 3568888888832 2578999999999999999999999999999999999984 32222 345666
Q ss_pred cCcCCCCCHHHHHHH-----------HH----------------------hhhcCCCCCHHHHHHHHHHHHHHcCCCc-c
Q 048695 496 LDAHQTYSVSESIQF-----------SA----------------------ALRVGKTVNAMRRHIHVELVLNQLGLLP-Y 541 (846)
Q Consensus 496 ~~~~~~~TV~E~l~f-----------~a----------------------~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~ 541 (846)
+-..-..|.-+++.- .+ .+| .+.....+.+.+.+|.-||.+. .
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELr---aiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELR---AIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH---HhccccchhHHHHHHhhcCCChhH
Confidence 543322222222111 11 111 0111122346677777778764 4
Q ss_pred cccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEE
Q 048695 542 SNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALI 607 (846)
Q Consensus 542 ~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vll 607 (846)
.+++....|| ..|-+|.|||||+.||..+...+-+.|+.+ + +|+++ +||-..+...|..|+.
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW-k---KTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW-K---KTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh-h---heeEEEecccchHHHHHHHHhh
Confidence 5666777787 899999999999999999998888999888 3 58888 9999999999999999
Q ss_pred EccCCEEE-EecC
Q 048695 608 LTKEGHQA-YFGP 619 (846)
Q Consensus 608 L~~~G~~v-~~G~ 619 (846)
|+ +-++- |.|.
T Consensus 482 LD-~qkLhyYrGN 493 (807)
T KOG0066|consen 482 LD-NQKLHYYRGN 493 (807)
T ss_pred hh-hhhhhhhcch
Confidence 99 77775 4444
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=8.5e-12 Score=130.21 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=90.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEEcC-eEEEEEeccCcCCCC--CHHHHHH-HHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNGNV-LLLCYVEKLDAHQTY--SVSESIQ-FSA 512 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~~G-~~igyv~Q~~~~~~~--TV~E~l~-f~a 512 (846)
++.+.+|+++.+++|++++|.||||+||||+|+++++.. +..|.....- -.++|..|-...... ++.+++. |.+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~ 96 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV 96 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHH
Confidence 357899999999999999999999999999999999953 4777765443 345555443222211 3333322 222
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhhc-CcEEE
Q 048695 513 ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI-LNILSLCQIRS-GHYCL 590 (846)
Q Consensus 513 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~-g~tvi 590 (846)
.+ .++.++++.. .+|+++|+|||.+|.|+.....+ ..+++.+ .+. +.++|
T Consensus 97 e~------------~~~~~il~~~---------------~~~sLvllDE~~~gT~~~d~~~i~~~il~~l-~~~~~~~~i 148 (222)
T cd03287 97 EL------------SETSHILSNC---------------TSRSLVILDELGRGTSTHDGIAIAYATLHYL-LEEKKCLVL 148 (222)
T ss_pred HH------------HHHHHHHHhC---------------CCCeEEEEccCCCCCChhhHHHHHHHHHHHH-HhccCCeEE
Confidence 11 2344444421 46899999999999987777764 5677787 444 78888
Q ss_pred E-ecChhhH
Q 048695 591 S-NTPYART 598 (846)
Q Consensus 591 ~-~h~~~~i 598 (846)
+ ||+.+..
T Consensus 149 ~~TH~~~l~ 157 (222)
T cd03287 149 FVTHYPSLG 157 (222)
T ss_pred EEcccHHHH
Confidence 8 9997654
No 421
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.24 E-value=1.1e-10 Score=132.95 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=104.2
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------------eEEEEEeccC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------------------LLLCYVEKLD 497 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------------------~~igyv~Q~~ 497 (846)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ..|.|.+.| +.+++|.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 46789999 9999999999999999999999999999975 889888865 3456666543
Q ss_pred cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---CCCcE-EEEeCC--CCCCCHHHH
Q 048695 498 AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---HCPSI-LLLEEP--LSGVDTIGT 571 (846)
Q Consensus 498 ~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---~~P~i-LlLDEP--TsgLD~~~~ 571 (846)
.-. -.+....+.+ -.+.|.+..-|-+-+ -...+++. +.-+| +.+.|| |+|+|+...
T Consensus 224 ~~~--~~r~~~~~~a--------------~~iAEyfr~~g~~Vl--l~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~ 285 (438)
T PRK07721 224 QPA--LMRIKGAYTA--------------TAIAEYFRDQGLNVM--LMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVF 285 (438)
T ss_pred CCH--HHHHHHHHHH--------------HHHHHHHHHCCCcEE--EEEeChHHHHHHHHHHHHhcCCCCccccCCHHHH
Confidence 211 0011111100 001111111111000 00000000 00011 122365 789999999
Q ss_pred HHHHHHHHHHHh-hcCc-----EEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 572 LTILNILSLCQI-RSGH-----YCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 572 ~~i~~~l~~l~~-~~g~-----tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
..+.++++++.. +.|. ||++ +||+++ .+||++..+. +|+++..++.
T Consensus 286 ~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~-dG~Ivls~~l 338 (438)
T PRK07721 286 AILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGIL-DGHFVLDRQL 338 (438)
T ss_pred HHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEec-CEEEEEeccH
Confidence 999999999832 3675 8888 999985 8899999999 9999999986
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.24 E-value=2e-11 Score=124.31 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=74.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCC-c-cccceEEEcC-eEEEEEeccCcCCCC--CHHHHH-HHHHhhhcCCCCCHHHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAER-I-PFTGSLNGNV-LLLCYVEKLDAHQTY--SVSESI-QFSAALRVGKTVNAMRRHIH 528 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~-~-~~~G~I~~~G-~~igyv~Q~~~~~~~--TV~E~l-~f~a~lr~~~~~~~~~~~~~ 528 (846)
+++|.||||+|||||||.++-. . ...|...-.. -.++++.|.-..++. +..+.+ .|+. +. .+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~-----------~~-~~ 68 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMV-----------EM-KE 68 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHH-----------HH-HH
Confidence 4689999999999999999832 2 2334322211 334444432222211 222111 1111 11 12
Q ss_pred HHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhh-cCcEEEE-ecChhhHHhhcCEE
Q 048695 529 VELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTIL-NILSLCQIR-SGHYCLS-NTPYARTVPFFDLA 605 (846)
Q Consensus 529 v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~-~~l~~l~~~-~g~tvi~-~h~~~~i~~~~D~v 605 (846)
+..++... .+|+++++|||++|+|+..+..+. .+++.+ .+ .|.++|+ ||+. ++.+.+|+.
T Consensus 69 l~~~l~~~---------------~~~~llllDEp~~g~d~~~~~~~~~~~l~~l-~~~~~~~iii~TH~~-~l~~~~~~~ 131 (185)
T smart00534 69 TANILKNA---------------TENSLVLLDELGRGTSTYDGVAIAAAVLEYL-LEKIGALTLFATHYH-ELTKLADEH 131 (185)
T ss_pred HHHHHHhC---------------CCCeEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCeEEEEecHH-HHHHHhhcC
Confidence 33333321 479999999999999999887765 566777 55 4888888 9988 577788753
No 423
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.20 E-value=5.3e-11 Score=146.49 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=94.3
Q ss_pred CHHHHHHHHHhhhcCCC---C---CHHHHHHHHHHHHHHcCCCcc-cccccCCccC-------------CCC--cEEEEe
Q 048695 503 SVSESIQFSAALRVGKT---V---NAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY-------------HCP--SILLLE 560 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~---~---~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-------------~~P--~iLlLD 560 (846)
||.|.+.|.-.+..+.. . -.++..++++ .|+.+||.++ .|+.+.+||+ .+| ++++||
T Consensus 438 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILD 516 (943)
T PRK00349 438 SIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLD 516 (943)
T ss_pred cHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEec
Confidence 99999998544422110 0 0123445564 6889999877 7999999998 554 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRGS 622 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~~ 622 (846)
|||+|||+..+..++++|+++ ++.|.|||+ +|+.+++. .+|++++| + +|++++.|++++
T Consensus 517 EPtagLd~~~~~~L~~~L~~L-~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~-~G~iv~~g~~~e 582 (943)
T PRK00349 517 EPSIGLHQRDNDRLIETLKHL-RDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVH-GGEVVASGTPEE 582 (943)
T ss_pred CCccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCC-CCEEeeccCHHH
Confidence 999999999999999999999 778999999 99999875 69999999 7 999999998754
No 424
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=8.9e-11 Score=144.23 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=91.8
Q ss_pred CHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHHHcCCCcc-cccccCCccC-------------CC--CcEEEEe
Q 048695 503 SVSESIQFSAALRVGKTVN------AMRRHIHVELVLNQLGLLPY-SNQLVGSLHY-------------HC--PSILLLE 560 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~------~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-------------~~--P~iLlLD 560 (846)
||.|.+.|...+....... .++..+++ +.|+.+||... .++.+.+||| .+ |++++||
T Consensus 436 ~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILD 514 (924)
T TIGR00630 436 SIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLD 514 (924)
T ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 8999999876653221000 01222333 33777899876 7999999998 45 4899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
|||+|||+..+..+++.|+++ ++.|.|||+ +|+.+++. .||++++| + +|++++.|++.
T Consensus 515 EPtagLD~~~~~~L~~~L~~L-~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~-~G~Iv~~g~~~ 579 (924)
T TIGR00630 515 EPSIGLHQRDNERLINTLKRL-RDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIH-GGEVVASGTPE 579 (924)
T ss_pred CCccCCCHHHHHHHHHHHHHH-HhCCCEEEEEECCHHHHh-hCCEEEEecccccCC-CCEEeeccCHH
Confidence 999999999999999999999 778999999 99998875 89999999 7 99999999874
No 425
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=2.4e-10 Score=119.05 Aligned_cols=138 Identities=19% Similarity=0.125 Sum_probs=88.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC-eEEEEEeccCcCCCC-CHHHHHHHHHhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV-LLLCYVEKLDAHQTY-SVSESIQFSAAL 514 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G-~~igyv~Q~~~~~~~-TV~E~l~f~a~l 514 (846)
++.+-+|+++..++|++++|.||||+||||+++++++..- ..|.-.-.. ..++++ |.++.. ...|++..+.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~---~~i~~~~~~~d~~~~~~-- 90 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLV---DRIFTRIGARDDIMKGE-- 90 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccc---cEEEEecCcccccccCc--
Confidence 4578999999999999999999999999999999988632 222110000 112221 111111 2223332110
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhc-CcEEEE-
Q 048695 515 RVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNI-LSLCQIRS-GHYCLS- 591 (846)
Q Consensus 515 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~-g~tvi~- 591 (846)
+ +-.....++.++++.. .+|+++++|||.+|+|+.....+... ++.+ .+. +.++++
T Consensus 91 ----S-tF~~e~~~~~~il~~~---------------~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L-~~~~~~~~i~~ 149 (218)
T cd03286 91 ----S-TFMVELSETANILRHA---------------TPDSLVILDELGRGTSTHDGYAIAHAVLEYL-VKKVKCLTLFS 149 (218)
T ss_pred ----c-hHHHHHHHHHHHHHhC---------------CCCeEEEEecccCCCCchHHHHHHHHHHHHH-HHhcCCcEEEE
Confidence 0 0011112344444432 56899999999999999999998887 7888 454 888888
Q ss_pred ecChhhHHhhc
Q 048695 592 NTPYARTVPFF 602 (846)
Q Consensus 592 ~h~~~~i~~~~ 602 (846)
||+.+.+..+.
