Query 048695
Match_columns 846
No_of_seqs 581 out of 3652
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 21:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.5E-41 2.2E-45 370.1 23.6 198 419-622 22-250 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-40 3.6E-45 368.3 21.3 192 421-622 4-225 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 2.2E-40 7.6E-45 368.1 22.6 192 421-622 3-220 (381)
4 2pcj_A ABC transporter, lipopr 100.0 1.3E-39 4.4E-44 339.7 24.0 189 420-620 3-223 (224)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-39 4.5E-44 349.1 23.2 194 420-622 6-230 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 1.5E-39 5.3E-44 359.1 24.4 193 420-622 13-232 (355)
7 3tif_A Uncharacterized ABC tra 100.0 1.4E-39 4.7E-44 341.9 22.5 198 421-622 1-231 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 8.2E-40 2.8E-44 349.5 20.2 201 420-632 10-246 (266)
9 2olj_A Amino acid ABC transpor 100.0 2.6E-39 8.8E-44 344.8 23.6 189 421-620 24-243 (263)
10 2it1_A 362AA long hypothetical 100.0 2.4E-39 8.4E-44 358.8 22.6 191 421-621 3-219 (362)
11 1vpl_A ABC transporter, ATP-bi 100.0 4.1E-39 1.4E-43 342.1 23.0 190 421-621 15-231 (256)
12 2yyz_A Sugar ABC transporter, 100.0 1.7E-39 5.9E-44 359.6 20.6 192 421-622 3-220 (359)
13 1b0u_A Histidine permease; ABC 100.0 6.6E-39 2.3E-43 342.0 23.8 189 421-620 6-237 (262)
14 1v43_A Sugar-binding transport 100.0 3.7E-39 1.3E-43 358.5 21.9 191 421-621 11-227 (372)
15 1g6h_A High-affinity branched- 100.0 3.2E-39 1.1E-43 343.6 19.7 193 420-620 6-237 (257)
16 1g29_1 MALK, maltose transport 100.0 1.4E-38 4.9E-43 354.4 25.2 191 421-621 3-225 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 5.8E-39 2E-43 355.4 19.9 192 421-622 3-227 (353)
18 1ji0_A ABC transporter; ATP bi 100.0 7.4E-39 2.5E-43 337.4 19.4 190 420-621 5-224 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-38 4.3E-43 351.6 20.8 188 421-622 1-214 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 7.5E-38 2.6E-42 329.4 17.8 185 421-620 1-211 (240)
21 2d2e_A SUFC protein; ABC-ATPas 100.0 1.5E-37 5.1E-42 329.4 18.3 193 421-621 3-229 (250)
22 2ihy_A ABC transporter, ATP-bi 100.0 1E-37 3.5E-42 335.4 16.8 206 418-631 18-260 (279)
23 2nq2_C Hypothetical ABC transp 100.0 7.1E-37 2.4E-41 324.6 22.8 194 421-622 4-214 (253)
24 2yz2_A Putative ABC transporte 100.0 3.5E-37 1.2E-41 329.4 19.7 193 421-620 2-222 (266)
25 2zu0_C Probable ATP-dependent 100.0 1.1E-36 3.9E-41 325.6 20.8 198 416-621 15-250 (267)
26 2ixe_A Antigen peptide transpo 100.0 9.3E-37 3.2E-41 326.8 17.2 193 420-621 15-241 (271)
27 2qi9_C Vitamin B12 import ATP- 100.0 3.8E-36 1.3E-40 318.0 18.9 182 420-622 3-219 (249)
28 1sgw_A Putative ABC transporte 100.0 3E-36 1E-40 311.5 13.5 179 420-614 9-210 (214)
29 2ff7_A Alpha-hemolysin translo 100.0 1.2E-35 3.9E-40 314.2 17.3 183 421-620 7-227 (247)
30 2pjz_A Hypothetical protein ST 100.0 3.8E-35 1.3E-39 312.6 17.5 183 421-620 1-210 (263)
31 3nh6_A ATP-binding cassette SU 100.0 2.3E-35 7.7E-40 320.3 15.0 183 421-621 53-273 (306)
32 1mv5_A LMRA, multidrug resista 100.0 1.4E-35 4.9E-40 312.9 12.0 184 421-621 1-222 (243)
33 2ghi_A Transport protein; mult 100.0 1.8E-34 6E-39 307.4 17.0 185 421-621 17-238 (260)
34 2pze_A Cystic fibrosis transme 100.0 2.1E-34 7.2E-39 301.3 17.2 182 420-620 5-213 (229)
35 3gd7_A Fusion complex of cysti 100.0 1.1E-34 3.8E-39 324.5 12.6 185 420-622 18-239 (390)
36 2cbz_A Multidrug resistance-as 100.0 8.5E-34 2.9E-38 298.1 15.5 184 421-621 3-213 (237)
37 2yl4_A ATP-binding cassette SU 100.0 2E-32 6.9E-37 324.7 18.2 188 422-622 342-567 (595)
38 3qf4_A ABC transporter, ATP-bi 100.0 1.5E-32 5.2E-37 324.9 14.6 189 421-622 341-563 (587)
39 3b5x_A Lipid A export ATP-bind 100.0 4.8E-32 1.6E-36 320.7 18.8 185 421-621 341-563 (582)
40 3b60_A Lipid A export ATP-bind 100.0 5E-32 1.7E-36 320.6 16.9 184 421-620 341-562 (582)
41 4a82_A Cystic fibrosis transme 100.0 3.4E-32 1.2E-36 321.6 15.0 184 421-621 339-560 (578)
42 2bbs_A Cystic fibrosis transme 100.0 5.5E-32 1.9E-36 292.1 15.0 177 421-621 40-243 (290)
43 3qf4_B Uncharacterized ABC tra 100.0 7.2E-32 2.4E-36 319.9 15.6 183 421-621 354-574 (598)
44 3ozx_A RNAse L inhibitor; ATP 100.0 3.4E-30 1.2E-34 300.4 17.5 201 419-633 267-485 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 8.1E-30 2.8E-34 301.0 20.7 188 419-622 355-560 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 5.8E-30 2E-34 299.1 17.5 188 419-622 285-490 (538)
47 4f4c_A Multidrug resistance pr 100.0 2.4E-29 8.3E-34 321.4 14.9 186 421-620 1076-1299(1321)
48 3g5u_A MCG1178, multidrug resi 100.0 4.4E-29 1.5E-33 318.3 14.2 185 421-621 387-609 (1284)
49 3g5u_A MCG1178, multidrug resi 100.0 6.9E-29 2.4E-33 316.5 13.4 187 421-621 1030-1254(1284)
50 3j16_B RLI1P; ribosome recycli 100.0 4.4E-28 1.5E-32 285.8 16.1 184 425-622 350-556 (608)
51 4f4c_A Multidrug resistance pr 99.9 4.5E-28 1.5E-32 309.7 16.6 186 421-622 415-638 (1321)
52 3bk7_A ABC transporter ATP-bin 99.9 1.3E-27 4.4E-32 282.2 12.1 168 425-613 95-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 1.4E-27 4.9E-32 278.9 11.7 170 422-612 21-234 (538)
54 2iw3_A Elongation factor 3A; a 99.9 2.1E-27 7.1E-32 289.7 12.0 192 419-619 669-981 (986)
55 2iw3_A Elongation factor 3A; a 99.9 1.5E-26 5E-31 282.2 17.4 172 421-620 435-630 (986)
56 3ux8_A Excinuclease ABC, A sub 99.9 1.5E-26 5E-31 278.2 12.1 180 439-622 30-295 (670)
57 3ux8_A Excinuclease ABC, A sub 99.9 3.4E-25 1.2E-29 266.3 16.0 170 440-621 335-636 (670)
58 3j16_B RLI1P; ribosome recycli 99.9 6.5E-25 2.2E-29 258.8 11.9 174 426-617 82-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.9 9.1E-25 3.1E-29 254.7 8.7 151 450-615 22-216 (538)
60 2vf7_A UVRA2, excinuclease ABC 99.9 4.6E-23 1.6E-27 249.5 14.4 91 527-620 708-822 (842)
61 2r6f_A Excinuclease ABC subuni 99.9 8E-23 2.7E-27 247.5 15.3 91 528-621 824-938 (972)
62 3pih_A Uvrabc system protein A 99.9 2.7E-22 9.3E-27 244.6 17.5 107 503-621 768-898 (916)
63 2ygr_A Uvrabc system protein A 99.9 2.5E-22 8.6E-27 244.0 16.6 91 528-621 842-956 (993)
64 1znw_A Guanylate kinase, GMP k 99.9 4E-26 1.4E-30 234.5 -15.0 172 439-612 8-205 (207)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 8E-26 2.7E-30 258.6 -19.3 188 420-633 117-350 (460)
66 4aby_A DNA repair protein RECN 99.8 8.7E-21 3E-25 215.0 12.9 175 440-619 48-382 (415)
67 1tq4_A IIGP1, interferon-induc 99.8 1.6E-21 5.5E-26 219.4 -9.2 159 439-613 35-255 (413)
68 2ehv_A Hypothetical protein PH 99.8 4.8E-21 1.6E-25 201.0 -5.6 158 441-609 17-206 (251)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.1E-18 7.3E-23 192.3 14.3 71 543-616 274-364 (365)
70 1tf7_A KAIC; homohexamer, hexa 99.8 2.4E-21 8.2E-26 226.4 -10.2 156 439-611 24-209 (525)
71 3b85_A Phosphate starvation-in 99.8 6.4E-21 2.2E-25 196.0 -6.5 134 439-599 12-162 (208)
72 4gp7_A Metallophosphoesterase; 99.8 1E-19 3.5E-24 181.2 1.2 131 445-600 1-164 (171)
73 3b9q_A Chloroplast SRP recepto 99.7 1.1E-19 3.8E-24 197.2 -1.0 152 443-614 90-284 (302)
74 1e69_A Chromosome segregation 99.7 1.3E-17 4.6E-22 182.8 12.2 77 540-620 211-308 (322)
75 4a74_A DNA repair and recombin 99.7 3E-19 1E-23 184.8 -2.9 156 440-609 11-198 (231)
76 2og2_A Putative signal recogni 99.7 9.3E-19 3.2E-23 193.7 -0.9 151 444-614 148-341 (359)
77 2v9p_A Replication protein E1; 99.7 2.2E-20 7.6E-25 202.1 -13.6 160 421-634 101-271 (305)
78 1cr0_A DNA primase/helicase; R 99.7 2.2E-18 7.6E-23 186.4 0.3 164 440-614 22-237 (296)
79 2dpy_A FLII, flagellum-specifi 99.7 2.7E-19 9.2E-24 203.6 -12.5 169 420-620 130-339 (438)
80 2o8b_B DNA mismatch repair pro 99.6 1.7E-17 5.8E-22 205.8 1.3 163 420-620 749-937 (1022)
81 3aez_A Pantothenate kinase; tr 99.6 1.4E-17 4.8E-22 181.5 -2.1 166 421-613 43-246 (312)
82 2pt7_A CAG-ALFA; ATPase, prote 99.6 7.3E-17 2.5E-21 177.3 2.2 119 442-613 160-291 (330)
83 3sop_A Neuronal-specific septi 99.6 6.1E-17 2.1E-21 173.0 -0.5 125 455-595 4-150 (270)
84 3thx_A DNA mismatch repair pro 99.6 2.2E-15 7.6E-20 184.7 13.2 167 421-621 631-809 (934)
85 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.5E-16 5E-21 164.5 2.3 142 439-609 8-190 (235)
86 2jeo_A Uridine-cytidine kinase 99.6 8E-16 2.7E-20 161.9 7.0 153 439-613 11-180 (245)
87 3szr_A Interferon-induced GTP- 99.6 1.5E-16 5.2E-21 188.5 0.4 175 420-620 9-232 (608)
88 2eyu_A Twitching motility prot 99.6 2.7E-16 9.2E-21 167.2 1.7 131 422-609 6-146 (261)
89 2obl_A ESCN; ATPase, hydrolase 99.6 3.7E-17 1.3E-21 180.6 -5.6 166 421-620 45-250 (347)
90 1z6g_A Guanylate kinase; struc 99.6 1.6E-18 5.6E-23 179.4 -15.5 153 440-606 10-205 (218)
91 1wb9_A DNA mismatch repair pro 99.6 1.1E-15 3.7E-20 185.4 5.7 168 421-618 577-751 (800)
92 1ye8_A Protein THEP1, hypothet 99.6 4.7E-16 1.6E-20 155.9 2.1 128 455-618 2-161 (178)
93 3qkt_A DNA double-strand break 99.5 6E-14 2.1E-18 154.8 17.4 66 542-609 242-327 (339)
94 1pzn_A RAD51, DNA repair and r 99.5 1.8E-16 6.1E-21 175.6 -3.0 163 440-619 117-309 (349)
95 1tf7_A KAIC; homohexamer, hexa 99.5 3.3E-15 1.1E-19 174.5 7.1 141 447-613 275-444 (525)
96 3asz_A Uridine kinase; cytidin 99.5 5.6E-16 1.9E-20 158.7 -3.0 130 450-594 3-160 (211)
97 3thx_B DNA mismatch repair pro 99.5 1.2E-14 3.9E-19 177.9 7.4 158 421-605 640-805 (918)
98 2o5v_A DNA replication and rep 99.5 5.7E-14 1.9E-18 155.6 11.2 62 552-622 291-353 (359)
99 1ewq_A DNA mismatch repair pro 99.5 1.5E-14 5.2E-19 174.4 4.8 145 421-602 550-704 (765)
100 2qnr_A Septin-2, protein NEDD5 99.5 5.7E-15 1.9E-19 160.3 0.4 144 425-596 2-168 (301)
101 1nlf_A Regulatory protein REPA 99.5 3.6E-14 1.2E-18 152.1 6.1 138 449-598 26-184 (279)
102 3pih_A Uvrabc system protein A 99.4 1.8E-13 6.3E-18 167.1 10.1 147 466-622 381-557 (916)
103 1s96_A Guanylate kinase, GMP k 99.4 5E-15 1.7E-19 153.3 -3.6 124 448-612 11-151 (219)
104 3jvv_A Twitching mobility prot 99.4 9.1E-14 3.1E-18 153.9 4.9 114 449-609 119-244 (356)
105 2gza_A Type IV secretion syste 99.4 6.9E-14 2.4E-18 155.6 3.6 123 442-612 164-302 (361)
106 2bbw_A Adenylate kinase 4, AK4 99.4 8.5E-15 2.9E-19 154.0 -3.8 132 452-586 26-200 (246)
107 1htw_A HI0065; nucleotide-bind 99.4 1.1E-14 3.8E-19 142.9 -4.5 82 422-510 8-97 (158)
108 1rj9_A FTSY, signal recognitio 99.4 1.5E-14 5.3E-19 156.9 -4.2 127 452-595 101-258 (304)
109 4ad8_A DNA repair protein RECN 99.4 1.1E-12 3.9E-17 152.7 10.6 55 552-609 414-471 (517)
110 2r6f_A Excinuclease ABC subuni 99.3 2.4E-12 8.3E-17 156.3 13.1 134 478-622 434-597 (972)
111 2cvh_A DNA repair and recombin 99.3 1.8E-12 6.2E-17 132.8 10.1 149 439-610 5-184 (220)
112 1n0w_A DNA repair protein RAD5 99.3 6.9E-13 2.3E-17 138.1 7.0 148 441-609 11-207 (243)
113 2qag_B Septin-6, protein NEDD5 99.3 1.2E-13 4.1E-18 155.3 -0.1 163 421-593 16-217 (427)
114 2bdt_A BH3686; alpha-beta prot 99.3 2.6E-14 8.8E-19 143.8 -5.4 158 453-621 2-180 (189)
115 2qag_C Septin-7; cell cycle, c 99.3 1.2E-12 4.1E-17 147.8 7.3 149 420-591 10-172 (418)
116 2i3b_A HCR-ntpase, human cance 99.3 1.1E-13 3.6E-18 140.0 -1.8 152 453-619 1-170 (189)
117 2vf7_A UVRA2, excinuclease ABC 99.3 1.2E-12 4.2E-17 158.6 7.1 152 461-622 270-472 (842)
118 2ewv_A Twitching motility prot 99.3 5.9E-13 2E-17 148.6 2.5 120 441-609 126-257 (372)
119 2ygr_A Uvrabc system protein A 99.3 6.8E-12 2.3E-16 153.0 10.8 112 503-622 470-614 (993)
120 1lw7_A Transcriptional regulat 99.3 1.1E-14 3.8E-19 162.2 -13.5 156 442-609 157-342 (365)
121 1pui_A ENGB, probable GTP-bind 99.2 1.3E-12 4.5E-17 132.8 2.1 157 421-588 3-202 (210)
122 3ec2_A DNA replication protein 99.2 3.6E-12 1.2E-16 127.1 4.2 109 447-595 32-143 (180)
123 3lda_A DNA repair protein RAD5 99.2 5.2E-12 1.8E-16 141.8 4.4 144 440-609 164-361 (400)
124 2yhs_A FTSY, cell division pro 99.2 1.1E-12 3.7E-17 149.4 -1.6 71 443-513 283-373 (503)
125 3e70_C DPA, signal recognition 99.2 3.4E-12 1.2E-16 139.8 0.8 126 450-594 126-278 (328)
126 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.7E-14 1.6E-18 157.7 -14.6 158 449-622 16-210 (392)
127 1w1w_A Structural maintenance 99.2 2.1E-10 7.1E-15 130.5 14.8 56 553-610 355-411 (430)
128 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 1.2E-10 4.2E-15 112.7 9.6 70 542-613 51-141 (148)
129 2kjq_A DNAA-related protein; s 99.1 1E-10 3.5E-15 113.4 6.1 93 441-593 29-123 (149)
130 2dr3_A UPF0273 protein PH0284; 99.0 2.5E-11 8.5E-16 126.4 0.9 58 552-609 127-195 (247)
131 1zp6_A Hypothetical protein AT 99.0 2E-12 6.7E-17 129.8 -7.7 62 449-513 5-77 (191)
132 1u0l_A Probable GTPase ENGC; p 99.0 4.1E-12 1.4E-16 137.8 -5.8 96 449-551 165-294 (301)
133 1sxj_E Activator 1 40 kDa subu 99.0 4E-10 1.4E-14 124.1 7.8 149 456-632 39-203 (354)
134 1lvg_A Guanylate kinase, GMP k 99.0 4.7E-13 1.6E-17 136.1 -14.8 50 552-609 123-172 (198)
135 1sq5_A Pantothenate kinase; P- 99.0 2.2E-11 7.5E-16 132.5 -2.7 126 421-568 37-199 (308)
136 2rcn_A Probable GTPase ENGC; Y 99.0 1.3E-10 4.6E-15 128.1 2.8 128 441-581 204-344 (358)
137 2oap_1 GSPE-2, type II secreti 99.0 3.9E-12 1.3E-16 147.3 -10.3 162 439-603 246-458 (511)
138 2yv5_A YJEQ protein; hydrolase 99.0 7E-11 2.4E-15 128.1 -0.2 100 450-551 162-290 (302)
139 1in4_A RUVB, holliday junction 98.8 4.8E-11 1.6E-15 131.2 -6.7 165 422-604 19-211 (334)
140 1t9h_A YLOQ, probable GTPase E 98.8 3.4E-10 1.2E-14 122.5 -1.5 93 448-541 168-288 (307)
141 1odf_A YGR205W, hypothetical 3 98.8 1.8E-09 6E-14 116.3 4.0 116 451-569 29-168 (290)
142 1nij_A Hypothetical protein YJ 98.8 5.1E-12 1.8E-16 138.1 -16.0 144 454-603 5-197 (318)
143 1udx_A The GTP-binding protein 98.7 2.9E-10 9.8E-15 128.2 -5.1 143 443-605 147-319 (416)
144 3euj_A Chromosome partition pr 98.7 3.9E-09 1.3E-13 120.7 2.7 47 440-487 17-64 (483)
145 1p9r_A General secretion pathw 98.7 2E-10 7E-15 129.6 -7.9 127 421-558 143-314 (418)
146 2px0_A Flagellar biosynthesis 98.7 1.3E-08 4.5E-13 109.8 6.5 139 451-617 103-247 (296)
147 2zr9_A Protein RECA, recombina 98.7 2.2E-08 7.5E-13 110.6 8.2 148 441-619 47-237 (349)
148 2r6a_A DNAB helicase, replicat 98.7 2.6E-08 8.9E-13 114.0 8.9 162 439-610 189-398 (454)
149 2qm8_A GTPase/ATPase; G protei 98.7 2.9E-10 9.8E-15 125.2 -7.2 75 421-501 29-120 (337)
150 3c8u_A Fructokinase; YP_612366 98.6 2.1E-09 7.2E-14 109.7 -1.6 52 450-507 19-70 (208)
151 3tr0_A Guanylate kinase, GMP k 98.6 1.6E-09 5.3E-14 109.7 -3.1 60 447-509 1-73 (205)
152 1ls1_A Signal recognition part 98.6 4.7E-08 1.6E-12 105.5 6.2 124 422-581 77-209 (295)
153 3kta_B Chromosome segregation 98.5 1.4E-07 4.7E-12 93.6 8.5 60 552-614 85-146 (173)
154 3auy_A DNA double-strand break 98.5 3.6E-07 1.2E-11 101.7 10.0 59 552-613 303-363 (371)
155 3hr8_A Protein RECA; alpha and 98.4 7.3E-07 2.5E-11 98.3 11.2 136 440-609 46-228 (356)
156 1qhl_A Protein (cell division 98.4 8.7E-09 3E-13 106.8 -4.6 55 419-487 7-62 (227)
157 2x8a_A Nuclear valosin-contain 98.4 1.8E-09 6.3E-14 115.2 -10.5 68 439-509 32-113 (274)
158 3lnc_A Guanylate kinase, GMP k 98.4 9.2E-08 3.1E-12 99.0 2.5 40 439-478 13-53 (231)
159 3k1j_A LON protease, ATP-depen 98.3 4E-08 1.4E-12 116.5 -3.4 58 439-496 46-112 (604)
160 3nwj_A ATSK2; P loop, shikimat 98.3 6.8E-08 2.3E-12 101.6 -1.6 53 420-477 16-72 (250)
161 4eun_A Thermoresistant glucoki 98.3 5.7E-08 1.9E-12 98.3 -2.4 37 448-487 24-60 (200)
162 1oix_A RAS-related protein RAB 98.2 7.4E-08 2.5E-12 96.6 -1.9 36 455-490 31-78 (191)
163 1vma_A Cell division protein F 98.2 5.7E-07 2E-11 97.3 4.9 42 445-486 96-138 (306)
164 2ius_A DNA translocase FTSK; n 98.2 4.2E-07 1.4E-11 104.6 3.2 152 445-607 159-361 (512)
165 3uie_A Adenylyl-sulfate kinase 98.2 1.1E-07 3.8E-12 96.1 -1.4 49 439-487 11-61 (200)
166 1iy2_A ATP-dependent metallopr 98.1 3.5E-08 1.2E-12 105.2 -8.5 79 423-510 51-143 (278)
167 3kta_A Chromosome segregation 98.1 1.5E-06 5.3E-11 86.0 4.0 33 444-477 18-50 (182)
168 2f9l_A RAB11B, member RAS onco 98.1 3.3E-07 1.1E-11 92.1 -0.9 36 455-490 7-54 (199)
169 3tqc_A Pantothenate kinase; bi 98.1 4.2E-07 1.4E-11 98.9 -0.6 57 439-502 72-137 (321)
170 1ixz_A ATP-dependent metallopr 98.1 4.8E-08 1.6E-12 102.5 -8.0 80 422-510 26-119 (254)
171 1fnn_A CDC6P, cell division co 97.9 1.1E-05 3.8E-10 89.2 8.0 125 452-598 41-172 (389)
172 4e22_A Cytidylate kinase; P-lo 97.9 1.1E-06 3.7E-11 92.5 -1.2 64 442-508 19-113 (252)
173 3vaa_A Shikimate kinase, SK; s 97.9 4.2E-06 1.4E-10 84.4 2.4 39 439-477 11-49 (199)
174 3a00_A Guanylate kinase, GMP k 97.9 3.3E-06 1.1E-10 84.3 1.5 26 453-478 1-26 (186)
175 2vp4_A Deoxynucleoside kinase; 97.8 5E-06 1.7E-10 86.0 2.3 38 447-487 14-51 (230)
176 2ce7_A Cell division protein F 97.8 3.1E-05 1.1E-09 88.6 8.8 116 440-598 38-167 (476)
177 2j41_A Guanylate kinase; GMP, 97.8 6.4E-06 2.2E-10 82.9 2.7 33 449-481 2-35 (207)
178 1kgd_A CASK, peripheral plasma 97.8 6.5E-06 2.2E-10 81.7 2.1 35 451-485 3-39 (180)
179 1zu4_A FTSY; GTPase, signal re 97.8 6.7E-06 2.3E-10 89.5 2.1 46 442-487 94-140 (320)
180 2dy1_A Elongation factor G; tr 97.7 4.4E-06 1.5E-10 99.9 0.5 120 447-597 3-138 (665)
181 2xau_A PRE-mRNA-splicing facto 97.7 3.7E-05 1.3E-09 93.4 7.9 53 552-605 207-262 (773)
182 2f1r_A Molybdopterin-guanine d 97.7 4.2E-06 1.4E-10 82.7 -0.4 34 454-487 3-40 (171)
183 2z4s_A Chromosomal replication 97.6 9.9E-06 3.4E-10 92.2 0.9 68 553-622 194-265 (440)
184 3tau_A Guanylate kinase, GMP k 97.6 2E-05 6.8E-10 80.1 2.7 28 451-478 6-33 (208)
185 1knq_A Gluconate kinase; ALFA/ 97.6 1.8E-05 6.1E-10 77.7 2.2 34 451-487 6-39 (175)
186 1rz3_A Hypothetical protein rb 97.6 1.8E-05 6.3E-10 79.9 2.0 37 450-486 19-56 (201)
187 2qt1_A Nicotinamide riboside k 97.6 3.6E-05 1.2E-09 77.8 4.0 45 448-502 16-60 (207)
188 1svm_A Large T antigen; AAA+ f 97.5 1.1E-05 3.7E-10 89.7 -0.3 43 440-484 156-198 (377)
189 2q6t_A DNAB replication FORK h 97.5 0.00024 8.2E-09 80.8 10.5 160 440-610 187-397 (444)
190 1v5w_A DMC1, meiotic recombina 97.5 0.00017 5.8E-09 79.2 8.4 137 441-596 109-275 (343)
191 3bh0_A DNAB-like replicative h 97.4 0.00017 5.8E-09 78.2 7.5 161 439-609 54-264 (315)
192 2z43_A DNA repair and recombin 97.4 0.00023 8E-09 77.4 8.6 138 440-596 93-259 (324)
193 2e87_A Hypothetical protein PH 97.4 0.00014 4.8E-09 80.2 6.6 44 552-597 247-294 (357)
194 2dhr_A FTSH; AAA+ protein, hex 97.4 1.5E-05 5E-10 91.9 -1.5 96 439-537 52-162 (499)
195 4a1f_A DNAB helicase, replicat 97.4 8.2E-05 2.8E-09 81.4 4.4 39 439-477 32-70 (338)
196 3ney_A 55 kDa erythrocyte memb 97.4 4.4E-05 1.5E-09 77.1 2.0 28 451-478 17-44 (197)
197 3cr8_A Sulfate adenylyltranfer 97.4 3.2E-05 1.1E-09 90.1 1.0 39 449-487 365-406 (552)
198 2qtf_A Protein HFLX, GTP-bindi 97.4 0.00056 1.9E-08 75.7 10.9 123 455-583 181-353 (364)
199 2qby_A CDC6 homolog 1, cell di 97.4 2.7E-05 9.1E-10 85.7 0.2 28 451-478 43-70 (386)
200 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.00011 3.8E-09 70.6 4.5 29 445-474 16-44 (149)
201 1kag_A SKI, shikimate kinase I 97.3 6.1E-05 2.1E-09 73.5 1.6 26 452-477 3-28 (173)
202 3kl4_A SRP54, signal recogniti 97.3 0.00035 1.2E-08 78.8 7.9 117 452-591 96-219 (433)
203 3llm_A ATP-dependent RNA helic 97.3 5E-05 1.7E-09 78.5 0.7 137 449-604 72-229 (235)
204 1u94_A RECA protein, recombina 97.3 0.00066 2.2E-08 74.8 9.7 38 440-477 48-87 (356)
205 1ega_A Protein (GTP-binding pr 97.2 1.6E-05 5.4E-10 85.8 -3.9 45 453-497 8-55 (301)
206 3cf0_A Transitional endoplasmi 97.1 0.00085 2.9E-08 72.0 8.9 30 448-477 44-73 (301)
207 2p67_A LAO/AO transport system 97.1 6.2E-05 2.1E-09 82.6 -0.1 58 422-485 31-89 (341)
208 2pez_A Bifunctional 3'-phospho 97.1 0.00011 3.8E-09 72.3 1.7 37 451-487 3-41 (179)
209 1ypw_A Transitional endoplasmi 97.1 0.0002 6.8E-09 87.4 4.3 31 448-478 233-263 (806)
210 1l8q_A Chromosomal replication 97.1 0.00015 5.2E-09 78.5 2.7 105 452-596 36-143 (324)
211 3ice_A Transcription terminati 97.0 0.00012 4E-09 80.7 0.7 52 421-477 133-198 (422)
212 3qks_A DNA double-strand break 97.0 0.00047 1.6E-08 69.8 4.5 29 445-474 16-44 (203)
213 4eaq_A DTMP kinase, thymidylat 96.9 0.00024 8.2E-09 73.4 1.9 41 443-483 13-56 (229)
214 3lxx_A GTPase IMAP family memb 96.9 0.0044 1.5E-07 63.7 11.1 24 455-478 31-54 (239)
215 3m6a_A ATP-dependent protease 96.9 0.00016 5.4E-09 84.4 0.1 48 439-487 95-143 (543)
216 1cke_A CK, MSSA, protein (cyti 96.9 0.00018 6E-09 73.5 0.2 33 453-485 5-41 (227)
217 3auy_A DNA double-strand break 96.8 0.00062 2.1E-08 75.4 4.4 44 422-474 3-46 (371)
218 2www_A Methylmalonic aciduria 96.8 0.00033 1.1E-08 77.1 2.1 36 451-486 72-108 (349)
219 3k53_A Ferrous iron transport 96.8 0.0007 2.4E-08 71.5 4.0 44 562-605 144-188 (271)
220 1m7g_A Adenylylsulfate kinase; 96.7 0.00032 1.1E-08 71.1 1.2 39 449-487 21-62 (211)
221 2qor_A Guanylate kinase; phosp 96.7 0.00043 1.5E-08 69.7 1.7 29 450-478 9-37 (204)
222 2w58_A DNAI, primosome compone 96.7 0.00057 1.9E-08 68.4 2.3 25 454-478 55-79 (202)
223 2i1q_A DNA repair and recombin 96.7 0.0042 1.4E-07 67.2 9.4 36 440-475 84-120 (322)
224 1njg_A DNA polymerase III subu 96.6 0.00076 2.6E-08 68.2 2.6 116 455-596 47-167 (250)
225 3b9p_A CG5977-PA, isoform A; A 96.6 0.0085 2.9E-07 63.6 10.8 27 451-477 52-78 (297)
226 2b8t_A Thymidine kinase; deoxy 96.5 0.0027 9.1E-08 65.2 6.3 52 552-609 88-150 (223)
227 1mky_A Probable GTP-binding pr 96.5 0.0016 5.5E-08 73.8 5.1 36 454-489 181-229 (439)
228 2yvu_A Probable adenylyl-sulfa 96.5 0.00072 2.5E-08 66.8 1.9 34 450-483 10-44 (186)
229 1q57_A DNA primase/helicase; d 96.5 0.0086 2.9E-07 69.0 11.2 160 440-610 229-441 (503)
230 1y63_A LMAJ004144AAA protein; 96.5 0.00094 3.2E-08 66.1 2.6 32 445-476 2-33 (184)
231 1jjv_A Dephospho-COA kinase; P 96.5 0.00099 3.4E-08 66.9 2.7 22 455-476 4-25 (206)
232 3t34_A Dynamin-related protein 96.5 0.0011 3.8E-08 73.0 3.4 42 440-484 24-68 (360)
233 1m2o_B GTP-binding protein SAR 96.5 0.0013 4.5E-08 65.1 3.5 36 440-476 11-46 (190)
234 3cmw_A Protein RECA, recombina 96.5 0.0055 1.9E-07 79.3 10.0 138 442-609 719-899 (1706)
235 2gj8_A MNME, tRNA modification 96.5 0.0012 4.1E-08 64.4 3.0 27 451-477 2-28 (172)
236 2qag_A Septin-2, protein NEDD5 96.4 0.0005 1.7E-08 76.0 0.2 46 421-478 17-62 (361)
237 1xp8_A RECA protein, recombina 96.4 0.0067 2.3E-07 67.0 9.0 37 440-476 59-97 (366)
238 1f6b_A SAR1; gtpases, N-termin 96.4 0.00059 2E-08 68.2 0.2 37 439-476 12-48 (198)
239 1j8m_F SRP54, signal recogniti 96.3 0.00087 3E-08 72.0 1.2 41 444-485 89-131 (297)
240 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00036 1.2E-08 76.4 -1.8 38 440-477 9-48 (359)
241 3bos_A Putative DNA replicatio 96.3 0.003 1E-07 64.2 5.0 27 452-478 51-77 (242)
242 2ffh_A Protein (FFH); SRP54, s 96.3 0.0011 3.9E-08 74.5 2.0 41 444-486 91-132 (425)
243 2if2_A Dephospho-COA kinase; a 96.3 0.0014 4.7E-08 65.7 2.1 21 455-475 3-23 (204)
244 2p5t_B PEZT; postsegregational 96.2 0.0011 3.7E-08 69.3 1.3 44 442-487 22-65 (253)
245 4fcw_A Chaperone protein CLPB; 96.2 0.003 1E-07 67.4 4.3 31 453-483 47-78 (311)
246 1np6_A Molybdopterin-guanine d 96.2 0.0017 5.9E-08 64.0 2.2 25 454-478 7-31 (174)
247 1sxj_C Activator 1 40 kDa subu 96.1 0.00053 1.8E-08 74.8 -1.7 39 439-477 30-70 (340)
248 1sxj_D Activator 1 41 kDa subu 96.1 0.0025 8.4E-08 69.3 3.6 29 552-581 132-160 (353)
249 2zts_A Putative uncharacterize 96.1 0.0093 3.2E-07 61.1 7.4 58 552-609 134-206 (251)
250 3bgw_A DNAB-like replicative h 96.1 0.013 4.3E-07 66.5 9.2 163 439-610 183-394 (444)
251 3h4m_A Proteasome-activating n 96.0 0.012 4.2E-07 61.9 8.3 27 451-477 49-75 (285)
252 3t61_A Gluconokinase; PSI-biol 96.0 0.002 6.9E-08 64.5 1.9 25 453-477 18-42 (202)
253 2wji_A Ferrous iron transport 96.0 0.0028 9.5E-08 61.1 2.7 23 455-477 5-27 (165)
254 3cm0_A Adenylate kinase; ATP-b 95.9 0.0029 9.8E-08 62.2 2.7 26 451-476 2-27 (186)
255 1qhx_A CPT, protein (chloramph 95.8 0.0037 1.3E-07 60.9 2.8 26 453-478 3-28 (178)
256 3kb2_A SPBC2 prophage-derived 95.8 0.0035 1.2E-07 60.5 2.6 23 455-477 3-25 (173)
257 2zej_A Dardarin, leucine-rich 95.7 0.0041 1.4E-07 61.0 2.7 23 455-477 4-26 (184)
258 3io5_A Recombination and repai 95.7 0.01 3.5E-07 63.9 5.8 25 448-473 24-48 (333)
259 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0041 1.4E-07 69.2 2.8 30 447-476 16-45 (396)
260 1q3t_A Cytidylate kinase; nucl 95.7 0.0039 1.3E-07 64.2 2.4 28 450-477 13-40 (236)
261 2wjg_A FEOB, ferrous iron tran 95.6 0.0044 1.5E-07 60.5 2.5 22 455-476 9-30 (188)
262 3r20_A Cytidylate kinase; stru 95.6 0.0048 1.6E-07 63.8 2.6 25 453-477 9-33 (233)
263 1lv7_A FTSH; alpha/beta domain 95.6 0.0034 1.2E-07 65.3 1.5 34 442-477 36-69 (257)
264 2rhm_A Putative kinase; P-loop 95.5 0.0052 1.8E-07 60.5 2.8 27 451-477 3-29 (193)
265 1ex7_A Guanylate kinase; subst 95.5 0.0038 1.3E-07 62.2 1.6 23 455-477 3-25 (186)
266 1kht_A Adenylate kinase; phosp 95.5 0.0054 1.8E-07 60.2 2.7 26 453-478 3-28 (192)
267 3cmw_A Protein RECA, recombina 95.5 0.027 9.2E-07 73.0 9.6 142 440-610 368-551 (1706)
268 3cmu_A Protein RECA, recombina 95.4 0.019 6.5E-07 75.3 8.1 142 440-610 368-551 (2050)
269 1gvn_B Zeta; postsegregational 95.4 0.0064 2.2E-07 64.8 3.1 35 451-486 31-65 (287)
270 2ze6_A Isopentenyl transferase 95.3 0.0061 2.1E-07 63.7 2.3 24 454-477 2-25 (253)
271 2chg_A Replication factor C sm 95.3 0.067 2.3E-06 52.9 10.0 23 455-477 40-62 (226)
272 3trf_A Shikimate kinase, SK; a 95.2 0.0075 2.6E-07 59.1 2.8 26 452-477 4-29 (185)
273 1vht_A Dephospho-COA kinase; s 95.2 0.0084 2.9E-07 60.7 3.0 24 452-475 3-26 (218)
274 3iij_A Coilin-interacting nucl 95.2 0.0073 2.5E-07 59.1 2.4 26 451-476 9-34 (180)
275 3lw7_A Adenylate kinase relate 95.1 0.0085 2.9E-07 57.5 2.8 19 455-473 3-21 (179)
276 2v54_A DTMP kinase, thymidylat 95.1 0.0088 3E-07 59.5 2.8 26 452-477 3-28 (204)
277 1xjc_A MOBB protein homolog; s 95.1 0.0052 1.8E-07 60.2 1.0 25 454-478 5-29 (169)
278 2wwf_A Thymidilate kinase, put 95.1 0.0096 3.3E-07 59.6 2.9 27 451-477 8-34 (212)
279 2v1u_A Cell division control p 95.0 0.016 5.6E-07 63.2 5.0 28 451-478 42-69 (387)
280 3d8b_A Fidgetin-like protein 1 95.0 0.042 1.4E-06 60.2 8.3 27 451-477 115-141 (357)
281 2plr_A DTMP kinase, probable t 95.0 0.01 3.4E-07 59.3 3.0 32 452-483 3-34 (213)
282 2jaq_A Deoxyguanosine kinase; 95.0 0.0089 3.1E-07 59.3 2.6 23 455-477 2-24 (205)
283 2j9r_A Thymidine kinase; TK1, 94.9 0.038 1.3E-06 56.1 6.9 51 553-609 101-162 (214)
284 2c95_A Adenylate kinase 1; tra 94.9 0.01 3.5E-07 58.5 2.7 27 451-477 7-33 (196)
285 1gtv_A TMK, thymidylate kinase 94.9 0.0055 1.9E-07 61.5 0.6 24 455-478 2-25 (214)
286 1nn5_A Similar to deoxythymidy 94.8 0.011 3.9E-07 59.1 2.8 27 451-477 7-33 (215)
287 1ly1_A Polynucleotide kinase; 94.8 0.012 4.1E-07 57.1 2.8 22 454-475 3-24 (181)
288 1uf9_A TT1252 protein; P-loop, 94.8 0.011 3.8E-07 58.6 2.6 23 454-476 9-31 (203)
289 1via_A Shikimate kinase; struc 94.8 0.01 3.5E-07 57.8 2.2 23 455-477 6-28 (175)
290 1xx6_A Thymidine kinase; NESG, 94.7 0.013 4.3E-07 58.7 2.7 51 553-609 81-142 (191)
291 2bwj_A Adenylate kinase 5; pho 94.6 0.0063 2.1E-07 60.3 0.2 28 450-477 9-36 (199)
292 1nks_A Adenylate kinase; therm 94.6 0.014 4.8E-07 57.2 2.7 24 455-478 3-26 (194)
293 3dm5_A SRP54, signal recogniti 94.6 0.078 2.7E-06 59.8 9.0 28 452-479 99-126 (443)
294 1ko7_A HPR kinase/phosphatase; 94.5 0.021 7.1E-07 61.5 4.0 37 439-476 131-167 (314)
295 1tev_A UMP-CMP kinase; ploop, 94.5 0.016 5.5E-07 56.9 2.9 24 453-476 3-26 (196)
296 3q72_A GTP-binding protein RAD 94.5 0.016 5.5E-07 55.0 2.7 22 456-477 5-26 (166)
297 3co5_A Putative two-component 94.3 0.17 5.8E-06 47.5 9.5 41 553-595 75-117 (143)
298 1aky_A Adenylate kinase; ATP:A 94.3 0.018 6.3E-07 58.2 2.8 27 451-477 2-28 (220)
299 1fzq_A ADP-ribosylation factor 94.3 0.019 6.5E-07 56.1 2.7 23 455-477 18-40 (181)
300 2vli_A Antibiotic resistance p 94.2 0.015 5.3E-07 56.6 2.1 26 452-477 4-29 (183)
301 2ged_A SR-beta, signal recogni 94.2 0.016 5.3E-07 56.9 1.9 23 455-477 50-72 (193)
302 4ag6_A VIRB4 ATPase, type IV s 94.2 0.015 5E-07 64.7 1.9 47 552-599 261-311 (392)
303 3tw8_B RAS-related protein RAB 94.1 0.021 7E-07 54.9 2.7 23 455-477 11-33 (181)
304 2nzj_A GTP-binding protein REM 94.1 0.019 6.6E-07 54.9 2.5 23 455-477 6-28 (175)
305 2erx_A GTP-binding protein DI- 94.1 0.02 6.7E-07 54.5 2.5 22 455-476 5-26 (172)
306 2z0h_A DTMP kinase, thymidylat 94.1 0.02 6.8E-07 56.4 2.6 24 455-478 2-25 (197)
307 1zd8_A GTP:AMP phosphotransfer 94.1 0.021 7E-07 58.2 2.7 27 451-477 5-31 (227)
308 1z2a_A RAS-related protein RAB 94.1 0.017 5.8E-07 54.8 1.9 23 455-477 7-29 (168)
309 2ce2_X GTPase HRAS; signaling 94.0 0.018 6.2E-07 54.2 1.9 23 455-477 5-27 (166)
310 3q85_A GTP-binding protein REM 94.0 0.022 7.5E-07 54.2 2.5 22 456-477 5-26 (169)
311 1zak_A Adenylate kinase; ATP:A 93.9 0.021 7.3E-07 57.8 2.4 26 452-477 4-29 (222)
312 1svi_A GTP-binding protein YSX 93.9 0.022 7.5E-07 55.8 2.4 23 455-477 25-47 (195)
313 1moz_A ARL1, ADP-ribosylation 93.9 0.021 7E-07 55.3 2.2 24 453-476 18-41 (183)
314 3b1v_A Ferrous iron uptake tra 93.9 0.022 7.4E-07 60.2 2.5 23 455-477 5-27 (272)
315 3ake_A Cytidylate kinase; CMP 93.9 0.023 8E-07 56.5 2.6 23 455-477 4-26 (208)
316 2dyk_A GTP-binding protein; GT 93.9 0.019 6.6E-07 54.1 1.9 23 455-477 3-25 (161)
317 1u8z_A RAS-related protein RAL 93.9 0.02 6.7E-07 54.1 1.9 23 455-477 6-28 (168)
318 1kao_A RAP2A; GTP-binding prot 93.9 0.02 6.7E-07 54.1 1.9 23 455-477 5-27 (167)
319 3pqc_A Probable GTP-binding pr 93.8 0.023 7.9E-07 55.4 2.4 23 455-477 25-47 (195)
320 2lkc_A Translation initiation 93.8 0.028 9.6E-07 54.0 3.0 25 453-477 8-32 (178)
321 3lxw_A GTPase IMAP family memb 93.8 0.023 8E-07 58.9 2.5 24 455-478 23-46 (247)
322 1ukz_A Uridylate kinase; trans 93.8 0.027 9.1E-07 56.1 2.8 24 453-476 15-38 (203)
323 2cdn_A Adenylate kinase; phosp 93.8 0.027 9.4E-07 56.0 2.9 25 453-477 20-44 (201)
324 1g16_A RAS-related protein SEC 93.8 0.021 7.2E-07 54.3 1.9 22 456-477 6-27 (170)
325 2cxx_A Probable GTP-binding pr 93.7 0.025 8.7E-07 54.9 2.5 22 456-477 4-25 (190)
326 1z0j_A RAB-22, RAS-related pro 93.7 0.022 7.4E-07 54.2 1.9 23 455-477 8-30 (170)
327 3ihw_A Centg3; RAS, centaurin, 93.7 0.035 1.2E-06 54.4 3.5 22 455-476 22-43 (184)
328 1z08_A RAS-related protein RAB 93.7 0.022 7.4E-07 54.3 1.9 22 455-476 8-29 (170)
329 2qmh_A HPR kinase/phosphorylas 93.7 0.043 1.5E-06 55.1 4.1 37 440-477 22-58 (205)
330 1ek0_A Protein (GTP-binding pr 93.7 0.022 7.5E-07 54.0 1.9 23 455-477 5-27 (170)
331 3fb4_A Adenylate kinase; psych 93.7 0.026 9E-07 56.7 2.6 22 455-476 2-23 (216)
332 1c1y_A RAS-related protein RAP 93.7 0.023 7.7E-07 53.8 1.9 23 455-477 5-27 (167)
333 3cmu_A Protein RECA, recombina 93.6 0.045 1.5E-06 71.9 5.2 129 441-598 718-872 (2050)
334 2pbr_A DTMP kinase, thymidylat 93.6 0.028 9.5E-07 55.1 2.6 23 455-477 2-24 (195)
335 1ky3_A GTP-binding protein YPT 93.6 0.023 7.8E-07 54.7 1.9 23 455-477 10-32 (182)
336 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.023 7.8E-07 54.6 1.9 23 455-477 9-31 (177)
337 3t5d_A Septin-7; GTP-binding p 93.6 0.028 9.6E-07 59.1 2.7 23 455-477 10-32 (274)
338 2fn4_A P23, RAS-related protei 93.6 0.023 7.9E-07 54.6 1.9 23 455-477 11-33 (181)
339 1a7j_A Phosphoribulokinase; tr 93.6 0.022 7.4E-07 60.8 1.8 43 452-500 4-46 (290)
340 1e6c_A Shikimate kinase; phosp 93.6 0.025 8.7E-07 54.5 2.2 24 454-477 3-26 (173)
341 1qf9_A UMP/CMP kinase, protein 93.6 0.032 1.1E-06 54.6 2.9 24 453-476 6-29 (194)
342 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.032 1.1E-06 58.3 3.0 27 451-477 2-28 (260)
343 2iyv_A Shikimate kinase, SK; t 93.4 0.028 9.4E-07 55.0 2.2 24 454-477 3-26 (184)
344 3cbq_A GTP-binding protein REM 93.4 0.031 1E-06 55.4 2.5 22 455-476 25-46 (195)
345 3dl0_A Adenylate kinase; phosp 93.4 0.031 1.1E-06 56.2 2.6 23 455-477 2-24 (216)
346 3tlx_A Adenylate kinase 2; str 93.4 0.034 1.2E-06 57.5 2.9 25 452-476 28-52 (243)
347 1r2q_A RAS-related protein RAB 93.4 0.027 9.2E-07 53.4 1.9 22 455-476 8-29 (170)
348 2pt5_A Shikimate kinase, SK; a 93.4 0.033 1.1E-06 53.4 2.6 23 455-477 2-24 (168)
349 2hxs_A RAB-26, RAS-related pro 93.3 0.031 1.1E-06 53.7 2.3 23 455-477 8-30 (178)
350 1upt_A ARL1, ADP-ribosylation 93.3 0.028 9.6E-07 53.5 1.9 22 455-476 9-30 (171)
351 4dsu_A GTPase KRAS, isoform 2B 93.3 0.028 9.5E-07 54.5 1.9 23 455-477 6-28 (189)
352 3clv_A RAB5 protein, putative; 93.3 0.028 9.5E-07 55.0 1.9 23 455-477 9-31 (208)
353 1jal_A YCHF protein; nucleotid 93.3 0.042 1.4E-06 60.4 3.5 24 453-476 2-25 (363)
354 1zuh_A Shikimate kinase; alpha 93.3 0.035 1.2E-06 53.4 2.6 24 454-477 8-31 (168)
355 2oil_A CATX-8, RAS-related pro 93.2 0.029 9.8E-07 55.0 1.9 23 455-477 27-49 (193)
356 3bc1_A RAS-related protein RAB 93.2 0.029 9.9E-07 54.5 1.9 23 455-477 13-35 (195)
357 1r8s_A ADP-ribosylation factor 93.2 0.03 1E-06 53.0 1.9 21 456-476 3-23 (164)
358 3a8t_A Adenylate isopentenyltr 93.2 0.044 1.5E-06 59.5 3.5 27 452-478 39-65 (339)
359 1wf3_A GTP-binding protein; GT 93.2 0.036 1.2E-06 59.4 2.8 26 451-477 6-31 (301)
360 2y8e_A RAB-protein 6, GH09086P 93.2 0.03 1E-06 53.7 1.9 22 455-476 16-37 (179)
361 1ksh_A ARF-like protein 2; sma 93.2 0.039 1.3E-06 53.6 2.7 25 453-477 18-42 (186)
362 3iby_A Ferrous iron transport 93.1 0.035 1.2E-06 58.0 2.5 23 455-477 3-25 (256)
363 3v9p_A DTMP kinase, thymidylat 93.1 0.034 1.2E-06 57.1 2.3 29 450-478 22-50 (227)
364 3t1o_A Gliding protein MGLA; G 93.0 0.035 1.2E-06 54.1 2.3 24 455-478 16-39 (198)
365 2h57_A ADP-ribosylation factor 93.0 0.038 1.3E-06 54.0 2.5 23 455-477 23-45 (190)
366 2g6b_A RAS-related protein RAB 93.0 0.032 1.1E-06 53.6 1.9 23 455-477 12-34 (180)
367 2a9k_A RAS-related protein RAL 93.0 0.032 1.1E-06 53.8 1.9 23 455-477 20-42 (187)
368 2xtp_A GTPase IMAP family memb 93.0 0.037 1.3E-06 57.5 2.5 23 455-477 24-46 (260)
369 2il1_A RAB12; G-protein, GDP, 93.0 0.042 1.4E-06 54.0 2.7 23 455-477 28-50 (192)
370 2grj_A Dephospho-COA kinase; T 93.0 0.041 1.4E-06 54.9 2.6 24 453-476 12-35 (192)
371 3con_A GTPase NRAS; structural 93.0 0.033 1.1E-06 54.3 1.9 23 455-477 23-45 (190)
372 1z0f_A RAB14, member RAS oncog 93.0 0.034 1.2E-06 53.3 1.9 23 455-477 17-39 (179)
373 1uj2_A Uridine-cytidine kinase 92.9 0.041 1.4E-06 57.1 2.6 24 454-477 23-46 (252)
374 2orv_A Thymidine kinase; TP4A 92.9 0.34 1.2E-05 49.6 9.4 51 552-609 89-150 (234)
375 3cf2_A TER ATPase, transitiona 92.9 0.27 9.2E-06 59.5 10.0 27 451-477 236-262 (806)
376 2bme_A RAB4A, RAS-related prot 92.9 0.035 1.2E-06 53.8 1.9 23 455-477 12-34 (186)
377 4edh_A DTMP kinase, thymidylat 92.9 0.048 1.6E-06 55.4 3.0 31 451-481 4-34 (213)
378 3iev_A GTP-binding protein ERA 92.8 0.043 1.5E-06 58.9 2.8 23 455-477 12-34 (308)
379 2efe_B Small GTP-binding prote 92.8 0.035 1.2E-06 53.4 1.9 23 455-477 14-36 (181)
380 1nrj_B SR-beta, signal recogni 92.8 0.036 1.2E-06 55.5 1.9 23 455-477 14-36 (218)
381 2bov_A RAla, RAS-related prote 92.7 0.037 1.3E-06 54.6 1.9 23 455-477 16-38 (206)
382 4dhe_A Probable GTP-binding pr 92.7 0.026 8.7E-07 56.8 0.7 23 455-477 31-53 (223)
383 3be4_A Adenylate kinase; malar 92.7 0.045 1.5E-06 55.3 2.5 26 452-477 4-29 (217)
384 1m7b_A RND3/RHOE small GTP-bin 92.7 0.038 1.3E-06 53.8 1.9 23 455-477 9-31 (184)
385 2gf0_A GTP-binding protein DI- 92.7 0.038 1.3E-06 54.2 1.9 22 455-476 10-31 (199)
386 2gf9_A RAS-related protein RAB 92.7 0.038 1.3E-06 54.0 1.9 23 455-477 24-46 (189)
387 1vg8_A RAS-related protein RAB 92.7 0.038 1.3E-06 54.6 1.9 23 455-477 10-32 (207)
388 2qu8_A Putative nucleolar GTP- 92.7 0.048 1.7E-06 55.3 2.7 23 455-477 31-53 (228)
389 1zbd_A Rabphilin-3A; G protein 92.7 0.046 1.6E-06 54.0 2.5 23 455-477 10-32 (203)
390 2fg5_A RAB-22B, RAS-related pr 92.7 0.038 1.3E-06 54.2 1.9 23 455-477 25-47 (192)
391 4bas_A ADP-ribosylation factor 92.6 0.05 1.7E-06 53.3 2.7 23 455-477 19-41 (199)
392 3tkl_A RAS-related protein RAB 92.6 0.039 1.3E-06 53.9 1.9 23 455-477 18-40 (196)
393 3i8s_A Ferrous iron transport 92.6 0.045 1.5E-06 57.7 2.5 23 455-477 5-27 (274)
394 3a1s_A Iron(II) transport prot 92.6 0.047 1.6E-06 57.1 2.5 23 455-477 7-29 (258)
395 1jbk_A CLPB protein; beta barr 92.6 0.053 1.8E-06 52.3 2.8 26 452-477 42-67 (195)
396 2o52_A RAS-related protein RAB 92.5 0.048 1.7E-06 54.0 2.5 23 455-477 27-49 (200)
397 1zj6_A ADP-ribosylation factor 92.5 0.049 1.7E-06 53.1 2.5 22 455-476 18-39 (187)
398 2dby_A GTP-binding protein; GD 92.5 0.039 1.3E-06 60.9 1.9 21 456-476 4-24 (368)
399 2f6r_A COA synthase, bifunctio 92.5 0.05 1.7E-06 57.6 2.7 22 453-474 75-96 (281)
400 1jwy_B Dynamin A GTPase domain 92.5 0.048 1.7E-06 58.2 2.6 23 455-477 26-48 (315)
401 3kkq_A RAS-related protein M-R 92.5 0.042 1.4E-06 53.1 1.9 23 455-477 20-42 (183)
402 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.042 1.4E-06 53.1 1.9 22 455-476 7-28 (186)
403 2xb4_A Adenylate kinase; ATP-b 92.5 0.05 1.7E-06 55.3 2.6 23 455-477 2-24 (223)
404 2h17_A ADP-ribosylation factor 92.5 0.046 1.6E-06 53.0 2.2 23 455-477 23-45 (181)
405 3lv8_A DTMP kinase, thymidylat 92.5 0.054 1.9E-06 55.9 2.8 27 452-478 26-52 (236)
406 2wsm_A Hydrogenase expression/ 92.5 0.044 1.5E-06 55.1 2.1 24 454-477 31-54 (221)
407 1p5z_B DCK, deoxycytidine kina 92.4 0.051 1.7E-06 56.7 2.6 27 451-477 22-48 (263)
408 3oes_A GTPase rhebl1; small GT 92.4 0.043 1.5E-06 54.3 1.9 23 455-477 26-48 (201)
409 2cjw_A GTP-binding protein GEM 92.4 0.043 1.5E-06 54.2 1.9 21 455-475 8-28 (192)
410 1z06_A RAS-related protein RAB 92.3 0.045 1.5E-06 53.5 1.9 22 455-476 22-43 (189)
411 3t5g_A GTP-binding protein RHE 92.3 0.045 1.5E-06 52.8 1.9 22 455-476 8-29 (181)
412 3exa_A TRNA delta(2)-isopenten 92.3 0.057 1.9E-06 58.0 2.8 26 453-478 3-28 (322)
413 3tmk_A Thymidylate kinase; pho 92.3 0.059 2E-06 54.9 2.8 29 451-479 3-31 (216)
414 3dz8_A RAS-related protein RAB 92.3 0.045 1.6E-06 53.6 1.9 23 455-477 25-47 (191)
415 2bcg_Y Protein YP2, GTP-bindin 92.3 0.045 1.6E-06 54.2 1.9 23 455-477 10-32 (206)
416 2b6h_A ADP-ribosylation factor 92.3 0.06 2E-06 53.0 2.8 23 455-477 31-53 (192)
417 3zvl_A Bifunctional polynucleo 92.3 0.059 2E-06 60.5 3.0 27 451-477 256-282 (416)
418 1e4v_A Adenylate kinase; trans 92.2 0.058 2E-06 54.3 2.6 22 455-476 2-23 (214)
419 2a5j_A RAS-related protein RAB 92.2 0.048 1.6E-06 53.4 1.9 23 455-477 23-45 (191)
420 2ew1_A RAS-related protein RAB 92.2 0.047 1.6E-06 54.5 1.9 22 455-476 28-49 (201)
421 1ltq_A Polynucleotide kinase; 92.2 0.059 2E-06 57.2 2.8 22 454-475 3-24 (301)
422 3bwd_D RAC-like GTP-binding pr 92.2 0.048 1.7E-06 52.5 1.9 23 455-477 10-32 (182)
423 4djt_A GTP-binding nuclear pro 92.2 0.042 1.4E-06 55.0 1.5 23 455-477 13-35 (218)
424 4tmk_A Protein (thymidylate ki 92.2 0.063 2.1E-06 54.5 2.8 30 452-481 2-31 (213)
425 1qvr_A CLPB protein; coiled co 92.2 0.074 2.5E-06 65.3 4.0 24 454-477 192-215 (854)
426 2f7s_A C25KG, RAS-related prot 92.1 0.058 2E-06 53.9 2.5 23 455-477 27-49 (217)
427 1zd9_A ADP-ribosylation factor 92.1 0.05 1.7E-06 53.2 1.9 23 455-477 24-46 (188)
428 2fu5_C RAS-related protein RAB 92.1 0.044 1.5E-06 53.0 1.5 23 455-477 10-32 (183)
429 3ld9_A DTMP kinase, thymidylat 92.1 0.07 2.4E-06 54.6 3.0 29 451-479 19-47 (223)
430 1x3s_A RAS-related protein RAB 92.1 0.051 1.7E-06 53.0 1.9 23 455-477 17-39 (195)
431 2atv_A RERG, RAS-like estrogen 92.0 0.051 1.7E-06 53.5 1.9 23 455-477 30-52 (196)
432 3reg_A RHO-like small GTPase; 92.0 0.051 1.7E-06 53.3 1.9 23 455-477 25-47 (194)
433 2aka_B Dynamin-1; fusion prote 92.0 0.057 1.9E-06 57.0 2.4 23 455-477 28-50 (299)
434 1ak2_A Adenylate kinase isoenz 92.0 0.066 2.3E-06 54.7 2.8 26 452-477 15-40 (233)
435 3cph_A RAS-related protein SEC 92.0 0.052 1.8E-06 53.9 1.9 23 455-477 22-44 (213)
436 2p5s_A RAS and EF-hand domain 92.0 0.052 1.8E-06 53.6 1.9 23 455-477 30-52 (199)
437 2j1l_A RHO-related GTP-binding 92.0 0.062 2.1E-06 53.9 2.5 23 455-477 36-58 (214)
438 2q3h_A RAS homolog gene family 91.9 0.064 2.2E-06 52.8 2.5 23 455-477 22-44 (201)
439 2fv8_A H6, RHO-related GTP-bin 91.9 0.053 1.8E-06 54.0 1.9 23 455-477 27-49 (207)
440 3llu_A RAS-related GTP-binding 91.9 0.065 2.2E-06 52.8 2.5 23 455-477 22-44 (196)
441 2ocp_A DGK, deoxyguanosine kin 91.9 0.073 2.5E-06 54.7 3.0 26 452-477 1-26 (241)
442 2x77_A ADP-ribosylation factor 91.9 0.061 2.1E-06 52.4 2.2 22 455-476 24-45 (189)
443 3def_A T7I23.11 protein; chlor 91.8 0.063 2.2E-06 56.0 2.5 23 455-477 38-60 (262)
444 3umf_A Adenylate kinase; rossm 91.8 0.073 2.5E-06 54.2 2.8 27 451-477 27-53 (217)
445 3d3q_A TRNA delta(2)-isopenten 91.8 0.066 2.2E-06 58.3 2.6 25 454-478 8-32 (340)
446 3tqf_A HPR(Ser) kinase; transf 91.8 0.098 3.4E-06 51.3 3.6 36 440-476 4-39 (181)
447 1gwn_A RHO-related GTP-binding 91.8 0.057 1.9E-06 54.0 1.9 23 455-477 30-52 (205)
448 2iwr_A Centaurin gamma 1; ANK 91.7 0.045 1.6E-06 52.6 1.1 22 455-476 9-30 (178)
449 1sky_E F1-ATPase, F1-ATP synth 91.7 0.08 2.7E-06 60.0 3.2 43 440-483 139-182 (473)
450 1h65_A Chloroplast outer envel 91.7 0.069 2.4E-06 55.9 2.5 23 455-477 41-63 (270)
451 3c5c_A RAS-like protein 12; GD 91.6 0.06 2.1E-06 52.7 1.9 23 455-477 23-45 (187)
452 2fh5_B SR-beta, signal recogni 91.6 0.06 2.1E-06 53.7 1.9 23 455-477 9-31 (214)
453 2p65_A Hypothetical protein PF 91.6 0.063 2.1E-06 51.7 2.0 25 453-477 43-67 (187)
454 3cnl_A YLQF, putative uncharac 91.5 0.086 2.9E-06 55.3 3.1 25 454-478 100-124 (262)
455 3u61_B DNA polymerase accessor 91.5 0.77 2.6E-05 48.9 10.7 42 552-596 104-147 (324)
456 2gco_A H9, RHO-related GTP-bin 91.5 0.064 2.2E-06 53.1 1.9 22 456-477 28-49 (201)
457 2yc2_C IFT27, small RAB-relate 91.4 0.043 1.5E-06 54.1 0.6 22 455-476 22-43 (208)
458 2h92_A Cytidylate kinase; ross 91.3 0.075 2.5E-06 53.4 2.3 25 453-477 3-27 (219)
459 3crm_A TRNA delta(2)-isopenten 91.3 0.083 2.8E-06 57.1 2.7 24 454-477 6-29 (323)
460 2g3y_A GTP-binding protein GEM 91.3 0.08 2.7E-06 53.5 2.5 22 455-476 39-60 (211)
461 3l0i_B RAS-related protein RAB 91.2 0.048 1.6E-06 53.9 0.6 23 455-477 35-57 (199)
462 2atx_A Small GTP binding prote 91.2 0.072 2.5E-06 52.1 1.9 22 455-476 20-41 (194)
463 3foz_A TRNA delta(2)-isopenten 91.1 0.099 3.4E-06 56.1 3.0 25 453-477 10-34 (316)
464 3eph_A TRNA isopentenyltransfe 90.9 0.1 3.4E-06 58.1 3.0 26 453-478 2-27 (409)
