BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048697
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana
GN=AGL62 PE=1 SV=1
Length = 299
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 85/142 (59%), Gaps = 11/142 (7%)
Query: 3 AKKTKGRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KK+KGRQKIEM+ +TFSKRRS ++K ASEL TL G+E+AIVVFS K ++
Sbjct: 2 VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61
Query: 54 FGHPSVEAVANRFLGMNQLP--NDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEK 111
FGHP+V++V +RF+ N LP N L R + +LN ++ QL+ EK++
Sbjct: 62 FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121
Query: 112 ILTQMRRGKETQPRMWETPVDE 133
L ++R + WE PV+E
Sbjct: 122 ELKKIREKTKALGNWWEDPVEE 143
>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana
GN=AGL61 PE=1 SV=1
Length = 264
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 13/150 (8%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GRQKI M+ +TFSKRR+ ++K ASEL TL G+EI I+VFS + KP++FGHPS
Sbjct: 63 GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122
Query: 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRR 118
VE+V +R++ N + S + ELN Q + +++EEK++ + + +MR+
Sbjct: 123 VESVLDRYVSRNNM--SLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRK 180
Query: 119 G--KETQPRMWETPVDEHNLQEQLQMDSAF 146
+ + WE PV+E N+ + +M A
Sbjct: 181 ESVRRSMINWWEKPVEEMNMVQLQEMKYAL 210
>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana
GN=AGL21 PE=1 SV=1
Length = 228
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 28/112 (25%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF----LGMNQ 71
+TFSKRR + K A EL L +E+ +++FS +GK Y F S+++V +R+ + Q
Sbjct: 19 VTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQ 78
Query: 72 LPN----------------DNIHSLVVGHRQ--------VRINELNQQHNEL 99
L N +H+L HRQ + +NELN N++
Sbjct: 79 LLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQI 130
>sp|Q9C633|AGL97_ARATH Agamous-like MADS-box protein AGL97 OS=Arabidopsis thaliana
GN=AGL97 PE=1 SV=1
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIV---VFSQSGKP-YTFGHPSVEAVANRFLGMNQ 71
++FSKRR +Y ASEL L+ +EIAI+ V S S Y+FGH SV+ V FL NQ
Sbjct: 21 VSFSKRRKGLYSKASELCLLSDAEIAIIATPVSSNSNAAFYSFGHSSVDNVVAAFLA-NQ 79
Query: 72 LPND 75
P D
Sbjct: 80 RPCD 83
>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica
GN=MADS47 PE=1 SV=2
Length = 246
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR ++K A EL L +E+ +VVFS +GK + F S+E + +R+
Sbjct: 38 VTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRY 88
>sp|Q24535|SRF_DROME Serum response factor homolog OS=Drosophila melanogaster GN=bs PE=1
SV=2
Length = 449
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KKTKGR KI+M TFSKR++ I K A EL TLTG+++ ++V S++G YT
Sbjct: 161 GKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYT 220
Query: 54 F 54
F
Sbjct: 221 F 221
>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15
PE=3 SV=1
Length = 264
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TFSKRR+ + K A EL L +E+A++VFS+SGK + F S
Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS 61
Query: 59 VEAVANRFLGMNQLPND 75
++ R+ G Q+ +D
Sbjct: 62 MKKTLLRY-GNYQISSD 77
>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana
GN=AGL19 PE=1 SV=1
Length = 219
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF------LGM 69
+TFSKRR+ + K A EL L +E+A+V+FS K Y F S+ A R+ +G
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGN 78
Query: 70 NQLPNDN--------------IHSLVVGHRQ--------VRINELNQQHNELRRQL 103
N NDN I L + R+ I EL Q N+L R L
Sbjct: 79 NHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSL 134
>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana
GN=AGL6 PE=1 SV=2
Length = 252
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
KI +TFSKRR+ + K A EL L +E+A+++FS GK Y FG +E+ R+
Sbjct: 14 KINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERY 69
>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana
GN=AGL18 PE=2 SV=1
Length = 256
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 10 QKIEMI----ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANR 65
+KIE I +TFSKRR+ + K A EL L +E+A+++FS +GK Y F +E + +R
Sbjct: 9 KKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILSR 68
Query: 66 F 66
+
Sbjct: 69 Y 69
>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana
GN=AGL16 PE=1 SV=1
Length = 240
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR+ + K A EL L +E+ +++FS +G+ Y F S+++V R+
Sbjct: 19 VTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSSSMKSVIERY 69
