Query 048697
Match_columns 168
No_of_seqs 116 out of 1327
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 2.8E-32 6.1E-37 209.1 7.0 145 7-157 1-168 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.6E-31 7.8E-36 174.7 2.9 63 8-70 1-72 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 2.5E-28 5.5E-33 163.4 5.3 67 8-74 1-77 (83)
4 smart00432 MADS MADS domain. 99.9 3.9E-27 8.4E-32 147.2 4.0 50 8-57 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 1.5E-26 3.2E-31 144.7 3.1 50 8-57 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.5E-26 1.4E-30 137.4 1.5 42 15-56 10-51 (51)
7 KOG0015 Regulator of arginine 99.7 3.9E-18 8.4E-23 135.4 3.4 70 3-72 58-145 (338)
8 COG5068 ARG80 Regulator of arg 99.2 5.2E-12 1.1E-16 104.7 2.5 59 6-64 80-147 (412)
9 PF01486 K-box: K-box region; 98.3 2.3E-06 5E-11 59.0 6.2 62 91-158 9-70 (100)
10 PF10491 Nrf1_DNA-bind: NLS-bi 88.2 0.98 2.1E-05 35.0 4.5 50 19-68 30-87 (214)
11 PF10584 Proteasome_A_N: Prote 84.0 0.37 8E-06 24.1 0.2 12 41-52 4-15 (23)
12 PF06698 DUF1192: Protein of u 79.5 2.8 6E-05 26.0 3.0 32 127-158 14-45 (59)
13 PF07106 TBPIP: Tat binding pr 78.6 17 0.00038 26.9 7.8 61 87-157 72-132 (169)
14 PRK04098 sec-independent trans 75.4 6.3 0.00014 29.4 4.4 34 31-68 8-41 (158)
15 PF06729 CENP-R: Kinetochore c 67.0 46 0.00099 24.1 7.1 49 87-136 59-107 (139)
16 PRK01919 tatB sec-independent 62.2 12 0.00026 28.1 3.6 10 40-49 15-24 (169)
17 PF08432 Vfa1: AAA-ATPase Vps4 60.5 28 0.0006 26.4 5.4 14 36-49 11-24 (182)
18 PF09151 DUF1936: Domain of un 58.4 6.4 0.00014 21.1 1.1 28 31-58 2-31 (36)
19 PF04977 DivIC: Septum formati 58.1 35 0.00075 21.4 4.9 32 88-119 18-49 (80)
20 COG1938 Archaeal enzymes of AT 56.8 47 0.001 26.6 6.3 62 37-114 169-231 (244)
21 PLN03230 acetyl-coenzyme A car 56.6 1.1E+02 0.0023 26.7 8.7 25 50-74 38-72 (431)
22 TIGR01916 F420_cofE F420-0:gam 55.7 14 0.0003 29.6 3.1 29 30-58 133-161 (243)
23 KOG4603 TBP-1 interacting prot 52.2 88 0.0019 23.8 6.7 68 89-166 81-151 (201)
24 TIGR00012 L29 ribosomal protei 51.6 19 0.00041 21.7 2.6 30 131-160 2-31 (55)
25 PRK00736 hypothetical protein; 51.1 61 0.0013 20.4 5.0 38 84-121 16-53 (68)
26 PF15372 DUF4600: Domain of un 50.8 92 0.002 22.4 7.7 25 131-155 48-72 (129)
27 PRK04325 hypothetical protein; 48.0 70 0.0015 20.5 5.0 38 84-121 20-57 (74)
28 PRK00295 hypothetical protein; 47.7 70 0.0015 20.2 5.0 38 84-121 16-53 (68)
29 PRK04406 hypothetical protein; 47.6 75 0.0016 20.5 6.1 38 84-121 22-59 (75)
30 KOG0184 20S proteasome, regula 47.2 9.4 0.0002 30.1 1.0 21 33-53 3-23 (254)
31 PF09941 DUF2173: Uncharacteri 46.9 15 0.00032 25.7 1.8 38 29-67 3-43 (108)
32 PF04102 SlyX: SlyX; InterPro 46.9 56 0.0012 20.6 4.4 38 84-121 15-52 (69)
33 PRK00846 hypothetical protein; 46.8 72 0.0016 20.8 4.9 38 84-121 24-61 (77)
34 PRK09822 lipopolysaccharide co 46.7 11 0.00024 30.0 1.3 39 17-56 119-160 (269)
35 KOG0432 Valyl-tRNA synthetase 46.4 40 0.00087 31.9 4.9 55 95-150 931-985 (995)
36 cd02980 TRX_Fd_family Thioredo 46.0 21 0.00047 22.3 2.4 30 36-66 47-77 (77)