465 2hf9_A Probable hydrogenase ni 90.9 0.097 3.3E-06 52.7 2.6 24 454-477 39-62 (226)
466 4dcu_A GTP-binding protein ENG 90.7 0.094 3.2E-06 59.5 2.5 23 455-477 25-47 (456)
467 2hup_A RAS-related protein RAB 90.6 0.085 2.9E-06 52.3 1.9 23 455-477 31-53 (201)
468 3cpj_B GTP-binding protein YPT 90.5 0.088 3E-06 53.1 1.9 23 455-477 15-37 (223)
469 2vhj_A Ntpase P4, P4; non- hyd 90.5 0.13 4.5E-06 55.4 3.3 34 442-475 112-145 (331)
470 2qz4_A Paraplegin; AAA+, SPG7, 90.4 0.11 3.9E-06 53.4 2.7 26 452-477 38-63 (262)
471 4gzl_A RAS-related C3 botulinu 90.3 0.095 3.2E-06 52.1 1.9 22 455-476 32-53 (204)
472 2r62_A Cell division protease 90.2 0.047 1.6E-06 56.8 -0.5 31 445-477 38-68 (268)
473 1ypw_A Transitional endoplasmi 90.2 0.048 1.7E-06 66.4 -0.5 32 446-477 504-535 (806)
474 3sr0_A Adenylate kinase; phosp 90.1 0.12 4.3E-06 52.0 2.6 23 455-477 2-24 (206)
475 2j0v_A RAC-like GTP-binding pr 90.1 0.1 3.4E-06 51.9 1.9 22 455-476 11-32 (212)
476 3q3j_B RHO-related GTP-binding 90.0 0.11 3.6E-06 52.3 1.9 22 455-476 29-50 (214)
477 2orw_A Thymidine kinase; TMTK, 89.9 0.15 5E-06 50.4 2.9 51 553-609 76-137 (184)
478 1g5t_A COB(I)alamin adenosyltr 89.6 0.06 2.1E-06 53.9 -0.2 56 552-609 119-178 (196)
479 2x2e_A Dynamin-1; nitration, h 89.5 0.13 4.5E-06 56.2 2.4 23 455-477 33-55 (353)
480 1puj_A YLQF, conserved hypothe 89.4 0.18 6.2E-06 53.4 3.2 25 453-477 120-144 (282)
481 3th5_A RAS-related C3 botulinu 88.9 0.071 2.4E-06 52.8 0.0 22 455-476 32-53 (204)
482 3r7w_A Gtpase1, GTP-binding pr 88.9 0.18 6.1E-06 54.0 2.8 24 453-476 3-26 (307)
483 3gj0_A GTP-binding nuclear pro 88.7 0.13 4.4E-06 51.6 1.5 22 455-476 17-39 (221)
484 3p32_A Probable GTPase RV1496/ 88.7 0.17 5.8E-06 55.4 2.5 27 452-478 78-104 (355)
485 3syl_A Protein CBBX; photosynt 88.7 0.19 6.4E-06 53.2 2.8 28 451-478 65-92 (309)
486 3n70_A Transport activator; si 88.5 0.18 6E-06 47.5 2.2 28 451-478 22-49 (145)
487 2hjg_A GTP-binding protein ENG 88.4 0.18 6.1E-06 56.8 2.5 23 455-477 5-27 (436)
488 1f5n_A Interferon-induced guan 88.3 0.2 6.8E-06 58.6 2.9 33 442-477 30-62 (592)
489 3geh_A MNME, tRNA modification 88.3 0.14 4.9E-06 58.1 1.6 25 452-476 223-247 (462)
490 1wxq_A GTP-binding protein; st 88.3 0.18 6.3E-06 56.1 2.5 22 456-477 3-24 (397)
491 1knx_A Probable HPR(Ser) kinas 88.1 0.39 1.3E-05 51.5 4.8 36 440-476 135-170 (312)
492 2qgz_A Helicase loader, putati 88.0 0.23 7.7E-06 53.3 2.9 26 453-478 152-177 (308)
493 3gmt_A Adenylate kinase; ssgci 88.0 0.2 6.9E-06 51.4 2.4 23 455-477 10-32 (230)
494 2v3c_C SRP54, signal recogniti 88.0 0.16 5.6E-06 57.1 1.8 25 454-478 100-124 (432)
495 1d2n_A N-ethylmaleimide-sensit 87.9 0.22 7.6E-06 51.9 2.7 26 451-476 62-87 (272)
496 1xwi_A SKD1 protein; VPS4B, AA 87.8 0.23 7.7E-06 53.6 2.8 27 451-477 43-69 (322)
497 2qpt_A EH domain-containing pr 87.7 0.21 7.3E-06 58.0 2.6 23 455-477 67-89 (550)
498 4a9a_A Ribosome-interacting GT 87.7 0.31 1E-05 53.8 3.8 39 455-493 74-124 (376)
499 1lnz_A SPO0B-associated GTP-bi 87.7 0.26 8.9E-06 53.7 3.2 33 445-477 150-182 (342)
500 3t15_A Ribulose bisphosphate c 87.4 0.24 8.2E-06 52.6 2.6 25 453-477 36-60 (293)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.5e-41 Score=370.06 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=180.2
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
..+|+++||++ .|+.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 22 ~~mi~v~~ls~-~y~~~-~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITK-VFHQG-TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEE-EEECS-SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CceEEEEeEEE-EeCCC-CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34799999999 78621 223579999999999999999999999999999999999984 999999999
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+|||+|++.+++. ||+||+.++...+ +.++++.+++++++|+.+||.+.+++++++|||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 259999999999999 9999999987765 456778888999999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||||||+.++..++++|++++++.|+|||+ ||+++++.++|||+++|+ +|+++..|++.+
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~-~G~iv~~g~~~e 250 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQDTVSE 250 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEECCBHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 9999999999999999999999999999995566999999 999999999999999999 999999998753
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-40 Score=368.27 Aligned_cols=192 Identities=17% Similarity=0.239 Sum_probs=177.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 4 ~l~i~~ls~-~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSK-SFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEE-EEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 699999999 886 6789999999999999999999999999999999999984 999999998
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------- 551 (846)
+.+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++|||
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA 154 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 358999999999999 9999999986554 345667778999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||||||+..+.++++.|+++.++.|+|+|+ |||.+++..+||||++|+ +|+++..|++++
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~e 225 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK-QGRILQTASPHE 225 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEE-TTEEEEEECHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE-CCEEEEEeCHHH
Confidence 9999999999999999999999999888886778999999 999999999999999999 999999999853
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.2e-40 Score=368.07 Aligned_cols=192 Identities=20% Similarity=0.175 Sum_probs=180.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 3 ~l~~~~l~~-~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ 76 (381)
T 3rlf_A 3 SVQLQNVTK-AWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76 (381)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSC
T ss_pred EEEEEeEEE-EEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCC
Confidence 589999999 886 6789999999999999999999999999999999999985 999999999 57
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|++.++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++..++++++||| .+|+
T Consensus 77 ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 77 VGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp EEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999999998765 567788888999999999999999999999998 8999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||||||+..+.++++.|++++++.|+|+|+ |||.+++..+||||++|+ +|+++..|++++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~~ 220 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLE 220 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHH
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEEeCHHH
Confidence 999999999999999999999999996566999999 999999999999999999 999999999843
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-39 Score=339.66 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=171.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+ ++++|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 3 ~~l~~~~l~~-~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (224)
T 2pcj_A 3 EILRAENIKK-VIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76 (224)
T ss_dssp EEEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH
T ss_pred cEEEEEeEEE-EEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 3799999999 786 4789999999999999999999999999999999999985 999999998
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+|||+|++.+++. ||+||+.++...+ +.++++.+++++++++.+||.+..++++++|||
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 139999999989998 9999999987654 344555667899999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++ ++||++++|+ +|++++.|+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l-~~~g~tvi~vtHd~~~~-~~~d~v~~l~-~G~i~~~g~~ 223 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTHERELA-ELTHRTLEMK-DGKVVGEITR 223 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHH-TTSSEEEEEE-TTEEEEEEEC
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HhCCEEEEEE-CCEEEEEeee
Confidence 999999999999999999999999999999 555999999 9999887 8999999999 9999998863
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-39 Score=349.08 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=174.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+|+++||++ .|++ ++.+|+|||+++++||+++|+||||||||||+|+|+|+.+ ++|+|.++|
T Consensus 6 ~~l~i~~ls~-~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNY-NYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEE-ECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEE-EECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 4799999999 7852 3469999999999999999999999999999999999985 999999999
Q ss_pred ---eEEEEEeccCc-CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 488 ---LLLCYVEKLDA-HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 488 ---~~igyv~Q~~~-~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
+.+|||+|++. .+.. ||+||+.++...+ +.++++.+++++++++.+||++.+++++++|||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 25999999863 3346 9999999987654 456777788999999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|++++++.|+|||+ ||+++++.++|||+++|+ +|+++..|++++
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~-~G~i~~~g~~~~ 230 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK-EGRVILQGNPKE 230 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE-TTEEEEEECHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 9999999999999999999999999999994356999999 999999999999999999 999999999854
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.5e-39 Score=359.14 Aligned_cols=193 Identities=21% Similarity=0.229 Sum_probs=178.5
Q ss_pred eEEEEeceeeeee-ccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 420 VTFVFEGLTFSRY-EEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~-~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
.+|+++||++ .| + ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 13 ~~l~~~~l~~-~y~g-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 13 MTIEFVGVEK-IYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp EEEEEEEEEE-CCTT-----STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred ceEEEEEEEE-EEcC-----CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhh
Confidence 4799999999 78 5 5679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CC
Q 048695 488 LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~ 553 (846)
+.+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++||| .+
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 469999999999999 9999999987664 456677778999999999999999999999998 99
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|++|||||||||||+..+.++++.|++++++.|+|+|+ |||.+++..+|||+++|+ +|+++..|++++
T Consensus 164 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~ 232 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH-EGNVEQFGTPEE 232 (355)
T ss_dssp CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 99999999999999999999999999995556999999 999999999999999999 999999998743
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-39 Score=341.85 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=173.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+++ ..++.+|+|||+++++||++||+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 1 ~l~~~~l~~-~y~~~-~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTK-TYKMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEE-EEEET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEE-EeCCC-CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 478999999 78621 112569999999999999999999999999999999999985 999999999
Q ss_pred ----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC----------
Q 048695 488 ----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY---------- 551 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg---------- 551 (846)
+.+|||+|++.+++. ||+||+.++...+.....++++..+++.++++.+||.+. +++++++|||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 149999999999999 999999998765422234566777889999999999885 5999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..+++.|++++++.|+|||+ ||+++. .++|||+++|+ +|+++..+++.+
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~-~G~i~~~~~~~~ 231 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK-DGEVEREEKLRG 231 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEE-TTEEEEEEECC-
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEE-CCEEEEEcChhh
Confidence 9999999999999999999999999999995455999999 999985 58999999999 999999998753
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.2e-40 Score=349.51 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=177.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+|+++||++ .|+ ++++|+|||+++++||++||+||||||||||+|+|+|+.+ ++|+|.++|
T Consensus 10 ~~l~~~~l~~-~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHY-HVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEE-EeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 3799999999 786 6789999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+||++|++.+++. ||+||+.++...+ ..++.+++++++++.+||.+..++.+++||| .
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 358999999888777 9999999876433 2234456899999999999999999999998 6
Q ss_pred ------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC--C
Q 048695 553 ------CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS--N 623 (846)
Q Consensus 553 ------~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~--~ 623 (846)
+|++|||||||+|||+.++..++++|++++++.|+|||+ |||++++.++|||+++|+ +|++++.|++++ .
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~-~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA-QGKLVACGTPEEVLN 237 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHCC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHhC
Confidence 999999999999999999999999999995555689999 999999999999999999 999999999865 3
Q ss_pred hHHHHHHHh
Q 048695 624 HDIILDYFL 632 (846)
Q Consensus 624 ~~~l~~~f~ 632 (846)
.+.+.+.|.
T Consensus 238 ~~~l~~~~~ 246 (266)
T 4g1u_C 238 AETLTQWYQ 246 (266)
T ss_dssp HHHHHHHCC
T ss_pred cHHHHHHhC
Confidence 344555554
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-39 Score=344.80 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=172.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
+|+++||++ .|+ ++++|+|||+++++||+++|+||||||||||||+|+|+++ ++|+|.++|+
T Consensus 24 ~l~i~~l~~-~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 97 (263)
T 2olj_A 24 MIDVHQLKK-SFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97 (263)
T ss_dssp SEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHH
T ss_pred eEEEEeEEE-EEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHH
Confidence 699999999 786 5689999999999999999999999999999999999985 9999999982
Q ss_pred ---EEEEEeccCcCCCC-CHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------
Q 048695 489 ---LLCYVEKLDAHQTY-SVSESIQFSA-ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 489 ---~igyv~Q~~~~~~~-TV~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------ 551 (846)
.+|||+|++.+++. ||+||+.++. ..+ +.++++.+++++++++.+||.+..++++++|||
T Consensus 98 ~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 38999999988999 9999999965 332 334556667899999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++.++||++++|+ +|++++.|++
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l-~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i~~~g~~ 243 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQL-ANEGMTMVVVTHEMGFAREVGDRVLFMD-GGYIIEEGKP 243 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999 556999999 999999999999999999 9999999987
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-39 Score=358.76 Aligned_cols=191 Identities=23% Similarity=0.212 Sum_probs=177.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 3 ~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (362)
T 2it1_A 3 EIKLENIVK-KFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76 (362)
T ss_dssp CEEEEEEEE-ESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEeEEE-EEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCc
Confidence 589999999 786 5679999999999999999999999999999999999985 999999999 46
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++||| .+|+
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 77 VGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp EEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999999987654 445667778899999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|||||||||||+..+.++.+.|++++++.|+|+|+ |||.+++..+|||+++|+ +|+++..|+++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~ 219 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIR-EGEILQVGTPD 219 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999999999999995556999999 999999999999999999 99999999874
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-39 Score=342.07 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=173.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-----------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-----------~ 488 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++| +
T Consensus 15 ~l~i~~l~~-~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 15 AVVVKDLRK-RIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred eEEEEEEEE-EEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhh
Confidence 699999999 786 5789999999999999999999999999999999999985 999999999 2
Q ss_pred EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCC
Q 048695 489 LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCP 554 (846)
Q Consensus 489 ~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P 554 (846)
.+|||+|++.+++. ||+||+.+....+ +.+.++.+++++++++.+||++..++++++||| .+|
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 59999999988888 9999999976554 334555567899999999999999999999998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
++|||||||+|||+.++..++++|+++ ++.|+|||+ ||+.+++..+||++++|+ +|++++.|+++
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~l-~~~g~tiiivtHd~~~~~~~~d~v~~l~-~G~i~~~g~~~ 231 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNMLEVEFLCDRIALIH-NGTIVETGTVE 231 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEEECCHHHHTTTCSEEEEEE-TTEEEEEEEHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHH-HhCCCEEEEEcCCHHHHHHHCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999999999999 667999999 999999999999999999 99999999873
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-39 Score=359.60 Aligned_cols=192 Identities=19% Similarity=0.158 Sum_probs=176.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 3 ~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (359)
T 2yyz_A 3 SIRVVNLKK-YFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76 (359)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEEEEE-EEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCc
Confidence 589999999 786 5789999999999999999999999999999999999985 999999999 46
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++||| .+|+
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 77 VGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp EEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999999976543 344555567899999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||||||+..+.++++.|++++++.|.|+|+ |||.+++..+|||+++|+ +|+++..|++++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~ 220 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN-QGKLVQYGTPDE 220 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEeCCHHH
Confidence 999999999999999999999999995556999999 999999999999999999 999999998843
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-39 Score=341.96 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=172.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---e--------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---L-------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---~-------- 488 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+++ ++|+|.++| .
T Consensus 6 ~l~i~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 6 KLHVIDLHK-RYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEeeEEE-EEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 699999999 786 5689999999999999999999999999999999999985 999999998 2
Q ss_pred --------------EEEEEeccCcCCCC-CHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC
Q 048695 489 --------------LLCYVEKLDAHQTY-SVSESIQFSA-ALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY 551 (846)
Q Consensus 489 --------------~igyv~Q~~~~~~~-TV~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg 551 (846)
.+|||+|++.+++. ||+||+.++. ..+ +.++++.+++++++++.+||.+. +++++++|||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred ccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 28999999989999 9999999964 332 34455666789999999999999 9999999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+.+++..+|||+++|+ +|+++..
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l-~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i~~~ 234 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEE 234 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH-HHTTCCEEEECSCHHHHHHHCSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEe
Confidence 999999999999999999999999999999 556999999 999999999999999999 9999999
Q ss_pred cCC
Q 048695 618 GPR 620 (846)
Q Consensus 618 G~~ 620 (846)
|++
T Consensus 235 g~~ 237 (262)
T 1b0u_A 235 GDP 237 (262)
T ss_dssp ECH
T ss_pred CCH
Confidence 987
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.7e-39 Score=358.53 Aligned_cols=191 Identities=19% Similarity=0.167 Sum_probs=170.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 11 ~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 84 (372)
T 1v43_A 11 EVKLENLTK-RFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 84 (372)
T ss_dssp CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred eEEEEEEEE-EEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCc
Confidence 599999999 786 5689999999999999999999999999999999999985 999999999 46
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..+++. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++||| .+|+
T Consensus 85 ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 85 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp EEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999 9999999976543 445667778899999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|||||||||||+..+.++++.|++++++.|.|+|+ |||.+++..+|||+++|+ +|+++..|+++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~ 227 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN-RGQLLQIGSPT 227 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999995556999999 999999999999999999 99999999884
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.2e-39 Score=343.63 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=172.1
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+ ++++|+|||+++++||+++|+||||||||||||+|+|+++ .+|+|.++|
T Consensus 6 ~~l~i~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (257)
T 1g6h_A 6 EILRTENIVK-YFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79 (257)
T ss_dssp EEEEEEEEEE-EET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred cEEEEeeeEE-EEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3799999999 786 5689999999999999999999999999999999999985 999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhh-hcCC---------CCCHHHHHHHHHHHHHHcCCCcccccccCCccC---
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAAL-RVGK---------TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--- 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--- 551 (846)
+.+|||+|++.+++. ||+||+.++... +... ..++++.+++++++++.+||++.+++++++|||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHH
Confidence 149999999988888 999999986533 1110 022344567899999999999999999999998
Q ss_pred ----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|||+ ||+++++.++|||+++|+ +|++++.|++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i~~~g~~ 237 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLIIEHRLDIVLNYIDHLYVMF-NGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCCSTTGGGCSEEEEEE-TTEEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEEeCH
Confidence 999999999999999999999999999999 566999999 999999999999999999 9999999987
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-38 Score=354.44 Aligned_cols=191 Identities=20% Similarity=0.162 Sum_probs=176.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----e-------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----L------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----~------- 488 (846)
+|+++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| .
T Consensus 3 ~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWK-VFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEE-EEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 699999999 786 5789999999999999999999999999999999999985 999999998 1
Q ss_pred -----EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----------
Q 048695 489 -----LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------- 551 (846)
Q Consensus 489 -----~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------- 551 (846)
.+|||+|+..++|. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++|||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 38999999999999 9999999987665 455667778899999999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||||||+..+.++++.|++++++.|.|+|+ |||.+++..+|||+++|+ +|+++..|+++
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~ 225 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN-RGVLQQVGSPD 225 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe-CCEEEEeCCHH
Confidence 9999999999999999999999999999995556999999 999999999999999999 99999999874
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.8e-39 Score=355.45 Aligned_cols=192 Identities=21% Similarity=0.180 Sum_probs=176.4
Q ss_pred EEEEeceeeeeeccCCCCCcc--eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTP--LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------- 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~--iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------- 487 (846)
+|+++||++ .|+ ++. +|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++|
T Consensus 3 ~l~i~~l~~-~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSK-VFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEE-EEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEE-EEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 589999999 786 467 9999999999999999999999999999999999985 999999998
Q ss_pred -----eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------
Q 048695 488 -----LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------- 551 (846)
Q Consensus 488 -----~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------- 551 (846)
+.+|||+|+..+++. ||+||+.|+.+.+ +.++++.+++++++++.+||++.+++++++|||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 248999999999999 9999999976544 445667778899999999999999999999998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||||||+..+.++++.|++++++.|+|+|+ |||.+++..+|||+++|+ +|+++..|++++
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~ 227 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV-KGKLVQVGKPED 227 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 9999999999999999999999999999995556999999 999999999999999999 999999998753
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-39 Score=337.40 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=170.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ .|+ ++++|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 5 ~~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHV-YYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEE-EEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 3799999999 786 4679999999999999999999999999999999999985 999999999
Q ss_pred --eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCccC------------
Q 048695 488 --LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLG-LLPYSNQLVGSLHY------------ 551 (846)
Q Consensus 488 --~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~v~~lSg------------ 551 (846)
+.+|||+|++.+++. ||+||+.++.... .+.++..++++++++.++ |.+..++++++|||
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 139999999989999 9999999864211 123345567889999995 99999999999998
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+++.|+++ ++.|+|||+ ||+.+++.++|||+++|+ +|+++..|+++
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i~~~g~~~ 224 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNALGALKVAHYGYVLE-TGQIVLEGKAS 224 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHCSEEEEEE-TTEEEEEEEHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999999999999999999 557999999 999999999999999999 99999999874
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-38 Score=351.60 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=172.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
|++++||++ .|+ ++ +|+|||+++++||+++|+||||||||||||+|+|+.+ ++|+|.++| +.
T Consensus 1 ml~~~~l~~-~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 1 MIEIESLSR-KWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp CEEEEEEEE-ECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHT
T ss_pred CEEEEEEEE-EEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCc
Confidence 478999999 786 46 9999999999999999999999999999999999985 999999999 46
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|+..+++. ||+||+.|+.+.+ +.+++ ++++++++.+||++.+++++++||| .+|+
T Consensus 74 ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp CEEECTTCCCCTTSCHHHHHHHHHHHH---CCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHc---CCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999999987654 22222 6799999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|||||||||||+..+.++.+.|++++++.|+|+|+ |||.+++..+|||+++|+ +|+++..|++++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~ 214 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM-DGKLIQVGKPEE 214 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEES-SSCEEEEECHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999995566999999 999999999999999999 999999998753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-38 Score=329.35 Aligned_cols=185 Identities=20% Similarity=0.165 Sum_probs=166.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LL 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~ 489 (846)
+++++||++ .|+ + +|+|||+++++ |+++|+||||||||||||+|+|+.+ .+|+|.++| +.
T Consensus 1 ml~~~~l~~-~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 1 MFLKVRAEK-RLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp CCEEEEEEE-EET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSC
T ss_pred CEEEEEEEE-EeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCc
Confidence 378999999 785 2 49999999999 9999999999999999999999985 999999999 35
Q ss_pred EEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCc
Q 048695 490 LCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 490 igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~ 555 (846)
+|||+|++.+++. ||+||+.++...+ + ....+++++++++.+||.+..++++++||| .+|+
T Consensus 72 i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 72 IGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999989999 9999999864332 1 122356789999999999999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
+|+|||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|+++..|++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~-~G~i~~~g~~ 211 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999994455999999 999999999999999999 9999999986
No 21
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.5e-37 Score=329.44 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=166.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC--c-cccceEEEcCe---------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER--I-PFTGSLNGNVL--------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~-~~~G~I~~~G~--------- 488 (846)
+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||+|+|+|+ . |.+|+|.++|+
T Consensus 3 ~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWA-SID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEE-EEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 699999999 786 57899999999999999999999999999999999997 4 59999999991
Q ss_pred ----EEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC-CcccccccCC-ccC----------
Q 048695 489 ----LLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGL-LPYSNQLVGS-LHY---------- 551 (846)
Q Consensus 489 ----~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~v~~-lSg---------- 551 (846)
.++||+|++.+++. ||+||+.+..........+.++..++++++++.+|| .+..++++++ |||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 37899999999998 999999987542111112334556788999999999 5889999999 998
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEEEEecCCC
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+++.|+++ ++.|+|||+ ||+.+++..+ ||++++|+ +|+++..|+++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHd~~~~~~~~~d~v~~l~-~G~i~~~g~~~ 229 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAM-RGPNFGALVITHYQRILNYIQPDKVHVMM-DGRVVATGGPE 229 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH-CSTTCEEEEECSSSGGGGTSCCSEEEEEE-TTEEEEEESHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhcCCEEEEEE-CCEEEEEeCHH
Confidence 999999999999999999999999999999 667999999 9999999888 59999999 99999999873
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1e-37 Score=335.37 Aligned_cols=206 Identities=18% Similarity=0.206 Sum_probs=171.9
Q ss_pred CceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---e-----
Q 048695 418 EPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---L----- 488 (846)
Q Consensus 418 ~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---~----- 488 (846)
.+++++++||++ .|+ ++++|+|||+++++||+++|+||||||||||||+|+|+++ ++|+|.++| .
T Consensus 18 ~~~~l~~~~l~~-~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 18 SHMLIQLDQIGR-MKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp -CEEEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CC
T ss_pred CCceEEEEeEEE-EEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCC
Confidence 445899999999 786 5689999999999999999999999999999999999985 999999998 2
Q ss_pred ------EEEEEeccCcC-C-CC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------
Q 048695 489 ------LLCYVEKLDAH-Q-TY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------- 551 (846)
Q Consensus 489 ------~igyv~Q~~~~-~-~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------- 551 (846)
.+|||+|++.+ + +. ||+||+.++...+.. .....++..++++++++.+||++.+++++++|||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 38999998653 3 45 999999985321100 0112234456899999999999999999999998
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEE--EE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYC--LS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv--i~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||+|||+.++..++++|+++ +++|+|| |+ ||+.+++.++||++++|+ +|++++.|++++
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l-~~~g~tv~~iivtHd~~~~~~~~d~v~~l~-~G~i~~~g~~~~ 249 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSL-SDSYPTLAMIYVTHFIEEITANFSKILLLK-DGQSIQQGAVED 249 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH-HHHCTTCEEEEEESCGGGCCTTCCEEEEEE-TTEEEEEEEHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-HHCCCEEEEEEEecCHHHHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999999999 5559999 88 999999999999999999 999999998754
Q ss_pred --ChHHHHHHH
Q 048695 623 --NHDIILDYF 631 (846)
Q Consensus 623 --~~~~l~~~f 631 (846)
....+.++|
T Consensus 250 ~~~~~~~~~~~ 260 (279)
T 2ihy_A 250 ILTSENMSRFF 260 (279)
T ss_dssp HCSHHHHHHHH
T ss_pred HhccHHHHHHh
Confidence 223344444
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.1e-37 Score=324.55 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=169.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
+++++||++ .|++ ++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.+. +.+|||+|++.+
T Consensus 4 ~l~i~~l~~-~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~-~~i~~v~q~~~~ 77 (253)
T 2nq2_C 4 ALSVENLGF-YYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY-QSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEEE-EETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC-SCEEEECSCCCC
T ss_pred eEEEeeEEE-EeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe-ccEEEEcCCCcc
Confidence 799999999 7741 3579999999999999999999999999999999999985 99999864 679999999988
Q ss_pred CCC-CHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCC
Q 048695 500 QTY-SVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLS 564 (846)
Q Consensus 500 ~~~-TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTs 564 (846)
++. ||+||+.++...+... ....++.+++++++++.+||.+..++++++||| .+|++|||||||+
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 888 9999999875322110 012234456799999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 565 GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
|||+.++..+++.|++++++.|+|||+ ||+.+++.++||++++|+ +|+ ++.|++++
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~-~~~g~~~~ 214 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQN-FKFGETRN 214 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE-TTE-EEEEEHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe-CCe-EecCCHHH
Confidence 999999999999999994334999999 999999999999999999 999 99998754
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-37 Score=329.44 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=167.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe---------EE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL---------LL 490 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~---------~i 490 (846)
+++++||++ .|+.+....+.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|+ .+
T Consensus 2 ~l~~~~l~~-~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSH-IFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEE-EESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEE-EecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 589999999 774110001579999999999999999999999999999999999985 9999999992 48
Q ss_pred EEEeccC-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCccC-------------CC
Q 048695 491 CYVEKLD-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL--PYSNQLVGSLHY-------------HC 553 (846)
Q Consensus 491 gyv~Q~~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~v~~lSg-------------~~ 553 (846)
|||+|++ ..++. ||+||+.++...+ .++++.+++++++++.+||. +..++++++||| .+
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999995 45667 9999999865322 12223346789999999999 999999999998 99
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
|++|||||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++..+||++++|+ +|+++..|++
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l-~~~g~tii~vtHd~~~~~~~~d~v~~l~-~G~i~~~g~~ 222 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDIETVINHVDRVVVLE-KGKKVFDGTR 222 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCCTTTGGGCSEEEEEE-TTEEEEEEEH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999999 555999999 999999999999999999 9999999876
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-36 Score=325.62 Aligned_cols=198 Identities=16% Similarity=0.100 Sum_probs=169.1
Q ss_pred CCCceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcCe----
Q 048695 416 PVEPVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNVL---- 488 (846)
Q Consensus 416 ~~~~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G~---- 488 (846)
|....+++++||++ .|+ ++.+|+|||+++++||+++|+||||||||||||+|+|+. |.+|+|.++|+
T Consensus 15 ~~~~~~l~~~~l~~-~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 15 PRGSHMLSIKDLHV-SVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88 (267)
T ss_dssp -----CEEEEEEEE-EET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGG
T ss_pred CCCCceEEEEeEEE-EEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCc
Confidence 33344799999999 785 578999999999999999999999999999999999983 48999999991
Q ss_pred ---------EEEEEeccCcCCCC-CHHHHHHHHHh-hh--cC-CCCCHHHHHHHHHHHHHHcCCC-cccccccC-CccC-
Q 048695 489 ---------LLCYVEKLDAHQTY-SVSESIQFSAA-LR--VG-KTVNAMRRHIHVELVLNQLGLL-PYSNQLVG-SLHY- 551 (846)
Q Consensus 489 ---------~igyv~Q~~~~~~~-TV~E~l~f~a~-lr--~~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~-~lSg- 551 (846)
.+|||+|++.+++. ||+|++.+... .+ .. ...++++..++++++++.+||. +..+++++ +|||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 89 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp SCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred CCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 38999999999999 99999987642 21 11 1233455567899999999996 68899998 5998
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh-cCEEEEEccCCEEEEe
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF-FDLALILTKEGHQAYF 617 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~-~D~vllL~~~G~~v~~ 617 (846)
.+|++|||||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++..+ ||++++|+ +|+++..