>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica
GN=MADS23 PE=2 SV=1
Length = 159
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TFSKRRS ++K A EL L +E+ ++VFS + + Y F S
Sbjct: 2 GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61
Query: 59 VEAVANRF 66
++++ R+
Sbjct: 62 MKSIIERY 69
>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica
GN=MADS27 PE=2 SV=2
Length = 240
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR+ I+K A EL L +E+ +++FS +G+ Y + S+++V +R+
Sbjct: 19 VTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRY 69
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TF KRR+ + K A EL L +E+A++VFS G+ Y + + S
Sbjct: 2 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61
Query: 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQL 103
V++ R+ N +D +S V +V Q+ ++LR+Q+
Sbjct: 62 VKSTVERYKKAN---SDTSNSGTVA--EVNAQHYQQESSKLRQQI 101
>sp|Q54RY6|SRFB_DICDI Serum response factor homolog B OS=Dictyostelium discoideum GN=srfB
PE=3 SV=1
Length = 467
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 5 KTKGRQKI--EMI-------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFG 55
K GR+KI E I ITFSKR+S I K A EL TLTG+++ ++V S++G YTF
Sbjct: 34 KKSGRRKINIEFIGDKSRRHITFSKRKSGIMKKAYELSTLTGTQVLLIVASETGHVYTFA 93
Query: 56 HPSVEAVANR 65
P ++ + +
Sbjct: 94 TPKLQPLITK 103
>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1
PE=2 SV=1
Length = 248
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TF KRR+ + K A EL L +E+A+VVFS G+ Y + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS 77
Query: 59 VEAVANRF 66
V+A R+
Sbjct: 78 VKATIERY 85
>sp|Q9JM73|SRF_MOUSE Serum response factor OS=Mus musculus GN=Srf PE=1 SV=1
Length = 504
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KKT+GR KI+M TFSKR++ I K A EL TLTG+++ ++V S++G YT
Sbjct: 133 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 192
Query: 54 F 54
F
Sbjct: 193 F 193
>sp|P23790|SRF_XENLA Serum response factor OS=Xenopus laevis GN=srf PE=2 SV=1
Length = 448
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KKT+GR KI+M TFSKR++ I K A EL TLTG+++ ++V S++G YT
Sbjct: 92 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 151
Query: 54 F 54
F
Sbjct: 152 F 152
>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1
PE=2 SV=1
Length = 256
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFG-HPSVEAVANRF 66
KI +TFSKRR+ ++K A E+ L +E+A+VVFS GK + + P +E + R+
Sbjct: 14 KINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDPCMEKILERY 70
>sp|Q90718|SRF_CHICK Serum response factor (Fragment) OS=Gallus gallus GN=SRF PE=2
SV=1
Length = 375
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KKT+GR KI+M TFSKR++ I K A EL TLTG+++ ++V S++G YT
Sbjct: 4 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 63
Query: 54 F 54
F
Sbjct: 64 F 64
>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica
GN=MADS6 PE=1 SV=1
Length = 250
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
KI +TFSKRR+ + K A EL L +E+A+++FS GK Y FG + R+
Sbjct: 14 KINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERY 69
>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2
SV=1
Length = 248
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TF KRR+ + K A EL L +E+A++VFS G+ Y + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 77
Query: 59 VEAVANRF 66
V+A R+
Sbjct: 78 VKATIERY 85
>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica
GN=MADS58 PE=2 SV=1
Length = 272
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 3 AKKTKGRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
A+K R KIE+ +TF KRRS + K A EL L +E+A+VVFS G+ Y
Sbjct: 39 AEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYE 98
Query: 54 FGHPSVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQH 96
+ + SV+ R+ N +D ++ V E+N QH
Sbjct: 99 YSNNSVKETIERYKKAN---SDTSNASTVA-------EINAQH 131
>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1
SV=1
Length = 242
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TF KRR+ + K A EL L +E+A++VFS G+ Y + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 77
Query: 59 VEAVANRF 66
V+A R+
Sbjct: 78 VKATIERY 85
>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana
GN=AGL15 PE=1 SV=1
Length = 268
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TFSKRRS + K A EL L +E+A++VFS+SGK + +
Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG 61
Query: 59 VEAVANRF 66
++ +R+
Sbjct: 62 MKQTLSRY 69
>sp|Q38840|AGL17_ARATH Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana
GN=AGL17 PE=2 SV=2
Length = 227
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR + K A EL L +E+ +++FS + K Y F SV++ RF