T Consensus 150 TH~~el~~~~~ 160 (218)
T cd03286 150 THYHSLCDEFH 160 (218)
T ss_pred eccHHHHHHhh
Confidence 99988776654
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.16 E-value=7.6e-11 Score=143.33 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=86.2
Q ss_pred ceeeEEeCC-eEEEEEcCCCCChhhHHHHHcCCc--cccc-eEEEcC-eEEEEEeccCcCCC-C-CHHHHHH-HHHhhhc
Q 048695 445 YVTCYAKPQ-NMFALLGGSRTSKVTLLQCLAERI--PFTG-SLNGNV-LLLCYVEKLDAHQT-Y-SVSESIQ-FSAALRV 516 (846)
Q Consensus 445 ~vs~~v~~G-e~~al~GpsGaGKSTLL~~LaG~~--~~~G-~I~~~G-~~igyv~Q~~~~~~-~-TV~E~l~-f~a~lr~ 516 (846)
.+|+.+.+| ++++|.||||+|||||||+|+|.. +..| .|-.+- ..++|..|...... . ++.+++. |+..++
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~- 391 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMK- 391 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHH-
Confidence 368888877 899999999999999999999983 3555 333322 34566655433222 2 5555543 222111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhhcCcEEEE-ecC
Q 048695 517 GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI-LNILSLCQIRSGHYCLS-NTP 594 (846)
Q Consensus 517 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~-~h~ 594 (846)
++..++..+ .+|+++|+|||++|+|+.....+ ..+++.+ ++.|.++|+ ||+
T Consensus 392 -----------~~~~il~~~---------------~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l-~~~g~~viitTH~ 444 (771)
T TIGR01069 392 -----------NISAILSKT---------------TENSLVLFDELGAGTDPDEGSALAISILEYL-LKQNAQVLITTHY 444 (771)
T ss_pred -----------HHHHHHHhc---------------CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEECCh
Confidence 122233221 46899999999999999999998 5788888 677888888 888
Q ss_pred hhh
Q 048695 595 YAR 597 (846)
Q Consensus 595 ~~~ 597 (846)
.+.
T Consensus 445 ~eL 447 (771)
T TIGR01069 445 KEL 447 (771)
T ss_pred HHH
Confidence 754
No 427
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.15 E-value=1.8e-10 Score=121.34 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=83.7
Q ss_pred EEeCCeEEEEEcCCCCChhhH-HHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhc-----------
Q 048695 449 YAKPQNMFALLGGSRTSKVTL-LQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRV----------- 516 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTL-L~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~----------- 516 (846)
-+++|+++.|.|+|||||||| ++.+++..+. | ..+.|+..+. |..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g------~~~~yi~~e~-----~~~~~~~~~~~~g~~~~~~~~~~~l 87 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-G------YSVSYVSTQL-----TTTEFIKQMMSLGYDINKKLISGKL 87 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-C------CcEEEEeCCC-----CHHHHHHHHHHhCCchHHHhhcCcE
Confidence 479999999999999999999 7888876531 2 2344554321 34444443322110
Q ss_pred ------CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHhhcC
Q 048695 517 ------GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGV----DTIGTLTILNILSLCQIRSG 586 (846)
Q Consensus 517 ------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g 586 (846)
|......+.+..++++++... ..+|+++++||||+++ |+...+.+++.++++ ++.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~il~~~~-------------~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l-~~~g 153 (230)
T PRK08533 88 LYIPVYPLLSGNSEKRKFLKKLMNTRR-------------FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRI-SSLN 153 (230)
T ss_pred EEEEecccccChHHHHHHHHHHHHHHH-------------hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHH-HhCC
Confidence 000001111222222222211 1579999999999999 888889999999999 6678
Q ss_pred cEEEEecChhh--------HHhhcCEEEEEc
Q 048695 587 HYCLSNTPYAR--------TVPFFDLALILT 609 (846)
Q Consensus 587 ~tvi~~h~~~~--------i~~~~D~vllL~ 609 (846)
.|+++||+... +..++|-++.|+
T Consensus 154 ~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 154 KVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88877443322 234567777776
No 428
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=2.1e-10 Score=123.94 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhHHhhc---CEEEEEccCCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFF---DLALILTKEGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~---D~vllL~~~G~~ 614 (846)
.+|+++++||||++||+..+..+.+.++++ . .+++.+|+.+.+...+ ++++.++ +|++
T Consensus 209 ~~~~illlDEp~a~LD~~~~~~l~~~l~~~-~---q~ii~~~~~~~~~~~~~~~~~i~~l~-~g~i 269 (270)
T cd03242 209 GEYPVLLLDDVLAELDLGRQAALLDAIEGR-V---QTFVTTTDLADFDALWLRRAQIFRVD-AGTL 269 (270)
T ss_pred CCCcEEEEcCcchhcCHHHHHHHHHHhhcC-C---CEEEEeCCchhccchhccCccEEEEe-CcEE
Confidence 399999999999999999999999999876 2 4555555556676777 7899998 8885
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.04 E-value=9.4e-10 Score=120.00 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=125.0
Q ss_pred CcceeeceeeEEeCC-----eEEEEEcCCCCChhhHHHHHcCCc-c-ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHH
Q 048695 439 STPLFSYVTCYAKPQ-----NMFALLGGSRTSKVTLLQCLAERI-P-FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQF 510 (846)
Q Consensus 439 ~~~iL~~vs~~v~~G-----e~~al~GpsGaGKSTLL~~LaG~~-~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f 510 (846)
.+..+.+..+.++.| |++..+|.||.||||++++++|++ | ..|+|-. -.++|=||.-.--.. |||+.+.-
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--lnVSykpqkispK~~~tvR~ll~~ 425 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--LNVSYKPQKISPKREGTVRQLLHT 425 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--cceeccccccCccccchHHHHHHH
Confidence 344556666666666 578999999999999999999987 4 5566643 248899997544334 99987763
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048695 511 SAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTILNI 577 (846)
Q Consensus 511 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i~~~ 577 (846)
+.| +.-.....+.++++-|.+++..|+-+.+||| ...++.+.|||.+-||+..+...-+.
T Consensus 426 --kIr-----~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askv 498 (592)
T KOG0063|consen 426 --KIR-----DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKV 498 (592)
T ss_pred --HhH-----hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHH
Confidence 222 1112235788999999999999999999998 56689999999999999999999898
Q ss_pred HHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 578 LSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 578 l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
+++.--+.++|-.+ .||.-.+--++||+++-.
T Consensus 499 ikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 499 IKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 88874555677666 999877777899998876
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.92 E-value=2.1e-09 Score=118.30 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=87.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eEEEEEeccC-cCCCC-CHHHHHHHHH
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LLLCYVEKLD-AHQTY-SVSESIQFSA 512 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~igyv~Q~~-~~~~~-TV~E~l~f~a 512 (846)
=+++.+++|+.++|.||+|||||||+++|++..| ..|.+.+.. ..+.++.+.. .-... |..+.+..+
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~- 214 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC- 214 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH-
Confidence 3667899999999999999999999999999987 666666654 1222222211 00111 222222211
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCc-EEEE
Q 048695 513 ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGH-YCLS 591 (846)
Q Consensus 513 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~-tvi~ 591 (846)
|. .+|+++++|||.+ .++++.++.+ . .|. +++.
T Consensus 215 --------------------Lr-----------------~~pd~ii~gE~r~-------~e~~~~l~a~-~-~g~~~~i~ 248 (308)
T TIGR02788 215 --------------------LR-----------------MRPDRIILGELRG-------DEAFDFIRAV-N-TGHPGSIT 248 (308)
T ss_pred --------------------hc-----------------CCCCeEEEeccCC-------HHHHHHHHHH-h-cCCCeEEE
Confidence 11 6899999999996 4566777776 4 454 5567
Q ss_pred -ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 592 -NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 592 -~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|..+ +....||+..|. .|+....|.+.
T Consensus 249 T~Ha~~-~~~~~~Rl~~l~-~~~~~~~g~~~ 277 (308)
T TIGR02788 249 TLHAGS-PEEAFEQLALMV-KSSQAGLGLDF 277 (308)
T ss_pred EEeCCC-HHHHHHHHHHHh-hccccccCCCH
Confidence 77776 566699999998 88888888773
No 431
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.91 E-value=6.6e-09 Score=107.62 Aligned_cols=147 Identities=16% Similarity=-0.001 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEV 239 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~ 239 (846)
+++.+++++.+...+..++++++...+.|++.|+... +++.+++ .+++..++..++..+++++.++...
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~----~~~~~~l-------~~~l~~~~~~~lg~~l~~~~~~~~~ 126 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA----HPPATFG-------FAILTSLTFMAIIQFLVALFGNVGR 126 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC----CHHHHHH-------HHHHHHHHHHHHHHHHHHHhCcchH
Confidence 3467799999999999999999999999999999752 4666666 7788889999999999999997644
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHHHHH
Q 048695 240 GNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLPYAI 319 (846)
Q Consensus 240 A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~~~i 319 (846)
.++.+.+...++++|...|.+.||.|++|+.+++|+.|+.+++-...+.+ .....|.++++
T Consensus 127 --~~~~~~~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~-----------------~~~~~~~~~~~ 187 (208)
T TIGR03062 127 --FLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG-----------------NDGTLWQAVAV 187 (208)
T ss_pred --HHHHHHHHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC-----------------cHHHHHHHHHH
Confidence 34444445556678988999999999999999999999998875444321 12235788999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 048695 320 LLGWTVLANFLALLGRR 336 (846)
Q Consensus 320 l~~~~~~~~~~~~~~~~ 336 (846)
++++.+++.+++....+
T Consensus 188 L~~~~~v~~~la~~~~~ 204 (208)
T TIGR03062 188 LLLILVVFLALSLLSAR 204 (208)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988888877654
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.90 E-value=2.1e-09 Score=112.32 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=84.2
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHH---cCCcc--------ccceEEEcC-------eEEEEEeccCcCC----C
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCL---AERIP--------FTGSLNGNV-------LLLCYVEKLDAHQ----T 501 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~L---aG~~~--------~~G~I~~~G-------~~igyv~Q~~~~~----~ 501 (846)
+...+.+.+| +++|+||||+||||++.+| .|..+ .+.-|.-.+ ..+....++.... .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566677665 9999999999999999999 24211 111122211 1222222222110 0
Q ss_pred C--CHHHHHHHH--HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------------CCCcEEEEe
Q 048695 502 Y--SVSESIQFS--AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-----------------HCPSILLLE 560 (846)
Q Consensus 502 ~--TV~E~l~f~--a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-----------------~~P~iLlLD 560 (846)
. .+...+.-. ...+.. + .....+.+.+.++..++... .+|| .+.++++||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in-~--~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilD 165 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKIN-G--KKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILD 165 (220)
T ss_dssp SEEEEEEEEETTS-EEEEET-T--EEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEE
T ss_pred cccccccccccccccccccc-c--cccccccccccccccccccc------cccccccccccccccccccccccccccccc
Confidence 0 110000000 000000 0 11123456666776666543 5565 567799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhHHhhcCEEEEEc
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLALILT 609 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~vllL~ 609 (846)
||.++||...+..+.++|+++ .++.+.||+||+. ..++.+|+.+.+.
T Consensus 166 Evd~~LD~~~~~~l~~~l~~~-~~~~Q~ii~Th~~-~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 166 EVDAALDEQNRKRLADLLKEL-SKQSQFIITTHNP-EMFEDADKLIGVT 212 (220)
T ss_dssp STTTTS-HHHHHHHHHHHHHH-TTTSEEEEE-S-H-HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccc-ccccccccccccc-ccccccccccccc
Confidence 999999999999999999998 5555555448874 5778889888765
No 433
>PRK00064 recF recombination protein F; Reviewed
Probab=98.86 E-value=4.6e-08 Score=109.99 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhc--CEEEEEccCCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFF--DLALILTKEGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~--D~vllL~~~G~~ 614 (846)
.+|+||+||||+++||+..+..+++.+.++ +..+++ +|+.+.+...+ ++++.++ +|++
T Consensus 299 ~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~~~~i~~v~-~G~i 359 (361)
T PRK00064 299 GEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLENAKIFHVE-QGKI 359 (361)
T ss_pred CCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhhccCcEEEEe-CCEE
Confidence 489999999999999999999999988765 235566 66666665554 4788998 8886
No 434
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=100.02 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=44.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+--+.+||||-++|.+.-+.+++..|+++ ++.|.-+|+ ||.+-.+.----+|+-++
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~l-a~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDL-ADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHH-HhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 778899999999999999999999999999 888888888 886533222233455455
No 435
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.76 E-value=3e-08 Score=103.26 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHH
Q 048695 552 HCPSILLLEEPL-----SGVDTIGTLTILNILSLC 581 (846)
Q Consensus 552 ~~P~iLlLDEPT-----sgLD~~~~~~i~~~l~~l 581 (846)
.+|+++++|||| +|||+..++.+.+.++++
T Consensus 169 ~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 169 NDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred hcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 899999999999 999999999999999998
No 436
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.76 E-value=1.8e-07 Score=115.60 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH---------hhcCEEEEEccCCEEEEecC
Q 048695 552 HCPSILLLEEPLSGV-DTIGTLTILNILSLCQIRSGHYCLS-NTPYARTV---------PFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 ~~P~iLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~---------~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|+++++|||+.+| |+..+..+.+.++++ ++.|.++++ ||+.+++. +.||+.++|. +|+....|.