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l-~~~g~tviivtHd~~~~~~~~~d~v~~l~-~G~i~~~ 246 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL-RDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT-CCSSCEEEEECSSGGGGGTSCCSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeeCHHHHHhhcCCEEEEEE-CCEEEEE
Confidence 899999999999999999999999999999 667999999 9999998886 89999999 9999999
Q ss_pred cCCC
Q 048695 618 GPRG 621 (846)
Q Consensus 618 G~~~ 621 (846)
|+++
T Consensus 247 g~~~ 250 (267)
T 2zu0_C 247 GDFT 250 (267)
T ss_dssp ECTT
T ss_pred cCHH
Confidence 9883
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9.3e-37 Score=326.85 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=163.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+|+++||++ .|++. +++.+|+|||+++++||+++|+||||||||||||+|+|+++ .+|+|.++|
T Consensus 15 ~~l~~~~l~~-~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSF-AYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEE-CCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEE-EeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 3699999999 78521 13679999999999999999999999999999999999985 999999999
Q ss_pred -eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHH-----HHHHHHHHHHHc--CCCcccccccCCccC--------
Q 048695 488 -LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMR-----RHIHVELVLNQL--GLLPYSNQLVGSLHY-------- 551 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~v~~lSg-------- 551 (846)
+.+|||+|++.+++.||+||+.++.... . ..++ ....++++++.+ ||++..++++++|||
T Consensus 92 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~l 167 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFGRSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVAL 167 (271)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHH
T ss_pred hccEEEEecCCccccccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHH
Confidence 2599999998776559999999864211 1 1011 223457788888 788889999999998
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+++.|++++++.|+|||+ ||+.+++.. ||++++|+ +|+++..|+++
T Consensus 168 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~-~G~i~~~g~~~ 241 (271)
T 2ixe_A 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLK-EGSVCEQGTHL 241 (271)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEE-TTEEEEEECHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999999999984446999999 999998864 99999999 99999999873
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.8e-36 Score=317.95 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=163.7
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
.+++++||++ . .+|+|||+++++||+++|+||||||||||||+|+|+.+ . |+|.++|
T Consensus 3 ~~l~~~~l~~---------~-~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 3 IVMQLQDVAE---------S-TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEEE---------T-TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHH
T ss_pred cEEEEEceEE---------E-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHH
Confidence 3799999998 2 68999999999999999999999999999999999985 8 9999999
Q ss_pred -eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------C
Q 048695 488 -LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------H 552 (846)
Q Consensus 488 -~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~ 552 (846)
+.+|||+|++.+++. ||+||+.++.. . ..+ +++++++++.+||++..++++++||| .
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 249999999988888 99999997521 1 111 45788999999999999999999998 8
Q ss_pred CCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 553 CPS-------ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~-------iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
+|+ +|||||||+|||+.++..+++.|+++ +++|+|||+ ||+.+++.++||++++|+ +|+++..|++++
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l-~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~~g~~~~ 219 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-SQQGLAIVMSSHDLNHTLRHAHRAWLLK-GGKMLASGRREE 219 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEEEHHH
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHH
Confidence 898 99999999999999999999999999 556999999 999999999999999999 999999998743
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-36 Score=311.48 Aligned_cols=179 Identities=15% Similarity=0.202 Sum_probs=158.6
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-------EEE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL-------LLC 491 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~-------~ig 491 (846)
.+|+++||++ .|+ + ++|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|+ .+|
T Consensus 9 ~~l~~~~ls~-~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSV-GYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81 (214)
T ss_dssp CEEEEEEEEE-ESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE
T ss_pred ceEEEEEEEE-EeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE
Confidence 3799999999 775 5 89999999999999999999999999999999999985 9999999993 489
Q ss_pred EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEE
Q 048695 492 YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSIL 557 (846)
Q Consensus 492 yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iL 557 (846)
||+|++.+++. ||+||+.++...+ +. +.+ +++++++++.+||++. ++++++||+ .+|++|
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~---~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLY---GV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHT---TC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhc---CC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999988888 9999999986543 11 122 4578899999999998 999999998 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEE
Q 048695 558 LLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~ 614 (846)
+|||||+|||+.++..+++.|+++ ++.|+|||+ ||+.+++..++|++++++ |++
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~~-~~~g~tiiivtHd~~~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILEI-LKEKGIVIISSREELSYCDVNENLHKYS--TKI 210 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHH-HHHHSEEEEEESSCCTTSSEEEEGGGGB--C--
T ss_pred EEECCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEeC--Ccc
Confidence 999999999999999999999999 556899999 999999999999998765 544
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-35 Score=314.22 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=156.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 7 ~~~~~~l~~-~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRF-RYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEE-ESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred ceeEEEEEE-EeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 589999999 7721 14679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc-----------cccCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN-----------QLVGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. ..+ .++++++++.+++.+..+ +.+++|||
T Consensus 83 ~~i~~v~Q~~~l~~~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qR 153 (247)
T 2ff7_A 83 RQVGVVLQDNVLLNRSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 153 (247)
T ss_dssp HHEEEECSSCCCTTSBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHH
T ss_pred hcEEEEeCCCccccccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHH
Confidence 35999999988775599999987521 112 234667777777765544 44578998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||+|||+.++..+++.|+++ + .|+|||+ ||+.+.+. .||++++|+ +|+++..|++
T Consensus 154 v~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~~~~~-~~d~v~~l~-~G~i~~~g~~ 227 (247)
T 2ff7_A 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRLSTVK-NADRIIVME-KGKIVEQGKH 227 (247)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSGGGGT-TSSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHH-hCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999 5 4899999 99998875 599999999 9999999986
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-35 Score=312.64 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=162.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCe---------EEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVL---------LLC 491 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~---------~ig 491 (846)
+++++||++ .|++. ...+.+|+|||++++ ||+++|+||||||||||||+|+|+.|.+|+|.++|+ .+|
T Consensus 1 ml~~~~l~~-~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGI-TLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEE-EEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEE-EeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheE
Confidence 478999999 78610 011679999999999 999999999999999999999998899999999992 589
Q ss_pred -EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCc
Q 048695 492 -YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 492 -yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~ 555 (846)
||+|++.+ . ||+||+.+...++ .. .+++++++++.+||. +..++++++||| .+|+
T Consensus 78 ~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 78 TNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp ECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999877 6 9999999976543 11 235688999999999 999999999998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcC-EEEEEccCCEEEEecCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFD-LALILTKEGHQAYFGPR 620 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D-~vllL~~~G~~v~~G~~ 620 (846)
+|+|||||+|||+.++..+++.|+++ ++ |||+ ||+.+++.++|| ++++|+ +|++++.|++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~L~~~-~~---tviivtHd~~~~~~~~d~~i~~l~-~G~i~~~g~~ 210 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISRYIKEY-GK---EGILVTHELDMLNLYKEYKAYFLV-GNRLQGPISV 210 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHS-CS---EEEEEESCGGGGGGCTTSEEEEEE-TTEEEEEEEH
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh-cC---cEEEEEcCHHHHHHhcCceEEEEE-CCEEEEecCH
Confidence 99999999999999999999999998 43 8888 999999999999 999999 9999999987
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.3e-35 Score=320.32 Aligned_cols=183 Identities=20% Similarity=0.231 Sum_probs=155.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.|+++||++ .|++ ++.+|+|||+++++||++||+||||||||||+++|+|+++ .+|+|.++|
T Consensus 53 ~i~~~~vs~-~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 53 RIEFENVHF-SYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp CEEEEEEEE-ESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHH
T ss_pred eEEEEEEEE-EcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHh
Confidence 699999999 7852 4679999999999999999999999999999999999984 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-----------ccccccCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-----------YSNQLVGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~v~~lSg----- 551 (846)
+.+|||+|++.+++.||+|||.++... ... ++++++++.+++.+ ..++...+|||
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQR 198 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHH
Confidence 369999999988744999999986421 112 23445555555543 34445567887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||||||||||||+.++..|++.|+++ .+ ++|+|+ +|+++.+.. ||+|++|+ +|+++..|+++
T Consensus 199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l-~~-~~Tvi~itH~l~~~~~-aD~i~vl~-~G~iv~~G~~~ 273 (306)
T 3nh6_A 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV-CA-NRTTIVVAHRLSTVVN-ADQILVIK-DGCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH-HT-TSEEEEECCSHHHHHT-CSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEEcChHHHHc-CCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999998 44 689999 999999876 99999999 99999999984
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-35 Score=312.92 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=157.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|+ +++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|
T Consensus 1 ml~~~~l~~-~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDF-AYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEE-CSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEE-EeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 478999999 773 14679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-----------cCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-----------VGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. + ..+ .++++++++.+++.+..++. +++|||
T Consensus 76 ~~i~~v~q~~~l~~~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 76 SQIGFVSQDSAIMAGTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTCCEECCSSCCCCEEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred hhEEEEcCCCccccccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 25899999987765599999987521 1 112 23577889999988766543 568888
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||+|||+.++..+++.|+++ + .|+|||+ ||+.+.+. .||++++|+ +|+++..|+++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i~~~g~~~ 222 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-M-KGRTTLVIAHRLSTIV-DADKIYFIE-KGQITGSGKHN 222 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH-H-TTSEEEEECCSHHHHH-HCSEEEEEE-TTEECCCSCHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh-c-CCCEEEEEeCChHHHH-hCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999999999999 5 5999999 99998875 599999999 99999888773
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.8e-34 Score=307.44 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=155.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------e
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------L 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~ 488 (846)
+++++||++ .|++. .++.+|+|||+++++||+++|+||||||||||||+|+|+++.+|+|.++| +
T Consensus 17 ~l~i~~l~~-~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNF-SYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEE-CCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEE-EeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhc
Confidence 699999999 77521 12579999999999999999999999999999999999986689999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-----------cccccCCccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-----------SNQLVGSLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~v~~lSg------ 551 (846)
.+|||+|++.+++.||+||+.++.. ... .+++.++++.+++.+. .++.+.+|||
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred cEEEEcCCCcccccCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 5999999988774499999987421 111 2345677777776543 2356678998
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|||||||+|||+.++..+++.|+++ ++ |+|||+ ||+.+.+. .||++++|+ +|+++..|+++
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l-~~-~~tviivtH~~~~~~-~~d~i~~l~-~G~i~~~g~~~ 238 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RK-NRTLIIIAHRLSTIS-SAESIILLN-KGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH-TT-TSEEEEECSSGGGST-TCSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHHHHH-hCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999 55 899999 99998875 599999999 99999999873
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-34 Score=301.28 Aligned_cols=182 Identities=17% Similarity=0.240 Sum_probs=149.8
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCc
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~ 498 (846)
.+++++||++ .|++ +++++|+|||+++++||+++|+||||||||||||+|+|+++ .+|+|.++| .+||++|++.
T Consensus 5 ~~l~~~~l~~-~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~i~~v~q~~~ 79 (229)
T 2pze_A 5 TEVVMENVTA-FWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQFSW 79 (229)
T ss_dssp EEEEEEEEEE-CSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-CEEEECSSCC
T ss_pred ceEEEEEEEE-EeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-EEEEEecCCc
Confidence 4799999999 7741 24689999999999999999999999999999999999985 999999998 5999999987
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-----------cccccCCccC-------------CCC
Q 048695 499 HQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-----------SNQLVGSLHY-------------HCP 554 (846)
Q Consensus 499 ~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~v~~lSg-------------~~P 554 (846)
+++.||+||+.++.. ... .+++++++.+++.+. .++.+++||| .+|
T Consensus 80 ~~~~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 80 IMPGTIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp CCSBCHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred ccCCCHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 765699999987531 111 123344455555432 2334578998 999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNI-LSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
++|+|||||+|||+.++..+++. ++++ + .|+|||+ ||+.+++. .||++++|+ +|+++..|++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i~~~g~~ 213 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILH-EGSSYFYGTF 213 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCC-T-TTSEEEEECCCHHHHH-HCSEEEEEE-TTEEEEEECH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHh-h-CCCEEEEEcCChHHHH-hCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999997 4666 4 4889999 99998875 599999999 9999999986
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=324.47 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=162.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------ 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------ 487 (846)
..|+++||++ .|+. +++.+|+|||+++++||+++|+||||||||||||+|+|+.+.+|+|.++|
T Consensus 18 ~~i~~~~l~~-~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 18 GQMTVKDLTA-KYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCEEEEEEEE-ESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHH
T ss_pred CeEEEEEEEE-EecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHh
Confidence 3699999999 7842 25789999999999999999999999999999999999988889999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-----------ccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGS-----------LHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~-----------lSg----- 551 (846)
+.+|||+|++.+++.||+||+.+.. .. .+++++++++.++|.+..++++++ |||
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQR 163 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQL 163 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHH
Confidence 4699999999888669999996421 11 134678999999999999999988 998
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|||||||||||+..+.++.+.|+++ . .|+|+|+ ||+.+ +...|||+++|+ +|+++..|++.+
T Consensus 164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~-~~~tvi~vtHd~e-~~~~aDri~vl~-~G~i~~~g~~~e 239 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-F-ADCTVILCEARIE-AMLECDQFLVIE-ENKVRQYDSILE 239 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-T-TTSCEEEECSSSG-GGTTCSEEEEEE-TTEEEEESSHHH
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-h-CCCEEEEEEcCHH-HHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999999987 3 4788888 99975 556799999999 999999998843
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=298.14 Aligned_cols=184 Identities=20% Similarity=0.251 Sum_probs=149.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
+++++||++ .|++ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ .+|+|.++| .+|||+|++.+
T Consensus 3 ~l~~~~l~~-~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~~ 77 (237)
T 2cbz_A 3 SITVRNATF-TWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-SVAYVPQQAWI 77 (237)
T ss_dssp CEEEEEEEE-ESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-CEEEECSSCCC
T ss_pred eEEEEEEEE-EeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEEEEcCCCcC
Confidence 589999999 7752 13679999999999999999999999999999999999985 999999998 59999999864
Q ss_pred CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHH---HHHHcCCCc-----ccccccCCccC-------------CCCcEE
Q 048695 500 QTY-SVSESIQFSAALRVGKTVNAMRRHIHVEL---VLNQLGLLP-----YSNQLVGSLHY-------------HCPSIL 557 (846)
Q Consensus 500 ~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~---~l~~l~L~~-----~~~~~v~~lSg-------------~~P~iL 557 (846)
+. ||+||+.++... ..+ ..+++.+ +++.+++.+ ..++++.+||| .+|++|
T Consensus 78 -~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 78 -QNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp -CSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred -CCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 57 999999875321 111 1112222 233344322 35678899998 999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 558 LLEEPLSGVDTIGTLTILNILS---LCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 558 lLDEPTsgLD~~~~~~i~~~l~---~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
||||||+|||+.++..+++.|+ ++ + .|+|||+ ||+.+.+ ..||++++|+ +|+++..|+++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~-~~~d~v~~l~-~G~i~~~g~~~ 213 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYL-PQVDVIIVMS-GGKISEMGSYQ 213 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTG-GGSSEEEEEE-TTEEEEEECHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHH-HhCCEEEEEe-CCEEEEeCCHH
Confidence 9999999999999999999995 44 3 4899999 9999887 4799999999 99999999874
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.98 E-value=2e-32 Score=324.72 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=158.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------e
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------L 488 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------~ 488 (846)
++++||++ .|++. .++++|+|||+++++||++||+||||||||||+|+|+|+.+ ++|+|.+|| +
T Consensus 342 i~~~~v~~-~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHF-AYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEE-ECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEE-EeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 89999999 78521 13579999999999999999999999999999999999985 999999999 3
Q ss_pred EEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------cccc----CCccC------
Q 048695 489 LLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-------NQLV----GSLHY------ 551 (846)
Q Consensus 489 ~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~v----~~lSg------ 551 (846)
.+|||+|++.+++.||+||+.++...+ .+. .+++++++++.+++.+.. |+.+ .+|||
T Consensus 419 ~i~~v~Q~~~l~~~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 419 KIGTVSQEPILFSCSIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp SEEEECSSCCCCSSBHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred ceEEEccCCcccCCCHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 699999999887669999999863211 011 234678888888876543 3333 67887
Q ss_pred -------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 -------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 -------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+|||||||||+.++..+.+.|+++ ++ |+|+|+ +|+.+.+. .|||+++|+ +|+++..|++++
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i~~~g~~~~ 567 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MD-GRTVLVIAHRLSTIK-NANMVAVLD-QGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHH-HT-TSEEEEECCCHHHHH-HSSEEEEEE-TTEEEEEECSCC
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHH-hc-CCEEEEEecCHHHHH-cCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999999998 55 799999 99998875 599999999 999999999865
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.5e-32 Score=324.86 Aligned_cols=189 Identities=22% Similarity=0.280 Sum_probs=155.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++++|+|+|+++++||++||+||||||||||+|+|+|+++ .+|+|.+||
T Consensus 341 ~i~~~~v~~-~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 341 SVSFENVEF-RYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CEEEEEEEE-CSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred cEEEEEEEE-EcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 599999999 7752 25689999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHH-----HHHHHHHc--CCCcccccccCCccC---------
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIH-----VELVLNQL--GLLPYSNQLVGSLHY--------- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~-----v~~~l~~l--~L~~~~~~~v~~lSg--------- 551 (846)
+.+|||+|++.+++.||+||+.++.. ..+.++..+. +++.++.+ |++...++...+|||
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred hheEEECCCCcCcCccHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 46999999998885599999987531 1222222111 12223332 455555666778898
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|++|+||||||+||+.++..+.+.|+++ . +|+|+|+ +|+++.+ ..|||+++|+ +|+++..|++++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~~~-~~~d~i~vl~-~G~i~~~g~~~e 563 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-T-KGCTTFIITQKIPTA-LLADKILVLH-EGKVAGFGTHKE 563 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-S-TTCEEEEEESCHHHH-TTSSEEEEEE-TTEEEEEECHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecChHHH-HhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999999998 4 4899999 9999887 4899999999 999999999854
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=4.8e-32 Score=320.70 Aligned_cols=185 Identities=19% Similarity=0.211 Sum_probs=158.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|++ +++++|+|+|+++++||++||+||||||||||+|+|+|+.+ ++|+|.+||
T Consensus 341 ~i~~~~v~~-~y~~---~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 341 EVDVKDVTF-TYQG---KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred eEEEEEEEE-EcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 699999999 7852 12679999999999999999999999999999999999984 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-----------cCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQL-----------VGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. + ..+ +++++++++.+++.+..++. ..+|||
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr 488 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHH
Confidence 46999999998876699999998531 1 112 24577888888877655444 357887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||||||+.++..+.+.|+++ ++ |+|+|+ +|+.+.+. .||++++|+ +|+++..|+++
T Consensus 489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i~~~g~~~ 563 (582)
T 3b5x_A 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDEL-QK-NKTVLVIAHRLSTIE-QADEILVVD-EGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHHHHH-hCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999998 54 899999 99998875 699999999 99999999874
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=5e-32 Score=320.56 Aligned_cols=184 Identities=17% Similarity=0.157 Sum_probs=157.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++++||++ .|++ +++++|+|+|+++++||++||+||||||||||+|+|+|+.+ ++|+|.+||
T Consensus 341 ~i~~~~v~~-~y~~---~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 341 DLEFRNVTF-TYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CEEEEEEEE-CSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred cEEEEEEEE-EcCC---CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 599999999 7852 12679999999999999999999999999999999999984 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccc-----------ccCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQ-----------LVGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. + ..+ +++++++++.+++.+..++ ...+|||
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qr 488 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 488 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 36999999998876699999998531 1 122 2457778888877655443 3467887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++|+|||||||||+.++..+.+.|+++ ++ |+|+|+ +|+.+.+. .|||+++|+ +|+++..|++
T Consensus 489 l~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i~~~g~~ 562 (582)
T 3b60_A 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK-NRTSLVIAHRLSTIE-QADEIVVVE-DGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH-HT-TSEEEEECSCGGGTT-TCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hC-CCEEEEEeccHHHHH-hCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999998 54 899999 99998875 699999999 9999999987
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=3.4e-32 Score=321.61 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=154.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ +++++|+|||+++++||++||+||||||||||+|+|+|+.+ ++|+|.+||
T Consensus 339 ~i~~~~v~~-~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 339 RIDIDHVSF-QYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CEEEEEEEE-CSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEE-EcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 599999999 7752 24679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-----------ccccCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYS-----------NQLVGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. ..+. +++.+.++..++.+.. ++...+|||
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 36999999998886699999987521 1122 3455666666654433 333457887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||||||+.++..+.+.++++ + +|+|+|+ +|+++.+. .|||+++|+ +|+++..|+++
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~l~~~~-~~d~i~~l~-~G~i~~~g~~~ 560 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-S-KDRTTLIVAHRLSTIT-HADKIVVIE-NGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-T-TTSEEEEECSSGGGTT-TCSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHH-cCCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999998 4 4789999 99999875 599999999 99999999984
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=5.5e-32 Score=292.10 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=136.4
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~ 499 (846)
+++++||++ . .+.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++| .+|||+|++.+
T Consensus 40 ~l~~~~l~~-~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~l 110 (290)
T 2bbs_A 40 SLSFSNFSL-L-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQNSWI 110 (290)
T ss_dssp ------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-CEEEECSSCCC
T ss_pred eEEEEEEEE-c-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EEEEEeCCCcc
Confidence 699999998 3 2579999999999999999999999999999999999985 999999998 59999999877
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-----------cccccCCccC-------------CCCc
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-----------SNQLVGSLHY-------------HCPS 555 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~v~~lSg-------------~~P~ 555 (846)
++.||+||+. +. + ... .++++.++.+++.+. .++.+++||| .+|+
T Consensus 111 ~~~tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 111 MPGTIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp CSSBHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred CcccHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 6669999998 32 1 111 123445555555432 2234578998 9999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 556 ILLLEEPLSGVDTIGTLTILNI-LSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 556 iLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
+|+|||||+|||+.++..+++. ++++ + .|+|||+ ||+.+++. .||++++|+ +|+++..|+++
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~-~-~~~tviivtHd~~~~~-~~d~i~~l~-~G~i~~~g~~~ 243 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILH-EGSSYFYGTFS 243 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCC-T-TTSEEEEECCCHHHHH-HSSEEEEEE-TTEEEEEECHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHh-h-CCCEEEEEecCHHHHH-cCCEEEEEE-CCeEEEeCCHH
Confidence 9999999999999999999997 4566 4 4899999 99998875 699999999 99999999873
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=7.2e-32 Score=319.92 Aligned_cols=183 Identities=19% Similarity=0.246 Sum_probs=155.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++ ++++|+|||+++++||++||+||||||||||+|+|+|+.+ ++|+|.+||
T Consensus 354 ~i~~~~v~~-~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 354 EIEFKNVWF-SYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CEEEEEEEC-CSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEE-ECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHH
Confidence 599999999 7852 4679999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc-----------CCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLV-----------GSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-----------~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. ..++ ++++++++..++.+..++.+ .+|||
T Consensus 429 ~~i~~v~Q~~~lf~~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 429 SSIGIVLQDTILFSTTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp HHEEEECTTCCCCSSBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred hceEEEeCCCccccccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 36999999998886699999987521 1122 23556666666655444433 57887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|++|+|||||||||+.++..+.+.|+++ . +|+|+|+ +|+++.+.. ||++++|+ +|+++..|+++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~l~~~~~-~d~i~~l~-~G~i~~~g~~~ 574 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL-M-EGKTSIIIAHRLNTIKN-ADLIIVLR-DGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHH-H-TTSEEEEESCCTTHHHH-CSEEEEEC-SSSEEECSCHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHHc-CCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999998 4 4899999 999998755 99999999 99999999884
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.4e-30 Score=300.45 Aligned_cols=201 Identities=12% Similarity=0.086 Sum_probs=168.9
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccC
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLD 497 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~ 497 (846)
...++++|+++ .|+ ...|+++|+++++||+++|+||||||||||+|+|+|+.+ ++|+|.++|+.++|++|+.
T Consensus 267 ~~~l~~~~l~~-~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~ 339 (538)
T 3ozx_A 267 KTKMKWTKIIK-KLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339 (538)
T ss_dssp CEEEEECCEEE-EET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSC
T ss_pred cceEEEcceEE-EEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhc
Confidence 35799999999 775 256888899999999999999999999999999999985 9999999999999999987
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
..... ||+|++.+..... .. .....++++++.++|.+.+++++++||| .+|++|||||||
T Consensus 340 ~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 340 FPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 66667 9999998742111 11 1124578999999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC--CEEEEecCCCCChHHHHHHHhh
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE--GHQAYFGPRGSNHDIILDYFLL 633 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~--G~~v~~G~~~~~~~~l~~~f~~ 633 (846)
+|||+.++..++++|++++++.|.|||+ |||++++..+|||+++|+ + |+....+++.+....+..++..
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~-~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEFLRE 485 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-EETTTEEEECCCEEHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe-CCcceeccCCChHHHHHHHHHHHhh
Confidence 9999999999999999996667999999 999999999999999998 5 5566666665433344455544
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=8.1e-30 Score=301.02 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=164.7
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccC
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLD 497 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~ 497 (846)
..+++++|+++ .|+ + ..|+++|+++++||++||+||||||||||||+|+|+.+ .+|+|.++ +.+||++|+.
T Consensus 355 ~~~l~~~~l~~-~~~-----~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~ 426 (607)
T 3bk7_A 355 ETLVEYPRLVK-DYG-----S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYI 426 (607)
T ss_dssp CEEEEECCEEE-ECS-----S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSC
T ss_pred ceEEEEeceEE-Eec-----c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCc
Confidence 45899999999 775 2 47999999999999999999999999999999999985 99999884 6799999998
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
...+. ||+|++....... ....++++++|+.+||.+.+++.+++||| .+|++|||||||
T Consensus 427 ~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 427 KAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp CCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 77677 9999887641111 01135688999999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC--CEEEEecCCCC
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE--GHQAYFGPRGS 622 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~--G~~v~~G~~~~ 622 (846)
+|||+.++..++++|++++++.|.|||+ |||.+++..+|||+++|+ + |+++..|++.+
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~-~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGRALPPMG 560 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-EETTTEEEECCCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-CCcceEEecCCHHH
Confidence 9999999999999999995567999999 999999999999999998 6 88888999854
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=5.8e-30 Score=299.12 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=164.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccC
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLD 497 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~ 497 (846)
..+++++|+++ .|+ + ..|+++|+++++||++||+||||||||||||+|+|+.+ .+|+|.++ ..+||++|+.
T Consensus 285 ~~~l~~~~l~~-~~~-----~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~ 356 (538)
T 1yqt_A 285 ETLVTYPRLVK-DYG-----S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYI 356 (538)
T ss_dssp CEEEEECCEEE-EET-----T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSC
T ss_pred CeEEEEeeEEE-EEC-----C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCC
Confidence 45799999998 775 2 47999999999999999999999999999999999985 99999874 6799999998
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCC
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPL 563 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPT 563 (846)
...+. ||.|++........ ...++++++++.+||.+..++++++||| .+|++|||||||
T Consensus 357 ~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 357 KADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp CCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 77677 99998875311110 1134688899999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC--CEEEEecCCCC
Q 048695 564 SGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE--GHQAYFGPRGS 622 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~--G~~v~~G~~~~ 622 (846)
+|||+.++..++++|++++++.|.|||+ |||.+++..+|||+++|+ + |+++..|++++
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~-~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYGRALPPMG 490 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE-EETTTEEEECCCEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe-CCcceEeecCCHHH
Confidence 9999999999999999995567999999 999999999999999998 6 78888999854
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=2.4e-29 Score=321.40 Aligned_cols=186 Identities=21% Similarity=0.287 Sum_probs=158.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------ 487 (846)
.++++||++ +|+. +.++++|+|||++++|||.+||+||||||||||+++|.|++ |.+|+|++||
T Consensus 1076 ~I~f~nVsf-~Y~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1076 KVIFKNVRF-AYPE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CEEEEEEEE-CCTT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred eEEEEEEEE-eCCC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 599999999 8852 22467999999999999999999999999999999999998 5999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg----- 551 (846)
+++|||||++.+|+.|+||||.++.. |...+ ++++.++++..++.+. .|+.+|+ |||
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~~gld---~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQr 1225 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENIIYGLD---PSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHSSSSC---TTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHH
T ss_pred hheEEECCCCEeeCccHHHHHhccCC---CCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHH
Confidence 57999999999998899999987632 11222 3457778888877543 4566653 676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|+||+||||||+||+++...|.+.|+++ .+|+|+|+ +|.++.+ ..||||++|+ +|+++++|++
T Consensus 1226 iaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~--~~~~TvI~IAHRLsTi-~~aD~I~Vld-~G~IvE~Gth 1299 (1321)
T 4f4c_A 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA--REGRTCIVIAHRLNTV-MNADCIAVVS-NGTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT--SSSSEEEEECSSSSTT-TTCSEEEEES-SSSEEEEECH
T ss_pred HHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH--cCCCEEEEeccCHHHH-HhCCEEEEEE-CCEEEEECCH
Confidence 899999999999999999999999999986 45899999 9988776 4599999999 9999999998
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=4.4e-29 Score=318.27 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=152.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|+. +.++++|+|||+++++||++||+||||||||||+++|+|+++ .+|+|.++|
T Consensus 387 ~i~~~~v~~-~y~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 387 NLEFKNIHF-SYPS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CEEEEEEEE-CCSS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEE-EcCC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 599999999 7852 124579999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-----------cccccccCCccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-----------PYSNQLVGSLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~v~~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++.. ..+.+ ++++.++..++. ........+|||
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGRE-----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHCS-----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCCC-----CCCHH----HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH
Confidence 35999999998887799999998742 12222 233444443332 222334446887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+||||||+||+.+...+.+.++++ . +|+|+|+ +|+++.+.. ||+|++|+ +|++++.|+.+
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~l~~i~~-~d~i~vl~-~G~i~~~g~~~ 609 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-R-EGRTTIVIAHRLSTVRN-ADVIAGFD-GGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH-H-TTSEEEEECSCHHHHTT-CSEEEECS-SSCCCCEECHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHHc-CCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999987 4 5899999 999998865 99999999 99999999874
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=6.9e-29 Score=316.49 Aligned_cols=187 Identities=24% Similarity=0.324 Sum_probs=153.6
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|++. .++++|+|||+++++||++||+||||||||||+++|+|+.+ .+|+|.+||
T Consensus 1030 ~i~~~~v~~-~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1030 NVQFSGVVF-NYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CEEEEEEEB-CCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred cEEEEEEEE-ECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 599999999 78521 13479999999999999999999999999999999999984 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccC----CccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVG----SLHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~----~lSg----- 551 (846)
+.+|||+|++.+++.||+||+.++...+ ..+.+ .+.+.++..++.+. .|+.+| +|||
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCC---CCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHH
Confidence 4699999999877669999998753211 22222 34455555555433 334443 5787
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
.+|+||+|||||||||+.++..|.+.|++. ..|+|+|+ +|+++++. .||||++|+ +|+++..|+++
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~--~~~~tvi~isH~l~~i~-~~dri~vl~-~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--REGRTCIVIAHRLSTIQ-NADLIVVIQ-NGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH--SSSSCEEEECSCTTGGG-SCSEEEEEE-TBEEEEEECHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--CCCCEEEEEecCHHHHH-cCCEEEEEE-CCEEEEECCHH
Confidence 899999999999999999999999999986 45899999 99999985 599999999 99999999984
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-28 Score=285.78 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=154.8
Q ss_pred eceeeeeeccCCCCCcceeeceeeEEeCC-----eEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCc
Q 048695 425 EGLTFSRYEEGSNESTPLFSYVTCYAKPQ-----NMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDA 498 (846)
Q Consensus 425 ~~l~~~~~~~~~~~~~~iL~~vs~~v~~G-----e~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~ 498 (846)
+++++ .|+. .+.+++|+|+++++| |+++|+|||||||||||++|+|+.+ ++|+. +.+..++|++|+..
T Consensus 350 ~~~~~-~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~~~~i~~~~q~~~ 423 (608)
T 3j16_B 350 ASRAF-SYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIA 423 (608)
T ss_dssp SSSCC-EECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CCSCCEEEECSSCC
T ss_pred cceeE-EecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-ccCCcEEEeccccc
Confidence 44555 4531 245789999999998 7899999999999999999999985 88984 34467999999876
Q ss_pred CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCC
Q 048695 499 HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLS 564 (846)
Q Consensus 499 ~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTs 564 (846)
.... ||+|++.... + ... ...+.++++++.++|.+.+++.+++||| .+|++|||||||+
T Consensus 424 ~~~~~tv~e~~~~~~--~--~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 424 PKFPGTVRQLFFKKI--R--GQF---LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp CCCCSBHHHHHHHHC--S--STT---TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccCCccHHHHHHHHh--h--ccc---ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 6556 9999875422 2 111 1124578899999999999999999998 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccC--CEEEEecCCCC
Q 048695 565 GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKE--GHQAYFGPRGS 622 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~--G~~v~~G~~~~ 622 (846)
|||+.++..++++|++++++.|.|||+ |||++++..+|||+++|+ + |+++..|+|.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~-~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE-GIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE-EETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe-CCCCeEEecCChHH
Confidence 999999999999999995567999999 999999999999999998 5 89999999976
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=4.5e-28 Score=309.75 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=157.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
.++++||++ .|+. ..++++|+|||+++++||.+||+||||||||||+++|.|.++ .+|+|.+||
T Consensus 415 ~I~~~nvsF-~Y~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 415 DITVENVHF-TYPS--RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CEEEEEEEE-CCSS--STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred cEEEEEeee-eCCC--CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 599999999 7852 235789999999999999999999999999999999999985 999999999
Q ss_pred eEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC----ccC-----
Q 048695 488 LLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-------SNQLVGS----LHY----- 551 (846)
Q Consensus 488 ~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~v~~----lSg----- 551 (846)
+.+|||+|++.++..||+|||.|+.. ..+ ++++.++++..++.+. .|+.+|+ |||
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR 562 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH
T ss_pred hcccccCCcceeeCCchhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH
Confidence 47999999999887799999998631 122 3457777777776443 3555553 676
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||+||||||+||+++.+.+.+.|+++ . +|+|+|+ +|..+.+ +.||+|++|+ +|+++..|+.++
T Consensus 563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~-~-~~~T~iiiaHrls~i-~~aD~Iivl~-~G~ive~Gth~e 638 (1321)
T 4f4c_A 563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA-A-KGRTTIIIAHRLSTI-RNADLIISCK-NGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH-H-TTSEEEEECSCTTTT-TTCSEEEEEE-TTEEEEEECHHH
T ss_pred HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH-h-CCCEEEEEcccHHHH-HhCCEEEEee-CCeeeccCCHHH
Confidence 999999999999999999999999999998 3 5889888 8888765 6799999999 999999998743
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=1.3e-27 Score=282.23 Aligned_cols=168 Identities=16% Similarity=0.109 Sum_probs=143.3
Q ss_pred eceeeeeeccCCCCCc-ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceE---------EEcC------
Q 048695 425 EGLTFSRYEEGSNEST-PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSL---------NGNV------ 487 (846)
Q Consensus 425 ~~l~~~~~~~~~~~~~-~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I---------~~~G------ 487 (846)
+||++ .|+ ++ .+|+|+| .+++||+++|+||||||||||||+|+|++ |.+|++ .++|
T Consensus 95 ~~ls~-~yg-----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~ 167 (607)
T 3bk7_A 95 EDCVH-RYG-----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY 167 (607)
T ss_dssp GSEEE-ECS-----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH
T ss_pred CCeEE-EEC-----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh
Confidence 88888 775 33 5999999 99999999999999999999999999997 588986 4555
Q ss_pred --------eEEEEEeccCcCCC---C-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----
Q 048695 488 --------LLLCYVEKLDAHQT---Y-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---- 551 (846)
Q Consensus 488 --------~~igyv~Q~~~~~~---~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---- 551 (846)
..+++++|.....+ . ||+|++.. . . ..++++++|+.+||++..++++++|||
T Consensus 168 ~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~---~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQ 235 (607)
T 3bk7_A 168 FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V---D-----EVGKFEEVVKELELENVLDRELHQLSGGELQ 235 (607)
T ss_dssp HHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T---C-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHH
T ss_pred hhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h---H-----HHHHHHHHHHHcCCCchhCCChhhCCHHHHH
Confidence 24788888643222 3 99999863 1 1 113578899999999999999999998
Q ss_pred ---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 552 ---------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 552 ---------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
.+|++|||||||+|||+.++..++++|+++ ++.|.|||+ |||++++..++||+++|+ ++.
T Consensus 236 RvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l-~~~g~tvIivsHdl~~~~~~adri~vl~-~~~ 305 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEP 305 (607)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHCSEEEEEE-SCT
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEecChHHHHhhCCEEEEEC-CCc
Confidence 999999999999999999999999999999 567999999 999999999999999998 653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.4e-27 Score=278.89 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=143.0
Q ss_pred EEE-eceeeeeeccCCCCCc-ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceE---------EEcC--
Q 048695 422 FVF-EGLTFSRYEEGSNEST-PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSL---------NGNV-- 487 (846)
Q Consensus 422 l~~-~~l~~~~~~~~~~~~~-~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I---------~~~G-- 487 (846)
.++ +||++ .|+ ++ .+|+||| .+++||++||+||||||||||||+|+|++ |++|++ .++|
T Consensus 21 ~~~~~~ls~-~yg-----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVH-RYG-----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEE-ECS-----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEE-EEC-----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCcc
Confidence 455 58999 786 33 5899999 99999999999999999999999999997 588985 3555
Q ss_pred ------------eEEEEEeccCcCCC---C-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC
Q 048695 488 ------------LLLCYVEKLDAHQT---Y-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY 551 (846)
Q Consensus 488 ------------~~igyv~Q~~~~~~---~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg 551 (846)
..+++++|+....+ . ||.|++... +..++++++|+.+||++..++++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~------------~~~~~~~~~l~~lgl~~~~~~~~~~LSg 161 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA------------DETGKLEEVVKALELENVLEREIQHLSG 161 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH------------CSSSCHHHHHHHTTCTTTTTSBGGGCCH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh------------hHHHHHHHHHHHcCCChhhhCChhhCCH
Confidence 24789998743322 3 899987531 0123578899999999999999999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.+|++|||||||++||+.++..+++.|+++ ++.|.|||+ ||+++++..+|||+++|+ +|
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l-~~~g~tvi~vsHd~~~~~~~~dri~vl~-~~ 234 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEEGKSVLVVEHDLAVLDYLSDIIHVVY-GE 234 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHCSEEEEEE-EE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEc-Cc
Confidence 999999999999999999999999999999 567999999 999999999999999998 54
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=2.1e-27 Score=289.66 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=154.0
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-eEEEEEecc
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV-LLLCYVEKL 496 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G-~~igyv~Q~ 496 (846)
..+++++||++ .|++ +++++|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++| ..+||++|+
T Consensus 669 ~~mL~v~nLs~-~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~ 744 (986)
T 2iw3_A 669 KAIVKVTNMEF-QYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744 (986)
T ss_dssp SEEEEEEEEEE-CCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHH
T ss_pred CceEEEEeeEE-EeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccc
Confidence 45899999999 7752 13679999999999999999999999999999999999985 999999998 579999998
Q ss_pred CcC----CCC-CHHHHHHHHHhhh------------cC------------------------------------------
Q 048695 497 DAH----QTY-SVSESIQFSAALR------------VG------------------------------------------ 517 (846)
Q Consensus 497 ~~~----~~~-TV~E~l~f~a~lr------------~~------------------------------------------ 517 (846)
..+ ... |++|++.+..... ..
T Consensus 745 ~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ 824 (986)
T 2iw3_A 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824 (986)
T ss_dssp HHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence 532 224 8898887632100 00
Q ss_pred ----------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCc-c-cccccCCccC
Q 048695 518 ----------KTV--------N--------------------------AMRRHIHVELVLNQLGLLP-Y-SNQLVGSLHY 551 (846)
Q Consensus 518 ----------~~~--------~--------------------------~~~~~~~v~~~l~~l~L~~-~-~~~~v~~lSg 551 (846)
... + +....++++++|+.+||.+ . .++++++|||
T Consensus 825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSG 904 (986)
T 2iw3_A 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSG 904 (986)
T ss_dssp ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCH
T ss_pred hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCH
Confidence 000 0 0011356889999999985 4 6889999998
Q ss_pred -------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 -------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 -------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|||||||+|||+.+...+++.|+++ |.|||+ ||+.+++.++||++++|+ +|+++..
T Consensus 905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrVivL~-~G~Iv~~ 979 (986)
T 2iw3_A 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWAVK-DGRMTPS 979 (986)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEECCB-TTBCCC-
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEe
Confidence 999999999999999999999999888764 568999 999999999999999999 9999877
Q ss_pred cC
Q 048695 618 GP 619 (846)
Q Consensus 618 G~ 619 (846)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=1.5e-26 Score=282.18 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=148.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------eEEEEEe
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------LLLCYVE 494 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------~~igyv~ 494 (846)
.+...|+++ .|+ ++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +| .+++|++
T Consensus 435 ~L~~~~ls~-~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~~~~~~v~ 501 (986)
T 2iw3_A 435 DLCNCEFSL-AYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEECRTVYVE 501 (986)
T ss_dssp EEEEEEEEE-EET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTTSCEEETT
T ss_pred eeEEeeEEE-EEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccceeEEEEc
Confidence 577779999 786 5789999999999999999999999999999999994 222 22 2478999
Q ss_pred ccC-cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC-------------CCCcEEE
Q 048695 495 KLD-AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY-------------HCPSILL 558 (846)
Q Consensus 495 Q~~-~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg-------------~~P~iLl 558 (846)
|+. .+++. ||.|++.+ ... +. +++++++|+.+||. +..++++++||| .+|++||
T Consensus 502 q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 502 HDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp CCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 874 56777 99999976 111 11 45789999999995 688999999998 9999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE-EecCC
Q 048695 559 LEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA-YFGPR 620 (846)
Q Consensus 559 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v-~~G~~ 620 (846)
|||||+|||+.++..+.+.|++ .|.|||+ ||+++++.++||++++|+ +|+++ +.|++
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~-~G~iv~~~G~~ 630 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYE-GLKLRKYKGNF 630 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEESCH
T ss_pred EECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEE-CCeeecCCCCH
Confidence 9999999999999999999987 4899999 999999999999999999 99997 67876
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=1.5e-26 Score=278.17 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=124.7
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHH---------------------HHHcCCc-cc-------cceEEEcC--
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLL---------------------QCLAERI-PF-------TGSLNGNV-- 487 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL---------------------~~LaG~~-~~-------~G~I~~~G-- 487 (846)
++.+|+|||+++++||++||+||||||||||+ ++++|+. |. .|.|.++|
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 7777765 34 56677776
Q ss_pred ------eEEEEEeccCcC-------------------CCC-CHHHHHHHHHhhhcCCCCCHHHHH------HHHHHHHHH
Q 048695 488 ------LLLCYVEKLDAH-------------------QTY-SVSESIQFSAALRVGKTVNAMRRH------IHVELVLNQ 535 (846)
Q Consensus 488 ------~~igyv~Q~~~~-------------------~~~-TV~E~l~f~a~lr~~~~~~~~~~~------~~v~~~l~~ 535 (846)
+.+|+|+|...+ ++. ||+||+.+...+.... ...+... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHH
Confidence 345666654322 356 9999998754332111 0000000 112246889
Q ss_pred cCCCcc-cccccCCccC-------------CCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhH
Q 048695 536 LGLLPY-SNQLVGSLHY-------------HCPS--ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYART 598 (846)
Q Consensus 536 l~L~~~-~~~~v~~lSg-------------~~P~--iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i 598 (846)
+||.+. +++++++||| .+|+ +|||||||+|||+.++..++++|+++ ++.|.|||+ |||++.+
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l-~~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIVVEHDEDTM 267 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-HHTTCEEEEECCCHHHH
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHH
Confidence 999875 7999999998 7877 99999999999999999999999999 677999999 9999876
Q ss_pred HhhcCEEEEE------ccCCEEEEecCCCC
Q 048695 599 VPFFDLALIL------TKEGHQAYFGPRGS 622 (846)
Q Consensus 599 ~~~~D~vllL------~~~G~~v~~G~~~~ 622 (846)
. .||++++| + +|++++.|++++
T Consensus 268 ~-~~d~ii~l~~g~~~~-~G~i~~~g~~~~ 295 (670)
T 3ux8_A 268 L-AADYLIDIGPGAGIH-GGEVVAAGTPEE 295 (670)
T ss_dssp H-HCSEEEEECSSSGGG-CCSEEEEECHHH
T ss_pred h-hCCEEEEeccccccc-CCEEEEecCHHH
Confidence 5 59999999 7 999999998854
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=3.4e-25 Score=266.29 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=131.0
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHc----------------------CCccccceEEEcCeE--------
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLA----------------------ERIPFTGSLNGNVLL-------- 489 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~La----------------------G~~~~~G~I~~~G~~-------- 489 (846)
+.+|+|||+++++||++||+||||||||||+++|. |+.+..|.|.++|+.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998753 333344566666511
Q ss_pred ---------------------------------------------EEEEeccCcCC------------------------
Q 048695 490 ---------------------------------------------LCYVEKLDAHQ------------------------ 500 (846)
Q Consensus 490 ---------------------------------------------igyv~Q~~~~~------------------------ 500 (846)
.|++.|+..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 12233221111
Q ss_pred --------CC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC-------------CC---C
Q 048695 501 --------TY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY-------------HC---P 554 (846)
Q Consensus 501 --------~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~~---P 554 (846)
.. ||+||+.+.... ...+++.+.++.+||.+ ..++++++||| .+ |
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p 565 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGR 565 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCC
Confidence 14 888888874321 12245678889999975 56899999998 44 5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 555 SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 555 ~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
++|||||||+|||+.++..++++|+++ ++.|+|||+ |||++.+ +.|||+++| + +|++++.|+++
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l-~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~-~G~i~~~g~~~ 636 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDR-GGQIVAVGTPE 636 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECCCHHHH-TTCSEEEEEESSSGGG-CCEEEEEECHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCC-CCEEEEecCHH
Confidence 799999999999999999999999999 677999999 9999876 569999999 7 99999999873
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.5e-25 Score=258.77 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=135.4
Q ss_pred ceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceE-----------EEcC------
Q 048695 426 GLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSL-----------NGNV------ 487 (846)
Q Consensus 426 ~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I-----------~~~G------ 487 (846)
|+++ +|+. +...|++++ .+++||++||+||||||||||||+|+|++ |.+|+| .+.|
T Consensus 82 ~~~~-~Y~~----~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~ 155 (608)
T 3j16_B 82 HVTH-RYSA----NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155 (608)
T ss_dssp TEEE-ECST----TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHH
T ss_pred CeEE-EECC----CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhh
Confidence 4555 5541 345677777 68999999999999999999999999998 599998 3444
Q ss_pred ------eE--EEEEeccCcC------CCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-
Q 048695 488 ------LL--LCYVEKLDAH------QTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY- 551 (846)
Q Consensus 488 ------~~--igyv~Q~~~~------~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg- 551 (846)
+. ..+.+|.... .+. ++.+++.... ++..++++++++.+||.+..++.+++|||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 225 (608)
T 3j16_B 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDIEKLSGG 225 (608)
T ss_dssp HHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCTTTCCHH
T ss_pred hhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCChHHCCHH
Confidence 01 1223332111 122 4555544210 11235688999999999999999999998
Q ss_pred ------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEe
Q 048695 552 ------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYF 617 (846)
Q Consensus 552 ------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~ 617 (846)
.+|++|+|||||+|||+.++..+.++|+++ ++.|.|||+ ||+++++..++||+++|+ +|+.++.