37 PRK00888 ftsB cell division pr 45.9 67 0.0015 22.1 5.0 32 88-119 28-59 (105)
38 COG0139 HisI Phosphoribosyl-AM 45.7 6.6 0.00014 27.5 -0.1 37 15-51 50-96 (111)
39 PF04873 EIN3: Ethylene insens 45.5 7 0.00015 33.0 0.0 38 23-60 54-92 (354)
40 TIGR01005 eps_transp_fam exopo 45.2 1.2E+02 0.0026 28.0 7.9 53 89-148 196-248 (754)
41 KOG0861 SNARE protein YKT6, sy 45.2 1.3E+02 0.0027 23.1 6.6 12 57-68 121-132 (198)
42 PLN03229 acetyl-coenzyme A car 44.9 1.7E+02 0.0037 27.3 8.6 34 39-72 49-91 (762)
43 PF04521 Viral_P18: ssRNA posi 42.9 1.2E+02 0.0026 21.5 6.1 21 16-36 5-25 (120)
44 KOG0183 20S proteasome, regula 42.9 14 0.00029 29.1 1.2 15 38-52 4-18 (249)
45 COG3411 Ferredoxin [Energy pro 42.6 31 0.00068 21.7 2.6 30 41-70 18-48 (64)
46 PF15079 DUF4546: Domain of un 41.0 1.1E+02 0.0024 23.1 5.7 56 88-158 48-103 (205)
47 TIGR03007 pepcterm_ChnLen poly 40.9 1.5E+02 0.0033 25.7 7.6 48 59-113 140-187 (498)
48 PF09403 FadA: Adhesion protei 40.6 1.2E+02 0.0026 21.7 5.7 17 53-69 16-32 (126)
49 COG4831 Roadblock/LC7 domain [ 40.4 25 0.00053 24.1 2.0 30 27-57 3-32 (109)
50 COG4917 EutP Ethanolamine util 40.3 25 0.00055 25.5 2.2 24 31-54 58-81 (148)
51 PF08557 Lipid_DES: Sphingolip 40.0 20 0.00044 20.2 1.3 21 19-39 16-36 (39)
52 PF05812 Herpes_BLRF2: Herpesv 40.0 1.3E+02 0.0029 21.2 7.2 57 95-153 4-60 (118)
53 KOG4316 Uncharacterized conser 39.8 14 0.0003 27.2 0.8 41 30-70 43-94 (172)
54 PHA02592 52 DNA topisomerase I 39.7 2.4E+02 0.0052 24.6 8.5 56 8-68 264-325 (439)
55 PF11172 DUF2959: Protein of u 39.7 39 0.00085 26.2 3.3 82 59-151 44-133 (201)
56 smart00415 HSF heat shock fact 39.1 33 0.00071 23.4 2.6 42 27-70 7-51 (105)
57 PRK02195 V-type ATP synthase s 38.9 1.2E+02 0.0025 23.4 5.9 53 50-115 107-161 (201)
58 PF04678 DUF607: Protein of un 38.7 1.4E+02 0.0031 22.4 6.3 53 54-115 32-85 (180)
59 PRK02119 hypothetical protein; 38.0 1.1E+02 0.0023 19.6 6.1 38 84-121 20-57 (73)
60 PRK00306 50S ribosomal protein 37.2 33 0.00071 21.4 2.2 28 130-157 5-32 (66)
61 PF06156 DUF972: Protein of un 36.9 1.1E+02 0.0025 21.1 5.0 27 88-114 16-42 (107)
62 PF10623 PilI: Plasmid conjuga 36.4 45 0.00097 21.9 2.7 31 39-69 8-41 (83)
63 PF04019 DUF359: Protein of un 36.4 13 0.00027 26.5 0.1 17 42-58 79-95 (121)
64 PRK02793 phi X174 lysis protei 36.3 1.1E+02 0.0025 19.4 6.1 38 84-121 19-56 (72)
65 PF13252 DUF4043: Protein of u 36.2 18 0.00039 30.3 1.1 28 29-56 271-298 (341)
66 PRK13293 F420-0--gamma-glutamy 36.0 45 0.00097 26.7 3.2 28 30-57 134-161 (245)
67 PHA00327 minor capsid protein 35.7 1.4E+02 0.0031 22.4 5.6 26 89-114 110-135 (187)
68 PF04945 YHS: YHS domain; Int 35.6 28 0.0006 20.0 1.5 24 35-58 5-31 (47)
69 PF14009 DUF4228: Domain of un 35.5 39 0.00085 24.5 2.7 34 36-69 12-46 (181)
70 PF07058 Myosin_HC-like: Myosi 35.0 80 0.0017 26.2 4.5 29 91-119 4-32 (351)
71 PHA03162 hypothetical protein; 34.6 1.8E+02 0.0039 21.1 7.3 56 96-153 15-70 (135)
72 PRK13169 DNA replication intia 34.5 1.3E+02 0.0028 21.0 5.0 29 87-115 15-43 (110)