T Consensus 651 ~~p~illlDE~~~~L~d~~~~~~i~~~lk~~-RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~-n~~a~~~~~ 727 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHPVFRDKIREWLKVL-RKANCAVVLATQSISDAERSGIIDVLKESCPTKICLP-NGAAREPGT 727 (818)
T ss_pred CCCcEEEEECchhhcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECC-Cccccccch
Confidence 689999999999999 799999999999999 778888888 99998876 6899999998 888766553
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.76 E-value=8.5e-09 Score=125.96 Aligned_cols=135 Identities=15% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc--cccc-eEEEcC-eEEEEEeccCcCCC-C-CHHHHHH-HHHhhhcCCCCCHHH
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI--PFTG-SLNGNV-LLLCYVEKLDAHQT-Y-SVSESIQ-FSAALRVGKTVNAMR 524 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G-~I~~~G-~~igyv~Q~~~~~~-~-TV~E~l~-f~a~lr~~~~~~~~~ 524 (846)
.+.++.|.|||++||||+||.++... ...| -|-... ..++++.+-..... . ++.+++. |+..+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m---------- 395 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHM---------- 395 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHH----------
Confidence 45789999999999999999996542 2222 111110 12333333211111 1 3433332 22211
Q ss_pred HHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCcEEEE-ecChhhHHhhc
Q 048695 525 RHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILN-ILSLCQIRSGHYCLS-NTPYARTVPFF 602 (846)
Q Consensus 525 ~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~-~h~~~~i~~~~ 602 (846)
.....++..+ .+|+++|+|||++|+|+.....+.. +++.+ .+.|.++|+ ||+.+.....+
T Consensus 396 --~~~~~Il~~~---------------~~~sLvLlDE~~~GtDp~eg~ala~aile~l-~~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 396 --TNIVRILEKA---------------DKNSLVLFDELGAGTDPDEGAALAISILEYL-RKRGAKIIATTHYKELKALMY 457 (782)
T ss_pred --HHHHHHHHhC---------------CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECChHHHHHHHh
Confidence 1122333322 4688999999999999999988864 67777 667888888 99987776667
Q ss_pred CEEEEEccCCEEEE
Q 048695 603 DLALILTKEGHQAY 616 (846)
Q Consensus 603 D~vllL~~~G~~v~ 616 (846)
|+..+.. +.+.+
T Consensus 458 ~~~~v~~--~~~~~ 469 (782)
T PRK00409 458 NREGVEN--ASVEF 469 (782)
T ss_pred cCCCeEE--EEEEE
Confidence 7665543 45554
No 438
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.75 E-value=5.1e-08 Score=103.03 Aligned_cols=147 Identities=16% Similarity=-0.038 Sum_probs=119.2
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEV 239 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~ 239 (846)
+++.+.+++.+..++..+++.+++.++.|++.++... .++..++ ..++.+.+..++..++++++++.+.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~~~~-------~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS----GVIPTLV-------LAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4678999999999999999999999999988776542 2333333 5566677889999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHHHHH
Q 048695 240 GNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLPYAI 319 (846)
Q Consensus 240 A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~~~i 319 (846)
++.+..++...+..++|..+|.+.+|+|++|+.++||+.|+.+++-.... ++ ....+.|.++++
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~---------------~~~~~~~~~~~~ 220 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GV---------------SPTFPLEQDLLV 220 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CC---------------CcccchHHHHHH
Confidence 99999999999999999999999999999999999999999987542222 11 012346788999
Q ss_pred HHHHHHHHHHHHHH
Q 048695 320 LLGWTVLANFLALL 333 (846)
Q Consensus 320 l~~~~~~~~~~~~~ 333 (846)
++++.+.+..++..
T Consensus 221 l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 221 LTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887764
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.72 E-value=7.5e-09 Score=113.11 Aligned_cols=147 Identities=19% Similarity=0.156 Sum_probs=107.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc-----eEE------EcC-eEEEE-------------EeccCcCCCC-
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG-----SLN------GNV-LLLCY-------------VEKLDAHQTY- 502 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G-----~I~------~~G-~~igy-------------v~Q~~~~~~~- 502 (846)
-+||++.+++|.||-||||-|++|+|.++ .-| -.. +.| ..-+| =+|.-.+.|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 36899999999999999999999999874 212 111 111 00011 1111111110
Q ss_pred ---CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCC
Q 048695 503 ---SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGV 566 (846)
Q Consensus 503 ---TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgL 566 (846)
+|.+.|. +...+...+++++.++|.+..++-+..+|| ++.++..+|||.+-|
T Consensus 177 ~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 177 VKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 2222221 222233677889999999999999999998 899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 567 DTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 567 D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
|...+..-...+|.+ -.-.+-||+ .||++.+.-+.|-+..|.
T Consensus 245 DVKQRLkaA~~IRsl-~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSL-INPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhHHHHHHHh-hCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999999999999999 666777888 999999988999998886
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.71 E-value=5.2e-08 Score=98.75 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=50.0
Q ss_pred CCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhhcCcEEEE-ecChhh---------HHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGVD---TIGTLTILNILSLCQIRSGHYCLS-NTPYAR---------TVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~---------i~~~~D~vllL~ 609 (846)
.+|+++++|||++.+| ...+..+.+.++.+ ++.|.|+|+ +|+... +..++|.++.|+
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l-~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL-KRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH-HHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 6899999999999999 88888899999999 777999988 776654 678899999997
No 441
>PRK13695 putative NTPase; Provisional
Probab=98.67 E-value=7.6e-09 Score=104.21 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 HCPSILLLEEP--LSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 ~~P~iLlLDEP--TsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++|++||| +.++| ..+.+.+.++ .+.|.++|+ +|+. .+...+|++..+. +|++...-+
T Consensus 95 ~~~~~lllDE~~~~e~~~----~~~~~~l~~~-~~~~~~~i~v~h~~-~~~~~~~~i~~~~-~~~i~~~~~ 158 (174)
T PRK13695 95 EEADVIIIDEIGKMELKS----PKFVKAVEEV-LDSEKPVIATLHRR-SVHPFVQEIKSRP-GGRVYELTP 158 (174)
T ss_pred CCCCEEEEECCCcchhhh----HHHHHHHHHH-HhCCCeEEEEECch-hhHHHHHHHhccC-CcEEEEEcc
Confidence 68999999995 33444 4456777777 467899999 8884 5667899999999 999977643
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=4.8e-08 Score=112.24 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=68.7
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcCC
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVGK 518 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~ 518 (846)
.++++.+..+++|++++++||||+||||++..|+++.. ..|. ++++++.+|. .. ++.|+|.+.+.++
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----~kV~LI~~Dt---~RigA~EQLr~~Aeil--- 312 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----SKVALLTTDS---YRIGGHEQLRIYGKIL--- 312 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----CeEEEEeCCc---cchhHHHHHHHHHHHh---
Confidence 35667777788999999999999999999999999874 5553 3568898875 34 8999999988765
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 048695 519 TVNAMRRHIHVELVLNQLGLLPYSNQLVGS 548 (846)
Q Consensus 519 ~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~ 548 (846)
+++........+..++..+|.+....++.+
T Consensus 313 GVpv~~~~~~~Dl~~aL~~L~d~d~VLIDT 342 (484)
T PRK06995 313 GVPVHAVKDAADLRLALSELRNKHIVLIDT 342 (484)
T ss_pred CCCeeccCCchhHHHHHHhccCCCeEEeCC
Confidence 233222223344555666776654444444
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.61 E-value=2.3e-08 Score=112.98 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.5
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccc-eEEEcCe
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTG-SLNGNVL 488 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G-~I~~~G~ 488 (846)
+.+|++||+++++||+++|+|||||||||||+ +|+. |.+| +|.++|+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 46899999999999999999999999999999 5655 5666 8999983
No 444
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.59 E-value=3.9e-07 Score=96.09 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=105.5
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcC---C
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISS---I 236 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~---~ 236 (846)
+++.+.+++.+..++..+++.+++. +++++.|++... ..+..++ ...+......+++.+++++++ +
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAG---GALTALT-------LGAVIIALGTALFAALGLVAGGTLQ 145 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCC---chHHHHH-------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5788899998888888777766664 556678987642 2332222 334444555566666777764 4
Q ss_pred hhhhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHH
Q 048695 237 PEVGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLP 316 (846)
Q Consensus 237 ~~~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~ 316 (846)
.+.+..++.+....+.++||...|.+.||.|++|+.+++|+.|+.+++-. .+.++ ......|.+
T Consensus 146 ~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~-~~~~~---------------~~~~~~~~~ 209 (232)
T TIGR00025 146 AEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQ-AATVS---------------VDTFGAVRD 209 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHH-HHcCC---------------CChhhHHHH
Confidence 44557788888888889999999999999999999999999999987532 12111 023446788
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 048695 317 YAILLGWTVLANFLALLGR 335 (846)
Q Consensus 317 ~~il~~~~~~~~~~~~~~~ 335 (846)
+++++++.+++..++....
T Consensus 210 ~~~l~~~~~v~~~la~~~~ 228 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRL 228 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877776654
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.53 E-value=2.7e-07 Score=95.12 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCC-CCCHHHHHHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGK-TVNAMRRHIHVEL 531 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~ 531 (846)
++.|.||+||||||+++.|++..+ ..|.|......+-+..+... +. .++.. +.....-.+.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~----~~---------i~q~~vg~~~~~~~~~i~~ 69 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKR----SL---------INQREVGLDTLSFENALKA 69 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCcc----ce---------eeecccCCCccCHHHHHHH
Confidence 789999999999999999998875 45665443211111111100 00 00000 0000000001111
Q ss_pred HHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 532 VLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 532 ~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.|. .+|+++++|||. |......+ + +. +..|..++. .|..+.. +..||++.+.
T Consensus 70 aLr-----------------~~pd~ii~gEir---d~e~~~~~---l-~~-a~~G~~v~~t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 70 ALR-----------------QDPDVILVGEMR---DLETIRLA---L-TA-AETGHLVMSTLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred Hhc-----------------CCcCEEEEcCCC---CHHHHHHH---H-HH-HHcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence 111 679999999996 65543332 3 34 567899888 7776654 6689987775
No 446
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.52 E-value=1.5e-06 Score=93.13 Aligned_cols=149 Identities=12% Similarity=-0.012 Sum_probs=109.3
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEV 239 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~ 239 (846)
++..+.+++.+...-..+++.++...+.++ .|..+. ...+..+. .+++..++..+++.++++++++.+.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~---~~~l~~~~-------~~ll~~l~~~~lg~~~a~~~~~~~~ 168 (253)
T TIGR01291 100 TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW---WSLIYILP-------VIALTGLAFASLSMLVAALAPSYAY 168 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh---hhHHHHHH-------HHHHHHHHHHHHHHHHHHHhccHHH
Confidence 467788899888877667776665555544 344332 23333323 5566778888999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHHHHH
Q 048695 240 GNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLPYAI 319 (846)
Q Consensus 240 A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~~~i 319 (846)
+..+..+++..++..||.+.|.+.||.|++++.++||+.|+.+..-...+ ++ .....|.++++
T Consensus 169 ~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~-g~----------------~~~~~~~~~~~ 231 (253)
T TIGR01291 169 FAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVML-GG----------------PGTQVGLHLGA 231 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHh-CC----------------CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977532222 11 11124567888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 048695 320 LLGWTVLANFLALLGRR 336 (846)
Q Consensus 320 l~~~~~~~~~~~~~~~~ 336 (846)
++++.+.+..++....+
T Consensus 232 l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 232 LCLYAVVPFFISAALLR 248 (253)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777665543
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.51 E-value=4.8e-07 Score=88.70 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=34.5
Q ss_pred CCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhH
Q 048695 552 HCPSILLLEEPLS----------GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYART 598 (846)
Q Consensus 552 ~~P~iLlLDEPTs----------gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i 598 (846)
.+|+++++|||++ ++|...+..+.+++... ++.+.++++ +|.....