Sbjct: 19 VTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERF 69
>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica
GN=MADS57 PE=2 SV=2
Length = 241
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR+ + K A EL L +E+ +VVFS +G+ Y F +++ V +R+
Sbjct: 19 VTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRY 69
>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica
GN=MADS18 PE=1 SV=1
Length = 249
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTF-GHPSVEAVANRF 66
KI +TFSKRR+ + K A E+ L +++A++VFS GK Y F H S+E + R+
Sbjct: 14 KINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70
>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica
GN=MADS18 PE=2 SV=2
Length = 249
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTF-GHPSVEAVANRF 66
KI +TFSKRR+ + K A E+ L +++A++VFS GK Y F H S+E + R+
Sbjct: 14 KINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70
>sp|Q38837|AGL13_ARATH Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana
GN=AGL13 PE=2 SV=2
Length = 244
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGM- 69
KI +TFSKR+S + K A EL L +E+++++FS GK Y F + V R+
Sbjct: 14 KITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCK 73
Query: 70 -NQLPNDNI 77
N L ND +
Sbjct: 74 DNLLDNDTL 82
>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica
GN=MADS22 PE=2 SV=1
Length = 228
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMNQLPND 75
+TFSKRR ++K A EL L +++A++VFS +GK F S+ + +++
Sbjct: 19 VTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY--------- 69
Query: 76 NIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121
N HS +G + +LN +H++ L+E+ + + + RG+E
Sbjct: 70 NTHSNNLGKAEQPSLDLNLEHSKY-AHLNEQLAEASLRLRQMRGEE 114
>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica
GN=MADS17 PE=1 SV=2
Length = 249
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
KI +TFSKRR+ + K A EL L +E+A+++FS GK Y FG + ++
Sbjct: 14 KINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKY 69
>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica
GN=MADS25 PE=2 SV=2
Length = 227
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR + K A EL L +++ ++VFS +G+ Y F S++++ R+
Sbjct: 19 VTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERY 69
>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1
Length = 220
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMNQLPND 75
+TFSKRR I+K A EL L +++A+++FS +GK + F + + R+ L
Sbjct: 19 VTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSRMRDILGRY----SLHAS 74
Query: 76 NIHSLV 81
NI+ L+
Sbjct: 75 NINKLM 80
>sp|P11831|SRF_HUMAN Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1
Length = 508
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYT 53
KKT+GR KI+M TFSKR++ I K A EL TLTG+++ ++V S++G YT
Sbjct: 137 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 196
Query: 54 FG 55
F
Sbjct: 197 FA 198
>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica
GN=MADS50 PE=2 SV=1
Length = 230
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66
+TFSKRR+ + K A EL L +E+A++VFS GK Y F S + R+
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERY 69
>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana
GN=AGL14 PE=1 SV=2
Length = 221
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS-----VEAVANRF--LG 68
+TFSKRR+ + K A EL L +E+A+++FS GK Y F S VE R LG
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLG 78
Query: 69 MNQLPNDN 76
N NDN
Sbjct: 79 SNHKRNDN 86
>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica
GN=MADS2 PE=2 SV=1
Length = 209
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHP 57
GR KIE+ +TFSKRRS I K A E+ L +E+ +V+FS +GK Y + P
Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60
>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
Length = 240
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANR 65
+TFSKRR ++K A EL L +++A+++FS +GK + F S++ V R
Sbjct: 19 VTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLER 68
>sp|Q655V4|MAD30_ORYSJ MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica
GN=MADS30 PE=2 SV=1
Length = 221
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
G+ KIEM +TFSKRR+ K A+EL L +++ +VVFS GK + F P
Sbjct: 2 GQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPP 61
Query: 59 V--------EAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEE 106
V + R + + D+ +V+ ++R NE++Q LRRQ E+
Sbjct: 62 VILMELFHRYEITTRNTRLQETNRDD-EQMVMEITRLR-NEIDQLEASLRRQTGED 115
>sp|P0DI14|AP1_BRARP Floral homeotic protein APETALA 1 OS=Brassica rapa subsp.