73 cd03063 TRX_Fd_FDH_beta TRX-li 34.5 42 0.0009 22.6 2.5 35 35-69 44-80 (92)
74 PRK10803 tol-pal system protei 34.4 42 0.0009 27.0 2.9 38 30-68 10-47 (263)
75 PF00383 dCMP_cyt_deam_1: Cyti 34.1 40 0.00087 22.2 2.4 31 24-54 6-40 (102)
76 PF03584 Herpes_ICP4_N: Herpes 33.9 1.2E+02 0.0026 22.8 4.9 29 43-71 17-47 (173)
77 PF07960 CBP4: CBP4; InterPro 33.5 1.8E+02 0.004 20.9 6.1 28 39-68 15-42 (128)
78 KOG4637 Adaptor for phosphoino 33.5 31 0.00066 29.5 2.0 39 30-70 367-412 (464)
79 PF01996 F420_ligase: F420-0:G 33.2 16 0.00035 28.7 0.3 29 30-58 141-169 (228)
80 smart00787 Spc7 Spc7 kinetocho 32.7 2.1E+02 0.0046 23.6 6.8 29 129-157 196-224 (312)
81 PF06005 DUF904: Protein of un 32.3 1.4E+02 0.003 19.1 7.3 31 88-118 19-49 (72)
82 cd00032 CASc Caspase, interleu 32.2 1.1E+02 0.0023 24.0 4.9 48 21-68 55-109 (243)
83 cd03064 TRX_Fd_NuoE TRX-like [ 32.0 37 0.0008 21.6 1.8 28 36-66 52-80 (80)
84 PF11460 DUF3007: Protein of u 32.0 69 0.0015 22.2 3.2 19 130-148 86-104 (104)
85 PLN03194 putative disease resi 31.8 33 0.00072 26.3 1.8 31 35-65 78-108 (187)
86 PF13758 Prefoldin_3: Prefoldi 31.5 1.2E+02 0.0026 20.8 4.3 34 89-122 7-44 (99)
87 COG3022 Uncharacterized protei 31.4 1.7E+02 0.0036 23.6 5.7 31 116-147 77-107 (253)
88 KOG4302 Microtubule-associated 30.9 3.8E+02 0.0083 24.8 8.5 26 125-150 148-173 (660)
89 COG5570 Uncharacterized small 30.9 1.3E+02 0.0027 18.2 4.9 45 107-156 11-55 (57)
90 TIGR02231 conserved hypothetic 30.7 2.3E+02 0.0049 25.0 7.1 68 87-154 71-144 (525)
91 PHA03155 hypothetical protein; 30.4 2E+02 0.0043 20.3 7.2 52 96-153 10-61 (115)
92 PF04568 IATP: Mitochondrial A 30.2 1.3E+02 0.0028 20.6 4.4 10 96-105 74-83 (100)
93 COG0216 PrfA Protein chain rel 30.1 1.1E+02 0.0025 25.7 4.7 94 58-157 8-103 (363)
94 PRK01770 sec-independent trans 29.8 67 0.0014 24.3 3.1 36 30-69 7-42 (171)
95 PF07676 PD40: WD40-like Beta 29.8 37 0.0008 18.2 1.4 18 39-56 10-27 (39)
96 PRK04863 mukB cell division pr 29.4 1.6E+02 0.0036 29.8 6.5 27 130-156 431-457 (1486)
97 COG5000 NtrY Signal transducti 29.4 38 0.00082 30.9 2.0 22 33-54 374-395 (712)
98 cd00187 TOP4c DNA Topoisomeras 29.0 1.8E+02 0.0038 25.4 6.0 26 41-69 302-327 (445)
99 cd00427 Ribosomal_L29_HIP Ribo 28.9 52 0.0011 19.8 2.0 27 131-157 3-29 (57)
100 PF13540 RCC1_2: Regulator of 28.5 21 0.00045 18.5 0.1 24 34-58 4-27 (30)
101 PF06020 Roughex: Drosophila r 28.2 27 0.00059 28.6 0.8 16 33-48 183-198 (334)
102 TIGR03138 QueF 7-cyano-7-deaza 28.2 62 0.0013 26.3 2.8 21 29-49 109-129 (275)
103 PF07701 HNOBA: Heme NO bindin 28.1 85 0.0018 24.5 3.6 23 43-65 122-145 (219)
104 TIGR03017 EpsF chain length de 27.6 3.5E+02 0.0075 23.0 7.6 50 59-115 150-199 (444)
105 PF15119 APOC4: Apolipoprotein 27.2 38 0.00083 22.7 1.3 19 19-37 76-96 (99)
106 PF04697 Pinin_SDK_N: pinin/SD 26.8 1.3E+02 0.0027 21.8 3.9 28 96-123 5-32 (134)
107 COG4575 ElaB Uncharacterized c 26.5 2.2E+02 0.0048 19.7 6.0 27 132-158 32-58 (104)
108 COG1382 GimC Prefoldin, chaper 26.4 1.1E+02 0.0023 21.7 3.5 35 87-121 77-111 (119)