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 7899999999994 55656667777776666 677999999 7765443
No 448
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.51 E-value=9.2e-08 Score=100.62 Aligned_cols=157 Identities=10% Similarity=-0.065 Sum_probs=83.2
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHc--CCccccceEEEcC-----------eEEEEEeccCcCCCC-CH
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLA--ERIPFTGSLNGNV-----------LLLCYVEKLDAHQTY-SV 504 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~La--G~~~~~G~I~~~G-----------~~igyv~Q~~~~~~~-TV 504 (846)
-.-||.+ .+-+++|++++|.|++|+|||||...++ +..+-.+.+++.. +..|+..|+....+. .+
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i 85 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVI 85 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEE
Confidence 3446664 5789999999999999999999988665 3333333444443 233444432111111 22
Q ss_pred HHHHHHHH--hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048695 505 SESIQFSA--ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQ 582 (846)
Q Consensus 505 ~E~l~f~a--~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~ 582 (846)
.|.+.-.. .... ...+.++..++++++++..++... --.+ -.+..+++|||+ ..++++..|++..
T Consensus 86 ~d~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~-~vvI-----Dsl~~l~~~~~~------~~r~~~~~l~~~l 152 (229)
T TIGR03881 86 IDALMKEKEDEWSL-RELSIEELLNKVIEAKKYLGYGHA-RLVI-----DSMSAFWLDKPA------MARKYSYYLKRVL 152 (229)
T ss_pred EEcccccccccccc-ccCCHHHHHHHHHHHHHhhccCce-EEEe-----cCchhhhccChH------HHHHHHHHHHHHH
Confidence 11110000 0000 123455556666666666553210 0011 123334445553 3344554455544
Q ss_pred hhcCcEEEE-ecChh--------hHHhhcCEEEEEc
Q 048695 583 IRSGHYCLS-NTPYA--------RTVPFFDLALILT 609 (846)
Q Consensus 583 ~~~g~tvi~-~h~~~--------~i~~~~D~vllL~ 609 (846)
++.|.|+++ +|... .+..++|.++.|+
T Consensus 153 ~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 153 NRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 778999999 77532 3456789999887
No 449
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.50 E-value=2.1e-07 Score=94.83 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=52.3
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eEEEEEeccCc--CCCC-CHHHHH
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LLLCYVEKLDA--HQTY-SVSESI 508 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~igyv~Q~~~--~~~~-TV~E~l 508 (846)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+ ..|.|.+.+ ..++++.|.+. ..+. |+.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 4445567789999999999999999999999999986 888888877 34555555432 2344 666666
Q ss_pred HHH
Q 048695 509 QFS 511 (846)
Q Consensus 509 ~f~ 511 (846)
...
T Consensus 94 ~~~ 96 (186)
T cd01130 94 RSA 96 (186)
T ss_pred HHH
Confidence 543
No 450
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=2.9e-07 Score=104.48 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=99.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
.++-++++. .+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ..|.|.+.| |..
T Consensus 130 ~~~r~~i~~-~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iG-------erg-- 194 (432)
T PRK06793 130 AFEREEITD-VFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVG-------ERG-- 194 (432)
T ss_pred chheechhh-ccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCC-------CCc--
Confidence 355556665 443 145788885 9999999999999999999999999999875 667664443 221
Q ss_pred CCCCHHHHHHHHHhhh---------cCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccCCCCcEEEEeCCCCCCCHH
Q 048695 500 QTYSVSESIQFSAALR---------VGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHYHCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr---------~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~ 569 (846)
.+|+|.+....... .....+.-.+.. ...-.+-+. .++++ .++-+|++||||+..|+.
T Consensus 195 --~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r---a~~~a~~iAEyfr~~-------G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 195 --REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR---AAKLATSIAEYFRDQ-------GNNVLLMMDSVTRFADAR 262 (432)
T ss_pred --ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH---HHHHHHHHHHHHHHc-------CCcEEEEecchHHHHHHH
Confidence 15666554322110 001111111111 000011110 11111 577899999999999996
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
++|-..+.+. ...|.+..+ +|.. ++++|.-..+ +|.+...+.
T Consensus 263 --reisl~~~e~-p~~G~~~~~~s~l~----~L~ERag~~~-~GSiT~~~t 305 (432)
T PRK06793 263 --RSVDIAVKEL-PIGGKTLLMESYMK----KLLERSGKTQ-KGSITGIYT 305 (432)
T ss_pred --HHHHHHhcCC-CCCCeeeeeeccch----hHHHHhccCC-CcceEEEEE
Confidence 6666677776 445888888 7743 3344444456 898876554
No 451
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=98.45 E-value=8.4e-09 Score=105.71 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=113.9
Q ss_pred cccChHHH-HHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------
Q 048695 665 SLKNVQYT-NGRLTGCTMIDILMGSLYFRIEYKDIFGVTSHSLCIYMQVILIGVISANNVISQIGTDRI----------- 732 (846)
Q Consensus 665 ~~R~~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~r~----------- 732 (846)
.+||+.+. ..+++..++.++++|.+|.+++ ++.+++ ++.+.++..+...++....+......+||.
T Consensus 14 ~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (210)
T PF01061_consen 14 FWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERERGTLERERASPLY 91 (210)
T ss_pred HHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhhccccccccccccc
Confidence 68999888 8999999999999999999888 345555 667777666655554444444445555544
Q ss_pred -----------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 048695 733 -----------------------------------CSEFMRYWTVVFLFTLCITYFGMMVTFLAPLPTLAAFHVSIVTSI 777 (846)
Q Consensus 733 -----------------------------------~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~ 777 (846)
..+++.+++.+++..++..++|.+++.++++.+.|..+.+.+..+
T Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (210)
T PF01061_consen 92 SPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILLL 171 (210)
T ss_pred cchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhhhhhhhhhcccc
Confidence 112455666677788888999999999999999999999999999
Q ss_pred HHhhccccccccCc-ceeeeecccCCcccCCC
Q 048695 778 WVSASGVVVVLADT-RFYSWIFYCNAKPQLPD 808 (846)
Q Consensus 778 ~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~ 808 (846)
++++||+++|.+.+ +|++|+.|.+|.+|..|
T Consensus 172 ~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~ 203 (210)
T PF01061_consen 172 LFFLSGVFFPLSSLPSWLRWISYLNPLTYAVE 203 (210)
T ss_pred cccceeeecchHHChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 89999999999987654
No 452
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.44 E-value=6.5e-07 Score=102.39 Aligned_cols=159 Identities=17% Similarity=0.075 Sum_probs=96.3
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------------------eEEEEEeccC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------------------LLLCYVEKLD 497 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------------------~~igyv~Q~~ 497 (846)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ..|.+...| +.+-++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 46799999 9999999999999999999999999999875 656554443 1122222221
Q ss_pred cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---CCCcE-EEEeCC--CCCCCHHHH
Q 048695 498 AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---HCPSI-LLLEEP--LSGVDTIGT 571 (846)
Q Consensus 498 ~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---~~P~i-LlLDEP--TsgLD~~~~ 571 (846)
. +..+...-. ...-.+.|.+...|-+-+ -...+++. +.-+| +.+.|| +.|+|+...
T Consensus 229 ~----~p~~r~~~~------------~~a~t~AE~frd~G~~Vl--l~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~ 290 (440)
T TIGR01026 229 Q----SPLLRLKGA------------YVATAIAEYFRDQGKDVL--LLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVF 290 (440)
T ss_pred C----CHHHHHHHH------------HHHHHHHHHHHHCCCCEE--EEEeChHHHHHHHHHHHHhcCCCCcccccChhHH
Confidence 1 111100000 000001111111111000 00011111 11111 344575 459999999
Q ss_pred HHHHHHHHHHHhhcCc-------EEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 572 LTILNILSLCQIRSGH-------YCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~-------tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
..+-+++.+. ...|. ||++ +||+. ...+|++.-+. +|+++.....
T Consensus 291 ~~l~~l~ERa-g~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~-dG~ivLsr~l 343 (440)
T TIGR01026 291 STLPRLLERA-GASGKGSITAFYTVLVEGDDMN--EPIADSVRGIL-DGHIVLSRAL 343 (440)
T ss_pred HHHHHHHHHh-ccCCCCeeeEEEEEEccCcCCC--cchhhhhcccc-ceEEEEecch
Confidence 9999999998 55566 7777 88874 45789999999 9999998876
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.43 E-value=1.5e-06 Score=92.28 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 552 HCPSILLLEEPLS------GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 552 ~~P~iLlLDEPTs------gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
.+|+++++| |++ .+|+.....+++.|++++++.|.+|++ ||...
T Consensus 110 ~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 110 RRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred cCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 589999999 765 479999999999999996677999999 88763
No 454
>PRK14079 recF recombination protein F; Provisional
Probab=98.43 E-value=1.2e-06 Score=97.98 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+|++++||||+++||...+..+++.|.+. . .++|. ++.. ..+|+++.+. +|++.-..|
T Consensus 289 ~~~pilLlDd~~seLD~~~~~~l~~~l~~~-~---q~~it~t~~~----~~~~~~~~~~-~~~~~~~~~ 348 (349)
T PRK14079 289 GEAPVLLVDDFTAELDPRRRGALLALAASL-P---QAIVAGTEAP----PGAALTLRIE-AGVFTPEAP 348 (349)
T ss_pred CCCCEEEEcccchhcCHHHHHHHHHHHhcC-C---cEEEEcCCCC----CCCceEEEEe-ccEecCCCC
Confidence 589999999999999999999999888664 2 34444 5433 5689999999 888754443
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.42 E-value=3.2e-07 Score=96.97 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=83.0
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHcC-CccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLAE-RIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~LaG-~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
..-||.+ .+-+++|+++.|.|++|+|||||...++- ... +|+.+.|+..+. +.++.+.-...+
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-------~g~~~~y~~~e~-----~~~~~~~~~~~~--- 75 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-------QGKKVYVITTEN-----TSKSYLKQMESV--- 75 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-------CCCEEEEEEcCC-----CHHHHHHHHHHC---
Confidence 3455654 56799999999999999999999988752 111 235566666542 233322211111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC------------cccccccCCccCCCCcEEEEeCCCCC---CCHHHHHHHHHHHHHHH
Q 048695 518 KTVNAMRRHIHVELVLNQLGLL------------PYSNQLVGSLHYHCPSILLLEEPLSG---VDTIGTLTILNILSLCQ 582 (846)
Q Consensus 518 ~~~~~~~~~~~v~~~l~~l~L~------------~~~~~~v~~lSg~~P~iLlLDEPTsg---LD~~~~~~i~~~l~~l~ 582 (846)
+.+-.+. ..+..+..+++. +..+.........+|+++++||||+. +|......+++.++.+
T Consensus 76 -g~~~~~~--~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l- 151 (234)
T PRK06067 76 -KIDISDF--FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNL- 151 (234)
T ss_pred -CCChhHH--HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHH-
Confidence 1110000 000000000000 00000000001158999999999964 4555555666667777
Q ss_pred hhcCcEEEE-ecChhh-------HHhhcCEEEEEc
Q 048695 583 IRSGHYCLS-NTPYAR-------TVPFFDLALILT 609 (846)
Q Consensus 583 ~~~g~tvi~-~h~~~~-------i~~~~D~vllL~ 609 (846)
++.|.|+++ +|+... +..++|-++.|+
T Consensus 152 ~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 152 VDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 567888888 776543 456677777776
No 456
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.39 E-value=4.5e-07 Score=83.11 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=46.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccccccccc
Q 048695 306 SQQIAKRPWLPYAILLGWTVLANFLALLGRRNIEFTGASQSLPHLRKTSI 355 (846)
Q Consensus 306 ~~~~~~~~w~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (846)
+++..+|.|||+||+++|+++|++++++++++++....++....++|+++
T Consensus 41 y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r~~~ 90 (103)
T PF06422_consen 41 YGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKRGKA 90 (103)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeCCcc
Confidence 57889999999999999999999999999999999999888888888765
No 457
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.37 E-value=9.6e-06 Score=86.71 Aligned_cols=146 Identities=18% Similarity=0.092 Sum_probs=101.9
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEV 239 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~ 239 (846)
+...+.+++.+...-..+++.++..++.+. .|..... ..++.... .+++...+..++..++++++++.+.