pekinensis GN=AP1 PE=3 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSV-EAVANRF 66
KI +TFSKRR+ ++K A E+ L +E+A+VVFS GK + + S E + R+
Sbjct: 14 KINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERY 70
>sp|Q8GTF4|AP1C_BRAOB Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
botrytis GN=AP1C PE=2 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSV-EAVANRF 66
KI +TFSKRR+ ++K A E+ L +E+A+VVFS GK + + S E + R+
Sbjct: 14 KINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERY 70
>sp|B4YPV4|AP1C_BRAOA Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
alboglabra GN=AP1C PE=3 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSV-EAVANRF 66
KI +TFSKRR+ ++K A E+ L +E+A+VVFS GK + + S E + R+
Sbjct: 14 KINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERY 70
>sp|Q96355|1AP1_BRAOT Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var.
italica GN=1AP1 PE=2 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 KIEMIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSV-EAVANRF 66
KI +TFSKRR+ ++K A E+ L +E+A+VVFS GK + + S E + R+
Sbjct: 14 KINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERY 70
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2
SV=1
Length = 252
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 KKTKGRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTF 54
++ GR KIE+ +TF KRR+ + K A EL L +E+A++VFS G+ Y +
Sbjct: 14 QRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73
Query: 55 GHPSVEAVANRF 66
+ SV+ R+
Sbjct: 74 SNNSVKGTIERY 85
>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica
GN=MADS16 PE=1 SV=2
Length = 224
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 11/70 (15%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +T+SKRR+ I K A EL L +++AI++FS +GK + F PS
Sbjct: 2 GRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPS 61
Query: 59 --VEAVANRF 66
++ + +R+
Sbjct: 62 TDIKGIFDRY 71
>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
Length = 242
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 8 GRQKIEMI---------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS 58
GR KIE+ +TF KRR+ + K A EL L +E+A++VFS G+ Y + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNS 77
Query: 59 VEAVANRF 66
V+ R+
Sbjct: 78 VKGTIERY 85
>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1
Length = 265
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 16 ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMNQLPND 75
+TFSKRR ++K A EL L +++A+++FS +GK + + S++ + R L +
Sbjct: 19 VTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILER----RDLHSK 74
Query: 76 NIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQ 123
N+ L ++++ E N ++ L +++ E+ + L QM RG+E Q
Sbjct: 75 NLEKLDQPSLELQLVE-NSNYSRLSKEISEKSHR---LRQM-RGEELQ 117
>sp|Q54TY7|SRFA_DICDI Serum response factor homolog A OS=Dictyostelium discoideum GN=srfA
PE=1 SV=1
Length = 418
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 9/75 (12%)
Query: 5 KTKGRQKI--EMI-------ITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFG 55
K GR+KI E I ITFSKR++ I K A EL TLTG+++ ++V S++G YTF
Sbjct: 65 KKAGRRKIKIEFIDDKSRRHITFSKRKAGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 124
Query: 56 HPSVEAVANRFLGMN 70
++ + R G N
Sbjct: 125 TAKLQPLITRPEGKN 139
>sp|P78926|MAP1_SCHPO Pheromone receptor transcription activator OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=map1 PE=4 SV=1
Length = 398
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 17 TFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAV 62
TF+KR++ I+K A+EL LTGSE+ ++V S++G +TF P +E V
Sbjct: 37 TFTKRKAGIFKKANELALLTGSEVMVLVVSETGLVHTFSTPKLENV 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,276,886
Number of Sequences: 539616
Number of extensions: 2433613
Number of successful extensions: 11828
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 11453
Number of HSP's gapped (non-prelim): 439
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)