109 KOG3896 Dynactin, subunit p62 26.2 1.5E+02 0.0032 25.2 4.7 57 106-167 151-207 (449)
110 PF00831 Ribosomal_L29: Riboso 26.2 26 0.00056 21.3 0.3 26 132-157 5-30 (58)
111 PF12795 MscS_porin: Mechanose 26.1 3.2E+02 0.0069 21.3 8.5 69 89-157 33-101 (240)
112 KOG4797 Transcriptional regula 26.0 2.4E+02 0.0051 19.8 5.7 45 93-147 66-110 (123)
113 PF11232 Med25: Mediator compl 25.9 44 0.00095 24.8 1.5 20 34-53 109-128 (152)
114 PRK09039 hypothetical protein; 25.9 1.8E+02 0.0039 24.3 5.4 16 136-151 189-204 (343)
115 PRK13294 F420-0--gamma-glutamy 25.9 68 0.0015 28.0 2.9 26 30-55 134-159 (448)
116 PF10224 DUF2205: Predicted co 25.7 2E+02 0.0043 18.9 4.9 28 89-116 25-52 (80)
117 cd01372 KISc_KIF4 Kinesin moto 25.6 50 0.0011 27.2 2.0 23 33-55 68-92 (341)
118 PF08796 DUF1797: Protein of u 25.5 49 0.0011 21.0 1.5 19 36-54 24-42 (67)
119 COG3883 Uncharacterized protei 25.4 2.5E+02 0.0054 22.8 5.8 16 138-153 81-96 (265)
120 PF06657 Cep57_MT_bd: Centroso 25.3 2E+02 0.0043 18.7 6.9 60 92-161 15-75 (79)
121 KOG4252 GTP-binding protein [S 25.3 41 0.00088 26.0 1.3 28 35-68 90-117 (246)
122 PF06574 FAD_syn: FAD syntheta 25.2 89 0.0019 22.9 3.1 26 23-48 22-47 (157)
123 PF08386 Abhydrolase_4: TAP-li 25.1 1.2E+02 0.0026 20.3 3.5 32 41-72 64-96 (103)
124 PF01920 Prefoldin_2: Prefoldi 25.0 2.1E+02 0.0045 18.8 8.0 32 89-120 71-102 (106)
125 PF08172 CASP_C: CASP C termin 25.0 1.8E+02 0.004 23.2 5.0 33 88-120 101-133 (248)
126 PRK00182 tatB sec-independent 25.0 20 0.00044 26.8 -0.4 35 30-68 8-42 (160)
127 PF10498 IFT57: Intra-flagella 24.8 2.9E+02 0.0062 23.4 6.4 60 88-155 260-319 (359)
128 PF15458 NTR2: Nineteen comple 24.5 2.8E+02 0.006 22.1 6.0 54 52-117 199-252 (254)
129 KOG1618 Predicted phosphatase 24.4 32 0.00069 28.9 0.6 41 27-67 87-139 (389)
130 CHL00154 rpl29 ribosomal prote 24.1 57 0.0012 20.6 1.6 28 130-157 8-35 (67)
131 PF11629 Mst1_SARAH: C termina 24.0 85 0.0018 18.6 2.2 21 130-150 4-24 (49)
132 PF04120 Iron_permease: Low af 23.9 2.8E+02 0.0061 20.0 7.1 28 130-157 91-118 (132)
133 COG1438 ArgR Arginine represso 23.8 42 0.00092 24.8 1.1 18 30-47 118-135 (150)
134 PRK14549 50S ribosomal protein 23.5 63 0.0014 20.5 1.7 28 130-157 8-35 (69)
135 PF14916 CCDC92: Coiled-coil d 23.4 1.3E+02 0.0028 18.6 3.1 28 87-114 10-41 (60)
136 PRK00461 rpmC 50S ribosomal pr 23.0 73 0.0016 21.3 2.0 18 97-114 11-28 (87)
137 PF03938 OmpH: Outer membrane 23.0 2.9E+02 0.0062 19.7 7.9 71 57-153 22-92 (158)
138 TIGR02209 ftsL_broad cell divi 23.0 2.1E+02 0.0046 18.1 5.0 30 89-118 26-55 (85)
139 cd00468 HIT_like HIT family: H 22.9 1.2E+02 0.0027 18.9 3.2 29 130-158 31-59 (86)
140 PF13188 PAS_8: PAS domain; PD 22.9 75 0.0016 18.7 2.0 30 33-64 5-34 (64)
141 PF07820 TraC: TraC-like prote 22.4 1.6E+02 0.0035 19.9 3.6 19 89-107 4-22 (92)
142 PF14257 DUF4349: Domain of un 22.4 3.9E+02 0.0085 21.0 10.9 51 58-118 106-156 (262)
143 KOG3718 Carnitine O-acyltransf 22.4 2.3E+02 0.0049 25.3 5.3 26 45-70 14-39 (609)