T Consensus 100 ~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~--~~~l~~~~-------~~~l~~~~~~~lgl~la~l~~~~~~ 169 (253)
T TIGR03861 100 PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPV--WGYVSVLP-------ALVLVAFMLGALGLALSNLIRQLEN 169 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCc--hhHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 456667888888877777776665444433 3554432 12322222 4455667788899999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCC---CCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHH
Q 048695 240 GNGLAGLLVSIFLHLSGFAIYPSND---PIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLP 316 (846)
Q Consensus 240 A~~~~~l~~~~~~l~~Gf~I~~~~i---p~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~ 316 (846)
+..+..+++..+...+|.+.|.+.+ |+|++|+.++||+.|..+.+=.. +.++ ..|..
T Consensus 170 ~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~-------------------~~~~~ 229 (253)
T TIGR03861 170 FAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ-------------------LNLPA 229 (253)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-------------------cchhH
Confidence 9988888888888889988887555 88999999999999998775311 1111 13556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 048695 317 YAILLGWTVLANFLALLGR 335 (846)
Q Consensus 317 ~~il~~~~~~~~~~~~~~~ 335 (846)
+.+++++.+++..++....
T Consensus 230 ~~~~~~~~~v~~~~~~~~f 248 (253)
T TIGR03861 230 LGWTLGATTLFTLLAFWGF 248 (253)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6777777777777766654
No 458
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.34 E-value=2.8e-06 Score=105.30 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHh
Q 048695 552 HCPSILLLEEPLSGVD-TIGTLTILNILSLCQIRSGHYCLS-NTPYARTVP 600 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD-~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~ 600 (846)
.+|.++++|||...|| +..+..+.+.++.+ ++.|..+++ ||..+++..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~-RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVL-RKLNTFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHh
Confidence 7899999999999999 88999999999999 788888888 999877553
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=6.7e-07 Score=91.93 Aligned_cols=103 Identities=15% Similarity=0.043 Sum_probs=63.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLN 534 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~ 534 (846)
+++|.||||||||||.++|++.++ . ..+.++.+|+.+.+.+..+......... ..+.....+...+.|+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~-------~~~~v~~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 69 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-N-------PKVVIISQDSYYKDLSHEELEERKNNNY---DHPDAFDFDLLISHLQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-C-------CCeEEEEecccccccccccHHHhccCCC---CCCCcccHHHHHHHHH
Confidence 579999999999999999998762 2 2356677776553334434332211111 1111122234456677
Q ss_pred HcCCCcccccccCCccC----------CCCcEEEEeCCCCCCCH
Q 048695 535 QLGLLPYSNQLVGSLHY----------HCPSILLLEEPLSGVDT 568 (846)
Q Consensus 535 ~l~L~~~~~~~v~~lSg----------~~P~iLlLDEPTsgLD~ 568 (846)
.+...+..+.+.-+.+. .+|+++++|+|..+.++
T Consensus 70 ~l~~~~~~~~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 70 DLKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHCCCCEeccccccccCcccCCceecCCCCEEEEechhhccch
Confidence 66665444443333322 57899999999999986
No 460
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.9e-06 Score=97.02 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
.+|+|||||||+++||+..+..+++.|++. |..+++ +|+.+.+.
T Consensus 301 ~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 301 GEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred CCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 489999999999999999999999999763 567778 77765543
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.30 E-value=9.3e-07 Score=100.42 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=63.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-cc---ceEEEcC------------------eEEEEEecc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FT---GSLNGNV------------------LLLCYVEKL 496 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~---G~I~~~G------------------~~igyv~Q~ 496 (846)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+ .. |.|-.+| ..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46899999 9999999999999999999999999999874 32 4444444 368999999
Q ss_pred CcCCCC-CHHHHHHHHHhhh
Q 048695 497 DAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 497 ~~~~~~-TV~E~l~f~a~lr 515 (846)
+..... ++.|++...+...
T Consensus 221 ~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CChhhhHHHHHHHHHHHHHh
Confidence 988888 9999998877654
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=1.3e-06 Score=99.38 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=62.1
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+..++.++++. .+.. +..+++.++ .+.+||.++|+||||+||||||++|+++.+ ..|.|.+.|
T Consensus 137 p~~~~r~~v~~-~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVET-GLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceE-EcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 34688899998 6642 478899996 999999999999999999999999999974 888888754
Q ss_pred ---------eEEEEEeccCc
Q 048695 488 ---------LLLCYVEKLDA 498 (846)
Q Consensus 488 ---------~~igyv~Q~~~ 498 (846)
+.+++|+|.|.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 46899999764
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.29 E-value=4.2e-06 Score=103.79 Aligned_cols=129 Identities=13% Similarity=0.106 Sum_probs=76.1
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC---------cc-ccceEEEcCeEEEEEeccCcCCCC--CHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER---------IP-FTGSLNGNVLLLCYVEKLDAHQTY--SVSE 506 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~---------~~-~~G~I~~~G~~igyv~Q~~~~~~~--TV~E 506 (846)
+..+-+|+++. ..+.++.|.|||++||||+||.++-. .| .+.+|-+-++...-+...|.+... |
T Consensus 594 ~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~ST--- 669 (854)
T PRK05399 594 EPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRST--- 669 (854)
T ss_pred CceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCccc---
Confidence 34577788887 67789999999999999999997543 13 334443322221222212222111 2
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHh
Q 048695 507 SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP---LSGVDTIGTLTILNILSLCQI 583 (846)
Q Consensus 507 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP---TsgLD~~~~~~i~~~l~~l~~ 583 (846)
|...+ ..+..+|+.. .+++++++||| |+.+|..+ ....+++.+.+
T Consensus 670 ---F~~E~------------~~~~~il~~a---------------t~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~ 717 (854)
T PRK05399 670 ---FMVEM------------TETANILNNA---------------TERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHD 717 (854)
T ss_pred ---HHHHH------------HHHHHHHHhC---------------CCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHh
Confidence 11111 1222333310 57899999999 99999444 45556666623
Q ss_pred hcCcEEEE-ecChhhHHhhcCE
Q 048695 584 RSGHYCLS-NTPYARTVPFFDL 604 (846)
Q Consensus 584 ~~g~tvi~-~h~~~~i~~~~D~ 604 (846)
..|.++++ ||. .++.+++++
T Consensus 718 ~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 718 KIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred cCCceEEEEech-HHHHHHhhh
Confidence 33577777 998 566677764
No 464
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=2.9e-06 Score=90.27 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=44.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLT-ILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~-i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
.+++|.+| ||+.+|+.+... ++ +.++ +..+.|.|+ +|.+.+. ..+|.|.+|+ .|+..
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~la~~-~~~paI~vl~-s~sr~ 212 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRLAER-RIFPAIDILK-SGTRK 212 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHHhhC-CCCCeEEEcC-CCCcc
Confidence 58999988 999999655543 54 5665 446778888 9998765 6799999999 88873
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.26 E-value=3e-06 Score=94.73 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=68.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCC-CCCHHHHH
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGK-TVNAMRRH 526 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~-~~~~~~~~ 526 (846)
.+++.++.|.||+||||||+|++|.+..+ ..|.|......+-+..+... .. .++.. +.....-.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~----~~---------i~q~evg~~~~~~~ 185 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKR----SL---------INQREVGLDTLSFA 185 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCcc----ce---------EEccccCCCCcCHH
Confidence 46788999999999999999999998764 45655432211111000000 00 00000 00000000
Q ss_pred HHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEE
Q 048695 527 IHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLA 605 (846)
Q Consensus 527 ~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~v 605 (846)
+.++.+|. .+|+++++||+. |+.++...++ . +..|..++. .|-.+ +....+|+
T Consensus 186 ~~l~~~lr-----------------~~pd~i~vgEir---d~~~~~~~l~----a-a~tGh~v~~T~Ha~~-~~~~~~Rl 239 (343)
T TIGR01420 186 NALRAALR-----------------EDPDVILIGEMR---DLETVELALT----A-AETGHLVFGTLHTNS-AAQTIERI 239 (343)
T ss_pred HHHHHhhc-----------------cCCCEEEEeCCC---CHHHHHHHHH----H-HHcCCcEEEEEcCCC-HHHHHHHH
Confidence 11111111 789999999997 8888765444 2 577999888 66644 33667888
Q ss_pred EEEc
Q 048695 606 LILT 609 (846)
Q Consensus 606 llL~ 609 (846)
+-|-
T Consensus 240 ~~~~ 243 (343)
T TIGR01420 240 IDVF 243 (343)
T ss_pred HHhc
Confidence 6554
No 466
>PRK15066 inner membrane transport permease; Provisional
Probab=98.25 E-value=1.6e-05 Score=85.33 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=101.6
Q ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChh
Q 048695 159 IFAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPE 238 (846)
Q Consensus 159 y~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~ 238 (846)
.+++.+.+++.+...-..+++.++..++.+...|.... ....++. .+++...+.+....+++++.++.+
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~----~~~~~l~-------~~ll~~~~f~~~gl~~a~~~~~~~ 169 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH----HWGIVLL-------TVLLTAILFSLGGLINAVFAKSFD 169 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHccHH
Confidence 35566667777766555555555544444444455432 1111211 333334444455788888899998
Q ss_pred hhHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHHHH
Q 048695 239 VGNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLPYA 318 (846)
Q Consensus 239 ~A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~~~ 318 (846)
.+..+..+.+..+...+|.+.|.+.+|+|++|+.++||+.|..++.=..-+ +. .....|.+++
T Consensus 170 ~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g~----------------~~~~~~~~l~ 232 (257)
T PRK15066 170 DISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-GI----------------SDVPLWLAFA 232 (257)
T ss_pred HHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-CC----------------CCccHHHHHH
Confidence 889999988888889999999999999999999999999999876531111 11 1112477889
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048695 319 ILLGWTVLANFLALLGRR 336 (846)
Q Consensus 319 il~~~~~~~~~~~~~~~~ 336 (846)
+++++.+++.+++....+
T Consensus 233 ~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 233 VLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888776654
No 467
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.24 E-value=7.7e-06 Score=86.41 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCCCccHHHHhhhcc
Q 048695 742 VVFLFTLCITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPDGPFVWDRLATER 820 (846)
Q Consensus 742 ~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~g~~v~~~~~~~~ 820 (846)
..+++.++..++|.++++.+++.+.++.+.+++..+...+||.++|.+.| +|++|+.+++|.+|..++ .++.+.
T Consensus 132 ~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~--~r~~~~--- 206 (236)
T TIGR01247 132 LAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDG--ARYYLA--- 206 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHH--HHHHHh---
Confidence 34455666788999999999999999999999999999999999999999 999999999999887653 233222
Q ss_pred CCC-CCccchhhHHHHHHHHHHHHHh
Q 048695 821 SLS-YERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 821 ~~~-~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
|-. ..+++.++++++.+.+++.+++
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~l~ 232 (236)
T TIGR01247 207 GVSPTFPLEQDLLVLTLLAVIFVGIA 232 (236)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHH
Confidence 222 4568899999999998887764
No 468
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.18 E-value=1e-05 Score=100.47 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=41.6
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 552 HCPSILLLEEPLSGVD-TIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD-~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
.+|+++++|||+.+|| +..+..+.+.++.+ ++.|.++++ ||+.+++.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~-RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTL-RKKNVSVIFATQSLADID 682 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHH-HHcCCEEEEEECCHHHHh
Confidence 6999999999999999 78899999999999 777888888 99887554
No 469
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.18 E-value=1.2e-06 Score=91.59 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYAR 597 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~ 597 (846)
.++++|||-++|+|..+..+++.|+++ .+.+.-+|+ ||.+..
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~-~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKEL-SKKNIQVIITTHSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHT-GGGSSEEEEEES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhh-CccCCEEEEeCccchh
Confidence 899999999999999999999999988 555777888 998654
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.17 E-value=1.5e-05 Score=85.94 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=91.5
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhh--hc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAAL--RV 516 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~l--r~ 516 (846)
+.+.|+++.+-+++|+++.|.|++|+|||||+..++...-.. .|..+.|+.-+. +..+.+...... ..