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHdl~~~~~~~drv~vl~-~~~~~~~ 302 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL-LAPTKYVICVEHDLSVLDYLSDFVCIIY-GVPSVYG 302 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG-GTTTCEEEEECSCHHHHHHHCSEEEEEE-SCTTTEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEe-CCccccc
Confidence 999999999999999999999999999999 677999999 999999999999999998 7765543
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=9.1e-25 Score=254.72 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=123.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceE-----------EEcCe--------------EEEEEecc----CcC
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSL-----------NGNVL--------------LLCYVEKL----DAH 499 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I-----------~~~G~--------------~igyv~Q~----~~~ 499 (846)
.++||++||+||||||||||||+|+|++ |++|+| .++|+ .+....|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 4699999999999999999999999997 599998 45651 23333333 222
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCC
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGV 566 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgL 566 (846)
...||+|++.-. +.+++++++++.+||.+..++.+++||| .+|++|+||||||||
T Consensus 102 ~~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~L 169 (538)
T 3ozx_A 102 LKGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYL 169 (538)
T ss_dssp CCSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred ccCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 222888865421 1123577899999999999999999998 899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE
Q 048695 567 DTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA 615 (846)
Q Consensus 567 D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v 615 (846)
|+.++..+.++|+++ ++ |+|||+ +|+++++..+||++++|+ +|...
T Consensus 170 D~~~~~~l~~~l~~l-~~-g~tii~vsHdl~~~~~~~d~i~vl~-~~~~~ 216 (538)
T 3ozx_A 170 DVRERMNMAKAIREL-LK-NKYVIVVDHDLIVLDYLTDLIHIIY-GESSV 216 (538)
T ss_dssp CHHHHHHHHHHHHHH-CT-TSEEEEECSCHHHHHHHCSEEEEEE-EETTT
T ss_pred CHHHHHHHHHHHHHH-hC-CCEEEEEEeChHHHHhhCCEEEEec-CCccc
Confidence 999999999999999 65 899999 999999999999999998 65443
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=4.6e-23 Score=249.46 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCc-ccccccCCccC-------------C---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEE
Q 048695 527 IHVELVLNQLGLLP-YSNQLVGSLHY-------------H---CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYC 589 (846)
Q Consensus 527 ~~v~~~l~~l~L~~-~~~~~v~~lSg-------------~---~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 589 (846)
++++++|+.+||.. ..++.+.+||| . +|+||||||||+|||+.++..++++|+++ ++.|.||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L-~~~G~tV 786 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL-VDAGNTV 786 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEE
Confidence 46889999999988 46899999998 4 48999999999999999999999999999 6789999
Q ss_pred EE-ecChhhHHhhcCEEEEE------ccCCEEEEecCC
Q 048695 590 LS-NTPYARTVPFFDLALIL------TKEGHQAYFGPR 620 (846)
Q Consensus 590 i~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~ 620 (846)
|+ +|+++++ +.||++++| + +|+++..|++
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~-~G~Iv~~g~~ 822 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGED-GGRLVAQGTP 822 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGG-CCSEEEEECH
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCC-CCEEEEEcCH
Confidence 99 9999998 789999999 6 8999999987
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=8e-23 Score=247.48 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCc-ccccccCCccC-------------C---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEE
Q 048695 528 HVELVLNQLGLLP-YSNQLVGSLHY-------------H---CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCL 590 (846)
Q Consensus 528 ~v~~~l~~l~L~~-~~~~~v~~lSg-------------~---~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi 590 (846)
++.++|+.+||.. ..++.+++||| . +|+||||||||+|||+.++..+++.|+++ ++.|.|||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L-~~~G~TVI 902 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVL 902 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEE
Confidence 4578999999998 78999999998 4 36999999999999999999999999999 67899999
Q ss_pred E-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 591 S-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 591 ~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
+ +|+++++ +.||++++| + +|+++..|+++
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~-~G~Iv~~g~~~ 938 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDR-GGQIVAVGTPE 938 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTS-CCSEEEEESHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCC-CCEEEEecCHH
Confidence 9 9999987 689999999 5 89999999873
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=2.7e-22 Score=244.63 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=89.9
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC-------------C---CCcEEEEeCCCCC
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY-------------H---CPSILLLEEPLSG 565 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-------------~---~P~iLlLDEPTsg 565 (846)
||.|++.|.... ...+++.++|+.+||... .++++++||| . +|+||||||||+|
T Consensus 768 tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsG 838 (916)
T 3pih_A 768 TVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG 838 (916)
T ss_dssp BHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTT
T ss_pred CHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCC
Confidence 677777764321 123467889999999764 5789999998 3 4689999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
||+.++..+++.|+++ ++.|.|||+ +|+++.+. .||+|++| + +|++++.|+++
T Consensus 839 LD~~~~~~L~~lL~~L-~~~G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~-~G~Iv~~Gtpe 898 (916)
T 3pih_A 839 LHFEDVRKLVEVLHRL-VDRGNTVIVIEHNLDVIK-NADHIIDLGPEGGKE-GGYIVATGTPE 898 (916)
T ss_dssp CCHHHHHHHHHHHHHH-HHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGG-CCEEEEEESHH
T ss_pred CCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHH-hCCEEEEecCCCCCC-CCEEEEEcCHH
Confidence 9999999999999999 778999999 99998875 59999999 7 99999999983
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=2.5e-22 Score=244.00 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCc-ccccccCCccC-------------C---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEE
Q 048695 528 HVELVLNQLGLLP-YSNQLVGSLHY-------------H---CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCL 590 (846)
Q Consensus 528 ~v~~~l~~l~L~~-~~~~~v~~lSg-------------~---~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi 590 (846)
++.++|+.+||.. ..++.+++||| . +|+||||||||+|||+.++..++++|+++ ++.|.|||
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L-~~~G~TVI 920 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL-VDKGNTVI 920 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhCCCEEE
Confidence 4578999999987 78999999998 4 36999999999999999999999999999 67899999
Q ss_pred E-ecChhhHHhhcCEEEEE------ccCCEEEEecCCC
Q 048695 591 S-NTPYARTVPFFDLALIL------TKEGHQAYFGPRG 621 (846)
Q Consensus 591 ~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~ 621 (846)
+ +|+++++ +.||++++| + +|++++.|+++
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~-~G~Iv~~G~~~ 956 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAG-GGTVVAQGTPE 956 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTS-CSEEEEEECHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCC-CCEEEEecCHH
Confidence 9 9999987 689999999 5 89999999874
No 64
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=4e-26 Score=234.49 Aligned_cols=172 Identities=16% Similarity=0.041 Sum_probs=123.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC--------eEEEEEeccCcCCCC-CHHHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV--------LLLCYVEKLDAHQTY-SVSESI 508 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G--------~~igyv~Q~~~~~~~-TV~E~l 508 (846)
.+.+++| .++++||+++|+||||||||||+|+|+|+.+ ..+.+.+.+ +.++|++|+...++. |+.|++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 4678888 7999999999999999999999999999985 222222221 458999999877777 887776
Q ss_pred HHHHhhhc---CCCCCHHHHHHHHHHH------HHHcCCCcccccccCCccC--CCCcEEEEeCCCCCC----CHHHHHH
Q 048695 509 QFSAALRV---GKTVNAMRRHIHVELV------LNQLGLLPYSNQLVGSLHY--HCPSILLLEEPLSGV----DTIGTLT 573 (846)
Q Consensus 509 ~f~a~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~v~~lSg--~~P~iLlLDEPTsgL----D~~~~~~ 573 (846)
........ ..+.++++.++++++. ++.+|+.+.++++++.+|. .+|++++|||||+|| |+..+.+
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~ 165 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRR 165 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 42211100 0123455666677776 7788888888999999988 899999999999998 7889999
Q ss_pred HHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 574 ILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 574 i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
+.+.+++++++.|.|+|+ |||++++.++|||+++|.+.|
T Consensus 166 l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 166 LDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhccCC
Confidence 999999995566899999 999999999999999997444
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8e-26 Score=258.64 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=145.3
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc-e-EEEcC---eEEEEE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG-S-LNGNV---LLLCYV 493 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G-~-I~~~G---~~igyv 493 (846)
.+++++||++ .|+ ++|+.+++|++++|+||||||||||+|+|+|+.+ .+| + |.++| +.++|+
T Consensus 117 ~mi~~~nl~~-~y~-----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~v 184 (460)
T 2npi_A 117 TMKYIYNLHF-MLE-----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTV 184 (460)
T ss_dssp THHHHHHHHH-HHH-----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSC
T ss_pred chhhhhhhhe-hhh-----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeee
Confidence 3577888887 552 7999999999999999999999999999999985 999 9 99998 679999
Q ss_pred eccCc---CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC---------------CCC
Q 048695 494 EKLDA---HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------------HCP 554 (846)
Q Consensus 494 ~Q~~~---~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------------~~P 554 (846)
+|+.. +.+. ||+||+ |+.....+ . ...++++++++.+||++..+ +.+||+ .+|
T Consensus 185 pq~~~l~~~~~~~tv~eni-~~~~~~~~--~---~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 185 PGCISATPISDILDAQLPT-WGQSLTSG--A---TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SSCCEEEECCSCCCTTCTT-CSCBCBSS--C---CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccchhhcccccccchhhhh-cccccccC--c---chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCc
Confidence 99974 3455 999998 65432111 1 11234667888999988776 778887 799
Q ss_pred cE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh------hHHhhcCE-----EEEEccCCEEEEe
Q 048695 555 SI----LLLEE-PLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA------RTVPFFDL-----ALILTKEGHQAYF 617 (846)
Q Consensus 555 ~i----LlLDE-PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~------~i~~~~D~-----vllL~~~G~~v~~ 617 (846)
++ ||||| ||+|||+. ...+.+++++ .|+|+|+ +|+.+ ++.+++|+ +++|+++|+++ .
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~ 330 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-A 330 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-C
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-E
Confidence 99 99999 99999999 4444444443 4677777 77766 77899999 99998689998 8
Q ss_pred cCCCCC----hHHHHHHHhh
Q 048695 618 GPRGSN----HDIILDYFLL 633 (846)
Q Consensus 618 G~~~~~----~~~l~~~f~~ 633 (846)
|++++. ...+.+||..
T Consensus 331 g~~~~~~~~~~~~i~~~f~g 350 (460)
T 2npi_A 331 VDDVYKRSLQRTSIREYFYG 350 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHhhhhHHHHHHHhCC
Confidence 876431 2345567654
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.83 E-value=8.7e-21 Score=214.99 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=125.4
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---------------------------------------cc
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP---------------------------------------FT 480 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---------------------------------------~~ 480 (846)
..+++++++++++| +++|+|||||||||||++|+++.. .+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45789999999999 999999999999999999965442 36
Q ss_pred ceEEEcC-------------eEEEEEeccCcCCCCCHHHHHHHHHhhh-----------------------cCCCC----
Q 048695 481 GSLNGNV-------------LLLCYVEKLDAHQTYSVSESIQFSAALR-----------------------VGKTV---- 520 (846)
Q Consensus 481 G~I~~~G-------------~~igyv~Q~~~~~~~TV~E~l~f~a~lr-----------------------~~~~~---- 520 (846)
|++.+|| ..+++++|++.++..+..+...|.-... .-...
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8899999 1289999987655433333333211100 00000
Q ss_pred ------------------------------CHHHHHHHHHHHHHHcCCCccc----------------c-----------
Q 048695 521 ------------------------------NAMRRHIHVELVLNQLGLLPYS----------------N----------- 543 (846)
Q Consensus 521 ------------------------------~~~~~~~~v~~~l~~l~L~~~~----------------~----------- 543 (846)
..+...+.+++.++.+++.+.. +
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0011224566677777765410 0
Q ss_pred ---cccCC-ccC-------------CCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcC
Q 048695 544 ---QLVGS-LHY-------------HCP--SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFD 603 (846)
Q Consensus 544 ---~~v~~-lSg-------------~~P--~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D 603 (846)
++++. +|| .+| ++|||||||+|||+.++..+.+.|+++ + +|.+||+ ||+.+. ...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l-~-~~~~vi~itH~~~~-~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-A-DTRQVLVVTHLAQI-AARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH-T-TTSEEEEECSCHHH-HTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCcHHH-HhhcC
Confidence 22222 587 788 999999999999999999999999999 5 5899999 999855 57899
Q ss_pred EEEEE----ccCCEEEEecC
Q 048695 604 LALIL----TKEGHQAYFGP 619 (846)
Q Consensus 604 ~vllL----~~~G~~v~~G~ 619 (846)
++++| + +|+++....
T Consensus 364 ~i~~l~k~~~-~G~~~~~~~ 382 (415)
T 4aby_A 364 HHYKVEKQVE-DGRTVSHVR 382 (415)
T ss_dssp EEEEEEEEEE-TTEEEEEEE
T ss_pred eEEEEEEecc-CCceEEEEE
Confidence 99999 8 999876644
No 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.77 E-value=1.6e-21 Score=219.42 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=125.4
Q ss_pred CcceeeceeeEEeCCe--------------------EEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeE---EEEEe
Q 048695 439 STPLFSYVTCYAKPQN--------------------MFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLL---LCYVE 494 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge--------------------~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~---igyv~ 494 (846)
.+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+ .+|+|.++|.. .+|++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec
Confidence 3578999999999999 999999999999999999999985 99999999832 38999
Q ss_pred ccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------------------
Q 048695 495 KLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---------------------- 551 (846)
Q Consensus 495 Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---------------------- 551 (846)
|++ .++. |+.|++.++. + +.+++++++.+++.+...... +|+
T Consensus 115 q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 115 KHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp ECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHHhcCCCeE
Confidence 985 5667 9988875431 0 124788899999987543332 443
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh----hcC----cEEEE-ecChhh--HHhhcCEEE-EEccCCE
Q 048695 552 ---HCPSILLLEEPLSGVDTIGTLTILNILSLCQI----RSG----HYCLS-NTPYAR--TVPFFDLAL-ILTKEGH 613 (846)
Q Consensus 552 ---~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~----~~g----~tvi~-~h~~~~--i~~~~D~vl-lL~~~G~ 613 (846)
++|++++|||||+|||+..+.++++.++++++ +.| .+|++ +|..++ +.+++|++. .|. +|+
T Consensus 180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp-eg~ 255 (413)
T 1tq4_A 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP-IYK 255 (413)
T ss_dssp EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC-GGG
T ss_pred EEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc-cch
Confidence 39999999999999999999999999999842 322 45666 998887 888899885 444 544
No 68
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=4.8e-21 Score=200.97 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=102.4
Q ss_pred ceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHc--CC-ccccceEEEcC-----------eEEEEEeccCcCCCC-CH
Q 048695 441 PLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLA--ER-IPFTGSLNGNV-----------LLLCYVEKLDAHQTY-SV 504 (846)
Q Consensus 441 ~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~La--G~-~~~~G~I~~~G-----------~~igyv~Q~~~~~~~-TV 504 (846)
..|+++ .+.+++|++++|+||||||||||+++|+ |. .+.+|.+.+++ +.+|+++|+....+. ++
T Consensus 17 ~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 345554 3489999999999999999999999999 66 34677777776 346777776444444 44
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC-----HHHHHHHHHHHH
Q 048695 505 SESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD-----TIGTLTILNILS 579 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD-----~~~~~~i~~~l~ 579 (846)
.++........ .......++..++.+..++....++..+|+++++||||++|| +..+..+.++++
T Consensus 97 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~ 166 (251)
T 2ehv_A 97 VDGVSSVVGLP----------SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNT 166 (251)
T ss_dssp EC-----------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHH
T ss_pred EEccccccccc----------cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHH
Confidence 44332211100 001111222223333333333333447899999999999998 677777999999
Q ss_pred HHHhhcCcEEEE-ecChhhH---------Hhhc-CEEEEEc
Q 048695 580 LCQIRSGHYCLS-NTPYART---------VPFF-DLALILT 609 (846)
Q Consensus 580 ~l~~~~g~tvi~-~h~~~~i---------~~~~-D~vllL~ 609 (846)
.+ ++.|+|||+ ||+.+++ ..+| |++++|+
T Consensus 167 ~l-~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 167 IL-LEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HH-HHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HH-HHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99 778999999 9999988 6888 9999996
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.76 E-value=2.1e-18 Score=192.26 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=64.2
Q ss_pred ccccCCccC-------------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhc
Q 048695 543 NQLVGSLHY-------------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFF 602 (846)
Q Consensus 543 ~~~v~~lSg-------------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~ 602 (846)
++++++||| .+|++|||||||+|||+.++..+++.|+++ ++.|.|||+ ||+++. .+.+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l-~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG-GGSSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCCEEEEEecchHH-HHhC
Confidence 567888998 299999999999999999999999999999 677999999 999987 6789
Q ss_pred CEEEEEccCCEEEE
Q 048695 603 DLALILTKEGHQAY 616 (846)
Q Consensus 603 D~vllL~~~G~~v~ 616 (846)
|++++|+ +|+++.
T Consensus 352 d~~~~l~-~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRIT-GGVVVN 364 (365)
T ss_dssp SCEEEEE-TTEEC-
T ss_pred CEEEEEE-CCEEEe
Confidence 9999999 999864
No 70
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=2.4e-21 Score=226.42 Aligned_cols=156 Identities=9% Similarity=-0.023 Sum_probs=124.5
Q ss_pred Ccceeeceee-EEeCCeEEEEEcCCCCChhhHHHH--HcCCcc-ccceEEEcC-----------eEEEEEeccCcCCCCC
Q 048695 439 STPLFSYVTC-YAKPQNMFALLGGSRTSKVTLLQC--LAERIP-FTGSLNGNV-----------LLLCYVEKLDAHQTYS 503 (846)
Q Consensus 439 ~~~iL~~vs~-~v~~Ge~~al~GpsGaGKSTLL~~--LaG~~~-~~G~I~~~G-----------~~igyv~Q~~~~~~~T 503 (846)
+.++|++|++ .+++||+++|+||||||||||+++ ++|+.+ .+|.|+++| +.+||++|+....+.
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~- 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK- 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-
Confidence 5789999999 999999999999999999999999 789986 899999998 457888886432111
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCC-----CCCHHHHHHHHHHH
Q 048695 504 VSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS-----GVDTIGTLTILNIL 578 (846)
Q Consensus 504 V~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs-----gLD~~~~~~i~~~l 578 (846)
+.+ +... . . +...++++.++|.+..++.+..+|+.+|+++++||||+ +||+..+..+.+++
T Consensus 103 ----l~~---~~~~-~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll 168 (525)
T 1tf7_A 103 ----LFI---LDAS-P-D-----PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLV 168 (525)
T ss_dssp ----EEE---EECC-C-C-----SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHH
T ss_pred ----EEE---EecC-c-c-----cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHH
Confidence 000 0000 0 0 01223556677777788888899999999999999998 56999999999999
Q ss_pred HHHHhhcCcEEEE-ecChhhH---------HhhcCEEEEEccC
Q 048695 579 SLCQIRSGHYCLS-NTPYART---------VPFFDLALILTKE 611 (846)
Q Consensus 579 ~~l~~~~g~tvi~-~h~~~~i---------~~~~D~vllL~~~ 611 (846)
+++ ++.|+|||+ +|+.+++ ..+||++++|+ +
T Consensus 169 ~~l-~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~-~ 209 (525)
T 1tf7_A 169 ARL-KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR-N 209 (525)
T ss_dssp HHH-HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE-E
T ss_pred HHH-HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEE-E
Confidence 999 668999999 9999884 45699999998 6
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.76 E-value=6.4e-21 Score=196.01 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=88.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc---------CeEEEEEeccCcCCCCCHHHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN---------VLLLCYVEKLDAHQTYSVSESI 508 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~---------G~~igyv~Q~~~~~~~TV~E~l 508 (846)
++.+|+|| ++||+++|+|||||||||||++|+|+ + ++|+|... .+.+||++|++ +||+
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl 79 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKI 79 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHH
Confidence 56799996 89999999999999999999999999 6 88988431 14688998874 4444
Q ss_pred -HHHH----hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048695 509 -QFSA----ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--HCPSILLLEEPLSGVDTIGTLTILNILSLC 581 (846)
Q Consensus 509 -~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l 581 (846)
.+.. .+. ... ..++++++++. |+.. .+++.=... .+|++|||||||+| ++..+++.|+++
T Consensus 80 ~~~~~~~~~~~~--~~~----~~~~~~~~l~~-glGq--~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l 146 (208)
T 3b85_A 80 DPYLRPLHDALR--DMV----EPEVIPKLMEA-GIVE--VAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL 146 (208)
T ss_dssp CTTTHHHHHHHT--TTS----CTTHHHHHHHT-TSEE--EEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB
T ss_pred HHHHHHHHHHHH--Hhc----cHHHHHHHHHh-CCch--HHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh
Confidence 2211 111 001 12357777877 6611 111111111 89999999999999 889999999987
Q ss_pred HhhcCcEEEEecChhhHH
Q 048695 582 QIRSGHYCLSNTPYARTV 599 (846)
Q Consensus 582 ~~~~g~tvi~~h~~~~i~ 599 (846)
+ .|+|||+|||.+++.
T Consensus 147 -~-~g~tiivtHd~~~~~ 162 (208)
T 3b85_A 147 -G-FGSKMVVTGDITQVD 162 (208)
T ss_dssp -C-TTCEEEEEEC-----
T ss_pred -c-CCCEEEEECCHHHHh
Confidence 4 478877888887653
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.75 E-value=1e-19 Score=181.16 Aligned_cols=131 Identities=12% Similarity=0.038 Sum_probs=89.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC-eEEEEEeccCcCCC-C-CHHHHHHHHHhhhcCCCCC
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV-LLLCYVEKLDAHQT-Y-SVSESIQFSAALRVGKTVN 521 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G-~~igyv~Q~~~~~~-~-TV~E~l~f~a~lr~~~~~~ 521 (846)
|||+++++||+++|+||||||||||+|++.+-.+ .+++ ...|+++|+..... . ++.+.+....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~--------- 66 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----VISSDFCRGLMSDDENDQTVTGAAFDVLHYIV--------- 66 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----EEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHH---------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----EEccHHHHHHhcCcccchhhHHHHHHHHHHHH---------
Confidence 6899999999999999999999999998765322 2222 22366777643211 1 3333332211
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHH----------------HHH
Q 048695 522 AMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTI----------------GTL 572 (846)
Q Consensus 522 ~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~----------------~~~ 572 (846)
+.....|.....+.... .|+ .+|++|+|||||+|||+. .+.
T Consensus 67 ---------~~~~~~g~~~~~~~~~~-~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~ 136 (171)
T 4gp7_A 67 ---------SKRLQLGKLTVVDATNV-QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQ 136 (171)
T ss_dssp ---------HHHHHTTCCEEEESCCC-SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHH
T ss_pred ---------HHHHhCCCeEEEECCCC-CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHH
Confidence 11122344333332221 122 899999999999999999 669
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhhHHh
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYARTVP 600 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~i~~ 600 (846)
.+++.|+++ +++|.|+|+ +|+++++.+
T Consensus 137 ~l~~~l~~l-~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 137 QMKKSIKGL-QREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHSTTH-HHHTCSEEEEECSHHHHHH
T ss_pred HhhhhhhhH-HhcCCcEEEEeCCHHHhhh
Confidence 999999999 556999999 999988864
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=1.1e-19 Score=197.20 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=119.9
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----e--------------EEEEEeccCc-CCCC
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----L--------------LLCYVEKLDA-HQTY 502 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----~--------------~igyv~Q~~~-~~~~ 502 (846)
++++|+.+++|++++|+||||||||||++.|+|+++ .+|+|.++| + .++|++|++. +.+.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 467899999999999999999999999999999975 899999988 1 4899999988 8888
Q ss_pred -CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------CCCc--EEEEeCCCCCCCHH
Q 048695 503 -SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPS--ILLLEEPLSGVDTI 569 (846)
Q Consensus 503 -TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~--iLlLDEPTsgLD~~ 569 (846)
||+|++.++.. + +.. ..+++.+|+.+..++++++||. .+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 99999998642 1 110 1356788888888888888886 6899 99999 99999987
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ec---------ChhhHHhhcCEEEEEccCCEE
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NT---------PYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h---------~~~~i~~~~D~vllL~~~G~~ 614 (846)
.+ ++++.++.|.|+|+ || ..+.+....+.|.++. .|+.
T Consensus 237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~-~Ge~ 284 (302)
T 3b9q_A 237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGEA 284 (302)
T ss_dssp HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE-CSSS
T ss_pred HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe-CCCC
Confidence 54 35563456899888 88 3445555667888888 7754
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.72 E-value=1.3e-17 Score=182.76 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=62.0
Q ss_pred cccccccCCccC-----------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh
Q 048695 540 PYSNQLVGSLHY-----------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF 601 (846)
Q Consensus 540 ~~~~~~v~~lSg-----------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~ 601 (846)
+..+++++.||+ .+|++|+|||||++||+..+..+.+.|+++ ++ |.+||+ ||+. ++.+.
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~tH~~-~~~~~ 287 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SK-HTQFIVITHNK-IVMEA 287 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TT-TSEEEEECCCT-TGGGG
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEECCH-HHHhh
Confidence 346677888987 257999999999999999999999999998 54 788888 9985 57788
Q ss_pred cCEE--EEEccCCE-EEEecCC
Q 048695 602 FDLA--LILTKEGH-QAYFGPR 620 (846)
Q Consensus 602 ~D~v--llL~~~G~-~v~~G~~ 620 (846)
||++ ++|. +|+ .+.....
T Consensus 288 ~d~~~~v~~~-~g~s~~~~~~~ 308 (322)
T 1e69_A 288 ADLLHGVTMV-NGVSAIVPVEV 308 (322)
T ss_dssp CSEEEEEEES-SSCEEEEECCC
T ss_pred CceEEEEEEe-CCEEEEEEEEc
Confidence 9987 7888 664 4455554
No 75
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=3e-19 Score=184.85 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=103.0
Q ss_pred cceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcCCc-c-------ccceEEEcC------eEEEEEeccCcCCCCCH
Q 048695 440 TPLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAERI-P-------FTGSLNGNV------LLLCYVEKLDAHQTYSV 504 (846)
Q Consensus 440 ~~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~-------~~G~I~~~G------~~igyv~Q~~~~~~~TV 504 (846)
-.-|+.+- +-+++|++++|+||||||||||+++|+|.. + ..|.+++++ +.++++.|+..+.+.|+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~ 90 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEV 90 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34555543 689999999999999999999999999953 2 233777776 24566777655444377
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHH-------H-----HH
Q 048695 505 SESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTI-------G-----TL 572 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~-------~-----~~ 572 (846)
.||+.+.. .....+....++.+.+.+. +... ...+|+++++||||++||+. . ..
T Consensus 91 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~ 156 (231)
T 4a74_A 91 LKHIYVAR------AFNSNHQMLLVQQAEDKIK------ELLN--TDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 156 (231)
T ss_dssp HHTEEEEE------CCSHHHHHHHHHHHHHHHH------HHTT--SSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred hhcEEEEe------cCChHHHHHHHHHHHHHHH------Hhcc--cCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence 77765422 1122222222333333221 0000 01689999999999999984 2 23
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhh----HHhhcCEEEEEc
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYAR----TVPFFDLALILT 609 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~----i~~~~D~vllL~ 609 (846)
++++.|++++++.|.|||+ ||..++ +...+|+++.|+
T Consensus 157 ~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 157 KHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 7888888886677999999 995554 888999999999
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=9.3e-19 Score=193.68 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=120.2
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----e--------------EEEEEeccCc-CCCC-
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----L--------------LLCYVEKLDA-HQTY- 502 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----~--------------~igyv~Q~~~-~~~~- 502 (846)
+++|+.+++|++++|+||||||||||++.|+|+++ .+|+|.++| + .++|++|++. +.|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999985 899999988 1 3899999987 8888
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------CCCc--EEEEeCCCCCCCHHH
Q 048695 503 SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPS--ILLLEEPLSGVDTIG 570 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~--iLlLDEPTsgLD~~~ 570 (846)
||+|++.++.. + +.. ..+++.+|+.+..++++++||. .+|+ +|+|| ||+|||+..
T Consensus 228 tv~e~l~~~~~-~---~~d--------~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-T---TCS--------EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-C---CCH--------HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999998642 1 110 1356778888888888888886 7899 99999 999999876
Q ss_pred HHHHHHHHHHHHhhcCcEEEE-ec---------ChhhHHhhcCEEEEEccCCEE
Q 048695 571 TLTILNILSLCQIRSGHYCLS-NT---------PYARTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 571 ~~~i~~~l~~l~~~~g~tvi~-~h---------~~~~i~~~~D~vllL~~~G~~ 614 (846)
+ ++++.++.|.|+|+ || ..+.+....+.|..+. .|+.
T Consensus 295 ~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig-~Ge~ 341 (359)
T 2og2_A 295 Q------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGEA 341 (359)
T ss_dssp H------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE-CSSS
T ss_pred H------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe-CCCC
Confidence 5 34553456899888 98 3445555667788777 6643
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.70 E-value=2.2e-20 Score=202.09 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=121.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQ 500 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~ 500 (846)
.|+++||++ .|+ +.+|++||+++++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++
T Consensus 101 ~i~~~~vs~-~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I------~~~v~q~~~lf 165 (305)
T 2v9p_A 101 FFNYQNIEL-ITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSV------LSFANHKSHFW 165 (305)
T ss_dssp HHHHTTCCH-HHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEE------ECGGGTTSGGG
T ss_pred eEEEEEEEE-EcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceE------EEEecCccccc
Confidence 478889999 674 57999999999999999999999999999999999998 7877 57889988777
Q ss_pred CCCHHH-HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------CCCcEEEEeCCCCCCCHH
Q 048695 501 TYSVSE-SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 501 ~~TV~E-~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~iLlLDEPTsgLD~~ 569 (846)
+.|++| |+.+.. ..+. .+.+.++.+ |.+..+ ...||| .+|+||| ||+||+.
T Consensus 166 ~~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQRARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 166 LASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHKAAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp GGGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSCCCCEECCCCEEE----EESSCST
T ss_pred cccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHHHHHHhCCCCEEE----ECCCCHH
Confidence 668886 776631 1111 345556654 444334 556776 8899999 9999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEecChhhHHhhcCEEEEEccCCEEEEecCCCCChHHHHHHHhhC
Q 048695 570 GTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLALILTKEGHQAYFGPRGSNHDIILDYFLLI 634 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~~~ 634 (846)
++..+.. + ||+.+. .+.+|++ +|+ +|++++.|+. +++...|...
T Consensus 228 ~~~~i~~----l----------tH~~~~-~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 228 AEDRYLY----L----------HSRVQT-FRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp TCGGGGG----G----------TTTEEE-EECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHH----H----------hCCHHH-HHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 8887752 1 577654 4789999 999 9999999987 5666677664
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=2.2e-18 Score=186.38 Aligned_cols=164 Identities=12% Similarity=0.007 Sum_probs=104.0
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc-eEEEcC---------eEEEEEeccCcCCCCCHHHHH
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG-SLNGNV---------LLLCYVEKLDAHQTYSVSESI 508 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G-~I~~~G---------~~igyv~Q~~~~~~~TV~E~l 508 (846)
..+|+++++.+++|++++|+||||||||||++.|+|... .+| .|.+.+ +++..+.|+..+ ++.+++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~---~~~~~l 98 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL---RQSDSL 98 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG---GGCHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh---hhcccc
Confidence 568999999999999999999999999999999999875 657 664432 011111111000 111222
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHcCC--Ccc-cccccCCccC--------CCCcEEEEeCCCC---C---CCH-HH
Q 048695 509 QFSAALRVGKTVNAMRRHIHVELVLNQLGL--LPY-SNQLVGSLHY--------HCPSILLLEEPLS---G---VDT-IG 570 (846)
Q Consensus 509 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L--~~~-~~~~v~~lSg--------~~P~iLlLDEPTs---g---LD~-~~ 570 (846)
.... .+.++..+.++++++..++ .+. .+..++++-. .+|++|++||||+ + +|. ..
T Consensus 99 ~~~~-------~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 99 KREI-------IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHH-------HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHH
T ss_pred ccCC-------CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 2110 1122333445555543332 222 2222333211 7999999999999 5 565 67
Q ss_pred HHHHHHHHHHHHhhcCcEEEE-ecCh--h--------------------hHHhhcCEEEEEccCCEE
Q 048695 571 TLTILNILSLCQIRSGHYCLS-NTPY--A--------------------RTVPFFDLALILTKEGHQ 614 (846)
Q Consensus 571 ~~~i~~~l~~l~~~~g~tvi~-~h~~--~--------------------~i~~~~D~vllL~~~G~~ 614 (846)
...+++.|++++++.|.|||+ +|+. + .+.+.||++++|+ +|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~-~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE-RNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE-EC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe-cCcc
Confidence 788999999996667999999 8885 4 7888999999999 6764
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.65 E-value=2.7e-19 Score=203.61 Aligned_cols=169 Identities=12% Similarity=0.006 Sum_probs=129.4
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC-----------
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------- 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------- 487 (846)
..++.+|+++ .|+. +.++|+++ +.+.+|++++|+|||||||||||++|+|+.+ +.|.|.++|
T Consensus 130 ~~l~~~~v~~-~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEH-VLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCS-BCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccce-ecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 3578899998 6641 46799999 9999999999999999999999999999985 899999988
Q ss_pred ---------eEEEEEecc-CcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----
Q 048695 488 ---------LLLCYVEKL-DAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----- 551 (846)
Q Consensus 488 ---------~~igyv~Q~-~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----- 551 (846)
+.++||+|+ +...+. ||.+|+.+.+......+ +++..+ .|. +..+|+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~~v~~~---------ld~-l~~lS~g~qrv 266 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------QHVLLI---------MDS-LTRYAMAQREI 266 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------CEEEEE---------EEC-HHHHHHHHHHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCHHHH---------HHh-HHHHHHHHHHH
Confidence 247999995 455667 99999998765431100 000000 000 112222
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---hcCc-----EEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQI---RSGH-----YCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~---~~g~-----tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+|++ |+|||+..+..+.++++++.+ +.|. ||++ +||++ ...+|++++|. +|+++..|
T Consensus 267 slAl~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~-dG~Ivl~~ 337 (438)
T 2dpy_A 267 ALAIGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAIL-DGHIVLSR 337 (438)
T ss_dssp HHHTTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHS-SEEEEECH
T ss_pred HHHhCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEe-CcEEEEeC
Confidence 55655 999999999999999999833 2374 8888 99998 67899999999 99999988
Q ss_pred CC
Q 048695 619 PR 620 (846)
Q Consensus 619 ~~ 620 (846)
++
T Consensus 338 ~~ 339 (438)
T 2dpy_A 338 RL 339 (438)
T ss_dssp HH
T ss_pred CH
Confidence 65
No 80
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=1.7e-17 Score=205.81 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=108.1
Q ss_pred eEEEEec-----eeeeeeccCCCCCcceeeceeeEEeC-------CeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC
Q 048695 420 VTFVFEG-----LTFSRYEEGSNESTPLFSYVTCYAKP-------QNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV 487 (846)
Q Consensus 420 ~~l~~~~-----l~~~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G 487 (846)
.+|+++| |++ .|. +++.+++||++.+++ |++++|+||||||||||||+| |+.+.-
T Consensus 749 ~~l~i~~~rHP~l~~-~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITK-TFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM------- 815 (1022)
T ss_dssp CCEEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------
T ss_pred ceEEEEeccccEEEE-Eec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------
Confidence 3699999 887 552 156899999999987 999999999999999999999 987511
Q ss_pred eEEE-EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--------CCCcEE
Q 048695 488 LLLC-YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--------HCPSIL 557 (846)
Q Consensus 488 ~~ig-yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--------~~P~iL 557 (846)
.++| ||||+.. . ||.|++.. +.+ ... .... + ..+..+++++ .+|+++
T Consensus 816 aqiG~~Vpq~~~---~l~v~d~I~~----rig--~~d-~~~~---------~----~stf~~em~~~a~al~la~~~sLl 872 (1022)
T 2o8b_B 816 AQMGCYVPAEVC---RLTPIDRVFT----RLG--ASD-RIMS---------G----ESTFFVELSETASILMHATAHSLV 872 (1022)
T ss_dssp HTTTCCEESSEE---EECCCSBEEE----ECC-------------------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred hheeEEeccCcC---CCCHHHHHHH----HcC--CHH-HHhh---------c----hhhhHHHHHHHHHHHHhCCCCcEE
Confidence 1244 8999752 3 55544421 110 000 0000 0 0111122222 789999
Q ss_pred EEeCCCCCCCHHHH-HHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEE--EecCC
Q 048695 558 LLEEPLSGVDTIGT-LTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQA--YFGPR 620 (846)
Q Consensus 558 lLDEPTsgLD~~~~-~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v--~~G~~ 620 (846)
||||||+|+|+... ..++++|+.++++.|.++|+ ||+.+.+...+|++.+++ |++. +.|++
T Consensus 873 LLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 873 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE--EEEEEC-----
T ss_pred EEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec--CeEEEEEecCc
Confidence 99999999999985 55789999993334899999 999999999999998865 7877 44543
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=1.4e-17 Score=181.49 Aligned_cols=166 Identities=9% Similarity=-0.035 Sum_probs=120.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeE-----------------------EeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCY-----------------------AKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~-----------------------v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++++||++ .|. ++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 43 ~i~~~~v~~-~y~-------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 43 QIDLLEVEE-VYL-------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCHHHHHH-THH-------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeehhh-hhh-------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 588899998 774 466666654 8999999999999999999999999998
Q ss_pred c-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----
Q 048695 478 P-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----- 551 (846)
Q Consensus 478 ~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----- 551 (846)
+ ..|. +.+++|+|++.+++.|++||+.+... .+.+.....+.+.+.|+.++ .+..+..+..+|+
T Consensus 115 ~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qR 184 (312)
T 3aez_A 115 ARWDHH-----PRVDLVTTDGFLYPNAELQRRNLMHR----KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDI 184 (312)
T ss_dssp HTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCTTC----TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEE
T ss_pred cccCCC-----CeEEEEecCccCCcccHHHHHHHHHh----cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhh
Confidence 4 5453 56899999988766699999864211 13334444567888999998 6666777888887
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhH-HhhcCEEEEEccCCE
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYART-VPFFDLALILTKEGH 613 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i-~~~~D~vllL~~~G~ 613 (846)
.+|+|||||||++.+|+.. ..+....+.+|.++||.+.. ....+|.+.+. +|+
T Consensus 185 v~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~r-d~~ 246 (312)
T 3aez_A 185 IPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMR-TTA 246 (312)
T ss_dssp EEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHT-TTG
T ss_pred hhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHH-hcc
Confidence 8999999999999998521 12322345666665565544 33566666555 544
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.61 E-value=7.3e-17 Score=177.31 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=92.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe----------EEEEEeccCcCCCC-CHHHHHH
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------LLCYVEKLDAHQTY-SVSESIQ 509 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------~igyv~Q~~~~~~~-TV~E~l~ 509 (846)
+++++|+.+++|++++|+|||||||||||++|+|+.+ .+|.|.++|. .+++++| .. +.+++|.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~la 234 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLK 234 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHHHH
Confidence 8999999999999999999999999999999999985 9999999982 2344432 22 3333333
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEE
Q 048695 510 FSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYC 589 (846)
Q Consensus 510 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 589 (846)
.+. + .+|++|+|||||+ .++.+.|+.+ ...+.|+
T Consensus 235 ~aL--~------------------------------------~~p~ilildE~~~-------~e~~~~l~~~-~~g~~tv 268 (330)
T 2pt7_A 235 SCL--R------------------------------------MRPDRIILGELRS-------SEAYDFYNVL-CSGHKGT 268 (330)
T ss_dssp HHT--T------------------------------------SCCSEEEECCCCS-------THHHHHHHHH-HTTCCCE
T ss_pred HHh--h------------------------------------hCCCEEEEcCCCh-------HHHHHHHHHH-hcCCCEE
Confidence 211 1 6899999999998 2467788887 5444577
Q ss_pred EE-ecChhhHHhhcCEEEEEccCCE
Q 048695 590 LS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 590 i~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
++ +|+.+ +.+.+||+++|. +|+
T Consensus 269 i~t~H~~~-~~~~~dri~~l~-~g~ 291 (330)
T 2pt7_A 269 LTTLHAGS-SEEAFIRLANMS-SSN 291 (330)
T ss_dssp EEEEECSS-HHHHHHHHHHHH-HTS
T ss_pred EEEEcccH-HHHHhhhheehh-cCC
Confidence 88 88887 788999999998 664
No 83
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.60 E-value=6.1e-17 Score=172.98 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC---------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV---------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAM 523 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G---------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~ 523 (846)
.++|+||||||||||+|+|+|+. |.+|+|.++| +.+||++|++.+.+. ||.||+.|+..... +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~------~ 77 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN------E 77 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC------T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc------H
Confidence 48999999999999999999997 4999999988 579999999998888 99999998764331 1
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCccC----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-e
Q 048695 524 RRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-N 592 (846)
Q Consensus 524 ~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~ 592 (846)
+..+.+.+.++ .+..+.++++||+ ....+++|||||.|||+.. .+.++++ ++. .+||+ .
T Consensus 78 ~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L-~~~-~~vI~Vi 147 (270)
T 3sop_A 78 NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHL-SKV-VNIIPVI 147 (270)
T ss_dssp TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHH-HTT-SEEEEEE
T ss_pred HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHH-Hhc-CcEEEEE
Confidence 11122333333 3455666677776 3566899999999999987 5666777 444 67776 5
Q ss_pred cCh
Q 048695 593 TPY 595 (846)
Q Consensus 593 h~~ 595 (846)
|..
T Consensus 148 ~K~ 150 (270)
T 3sop_A 148 AKA 150 (270)
T ss_dssp TTG
T ss_pred ecc
Confidence 544
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.60 E-value=2.2e-15 Score=184.73 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=107.2
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHH--------cCCc-cccceEEEcCeEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCL--------AERI-PFTGSLNGNVLLLC 491 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~L--------aG~~-~~~G~I~~~G~~ig 491 (846)
.+++++... ..-....+++.+++|+++.+++|++++|+||||||||||||++ .|.. |.++. .++
T Consensus 631 ~i~i~~~rH-P~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~------~~~ 703 (934)
T 3thx_A 631 RIILKASRH-ACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA------EVS 703 (934)
T ss_dssp EEEEEEECC-TTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE------EEE
T ss_pred ceEeecCcc-chhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc------cch
Confidence 577777665 2211112356899999999999999999999999999999999 4432 32211 122
Q ss_pred EEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHH
Q 048695 492 YVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIG 570 (846)
Q Consensus 492 yv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~ 570 (846)
.+ +..+.. ...+++.-... .. ..+. .++..++..+ .+|+++||||||+|||+..
T Consensus 704 ~~---d~i~~~ig~~d~l~~~lS-----tf-~~e~-~~~a~il~~a---------------~~~sLlLLDEp~~GlD~~~ 758 (934)
T 3thx_A 704 IV---DCILARVGAGDSQLKGVS-----TF-MAEM-LETASILRSA---------------TKDSLIIIDELGRGTSTYD 758 (934)
T ss_dssp CC---SEEEEECC---------C-----HH-HHHH-HHHHHHHHHC---------------CTTCEEEEESCSCSSCHHH
T ss_pred HH---HHHHHhcCchhhHHHhHh-----hh-HHHH-HHHHHHHHhc---------------cCCcEEEEeCCCCCCCHHH
Confidence 21 112222 23333321110 00 0111 1223333321 5799999999999999999
Q ss_pred HHHH-HHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 571 TLTI-LNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 571 ~~~i-~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
...+ ..+++.++++.|.++|+ ||+. ++.+++|++..++ +|++...++.+
T Consensus 759 ~~~i~~~il~~l~~~~g~~vl~aTH~~-el~~lad~~~~v~-ng~v~~~~~~~ 809 (934)
T 3thx_A 759 GFGLAWAISEYIATKIGAFCMFATHFH-ELTALANQIPTVN-NLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESCG-GGGGGGGTCTTEE-EEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCcH-HHHHHhcccceeE-eeEEEEEecCC
Confidence 9888 67788883345899999 9995 5668999999999 99998877654
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=1.5e-16 Score=164.47 Aligned_cols=142 Identities=8% Similarity=-0.104 Sum_probs=96.3
Q ss_pred Ccceeeceee-EEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhh
Q 048695 439 STPLFSYVTC-YAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 439 ~~~iL~~vs~-~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr 515 (846)
+.+.|+++.+ .+++|++++|+||||||||||++.|++... .+|.+.+.+ .+. +. .+.+.+. .+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~-------~~~---~~~~~~~~~~---~~~ 74 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT-------TEE---SRDSIIRQAK---QFN 74 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE-------SSS---CHHHHHHHHH---HTT
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE-------ccc---CHHHHHHHHH---Hhc
Confidence 4567899985 899999999999999999999999998764 666665532 111 00 1111111 000
Q ss_pred cC-------------------------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCc--EEEEeCCCCCC--
Q 048695 516 VG-------------------------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPS--ILLLEEPLSGV-- 566 (846)
Q Consensus 516 ~~-------------------------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~--iLlLDEPTsgL-- 566 (846)
.. ...+..+..+.+.+.++. .+|+ ++++||||+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 75 WDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQK----------------LGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp CCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHH----------------HCSSCEEEEEETGGGGSSS
T ss_pred chHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHh----------------hCCCceEEEEECchHhhcC
Confidence 00 000111111111111111 5799 99999999888
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEE-ecCh--------hhHHhhcCEEEEEc
Q 048695 567 DTIGTLTILNILSLCQIRSGHYCLS-NTPY--------ARTVPFFDLALILT 609 (846)
Q Consensus 567 D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~--------~~i~~~~D~vllL~ 609 (846)
|+..+.++++.|++++++.|.|||+ +|+. ..+.+.||++++|+
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEE
Confidence 9999999999999996677999999 9998 55889999999998
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=8e-16 Score=161.86 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=93.1
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEc--CeEEEEEeccCcCCCC-CHHHHHHHHHhhh
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGN--VLLLCYVEKLDAHQTY-SVSESIQFSAALR 515 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~--G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr 515 (846)
++.+|+|||+++++|+++||.||||||||||+++|+|++ |.+.++ .+.++|++|++ +++. |+.|++.+.....