144 PRK00064 recF recombination pr 22.4 2.8E+02 0.006 23.2 5.9 37 28-68 104-141 (361)
145 PRK10884 SH3 domain-containing 22.3 2.4E+02 0.0053 21.8 5.1 7 57-63 89-95 (206)
146 PRK15422 septal ring assembly 22.3 23 0.0005 23.2 -0.5 29 88-116 12-40 (79)
147 PF02887 PK_C: Pyruvate kinase 22.1 87 0.0019 21.4 2.4 24 26-50 5-28 (117)
148 PRK11239 hypothetical protein; 22.1 3.9E+02 0.0085 21.0 6.7 41 30-70 98-144 (215)
149 PF03962 Mnd1: Mnd1 family; I 22.0 3.6E+02 0.0078 20.5 7.0 63 58-120 31-95 (188)
150 cd00890 Prefoldin Prefoldin is 21.8 2.7E+02 0.0059 19.0 7.0 31 88-118 95-125 (129)
151 TIGR01001 metA homoserine O-su 21.7 42 0.0009 27.7 0.8 44 24-67 199-247 (300)
152 smart00252 SH2 Src homology 2 21.7 89 0.0019 19.7 2.3 38 32-70 39-82 (84)
153 PF02183 HALZ: Homeobox associ 21.6 1.8E+02 0.0038 16.8 4.2 29 90-118 8-36 (45)
154 PF09177 Syntaxin-6_N: Syntaxi 21.5 2.5E+02 0.0055 18.5 4.6 73 59-149 17-89 (97)
155 KOG0182 20S proteasome, regula 21.3 59 0.0013 25.6 1.5 18 36-53 7-24 (246)
156 PF09738 DUF2051: Double stran 21.2 4.1E+02 0.0089 21.9 6.5 75 85-160 217-295 (302)
157 PF04204 HTS: Homoserine O-suc 21.2 18 0.0004 29.7 -1.4 46 23-68 198-248 (298)
158 PF11853 DUF3373: Protein of u 21.0 89 0.0019 27.6 2.7 32 87-119 25-56 (489)
159 PF13094 CENP-Q: CENP-Q, a CEN 20.8 3.4E+02 0.0073 19.7 5.5 22 136-157 121-142 (160)
160 PRK09555 feoA ferrous iron tra 20.7 1.3E+02 0.0028 19.2 2.8 33 23-55 20-52 (74)
161 PRK00708 sec-independent trans 20.5 4E+02 0.0088 20.8 5.9 17 30-48 7-23 (209)
162 PF05873 Mt_ATP-synt_D: ATP sy 20.4 2.3E+02 0.0049 21.0 4.5 42 101-147 103-144 (161)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=2.8e-32 Score=209.14 Aligned_cols=145 Identities=29% Similarity=0.394 Sum_probs=96.2
Q ss_pred CCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCch--hHHHHHHhhcCCCCCCC
Q 048697 7 KGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS--VEAVANRFLGMNQLPND 75 (168)
Q Consensus 7 mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPs--v~~Vl~Ry~~~~~~~~~ 75 (168)
|||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|++|+ |++|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 88999999 99999999999999999999999999999999999999999987 99999999997755444
Q ss_pred ccccccccchhhh-hhHHHHHHHHH-------HHHHHHHHHHHHHHHH---HHhhccCCCCCCCCCCCCCCH-HHHHHHH
Q 048697 76 NIHSLVVGHRQVR-INELNQQHNEL-------RRQLDEEKEQEKILTQ---MRRGKETQPRMWETPVDEHNL-QEQLQMD 143 (168)
Q Consensus 76 ~~~~~~e~~~~~~-~~~l~~~~~~L-------~~~le~~k~~~~~l~~---~~~~~~~~~~~w~~~l~~Ls~-eeL~~L~ 143 (168)
......+...... +..+....... ...........+.+.. ..+ ..-+.++.+++. .+|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~l~~l~~~~~l~~~~ 154 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQR------KLTGEDLQSLSSLNELNSLE 154 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHH------HHhccccccCCHHHHhcchh
Confidence 3322111110000 11110000000 0011111111122221 122 233458888888 9999999
Q ss_pred HHHHHhhHhhhhhc
Q 048697 144 SAFMLGELDLLWKP 157 (168)
Q Consensus 144 ~~Le~~L~~v~~~~ 157 (168)
..|+..+..+....