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~-----~~~~~~~r~~~~~~~~ 85 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEE-----PVVRTARRLLGQYAGK 85 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEccc-----CHHHHHHHHHHHHhCC
Confidence 456789998999999999999999999999999887543211 134456665433 222222211111 00
Q ss_pred CCCCC---HHHHHHHHHHHHHHcC-CC--cccccccC--CccC-----------CCCcEEEEeCCCCCCCH-------H-
Q 048695 517 GKTVN---AMRRHIHVELVLNQLG-LL--PYSNQLVG--SLHY-----------HCPSILLLEEPLSGVDT-------I- 569 (846)
Q Consensus 517 ~~~~~---~~~~~~~v~~~l~~l~-L~--~~~~~~v~--~lSg-----------~~P~iLlLDEPTsgLD~-------~- 569 (846)
+.... .....+.++++++.+. .. ...+. .+ ++.. .+|+++++|..+.-.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~-~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~ 164 (271)
T cd01122 86 RLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDS-FGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERK 164 (271)
T ss_pred CcccCCccccccHHHHHHHHHHhcCCCcEEEEcC-CCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHH
Confidence 00000 0111223334443332 11 11111 11 1111 58999999998764432 1
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChh----------------------hHHhhcCEEEEEc
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYA----------------------RTVPFFDLALILT 609 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~----------------------~i~~~~D~vllL~ 609 (846)
...+++..|++++++.|.||++ +|... .+...+|.++.|.
T Consensus 165 ~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~ 227 (271)
T cd01122 165 ALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALE 227 (271)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEE
Confidence 2456778888997888999999 76432 3556677777776
No 471
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=3.1e-06 Score=107.89 Aligned_cols=72 Identities=11% Similarity=-0.022 Sum_probs=63.7
Q ss_pred CCCcccccccCCccC-----------------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-e
Q 048695 537 GLLPYSNQLVGSLHY-----------------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-N 592 (846)
Q Consensus 537 ~L~~~~~~~v~~lSg-----------------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~ 592 (846)
++.+..++.+++||| .+|++||+||||+|||+.+...+++.|+++ ++.|++|++ |
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l-~~~g~~i~iis 1017 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI-REGSKMIGIIS 1017 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 344556677888887 179999999999999999999999999999 668999988 9
Q ss_pred cChhhHHhhcCEEEEEc
Q 048695 593 TPYARTVPFFDLALILT 609 (846)
Q Consensus 593 h~~~~i~~~~D~vllL~ 609 (846)
|+.+....++|+|.+++
T Consensus 1018 H~~~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1018 HVPEFRERIPHRILVKK 1034 (1042)
T ss_pred CcHHHHHhhCCEEEEEE
Confidence 99999999999999997
No 472
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.13 E-value=3.2e-05 Score=91.53 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=100.3
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHH------HHHcCCCcc-cccccCCccC--------------CCCc-EEEEe
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELV------LNQLGLLPY-SNQLVGSLHY--------------HCPS-ILLLE 560 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~------l~~l~L~~~-~~~~v~~lSg--------------~~P~-iLlLD 560 (846)
++.|.+.|...+.+.. ..+.-.+..++++ |..+||.-+ .++..++||| .=-. +.+||
T Consensus 430 si~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLD 508 (935)
T COG0178 430 SIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLD 508 (935)
T ss_pred cHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEec
Confidence 8899999887765321 1111111222233 334577653 5788888988 2223 45999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-----CCEEEEecCCCC---ChHHHH-HH
Q 048695 561 EPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-----EGHQAYFGPRGS---NHDIIL-DY 630 (846)
Q Consensus 561 EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-----~G~~v~~G~~~~---~~~~l~-~~ 630 (846)
||+-||-++.-..+++.|++| ++.|-|+|+ .||.+. ...+|+|+=+.| +|++++.|++++ +.+++- .|
T Consensus 509 EPSIGLHqrDn~rLi~tL~~L-RDlGNTviVVEHDedt-i~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~Y 586 (935)
T COG0178 509 EPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDT-IRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQY 586 (935)
T ss_pred CCccCCChhhHHHHHHHHHHH-HhcCCeEEEEecCHHH-HhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHh
Confidence 999999999999999999999 999999999 999754 577999998853 799999999975 233343 34
Q ss_pred HhhCCCCCCCCCCC-CcccceeeeccCC
Q 048695 631 FLLIPKNPRYSKRE-SPVRYITGAVGLG 657 (846)
Q Consensus 631 f~~~~~~~~~~~~~-npa~~~l~~~~~~ 657 (846)
..... ..+.|... .|..-.+++.++.
T Consensus 587 Lsg~~-~i~vP~~rr~~~~~~L~l~gA~ 613 (935)
T COG0178 587 LSGKK-TIEVPKKRRAPNGKWLELKGAR 613 (935)
T ss_pred hcCCc-ccCCcccccCCCCCeEEEeccc
Confidence 44322 12223322 3333256666553
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.09 E-value=7.5e-05 Score=70.26 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcccc--ceEEEcCeEEEEEeccCcCCCCCHHHH-HHHHHhhhcCCCCCHHHHHHH
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPFT--GSLNGNVLLLCYVEKLDAHQTYSVSES-IQFSAALRVGKTVNAMRRHIH 528 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~~--G~I~~~G~~igyv~Q~~~~~~~TV~E~-l~f~a~lr~~~~~~~~~~~~~ 528 (846)
+|..+.|.||+|+||||+++.|++..... +-+.++.... ......... ..... ..........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~~~~~~~~~ 66 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI--------LEEVLDQLLLIIVGG------KKASGSGELR 66 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc--------cccCHHHHHhhhhhc------cCCCCCHHHH
Confidence 36789999999999999999999988644 3444443110 000001100 00000 0000011111
Q ss_pred HHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHhhcCcEEEE-ec
Q 048695 529 VELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILN-----ILSLCQIRSGHYCLS-NT 593 (846)
Q Consensus 529 v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~-----~l~~l~~~~g~tvi~-~h 593 (846)
.+..++...- .+|+++++||+..-.+......... .........+..+|+ +|
T Consensus 67 ~~~~~~~~~~-------------~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 67 LRLALALARK-------------LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHHHh-------------cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 2222222111 3379999999999999988887765 122222455677777 66
No 474
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.08 E-value=2.4e-05 Score=97.32 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHh--hcCEEEEEccCCEEE
Q 048695 552 HCPSILLLEEPLSGV-DTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVP--FFDLALILTKEGHQA 615 (846)
Q Consensus 552 ~~P~iLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~--~~D~vllL~~~G~~v 615 (846)
.+|+++++|||+.+| |+..+..+.+.++.+ ++.|.++++ ||+.+++.+ .++.++-.. +.++.
T Consensus 686 ~~p~illlDE~w~~L~d~~~~~~i~~~lk~~-RK~g~~vil~TQs~~d~~~s~i~~~ilen~-~t~I~ 751 (852)
T PRK13891 686 GQPAVIILDEAWLMLGHPAFRAKIREWLKVL-RKANCLVLMATQSLSDAANSGILDVIVEST-ATKIF 751 (852)
T ss_pred CCCCEEEEeCchhhcCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHhhCchHHHHHHcC-Cccee
Confidence 799999999999999 799999999999999 777888888 999988876 344444333 44444
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.6e-05 Score=88.91 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=47.2
Q ss_pred EEEEeceeeeeeccCCCCCcceee-----------ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFS-----------YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~-----------~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.++|+||+. .|+. ++.+|+ |+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf-~YP~----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTP-LYPN----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeee-cCCC----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 589999999 7862 457886 9999999999999999999999999999998764
No 476
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.03 E-value=3.4e-05 Score=81.43 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCCCccHHHHhhh
Q 048695 743 VFLFTLCITYFGMMVTFLAP---LPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPDGPFVWDRLAT 818 (846)
Q Consensus 743 ~~~~~~~~~~~g~~~~~~~p---~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~g~~v~~~~~~ 818 (846)
..+..+.+..++.+++++++ +.+.+..++.++..+..++||+.+|.+.| .|++|+.+++|.+|..++. ++....
T Consensus 122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~--r~~~~~ 199 (232)
T TIGR00025 122 GAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEAL--RQAATV 199 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHH--HHHHcC
Confidence 33444556667777777664 45555778888888999999999999999 9999999999999987532 333221
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHh
Q 048695 819 ERSLSYERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 819 ~~~~~~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
+-....+|.++++++++.+++..++
T Consensus 200 --~~~~~~~~~~~~~l~~~~~v~~~la 224 (232)
T TIGR00025 200 --SVDTFGAVRDLVVVLAFWVALAALA 224 (232)
T ss_pred --CCChhhHHHHHHHHHHHHHHHHHHH
Confidence 2334557889898888888877654
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=5.1e-06 Score=93.22 Aligned_cols=128 Identities=14% Similarity=0.046 Sum_probs=80.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eEEEEEeccCcCCCCCHHHHHHHH
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LLLCYVEKLDAHQTYSVSESIQFS 511 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~igyv~Q~~~~~~~TV~E~l~f~ 511 (846)
-++.+.-.+++|++++|+|+||+|||||+|.|+|..+ .+|+|.++| +.+++++|...++++....++.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 3566666788999999999999999999999999875 899999876 578899998777766344444332
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHH
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPL-SGVDTIGTLTILNILSLC 581 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPT-sgLD~~~~~~i~~~l~~l 581 (846)
.. ..........+.++.+.+...+|.+. .+|..=+.+.-- .+|+..--..-.++++++
T Consensus 264 ~~-----~~~l~~~f~~~~~~~~~c~f~~c~h~-------~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e~ 322 (356)
T PRK01889 264 DA-----EDGVEETFSDIEELAAQCRFRDCAHE-------AEPGCAVQAAIENGELDERRLQSYRKLQREQ 322 (356)
T ss_pred Cc-----hhhHHHhHHHHHHHHccCCCCCCCCC-------CCCCChHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 10 00011122345556666666666554 223222221111 235555555555666665
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.03 E-value=4.8e-06 Score=97.36 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=96.3
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHc--CCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhh
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLA--ERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALR 515 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~La--G~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr 515 (846)
..-||.+ .+-+.+|.++.|.||+|||||||..-.+ |... -+.-+++ ++ ++ +..+-+.-...+-
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyv-----s~--eE------~~~~l~~~~~~~G 73 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFV-----TF--EE------SPQDIIKNARSFG 73 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE-----EE--ec------CHHHHHHHHHHcC
Confidence 3456665 6789999999999999999999988663 3332 2222222 11 11 2233222222211
Q ss_pred cCCCCCHHHH-------------HHHHHHHHHHcCCCcccccccCCccCCCCcEEEEe---CCCCCCCH--HHHHHHHHH
Q 048695 516 VGKTVNAMRR-------------HIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLE---EPLSGVDT--IGTLTILNI 577 (846)
Q Consensus 516 ~~~~~~~~~~-------------~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLD---EPTsgLD~--~~~~~i~~~ 577 (846)
.+-++. ....+.+++.+++++..++....+|+.+|+.+.+| ......|. ..+..++++
T Consensus 74 ----~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~L 149 (484)
T TIGR02655 74 ----WDLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRL 149 (484)
T ss_pred ----CCHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHH
Confidence 110000 01122345566777777888888888899999999 32333443 567889999
Q ss_pred HHHHHhhcCcEEEE-ecChhh--------H-HhhcCEEEEEc
Q 048695 578 LSLCQIRSGHYCLS-NTPYAR--------T-VPFFDLALILT 609 (846)
Q Consensus 578 l~~l~~~~g~tvi~-~h~~~~--------i-~~~~D~vllL~ 609 (846)
++.+ ++.|.|+|+ +|+.++ + ..++|.|+.|+
T Consensus 150 i~~L-~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 150 VARL-KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHH-HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 9999 788999999 887653 2 55799999886
No 479
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.02 E-value=0.00012 Score=77.41 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=72.2
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC---------cc-ccceEEEcCeEEEEEeccCcCCCC-CHHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER---------IP-FTGSLNGNVLLLCYVEKLDAHQTY-SVSES 507 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~---------~~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~ 507 (846)
++.+-+|+.+.-....+..|.|||.+||||+||.++-. .| .+.++-+-++....+..+|..... +
T Consensus 29 ~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S---- 104 (235)
T PF00488_consen 29 KKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLS---- 104 (235)
T ss_dssp SSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSS----
T ss_pred CceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccc----
Confidence 34566776665555569999999999999999988532 24 444554433333333333322222 1
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhh-c
Q 048695 508 IQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILN-ILSLCQIR-S 585 (846)
Q Consensus 508 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~-~l~~l~~~-~ 585 (846)
.|...+ .++..+++.. .+..++|+||+..|=++.....+.. .++.+ .+ .