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~ 86 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQY 86 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhcccccCCceEEEeCCc-CccccCHhHhhhhhccCC
Confidence 678999999999999999999999999999999999975 443333 26789999995 6667 9999998754322
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 048695 516 VGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQI 583 (846)
Q Consensus 516 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~ 583 (846)
. ...+.....+.+.+.|+.+ .+..+..+..+|+ .+|+++++|||...+|.. ++++
T Consensus 87 ~-~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~--------l~~~-- 153 (245)
T 2jeo_A 87 N-FDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE--------IRDM-- 153 (245)
T ss_dssp C-TTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH--------HHTT--
T ss_pred C-CCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH--------HHHh--
Confidence 1 1111111223445555543 3445566666665 579999999999888863 2232
Q ss_pred hcCcEEEE-ecChhhHH-hhcCEEEEEccCCE
Q 048695 584 RSGHYCLS-NTPYARTV-PFFDLALILTKEGH 613 (846)
Q Consensus 584 ~~g~tvi~-~h~~~~i~-~~~D~vllL~~~G~ 613 (846)
.+.+|++ +|+...+. .+++++ + +|+
T Consensus 154 -~~~~i~v~th~~~~~~r~~~r~~---~-~G~ 180 (245)
T 2jeo_A 154 -FHLRLFVDTDSDVRLSRRVLRDV---R-RGR 180 (245)
T ss_dssp -CSEEEEEECCHHHHHHHHHHHHT---C----
T ss_pred -cCeEEEEECCHHHHHHHHHHHHH---H-cCC
Confidence 3788988 88744443 344444 5 664
No 87
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=1.5e-16 Score=188.50 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=104.9
Q ss_pred eEEEEeceeeeeeccCCCCCcceeecee----------eEEeCCeEEEEEcCCCCChhhHHHHHcCCc-c-ccceEEEcC
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVT----------CYAKPQNMFALLGGSRTSKVTLLQCLAERI-P-FTGSLNGNV 487 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs----------~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~-~~G~I~~~G 487 (846)
..++++||+. .|+.. .+++|+.++ +.++. +||+|||||||||||++|+|+. | .+|.|.++|
T Consensus 9 ~~i~~~~l~~-~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g 81 (608)
T 3szr_A 9 GSVAENNLCS-QYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP 81 (608)
T ss_dssp ------------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred chhhhhhhhH-HHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence 3578889988 66521 234555443 55554 9999999999999999999997 6 799999888
Q ss_pred ---------------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC
Q 048695 488 ---------------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY 551 (846)
Q Consensus 488 ---------------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg 551 (846)
+.+||++|+..+++. ||+|++.+......... -++.. +...-..++
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s~--~~i~l~i~~ 143 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGISH--ELITLEISS 143 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCCS--CCEEEEEEE
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccch--HHHHHHhcC
Confidence 468999999999998 99999988654321100 01111 000001122
Q ss_pred -CCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHhhc-CcEEEE-ecChhhH----Hhh--------cCEEEEEcc
Q 048695 552 -HCPSILLLEEP------LSGVDTIGTLTILNILSLCQIRS-GHYCLS-NTPYART----VPF--------FDLALILTK 610 (846)
Q Consensus 552 -~~P~iLlLDEP------TsgLD~~~~~~i~~~l~~l~~~~-g~tvi~-~h~~~~i----~~~--------~D~vllL~~ 610 (846)
.+|+++++||| |+|||+..+.++.++++++.++. +.++++ +|+.+.+ .++ ...|.++.
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT- 222 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT- 222 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE-
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec-
Confidence 78999999999 99999999999999999973333 445555 9887622 222 24577887
Q ss_pred CCEEEEecCC
Q 048695 611 EGHQAYFGPR 620 (846)
Q Consensus 611 ~G~~v~~G~~ 620 (846)
++..+..|+.
T Consensus 223 K~Dlv~~g~~ 232 (608)
T 3szr_A 223 KPDLVDKGTE 232 (608)
T ss_dssp CGGGSSSSST
T ss_pred chhhcCcccH
Confidence 6666655554
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.57 E-value=2.7e-16 Score=167.17 Aligned_cols=131 Identities=15% Similarity=0.110 Sum_probs=95.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-cceEEEcCeEEEEEeccCcC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-TGSLNGNVLLLCYVEKLDAH 499 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-~G~I~~~G~~igyv~Q~~~~ 499 (846)
++++||++ ..+|+++| +++|++++|+|||||||||||++|+|+++ . +|+|.++|..++|++|+..-
T Consensus 6 ~~l~~l~~----------~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGL----------PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS 73 (261)
T ss_dssp CCGGGSSC----------CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred CChHHCCC----------HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce
Confidence 45666765 15899999 99999999999999999999999999985 5 89999998666666554211
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------CCCcEEEEeCCCCCCCHHHHH
Q 048695 500 QTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------HCPSILLLEEPLSGVDTIGTL 572 (846)
Q Consensus 500 ~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------~~P~iLlLDEPTsgLD~~~~~ 572 (846)
+ + .+ +.+|++. ..++. .+|++|++|||| |+.+..
T Consensus 74 ~---v----------~q-----------------~~~gl~~------~~l~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 74 I---V----------NQ-----------------REVGEDT------KSFADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp E---E----------EE-----------------EEBTTTB------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred e---e----------eH-----------------HHhCCCH------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 0 00 0111111 01111 689999999999 988865
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+ ++. ++.|.+|++ +|+.+ +...+||++.|.
T Consensus 115 ~~---l~~--~~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 115 TA---LRA--AETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HH---HHH--HHTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HH---HHH--HccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 44 443 356999999 99976 678899999887
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=3.7e-17 Score=180.63 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=114.5
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
.++.+++++ .|+. +.++|+++ +.+.+||+++|+||||||||||+++|+|..+ +.|.|.+.|.
T Consensus 45 ~i~~~~l~~-~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~ 118 (347)
T 2obl_A 45 PLLRQVIDQ-PFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL 118 (347)
T ss_dssp STTCCCCCS-EECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT
T ss_pred Ceeecccce-ecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh
Confidence 578889998 6751 46799999 9999999999999999999999999999974 8899988771
Q ss_pred --------EEEEEeccCcCC-CC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc--cccCCccC-----
Q 048695 489 --------LLCYVEKLDAHQ-TY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSN--QLVGSLHY----- 551 (846)
Q Consensus 489 --------~igyv~Q~~~~~-~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~--~~v~~lSg----- 551 (846)
.++++.|.+.-. .. ++.++....+.. ....+ .+... ..+..+|+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~------------------~~~~~-~~vl~~ld~~~~lS~g~r~v 179 (347)
T 2obl_A 119 LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEY------------------FRDQG-KNVLLMMDSVTRYARAARDV 179 (347)
T ss_dssp SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHH------------------HHTTT-CEEEEEEETHHHHHHHHHHH
T ss_pred hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHH------------------HHhcc-ccHHHHHhhHHHHHHHHHHH
Confidence 245555543210 00 111111111110 00000 00000 12223333
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-hcCc-----EEEE-ecChhhHHhhcCEEEEEccCCEEEEecCC
Q 048695 552 ----HCPSILLLEEPLSGVDTIGTLTILNILSLCQI-RSGH-----YCLS-NTPYARTVPFFDLALILTKEGHQAYFGPR 620 (846)
Q Consensus 552 ----~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~~g~-----tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~ 620 (846)
.+|++ |+|||+.....+.++++++.+ +.|. ||++ +||++ ..+||++..+. +|+++..|++
T Consensus 180 ~lal~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 180 GLASGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp HHHTTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHC-SEEEEBCHHH
T ss_pred HHHcCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEee-CcEEEEeCCH
Confidence 44544 899999999999999999833 4577 8888 99998 57899999999 9999998865
No 90
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.57 E-value=1.6e-18 Score=179.37 Aligned_cols=153 Identities=12% Similarity=-0.045 Sum_probs=89.7
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC-------------eEEEEEeccCcCCCC-C-H
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV-------------LLLCYVEKLDAHQTY-S-V 504 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G-------------~~igyv~Q~~~~~~~-T-V 504 (846)
..-|+|||+++++|++++|+||||||||||+++|+|+.| |+|.+ | +.++|++|++..++. + +
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 457999999999999999999999999999999999886 99988 5 247888887654432 2 1
Q ss_pred HHHHH---HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------------------CCCcEEEEeCCC
Q 048695 505 SESIQ---FSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------------------HCPSILLLEEPL 563 (846)
Q Consensus 505 ~E~l~---f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------------------~~P~iLlLDEPT 563 (846)
.+++. +....+ +.++ +.++++++..++. ..+ .++|| .+|++++|||||
T Consensus 87 ~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 87 EDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp TCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred cchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 11111 101111 1121 2466666654431 111 12222 468888899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh------cCcEEEE-ecChhhHHhhcCEEE
Q 048695 564 SGVDTIGTLTILNILSLCQIR------SGHYCLS-NTPYARTVPFFDLAL 606 (846)
Q Consensus 564 sgLD~~~~~~i~~~l~~l~~~------~g~tvi~-~h~~~~i~~~~D~vl 606 (846)
+++|..+...|.+.|++..++ .+...|+ +|+.+++....|+++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 999999999999988876322 2333444 556666655555443
No 91
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=1.1e-15 Score=185.41 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=109.1
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC-eEEEEEeccC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+.+++... -.-....+++.+++|+++. ++|++++|+||||||||||||+|+|... ..|...-.. ..++++.|
T Consensus 577 ~i~i~~~rH-P~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRH-PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECC-TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE--
T ss_pred CEEEEeccc-cEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH--
Confidence 466666654 1100000256899999999 9999999999999999999999999752 444211111 45677666
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH-H
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI-L 575 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i-~ 575 (846)
+++. ++.|++..+... . ..+. .++..+++. -.+|+++|||||++|+|+.....+ .
T Consensus 653 -i~~~~~~~d~l~~~~st-----f-~~e~-~~~~~il~~---------------a~~psLlLLDEp~~Gtd~~d~~~i~~ 709 (800)
T 1wb9_A 653 -IFTRVGAADDLASGRST-----F-MVEM-TETANILHN---------------ATEYSLVLMDEIGRGTSTYDGLSLAW 709 (800)
T ss_dssp -EEEEEC----------------C-HHHH-HHHHHHHHH---------------CCTTEEEEEESCCCCSSSSHHHHHHH
T ss_pred -HHhhCCHHHHHHhhhhh-----h-hHHH-HHHHHHHHh---------------ccCCCEEEEECCCCCCChhHHHHHHH
Confidence 5666 889988764321 1 1122 233344442 168999999999999999887775 7
Q ss_pred HHHHHHHhh-cCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEec
Q 048695 576 NILSLCQIR-SGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 576 ~~l~~l~~~-~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.+++.+ ++ .|.++|+ ||+.+. .+++|++..++ +|++....
T Consensus 710 ~ll~~l-~~~~g~~vl~~TH~~el-~~l~d~~~~v~-n~~~~~~~ 751 (800)
T 1wb9_A 710 ACAENL-ANKIKALTLFATHYFEL-TQLPEKMEGVA-NVHLDALE 751 (800)
T ss_dssp HHHHHH-HHTTCCEEEEECSCGGG-GGHHHHSTTEE-EEEEEEEE
T ss_pred HHHHHH-HhccCCeEEEEeCCHHH-HHHhhhhhceE-EEEEEEEE
Confidence 888998 55 5899999 999865 46888876666 67765543
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.56 E-value=4.7e-16 Score=155.85 Aligned_cols=128 Identities=10% Similarity=0.037 Sum_probs=85.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc--ccceEE--E----cCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP--FTGSLN--G----NVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH 526 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~--~----~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~ 526 (846)
.++|+||||||||||+++|+|+++ ..|... . .++.+||++|+. ++.+++ + +.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~-~~~~~~~-------- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-F-SSKFFTS-------- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEE-E-EETTCCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-H-HhhcCCc--------
Confidence 589999999999999999999874 344221 1 125789999975 122222 0 1110000
Q ss_pred HHHHHHHHHcCCCcccccccCCccC------------------CCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhhcC
Q 048695 527 IHVELVLNQLGLLPYSNQLVGSLHY------------------HCPSILLLEE--PLSGVDTIGTLTILNILSLCQIRSG 586 (846)
Q Consensus 527 ~~v~~~l~~l~L~~~~~~~v~~lSg------------------~~P~iLlLDE--PTsgLD~~~~~~i~~~l~~l~~~~g 586 (846)
++..++++.++|+ .+|++|+||| ||++||+..+..+.+.+++ .+
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~ 130 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PN 130 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TT
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CC
Confidence 0223334444443 4899999999 9999999999998888765 46
Q ss_pred cEEEE--e--cChhhHHhhcCEEEEEccCCEEEEec
Q 048695 587 HYCLS--N--TPYARTVPFFDLALILTKEGHQAYFG 618 (846)
Q Consensus 587 ~tvi~--~--h~~~~i~~~~D~vllL~~~G~~v~~G 618 (846)
.|+|+ | |+.+.+..++|| . +|+++...
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~-~~~i~~~~ 161 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----P-GAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----T-TCEEEECC
T ss_pred CeEEEEEccCCCchHHHHHHhc----C-CcEEEEec
Confidence 66666 4 799999999998 3 77877643
No 93
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.54 E-value=6e-14 Score=154.76 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred cccccCCccC-------------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh
Q 048695 542 SNQLVGSLHY-------------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF 601 (846)
Q Consensus 542 ~~~~v~~lSg-------------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~ 601 (846)
.++++++||+ .+|++|||||||+|||+..+..+++.|+++ .+.|.+||+ ||+. ++.+.
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~~vi~~sH~~-~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQVILVSHDE-ELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT-GGGSSEEEEEESCG-GGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEEChH-HHHHh
Confidence 4567788887 489999999999999999999999999999 667889999 9995 57889
Q ss_pred cCEEEEEc
Q 048695 602 FDLALILT 609 (846)
Q Consensus 602 ~D~vllL~ 609 (846)
||+++.|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999996
No 94
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.54 E-value=1.8e-16 Score=175.63 Aligned_cols=163 Identities=16% Similarity=0.094 Sum_probs=104.5
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--c-cc----ce-EEEcC------eEEEEEeccCcCCCCCH
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQCLAERI--P-FT----GS-LNGNV------LLLCYVEKLDAHQTYSV 504 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~-~~----G~-I~~~G------~~igyv~Q~~~~~~~TV 504 (846)
-..|+++ ++.+++|++++|+||||||||||++.|++.. + .+ |+ |++++ +++++++|...+.+.++
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v 196 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEV 196 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4457776 6899999999999999999999999999986 3 44 67 88888 35677777765443377
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC--CCCcEEEEeCCCCCCCHHH------------
Q 048695 505 SESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY--HCPSILLLEEPLSGVDTIG------------ 570 (846)
Q Consensus 505 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--~~P~iLlLDEPTsgLD~~~------------ 570 (846)
.||+.+.. ........ +.++. +...+.++|+ .+|++|++||||++||+..
T Consensus 197 ~~ni~~~~------~~~~~~~~----~~l~~------~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~ 260 (349)
T 1pzn_A 197 LKHIYVAR------AFNSNHQM----LLVQQ------AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 260 (349)
T ss_dssp GGGEEEEE------CCSHHHHH----HHHHH------HHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHH
T ss_pred hhCEEEEe------cCChHHHH----HHHHH------HHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHH
Confidence 77765431 11122211 22221 2333444555 7899999999999999852
Q ss_pred HHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecC
Q 048695 571 TLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 571 ~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
..++++.|++++++.|.|||+ +|........++...... +|+++.++.
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccC-CcceEeecC
Confidence 466777788886667999999 898876655556666666 676655543
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=3.3e-15 Score=174.48 Aligned_cols=141 Identities=12% Similarity=0.049 Sum_probs=110.8
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHH
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRH 526 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~ 526 (846)
++.+++|++++|+||||||||||++.++|..+.+|+ +.+.+++|+.. .++.++.. +. +.+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~-----~vi~~~~ee~~---~~l~~~~~-----~~--g~~~---- 335 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-----RAILFAYEESR---AQLLRNAY-----SW--GMDF---- 335 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-----CEEEEESSSCH---HHHHHHHH-----TT--SCCH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC-----CEEEEEEeCCH---HHHHHHHH-----Hc--CCCH----
Confidence 569999999999999999999999999998754453 23456677631 13333321 11 2221
Q ss_pred HHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhhcCcE
Q 048695 527 IHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTI-----GTLTILNILSLCQIRSGHY 588 (846)
Q Consensus 527 ~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~-----~~~~i~~~l~~l~~~~g~t 588 (846)
++ +...|+.+..+..+.++|+ .+|++|++| ||+|||.. .+..+.++++.+ ++.|.|
T Consensus 336 ---~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l-~~~g~t 409 (525)
T 1tf7_A 336 ---EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA-KQEEIT 409 (525)
T ss_dssp ---HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH-HHTTCE
T ss_pred ---HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH-HhCCCE
Confidence 12 3356777888888888987 899999999 99999999 999999999999 788999
Q ss_pred EEE-ecCh----------hhHHhhcCEEEEEccCCE
Q 048695 589 CLS-NTPY----------ARTVPFFDLALILTKEGH 613 (846)
Q Consensus 589 vi~-~h~~----------~~i~~~~D~vllL~~~G~ 613 (846)
||+ +|+. ..+..++|++++|+ +|+
T Consensus 410 vilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~-~ge 444 (525)
T 1tf7_A 410 GLFTNTSDQFMGAHSITDSHISTITDTIILLQ-YVE 444 (525)
T ss_dssp EEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE-EEE
T ss_pred EEEEECcccccCcccccCcccceeeeEEEEEE-EEE
Confidence 999 8988 77888999999999 776
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.50 E-value=5.6e-16 Score=158.68 Aligned_cols=130 Identities=14% Similarity=0.014 Sum_probs=96.2
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCC--CC-CHHHHHHHHHhhhcCCCCCHHHHH
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQ--TY-SVSESIQFSAALRVGKTVNAMRRH 526 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~--~~-TV~E~l~f~a~lr~~~~~~~~~~~ 526 (846)
.++|++++|+||||||||||+++|+|+++. .++|++|++.++ .. |+++++.+.. ..+.....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 67 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNY------DHPDAFDL 67 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCT------TSGGGBCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCC------CChhhhhH
Confidence 478999999999999999999999997631 378999998776 45 8988865531 11222234
Q ss_pred HHHHHHHHHcCCCcccccccCCccC-----------------CCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHH
Q 048695 527 IHVELVLNQLGLLPYSNQLVGSLHY-----------------HCPSILLLEEPLSG-------VDTIGTLTILNILSLCQ 582 (846)
Q Consensus 527 ~~v~~~l~~l~L~~~~~~~v~~lSg-----------------~~P~iLlLDEPTsg-------LD~~~~~~i~~~l~~l~ 582 (846)
+++.+.++.+++.+..+.++.++|+ .+|.++++||||++ ||+.....+.+.+++..
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~ 147 (211)
T 3asz_A 68 ALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDV 147 (211)
T ss_dssp HHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHH
Confidence 5677888888887766655544443 55666667999999 99999999999998764
Q ss_pred hhcCcEEEE-ecC
Q 048695 583 IRSGHYCLS-NTP 594 (846)
Q Consensus 583 ~~~g~tvi~-~h~ 594 (846)
++.|+|++. +|+
T Consensus 148 ~~~g~t~~~~~~~ 160 (211)
T 3asz_A 148 LERGRSLEGVVAQ 160 (211)
T ss_dssp HHSCCCHHHHHHH
T ss_pred HHhCCCHHHHHHH
Confidence 567888877 554
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.50 E-value=1.2e-14 Score=177.93 Aligned_cols=158 Identities=12% Similarity=0.039 Sum_probs=96.4
Q ss_pred EEEEeceeeeeecc--CCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC-eEEEEEec
Q 048695 421 TFVFEGLTFSRYEE--GSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV-LLLCYVEK 495 (846)
Q Consensus 421 ~l~~~~l~~~~~~~--~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G-~~igyv~Q 495 (846)
.+.+++... -.-. ...+++.+++|||+.+++|++++|+||||||||||||++++..- ..|...-.. ..++.+
T Consensus 640 ~i~i~~~rH-P~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~-- 716 (918)
T 3thx_B 640 KIVIKNGRH-PVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV-- 716 (918)
T ss_dssp EEEEEEECC-HHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC--
T ss_pred cEEEEeccc-hhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH--
Confidence 466666554 1100 01125789999999999999999999999999999999986531 222110000 122322
Q ss_pred cCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHH
Q 048695 496 LDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTI 574 (846)
Q Consensus 496 ~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i 574 (846)
+.++.. .+.|++..+.. .. ..+. .+...++... .+|+++||||||+|||+.....+
T Consensus 717 -d~i~~~ig~~d~l~~~~s-----tf-s~em-~~~~~il~~a---------------~~p~LlLLDEP~~GlD~~~~~~i 773 (918)
T 3thx_B 717 -DGIFTRMGAADNIYKGRS-----TF-MEEL-TDTAEIIRKA---------------TSQSLVILDELGRGTSTHDGIAI 773 (918)
T ss_dssp -SEEEEEC----------C-----CH-HHHH-HHHHHHHHHC---------------CTTCEEEEESTTTTSCHHHHHHH
T ss_pred -HHHHHhCChHHHHHHhHH-----Hh-hHHH-HHHHHHHHhc---------------cCCCEEEEeCCCCCCCHHHHHHH
Confidence 223444 56666543321 11 1111 1223333321 67999999999999999999998
Q ss_pred H-HHHHHHHhhcCcEEEE-ecChhhHHhhcCEE
Q 048695 575 L-NILSLCQIRSGHYCLS-NTPYARTVPFFDLA 605 (846)
Q Consensus 575 ~-~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~v 605 (846)
. .+++.++++.|.++|+ ||+.+. .+++|+.
T Consensus 774 ~~~il~~L~~~~g~tvl~vTH~~el-~~l~~~~ 805 (918)
T 3thx_B 774 AYATLEYFIRDVKSLTLFVTHYPPV-CELEKNY 805 (918)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGG-GGHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHHH-HHHHhhc
Confidence 7 7888884456999999 999754 4667654
No 98
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.49 E-value=5.7e-14 Score=155.59 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCEEEEecCCCC
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGHQAYFGPRGS 622 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~~v~~G~~~~ 622 (846)
.+|+||||||||++||+..+..+++.|+++ . +|+|+ ||+ ++ .+|++++|+ +|+++..|++++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-~---qt~i~~th~-~~---~~~~i~~l~-~G~i~~~g~~~~ 353 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASV-P---QAIVTGTEL-AP---GAALTLRAQ-AGRFTPVADEEM 353 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHS-S---EEEEEESSC-CT---TCSEEEEEE-TTEEEECCCTTT
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhc-C---cEEEEEEec-cc---cCCEEEEEE-CCEEEecCCHHH
Confidence 489999999999999999999999999887 3 68888 885 43 899999999 999999998853
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=1.5e-14 Score=174.39 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=96.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEEcC-eEEEEEeccC
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNGNV-LLLCYVEKLD 497 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~~G-~~igyv~Q~~ 497 (846)
.+++++... -.-. . +++.+++|+|+. |++++|+||||||||||||+|+|+. +..|.+.-.. ..+|+++|
T Consensus 550 ~i~i~~~rH-P~le-~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 550 RLQIRAGRH-PVVE-R-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SEEEEEECC-TTGG-G-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred cEEEEEeEC-ceEc-c-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 466776654 2110 0 357899999999 9999999999999999999999985 3777654322 56888877
Q ss_pred cCCCC-CHHHHHHHHHhhhcCCCCCHHH-HHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC---CCCCCHHHH-
Q 048695 498 AHQTY-SVSESIQFSAALRVGKTVNAMR-RHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP---LSGVDTIGT- 571 (846)
Q Consensus 498 ~~~~~-TV~E~l~f~a~lr~~~~~~~~~-~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP---TsgLD~~~~- 571 (846)
+++. ++.|++..+. +.-. ....+..+++. -.+|+++||||| |++||..+.
T Consensus 622 -i~~~~~~~d~l~~g~--------S~~~~e~~~la~il~~---------------a~~p~LlLLDEpgrGTs~lD~~~~~ 677 (765)
T 1ewq_A 622 -IYTRIGASDDLAGGK--------STFMVEMEEVALILKE---------------ATENSLVLLDEVGRGTSSLDGVAIA 677 (765)
T ss_dssp -EEEECCC------CC--------SHHHHHHHHHHHHHHH---------------CCTTEEEEEESTTTTSCHHHHHHHH
T ss_pred -hhccCCHHHHHHhcc--------cHHHHHHHHHHHHHHh---------------ccCCCEEEEECCCCCCCCcCHHHHH
Confidence 5566 9999987532 1111 11122222321 178999999999 999998875
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChhhHHhhc
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYARTVPFF 602 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~ 602 (846)
..+++.|++ .|.++|+ ||+.+.+ +++
T Consensus 678 ~~i~~~L~~----~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 678 TAVAEALHE----RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp HHHHHHHHH----HTCEEEEECCCHHHH-TCC
T ss_pred HHHHHHHHh----CCCEEEEEeCCHHHH-Hhh
Confidence 567777755 5789999 9997654 444
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=5.7e-15 Score=160.29 Aligned_cols=144 Identities=9% Similarity=0.039 Sum_probs=72.7
Q ss_pred eceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC-c-cccceEEEcC---------eEEEEE
Q 048695 425 EGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER-I-PFTGSLNGNV---------LLLCYV 493 (846)
Q Consensus 425 ~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~-~-~~~G~I~~~G---------~~igyv 493 (846)
+||++ .|+ ++.+++++++.+ +|+||||||||||++.|+|. . +.+| |.++| +.++++
T Consensus 2 ~~l~~-~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPN-QVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEE
T ss_pred CCCcc-eEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEE
Confidence 36777 565 578999999998 99999999999999999997 4 5778 66655 457899
Q ss_pred eccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------CCCc---EEEEeCCC
Q 048695 494 EKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------HCPS---ILLLEEPL 563 (846)
Q Consensus 494 ~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------~~P~---iLlLDEPT 563 (846)
+|++..... ||.|+..++..... .+..+..++.+ .+..++++.++|+ ..++ +|++||||
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt 137 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137 (301)
T ss_dssp EC---CCEEEEEEEEC----------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred ecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence 998777667 88888877543210 00001111211 1223445555554 3444 89999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 564 S-GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 564 s-gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
+ |||+... +.++++..+.+.++|+ +||+.
T Consensus 138 ~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 8 4999873 6677773334777777 89874
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.45 E-value=3.6e-14 Score=152.09 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=97.0
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEc-----CeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHH
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGN-----VLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAM 523 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~-----G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~ 523 (846)
.+++|++++|+||||||||||++.|++... .|++..+ +..+.|+..++... .+.+.+. .+. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~--~~~~r~~---~~g--~~~~~- 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPT--AIHHRLH---ALG--AHLSA- 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHH--HHHHHHH---HHH--TTSCH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHH--HHHHHHH---HHH--hhcCh-
Confidence 589999999999999999999999998543 4544221 13467776654210 1222221 111 11221
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCccC----------CCCcEEEEeCCCC--CCCHHH---HHHHHHHHHHHHhhcCcE
Q 048695 524 RRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPSILLLEEPLS--GVDTIG---TLTILNILSLCQIRSGHY 588 (846)
Q Consensus 524 ~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~iLlLDEPTs--gLD~~~---~~~i~~~l~~l~~~~g~t 588 (846)
...+++++.+++.+..++.+..+|+ .+|+++++||||+ ++|... ..++++.|++++++.|+|
T Consensus 97 ---~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 ---EERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp ---HHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred ---hhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 2356788999998888888888886 7899999999999 999854 488899999996677999
Q ss_pred EEE-ecChhhH
Q 048695 589 CLS-NTPYART 598 (846)
Q Consensus 589 vi~-~h~~~~i 598 (846)
||+ ||+....
T Consensus 174 vi~i~H~~~~~ 184 (279)
T 1nlf_A 174 IVFLHHASKGA 184 (279)
T ss_dssp EEEEEEC----
T ss_pred EEEEecCCCcc
Confidence 999 9988655
No 102
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.42 E-value=1.8e-13 Score=167.10 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=114.9
Q ss_pred hhhHHHHHcCCc-cccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCC-C-H---HHHHHHHHHHHHHcCC
Q 048695 466 KVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTV-N-A---MRRHIHVELVLNQLGL 538 (846)
Q Consensus 466 KSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~-~-~---~~~~~~v~~~l~~l~L 538 (846)
++|...|..+++ |..|+|+++|+.+. .+.. ||.|++.|...+..+... . . .+..++..+.|+.+||
T Consensus 381 ~~~C~~C~g~rl~~~~~~V~i~G~~i~-------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL 453 (916)
T 3pih_A 381 QRTCSVCGGRRLNREALSVKINGLNIH-------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGL 453 (916)
T ss_dssp EEECTTTCSCCBCTTGGGEEETTEEHH-------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTC
T ss_pred cccchhcccccCChHhcCcEECCccHH-------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 467777888887 49999999996652 1333 899999886544322110 0 0 0112344567888999
Q ss_pred Ccc-cccccCCccC-------------CCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh
Q 048695 539 LPY-SNQLVGSLHY-------------HCPS--ILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF 601 (846)
Q Consensus 539 ~~~-~~~~v~~lSg-------------~~P~--iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~ 601 (846)
.+. .++.+++||| .+|+ +|+|||||+|||+.....++++|+++ ++.|.|||+ +||++.+..
T Consensus 454 ~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L-~~~G~TvivVtHd~~~~~~- 531 (916)
T 3pih_A 454 EYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL-RDLGNTVIVVEHDEEVIRN- 531 (916)
T ss_dssp TTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT-TTTTCEEEEECCCHHHHHT-
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHh-
Confidence 875 6999999998 5555 99999999999999999999999999 778999999 999987755
Q ss_pred cCEEEEE------ccCCEEEEecCCCC
Q 048695 602 FDLALIL------TKEGHQAYFGPRGS 622 (846)
Q Consensus 602 ~D~vllL------~~~G~~v~~G~~~~ 622 (846)
+|++++| + +|++++.|++++
T Consensus 532 aD~ii~lgpgag~~-~G~iv~~G~~~e 557 (916)
T 3pih_A 532 ADHIIDIGPGGGTN-GGRVVFQGTVDE 557 (916)
T ss_dssp CSEEEEEESSSGGG-CSEEEEEECHHH
T ss_pred CCEEEEEcCCcccC-CCEEEEeechhh
Confidence 9999999 7 999999999854
No 103
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.42 E-value=5e-15 Score=153.29 Aligned_cols=124 Identities=14% Similarity=0.048 Sum_probs=91.2
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcC--------eEEEEEeccCcCCCC-CH----HHHHHHH
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNV--------LLLCYVEKLDAHQTY-SV----SESIQFS 511 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G--------~~igyv~Q~~~~~~~-TV----~E~l~f~ 511 (846)
-..++|++++|+||||||||||+++|+|+.+ .+|+|.+++ +.++|++|++..++. ++ .|++.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 4578999999999999999999999999875 689999887 358899998776666 66 5655443
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
...+ +.++ +.++++++ +++++||| ||+.++.++.+.+. .+.+|++
T Consensus 91 ~~~y---g~~~----~~v~~~l~------------------~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i 135 (219)
T 1s96_A 91 GNYY---GTSR----EAIEQVLA------------------TGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFI 135 (219)
T ss_dssp TEEE---EEEH----HHHHHHHT------------------TTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEE
T ss_pred hccC---CCCH----HHHHHHHh------------------cCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEE
Confidence 2222 2222 23555543 36899999 99999999998765 4889999
Q ss_pred -ecChhhHHhhcCEEEEEccCC
Q 048695 592 -NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 592 -~h~~~~i~~~~D~vllL~~~G 612 (846)
+|+.+++.+ |+ ++ .|
T Consensus 136 ~th~~~~l~~---Rl--~~-rG 151 (219)
T 1s96_A 136 LPPSKIELDR---RL--RG-RG 151 (219)
T ss_dssp ECSSHHHHHH---HH--HT-TS
T ss_pred ECCCHHHHHH---HH--HH-cC
Confidence 999988766 43 56 66
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.40 E-value=9.1e-14 Score=153.94 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=82.3
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-cceEEEcC--------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-TGSLNGNV--------LLLCYVEKLDAHQTY-SVSESIQFSAALRVG 517 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-~G~I~~~G--------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~ 517 (846)
..++|++++|+|||||||||||++|+|.++ . +|.|...+ ...+++.|....... |..+.|.- .++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~--aL~-- 194 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRS--ALR-- 194 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHH--HTT--
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHH--Hhh--
Confidence 678999999999999999999999999985 4 57765433 233455665433333 44442221 011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 518 KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 518 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
.+|++|++|||| |..+ ++.+.+. ++.|.+|++ +|+.+
T Consensus 195 ----------------------------------~~PdvillDEp~---d~e~----~~~~~~~-~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 195 ----------------------------------EDPDIILVGEMR---DLET----IRLALTA-AETGHLVFGTLHTTS 232 (356)
T ss_dssp ----------------------------------SCCSEEEESCCC---SHHH----HHHHHHH-HHTTCEEEEEESCSS
T ss_pred ----------------------------------hCcCEEecCCCC---CHHH----HHHHHHH-HhcCCEEEEEEccCh
Confidence 789999999999 6554 4444555 567999999 99988
Q ss_pred hHHhhcCEEEEEc
Q 048695 597 RTVPFFDLALILT 609 (846)
Q Consensus 597 ~i~~~~D~vllL~ 609 (846)
.+ +.+||++.|.
T Consensus 233 ~~-~~~dRli~l~ 244 (356)
T 3jvv_A 233 AA-KTIDRVVDVF 244 (356)
T ss_dssp HH-HHHHHHHHTS
T ss_pred HH-HHHHHHhhhc
Confidence 77 8899999886
No 105
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.40 E-value=6.9e-14 Score=155.57 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=94.8
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------eEEEEEe-ccCcC--CCC-CHHH
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------LLLCYVE-KLDAH--QTY-SVSE 506 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------~~igyv~-Q~~~~--~~~-TV~E 506 (846)
+++++|+.+++|++++|+||||||||||+++|+|+.+ .+|.|.++| +.++|++ |++.+ ++. |+++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~ 243 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAAT 243 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHH
Confidence 3499999999999999999999999999999999986 899999998 4689999 77654 356 9999
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 048695 507 SIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSG 586 (846)
Q Consensus 507 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g 586 (846)
++..+. + .+|+.+++||++. .++.+.|+.+ ....
T Consensus 244 ~i~~~l--~------------------------------------~~pd~~l~~e~r~-------~~~~~~l~~l-~~g~ 277 (361)
T 2gza_A 244 LLRSCL--R------------------------------------MKPTRILLAELRG-------GEAYDFINVA-ASGH 277 (361)
T ss_dssp HHHHHT--T------------------------------------SCCSEEEESCCCS-------THHHHHHHHH-HTTC
T ss_pred HHHHHH--h------------------------------------cCCCEEEEcCchH-------HHHHHHHHHH-hcCC
Confidence 888642 1 4688999999985 3466677777 4444
Q ss_pred cEEEE-ecChhhHHhhcCEEEEEccCC
Q 048695 587 HYCLS-NTPYARTVPFFDLALILTKEG 612 (846)
Q Consensus 587 ~tvi~-~h~~~~i~~~~D~vllL~~~G 612 (846)
.|++. .|..+ +...+||+..+. .|
T Consensus 278 ~~~l~t~H~~~-~~~~~~Rl~~l~-~~ 302 (361)
T 2gza_A 278 GGSITSCHAGS-CELTFERLALMV-LQ 302 (361)
T ss_dssp CSCEEEEECSS-HHHHHHHHHHHH-TT
T ss_pred CeEEEEECCCC-HHHHHHHHHHHH-hc
Confidence 56677 77754 778899999998 54
No 106
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.39 E-value=8.5e-15 Score=153.96 Aligned_cols=132 Identities=12% Similarity=-0.001 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCChhhHHHHHc---CCcc-ccceEEEcC--------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcC-
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLA---ERIP-FTGSLNGNV--------LLLCYVEKLDAHQTY-SVSESIQFSAALRVG- 517 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~La---G~~~-~~G~I~~~G--------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~- 517 (846)
++++++|+||||||||||+++|+ |+.. .+|+|.++| +.+++++|+..+.+. |+.|++.........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 9875 889888775 234556677777788 999999875421000
Q ss_pred ----CCCCHHHHHHHHHHHHH--HcC------------CCcccccccCCccC-------CCCcEEEEe----CCCCCCCH
Q 048695 518 ----KTVNAMRRHIHVELVLN--QLG------------LLPYSNQLVGSLHY-------HCPSILLLE----EPLSGVDT 568 (846)
Q Consensus 518 ----~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~v~~lSg-------~~P~iLlLD----EPTsgLD~ 568 (846)
.+.+... ..++.+.+ .++ ++...++.++.+|| .+|++++|| |||+|||.
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 0111111 12223221 223 33445677777876 789999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 048695 569 IGTLTILNILSLCQIRSG 586 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g 586 (846)
.++..+.+.++++ .+.+
T Consensus 184 ~~~~~i~~~l~~~-~~~~ 200 (246)
T 2bbw_A 184 DKPEAVAARLRQY-KDVA 200 (246)
T ss_dssp GSHHHHHHHHHHH-HHHH
T ss_pred CcHHHHHHHHHHH-HHhH
Confidence 9999999999998 5543
No 107
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.37 E-value=1.1e-14 Score=142.89 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=68.7
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCe-------EEEEEe
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVL-------LLCYVE 494 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~-------~igyv~ 494 (846)
++.+|+++ .|+ ++.++++||+++++|++++|+||||||||||+|+|+|.+|.+|+|.++|. ...+++
T Consensus 8 ~~~~~~~~-~~g-----~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~ 81 (158)
T 1htw_A 8 IPDEFSML-RFG-----KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMI 81 (158)
T ss_dssp ECSHHHHH-HHH-----HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEE
T ss_pred cCCHHHHH-HHH-----HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcce
Confidence 33445666 565 56799999999999999999999999999999999998899999999981 123789
Q ss_pred ccCcCCCC-CHHHHHHH
Q 048695 495 KLDAHQTY-SVSESIQF 510 (846)
Q Consensus 495 Q~~~~~~~-TV~E~l~f 510 (846)
|+..++ . ||.|++.+
T Consensus 82 q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEECT-TCSCTTHHHH
T ss_pred eccccc-cCCcHHHHHH
Confidence 988777 7 99999965
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.36 E-value=1.5e-14 Score=156.85 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC------------------eEEEEEeccCcCCCC-CHHHHHHHH
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV------------------LLLCYVEKLDAHQTY-SVSESIQFS 511 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G------------------~~igyv~Q~~~~~~~-TV~E~l~f~ 511 (846)
+|++++|+||||||||||++.|+|++ |.+|+|.++| +.++|++|+..+.|. ||+|++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999997 4899999988 137999999888888 999999875
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY----------HCPSILLLEEPLSGVDTIGTLTILNILSLC 581 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg----------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l 581 (846)
.... .. ..+++..|+.+..+..+.++|. .+|+.++| +||+.+...+++.++++
T Consensus 181 ~~~~----~d--------~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 181 KARG----YD--------LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF 243 (304)
T ss_dssp HHHT----CS--------EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred HhCC----CC--------EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence 3211 00 0123344544444444455544 67984433 45555555677777887
Q ss_pred HhhcCcEEEE-ecCh
Q 048695 582 QIRSGHYCLS-NTPY 595 (846)
Q Consensus 582 ~~~~g~tvi~-~h~~ 595 (846)
.++.|.|+|+ ||+.
T Consensus 244 ~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 244 HEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHCCSEEEEECTT
T ss_pred HHHcCCcEEEEECCc
Confidence 4455889888 9974
No 109
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=1.1e-12 Score=152.71 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=50.5
Q ss_pred CCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 552 HCP--SILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P--~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+| ++|+|||||+|||+.++..|.+.|+++ ++ |.+||+ ||+++.+ ..||++++|+
T Consensus 414 ~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~-~~-~~~vi~itH~~~~~-~~~d~~~~~~ 471 (517)
T 4ad8_A 414 LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-AD-TRQVLVVTHLAQIA-ARAHHHYKVE 471 (517)
T ss_dssp HCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH-HH-HSEEEEECCCHHHH-HHSSEEEEEE
T ss_pred hCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 788 999999999999999999999999999 55 899999 9998766 5799999996
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.35 E-value=2.4e-12 Score=156.33 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=106.6
Q ss_pred cccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCC---CC---HHHHHHHHHHHHHHcCCCcc-cccccCCc
Q 048695 478 PFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVGKT---VN---AMRRHIHVELVLNQLGLLPY-SNQLVGSL 549 (846)
Q Consensus 478 ~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~---~~---~~~~~~~v~~~l~~l~L~~~-~~~~v~~l 549 (846)
+....|+++|+.|+ | +.. ||.|++.|...+.++.. +. .++..+++ +.|+.+||... .++.+++|
T Consensus 434 ~~~l~v~~~g~~i~---q----~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tL 505 (972)
T 2r6f_A 434 KESLAVLVGGKHIG---E----VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTL 505 (972)
T ss_dssp TTTTTEESSSCBHH---H----HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGC
T ss_pred HHHheeEECCCcHH---H----HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccC
Confidence 46677888775442 1 223 99999999766643210 00 03445566 45899999875 79999999
Q ss_pred cC-------------CC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE-----
Q 048695 550 HY-------------HC--PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL----- 608 (846)
Q Consensus 550 Sg-------------~~--P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL----- 608 (846)
|| .+ |++|+|||||+|||+.....+++.|+++ ++.|.|||+ +|+.+++. .+|+|++|
T Consensus 506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG 583 (972)
T 2r6f_A 506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIVVEHDEDTML-AADYLIDIGPGAG 583 (972)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEEECCCHHHHH-SCSEEEEECSSSG
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHH-hCCEEEEeCCCcc
Confidence 98 44 6999999999999999999999999999 788999999 99998764 69999999
Q ss_pred -ccCCEEEEecCCCC
Q 048695 609 -TKEGHQAYFGPRGS 622 (846)
Q Consensus 609 -~~~G~~v~~G~~~~ 622 (846)
+ +|++++.|++++
T Consensus 584 ~~-gG~iv~~G~~~e 597 (972)
T 2r6f_A 584 IH-GGEVVAAGTPEE 597 (972)
T ss_dssp GG-CCSEEEEECTTT
T ss_pred CC-CCEEEEecCHHH
Confidence 5 899999999976
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.35 E-value=1.8e-12 Score=132.75 Aligned_cols=149 Identities=14% Similarity=0.045 Sum_probs=91.3
Q ss_pred Ccceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 439 STPLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 439 ~~~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
+.+.|+++. +.+++|++++|.||||||||||++.|++ +.. ..+.|+..++...+..+.+... ..
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-------~~v~~i~~~~~~~~~~~~~~~~---~~--- 69 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-------KKVAYVDTEGGFSPERLVQMAE---TR--- 69 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-------SEEEEEESSCCCCHHHHHHHHH---TT---
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-------CcEEEEECCCCCCHHHHHHHHH---hc---
Confidence 345788887 4899999999999999999999999998 322 2344554433111102222111 00
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccc-----cccCC---ccCCCCcEEEEeCCCCCCCHH--------HHHHHHHHHHHH
Q 048695 518 KTVNAMRRHIHVELVLNQLGLLPYSN-----QLVGS---LHYHCPSILLLEEPLSGVDTI--------GTLTILNILSLC 581 (846)
Q Consensus 518 ~~~~~~~~~~~v~~~l~~l~L~~~~~-----~~v~~---lSg~~P~iLlLDEPTsgLD~~--------~~~~i~~~l~~l 581 (846)
+... +++++.+.+.+..+ ..+.. +...+|+++++||||+++|+. ...++++.|+++
T Consensus 70 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l 141 (220)
T 2cvh_A 70 -GLNP-------EEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWI 141 (220)
T ss_dssp -TCCH-------HHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHH
T ss_pred -CCCh-------HHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHH
Confidence 1111 11222221111000 00000 000259999999999999973 335567778888
Q ss_pred HhhcCcEEEE-ecChh-------------hHHhhcCEEEEEcc
Q 048695 582 QIRSGHYCLS-NTPYA-------------RTVPFFDLALILTK 610 (846)
Q Consensus 582 ~~~~g~tvi~-~h~~~-------------~i~~~~D~vllL~~ 610 (846)
+++.|.|||+ +|... .+...+|++++|++
T Consensus 142 ~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 142 ARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 6667999999 88765 56789999999983
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.34 E-value=6.9e-13 Score=138.07 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=82.7
Q ss_pred ceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcC--Ccc------ccceEEEcCeEEEEEeccCcCCCCCHHHHHH-H
Q 048695 441 PLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAE--RIP------FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQ-F 510 (846)
Q Consensus 441 ~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG--~~~------~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~-f 510 (846)
.-|+.+- +-+++|++++|+||||||||||++.|++ ..+ ..|.+++++ ++...+..+.+... +
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~--------~~~~~~~~~~~~~~~~ 82 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT--------EGTFRPERLLAVAERY 82 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES--------SSCCCHHHHHHHHHHT
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC--------CCCcCHHHHHHHHHHc
Confidence 3455543 6799999999999999999999999999 343 244555544 21110001111110 0
Q ss_pred H-------HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHH-------H-----H
Q 048695 511 S-------AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTI-------G-----T 571 (846)
Q Consensus 511 ~-------a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~-------~-----~ 571 (846)
+ -.+......+..+..+.++++.+.+ ...+|+++++|||++.+|+. . .
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~ 149 (243)
T 1n0w_A 83 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMM-------------VESRYALLIVDSATALYRTDYSGRGELSARQMHL 149 (243)
T ss_dssp TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHH-------------HHSCEEEEEEETSSGGGC-------CHHHHHHHH
T ss_pred CCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHH-------------hcCCceEEEEeCchHHHHHHhcCCccHHHHHHHH
Confidence 0 0000000111222211122111111 01679999999999999985 3 3
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChhhHHh-------------------hcCEEEEEc
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYARTVP-------------------FFDLALILT 609 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~-------------------~~D~vllL~ 609 (846)
.++++.|++++++.|.|||+ +|...+... .+|++++|+
T Consensus 150 ~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 150 ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 56777777776667999999 887655433 799999998
No 113
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.2e-13 Score=155.34 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=104.0
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeE--EEEEcCCCCChhhHHHHHcCCccccceEEE---cC---eEEEE
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNM--FALLGGSRTSKVTLLQCLAERIPFTGSLNG---NV---LLLCY 492 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~--~al~GpsGaGKSTLL~~LaG~~~~~G~I~~---~G---~~igy 492 (846)
.+++++ ++ .|+ +++ |++||+++++|++ ++|+||||||||||+|+|+|..- .|.-.- .+ +.++|
T Consensus 16 ~l~~~~-~~-~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~~~~~i~~ 86 (427)
T 2qag_B 16 TVPLAG-HV-GFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGVQLQSNTY 86 (427)
T ss_dssp -CCCCC-CC--CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEE
T ss_pred eEEEee-EE-EEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccceEeeEEE
Confidence 355555 56 564 455 9999999999999 99999999999999999999841 111100 11 57999
Q ss_pred EeccCcCCCC-CHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHHHc-CCC----cccccccC-----------CccC--
Q 048695 493 VEKLDAHQTY-SVSESIQFSAALRVGKTVN--AMRRHIHVELVLNQL-GLL----PYSNQLVG-----------SLHY-- 551 (846)
Q Consensus 493 v~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~--~~~~~~~v~~~l~~l-~L~----~~~~~~v~-----------~lSg-- 551 (846)
++|++.+++. ||.||+.++.......... .+...+..++.|+.. ++. ...|..+. .++.