T Consensus 155 ~~l~~~~~~~~~~~ 168 (195)
T KOG0014|consen 155 SQLESSLHNSRSSK 168 (195)
T ss_pred hHHHHhhcCCCCCC
Confidence 99999987666554
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.6e-31 Score=174.74 Aligned_cols=63 Identities=46% Similarity=0.760 Sum_probs=60.9
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhcCC
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMN 70 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~~~ 70 (168)
||+||+| ++||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++||+||.+.+
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~ 72 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS 72 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence 7888988 99999999999999999999999999999999999999999999999999999865
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=2.5e-28 Score=163.41 Aligned_cols=67 Identities=51% Similarity=0.771 Sum_probs=61.7
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCch-hHHHHHHhhcCCCCCC
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS-VEAVANRFLGMNQLPN 74 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPs-v~~Vl~Ry~~~~~~~~ 74 (168)
||+||+| ++||+|||.||||||+||||||||+||+|||||+|+++.|++|+ +++++++|...++..+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER 77 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence 6888888 99999999999999999999999999999999999999998877 9999999999875443
No 4
>smart00432 MADS MADS domain.
Probab=99.93 E-value=3.9e-27 Score=147.24 Aligned_cols=50 Identities=52% Similarity=0.885 Sum_probs=48.4
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCc
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHP 57 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sP 57 (168)
||+||+| ++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 7888888 9999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.93 E-value=1.5e-26 Score=144.69 Aligned_cols=50 Identities=54% Similarity=0.814 Sum_probs=47.8
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCc
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHP 57 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sP 57 (168)
||+||+| ++||+|||.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 6788888 9999999999999999999999999999999999999999876
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.91 E-value=6.5e-26 Score=137.39 Aligned_cols=42 Identities=52% Similarity=0.826 Sum_probs=40.0
Q ss_pred eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCC
Q 048697 15 IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGH 56 (168)
Q Consensus 15 ~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~s 56 (168)
++||+|||.||||||+|||+||||+||+|||||+|++|+|+|
T Consensus 10 ~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 10 KVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred HhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 799999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.71 E-value=3.9e-18 Score=135.36 Aligned_cols=70 Identities=44% Similarity=0.665 Sum_probs=62.4
Q ss_pred ccccCCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchh---------HHHHH
Q 048697 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSV---------EAVAN 64 (168)
Q Consensus 3 ~~~~mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv---------~~Vl~ 64 (168)
+|++.||+||+| .|||||||.||||||+|||||+|.+|-|+|.|++|.+|+|++|.. +++|.
T Consensus 58 ~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq 137 (338)
T KOG0015|consen 58 GKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQ 137 (338)
T ss_pred CccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHH
Confidence 688899999999 999999999999999999999999999999999999999999863 46676
Q ss_pred HhhcCCCC
Q 048697 65 RFLGMNQL 72 (168)
Q Consensus 65 Ry~~~~~~ 72 (168)
--++.+..
T Consensus 138 ~cLn~pd~ 145 (338)
T KOG0015|consen 138 ACLNAPDT 145 (338)
T ss_pred HHhcCCCC
Confidence 66776543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.21 E-value=5.2e-12 Score=104.68 Aligned_cols=59 Identities=41% Similarity=0.573 Sum_probs=54.5
Q ss_pred cCCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHH
Q 048697 6 TKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVAN 64 (168)
Q Consensus 6 ~mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~ 64 (168)
+|||+||.| .|||+||+.||+|||.||++|.|.+|.++|.|.+|..+.|+.|....|+.
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 689999999 99999999999999999999999999999999999999999987555443
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.29 E-value=2.3e-06 Score=58.98 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhcc
Q 048697 91 ELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKPQ 158 (168)
Q Consensus 91 ~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~ 158 (168)
.+...+..+..+++..+..++.|+..++.+.|. +|++||++||..|+..|+.+|.+|+.+..
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge------dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~ 70 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGE------DLESLSLKELQQLEQQLESALKRVRSRKD 70 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence 334455666677777777778888899976664 99999999999999999999999998763
No 10
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=88.24 E-value=0.98 Score=34.99 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=37.0
Q ss_pred hhch-hhHHHHH----HHHhhhhcCcEEEEEecCCC---CCcccCCchhHHHHHHhhc
Q 048697 19 SKRR-SWIYKNA----SELVTLTGSEIAIVVFSQSG---KPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 19 ~KRr-~gL~KKa----~ELs~LC~v~vavIvfSp~g---k~~~f~sPsv~~Vl~Ry~~ 68 (168)
.||. .-|+.|. .|++|-+|-++.|+|.+|+. ..-.||....+.|+..|+.