T Consensus 105 -~F~~E~------------~~~~~il~~~---------------~~~sLvliDE~g~gT~~~eg~ai~~aile~l-~~~~ 155 (235)
T PF00488_consen 105 -TFMAEM------------KRLSSILRNA---------------TEKSLVLIDELGRGTNPEEGIAIAIAILEYL-LEKS 155 (235)
T ss_dssp -HHHHHH------------HHHHHHHHH-----------------TTEEEEEESTTTTSSHHHHHHHHHHHHHHH-HHTT
T ss_pred -cHHHhH------------HHHHhhhhhc---------------ccceeeecccccCCCChhHHHHHHHHHHHHH-HHhc
Confidence 122211 2344555432 2356899999999999988877654 55666 54 4
Q ss_pred CcEEEE-ecChhh
Q 048695 586 GHYCLS-NTPYAR 597 (846)
Q Consensus 586 g~tvi~-~h~~~~ 597 (846)
+..+++ ||..+.
T Consensus 156 ~~~~i~~TH~~~l 168 (235)
T PF00488_consen 156 GCFVIIATHFHEL 168 (235)
T ss_dssp T-EEEEEES-GGG
T ss_pred cccEEEEeccchh
Confidence 666777 888754
No 480
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.01 E-value=1.1e-05 Score=91.94 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC------------------eEEEEE-----
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV------------------LLLCYV----- 493 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G------------------~~igyv----- 493 (846)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ..|.|.+.| .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45689998 9999999999999999999999999999874 446666644 134555
Q ss_pred eccCcC--CC---C-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC
Q 048695 494 EKLDAH--QT---Y-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL 539 (846)
Q Consensus 494 ~Q~~~~--~~---~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 539 (846)
+|++.. .+ . ++.|.+.. +........+...++.++++.++|.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~----~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRD----QGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHH----cCCCcchhhhHHHHHHHHHHHhCcC
Confidence 776532 11 1 44444432 2111113356677899999999994
No 481
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=1e-05 Score=94.04 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=51.7
Q ss_pred EeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC
Q 048695 424 FEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV 487 (846)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G 487 (846)
.+|++. .++ .+.+++++++.+..|+.++|+||||+|||||++.|.|++| .+|++.+++
T Consensus 187 ~~d~~~-v~G-----q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSD-VIG-----QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEE-EEC-----cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 347777 665 5679999999999999999999999999999999999987 999998887
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.99 E-value=5.8e-06 Score=68.15 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.2
Q ss_pred eeceeeEEeC-CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 443 FSYVTCYAKP-QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 443 L~~vs~~v~~-Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++.++.+.+ |+++.|.|||||||||||++|.=.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445667775 579999999999999999998643
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.98 E-value=1.7e-05 Score=91.80 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=84.2
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
-.-||.+ .+-+.+|+++.|.|++|+|||||+..++.... ..+. +-|+.-+. +..+...-+.++
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k-------vlYvs~EE-----s~~qi~~ra~rl--- 144 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK-------VLYVSGEE-----SLQQIKMRAIRL--- 144 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc-------EEEEECcC-----CHHHHHHHHHHc---
Confidence 3446665 46899999999999999999999999987653 3233 33443221 222211111111
Q ss_pred CCCCHHHH----HHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHhh
Q 048695 518 KTVNAMRR----HIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSG----VD-----TIGTLTILNILSLCQIR 584 (846)
Q Consensus 518 ~~~~~~~~----~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsg----LD-----~~~~~~i~~~l~~l~~~ 584 (846)
+...+.. ...++++++.+ ...+|+++++|.-++= ++ ....++++..|.+++++
T Consensus 145 -g~~~~~l~~~~e~~~~~I~~~i-------------~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~ 210 (454)
T TIGR00416 145 -GLPEPNLYVLSETNWEQICANI-------------EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT 210 (454)
T ss_pred -CCChHHeEEcCCCCHHHHHHHH-------------HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 1110000 00011111111 1167999999976541 11 23345666778888788
Q ss_pred cCcEEEE-ecChhh--------HHhhcCEEEEEccCC
Q 048695 585 SGHYCLS-NTPYAR--------TVPFFDLALILTKEG 612 (846)
Q Consensus 585 ~g~tvi~-~h~~~~--------i~~~~D~vllL~~~G 612 (846)
.|.|+++ +|...+ +..++|.++.|+ ++
T Consensus 211 ~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le-~~ 246 (454)
T TIGR00416 211 RGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE-GD 246 (454)
T ss_pred hCCEEEEEeccccCCccCCcccEeeeceEEEEEe-cc
Confidence 8999999 775544 677899999998 44
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.97 E-value=3.9e-06 Score=84.81 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+||+++|+|+||||||||+++|+|++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999999999874
No 485
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.97 E-value=2.9e-05 Score=87.37 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=81.4
Q ss_pred eeece-eeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCC-
Q 048695 442 LFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGK- 518 (846)
Q Consensus 442 iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~- 518 (846)
-||.+ .+-+.+|+++.|.|++|+|||||+..++.... ..|. +-|+.-+. +..+...-..++....
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~-------VlYvs~EE-----s~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK-------VLYVSGEE-----SPEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe-------EEEEECCc-----CHHHHHHHHHHcCCCcc
Confidence 34444 35789999999999999999999999987654 3233 34443221 2222111111111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCC----CCCC-----HHHHHHHHHHHHHHHhhcCcEE
Q 048695 519 TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPL----SGVD-----TIGTLTILNILSLCQIRSGHYC 589 (846)
Q Consensus 519 ~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPT----sgLD-----~~~~~~i~~~l~~l~~~~g~tv 589 (846)
...- .....++++++.+ ...+|+++++|+-. ..+| ....++++..|++++++.|.++
T Consensus 138 ~l~l-~~e~~le~I~~~i-------------~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itv 203 (372)
T cd01121 138 NLYL-LAETNLEDILASI-------------EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPI 203 (372)
T ss_pred cEEE-EccCcHHHHHHHH-------------HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 0000112222221 11689999999963 2333 2334556677778878889999
Q ss_pred EE-ecChh--------hHHhhcCEEEEEc
Q 048695 590 LS-NTPYA--------RTVPFFDLALILT 609 (846)
Q Consensus 590 i~-~h~~~--------~i~~~~D~vllL~ 609 (846)
++ +|... .+.+++|.++.++
T Consensus 204 ilvghvtk~g~~aG~~~leh~vD~Vi~le 232 (372)
T cd01121 204 FIVGHVTKEGSIAGPKVLEHMVDTVLYFE 232 (372)
T ss_pred EEEeeccCCCcccCcccchhhceEEEEEE
Confidence 99 77443 3678899999997
No 486
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=9.4e-06 Score=92.17 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=58.4
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHH--H
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRR--H 526 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~--~ 526 (846)
+++|++++|+||||+||||+++.|+|+.. ..|. ..++++..+..-. ...|.+.+.+++. +++.... .
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~-----~~v~~i~~d~~ri--galEQL~~~a~il---Gvp~~~v~~~ 257 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGA-----DKVALLTTDSYRI--GGHEQLRIYGKLL---GVSVRSIKDI 257 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----CeEEEEecCCcch--hHHHHHHHHHHHc---CCceecCCCH
Confidence 47899999999999999999999998631 1110 2234444432111 4555566555543 2221110 1
Q ss_pred HHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048695 527 IHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLC 581 (846)
Q Consensus 527 ~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l 581 (846)
......+. ++ .+-++++.|. .|.-.... .+++.++.+
T Consensus 258 ~dl~~al~--~l-------------~~~d~VLIDT--aGrsqrd~-~~~~~l~~l 294 (420)
T PRK14721 258 ADLQLMLH--EL-------------RGKHMVLIDT--VGMSQRDQ-MLAEQIAML 294 (420)
T ss_pred HHHHHHHH--Hh-------------cCCCEEEecC--CCCCcchH-HHHHHHHHH
Confidence 11122222 22 3456788895 58776543 356666666
No 487
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=97.94 E-value=5.6e-05 Score=80.97 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccccccccCc-ceeeeecccCCcccCCCCccHHHHhhhcc
Q 048695 742 VVFLFTLCITYFGMMVTFLAPLPTLAAFHVSIVTSIWVSASGVVVVLADT-RFYSWIFYCNAKPQLPDGPFVWDRLATER 820 (846)
Q Consensus 742 ~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~~~~~~i-~~~~w~~~~~p~~~~~~g~~v~~~~~~~~ 820 (846)
.+++..++..++|.+++.++++.+.+..+..++..+++.+||.+.|.+.| .|++++.+++|.++..|+ +++-+.
T Consensus 144 ~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~--~R~~~~--- 218 (253)
T TIGR01291 144 VIALTGLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDD--IRPVML--- 218 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHH--HHHHHh---
Confidence 34556667788999999999999999999999999999999999999999 999999999999998763 233332
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHh
Q 048695 821 SLSYERIDKDILILSTMCVLFASLA 845 (846)
Q Consensus 821 ~~~~~~~~~~~~~l~~~~v~f~~l~ 845 (846)
|-+..+.+.++++++++.+++..++
T Consensus 219 g~~~~~~~~~~~~l~~~~vv~~~la 243 (253)
T TIGR01291 219 GGPGTQVGLHLGALCLYAVVPFFIS 243 (253)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2222345678888888888777654
No 488
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.92 E-value=1.6e-05 Score=94.81 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=50.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
+|++|++||||+|||+..+..+.+.|+++ ++ |++||+ ||+...+ ..+|++++|+ +|
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l-~~-~~~vi~iTH~~~~~-~~ad~~~~l~-k~ 518 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQL-SE-RHQVLCVTHLPQVA-AHADAHFKVE-KE 518 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-hc-CCEEEEEEChHHHH-HhcCeEEEEE-Ec
Confidence 58999999999999999999999999999 54 799999 9998766 5899999998 54
No 489
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=97.89 E-value=2.8e-05 Score=76.71 Aligned_cols=116 Identities=11% Similarity=-0.063 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 048695 160 FAGSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLSAISSIPEV 239 (846)
Q Consensus 160 ~~~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~iaa~~~~~~~ 239 (846)
+.+.+.+++.+...-..++++++..++.++ .|.+.+ +.+...++ ++.+..+.+.+...+...++...++...