T Consensus 87 v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D 166 (427)
T 2qag_B 87 DLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD 166 (427)
T ss_dssp EEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred EeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence 9999888878 9999987653211000000 011234555666654 543 12233211 2221
Q ss_pred --------CCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhhcCcEEEE-ec
Q 048695 552 --------HCPSILLLEEPLSGVDTIGTLTILNILSL-CQIRSGHYCLS-NT 593 (846)
Q Consensus 552 --------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~-l~~~~g~tvi~-~h 593 (846)
.+++++++||||..|.+.....+.+.+++ + +..|.+|+. +.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L-~~~gi~I~~is~ 217 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL-VSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHH-BTTBCCCCCCC-
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHH-HHcCCcEEecCC
Confidence 68899999999999999999999999986 7 778988887 54
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=2.6e-14 Score=143.77 Aligned_cols=158 Identities=7% Similarity=-0.076 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCC------
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKT------ 519 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~------ 519 (846)
|++++|+||||||||||+++|++ +.+|++.++| ...|+++|.....+. |+++++.+.+......+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild 79 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD 79 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 78999999999999999999987 5678999998 346778887655556 89999987654331111
Q ss_pred -CCHHHHHHHHHHHHHHcCCCcccccccC---CccC--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-e
Q 048695 520 -VNAMRRHIHVELVLNQLGLLPYSNQLVG---SLHY--HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-N 592 (846)
Q Consensus 520 -~~~~~~~~~v~~~l~~l~L~~~~~~~v~---~lSg--~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~ 592 (846)
.-.....+.+.+.++.-+..... ..+. +... .+|+...+|| +||+..... ++.++.+ .+.+.++|. +
T Consensus 80 ~~~~~~~~~~~~~~~~s~g~~~~~-~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~-~~~~~~ii~ts 153 (189)
T 2bdt_A 80 YIAFPDEAEALAQTVQAKVDDVEI-RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK-GIDERYFYNTS 153 (189)
T ss_dssp SCCCHHHHHHHHHHHHHHCSSEEE-EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT-TCCTTSEEECS
T ss_pred eccCHHHHHHHHHHHHhcccCCCe-EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc-CCCccEEEeCC
Confidence 10111122233333211221100 0010 0001 4555556673 899988888 8888888 566788888 8
Q ss_pred cC-hhhHHhhcCEEEEEccCCEEEEecCCC
Q 048695 593 TP-YARTVPFFDLALILTKEGHQAYFGPRG 621 (846)
Q Consensus 593 h~-~~~i~~~~D~vllL~~~G~~v~~G~~~ 621 (846)
|. ++++.+.||+|+ + +|+++..|+++
T Consensus 154 h~~~~~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 154 HLQPTNLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp SSCGGGHHHHHHHHH--H-CGGGSCC----
T ss_pred CCChhhHHHHHHHHh--h-CCcEEEeecCC
Confidence 88 899999999998 7 99999999884
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=147.77 Aligned_cols=149 Identities=10% Similarity=-0.027 Sum_probs=80.5
Q ss_pred eEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc--eEEEcC------eEE
Q 048695 420 VTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG--SLNGNV------LLL 490 (846)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G--~I~~~G------~~i 490 (846)
.++.++||++ .|+ ++.+++|+|+.+ +|+|+||||||||+++|+|... ..| .+.+++ +.+
T Consensus 10 ~~l~~~~l~~-~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPN-QVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS 77 (418)
T ss_dssp -----CCCCC-CTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEE
T ss_pred CcEEEEecce-eEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeE
Confidence 3689999999 775 578999999998 9999999999999999999863 232 222222 568
Q ss_pred EEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCc---EEEEeCCC-CC
Q 048695 491 CYVEKLDAHQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPS---ILLLEEPL-SG 565 (846)
Q Consensus 491 gyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~---iLlLDEPT-sg 565 (846)
++++|++.+.+. ||.|++.++..... ........+.+++-++..-.... .....+ -.+|+ +|++|||| .|
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~--~~~~~~i~~~i~~~~~~~l~qr~--~IaRal-~~d~~~~vlL~ldePt~~~ 152 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDN--SNCWQPVIDYIDSKFEDYLNAES--RVNRRQ-MPDNRVQCCLYFIAPSGHG 152 (418)
T ss_dssp ECC------CEEEEEEECC-------------CHHHHHHHHHHHHHHTTTSC--C-CCCC-CCCC-CCEEEEECCC-CCS
T ss_pred EEEEecCCcccceeeeechhhhhhccc--hhhHHHHHHHHHHHHHHHHHHHH--HHHHHh-ccCCCeeEEEEEecCcccC
Confidence 999998887777 99999888653220 00011222223333332111100 000000 16888 89999999 69
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
||+... ++++++ +. +.+||+
T Consensus 153 L~~~d~----~~lk~L-~~-~v~iIl 172 (418)
T 2qag_C 153 LKPLDI----EFMKRL-HE-KVNIIP 172 (418)
T ss_dssp CCHHHH----HHHHHH-TT-TSEEEE
T ss_pred CCHHHH----HHHHHH-hc-cCcEEE
Confidence 998873 556666 43 666665
No 116
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.31 E-value=1.1e-13 Score=140.01 Aligned_cols=152 Identities=11% Similarity=0.000 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC----------eEEEEEeccCcCCCC-CHHHHHHHHHh-hhcCCCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV----------LLLCYVEKLDAHQTY-SVSESIQFSAA-LRVGKTV 520 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G----------~~igyv~Q~~~~~~~-TV~E~l~f~a~-lr~~~~~ 520 (846)
|++++|+||||||||||+++|+|+++.+| |.++| +.+||++|+. ... +..+.+.|... .+....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~~~l~~~~~~~~~~~~~~~v 77 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTRGPLSRVGLEPPPGKRECRV 77 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET--TSCEEEEEECCCCCCSSSCCEES
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec--ccceehhhcccccCCcccccccc
Confidence 78999999999999999999999877778 88877 5789999974 111 11111100000 0000000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhhcCcEEE--E--ecC
Q 048695 521 NAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEE--PLSGVDTIGTLTILNILSLCQIRSGHYCL--S--NTP 594 (846)
Q Consensus 521 ~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDE--PTsgLD~~~~~~i~~~l~~l~~~~g~tvi--~--~h~ 594 (846)
.+.. .--.-.+++.+..... .. .-...+|++|++|| |+..+|......+.++++ +...+|+ + +|+
T Consensus 78 ~~~~---~~ls~~er~~~~~l~~-~a-~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~ 148 (189)
T 2i3b_A 78 GQYV---VDLTSFEQLALPVLRN-AD-CSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKG 148 (189)
T ss_dssp SSSE---ECHHHHHTTTTTTTCC-CC-CCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCS
T ss_pred ceEE---EcchHHHHHHHHHHhh-hh-HhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCC
Confidence 0000 0001122233322111 00 00127899999999 899999876555544443 2223343 3 487
Q ss_pred hhhHHhhcCEEEEEccCCEEEEecC
Q 048695 595 YARTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 595 ~~~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
.+ ..+.|++..+. +|+++....
T Consensus 149 ~~--~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 149 KP--LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp SC--CTTHHHHHTTC-CSEEEECCS
T ss_pred Cc--hHHHHHHeecC-CcEEEEeCh
Confidence 64 34566766667 888877543
No 117
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.31 E-value=1.2e-12 Score=158.62 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=115.5
Q ss_pred CCCCChhhHHHHHcCCc-c---------ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCC--------CC--
Q 048695 461 GSRTSKVTLLQCLAERI-P---------FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGK--------TV-- 520 (846)
Q Consensus 461 psGaGKSTLL~~LaG~~-~---------~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~--------~~-- 520 (846)
.|..||++|.+.+.... | .+|+|.++|+.|.=+.+ .++.|.+.|...+.... ..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~------~~v~e~~~~~~~~~~~~~~~~~~~~~~~~ 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSR------LPLARVSELLRPYAEEREPGHAERVKNRP 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHH------SBHHHHHHHHHHHHTTCSSCSTTSSSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhh------cCHHHHHHHHHhhhhhhhhcccchhhcch
Confidence 45668999999887632 2 67888888843321111 15666666655442100 00
Q ss_pred C--------HHHHHHHHHHHHHHcCCCcc-cccccCCccC-------------CCC--cEEEEeCCCCCCCHHHHHHHHH
Q 048695 521 N--------AMRRHIHVELVLNQLGLLPY-SNQLVGSLHY-------------HCP--SILLLEEPLSGVDTIGTLTILN 576 (846)
Q Consensus 521 ~--------~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-------------~~P--~iLlLDEPTsgLD~~~~~~i~~ 576 (846)
. .++..++++ .|+.+||.+. .++.+.+||| .+| ++|+|||||+|||+.....+++
T Consensus 344 ~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 344 EQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp SHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 0 234556666 6889999976 7999999998 667 5999999999999999999999
Q ss_pred HHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCCC
Q 048695 577 ILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRGS 622 (846)
Q Consensus 577 ~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~~ 622 (846)
+|+++ ++.|.|||+ +|+++.+ ..+|+|++| + +|++++.|++++
T Consensus 423 ~l~~L-~~~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~-~G~iv~~g~~~~ 472 (842)
T 2vf7_A 423 ALENL-KRGGNSLFVVEHDLDVI-RRADWLVDVGPEAGEK-GGEILYSGPPEG 472 (842)
T ss_dssp HHHHH-HTTTCEEEEECCCHHHH-TTCSEEEEECSSSGGG-CCSEEEEECGGG
T ss_pred HHHHH-HHcCCEEEEEcCCHHHH-HhCCEEEEeCCCcccC-CCEEEEecCHHH
Confidence 99999 788999999 9999855 679999999 5 999999999876
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.29 E-value=5.9e-13 Score=148.57 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=82.5
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-c-cceEEEcC--------eEEEEEeccCcCCCC-CHHHHHH
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-F-TGSLNGNV--------LLLCYVEKLDAHQTY-SVSESIQ 509 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~-~G~I~~~G--------~~igyv~Q~~~~~~~-TV~E~l~ 509 (846)
.+|++++ +++|++++|+|||||||||||++|+|+++ . +|+|.+.| +.++||+|...-... +....
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~-- 201 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADA-- 201 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHH--
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHH--
Confidence 3677766 79999999999999999999999999985 5 89997655 345667763210000 11110
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEE
Q 048695 510 FSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYC 589 (846)
Q Consensus 510 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 589 (846)
+...| . .+|++|++|||| |+.+.. ..++. ++.|.+|
T Consensus 202 -------------------l~~~L----------------~-~~pd~illdE~~---d~e~~~---~~l~~--~~~g~~v 237 (372)
T 2ewv_A 202 -------------------LRAAL----------------R-EDPDVIFVGEMR---DLETVE---TALRA--AETGHLV 237 (372)
T ss_dssp -------------------HHHHT----------------T-SCCSEEEESCCC---SHHHHH---HHHHH--HTTTCEE
T ss_pred -------------------HHHHh----------------h-hCcCEEEECCCC---CHHHHH---HHHHH--HhcCCEE
Confidence 00000 0 679999999999 776543 34444 3568999
Q ss_pred EE-ecChhhHHhhcCEEEEEc
Q 048695 590 LS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 590 i~-~h~~~~i~~~~D~vllL~ 609 (846)
+. +|+.+ +.+.+||++.|.
T Consensus 238 i~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 238 FGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp EECCCCCS-HHHHHHHHHHTS
T ss_pred EEEECcch-HHHHHHHHHHhc
Confidence 88 88854 778888876654
No 119
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.27 E-value=6.8e-12 Score=152.95 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=94.5
Q ss_pred CHHHHHHHHHhhhcCCCCCH----------HHHHHHHHHHHHHcCCCcc-cccccCCccC-------------CC--CcE
Q 048695 503 SVSESIQFSAALRVGKTVNA----------MRRHIHVELVLNQLGLLPY-SNQLVGSLHY-------------HC--PSI 556 (846)
Q Consensus 503 TV~E~l~f~a~lr~~~~~~~----------~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg-------------~~--P~i 556 (846)
||.|.+.|...+. .+. ++..+++ +.|+.+||... .++.+++||| .+ |++
T Consensus 470 tV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~l 544 (993)
T 2ygr_A 470 SIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544 (993)
T ss_dssp HHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred CHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 9999999954443 333 3445555 35899999876 7999999998 55 689
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEE------ccCCEEEEecCCCC
Q 048695 557 LLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALIL------TKEGHQAYFGPRGS 622 (846)
Q Consensus 557 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL------~~~G~~v~~G~~~~ 622 (846)
|+|||||+|||+.....+++.|+++ ++.|.|||+ +|+.+++. .+|+|++| + +|++++.|++++
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~-gG~iv~~G~~~e 614 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRL-RDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEH-GGRIVHSGPYDE 614 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGG-CCSCCEEECHHH
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHH-HHcCCEEEEECCCHHHHH-hCCEEEEecCccccC-CCEEEEeeCHHH
Confidence 9999999999999999999999999 788999999 99998764 79999999 5 899999999854
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.26 E-value=1.1e-14 Score=162.23 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=90.6
Q ss_pred eeeceeeEEeC--CeEEEEEcCCCCChhhHHHHHcCCcc-cc----ceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHh
Q 048695 442 LFSYVTCYAKP--QNMFALLGGSRTSKVTLLQCLAERIP-FT----GSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAA 513 (846)
Q Consensus 442 iL~~vs~~v~~--Ge~~al~GpsGaGKSTLL~~LaG~~~-~~----G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~ 513 (846)
+.+.|++.+++ |+.++|+||||||||||+++|+|+++ .+ |+|.++++. ...+...+. .. +++.+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~----~~~~~~~~~~~~-~~I~~~~q 231 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL----GGDEQAMQYSDY-PQMALGHQ 231 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS----SSCTTSSCTTTH-HHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc----CCCcccCChhHH-HHHHHHHH
Confidence 45689999999 99999999999999999999999985 77 887664210 001111122 33 23332210
Q ss_pred --------hhcC---CCCCHHHHHHHHHHHHHHcCCCcccccccCCcc-CCCCcEEEEeC---CC------CCCCHHHHH
Q 048695 514 --------LRVG---KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLH-YHCPSILLLEE---PL------SGVDTIGTL 572 (846)
Q Consensus 514 --------lr~~---~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lS-g~~P~iLlLDE---PT------sgLD~~~~~ 572 (846)
.+.. ...+.. ...+...+..-.. ...+..+. +.+|+++|||| |+ +++|+..+.
T Consensus 232 ~~~~~~~t~~~nl~~~~~~~~--~~~~~~~~~~~~~----~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~ 305 (365)
T 1lw7_A 232 RYIDYAVRHSHKIAFIDTDFI--TTQAFCIQYEGKA----HPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQ 305 (365)
T ss_dssp HHHHHHHHHCSSEEEESSCHH--HHHHHHHHHHSCC----CHHHHHHHHHSCCSEEEEEECCCC-----------CCSHH
T ss_pred HHHHHHHhccCCEEEEeCCch--HHHHHHHHHcCCC----CHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHH
Confidence 0000 000000 0111111111000 00011111 16899999999 65 689999999
Q ss_pred HHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEc
Q 048695 573 TILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILT 609 (846)
Q Consensus 573 ~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~ 609 (846)
.+.+.|+++.++.|.+|++ +|+ ++..+++|++.+++
T Consensus 306 ~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 306 QFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9999999985556889888 887 46667788777665
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=1.3e-12 Score=132.78 Aligned_cols=157 Identities=10% Similarity=-0.067 Sum_probs=84.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-----c-ccceEEEcCe-----E
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-----P-FTGSLNGNVL-----L 489 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-----~-~~G~I~~~G~-----~ 489 (846)
+++++|+++ .|+ ..++++ +.+++|+.++|+|+||||||||+|.|+|.. . ..|.+...+. .
T Consensus 3 ~l~~~~~~~-~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHF-VMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------C-EEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhh-eee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 588999999 775 367888 889999999999999999999999999986 2 6676654220 0
Q ss_pred EEEEeccCcC----CCC-C---HHHHHHHHHhh-hcC--------CCCCHHHHHHHHHHHHHHcCCCcc-cccccCCccC
Q 048695 490 LCYVEKLDAH----QTY-S---VSESIQFSAAL-RVG--------KTVNAMRRHIHVELVLNQLGLLPY-SNQLVGSLHY 551 (846)
Q Consensus 490 igyv~Q~~~~----~~~-T---V~E~l~f~a~l-r~~--------~~~~~~~~~~~v~~~l~~l~L~~~-~~~~v~~lSg 551 (846)
.-. .+.+.+ .+. . .+..+...... +.. .........+.+.+.++..++... ...++..+|+
T Consensus 74 ~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 74 KRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 101 111111 011 1 12222221110 000 000111222345666777777643 2444555543
Q ss_pred --------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcE
Q 048695 552 --------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHY 588 (846)
Q Consensus 552 --------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 588 (846)
.+|+++++|||||++|.....++++.|.++ .+.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~-~~~~~~ 202 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW-FSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH-HC----
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH-Hhhccc
Confidence 567888999999999999999999999998 555544
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=3.6e-12 Score=127.07 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=72.1
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHH
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRR 525 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~ 525 (846)
++.+++|+.++|.||||+|||||+++|++... .+|.. +.|+ ++.|.+.............
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------~~~~---------~~~~~~~~~~~~~~~~~~~---- 92 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------GYFF---------DTKDLIFRLKHLMDEGKDT---- 92 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------CCEE---------EHHHHHHHHHHHHHHTCCS----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------EEEE---------EHHHHHHHHHHHhcCchHH----
Confidence 34567799999999999999999999999874 55521 1121 2333332211100000000
Q ss_pred HHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecCh
Q 048695 526 HIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS-GVDTIGTLTILNILSLCQIRSGHYCLS-NTPY 595 (846)
Q Consensus 526 ~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~ 595 (846)
+.++.+ .+|++|+||||++ ++|+..+..+.+++.+. .+.|+++|+ ||..
T Consensus 93 -----~~~~~~---------------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~-~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 -----KFLKTV---------------LNSPVLVLDDLGSERLSDWQRELISYIITYR-YNNLKSTIITTNYS 143 (180)
T ss_dssp -----HHHHHH---------------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHH-HHTTCEEEEECCCC
T ss_pred -----HHHHHh---------------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-HHcCCCEEEEcCCC
Confidence 111111 3789999999995 99999999999999988 667888888 5543
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=5.2e-12 Score=141.82 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=88.2
Q ss_pred cceeece-eeEEeCCeEEEEEcCCCCChhhHHHH--HcCCcc-ccc-----eEEEcCeE-------------EEEEeccC
Q 048695 440 TPLFSYV-TCYAKPQNMFALLGGSRTSKVTLLQC--LAERIP-FTG-----SLNGNVLL-------------LCYVEKLD 497 (846)
Q Consensus 440 ~~iL~~v-s~~v~~Ge~~al~GpsGaGKSTLL~~--LaG~~~-~~G-----~I~~~G~~-------------igyv~Q~~ 497 (846)
-.-|+.+ .+-+++|++++|+||||||||||++. +++..| ..| .+++++.. +|+.+|
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-- 241 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-- 241 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--
Confidence 3445554 37899999999999999999999994 456665 333 55555410 111110
Q ss_pred cCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHH------
Q 048695 498 AHQTYSVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGT------ 571 (846)
Q Consensus 498 ~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~------ 571 (846)
++.||+.+. ...+.++..+.++++.+.+. ..+|+++++||||+.+|+...
T Consensus 242 -----~vleni~~~------~~~~~~~~~~~l~~~~~~l~-------------~~~~~llVIDs~t~~~~~~~sg~g~l~ 297 (400)
T 3lda_A 242 -----DALNNVAYA------RAYNADHQLRLLDAAAQMMS-------------ESRFSLIVVDSVMALYRTDFSGRGELS 297 (400)
T ss_dssp -----HHHHTEEEE------ECCSHHHHHHHHHHHHHHHH-------------HSCEEEEEEETGGGGCC------CCHH
T ss_pred -----hHhhcEEEe------ccCChHHHHHHHHHHHHHHH-------------hcCCceEEecchhhhCchhhcCccchH
Confidence 222322211 01112222222222222211 157999999999999996533
Q ss_pred ------HHHHHHHHHHHhhcCcEEEE-ecCh-------------------hhHHhhcCEEEEEc
Q 048695 572 ------LTILNILSLCQIRSGHYCLS-NTPY-------------------ARTVPFFDLALILT 609 (846)
Q Consensus 572 ------~~i~~~l~~l~~~~g~tvi~-~h~~-------------------~~i~~~~D~vllL~ 609 (846)
.++++.|++++++.|.|||+ +|.. ..+.+.+|.++.|+
T Consensus 298 ~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 298 ARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 67889999997777999999 8872 23466789999998
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.19 E-value=1.1e-12 Score=149.45 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=63.1
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------------eEEEEEeccCcCCCC-
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------------LLLCYVEKLDAHQTY- 502 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------------~~igyv~Q~~~~~~~- 502 (846)
-+++|+.+++|++++|+|+||||||||+++|+|+++ .+|+|.++| +.++|++|+..+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999985 889999975 237999999877788
Q ss_pred CHHHHHHHHHh
Q 048695 503 SVSESIQFSAA 513 (846)
Q Consensus 503 TV~E~l~f~a~ 513 (846)
||++++.++..
T Consensus 363 tV~e~l~~a~~ 373 (503)
T 2yhs_A 363 VIFDAIQAAKA 373 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.17 E-value=3.4e-12 Score=139.78 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=87.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC----------------e--EEEEEeccCcCCCC-CHHHHHH
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV----------------L--LLCYVEKLDAHQTY-SVSESIQ 509 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G----------------~--~igyv~Q~~~~~~~-TV~E~l~ 509 (846)
.++|++++|+||||||||||++.|+|+++ .+|+|.++| + .+.+++|+..+.|. ||+||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999975 999999988 1 24599999888888 9999998
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 048695 510 FSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY------HCPSILLLEEPLSGVDTIGTLTILNILSLCQI 583 (846)
Q Consensus 510 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~ 583 (846)
++..... .. -+++..|+.+..+....+|++ .++.+++||.+| .+.+++.++.+.+
T Consensus 206 ~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t-------~~~~~~~~~~~~~ 266 (328)
T 3e70_C 206 HAKARGI--DV----------VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALA-------GNAIVEQARQFNE 266 (328)
T ss_dssp HHHHHTC--SE----------EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG-------TTHHHHHHHHHHH
T ss_pred HHHhccc--hh----------hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHH-------HHHHHHHHHHHHH
Confidence 7643210 00 012333444444444444443 344555666333 3567777788745
Q ss_pred hcCcEEEE-ecC
Q 048695 584 RSGHYCLS-NTP 594 (846)
Q Consensus 584 ~~g~tvi~-~h~ 594 (846)
+.|.++|+ ||.
T Consensus 267 ~~~it~iilTKl 278 (328)
T 3e70_C 267 AVKIDGIILTKL 278 (328)
T ss_dssp HSCCCEEEEECG
T ss_pred hcCCCEEEEeCc
Confidence 67888888 773
No 126
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=4.7e-14 Score=157.70 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=117.5
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCC------------c-cccceEEEcC-------------eE---EEEEeccCcC
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAER------------I-PFTGSLNGNV-------------LL---LCYVEKLDAH 499 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~------------~-~~~G~I~~~G-------------~~---igyv~Q~~~~ 499 (846)
.+++|..++|+|+||||||||+|+|+|. . |..|.+.++| +. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 5578999999999999999999999992 2 3789999987 12 3467777777
Q ss_pred CCC-CHHHHH--HHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-CCC--cEEEEeCCCCCCCHHHHHH
Q 048695 500 QTY-SVSESI--QFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-HCP--SILLLEEPLSGVDTIGTLT 573 (846)
Q Consensus 500 ~~~-TV~E~l--~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-~~P--~iLlLDEPTsgLD~~~~~~ 573 (846)
.+. +..|++ .|...++. ++.++..++..+ +..+..+++ .+| +++++|||+.++|+.....
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k 161 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEK 161 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cceeeeeccccCcchhhhhchhhhHHHHHHHHHH
Confidence 777 776666 45444431 112233333322 334444555 799 9999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecChhhHHhhcCEEE-EEccCC-EEEEecCCCC
Q 048695 574 ILNILSLCQIRSGHYCLSNTPYARTVPFFDLAL-ILTKEG-HQAYFGPRGS 622 (846)
Q Consensus 574 i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~vl-lL~~~G-~~v~~G~~~~ 622 (846)
.++.++++.++.|.|++ +|...++.++||++. +|. +| +.++.|+..+
T Consensus 162 ~~~~l~~~~~~~g~ti~-sh~~~~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 162 HLEGLRKITSRGANTLE-MKAKKEEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHTTCCSSCSSS-HHHHHHHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred HHHHHHHHHHhcCCccc-cccHHHHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 99999887234566644 889999999999999 899 99 8888877653
No 127
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.15 E-value=2.1e-10 Score=130.53 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=49.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK 610 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~ 610 (846)
+|++++|||||++||+..+..+.+.|+++ .+.|.++|+ ||+. .....||+++.+.+
T Consensus 355 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~~~ii~th~~-~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 355 PSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKN-TMFEKSDALVGVYR 411 (430)
T ss_dssp CCSEEEESSTTTTCCHHHHHHHHHHHHHH-CBTTBEEEEECSCH-HHHTTCSEEEEEEE
T ss_pred CCCEEEeCCCcccCCHHHHHHHHHHHHHH-hcCCCEEEEEECCH-HHHHhCCEEEEEEE
Confidence 78999999999999999999999999998 555788888 8885 55678999999973
No 128
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.13 E-value=1.2e-10 Score=112.69 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=60.9
Q ss_pred cccccCCccC-------------------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhh
Q 048695 542 SNQLVGSLHY-------------------HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPF 601 (846)
Q Consensus 542 ~~~~v~~lSg-------------------~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~ 601 (846)
.++++++||| .+|++|+|||||+|||+.++..+.+.|+++ ++.|+|||+ ||+. ++.+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT-GGGSSEEEEEESCG-GGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH-HccCCEEEEEEChH-HHHHh
Confidence 5677888987 479999999999999999999999999998 666899999 9998 67789
Q ss_pred cCEEEEEcc-CCE
Q 048695 602 FDLALILTK-EGH 613 (846)
Q Consensus 602 ~D~vllL~~-~G~ 613 (846)
||++++|++ +|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 999999942 553
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=1e-10 Score=113.43 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=67.5
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCC
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTV 520 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~ 520 (846)
..|+++ +|+.++|+||||+|||||+++|+|..+.+| ..+.|+...+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g------~~~~~~~~~~~~~--~----------------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAG------KNAAYIDAASMPL--T----------------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTT------CCEEEEETTTSCC--C-----------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcC------CcEEEEcHHHhhH--H-----------------
Confidence 345555 899999999999999999999999875445 2234444432111 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcE-EEE-ec
Q 048695 521 NAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHY-CLS-NT 593 (846)
Q Consensus 521 ~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t-vi~-~h 593 (846)
.. . .+|++|++|||++ +|...+..+.++++++ .+.|++ +|+ ||
T Consensus 79 -------------------~~----~-----~~~~lLilDE~~~-~~~~~~~~l~~li~~~-~~~g~~~iiits~ 123 (149)
T 2kjq_A 79 -------------------DA----A-----FEAEYLAVDQVEK-LGNEEQALLFSIFNRF-RNSGKGFLLLGSE 123 (149)
T ss_dssp -------------------GG----G-----GGCSEEEEESTTC-CCSHHHHHHHHHHHHH-HHHTCCEEEEEES
T ss_pred -------------------HH----H-----hCCCEEEEeCccc-cChHHHHHHHHHHHHH-HHcCCcEEEEECC
Confidence 00 0 4689999999998 6655588999999998 677777 777 66
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=2.5e-11 Score=126.39 Aligned_cols=58 Identities=9% Similarity=-0.061 Sum_probs=45.4
Q ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhhcCcEEEE-ecChhh--------HHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGV--DTIGTLTILNILSLCQIRSGHYCLS-NTPYAR--------TVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgL--D~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~--------i~~~~D~vllL~ 609 (846)
.+|+++++|||++.+ |+....+.+..|.+++++.|.||++ +|...+ +.+.+|.++.|+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEE
Confidence 468999999999988 6655566667677765788999999 887765 567899999998
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=2e-12 Score=129.84 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=50.5
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC----------eEEEEEeccCcCCCC-CHHHHHHHHHh
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV----------LLLCYVEKLDAHQTY-SVSESIQFSAA 513 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G----------~~igyv~Q~~~~~~~-TV~E~l~f~a~ 513 (846)
.+++|++++|+||||||||||+++|+|+ +..|.|.++| +.++|++|+.. +. ||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 6789999988 23567777543 45 89999987654
No 132
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=4.1e-12 Score=137.77 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=68.7
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEE---cC------------eEEEEEeccCc--------------
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNG---NV------------LLLCYVEKLDA-------------- 498 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~---~G------------~~igyv~Q~~~-------------- 498 (846)
.+.+|++++|+||||||||||||+|+|+.+ .+|+|.+ +| +.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 456799999999999999999999999974 9999999 77 14799999864
Q ss_pred --CCCC-CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCccC
Q 048695 499 --HQTY-SVSESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLL-PYSNQLVGSLHY 551 (846)
Q Consensus 499 --~~~~-TV~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v~~lSg 551 (846)
++|. |+ ||+.|.. .+ ..++...+++++|+.+||. +..++++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5778 88 9888752 11 1223345789999999995 777887777764
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=4e-10 Score=124.14 Aligned_cols=149 Identities=14% Similarity=-0.011 Sum_probs=82.5
Q ss_pred EEEEcCCCCChhhHHHHHcC-Cc-cccceEEEcC----------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCH
Q 048695 456 FALLGGSRTSKVTLLQCLAE-RI-PFTGSLNGNV----------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNA 522 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG-~~-~~~G~I~~~G----------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~ 522 (846)
+.|.||||+|||||+++|+| +. +..|++.++| +.+++++|.+.+.-. +-. . ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------G---NNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc---------C---Ccch
Confidence 89999999999999999999 55 4889998887 346777776543211 100 0 0011
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCccC--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 523 MRRHIHVELVLNQLGLLPYSNQLVGSLHY--HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 523 ~~~~~~v~~~l~~l~L~~~~~~~v~~lSg--~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
...++.++++.+..++.+.. .+|+ .+|+++++|||++ ||+.++..+.+.+.+. . .+.++|+ +|+.+.+.
T Consensus 107 ~~~~~~i~~~~~~~~~~~~~-----~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~-~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQVDFQD-----SKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKY-S-KNIRLIMVCDSMSPII 178 (354)
T ss_dssp HHHHHHHHHHTTTTC-----------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS-T-TTEEEEEEESCSCSSC
T ss_pred HHHHHHHHHHHHhccccccc-----cccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-c-CCCEEEEEeCCHHHHH
Confidence 11222333333333332221 4454 7899999999999 9999999999999986 3 3677777 77765432
Q ss_pred hhcCEEEEEccCCEEEEecCCCCChHHHHHHHh
Q 048695 600 PFFDLALILTKEGHQAYFGPRGSNHDIILDYFL 632 (846)
Q Consensus 600 ~~~D~vllL~~~G~~v~~G~~~~~~~~l~~~f~ 632 (846)
.- +.+ ....+.+.++.. +++.++..
T Consensus 179 ~~-----l~s-R~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 179 AP-----IKS-QCLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp HH-----HHT-TSEEEECCCCCH--HHHHHHHH
T ss_pred HH-----HHh-hceEEecCCcCH--HHHHHHHH
Confidence 21 112 344555666643 33444443
No 134
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.98 E-value=4.7e-13 Score=136.12 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~vllL~ 609 (846)
.+|++++|||+|+++|..+...|.+.|++..++ +...|. . ..+|++++++
T Consensus 123 ~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp ECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECS
T ss_pred eCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECC
Confidence 556666677778999999999999998887332 111441 1 5699998876
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.98 E-value=2.2e-11 Score=132.45 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=89.8
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEE-------------------eCCeEEEEEcCCCCChhhHHHHHcCCc---c
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYA-------------------KPQNMFALLGGSRTSKVTLLQCLAERI---P 478 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~al~GpsGaGKSTLL~~LaG~~---~ 478 (846)
+++++||++ .|. ++++++++.+ ++|+++||+||||||||||+++|+|++ |
T Consensus 37 ~i~~~~v~~-~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 37 DLSLEEVAE-IYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp TCCHHHHHH-THH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred ccchHhHHH-HHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 478899998 673 6899999988 999999999999999999999999974 5
Q ss_pred ccceEEE---cC--------eEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHcCCCcccccc
Q 048695 479 FTGSLNG---NV--------LLLCYVEKLDAHQTY-SVSESIQFSAALRVGKT-VNAMRRHIHVELVLNQLGLLPYSNQL 545 (846)
Q Consensus 479 ~~G~I~~---~G--------~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~ 545 (846)
.+|+|.+ +| +.+|++ |+..+.+. |+.+++.+...++.... +... ......+..
T Consensus 109 ~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P-------------~~~~~~~~~ 174 (308)
T 1sq5_A 109 EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAP-------------VYSHLIYDV 174 (308)
T ss_dssp TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEEC-------------CEETTTTEE
T ss_pred CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecc-------------cccccccCc
Confidence 8999999 87 346788 77667777 99999998776652211 0000 000001111
Q ss_pred cC-Ccc-CCCCcEEEEeCCCCCCCH
Q 048695 546 VG-SLH-YHCPSILLLEEPLSGVDT 568 (846)
Q Consensus 546 v~-~lS-g~~P~iLlLDEPTsgLD~ 568 (846)
+. ... ..+|+++++|.|....|.
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccceecCCCCEEEECchhhCCCc
Confidence 11 101 156889999999988873
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.97 E-value=1.3e-10 Score=128.06 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=91.1
Q ss_pred ceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc--cccceEEEc-C--------eEEEEEeccCcCCCC-CHHHHH
Q 048695 441 PLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI--PFTGSLNGN-V--------LLLCYVEKLDAHQTY-SVSESI 508 (846)
Q Consensus 441 ~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~~~G~I~~~-G--------~~igyv~Q~~~~~~~-TV~E~l 508 (846)
.-+++++.. .+|++++|+||||||||||+|+|+|.. +.+|+|.++ | +.+++++|+..+++. ||+|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-
Confidence 346677764 489999999999999999999999986 588999887 5 578999999888888 99984
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHH
Q 048695 509 QFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLT-ILNILSLC 581 (846)
Q Consensus 509 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~-i~~~l~~l 581 (846)
.+. +.++++..+++.++++.+|+.+..+..+.++||..-++-+. .|+++..+.+ ..++++++
T Consensus 282 ----~l~---~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala----~gli~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 282 ----GLW---HLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVE----NGAIAETRFENYHRILESM 344 (358)
T ss_dssp ----CCC---CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHH----HTSSCHHHHHHHHHHHHHH
T ss_pred ----hhc---CCCHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHH----hcCCCHHHHHHHHHHHHHH
Confidence 121 45666777789999999999999999999999811111111 2344444444 45566665
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.96 E-value=3.9e-12 Score=147.28 Aligned_cols=162 Identities=10% Similarity=0.100 Sum_probs=103.4
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC---------eEEEEEeccCcCCCC-CHHHH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV---------LLLCYVEKLDAHQTY-SVSES 507 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G---------~~igyv~Q~~~~~~~-TV~E~ 507 (846)
...+++++++.+++|+.++|+|||||||||||++|+|+++ .+|.|.++| +.++++.|....... |..++
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 3568899999999999999999999999999999999986 899999988 245666665432223 55555
Q ss_pred HHHHHhhhcC-----CCCCHHHHH------------------HHHHHHHHHcCCCc---------ccc---cccCCccC-
Q 048695 508 IQFSAALRVG-----KTVNAMRRH------------------IHVELVLNQLGLLP---------YSN---QLVGSLHY- 551 (846)
Q Consensus 508 l~f~a~lr~~-----~~~~~~~~~------------------~~v~~~l~~l~L~~---------~~~---~~v~~lSg- 551 (846)
+....+.+ | ..+...+.. ..++++++++.... ..+ .....+|+
T Consensus 326 l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 326 LRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 54322211 1 011111111 11233444443321 111 11122343
Q ss_pred -CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE---ecChhhHHhhcC
Q 048695 552 -HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS---NTPYARTVPFFD 603 (846)
Q Consensus 552 -~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~---~h~~~~i~~~~D 603 (846)
.+..++-+=| |+|||+.....+++.|.++ .+.|+|+++ +|.++++.+.++
T Consensus 405 ~~~R~~~ai~E-~~GlDp~~~~~~~~~l~~~-~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEVNE-ILGIDPVDKNLLVNQFVKW-DPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEEEE-EEECCSSSSCCEEEEEEEE-ETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEEEE-EcCcccCCCeEEEEEeEEE-cccCCEEEEcccHHHHHHHHHHcC
Confidence 1233333337 9999999888888888887 666889873 999999988775
No 138
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.95 E-value=7e-11 Score=128.11 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=71.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEE---cC----------e--EEEEEeccCcCC-----CC-CHHHH
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNG---NV----------L--LLCYVEKLDAHQ-----TY-SVSES 507 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~---~G----------~--~igyv~Q~~~~~-----~~-TV~E~ 507 (846)
+.+|++++|+||||||||||+|+|+ +.+ .+|+|.+ +| + .+||++|++.+. +. |+ |+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4569999999999999999999999 764 9999999 77 1 479999998553 66 99 88
Q ss_pred H--HHHH----hhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCccC
Q 048695 508 I--QFSA----ALRVGKTVNAMRRHIHVELVLNQLGLLP-YSNQLVGSLHY 551 (846)
Q Consensus 508 l--~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v~~lSg 551 (846)
+ .|.. .++.....+.++...+++++++.++|.+ ..++++..+|+
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8 4431 0111111223344467999999999986 78888888887
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.84 E-value=4.8e-11 Score=131.19 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=107.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCC-------eEEEEEcCCCCChhhHHHHHcCCc----c-ccceEEEcC--
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQ-------NMFALLGGSRTSKVTLLQCLAERI----P-FTGSLNGNV-- 487 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~G-------e~~al~GpsGaGKSTLL~~LaG~~----~-~~G~I~~~G-- 487 (846)
++.++++. .++ ++.+++++++.+++| +.++|.||||+|||||+++|+|.. . .+|++..+|
T Consensus 19 lr~~~l~~-~~g-----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 19 LRPKSLDE-FIG-----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TSCSSGGG-CCS-----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred cCCccHHH-ccC-----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 34456665 554 467999999999887 899999999999999999999986 2 677776654
Q ss_pred ----------eEEEEEeccCcCCCCCHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCccC---CC
Q 048695 488 ----------LLLCYVEKLDAHQTYSVSESIQFSAALRVGK-TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY---HC 553 (846)
Q Consensus 488 ----------~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg---~~ 553 (846)
+.++++.|.+.+.+ ++.|++.......... -....+..+.+++.++.++|.. +++.++.+|+ .+
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTT
T ss_pred HHHHHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHh
Confidence 46889988765544 8888885443221000 0011222345666677777765 7777888887 33
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecChhhHHhhcCE
Q 048695 554 PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLSNTPYARTVPFFDL 604 (846)
Q Consensus 554 P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~h~~~~i~~~~D~ 604 (846)
-.+. .+||+.+..++.++|++.++..|. +|+.+.+..++++
T Consensus 171 ~~l~------~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~ 211 (334)
T 1in4_A 171 FGII------LELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKR 211 (334)
T ss_dssp CSEE------EECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHT
T ss_pred cCce------eeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHh
Confidence 2222 678888899999999998544442 4666666666653
No 140
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=3.4e-10 Score=122.51 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=58.2
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEE---cC----------eE-EEEEeccCcCCC----C-CHHHH
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNG---NV----------LL-LCYVEKLDAHQT----Y-SVSES 507 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~---~G----------~~-igyv~Q~~~~~~----~-TV~E~ 507 (846)
+.+.+|++++|+||||+|||||+|+|+|..+ .+|+|.+ +| +. .||++|.+.+.+ . |+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 5567899999999999999999999999875 8999998 66 12 699999987655 6 89 88
Q ss_pred HH--HHHh------hhcCCCCCHHHHHHHHHHHHHHcCCCcc
Q 048695 508 IQ--FSAA------LRVGKTVNAMRRHIHVELVLNQLGLLPY 541 (846)
Q Consensus 508 l~--f~a~------lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 541 (846)
+. |... ++.......++....++++++.++|.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 83 3311 1111111222334578999999999764
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.80 E-value=1.8e-09 Score=116.32 Aligned_cols=116 Identities=15% Similarity=-0.015 Sum_probs=74.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHh---hhcCCCCCHHHHHH
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAA---LRVGKTVNAMRRHI 527 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~---lr~~~~~~~~~~~~ 527 (846)
+++.+++|.||||||||||.+.|+++++..|. +-+.+.+|+||+.+++.++++++.+... +....+.+.....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~---~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG---GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG---GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC---CCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 56889999999999999999999998863331 0033456699998876699999988631 11111122222334
Q ss_pred HHHHHHHHcCCC------cc--cccccCCccC-------------CCCcEEEEeCCCCCCCHH
Q 048695 528 HVELVLNQLGLL------PY--SNQLVGSLHY-------------HCPSILLLEEPLSGVDTI 569 (846)
Q Consensus 528 ~v~~~l~~l~L~------~~--~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~ 569 (846)
...+.++.+.-. +. ....-..+|| .+|+|||+||||+++|+.
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 566667766432 10 1111122222 378999999999999985
No 142
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.80 E-value=5.1e-12 Score=138.07 Aligned_cols=144 Identities=13% Similarity=0.035 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc---------cccceEEEcCeE---------------------------EEEE---e
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI---------PFTGSLNGNVLL---------------------------LCYV---E 494 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~---------~~~G~I~~~G~~---------------------------igyv---~ 494 (846)
++++|+|+||||||||||.|+|.. +..|+|.++|.. ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999985 388999998822 2223 2
Q ss_pred ccCcCCCC-CHHHHHHHHH--hh-hcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-----CCCcEEEEeCCCCC
Q 048695 495 KLDAHQTY-SVSESIQFSA--AL-RVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-----HCPSILLLEEPLSG 565 (846)
Q Consensus 495 Q~~~~~~~-TV~E~l~f~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-----~~P~iLlLDEPTsg 565 (846)
|+..+.+. +|.|+..++. .+ +.-...+..+...+++.+++.+++.+..++.. ++|+ ..+++++++.|---
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 33322223 4444433210 00 00000000001111223344555555554443 3444 45555555444221
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcC
Q 048695 566 VDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFD 603 (846)
Q Consensus 566 LD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D 603 (846)
|.. .++.+.|+++ + .+.+|++ +|...++..++|
T Consensus 164 -de~--~~l~~~l~~l-~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 164 -GEA--EKLHERLARI-N-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp -SCT--HHHHHHHHHH-C-SSSCEEECCSSCCCGGGGSC
T ss_pred -CHH--HHHHHHHHHh-C-CCCeEEEecccCCCHHHHhC
Confidence 221 7888899888 4 5789999 886555544444
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.73 E-value=2.9e-10 Score=128.25 Aligned_cols=143 Identities=17% Similarity=0.101 Sum_probs=81.2
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc--CeEEEEEeccC----------cCCCCCHHHHHH
Q 048695 443 FSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN--VLLLCYVEKLD----------AHQTYSVSESIQ 509 (846)
Q Consensus 443 L~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~--G~~igyv~Q~~----------~~~~~TV~E~l~ 509 (846)
-++++++++.|+.++|+|+|||||||||++|+|..+ ..+. .+. ...+|++.+++ .+.+. ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~-- 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEG-- 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGS--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCc-ccceecceeeEEEecCcceEEEEeccccccc-hhhh--
Confidence 479999999999999999999999999999999854 1100 000 02344554432 22111 0000
Q ss_pred HHHhhhcCCCCCHHH--HHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCHHHHHHH
Q 048695 510 FSAALRVGKTVNAMR--RHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDTIGTLTI 574 (846)
Q Consensus 510 f~a~lr~~~~~~~~~--~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~~~~~~i 574 (846)
....... ..++++.++..+++. +..+.++|+ .+|.+|++ +++|...+ ..
T Consensus 223 --------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~ 286 (416)
T 1udx_A 223 --------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EA 286 (416)
T ss_dssp --------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HH
T ss_pred --------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HH
Confidence 0111100 001122333334443 333333433 68999999 99999877 45
Q ss_pred HHHHHHHHhhcCcEEEE--ecChhhHHhhcCEE
Q 048695 575 LNILSLCQIRSGHYCLS--NTPYARTVPFFDLA 605 (846)
Q Consensus 575 ~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~v 605 (846)
++.+++..++.|.+++. .+....+.++++.+
T Consensus 287 ~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 287 VKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 55555443566777776 55555555555544
No 144
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.69 E-value=3.9e-09 Score=120.67 Aligned_cols=47 Identities=21% Similarity=0.061 Sum_probs=44.5
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV 487 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G 487 (846)
..+|+|||+++++ ++++|+|||||||||||++|+|+. |.+|+|.++|
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 5689999999999 999999999999999999999997 4999999998
No 145
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.69 E-value=2e-10 Score=129.59 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=83.7
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCe-----------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVL----------- 488 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~----------- 488 (846)
.++++|+++ .++ .+.+|+++ + .++|++++|+|||||||||||++|+|.++ .+|+|.+.|.
T Consensus 143 ~~~l~~Lg~-~~~-----~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q 214 (418)
T 1p9r_A 143 RLDLHSLGM-TAH-----NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQ 214 (418)
T ss_dssp CCCGGGSCC-CHH-----HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEE
T ss_pred CCCHHHcCC-CHH-----HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcce
Confidence 456677776 443 45688888 5 48999999999999999999999999875 8899998771
Q ss_pred -----EEEEEe---------ccCcCC------CC-CHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccc
Q 048695 489 -----LLCYVE---------KLDAHQ------TY-SVSESIQFSAALRVG-KTVNAMRRHIHVELVLNQLGLLPYSNQLV 546 (846)
Q Consensus 489 -----~igyv~---------Q~~~~~------~~-TV~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 546 (846)
.+|+.+ |++... .. |+++++.++..-+.. .........+ +.+.|..+|+.+.. .+
T Consensus 215 ~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~ 291 (418)
T 1p9r_A 215 TQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS 291 (418)
T ss_dssp EECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH
T ss_pred EEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH
Confidence 234544 765442 23 888888876432110 0001111112 22356778887653 66
Q ss_pred CCccC-----------CCCcEEE
Q 048695 547 GSLHY-----------HCPSILL 558 (846)
Q Consensus 547 ~~lSg-----------~~P~iLl 558 (846)
.+||+ .+|++..