T Consensus 30 rkrq~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 30 RKRQQTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 4443 3466664 79999999999999999963 3457888777777777654
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=83.97 E-value=0.37 Score=24.12 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.5
Q ss_pred EEEEecCCCCCc
Q 048697 41 AIVVFSQSGKPY 52 (168)
Q Consensus 41 avIvfSp~gk~~ 52 (168)
.+.+|||+|+++
T Consensus 4 ~~t~FSp~Grl~ 15 (23)
T PF10584_consen 4 SITTFSPDGRLF 15 (23)
T ss_dssp STTSBBTTSSBH
T ss_pred CceeECCCCeEE
Confidence 345899999986
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=79.50 E-value=2.8 Score=26.01 Aligned_cols=32 Identities=6% Similarity=-0.183 Sum_probs=28.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhHhhhhhcc
Q 048697 127 WETPVDEHNLQEQLQMDSAFMLGELDLLWKPQ 158 (168)
Q Consensus 127 w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~ 158 (168)
.+.+|..||++||.+....|+.-+.|++....
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999887663
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.63 E-value=17 Score=26.89 Aligned_cols=61 Identities=23% Similarity=0.124 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
+.+..+..++..|++++..++.....|...+.... ..++.+||......|+..+..+..++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~----------~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLS----------SEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888888888887777432 35788888888888887777777666
No 14
>PRK04098 sec-independent translocase; Provisional
Probab=75.37 E-value=6.3 Score=29.38 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=17.8
Q ss_pred HHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 31 ELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 31 ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
||-++ +=||+|||+|. ++...+ -.+-..+..|+.
T Consensus 8 EllvI--~vVaLlvfGP~-KLP~~~-r~lGk~ir~~K~ 41 (158)
T PRK04098 8 EILVI--LVVAIIFLGPD-KLPQAM-VDIAKFFKAVKK 41 (158)
T ss_pred HHHHH--HHHHHhhcCch-HHHHHH-HHHHHHHHHHHH
Confidence 55444 44688999994 442221 123444444444
No 15
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=66.99 E-value=46 Score=24.10 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCH
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNL 136 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~ 136 (168)
+.+..|...+++.-.++-+..+....++.......-+ +..+.+...+.+
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQALeGsreLE-nLiGvs~sSc~L 107 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQALEGSRELE-NLIGVSCSSCDL 107 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHhccccchHHH
Confidence 5566666666666666555555555555433322222 444444444444
No 16
>PRK01919 tatB sec-independent translocase; Provisional
Probab=62.16 E-value=12 Score=28.15 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=8.1
Q ss_pred EEEEEecCCC
Q 048697 40 IAIVVFSQSG 49 (168)
Q Consensus 40 vavIvfSp~g 49 (168)
||||||+|..
T Consensus 15 VALiV~GPek 24 (169)
T PRK01919 15 VALVVIGPER 24 (169)
T ss_pred HHHheeCchH
Confidence 7999999943
No 17
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=60.49 E-value=28 Score=26.38 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=10.8
Q ss_pred hcCcEEEEEecCCC
Q 048697 36 TGSEIAIVVFSQSG 49 (168)
Q Consensus 36 C~v~vavIvfSp~g 49 (168)
.++..|.|||-|+-
T Consensus 11 ~~~k~C~IC~Kpst 24 (182)
T PF08432_consen 11 TDAKACFICYKPST 24 (182)
T ss_pred CCCCceeEecCCCc
Confidence 46788999888864
No 18
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=58.36 E-value=6.4 Score=21.11 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=18.1
Q ss_pred HHhhhhcCcEEEEEecCCCCC--cccCCch
Q 048697 31 ELVTLTGSEIAIVVFSQSGKP--YTFGHPS 58 (168)
Q Consensus 31 ELs~LC~v~vavIvfSp~gk~--~~f~sPs 58 (168)
.|+--|||-|-+-||...|.. |-.++|.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 366779999999999999954 4445564
No 19
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.06 E-value=35 Score=21.45 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
....++.++..++.+++..+++++.|+..+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777766653
No 20
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=56.79 E-value=47 Score=26.57 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=34.2
Q ss_pred cCcEEE-EEecCCCCCcccCCchhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 37 GSEIAI-VVFSQSGKPYTFGHPSVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 37 ~v~vav-IvfSp~gk~~~f~sPsv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
|++.++ +..|....|..-+-.++-+++++-.+.+ -..+.|.++-+.+..++++.-++.+..+
T Consensus 169 ~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~----------------V~td~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 169 GIPALVLLAETFGDRPDPRAAARVVEALNKMLGLN----------------VDTDKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred CCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCc----------------cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566544 4455555554444444555777777754 1244566666666666666555544444
No 21
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=56.63 E-value=1.1e+02 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=16.3
Q ss_pred CCcccCCch----------hHHHHHHhhcCCCCCC
Q 048697 50 KPYTFGHPS----------VEAVANRFLGMNQLPN 74 (168)
Q Consensus 50 k~~~f~sPs----------v~~Vl~Ry~~~~~~~~ 74 (168)
..++|+||+ +-..+.+|+.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPK 72 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCC
Confidence 347777764 3458889988765443
No 22
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=55.66 E-value=14 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=24.6
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCch
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sPs 58 (168)
.+|.-.+|++|+|||+.+.|+|+--|.+.