T Consensus 30 ~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~---~~~~~~~~----~~~~~~l~~~~f~~l~~~~a~~~~~~~~ 101 (152)
T TIGR01248 30 HRASALLARIIAETIRAFIGTILILAIALA-LGFRFR---NGVAAALL----FLLIPSIFGIAFAALVMAMALRKEGRFA 101 (152)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC---CcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 568889999999998889998877777754 488764 22221111 1113344556666666666655566544
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHh
Q 048695 240 GNGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILY 284 (846)
Q Consensus 240 A~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al 284 (846)
.+ .+.++.+.+...+|...|.++||+|++|+-++||+.|+.+++
T Consensus 102 ~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 102 ME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 33 456666666677787799999999999999999999998765
No 490
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=2.3e-05 Score=101.12 Aligned_cols=141 Identities=15% Similarity=0.222 Sum_probs=77.2
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcCeEEEEEeccCcCCCC-CHHH-HHHHHHhhhcCCC
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNVLLLCYVEKLDAHQTY-SVSE-SIQFSAALRVGKT 519 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G~~igyv~Q~~~~~~~-TV~E-~l~f~a~lr~~~~ 519 (846)
.-+++..+++++++|.|++|+|||||++++++... ..|.+.+++. ++.+....+.. +..+ +...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~---~v~~~~~~~~~~~~~~~~~~~--------- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA---FISKSMEIYSSANPDDYNMKL--------- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc---ccccchhhcccccccccchhH---------
Confidence 33466778899999999999999999999988763 6788888651 11111000000 1000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCccC---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--hhcCcEEEE-ec
Q 048695 520 VNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---HCPSILLLEEPLSGVDTIGTLTILNILSLCQ--IRSGHYCLS-NT 593 (846)
Q Consensus 520 ~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~--~~~g~tvi~-~h 593 (846)
.-.++.+.++++..++... ..+.+.. .++-+|+||+- |... .++.|+... ...|.+||+ ||
T Consensus 266 ---~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~krvLLVLDdv----~~~~---~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 266 ---HLQRAFLSEILDKKDIKIY---HLGAMEERLKHRKVLIFIDDL----DDQD---VLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred ---HHHHHHHHHHhCCCCcccC---CHHHHHHHHhCCeEEEEEeCC----CCHH---HHHHHHhhCccCCCCcEEEEEeC
Confidence 0011233444444443210 0011111 44557899983 4433 344444431 235888999 99
Q ss_pred ChhhHHhh-cCEEEEEc
Q 048695 594 PYARTVPF-FDLALILT 609 (846)
Q Consensus 594 ~~~~i~~~-~D~vllL~ 609 (846)
+...+... +|+++-+.
T Consensus 333 d~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred cHHHHHhcCCCeEEEec
Confidence 98777554 67766554
No 491
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=97.84 E-value=0.00024 Score=76.01 Aligned_cols=150 Identities=21% Similarity=0.202 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhhccCccccccCCCceeeehhhhhhHHHHHHHHHHHHHHHHHHH-HhcCChhhh
Q 048695 162 GSLFHKLCDEYNQQQMNSALAYTLCVYFLAGLSLVQNGAPFFQYLVLLFEYLILLFLVAYFGSSVFFFLS-AISSIPEVG 240 (846)
Q Consensus 162 ~a~~la~~i~~iP~~~i~~~if~~i~Yfm~Gl~~~~~~~~Ff~f~l~~~~~~~~l~l~~~~~~~~f~~ia-a~~~~~~~A 240 (846)
..+.++..+.......+...+.-.++.+..|.... +.++.... .+.+......++..+++ ...++...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~-------~~~~~~~~~~~lg~~~~~~~~~~~~~~ 200 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFL---GSLLLLLL-------LLLLLLLATVALGLLLSTFAKSQLQCA 200 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CcHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34556666666555555555555566666663322 34544444 55556666666666555 377778888
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCcceehhhhChHHHHHHHhhhhhcCCCCCCCCcccccccccccCCCCChHHHHHH
Q 048695 241 NGLAGLLVSIFLHLSGFAIYPSNDPIYWKWLIYANPIYWANILYCKCQFNEGYTDPCTNFLSVTNSQQIAKRPWLPYAIL 320 (846)
Q Consensus 241 ~~~~~l~~~~~~l~~Gf~I~~~~ip~w~~Wi~~inP~~ya~~al~~nef~~~~~~~C~~~~g~~~~~~~~~~~w~~~~il 320 (846)
..++.+....+..++|...|.+.+|.|++|+.+++|..|+.+++-.....+. .....|.+++++
T Consensus 201 ~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~----------------~~~~~~~~~~~l 264 (286)
T COG0842 201 SAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW----------------RNDGIWISLLIL 264 (286)
T ss_pred HHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC----------------chhhHHHHHHHH
Confidence 8999999999999999999999999999999999999999988753222111 112278889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 048695 321 LGWTVLANFLALLGRRN 337 (846)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (846)
+++.+++.+++....+.
T Consensus 265 ~~~~~v~~~~~~~~~~~ 281 (286)
T COG0842 265 LLFAVVFLLLGLLLLRR 281 (286)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888877654
No 492
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=2.9e-05 Score=97.69 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK 610 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~ 610 (846)
.+|+++++||||+|||+..+..+.+.|+.+ .+.+.+||+ ||+.+ +...||++++|.+
T Consensus 811 ~~~~~lilDEp~~~lD~~~~~~l~~~l~~~-~~~~~~iiiith~~~-~~~~~d~~~~l~~ 868 (880)
T PRK03918 811 GNIPLLILDEPTPFLDEERRRKLVDIMERY-LRKIPQVIIVSHDEE-LKDAADYVIRVSL 868 (880)
T ss_pred CCCCeEEEeCCCcccCHHHHHHHHHHHHHH-HhcCCEEEEEECCHH-HHHhCCeEEEEEe
Confidence 579999999999999999999999999998 566778888 99975 6688999999984
No 493
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.82 E-value=1.4e-05 Score=101.62 Aligned_cols=67 Identities=16% Similarity=-0.022 Sum_probs=57.4
Q ss_pred cccccCCccC-------------C--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 542 SNQLVGSLHY-------------H--------CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 542 ~~~~v~~lSg-------------~--------~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
.++.+++||| . +|++||+||||+|||+.+...+++.|+++ ++.|++|++ ||......
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l-~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL-NASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHCCCEEEEEecHHHHHH
Confidence 4577888888 2 79999999999999999999999999999 778999999 99777666
Q ss_pred hhcCEEEEEc
Q 048695 600 PFFDLALILT 609 (846)
Q Consensus 600 ~~~D~vllL~ 609 (846)
++-.+|.|-+
T Consensus 1022 ~i~~qi~V~k 1031 (1047)
T PRK10246 1022 RIPVQIKVKK 1031 (1047)
T ss_pred hccceEEEEE
Confidence 6666777665
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.80 E-value=6.5e-06 Score=85.37 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=35.1
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQT 501 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~ 501 (846)
++|++++|.||||||||||++.|+++.+. ..++++.|++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccccccC
Confidence 67999999999999999999999998752 23577788876543
No 495
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.79 E-value=2.7e-05 Score=93.02 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=49.3
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 553 CPSILLLEEPL-SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 553 ~P~iLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
+|++|+||||| ++||+.++..+.+.|+++ .|.+||+ ||+.. ....+|++++|.+.|+.
T Consensus 496 ~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~-~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 496 DTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDH-DPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchh-chhhhhcEEEEEEECCe
Confidence 89999999998 789999999999999997 4788888 88854 45779999999854544
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.78 E-value=7.5e-05 Score=89.68 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc-ccce--------EEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHH
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP-FTGS--------LNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAM 523 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~--------I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~ 523 (846)
.+.++|.||||+|||||.++|.+... ..|+ +.+||..+. ....-.++-.++ .. .+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~--------~d~~~i~~~llg-------~~-~~ 238 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR--------WDPREVTNPLLG-------SV-HD 238 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc--------CCHHHHhHHhcC-------Cc-cH
Confidence 45699999999999999999998763 3332 444442221 000111111111 11 12
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048695 524 RRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSL 580 (846)
Q Consensus 524 ~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~ 580 (846)
...+...+.++..|+.+..+..+..+++ .+||||| +..||+..+..+++.|++
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asg---GvL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHG---GVLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCC---CeEEEec-cccCCHHHHHHHHHHHhh
Confidence 2223455678888998777766666553 4999999 899999999999998876
No 497
>PRK13764 ATPase; Provisional
Probab=97.78 E-value=3.8e-05 Score=90.71 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=77.8
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCC-CCCHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQ-TYSVSESIQFSAALRVGKTVNAMRRHIHV 529 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~-~~TV~E~l~f~a~lr~~~~~~~~~~~~~v 529 (846)
+++..+.|.||.||||||++++|+..++..|.+ +..+.+-..+. +..+-+ + . ....+ .....
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~ri------V~TiEDp~El~~~~~i~q---~----~-~~~~~---~~~~~ 317 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKI------VKTMESPRDLQVPPEITQ---Y----S-KLEGS---MEETA 317 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCE------EEEECCCccccCCCcceE---E----e-ecccc---HHHHH
Confidence 456678999999999999999999887654432 22333211110 100000 0 0 00000 01111
Q ss_pred HHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ec---------------
Q 048695 530 ELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NT--------------- 593 (846)
Q Consensus 530 ~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h--------------- 593 (846)
+.+ |. .+|+++++||.-.. .+ ++.+..+ +..|..++. -|
T Consensus 318 ~~l-----LR------------~rPD~IivGEiRd~---Et----~~~~~~l-~~ag~GvigTlHA~sa~~Ai~Rl~~~v 372 (602)
T PRK13764 318 DIL-----LL------------VRPDYTIYDEMRKT---ED----FKIFADM-RLAGVGMVGVVHATRPIDAIQRFIGRV 372 (602)
T ss_pred HHH-----Hh------------hCCCEEEECCCCCH---HH----HHHHHHH-HHcCCeEEEEECCCCHHHHHHHHHhhh
Confidence 111 10 68999999999843 22 4455555 455777777 66
Q ss_pred ChhhHHhhcCEEEEEccCCEE--EEecCC
Q 048695 594 PYARTVPFFDLALILTKEGHQ--AYFGPR 620 (846)
Q Consensus 594 ~~~~i~~~~D~vllL~~~G~~--v~~G~~ 620 (846)
+...+...+|+++.++ +|++ +|.+..
T Consensus 373 ~lg~i~~iID~IV~I~-~G~I~~v~~~~~ 400 (602)
T PRK13764 373 ELGMIPQIVDTVIFIE-DGEVSKVYDLEF 400 (602)
T ss_pred hhchHHHhhcEEEEEe-CCEEEEEEeeee
Confidence 7888888999999999 9999 777764
No 498
>PRK01156 chromosome segregation protein; Provisional
Probab=97.78 E-value=9e-05 Score=93.46 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-C-cEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRS-G-HYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g-~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+|++++|||||+|||+..+..+.++++...+.. | .+||+ ||+...+ ..||+++.+.+.|
T Consensus 824 ~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~~~~ 886 (895)
T PRK01156 824 NDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVKKSS 886 (895)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEEecC
Confidence 5899999999999999999999999998653443 3 47888 9998765 7899999998544
No 499
>PTZ00035 Rad51 protein; Provisional
Probab=97.77 E-value=1.9e-05 Score=87.93 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=74.4
Q ss_pred ceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHcCC--cc-----ccceE-EEcC------eEEEEEeccCcCCCCCHH
Q 048695 441 PLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLAER--IP-----FTGSL-NGNV------LLLCYVEKLDAHQTYSVS 505 (846)
Q Consensus 441 ~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~~-----~~G~I-~~~G------~~igyv~Q~~~~~~~TV~ 505 (846)
.-||.+ .+-+++|+++.|.||||||||||+..++.. +| ..|.+ ++++ +++..+.|...+.+.++.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVL 184 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHh
Confidence 345553 678999999999999999999999988753 23 34555 4444 122233333222222455
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC--------HHHH----HH
Q 048695 506 ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD--------TIGT----LT 573 (846)
Q Consensus 506 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD--------~~~~----~~ 573 (846)
+|+.+.. ..+.++..+.+.++.+.+. ..+++++++|=-|+-.- ...+ .+
T Consensus 185 ~nI~~~~------~~~~e~~~~~l~~~~~~l~-------------~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~ 245 (337)
T PTZ00035 185 DNIAYAR------AYNHEHQMQLLSQAAAKMA-------------EERFALLIVDSATALFRVDYSGRGELAERQQHLGK 245 (337)
T ss_pred hceEEEc------cCCHHHHHHHHHHHHHHhh-------------ccCccEEEEECcHHhhhhhccCcccHHHHHHHHHH
Confidence 5543211 1122222222222222211 14678899997765321 1112 24
Q ss_pred HHHHHHHHHhhcCcEEEE
Q 048695 574 ILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 574 i~~~l~~l~~~~g~tvi~ 591 (846)
++..|++++++.|.+|++
T Consensus 246 ~~~~L~~la~~~~vavvv 263 (337)
T PTZ00035 246 FLRALQKLADEFNVAVVI 263 (337)
T ss_pred HHHHHHHHHHHcCcEEEE
Confidence 566677776678999999
No 500
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.76 E-value=2.4e-05 Score=82.51 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=28.9
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceE
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSL 483 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I 483 (846)
.+..+++|.||||||||||.+.|+++++ .+|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 3467999999999999999999999986 77773
Done!