T Consensus 292 ~~LSgg~~QRLaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQRLVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEEEEEEECTTTCEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCccC
Confidence 67776 7788754
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.69 E-value=1.3e-08 Score=109.83 Aligned_cols=139 Identities=10% Similarity=0.029 Sum_probs=90.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhh-cCCCCCHHHHHHH
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALR-VGKTVNAMRRHIH 528 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr-~~~~~~~~~~~~~ 528 (846)
++|++++++||||+||||+++.|++... .+| ++++++.+|.. ..++.|.+...+... .+...... ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~~~~~~gl~~~~~~~--~~~ 172 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKTYAELLQAPLEVCYT--KEE 172 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHHHHTTTTCCCCBCSS--HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHHHHHhcCCCeEecCC--HHH
Confidence 5799999999999999999999999875 567 45677777652 227788887654321 11100000 011
Q ss_pred HHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--hhcCcEEEE--ecChhhHHhhcCE
Q 048695 529 VELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQ--IRSGHYCLS--NTPYARTVPFFDL 604 (846)
Q Consensus 529 v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~--~~~g~tvi~--~h~~~~i~~~~D~ 604 (846)
+...++.+ .+|+++|+| |+|+|+..+..+.++.+-+. +..+..+++ +|...++.+.+|+
T Consensus 173 l~~al~~~---------------~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~ 235 (296)
T 2px0_A 173 FQQAKELF---------------SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKR 235 (296)
T ss_dssp HHHHHHHG---------------GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTT
T ss_pred HHHHHHHh---------------cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHH
Confidence 22222211 468999999 99999876655554444331 123445666 8888888888887
Q ss_pred EEEEccCCEEEEe
Q 048695 605 ALILTKEGHQAYF 617 (846)
Q Consensus 605 vllL~~~G~~v~~ 617 (846)
+..+. .+.++..
T Consensus 236 ~~~l~-~~giVlt 247 (296)
T 2px0_A 236 FSSVP-VNQYIFT 247 (296)
T ss_dssp TSSSC-CCEEEEE
T ss_pred HhcCC-CCEEEEe
Confidence 76666 6777764
No 147
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=2.2e-08 Score=110.59 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=83.9
Q ss_pred ceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 441 PLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 441 ~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
.-|+.+- +-+++|+++.|.||+|+|||||+..++.... ..|. +.|+.-+.... .. ...++...
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~-------vlyi~~E~~~~--~~-----~a~~lG~~ 112 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI-------AAFIDAEHALD--PE-----YAKKLGVD 112 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------EEEEESSCCCC--HH-----HHHHTTCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-------EEEEECCCCcC--HH-----HHHHcCCC
Confidence 4455543 4799999999999999999999888876542 3333 34444432111 11 01111100
Q ss_pred -------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCC----------CH---HHHHHHHHH
Q 048695 518 -------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGV----------DT---IGTLTILNI 577 (846)
Q Consensus 518 -------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgL----------D~---~~~~~i~~~ 577 (846)
...+.++.. ++++.+ +. ..+|+++++|||++.+ |+ ..++.+.+.
T Consensus 113 ~~~l~i~~~~~~e~~l----~~~~~l---------~~---~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~ 176 (349)
T 2zr9_A 113 TDSLLVSQPDTGEQAL----EIADML---------VR---SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA 176 (349)
T ss_dssp GGGCEEECCSSHHHHH----HHHHHH---------HT---TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHH
T ss_pred HHHeEEecCCCHHHHH----HHHHHH---------Hh---cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHH
Confidence 000111111 111111 10 1579999999999998 33 222334444
Q ss_pred HHHH---HhhcCcEEEE-ecChh----------------hHHhhcCEEEEEccCCEEEEecC
Q 048695 578 LSLC---QIRSGHYCLS-NTPYA----------------RTVPFFDLALILTKEGHQAYFGP 619 (846)
Q Consensus 578 l~~l---~~~~g~tvi~-~h~~~----------------~i~~~~D~vllL~~~G~~v~~G~ 619 (846)
++++ +++.|.+||+ +|... .+...+|.++.|+ .+++...|+
T Consensus 177 l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lr-r~~~~k~g~ 237 (349)
T 2zr9_A 177 LRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVR-RIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEE-EEEEECSSS
T ss_pred HHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEE-EeeeeecCc
Confidence 4444 3677999999 77543 2567899999998 666655554
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.68 E-value=2.6e-08 Score=113.98 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=104.3
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHH-HHH----
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQ-FSA---- 512 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~-f~a---- 512 (846)
+-..|+++++-+++|+++.|.|++|+|||||+..|++... ..| ..+.|+.-+.. +..+.+.+. ...
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~ 260 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINA 260 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCH
Confidence 3567999999999999999999999999999999998653 334 23444443210 001222211 000
Q ss_pred -hhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCC--------HHH
Q 048695 513 -ALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVD--------TIG 570 (846)
Q Consensus 513 -~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD--------~~~ 570 (846)
+++.+ ..+.+ ..+++.+.++.++..++.-...++++. .+|+++++|+++...+ ...
T Consensus 261 ~~l~~g-~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~ 338 (454)
T 2r6a_A 261 QNLRTG-KLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQE 338 (454)
T ss_dssp HHHHTS-CCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHH
T ss_pred HHHhcC-CCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHH
Confidence 11111 23333 334566666666554433222233332 6899999999998774 234
Q ss_pred HHHHHHHHHHHHhhcCcEEEE-ec------------Ch-------hhHHhhcCEEEEEcc
Q 048695 571 TLTILNILSLCQIRSGHYCLS-NT------------PY-------ARTVPFFDLALILTK 610 (846)
Q Consensus 571 ~~~i~~~l~~l~~~~g~tvi~-~h------------~~-------~~i~~~~D~vllL~~ 610 (846)
..++.+.|++++++.|.+||+ +| |. ..+...+|.|++|++
T Consensus 339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 467888899997788999999 88 21 157788999999983
No 149
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.67 E-value=2.9e-10 Score=125.16 Aligned_cols=75 Identities=9% Similarity=-0.074 Sum_probs=63.3
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC------------
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV------------ 487 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G------------ 487 (846)
+++.+|+++ .|+ .+.+|+++|+++++|++++|+||||||||||+++|+|+++ .+|+|.+.|
T Consensus 29 ~ie~~~~~~-~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADH-RAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHH-HHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCccc-ccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 477888888 665 4679999999999999999999999999999999999874 889998876
Q ss_pred ----eEEEEEeccCcCCC
Q 048695 488 ----LLLCYVEKLDAHQT 501 (846)
Q Consensus 488 ----~~igyv~Q~~~~~~ 501 (846)
+++++++|++.+++
T Consensus 103 ~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp SCCGGGSTTGGGCTTEEE
T ss_pred HHHhhhheeeccCccccc
Confidence 23677888766553
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.63 E-value=2.1e-09 Score=109.71 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=40.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHH
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSES 507 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~ 507 (846)
.++|++++|+||||||||||+++|+|+++..| ..+|+|+|++.++..+..++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g------~~~g~v~~d~~~~~~~~~~~ 70 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG------LPAEVVPMDGFHLDNRLLEP 70 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT------CCEEEEESGGGBCCHHHHGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC------CceEEEecCCCcCCHHHHHH
Confidence 57899999999999999999999999985324 45788888876654343333
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.62 E-value=1.6e-09 Score=109.68 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=43.1
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEEEEEeccCcCCCC-CHHHHHH
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLLCYVEKLDAHQTY-SVSESIQ 509 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~igyv~Q~~~~~~~-TV~E~l~ 509 (846)
|+.+++|++++|+||||||||||+++|+|+.| .+.++| +.++|++|++..++. ++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999875 344443 347788887666555 5555443
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.56 E-value=4.7e-08 Score=105.47 Aligned_cols=124 Identities=13% Similarity=0.027 Sum_probs=75.8
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCC
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQ 500 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~ 500 (846)
+..+++++ .|+ ++. +++++. +|++++++|+||+||||++..|+|... ..|+|.+.+ .+. .
T Consensus 77 ~~~~~l~~-~~~-----~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~-------~d~--~ 137 (295)
T 1ls1_A 77 TVYEALKE-ALG-----GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA-------ADT--Q 137 (295)
T ss_dssp HHHHHHHH-HTT-----SSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE-------CCS--S
T ss_pred HHHHHHHH-HHC-----CCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec-------CCc--c
Confidence 45667777 564 122 678888 999999999999999999999999985 778887653 111 1
Q ss_pred CC-CHHHHHH-HHHhhhcC---C--CCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC-CCCCCHHHHH
Q 048695 501 TY-SVSESIQ-FSAALRVG---K--TVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP-LSGVDTIGTL 572 (846)
Q Consensus 501 ~~-TV~E~l~-f~a~lr~~---~--~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP-TsgLD~~~~~ 572 (846)
.. ++ +.+. .......+ . ..++.+. ....++.+. ..+++++++||| ++|+|.....
T Consensus 138 ~~~~~-~ql~~~~~~~~l~~~~~~~~~~p~~l---~~~~l~~~~-------------~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 138 RPAAR-EQLRLLGEKVGVPVLEVMDGESPESI---RRRVEEKAR-------------LEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp CHHHH-HHHHHHHHHHTCCEEECCTTCCHHHH---HHHHHHHHH-------------HHTCCEEEEECCCCSSCCHHHHH
T ss_pred cHhHH-HHHHHhcccCCeEEEEcCCCCCHHHH---HHHHHHHHH-------------hCCCCEEEEeCCCCccccHHHHH
Confidence 11 11 1111 00000000 0 0011111 011111110 057899999999 9999999888
Q ss_pred HHHHHHHHH
Q 048695 573 TILNILSLC 581 (846)
Q Consensus 573 ~i~~~l~~l 581 (846)
++.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 888888776
No 153
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.54 E-value=1.4e-07 Score=93.61 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEcc-CCEE
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTK-EGHQ 614 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~-~G~~ 614 (846)
.+|++++|||||+|||+.++..+.+.|+++ .+.+ ++|+ ||+. .+.+.+|+++.+.. +|..
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~-~~~~-~~ivith~~-~~~~~ad~i~~v~~~~g~s 146 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKES-SKES-QFIVITLRD-VMMANADKIIGVSMRDGVS 146 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTS-EEEEECSCH-HHHTTCSEEEEEEEETTEE
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHh-ccCC-EEEEEEecH-HHHHhCCEEEEEEecCCEE
Confidence 356899999999999999999999999998 5544 5555 6665 45689999986642 5543
No 154
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.45 E-value=3.6e-07 Score=101.74 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred CC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEEEEEccCCE
Q 048695 552 HC-PSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLALILTKEGH 613 (846)
Q Consensus 552 ~~-P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~vllL~~~G~ 613 (846)
.+ |++|+|||||+|||+..+..+.+.|+++ ++ +.+||+ ||+.+ +...+|++++|+++|.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~th~~~-~~~~~d~~~~l~k~~~ 363 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKV-KS-IPQMIIITHHRE-LEDVADVIINVKKDGN 363 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CS-CSEEEEEESCGG-GGGGCSEEEEEEESSS
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-cc-CCeEEEEEChHH-HHhhCCEEEEEEecCC
Confidence 47 9999999999999999999999999997 44 457888 99975 6789999999985553
No 155
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.42 E-value=7.3e-07 Score=98.32 Aligned_cols=136 Identities=10% Similarity=-0.023 Sum_probs=82.3
Q ss_pred cceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceE-EEcC---------eEEEEEeccCcCCCC-CHH
Q 048695 440 TPLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSL-NGNV---------LLLCYVEKLDAHQTY-SVS 505 (846)
Q Consensus 440 ~~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I-~~~G---------~~igyv~Q~~~~~~~-TV~ 505 (846)
-.-||.+- +-+++|+++.|.||+|+|||||+..+++... ..|.+ ++++ +++|+.+|+..+... ++.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 34556553 4799999999999999999999999998764 55554 3333 122333322211111 322
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC----------------HH
Q 048695 506 ESIQFSAALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD----------------TI 569 (846)
Q Consensus 506 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD----------------~~ 569 (846)
+.+. .++++++ ..+|+++++|+-++=.. ..
T Consensus 126 ~~l~------------------~~~~l~~----------------~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar 171 (356)
T 3hr8_A 126 QALE------------------IVDELVR----------------SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQAR 171 (356)
T ss_dssp HHHH------------------HHHHHHH----------------TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHH
T ss_pred HHHH------------------HHHHHhh----------------hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHH
Confidence 2221 1111111 04688999998655443 12
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecCh----------------hhHHhhcCEEEEEc
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPY----------------ARTVPFFDLALILT 609 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~----------------~~i~~~~D~vllL~ 609 (846)
...++++.|++++++.|.+||+ .|-. ..+...+|.++.|.
T Consensus 172 ~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~ 228 (356)
T 3hr8_A 172 LMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVR 228 (356)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEE
Confidence 2334566677776777999999 6652 12456789999998
No 156
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.40 E-value=8.7e-09 Score=106.78 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=41.9
Q ss_pred ceEEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcC
Q 048695 419 PVTFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNV 487 (846)
Q Consensus 419 ~~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G 487 (846)
+..|+++|+.. .++ . ++++++ ++++|+|||||||||||++|+|.+ |.+|+|.++|
T Consensus 7 ~~~l~l~~~~~-~~~------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 7 FRSLTLINWNG-FFA------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEEEETT-EEE------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred eeEEEEEeeec-ccC------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 45789999876 443 1 455566 899999999999999999999997 4999999988
No 157
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.38 E-value=1.8e-09 Score=115.25 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=51.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEEEEEeccC-cCCCC-CH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLLCYVEKLD-AHQTY-SV 504 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~igyv~Q~~-~~~~~-TV 504 (846)
...+++++++.+++| ++|.||||||||||+++|+|.... |.|.++| +.+++++|+. ...|. ++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 457899999999999 999999999999999999998643 6788877 2355666653 33444 55
Q ss_pred HHHHH
Q 048695 505 SESIQ 509 (846)
Q Consensus 505 ~E~l~ 509 (846)
.|++.
T Consensus 109 ~Deid 113 (274)
T 2x8a_A 109 FDEVD 113 (274)
T ss_dssp EETCT
T ss_pred eehhh
Confidence 55554
No 158
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.37 E-value=9.2e-08 Score=99.00 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=22.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHc-CCcc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLA-ERIP 478 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~La-G~~~ 478 (846)
+.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999999 9874
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.28 E-value=4e-08 Score=116.50 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=50.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEEcC-------eEEEEEecc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNGNV-------LLLCYVEKL 496 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~~G-------~~igyv~Q~ 496 (846)
...++++++..+++|+.++|+||||+|||||+++|+|..+ ..|.+.+++ ..+++++|.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g 112 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPAC 112 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETT
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecc
Confidence 5679999999999999999999999999999999999986 448888866 568888764
No 160
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.26 E-value=6.8e-08 Score=101.58 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=36.2
Q ss_pred eEEEEece-eeeeeccCCCCCcceeeceeeEEeC---CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 420 VTFVFEGL-TFSRYEEGSNESTPLFSYVTCYAKP---QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 420 ~~l~~~~l-~~~~~~~~~~~~~~iL~~vs~~v~~---Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+++++|+ ++ .|+ +++.+|+|+|+.+++ |+.++|+|+|||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~-~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHS-PFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeE-Eec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999 99 772 157899999999999 9999999999999999999999854
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.25 E-value=5.7e-08 Score=98.34 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=30.4
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV 487 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G 487 (846)
...++|++++|+||||||||||+++|+|++ |.+.++|
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~ 60 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEA 60 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcc
Confidence 455789999999999999999999999876 7787776
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.24 E-value=7.4e-08 Score=96.55 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=30.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc------------ccceEEEcCeEE
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP------------FTGSLNGNVLLL 490 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~------------~~G~I~~~G~~i 490 (846)
.++|+|+||||||||++.++|... .+|+|.++|+.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 589999999999999999999752 368899998543
No 163
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.24 E-value=5.7e-07 Score=97.31 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=35.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN 486 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~ 486 (846)
.+++..++|++++|+|||||||||+++.|++.+. ..|+|.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456678999999999999999999999999875 66777654
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.21 E-value=4.2e-07 Score=104.58 Aligned_cols=152 Identities=8% Similarity=-0.002 Sum_probs=89.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcC-Cc-c-ccceEEEcC---eEEEEEeccCcCCCC-------CHHHHHHHH
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAE-RI-P-FTGSLNGNV---LLLCYVEKLDAHQTY-------SVSESIQFS 511 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG-~~-~-~~G~I~~~G---~~igyv~Q~~~~~~~-------TV~E~l~f~ 511 (846)
.+++++.+|..+.|.|++||||||+|++|.. ++ . ..|++.+.+ +... ++.....|+ ...+....
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e--l~~~~~lPhl~~~Vvtd~~~a~~~- 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE--LSVYEGIPHLLTEVVTDMKDAANA- 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG--GGGGTTCTTBSSSCBCSHHHHHHH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh--hhhhccCCcccceeecCHHHHHHH-
Confidence 4677888899999999999999999999875 32 2 557766543 2211 121111111 23332221
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCccccc--cc-CCcc-----------------------CCCCc-EEEEeCCCC
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQ--LV-GSLH-----------------------YHCPS-ILLLEEPLS 564 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~v-~~lS-----------------------g~~P~-iLlLDEPTs 564 (846)
++ ...+|.++|. ++++..|+.+..+. .+ ..+| ...|. ++++||+++
T Consensus 236 --L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ 308 (512)
T 2ius_A 236 --LR----WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD 308 (512)
T ss_dssp --HH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred --HH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence 11 1124455553 77888888765321 11 0011 14677 689999999
Q ss_pred CCCHHHHHHHHHHHHHH---HhhcCcEEEE-ecChh-------hHHhhcCEEEE
Q 048695 565 GVDTIGTLTILNILSLC---QIRSGHYCLS-NTPYA-------RTVPFFDLALI 607 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l---~~~~g~tvi~-~h~~~-------~i~~~~D~vll 607 (846)
-+|.. ...+.+.+.++ .+..|.++|+ ||..+ ...++.+||.+
T Consensus 309 ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 309 LMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 88843 34455555555 2344778888 88876 23345567665
No 165
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=1.1e-07 Score=96.14 Aligned_cols=49 Identities=18% Similarity=0.048 Sum_probs=42.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceE--EEcC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSL--NGNV 487 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I--~~~G 487 (846)
.....+.++...++|++++|+||||||||||++.|+++++..|.+ .++|
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 456778888888999999999999999999999999988767877 6665
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.08 E-value=3.5e-08 Score=105.19 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=60.7
Q ss_pred EEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEE
Q 048695 423 VFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLL 490 (846)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~i 490 (846)
+++++.+ .++ ...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++| +.+
T Consensus 51 ~l~~l~~-~~~-----~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i 121 (278)
T 1iy2_A 51 ELKEIVE-FLK-----NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARV 121 (278)
T ss_dssp HHHHHHH-HHH-----CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHH
T ss_pred HHHHHHH-HHH-----CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHH
Confidence 4456665 454 457899999999999 89999999999999999999875 78888876 235
Q ss_pred EEEeccCc-CCCC-CHHHHHHH
Q 048695 491 CYVEKLDA-HQTY-SVSESIQF 510 (846)
Q Consensus 491 gyv~Q~~~-~~~~-TV~E~l~f 510 (846)
++++|+.. ..+. ++.|++..
T Consensus 122 ~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 122 RDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp HHHHHHHHTSCSEEEEEETHHH
T ss_pred HHHHHHHHhcCCcEEehhhhHh
Confidence 67777643 4556 77777743
No 167
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.08 E-value=1.5e-06 Score=85.95 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=30.8
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++++.+.+| +++|+||||||||||+++|.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999 99999999999999999998865
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.08 E-value=3.3e-07 Score=92.09 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc------c------ccceEEEcCeEE
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI------P------FTGSLNGNVLLL 490 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~------~------~~G~I~~~G~~i 490 (846)
.++|+|+||||||||++.|+|.. | .+|+|.++|+.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 47999999999999999999974 2 257899998543
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.07 E-value=4.2e-07 Score=98.88 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=46.5
Q ss_pred CcceeeceeeEEeCCe------EEEEEcCCCCChhhHHHHHcCCcc---ccceEEEcCeEEEEEeccCcCCCC
Q 048695 439 STPLFSYVTCYAKPQN------MFALLGGSRTSKVTLLQCLAERIP---FTGSLNGNVLLLCYVEKLDAHQTY 502 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge------~~al~GpsGaGKSTLL~~LaG~~~---~~G~I~~~G~~igyv~Q~~~~~~~ 502 (846)
+++.|++++..+.+++ ++||+||||||||||+++|++++. .+|. ++++.+|+.+.+.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------VEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------EEEEEGGGGBCCH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------EEEEeecccccch
Confidence 5678888888888877 999999999999999999999864 3443 5778888776654
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.06 E-value=4.8e-08 Score=102.52 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=60.1
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LL 489 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~ 489 (846)
.+++++.+ .++ +..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++| +.
T Consensus 26 ~~l~~l~~-~~~-----~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 96 (254)
T 1ixz_A 26 EELKEIVE-FLK-----NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAAR 96 (254)
T ss_dssp HHHHHHHH-HHH-----CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHH
T ss_pred HHHHHHHH-HHH-----CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHH
Confidence 34556666 454 457899999999999 99999999999999999999775 67888876 23
Q ss_pred EEEEeccC-cCCCC-CHHHHHHH
Q 048695 490 LCYVEKLD-AHQTY-SVSESIQF 510 (846)
Q Consensus 490 igyv~Q~~-~~~~~-TV~E~l~f 510 (846)
+++++|+. ...+. ++.|++..
T Consensus 97 i~~~~~~~~~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEIDA 119 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETHHH
T ss_pred HHHHHHHHHhcCCeEEEehhhhh
Confidence 55667764 24555 77777743
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=1.1e-05 Score=89.18 Aligned_cols=125 Identities=13% Similarity=-0.007 Sum_probs=72.1
Q ss_pred CCe--EEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHH
Q 048695 452 PQN--MFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG-KTVNAMRRHIH 528 (846)
Q Consensus 452 ~Ge--~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~-~~~~~~~~~~~ 528 (846)
+|. .+.|.||+|+|||||++.+++.....+ +..+.++.-.+...+..+.+.+.-......+ .+.+..+..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 115 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-----TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLAL 115 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-----CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-----CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHH
Confidence 456 899999999999999999998765221 1123333321111111222222211111111 12233333333
Q ss_pred HHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhh---cCcEEEE-ecChhhH
Q 048695 529 VELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIR---SGHYCLS-NTPYART 598 (846)
Q Consensus 529 v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~---~g~tvi~-~h~~~~i 598 (846)
+.+.++. ..+|.+|++||+... |......+.+.+.++ .. .+.++|+ +|+.+..
T Consensus 116 l~~~l~~---------------~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~-~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 116 LVEHLRE---------------RDLYMFLVLDDAFNL-APDILSTFIRLGQEA-DKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHHH---------------TTCCEEEEEETGGGS-CHHHHHHHHHHTTCH-HHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhh---------------cCCeEEEEEECcccc-chHHHHHHHHHHHhC-CCCCcCCEEEEEEECCchHH
Confidence 4433332 146889999999876 888888888888776 44 5777777 7776533
No 172
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.90 E-value=1.1e-06 Score=92.47 Aligned_cols=64 Identities=20% Similarity=0.023 Sum_probs=45.7
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHc---CCcc-ccceEE--------EcC-------------eEEEEEecc
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLA---ERIP-FTGSLN--------GNV-------------LLLCYVEKL 496 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~La---G~~~-~~G~I~--------~~G-------------~~igyv~Q~ 496 (846)
++++.+ ++|++++|+||||||||||+++|+ |+.. ++|.+. .+| +.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 8864 889988 555 457888865
Q ss_pred C-----cCCCC-CHHHHH
Q 048695 497 D-----AHQTY-SVSESI 508 (846)
Q Consensus 497 ~-----~~~~~-TV~E~l 508 (846)
+ ..... ++.+++
T Consensus 96 ~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp ETTEEEEEETTEECTTGG
T ss_pred CCCCceEEECCeehhHHH
Confidence 3 22334 555554
No 173
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=4.2e-06 Score=84.36 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=24.7
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
....++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999999999999999765
No 174
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.86 E-value=3.3e-06 Score=84.29 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
|++++|+||||||||||+++|+|+.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999876
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=5e-06 Score=85.99 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=33.2
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV 487 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G 487 (846)
++..++|++++|.|+||||||||+++|+|+ .|+|.++|
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEe
Confidence 445589999999999999999999999997 68887765
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.81 E-value=3.1e-05 Score=88.60 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=65.1
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKT 519 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~ 519 (846)
...++++++.+++| +.|.||+|+|||||.++|++.... ..-++.-.+.. ..-+ +
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------~f~~is~~~~~-~~~~--------------g 91 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------PFFHISGSDFV-ELFV--------------G 91 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------CEEEEEGGGTT-TCCT--------------T
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------CeeeCCHHHHH-HHHh--------------c
Confidence 34667777778888 789999999999999999986421 01111111110 0000 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---hhcC
Q 048695 520 VNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEP----------LSGVDTIGTLTILNILSLCQ---IRSG 586 (846)
Q Consensus 520 ~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEP----------TsgLD~~~~~~i~~~l~~l~---~~~g 586 (846)
. ...++..+++... ...|.|||+||+ ++|.|......+.++++.+. .+.+
T Consensus 92 --~--~~~~~r~lf~~A~-------------~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 92 --V--GAARVRDLFAQAK-------------AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --H--HHHHHHHHHHHHH-------------HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --c--cHHHHHHHHHHHH-------------hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 0112222222210 056999999999 44777777777777777662 1345
Q ss_pred cEEEE-ecChhhH
Q 048695 587 HYCLS-NTPYART 598 (846)
Q Consensus 587 ~tvi~-~h~~~~i 598 (846)
..||. ||+.+.+
T Consensus 155 viVIaaTn~~~~L 167 (476)
T 2ce7_A 155 IIVMAATNRPDIL 167 (476)
T ss_dssp EEEEEEESCGGGS
T ss_pred EEEEEecCChhhh
Confidence 66666 8876543
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.81 E-value=6.4e-06 Score=82.91 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=28.1
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccc
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTG 481 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G 481 (846)
++++|++++|+||||||||||+++|+++. |..|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 57899999999999999999999999987 5444
No 178
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.77 E-value=6.5e-06 Score=81.70 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc--ccceEEE
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP--FTGSLNG 485 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~~ 485 (846)
.+|++++|+||||||||||++.|++..+ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3689999999999999999999999875 4566544
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.76 E-value=6.7e-06 Score=89.52 Aligned_cols=46 Identities=20% Similarity=0.100 Sum_probs=39.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV 487 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G 487 (846)
+++++++..++|++++++|+||+||||++..|++.+. ..|+|.+.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3478999999999999999999999999999999875 778887654
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.75 E-value=4.4e-06 Score=99.86 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=67.4
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCCc---cccceEEEcC------------eEEEEEeccCcCCCCCHHHHHHHH
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAERI---PFTGSLNGNV------------LLLCYVEKLDAHQTYSVSESIQFS 511 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~---~~~G~I~~~G------------~~igyv~Q~~~~~~~TV~E~l~f~ 511 (846)
|+.+++|+.++|+|++|+|||||++.|++.. +..|+| .+| +.+++..|...+...++..|+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli-- 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL-- 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE--
Confidence 3567889999999999999999999999654 366777 444 1233333332211111111111
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 512 AALRVGKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 512 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
-.|.. .+-...+...+. ..+..++++| |+.|+|+.+. +.++.+ .+.|.++|+
T Consensus 80 ---DTpG~---~~f~~~~~~~l~----------------~ad~~ilVvD-~~~g~~~qt~----~~~~~~-~~~~ip~il 131 (665)
T 2dy1_A 80 ---DAPGY---GDFVGEIRGALE----------------AADAALVAVS-AEAGVQVGTE----RAWTVA-ERLGLPRMV 131 (665)
T ss_dssp ---ECCCS---GGGHHHHHHHHH----------------HCSEEEEEEE-TTTCSCHHHH----HHHHHH-HHTTCCEEE
T ss_pred ---eCCCc---cchHHHHHHHHh----------------hcCcEEEEEc-CCcccchhHH----HHHHHH-HHccCCEEE
Confidence 00110 000111222222 1667789999 9999998876 333444 445777777
Q ss_pred -ecChhh
Q 048695 592 -NTPYAR 597 (846)
Q Consensus 592 -~h~~~~ 597 (846)
.|.++.
T Consensus 132 v~NKiD~ 138 (665)
T 2dy1_A 132 VVTKLDK 138 (665)
T ss_dssp EEECGGG
T ss_pred EecCCch
Confidence 666654
No 181
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.72 E-value=3.7e-05 Score=93.44 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=42.1
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEE
Q 048695 552 HCPSILLLEEPLS-GVDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLA 605 (846)
Q Consensus 552 ~~P~iLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~v 605 (846)
.+++++++|||.. +||......+++.+.+. ....++|++ ||+.+.+.+++++.
T Consensus 207 ~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 207 SRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred cCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhcCC
Confidence 7899999999996 99988777777777665 445667777 99988888887753
No 182
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.71 E-value=4.2e-06 Score=82.73 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc-c---cceEEEcC
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP-F---TGSLNGNV 487 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~-~---~G~I~~~G 487 (846)
++++|+|+||||||||++.|+|+++ . .|.|.++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 5799999999999999999999975 5 79999987
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.62 E-value=9.9e-06 Score=92.17 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhhcCcEEEE-ecC-hhhHHhhcCEEEE-EccCCEEEEecCCCC
Q 048695 553 CPSILLLEEPLSGVDT-IGTLTILNILSLCQIRSGHYCLS-NTP-YARTVPFFDLALI-LTKEGHQAYFGPRGS 622 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~-~~~~~i~~~l~~l~~~~g~tvi~-~h~-~~~i~~~~D~vll-L~~~G~~v~~G~~~~ 622 (846)
+|++|++||+..-.+. ..+..+...+..+ .+.|+.+|+ +|. ..++..+.+++.- +. .|.++..++++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHH-HTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 7899999999887664 6788899999998 677888888 664 4443223333332 34 677777777754
No 184
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.60 E-value=2e-05 Score=80.09 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=26.4
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
No 185
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=1.8e-05 Score=77.69 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=29.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV 487 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G 487 (846)
.+|++++|+|+||||||||++.|++++ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeC
Confidence 569999999999999999999999864 6666654
No 186
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.57 E-value=1.8e-05 Score=79.85 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=32.2
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN 486 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~ 486 (846)
.++|++++|+|+||||||||++.|++.++ ..|+|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 57899999999999999999999999875 67777553
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.56 E-value=3.6e-05 Score=77.76 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=37.5
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCC
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTY 502 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~ 502 (846)
-.+++|++++|+|+||||||||.+.|++..+ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH
Confidence 3567899999999999999999999999763 26788898876653
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.54 E-value=1.1e-05 Score=89.73 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=37.9
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEE
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLN 484 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~ 484 (846)
..+|+++++.+++|++++|.||||||||||+++|+|. .+|++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~--~~g~~~ 198 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL--CGGKAL 198 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH--HCCEEE
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh--cCCcEE
Confidence 4689999999999999999999999999999999985 356543
No 189
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.52 E-value=0.00024 Score=80.78 Aligned_cols=160 Identities=9% Similarity=0.005 Sum_probs=93.0
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVG 517 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~ 517 (846)
-.-|+.+.+-+++|+++.|.|++|+|||||..-++.... ..| ..+.|+.=+. +. .+.+.+. +.....+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE~---~~~~l~~R~~-~~~~~i~ 256 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLEM---PAAQLTLRMM-CSEARID 256 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSS---CHHHHHHHHH-HHHTTCC
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECCC---CHHHHHHHHH-HHHcCCC
Confidence 456888888899999999999999999999998886543 222 3344443221 11 1222211 1111111
Q ss_pred ------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-------------CCCcEEEEeCCCCCCCH----------
Q 048695 518 ------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-------------HCPSILLLEEPLSGVDT---------- 568 (846)
Q Consensus 518 ------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-------------~~P~iLlLDEPTsgLD~---------- 568 (846)
...+.++ .+++.+.++.+.-.++.-....+++. .+|+++++|..+.-.+.
T Consensus 257 ~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~ 335 (444)
T 2q6t_A 257 MNRVRLGQLTDRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQ 335 (444)
T ss_dssp TTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHH
T ss_pred HHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHH
Confidence 0122222 23444444444222211000111111 68999999998754332
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecChh-------------------hHHhhcCEEEEEcc
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPYA-------------------RTVPFFDLALILTK 610 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~~-------------------~i~~~~D~vllL~~ 610 (846)
....++.+.|+.++++.|.+||+ +|... .+.+.+|.+++|.+
T Consensus 336 ~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 336 QEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 12356788888997788999999 77321 35667999999973
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00017 Score=79.17 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=74.7
Q ss_pred ceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcCC--cc-c-cceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhh
Q 048695 441 PLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAER--IP-F-TGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALR 515 (846)
Q Consensus 441 ~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~~-~-~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr 515 (846)
.-|+.+- +-+++|+++.|.||+|+|||||+..++.. .+ . .| .|..+.|+.-+..+.+..+.+. ..++
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg----~~~~vlyi~~E~~~~~~~l~~~---~~~~- 180 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----PGGKIIFIDTENTFRPDRLRDI---ADRF- 180 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB----CCCEEEEEESSSCCCHHHHHHH---HHHT-
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC----CCCeEEEEECCCCCCHHHHHHH---HHHc-
Confidence 3455554 57999999999999999999999998874 33 1 11 1234566655432211122221 1111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcc------------cccccCCccCCCCcEEEEeCCCCCCCHH------------HH
Q 048695 516 VGKTVNAMRRHIHVELVLNQLGLLPY------------SNQLVGSLHYHCPSILLLEEPLSGVDTI------------GT 571 (846)
Q Consensus 516 ~~~~~~~~~~~~~v~~~l~~l~L~~~------------~~~~v~~lSg~~P~iLlLDEPTsgLD~~------------~~ 571 (846)
+.+.+ ++++.+-+.+. ..+.+.+. ..+++++++|+.++-.+.. ..
T Consensus 181 ---g~~~~-------~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~-~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l 249 (343)
T 1v5w_A 181 ---NVDHD-------AVLDNVLYARAYTSEHQMELLDYVAAKFHEE-AGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249 (343)
T ss_dssp ---TCCHH-------HHHHTEEEEECCSTTHHHHHHHHHHHHHHHS-CSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHH
T ss_pred ---CCCHH-------HHHhceeEeecCCHHHHHHHHHHHHHHHHhc-CCCccEEEEechHHHHHHHhcccccHHHHHHHH
Confidence 11111 11111110000 00000000 0468999999999865432 13
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
.++++.|++++++.|.+||+ +|...
T Consensus 250 ~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 250 AQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHHhCCEEEEEeecee
Confidence 56667777776778999999 77653
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.43 E-value=0.00017 Score=78.18 Aligned_cols=161 Identities=7% Similarity=-0.038 Sum_probs=87.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHH-Hh---
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFS-AA--- 513 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~-a~--- 513 (846)
+-.-|+++.+-+++|+++.|.|++|+|||||+..++...-..| ..+.|+.=+. +. .+.+.+.-. ..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g------~~vl~~slE~---s~~~l~~R~~~~~~~i~~ 124 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND------DVVNLHSLEM---GKKENIKRLIVTAGSINA 124 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT------CEEEEEESSS---CHHHHHHHHHHHHTTCCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CeEEEEECCC---CHHHHHHHHHHHHcCCCH
Confidence 3567888888899999999999999999999988875432222 3455554321 11 222222110 00
Q ss_pred --hhcCC-CCCHHHHHHHHHHHHHHcCCCcc--cccc---cCCcc--------CCCCc--EEEEeCCCCC------CCH-
Q 048695 514 --LRVGK-TVNAMRRHIHVELVLNQLGLLPY--SNQL---VGSLH--------YHCPS--ILLLEEPLSG------VDT- 568 (846)
Q Consensus 514 --lr~~~-~~~~~~~~~~v~~~l~~l~L~~~--~~~~---v~~lS--------g~~P~--iLlLDEPTsg------LD~- 568 (846)
++.+. ..+.++. .++.+..+.+.-.++ .+.. +.++. ..+++ ++++|--+.= -+.
T Consensus 125 ~~l~~~~~~l~~~~~-~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~ 203 (315)
T 3bh0_A 125 QKIKAARRDFASEDW-GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRT 203 (315)
T ss_dssp HHHHSCHHHHCSSCH-HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHH
T ss_pred HHHhcCCCCCCHHHH-HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHH
Confidence 11000 0111111 223333333211111 0110 11110 04677 9999965321 111
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEE-ecCh-------------------hhHHhhcCEEEEEc
Q 048695 569 IGTLTILNILSLCQIRSGHYCLS-NTPY-------------------ARTVPFFDLALILT 609 (846)
Q Consensus 569 ~~~~~i~~~l~~l~~~~g~tvi~-~h~~-------------------~~i~~~~D~vllL~ 609 (846)
.....+++.|++++++.|.+|++ +|-. ..+.+.+|-|+.|.
T Consensus 204 ~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~ 264 (315)
T 3bh0_A 204 NQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY 264 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence 33456778888887888999999 7743 13667899999998
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.43 E-value=0.00023 Score=77.39 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=73.8
Q ss_pred cceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcCCc--c-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhh
Q 048695 440 TPLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAERI--P-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALR 515 (846)
Q Consensus 440 ~~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~--~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr 515 (846)
-.-|+.+- +-+++|+++.|.||+|+|||||+..++... + ..|- .|..+.|+.-+..+.+..+.+.. .++.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~~~~~~~l~~~~---~~~g 166 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEGTFRWERIENMA---KALG 166 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSCCCHHHHHHHH---HHTT
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCCCCCHHHHHHHH---HHhC
Confidence 34455554 689999999999999999999999888642 3 1110 02345566544322111222221 1111
Q ss_pred c-----------CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccC-CCCcEEEEeCCCCCCCH--------H----HH
Q 048695 516 V-----------GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHY-HCPSILLLEEPLSGVDT--------I----GT 571 (846)
Q Consensus 516 ~-----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg-~~P~iLlLDEPTsgLD~--------~----~~ 571 (846)
. ....+.++..+.++.+.+. +.. .+|+++++|+.++-.+. . ..
T Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~ 233 (324)
T 2z43_A 167 LDIDNVMNNIYYIRAINTDHQIAIVDDLQEL-------------VSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKL 233 (324)
T ss_dssp CCHHHHHHTEEEEECCSHHHHHHHHHHHHHH-------------HHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHH
T ss_pred CCHHHHhccEEEEeCCCHHHHHHHHHHHHHH-------------HHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHH
Confidence 0 0000111111111111110 011 56899999999875432 1 13
Q ss_pred HHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 572 LTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 572 ~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
.++++.|++++++.|.+||+ +|...
T Consensus 234 ~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 234 NKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCEEEEEcceee
Confidence 45666777776677999999 77553
No 193
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00014 Score=80.22 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=33.1
Q ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE---ecChhh
Q 048695 552 HCPSILLLE-EPLSGVDTIGTLTILNILSLCQIRSGHYCLS---NTPYAR 597 (846)
Q Consensus 552 ~~P~iLlLD-EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~---~h~~~~ 597 (846)
.++-++++| +|++|+|......+++.+++. .. +.++++ -||...
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-FK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-TT-TSCEEEEECCTTTCC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHh-cC-CCCEEEEEECcccCC
Confidence 556688999 999999999988888888776 33 565555 377643
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=1.5e-05 Score=91.88 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=60.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC------------eEEEEEeccCc-CCCC-CH
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV------------LLLCYVEKLDA-HQTY-SV 504 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G------------~~igyv~Q~~~-~~~~-TV 504 (846)
+..+++++++.+++| +.|.||||+|||||+++|++... .|.+.++| +.+..++|... ..|. .+
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 346789999999999 89999999999999999999764 56777776 22445555432 3344 45
Q ss_pred HHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcC
Q 048695 505 SESIQFSAALRVG-KTVNAMRRHIHVELVLNQLG 537 (846)
Q Consensus 505 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~ 537 (846)
.|++......+.. .....++..+.+++++..++
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 5555321111110 00123444556777777653
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.40 E-value=8.2e-05 Score=81.35 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=33.8
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+-.-|+.+.+-+++|+++.|.|++|+|||||+.-++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345688888889999999999999999999999887654
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.39 E-value=4.4e-05 Score=77.10 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998754
No 197
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.39 E-value=3.2e-05 Score=90.15 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=33.7
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc-eEE-EcC
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG-SLN-GNV 487 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G-~I~-~~G 487 (846)
.+++|++++|+|+||||||||+++|+|++. .+| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 478999999999999999999999999974 665 674 665
No 198
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.38 E-value=0.00056 Score=75.65 Aligned_cols=123 Identities=9% Similarity=0.047 Sum_probs=69.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc------------ccceEEEcCeEEEEEeccCcC---CCC-CHHHHHHHH-HhhhcC
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP------------FTGSLNGNVLLLCYVEKLDAH---QTY-SVSESIQFS-AALRVG 517 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~------------~~G~I~~~G~~igyv~Q~~~~---~~~-TV~E~l~f~-a~lr~~ 517 (846)
.++|+|++|||||||+|.|+|... .+|.|.++|..+-.+ +...+ .|. .|.. ..-. ..++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-DT~G~i~~lp~~lve~-f~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFIRGIPPQIVDA-FFVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-ECCCBCSSCCGGGHHH-HHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-eCCCchhcCCHHHHHH-HHHHHHHHHhC
Confidence 399999999999999999999742 458899988443221 21111 122 2322 1100 011110
Q ss_pred ---------CCCC--HHHHHHHHHHHHHHcCCCccc----ccccCCccC------------------CCCcEEEEeCCCC
Q 048695 518 ---------KTVN--AMRRHIHVELVLNQLGLLPYS----NQLVGSLHY------------------HCPSILLLEEPLS 564 (846)
Q Consensus 518 ---------~~~~--~~~~~~~v~~~l~~l~L~~~~----~~~v~~lSg------------------~~P~iLlLDEPTs 564 (846)
.... ..+..+.+.++++.+++.+.. ..++..+++ .+|++ +|+|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 0111 123334567788888775432 122222221 11232 8999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 048695 565 GVDTIGTLTILNILSLCQI 583 (846)
Q Consensus 565 gLD~~~~~~i~~~l~~l~~ 583 (846)
++|......+.+.|.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999998887633
No 199
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.38 E-value=2.7e-05 Score=85.71 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+++..+.|.||+|+|||||++.+++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998764
No 200
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.37 E-value=0.00011 Score=70.64 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHc
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLA 474 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~La 474 (846)
+.++.+.+| +++|+|||||||||||++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999986
No 201
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=6.1e-05 Score=73.47 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.|++++|+||||||||||+++|++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999999875
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.28 E-value=0.00035 Score=78.83 Aligned_cols=117 Identities=10% Similarity=-0.070 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhh-hcCC--CCCHHHHHH
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAAL-RVGK--TVNAMRRHI 527 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~l-r~~~--~~~~~~~~~ 527 (846)
++.+++++||+|+||||++..|++.+. ..++|.+ +.-+. +.....|.+...+.. ..+. .....+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll-------v~~D~--~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~ 166 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL-------VAADV--YRPAAYDQLLQLGNQIGVQVYGEPNNQNPIE 166 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE-------EEECC--SCHHHHHHHHHHHHTTTCCEECCTTCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-------EecCc--cchhHHHHHHHHHHhcCCceeeccccCCHHH
Confidence 588999999999999999999998775 5555543 33321 111334444443321 1110 000001111
Q ss_pred HHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhhcCcEEEE
Q 048695 528 HVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPL-SG--VDTIGTLTILNILSLCQIRSGHYCLS 591 (846)
Q Consensus 528 ~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPT-sg--LD~~~~~~i~~~l~~l~~~~g~tvi~ 591 (846)
.+.+.++.+.. .+++++++|+|- .+ .|+....++.++++.+ ......+++
T Consensus 167 i~~~al~~a~~-------------~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVl 219 (433)
T 3kl4_A 167 IAKKGVDIFVK-------------NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVI 219 (433)
T ss_dssp HHHHHHHHTTT-------------TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEE
T ss_pred HHHHHHHHHHh-------------cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEE
Confidence 12222222211 478999999997 45 8888888887776666 444444455
No 203
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.26 E-value=5e-05 Score=78.53 Aligned_cols=137 Identities=14% Similarity=0.048 Sum_probs=72.1
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCc-cccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcCCCCCH----
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERI-PFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVGKTVNA---- 522 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~-~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~~~~~~---- 522 (846)
.+.+|+.+++.||+||||||++..+.... ...|. ++.++.+.+.+..... ++.+++.-............
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~ 147 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRF 147 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETT
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeech
Confidence 34679999999999999999888765432 12221 1233455555543333 55555542111110000000
Q ss_pred ------HH------HHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCcEE
Q 048695 523 ------MR------RHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS-GVDTIGTLTILNILSLCQIRSGHYC 589 (846)
Q Consensus 523 ------~~------~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tv 589 (846)
.. -..++.+.++. ++ .+-+++++||.-. ++|.......++.+.+. ...-+++
T Consensus 148 ~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l-------------~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~-~~~~~~i 212 (235)
T 3llm_A 148 ESILPRPHASIMFCTVGVLLRKLEA-GI-------------RGISHVIVDEIHERDINTDFLLVVLRDVVQA-YPEVRIV 212 (235)
T ss_dssp EEECCCSSSEEEEEEHHHHHHHHHH-CC-------------TTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-CTTSEEE
T ss_pred hhccCCCCCeEEEECHHHHHHHHHh-hh-------------cCCcEEEEECCccCCcchHHHHHHHHHHHhh-CCCCeEE
Confidence 00 00111111111 11 5678999999965 68877665555555544 2333456
Q ss_pred EE--ecChhhHHhhcCE
Q 048695 590 LS--NTPYARTVPFFDL 604 (846)
Q Consensus 590 i~--~h~~~~i~~~~D~ 604 (846)
++ |.+.+...+++++
T Consensus 213 l~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 213 LMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EEECSSCCHHHHHHTTS
T ss_pred EEecCCCHHHHHHHcCC
Confidence 66 8887776666653
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.00066 Score=74.84 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=30.9
Q ss_pred cceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 440 TPLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 440 ~~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-.-|+.+- +-+++|+++.|.|++|+|||||...++...
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566654 468999999999999999999998887543
No 205
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.21 E-value=1.6e-05 Score=85.83 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc--ccceEE-EcCeEEEEEeccC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP--FTGSLN-GNVLLLCYVEKLD 497 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~--~~G~I~-~~G~~igyv~Q~~ 497 (846)
+..++|+|++|+|||||+|.|.|... .++... -..+..|++.+++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 34799999999999999999999752 221110 0014567777654
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00085 Score=72.02 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.4
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345788899999999999999999999865
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.14 E-value=6.2e-05 Score=82.60 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=46.2
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEE
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNG 485 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~ 485 (846)
++.+++.+ .++ .+.+++++++..++|.+++|+|++|+|||||++.|+|... ..|++.+
T Consensus 31 ie~~~~~~-~~~-----~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRH-QAL-----STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHH-HHH-----HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchh-hhH-----HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 44555555 443 4678999999999999999999999999999999999874 5565543
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.00011 Score=72.34 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccc--eEEEcC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTG--SLNGNV 487 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G--~I~~~G 487 (846)
++|++++|+|++||||||+.+.|++.++..| .+.++|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 5799999999999999999999998764345 454443
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.14 E-value=0.0002 Score=87.44 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=28.4
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+.+++|+.+.|.||||+|||||+++|+|..+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999999999864
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.12 E-value=0.00015 Score=78.54 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVGKTVNAMRRHIHVEL 531 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~~~~~~~~~~~~v~~ 531 (846)
++..+.|.||+|+|||||++.|++.....| ..+.|+.-.+ ..+.+.- .+. ....+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~------~~~~~i~~~~------~~~~~~~--~~~----------~~~~~~ 91 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRG------YRVIYSSADD------FAQAMVE--HLK----------KGTINE 91 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTT------CCEEEEEHHH------HHHHHHH--HHH----------HTCHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCC------CEEEEEEHHH------HHHHHHH--HHH----------cCcHHH
Confidence 345789999999999999999998654211 2233332111 1111100 000 000011
Q ss_pred HHHHcCCCcccccccCCccCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCcEEEE--ecChh
Q 048695 532 VLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS-GVDTIGTLTILNILSLCQIRSGHYCLS--NTPYA 596 (846)
Q Consensus 532 ~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~ 596 (846)
..+. . .+|++|++||+-. ..|...+..+...+..+ .+.|..+|+ +++..
T Consensus 92 ~~~~---------~------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 92 FRNM---------Y------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHHH---------H------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGG
T ss_pred HHHH---------h------cCCCEEEEcCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEecCChH
Confidence 1110 0 3588999999865 23447788899999888 566666666 55554
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.03 E-value=0.00012 Score=80.74 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEeceeeeeeccCCCCCcceee--------------ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFS--------------YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~--------------~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.++||+. .|+ .++..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp-~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTP-LHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCE-ESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred Cceeccccc-cCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 467888988 675 2567888 899999999999999999999999999999865
No 212
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.97 E-value=0.00047 Score=69.76 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHc
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLA 474 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~La 474 (846)
+.++.+.+| +++|.|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345566665 99999999999999999884
No 213
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.92 E-value=0.00024 Score=73.38 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=28.5
Q ss_pred eeceeeEEe---CCeEEEEEcCCCCChhhHHHHHcCCccccceE
Q 048695 443 FSYVTCYAK---PQNMFALLGGSRTSKVTLLQCLAERIPFTGSL 483 (846)
Q Consensus 443 L~~vs~~v~---~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I 483 (846)
|.++|+.++ +|.+++|.|++||||||+++.|+..++..+++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 555666665 89999999999999999999999876443343
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.88 E-value=0.0044 Score=63.75 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999753
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.00016 Score=84.42 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=40.6
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNV 487 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G 487 (846)
+..+++++++.+ +|+.++|+||||+|||||+++|++... ..|+|.++|
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 345778888888 899999999999999999999999874 667776655
No 216
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00018 Score=73.47 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc---c-ccceEEE
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI---P-FTGSLNG 485 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~---~-~~G~I~~ 485 (846)
+.+++|+|||||||||+.+.|++.+ . ++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999864 2 6677655
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.83 E-value=0.00062 Score=75.45 Aligned_cols=44 Identities=7% Similarity=0.257 Sum_probs=33.4
Q ss_pred EEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHc
Q 048695 422 FVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLA 474 (846)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~La 474 (846)
+.++.|+...+ ..+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nF--------r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNF--------KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEcc--------ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45556665322 2346778888886 99999999999999999985
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.83 E-value=0.00033 Score=77.11 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN 486 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~ 486 (846)
+++.+++|+|++|||||||+|.|+|... .+|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 4678999999999999999999999764 66776553
No 219
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.76 E-value=0.0007 Score=71.48 Aligned_cols=44 Identities=7% Similarity=-0.104 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHHhhcCEE
Q 048695 562 PLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYARTVPFFDLA 605 (846)
Q Consensus 562 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~~~~D~v 605 (846)
|||+++.....++.+.+.+...+.+.+... .|..+++.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 888888888888888887774444444444 56566666665554
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.75 E-value=0.00032 Score=71.10 Aligned_cols=39 Identities=18% Similarity=0.001 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccc--eEEEcC
Q 048695 449 YAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTG--SLNGNV 487 (846)
Q Consensus 449 ~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G--~I~~~G 487 (846)
.+++|.+++|.|++||||||+.+.|++.++ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 357899999999999999999999999875 677 666654
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.70 E-value=0.00043 Score=69.74 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..+|.+++|+||||||||||.+.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999987654
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.00057 Score=68.44 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999997654
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.67 E-value=0.0042 Score=67.17 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=30.1
Q ss_pred cceeecee-eEEeCCeEEEEEcCCCCChhhHHHHHcC
Q 048695 440 TPLFSYVT-CYAKPQNMFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 440 ~~iL~~vs-~~v~~Ge~~al~GpsGaGKSTLL~~LaG 475 (846)
-.-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554 6899999999999999999999988874
No 224
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58 E-value=0.00076 Score=68.22 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=59.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCC-CHHHHHHHHHhhhcC---CCCCHHHHHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTY-SVSESIQFSAALRVG---KTVNAMRRHIHVE 530 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~-TV~E~l~f~a~lr~~---~~~~~~~~~~~v~ 530 (846)
.+.|.||+|+|||||++.++......+.+. ..+. ...+...+....... .........+.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGIT--------------ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR 112 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSC--------------SSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------------CCCCcccHHHHHHhccCCcceEEecCcccccHHHHH
Confidence 789999999999999999987543211110 0011 111111111000000 0000111223344
Q ss_pred HHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 531 LVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 531 ~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
++++.+.... ...+|.+|++||.-. ||......+.+.+.+. ..+..+|+ ++...
T Consensus 113 ~~~~~~~~~~---------~~~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 113 DLLDNVQYAP---------ARGRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHHSCCCSC---------SSSSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred HHHHHhhhch---------hcCCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 5555443221 115688999999765 7877777776666542 23455566 65544
No 225
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.57 E-value=0.0085 Score=63.59 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++.-+.|.||+|+|||||.++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999864
No 226
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.54 E-value=0.0027 Score=65.25 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--e---------cChhhHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--N---------TPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~---------h~~~~i~~~~D~vllL~ 609 (846)
.+|+++++||--. |+. .+++.++.+ ++.|.+||+ + ..+..+..++|+|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~----~~ve~l~~L-~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDD----RICEVANIL-AENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCT----HHHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcH----HHHHHHHHH-HhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 5689999999864 653 366677787 566999999 4 35678888999999876
No 227
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.53 E-value=0.0016 Score=73.79 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc-------------cccceEEEcCeE
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI-------------PFTGSLNGNVLL 489 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~-------------~~~G~I~~~G~~ 489 (846)
-.++|+|+||+|||||+|.|+|.. +..|.+.++|+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 368999999999999999999974 246888888854
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.00072 Score=66.84 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=28.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceE
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSL 483 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I 483 (846)
.++|.+++|+|++||||||+.+.|++.+. ..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999875 45554
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.52 E-value=0.0086 Score=68.96 Aligned_cols=160 Identities=13% Similarity=-0.005 Sum_probs=85.1
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHH-H-HHhhhcC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQ-F-SAALRVG 517 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~-f-~a~lr~~ 517 (846)
-.-|+.+.+-+++|+++.|.|++|+|||||+.-++-..-.. .|..+.|+.=+. +..+.+. + +.....+
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E~-----s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLEE-----SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESSS-----CHHHHHHHHHHHHTTSC
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEeccC-----CHHHHHHHHHHHHcCCC
Confidence 34577776679999999999999999999987776433211 023344543221 3333322 1 1111111
Q ss_pred CCC----CHH-HHHHHHHHHHHHc-CCCc-ccccccCCccC-------------CCCcEEEEeCCCCCC-------CH-H
Q 048695 518 KTV----NAM-RRHIHVELVLNQL-GLLP-YSNQLVGSLHY-------------HCPSILLLEEPLSGV-------DT-I 569 (846)
Q Consensus 518 ~~~----~~~-~~~~~v~~~l~~l-~L~~-~~~~~v~~lSg-------------~~P~iLlLDEPTsgL-------D~-~ 569 (846)
... ... -..+..+++.+.+ .-.+ ..+...++.+. .+|+++++|=-+. + +. .
T Consensus 299 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~ 377 (503)
T 1q57_A 299 LRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERK 377 (503)
T ss_dssp CTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHH
T ss_pred hhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHH
Confidence 100 000 0000111222222 1011 01111111111 6899999994432 2 21 2
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChh----------------------hHHhhcCEEEEEcc
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYA----------------------RTVPFFDLALILTK 610 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~----------------------~i~~~~D~vllL~~ 610 (846)
...++++.|++++++.|.+||+ +|... .+.+.+|-|+.|.+
T Consensus 378 ~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 378 MIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 3356788888887888999999 77542 25567999999974
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.00094 Score=66.12 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=26.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
No 231
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.00099 Score=66.94 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+++|+|+|||||||+.+.|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 232
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.49 E-value=0.0011 Score=72.99 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=31.9
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC--cc-ccceEE
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER--IP-FTGSLN 484 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~--~~-~~G~I~ 484 (846)
..+|+++++.++ .++|+|++|||||||++.|+|. .| .+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 468999999998 8999999999999999999995 45 556554
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.48 E-value=0.0013 Score=65.10 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=20.9
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35788999988888 5699999999999999999974
No 234
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.47 E-value=0.0055 Score=79.33 Aligned_cols=138 Identities=7% Similarity=0.027 Sum_probs=79.6
Q ss_pred eeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC-
Q 048695 442 LFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG- 517 (846)
Q Consensus 442 iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~- 517 (846)
-||.+. +-+++|+++.|.||+|+|||||+..++.... ..|. +.|+.-+.. ..+.. +.++...
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~-------VlyiS~Ees-----~~ql~--A~~lGvd~ 784 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAFIDAEHA-----LDPIY--ARKLGVDI 784 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------EEEECTTSC-----CCHHH--HHHTTCCG
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC-------eEEEeccch-----HHHHH--HHHcCCCh
Confidence 355554 3699999999999999999999999987543 3233 334432221 11111 1111100
Q ss_pred ------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC-H------------HHHHHHHHHH
Q 048695 518 ------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD-T------------IGTLTILNIL 578 (846)
Q Consensus 518 ------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD-~------------~~~~~i~~~l 578 (846)
...+.++..++++++.+. .+|+++++|+.++=.. . ...+++.+.+
T Consensus 785 ~~L~i~~~~~leei~~~l~~lv~~----------------~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~L 848 (1706)
T 3cmw_A 785 DNLLCSQPDTGEQALEICDALARS----------------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 848 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHH----------------TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHH
T ss_pred hheEEecCCcHHHHHHHHHHHHHc----------------cCCCEEEEechhhhccccccccccCccchhHHHHHHHHHH
Confidence 111222222333322211 5789999999887552 1 1223454444
Q ss_pred HH---HHhhcCcEEEE-ecChh----------------hHHhhcCEEEEEc
Q 048695 579 SL---CQIRSGHYCLS-NTPYA----------------RTVPFFDLALILT 609 (846)
Q Consensus 579 ~~---l~~~~g~tvi~-~h~~~----------------~i~~~~D~vllL~ 609 (846)
++ ++++.|.+||+ .|... .+.+.+|.++.|+
T Consensus 849 r~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~ 899 (1706)
T 3cmw_A 849 RKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 899 (1706)
T ss_dssp HHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEE
Confidence 44 45778999998 66322 3566788899997
No 235
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.46 E-value=0.0012 Score=64.37 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999863
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.44 E-value=0.0005 Score=75.98 Aligned_cols=46 Identities=17% Similarity=0.068 Sum_probs=35.9
Q ss_pred EEEEeceeeeeeccCCCCCcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 421 TFVFEGLTFSRYEEGSNESTPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+.++|++. .++ ++.+++++++.+ +|+|+||+|||||++.|.|...
T Consensus 17 ~v~~~~l~~-~~~-----~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPN-QVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHH-HHH-----THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchH-HhC-----CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 578888888 555 567889998877 9999999999999999988753
No 237
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.42 E-value=0.0067 Score=66.98 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=29.7
Q ss_pred cceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 440 TPLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 440 ~~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-.-||.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34555554 47899999999999999999999877643
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.38 E-value=0.00059 Score=68.23 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=32.3
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3568999999988886 689999999999999999974
No 239
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.33 E-value=0.00087 Score=72.01 Aligned_cols=41 Identities=20% Similarity=-0.079 Sum_probs=34.4
Q ss_pred ec-eeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEE
Q 048695 444 SY-VTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNG 485 (846)
Q Consensus 444 ~~-vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~ 485 (846)
++ +++..+ |++++++|++|+||||++..|++... ..|+|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 777776 99999999999999999999999875 5566654
No 240
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.33 E-value=0.00036 Score=76.42 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=34.5
Q ss_pred cceeeceeeEEeCCeE--EEEEcCCCCChhhHHHHHcCCc
Q 048695 440 TPLFSYVTCYAKPQNM--FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~--~al~GpsGaGKSTLL~~LaG~~ 477 (846)
..++++++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578889999999998 9999999999999999999875
No 241
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.30 E-value=0.003 Score=64.24 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987654
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.29 E-value=0.0011 Score=74.49 Aligned_cols=41 Identities=17% Similarity=-0.035 Sum_probs=35.4
Q ss_pred eceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceEEEc
Q 048695 444 SYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSLNGN 486 (846)
Q Consensus 444 ~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I~~~ 486 (846)
+++++. +|++++++|+||+||||++..|++.+. ..|+|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 678887 899999999999999999999999875 66777653
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.25 E-value=0.0014 Score=65.71 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcC
Q 048695 455 MFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG 475 (846)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 244
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0011 Score=69.31 Aligned_cols=44 Identities=16% Similarity=0.000 Sum_probs=32.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcC
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNV 487 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G 487 (846)
++++.+ ..+++.++.|+|+|||||||+.+.|+..++ .|.+.++|
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~ 65 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDG 65 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEec
Confidence 333333 457788999999999999999999998653 23455554
No 245
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.16 E-value=0.003 Score=67.42 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc-ccceE
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP-FTGSL 483 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I 483 (846)
...+.|.||+|+|||||.++|++... ..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 46899999999999999999999864 44433
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.16 E-value=0.0017 Score=64.03 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+++|+|+||||||||++.|.+.++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998764
No 247
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.00053 Score=74.83 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=35.9
Q ss_pred CcceeeceeeEEeCCeE--EEEEcCCCCChhhHHHHHcCCc
Q 048695 439 STPLFSYVTCYAKPQNM--FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~--~al~GpsGaGKSTLL~~LaG~~ 477 (846)
...+++.++..++.|++ +.+.||+|+|||||++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999 9999999999999999999976
No 248
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0025 Score=69.29 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLC 581 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l 581 (846)
.+++++++|| ...|++..+..+.+.+.+.
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETY 160 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHT
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhc
Confidence 4668999999 7889999888888888876
No 249
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.07 E-value=0.0093 Score=61.12 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhhcCcEEEE-ecChh----------hHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLS----GVDTIGTLTILNILSLCQIRSGHYCLS-NTPYA----------RTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTs----gLD~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~----------~i~~~~D~vllL~ 609 (846)
.+|+++++|--+. .-|.....+++..|++++++.|.++++ +|-.. .+...+|-++.|.
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 6788888885432 114455667888888887888999998 55321 2345789998886
No 250
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.07 E-value=0.013 Score=66.51 Aligned_cols=163 Identities=7% Similarity=-0.026 Sum_probs=88.1
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHH-HHH-----
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQ-FSA----- 512 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~-f~a----- 512 (846)
+-.-|+.+.+-+++|+++.|.|++|+|||||.--++...-.. |..+.|+.=+.. +..+.+.+. ...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSlEms--~~ql~~R~~~~~~~i~~~ 254 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLEMG--KKENIKRLIVTAGSINAQ 254 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECSSSC--TTHHHHHHHHHHSCCCHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEECCCC--HHHHHHHHHHHHcCCCHH
Confidence 345678887789999999999999999999988777543222 244566543311 112222221 100
Q ss_pred hhhcCCC-CCHHHHHHHHHHHHHHcCCCcc--cccc---cCCccC--------CCCc--EEEEeCCCC---CC---C-HH
Q 048695 513 ALRVGKT-VNAMRRHIHVELVLNQLGLLPY--SNQL---VGSLHY--------HCPS--ILLLEEPLS---GV---D-TI 569 (846)
Q Consensus 513 ~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~--~~~~---v~~lSg--------~~P~--iLlLDEPTs---gL---D-~~ 569 (846)
+++.+.. .+.++ ..++.+..+.+.-.++ .+.. +.++.. .+|+ ++++|--+. +- + ..
T Consensus 255 ~l~~g~~~l~~~~-~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~ 333 (444)
T 3bgw_A 255 KIKAARRDFASED-WGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTN 333 (444)
T ss_dssp HHHHTGGGTCCSC-HHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHH
T ss_pred HHhcccCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHH
Confidence 0110000 11111 1223333333311111 0110 001100 5788 999996532 11 1 12
Q ss_pred HHHHHHHHHHHHHhhcCcEEEE-ecChh-------------------hHHhhcCEEEEEcc
Q 048695 570 GTLTILNILSLCQIRSGHYCLS-NTPYA-------------------RTVPFFDLALILTK 610 (846)
Q Consensus 570 ~~~~i~~~l~~l~~~~g~tvi~-~h~~~-------------------~i~~~~D~vllL~~ 610 (846)
...++.+.|+.++++.|.+||+ +|-.. .+.+.+|-|+.|.+
T Consensus 334 ~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 334 QISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 3356778888887888999999 77331 26778899999873
No 251
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.03 E-value=0.012 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++.-+.|.||+|+|||||.++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998765
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.00 E-value=0.002 Score=64.47 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
..+++|.|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999764
No 253
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.98 E-value=0.0028 Score=61.05 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.94 E-value=0.0029 Score=62.19 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.82 E-value=0.0037 Score=60.94 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
|.++.|.|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0035 Score=60.47 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.71 E-value=0.0041 Score=60.98 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999963
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.69 E-value=0.01 Score=63.91 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.4
Q ss_pred eEEeCCeEEEEEcCCCCChhhHHHHH
Q 048695 448 CYAKPQNMFALLGGSRTSKVTLLQCL 473 (846)
Q Consensus 448 ~~v~~Ge~~al~GpsGaGKSTLL~~L 473 (846)
+-+++| ++-|.||+|+|||||+--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999995444
No 259
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.67 E-value=0.0041 Score=69.18 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=25.7
Q ss_pred eeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 447 TCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 447 s~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-+.++.|..++|+|+||+|||||+|+|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345577888999999999999999999987
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.67 E-value=0.0039 Score=64.20 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999743
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.61 E-value=0.0044 Score=60.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.56 E-value=0.0048 Score=63.78 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999543
No 263
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.55 E-value=0.0034 Score=65.28 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 344555555555 8899999999999999999865
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.54 E-value=0.0052 Score=60.51 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.51 E-value=0.0038 Score=62.24 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987544
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.51 E-value=0.0054 Score=60.21 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 267
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.47 E-value=0.027 Score=73.03 Aligned_cols=142 Identities=7% Similarity=0.016 Sum_probs=81.0
Q ss_pred cceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 440 TPLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 440 ~~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
-.-||.+- +-+++|+++.|.||+|+|||||.-.++...... |..+.|+.-+.... .++ +..+...
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~------G~~vlyis~E~s~~--~~~-----a~~lGvd 434 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALD--PIY-----ARKLGVD 434 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEECTTSCCC--HHH-----HHHTTCC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEccCchH--HHH-----HHHcCCC
Confidence 45677765 479999999999999999999988776543212 23455665443211 111 1111110
Q ss_pred -------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCCH-------------HHHHHHHHH
Q 048695 518 -------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVDT-------------IGTLTILNI 577 (846)
Q Consensus 518 -------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD~-------------~~~~~i~~~ 577 (846)
...+.++..+.++.+++ ..+|+++++|..++=... ...+.+.+.
T Consensus 435 ~~~L~i~~~~~~e~~l~~l~~lv~----------------~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~ 498 (1706)
T 3cmw_A 435 IDNLLCSQPDTGEQALEICDALAR----------------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 498 (1706)
T ss_dssp GGGCEEECCSSHHHHHHHHHHHHH----------------HTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHH
T ss_pred HHHeEEcCCCCHHHHHHHHHHHHH----------------hcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHH
Confidence 00111121111211111 167999999998876531 122334444
Q ss_pred HHHH---HhhcCcEEEE-ecCh----------------hhHHhhcCEEEEEcc
Q 048695 578 LSLC---QIRSGHYCLS-NTPY----------------ARTVPFFDLALILTK 610 (846)
Q Consensus 578 l~~l---~~~~g~tvi~-~h~~----------------~~i~~~~D~vllL~~ 610 (846)
++++ +++.|.+||+ +|-. ..+...+|-++.|.+
T Consensus 499 Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 499 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp HHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEe
Confidence 4444 5678999999 6642 235678999888873
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.44 E-value=0.019 Score=75.29 Aligned_cols=142 Identities=8% Similarity=0.045 Sum_probs=81.1
Q ss_pred cceeecee--eEEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhcC
Q 048695 440 TPLFSYVT--CYAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRVG 517 (846)
Q Consensus 440 ~~iL~~vs--~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~~ 517 (846)
..-|+.+- +-+++|+++.|.||+|+|||||...++......| ..+.|+.-+.... .++ +.++..+
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G------~~vlyis~E~s~~--~~~-----a~~lGvd 434 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG------KTCAFIDAEHALD--PIY-----ARKLGVD 434 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT------CCEEEECTTSCCC--HHH-----HHHTTCC
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC------CeEEEEEcCCCHH--HHH-----HHHcCCC
Confidence 44566665 3799999999999999999999888775432222 2344544332111 111 1111110
Q ss_pred -------CCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCCCCC-H------------HHHHHHHHH
Q 048695 518 -------KTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLSGVD-T------------IGTLTILNI 577 (846)
Q Consensus 518 -------~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTsgLD-~------------~~~~~i~~~ 577 (846)
...+.++..+.++.+++. .+|+++++|.-++-.. + ..++.+.+.
T Consensus 435 ~~~L~I~~~~~~e~il~~~~~lv~~----------------~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~ 498 (2050)
T 3cmu_A 435 IDNLLCSQPDTGEQALEICDALARS----------------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 498 (2050)
T ss_dssp TTTCEEECCSSHHHHHHHHHHHHHH----------------TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHH
T ss_pred HHHeEEeCCCCHHHHHHHHHHHHHh----------------cCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHH
Confidence 011112222222221111 5789999998876542 1 123345555
Q ss_pred HHHH---HhhcCcEEEE-ecChh----------------hHHhhcCEEEEEcc
Q 048695 578 LSLC---QIRSGHYCLS-NTPYA----------------RTVPFFDLALILTK 610 (846)
Q Consensus 578 l~~l---~~~~g~tvi~-~h~~~----------------~i~~~~D~vllL~~ 610 (846)
|+++ +++.|.+||+ .|-.. .+...+|.++.|.|
T Consensus 499 Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 499 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp HHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEe
Confidence 5555 5678999999 66432 25677899999984
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.41 E-value=0.0064 Score=64.83 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGN 486 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~ 486 (846)
..|.++.|.||||||||||.+.|+...+ .|.+.++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is 65 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVID 65 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEe
Confidence 4578999999999999999999986543 2444444
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.28 E-value=0.0061 Score=63.70 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++++|+||||||||||-+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999764
No 271
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.27 E-value=0.067 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.|.||.|+|||||++.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.24 E-value=0.0075 Score=59.12 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.0084 Score=60.66 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcC
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG 475 (846)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 274
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.18 E-value=0.0073 Score=59.06 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999843
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.15 E-value=0.0085 Score=57.53 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHHHH
Q 048695 455 MFALLGGSRTSKVTLLQCL 473 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~L 473 (846)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.11 E-value=0.0088 Score=59.48 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.07 E-value=0.0052 Score=60.25 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998764
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.05 E-value=0.0096 Score=59.59 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 279
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.05 E-value=0.016 Score=63.24 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999997653
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.04 E-value=0.042 Score=60.21 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998754
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.01 Score=59.28 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCccccceE
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPFTGSL 483 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I 483 (846)
+|.+++|.|++||||||+.+.|+..+...|++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 47789999999999999999999866544433
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.02 E-value=0.0089 Score=59.26 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
No 283
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.93 E-value=0.038 Score=56.07 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--e---------cChhhHHhhcCEEEEEc
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--N---------TPYARTVPFFDLALILT 609 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~---------h~~~~i~~~~D~vllL~ 609 (846)
+.+++++||--- +|+. +++.++++ ++.|+.||+ . -.+..+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l-~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVL-ANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHH-HHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHH-hhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 478999999865 6543 33778888 667999999 4 47888999999999886
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.90 E-value=0.01 Score=58.49 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998543
No 285
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.89 E-value=0.0055 Score=61.52 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.85 E-value=0.011 Score=59.09 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998654
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.81 E-value=0.012 Score=57.09 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhhHHHHHcC
Q 048695 454 NMFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG 475 (846)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.80 E-value=0.011 Score=58.59 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhhHHHHHcCC
Q 048695 454 NMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.77 E-value=0.01 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 290
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.013 Score=58.70 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-e----------cChhhHHhhcCEEEEEc
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-N----------TPYARTVPFFDLALILT 609 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~----------h~~~~i~~~~D~vllL~ 609 (846)
+.+++++||--- +|+. +++.++++ ++.|..||+ - -.+.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l-~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKI-AESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHH-HHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHH-HhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 368999999433 6533 36678888 566999999 4 45688889999998776
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.62 E-value=0.0063 Score=60.26 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998643
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.61 E-value=0.014 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 293
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.59 E-value=0.078 Score=59.78 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCccc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPF 479 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~ 479 (846)
++.+++++|++|+||||+...|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976543
No 294
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.51 E-value=0.021 Score=61.49 Aligned_cols=37 Identities=19% Similarity=0.002 Sum_probs=31.9
Q ss_pred CcceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 439 STPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 439 ~~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 356788877777 7899999999999999999999875
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.50 E-value=0.016 Score=56.86 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.47 E-value=0.016 Score=55.02 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999999865
No 297
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.32 E-value=0.17 Score=47.52 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=29.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ecCh
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NTPY 595 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~ 595 (846)
+..+|++||.- .|+...+..+.+.+.+. .+.+..+|+ +.+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~-~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKA-ERCRVRVIASCSYAA 117 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHH-TTTTCEEEEEEEECT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhC-CCCCEEEEEecCCCH
Confidence 45689999975 57888888888888775 444555666 4443
No 298
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.29 E-value=0.018 Score=58.21 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998643
No 299
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.25 E-value=0.019 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999874
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.23 E-value=0.015 Score=56.60 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.016 Score=56.89 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 302
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.15 E-value=0.015 Score=64.69 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=36.7
Q ss_pred CCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhhcCcEEEE-ecChhhHH
Q 048695 552 HCPSILLLEEPLSGVD---TIGTLTILNILSLCQIRSGHYCLS-NTPYARTV 599 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~~i~ 599 (846)
.+|.++++||-=.=++ +..+..+.+.+++. ++.|..+++ ||.++++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence 5688999999877663 66777788888887 788888888 88876553
No 303
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.15 E-value=0.021 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.14 E-value=0.019 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.02 Score=54.50 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 306
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.12 E-value=0.02 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+++|.|++||||||+.+.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 307
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.09 E-value=0.021 Score=58.23 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999998543
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.07 E-value=0.017 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 309
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.99 E-value=0.018 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 310
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.97 E-value=0.022 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.92 E-value=0.021 Score=57.82 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998643
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.91 E-value=0.022 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 313
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.021 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.--++|+|++|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 314
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.90 E-value=0.022 Score=60.23 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.89 E-value=0.023 Score=56.47 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999754
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.89 E-value=0.019 Score=54.06 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998864
No 317
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.86 E-value=0.02 Score=54.15 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 318
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.86 E-value=0.02 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 319
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.85 E-value=0.023 Score=55.41 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999874
No 320
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.81 E-value=0.028 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998753
No 321
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.80 E-value=0.023 Score=58.90 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
-++|+|.+|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999753
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.78 E-value=0.027 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.77 E-value=0.027 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.76 E-value=0.021 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 325
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.71 E-value=0.025 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.71 E-value=0.022 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998864
No 327
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.71 E-value=0.035 Score=54.37 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999866654
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.70 E-value=0.022 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 329
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.70 E-value=0.043 Score=55.06 Aligned_cols=37 Identities=16% Similarity=-0.071 Sum_probs=29.3
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
...+++.-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 44566655444 57889999999999999999998764
No 330
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.70 E-value=0.022 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.69 E-value=0.026 Score=56.69 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 332
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.65 E-value=0.023 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 333
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.64 E-value=0.045 Score=71.91 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=74.3
Q ss_pred ceeeceee--EEeCCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCCCCCHHHHHHHHHhhhc--
Q 048695 441 PLFSYVTC--YAKPQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQTYSVSESIQFSAALRV-- 516 (846)
Q Consensus 441 ~iL~~vs~--~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~~~TV~E~l~f~a~lr~-- 516 (846)
.-|+.+.+ -+++|+++.|-|++|+|||||+..++......| ..+.|+.-+.... +.. +.++..
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g------~~VlyiS~Ees~~-----ql~--A~rlG~~~ 784 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG------KTCAFIDAEHALD-----PIY--ARKLGVDI 784 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT------CCEEEECTTSCCC-----HHH--HHHTTCCT
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC------CcEEEEECCCcHH-----HHH--HHHcCCCc
Confidence 44777775 799999999999999999999999887543221 2234443332111 111 111110
Q ss_pred -----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCccCCCCcEEEEeCCCC----------------CCCHHHHHHHH
Q 048695 517 -----GKTVNAMRRHIHVELVLNQLGLLPYSNQLVGSLHYHCPSILLLEEPLS----------------GVDTIGTLTIL 575 (846)
Q Consensus 517 -----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v~~lSg~~P~iLlLDEPTs----------------gLD~~~~~~i~ 575 (846)
-...+.++..+.++++.+. .+|++++.|+-++ +|-.+...+++
T Consensus 785 ~~l~i~~~~~i~~i~~~~r~l~~~----------------~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~il 848 (2050)
T 3cmu_A 785 DNLLCSQPDTGEQALEICDALARS----------------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 848 (2050)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHH----------------TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHH
T ss_pred cceEEecCCCHHHHHHHHHHHhhc----------------cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHH
Confidence 0112222333333222211 5689999999332 11122335566
Q ss_pred HHHHHHHhhcCcEEEE-ecChhhH
Q 048695 576 NILSLCQIRSGHYCLS-NTPYART 598 (846)
Q Consensus 576 ~~l~~l~~~~g~tvi~-~h~~~~i 598 (846)
+.|++++++.+.+||+ .|-+...
T Consensus 849 r~Lk~lAke~~v~VI~l~Qv~r~~ 872 (2050)
T 3cmu_A 849 RKLAGNLKQSNTLLIFINQIRMKI 872 (2050)
T ss_dssp HHHHHHHHTTTCEEEEEECCEECT
T ss_pred HHHHHHHHHhCCEEEEeccccccc
Confidence 6888887778999999 8866543
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.63 E-value=0.028 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.62 E-value=0.023 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 336
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.61 E-value=0.023 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.60 E-value=0.028 Score=59.13 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998864
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.58 E-value=0.023 Score=54.57 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998763
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.58 E-value=0.022 Score=60.80 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCccccceEEEcCeEEEEEeccCcCC
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPFTGSLNGNVLLLCYVEKLDAHQ 500 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G~I~~~G~~igyv~Q~~~~~ 500 (846)
++-+++|.||+||||||+.+.|+..+...| ..+.++..|+.+-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~------~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREG------VKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHT------CCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcC------CCeeEeecchhhc
Confidence 345899999999999999999986543111 2356677776553
No 340
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.58 E-value=0.025 Score=54.47 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.57 E-value=0.032 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.50 E-value=0.032 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998754
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.43 E-value=0.028 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 344
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.42 E-value=0.031 Score=55.41 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999874
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.42 E-value=0.031 Score=56.20 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+||+||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.41 E-value=0.034 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.36 E-value=0.027 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.36 E-value=0.033 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.33 E-value=0.031 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999998754
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.29 E-value=0.028 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 351
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.28 E-value=0.028 Score=54.51 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.27 E-value=0.028 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 353
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.27 E-value=0.042 Score=60.40 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 354
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.26 E-value=0.035 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+.++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998643
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.22 E-value=0.029 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 356
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.22 E-value=0.029 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.20 E-value=0.03 Score=53.01 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHHHHcCC
Q 048695 456 FALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~ 476 (846)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 358
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.20 E-value=0.044 Score=59.55 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
++.+++|+||+|||||||-..|+..++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998763
No 359
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.19 E-value=0.036 Score=59.42 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+.| .++|+|.+|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 58999999999999999999964
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.18 E-value=0.03 Score=53.69 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.15 E-value=0.039 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.--++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999754
No 362
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.11 E-value=0.035 Score=57.97 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.08 E-value=0.034 Score=57.13 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.4
Q ss_pred EeCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 450 AKPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 450 v~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..+|.++++.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999987764
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.04 E-value=0.035 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
-++|+|++|+|||||++.+.|..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999998764
No 365
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.03 E-value=0.038 Score=54.02 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999865
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.03 E-value=0.032 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.02 E-value=0.032 Score=53.84 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 37999999999999999998753
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.00 E-value=0.037 Score=57.45 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 369
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.99 E-value=0.042 Score=54.01 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.97 E-value=0.041 Score=54.94 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999853
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.96 E-value=0.033 Score=54.32 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.95 E-value=0.034 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.92 E-value=0.041 Score=57.09 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-+++|.|++||||||+-+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998744
No 374
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.91 E-value=0.34 Score=49.65 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE--ec---------ChhhHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS--NT---------PYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~h---------~~~~i~~~~D~vllL~ 609 (846)
.+.+++++||----.| +.++++.+ ++.|+.||+ .. .+.++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l-~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAM-ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHH-HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 3468999999876543 66777777 678999999 55 5788889999999886
No 375
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.88 E-value=0.27 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++-.=+.|-||+|+|||||.++||+..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344458899999999999999999875
No 376
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.87 E-value=0.035 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.85 E-value=0.048 Score=55.36 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccccc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPFTG 481 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G 481 (846)
-+|.++++.|++||||||+.+.|+..+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987664333
No 378
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.84 E-value=0.043 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 379
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.84 E-value=0.035 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998763
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.80 E-value=0.036 Score=55.55 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 381
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.74 E-value=0.037 Score=54.60 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998653
No 382
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.73 E-value=0.026 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.70 E-value=0.045 Score=55.33 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998644
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.70 E-value=0.038 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.038 Score=54.21 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 386
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.69 E-value=0.038 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.67 E-value=0.038 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 388
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.67 E-value=0.048 Score=55.29 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|.|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.65 E-value=0.046 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.038 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 391
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.63 E-value=0.05 Score=53.30 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 392
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.62 E-value=0.039 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 393
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.60 E-value=0.045 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
No 394
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.56 E-value=0.047 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 395
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.55 E-value=0.053 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998765
No 396
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.55 E-value=0.048 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 397
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.54 E-value=0.049 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.53 E-value=0.039 Score=60.90 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhhHHHHHcCC
Q 048695 456 FALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~ 476 (846)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.53 E-value=0.05 Score=57.57 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChhhHHHHHc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLA 474 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~La 474 (846)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 400
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.51 E-value=0.048 Score=58.18 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.51 E-value=0.042 Score=53.15 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.51 E-value=0.042 Score=53.05 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.49 E-value=0.05 Score=55.31 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.48 E-value=0.046 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.48 E-value=0.054 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+|.++++.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988764
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.044 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 407
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.43 E-value=0.051 Score=56.69 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998765
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.43 E-value=0.043 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47999999999999999999864
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.41 E-value=0.043 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHHHHcC
Q 048695 455 MFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG 475 (846)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 410
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.34 E-value=0.045 Score=53.47 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.34 E-value=0.045 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999843
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.32 E-value=0.057 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+.+++|+||+|||||||...|+...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987653
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.31 E-value=0.059 Score=54.87 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPF 479 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~ 479 (846)
++|.++++.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999876643
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.045 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.29 E-value=0.045 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 416
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.27 E-value=0.06 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.27 E-value=0.059 Score=60.46 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.+++.|+|++||||||+.+.|+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998654
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.21 E-value=0.058 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999854
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.20 E-value=0.048 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.047 Score=54.46 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999998765
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.19 E-value=0.059 Score=57.17 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhhHHHHHcC
Q 048695 454 NMFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG 475 (846)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.19 E-value=0.048 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 423
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.19 E-value=0.042 Score=55.03 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999753
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.18 E-value=0.063 Score=54.54 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCccccc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIPFTG 481 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~~~G 481 (846)
+|.++++.|++||||||+.+.|+..+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999988765333
No 425
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.18 E-value=0.074 Score=65.30 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.-+.|.||+|+|||||++.|++..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999875
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.14 E-value=0.058 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.10 E-value=0.05 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.06 E-value=0.044 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=9.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.06 E-value=0.07 Score=54.62 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCccc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIPF 479 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~~ 479 (846)
.+|.++++.|++||||||+.+.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35889999999999999999999876643
No 430
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.051 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.051 Score=53.48 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.04 E-value=0.051 Score=53.28 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998763
No 433
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.04 E-value=0.057 Score=57.04 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.03 E-value=0.066 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998653
No 435
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.00 E-value=0.052 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.98 E-value=0.052 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.98 E-value=0.062 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.95 E-value=0.064 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 439
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.91 E-value=0.053 Score=53.97 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++++|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 440
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.91 E-value=0.065 Score=52.81 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.|..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999864
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.90 E-value=0.073 Score=54.65 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.85 E-value=0.061 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 443
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.85 E-value=0.063 Score=55.99 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999865
No 444
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.84 E-value=0.073 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++..++.|+||.||||+|.-+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999998643
No 445
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.84 E-value=0.066 Score=58.27 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+++|+||+|||||||-+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 446
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.83 E-value=0.098 Score=51.25 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=27.4
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+..++..-.. -.|.-+.|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4455554444 45888999999999999999888653
No 447
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.76 E-value=0.057 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998863
No 448
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.72 E-value=0.045 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.68 E-value=0.08 Score=59.97 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.8
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCcc-ccceE
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERIP-FTGSL 483 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~~-~~G~I 483 (846)
.++++.+ ..+-+|+..+|+|+||+|||||++.|++... ..|.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 3456666 4566799999999999999999999987653 34444
No 450
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.65 E-value=0.069 Score=55.93 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.64 E-value=0.06 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999987653
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.63 E-value=0.06 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998653
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.60 E-value=0.063 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998764
No 454
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.52 E-value=0.086 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999763
No 455
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.50 E-value=0.77 Score=48.90 Aligned_cols=42 Identities=5% Similarity=-0.007 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCcEEEE-ecChh
Q 048695 552 HCPSILLLEEPLSGVD-TIGTLTILNILSLCQIRSGHYCLS-NTPYA 596 (846)
Q Consensus 552 ~~P~iLlLDEPTsgLD-~~~~~~i~~~l~~l~~~~g~tvi~-~h~~~ 596 (846)
.+++++++||.- .|. ......+.+.+.+. . .+..+|+ +.+..
T Consensus 104 ~~~~vliiDEi~-~l~~~~~~~~L~~~le~~-~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFD-RSGLAESQRHLRSFMEAY-S-SNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCC-CGGGHHHHHHHHHHHHHH-G-GGCEEEEEESSGG
T ss_pred CCCeEEEEECCc-ccCcHHHHHHHHHHHHhC-C-CCcEEEEEeCCcc
Confidence 368899999984 344 56666677777665 2 3455555 55543
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.48 E-value=0.064 Score=53.11 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 457
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.40 E-value=0.043 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=4.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999886
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.35 E-value=0.075 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.32 E-value=0.083 Score=57.08 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+++|+||+|||||||-+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.08 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 461
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.16 E-value=0.048 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 462
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.15 E-value=0.072 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.05 E-value=0.099 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.95 E-value=0.1 Score=58.06 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..+++|+||+|||||||.+.|+...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999986553
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.86 E-value=0.097 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
No 466
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.65 E-value=0.094 Score=59.46 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||+|.|.|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999863
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.65 E-value=0.085 Score=52.31 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998653
No 468
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.088 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 469
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.46 E-value=0.13 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcC
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAE 475 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG 475 (846)
-|+.+-+-+.+|.++.|.||+|+|||||...++.
T Consensus 112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444447789999999999999999999999875
No 470
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.44 E-value=0.11 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+..-+.|.||+|+|||||.+.|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999998754
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.33 E-value=0.095 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999888753
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.23 E-value=0.047 Score=56.83 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=23.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+......+| +.|.||+|+|||||.++|++..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 333444455 7799999999999999999754
No 473
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.18 E-value=0.048 Score=66.43 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.6
Q ss_pred eeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 446 VTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 446 vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++.+.+|+.+.|.||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45667899999999999999999999999875
No 474
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.14 E-value=0.12 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++.|+||.||||+|.-+.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998653
No 475
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.12 E-value=0.1 Score=51.92 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.97 E-value=0.11 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 477
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.85 E-value=0.15 Score=50.38 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=34.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCcEEEE-ec----------ChhhHHhhcCEEEEEc
Q 048695 553 CPSILLLEEPLSGVDTIGTLTILNILSLCQIRSGHYCLS-NT----------PYARTVPFFDLALILT 609 (846)
Q Consensus 553 ~P~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~-~h----------~~~~i~~~~D~vllL~ 609 (846)
+++++++||-=- +|+ .+++.|+++ .+.|..|++ -+ ....+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l-~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDL-LDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHH-HHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHH-HHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999643 443 366778877 566888888 33 2234556688887665
No 478
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.62 E-value=0.06 Score=53.86 Aligned_cols=56 Identities=11% Similarity=0.021 Sum_probs=43.1
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHhhcCcEEEE--ecChhhHHhhcCEEEEEc
Q 048695 552 HCPSILLLEEPLSG--VDTIGTLTILNILSLCQIRSGHYCLS--NTPYARTVPFFDLALILT 609 (846)
Q Consensus 552 ~~P~iLlLDEPTsg--LD~~~~~~i~~~l~~l~~~~g~tvi~--~h~~~~i~~~~D~vllL~ 609 (846)
.+.++|+|||.+.. ++-....++++.|.+ +-.+..||+ -.+.+++.+.+|-|--|.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence 56789999999763 344445668888875 445677777 677889999999999987
No 479
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.53 E-value=0.13 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.37 E-value=0.18 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999975
No 481
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.89 E-value=0.071 Score=52.77 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHHHHcCC
Q 048695 455 MFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~ 476 (846)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999998754
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.90 E-value=0.18 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCC
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998765
No 483
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.74 E-value=0.13 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHHH-HcCC
Q 048695 455 MFALLGGSRTSKVTLLQC-LAER 476 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~-LaG~ 476 (846)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5444
No 484
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.70 E-value=0.17 Score=55.36 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987653
No 485
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.68 E-value=0.19 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+++.-+.|.||+|+|||||.+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455789999999999999999987653
No 486
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.51 E-value=0.18 Score=47.48 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
+.+.-+.|.||+|+|||+|.+.|+...+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455689999999999999999987654
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.40 E-value=0.18 Score=56.80 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|.+|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 488
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.33 E-value=0.2 Score=58.57 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=26.1
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 442 LFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 442 iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 555542 334578999999999999999999974
No 489
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.29 E-value=0.14 Score=58.12 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 452 PQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 452 ~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
+|--++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4445999999999999999999885
No 490
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=88.29 E-value=0.18 Score=56.08 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhhHHHHHcCCc
Q 048695 456 FALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 456 ~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++|+|.+|+|||||+|.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
No 491
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.10 E-value=0.39 Score=51.46 Aligned_cols=36 Identities=17% Similarity=-0.057 Sum_probs=27.8
Q ss_pred cceeeceeeEEeCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 440 TPLFSYVTCYAKPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 440 ~~iL~~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
...+++.-. .-.|.-+.|.|+||+|||||.-.|..+
T Consensus 135 ~~~~H~~~v-~~~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 135 VAQIHGVLL-EVFGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp CEEEEEEEE-EETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred cceeEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456777444 446888999999999999998887643
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.98 E-value=0.23 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
++-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987553
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.96 E-value=0.2 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
-+||+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997643
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.95 E-value=0.16 Score=57.11 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhhHHHHHcCCcc
Q 048695 454 NMFALLGGSRTSKVTLLQCLAERIP 478 (846)
Q Consensus 454 e~~al~GpsGaGKSTLL~~LaG~~~ 478 (846)
.+++++|++|+||||+...|++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 495
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.91 E-value=0.22 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCC
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAER 476 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~ 476 (846)
++..-+.|.||+|+|||||.+.|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.80 E-value=0.23 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 451 KPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 451 ~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
++..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999754
No 497
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=87.71 E-value=0.21 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhhHHHHHcCCc
Q 048695 455 MFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.++|+|..|+|||||+|.|.|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999863
No 498
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=87.67 E-value=0.31 Score=53.80 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChhhHHHHHcCCcc------------ccceEEEcCeEEEEE
Q 048695 455 MFALLGGSRTSKVTLLQCLAERIP------------FTGSLNGNVLLLCYV 493 (846)
Q Consensus 455 ~~al~GpsGaGKSTLL~~LaG~~~------------~~G~I~~~G~~igyv 493 (846)
-+||+|..-+|||||+|.|+|..+ ..|.+.++|.++-++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~ 124 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQML 124 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEE
Confidence 589999999999999999999642 347888888555444
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=87.65 E-value=0.26 Score=53.68 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=25.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 445 YVTCYAKPQNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 445 ~vs~~v~~Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
.+.+.++----++|+|.++||||||++.|++..
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 344444444458999999999999999999764
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.40 E-value=0.24 Score=52.58 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhhHHHHHcCCc
Q 048695 453 QNMFALLGGSRTSKVTLLQCLAERI 477 (846)
Q Consensus 453 Ge~~al~GpsGaGKSTLL~~LaG~~ 477 (846)
...+.|.||+|+|||+|.++|+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457788999999999999999754
Done!