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 45677899999999999999998887654
No 23
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.24 E-value=88 Score=23.80 Aligned_cols=68 Identities=6% Similarity=-0.000 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc---cccccccc
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP---QLSKYIIE 165 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~---~~~~~~~~ 165 (168)
.+.|...+..|.+++...+.....++..++... ..|+++|+++=.+.|..-...-..++ ...+=||+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~----------s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS----------SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 445555666666666666666666666666432 24888888888887776655554444 33344555
Q ss_pred c
Q 048697 166 P 166 (168)
Q Consensus 166 ~ 166 (168)
|
T Consensus 151 p 151 (201)
T KOG4603|consen 151 P 151 (201)
T ss_pred H
Confidence 5
No 24
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=51.55 E-value=19 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhhcccc
Q 048697 131 VDEHNLQEQLQMDSAFMLGELDLLWKPQLS 160 (168)
Q Consensus 131 l~~Ls~eeL~~L~~~Le~~L~~v~~~~~~~ 160 (168)
+-++|.+||.+....+...|.+++++....
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~Lr~~~~~~ 31 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFELRFQKATG 31 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677777777777777777776655433
No 25
>PRK00736 hypothetical protein; Provisional
Probab=51.08 E-value=61 Score=20.44 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=28.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+-.+.+..|+..+..-+.+|+.+..+...|...++...
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888888888888888888888877777666543
No 26
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=50.77 E-value=92 Score=22.43 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhh
Q 048697 131 VDEHNLQEQLQMDSAFMLGELDLLW 155 (168)
Q Consensus 131 l~~Ls~eeL~~L~~~Le~~L~~v~~ 155 (168)
++.|+.+.|..|..+||.--..+.+
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le~ 72 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLEN 72 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999998888766554443
No 27
>PRK04325 hypothetical protein; Provisional
Probab=47.99 E-value=70 Score=20.52 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=28.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+-.+.+..|+..+...+.+++.++.+...|...++...
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667888888888888888888777777766666543
No 28
>PRK00295 hypothetical protein; Provisional
Probab=47.66 E-value=70 Score=20.16 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=28.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+-.+.+..|+..+...+++++.++.+...|...++...
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567888888888888888888877777776666543
No 29
>PRK04406 hypothetical protein; Provisional
Probab=47.64 E-value=75 Score=20.50 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+-.+.+..|+..+...+.+++.++.+...|...++...
T Consensus 22 fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 22 FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567888888888888888888877777776666544
No 30
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=47.24 E-value=9.4 Score=30.09 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.0
Q ss_pred hhhhcCcEEEEEecCCCCCcc
Q 048697 33 VTLTGSEIAIVVFSQSGKPYT 53 (168)
Q Consensus 33 s~LC~v~vavIvfSp~gk~~~ 53 (168)
||=.|-|.|+-+|||+|+.|-
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 345678999999999999873
No 31
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=46.93 E-value=15 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHhhhhcCcEEEEEecCCCCCcccCC---chhHHHHHHhh
Q 048697 29 ASELVTLTGSEIAIVVFSQSGKPYTFGH---PSVEAVANRFL 67 (168)
Q Consensus 29 a~ELs~LC~v~vavIvfSp~gk~~~f~s---Psv~~Vl~Ry~ 67 (168)
..+|-.|=||- |+..||++|++.+|-. |..-+++.++-
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G~l~~~~a~m~A~mc 43 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKGELDEEMAEMLAKMC 43 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeecCCCHHHHHHHHHHH
Confidence 45677777774 6678999999988833 33444444443
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.92 E-value=56 Score=20.56 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=25.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+..+.+..|+..+...+.+++.++.....|...++...
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567788888888888888888888777777766543
No 33
>PRK00846 hypothetical protein; Provisional
Probab=46.84 E-value=72 Score=20.82 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+..+.+..|+..+...+.+++..+.+...|...++...
T Consensus 24 fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 24 FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888888888888888888887777777766554
No 34
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=46.69 E-value=11 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=28.6
Q ss_pred eehhchhhHHHHHHHHhhhhcCcEE---EEEecCCCCCcccCC
Q 048697 17 TFSKRRSWIYKNASELVTLTGSEIA---IVVFSQSGKPYTFGH 56 (168)
Q Consensus 17 Tf~KRr~gL~KKa~ELs~LC~v~va---vIvfSp~gk~~~f~s 56 (168)
-|.+-|-|++||. -+..||+.+-+ -|.||+.++...|++
T Consensus 119 ~~~~~~~~~~~~~-~~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 119 FYRREKGGFLKKI-KFNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhccCchhhhh-HHHHHhhhhhhhEEEeeccccCCceeeee
Confidence 3445577888886 47889977654 456999998888765
No 35
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.36 E-value=40 Score=31.94 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 048697 95 QHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGE 150 (168)
Q Consensus 95 ~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L 150 (168)
++.+|.+.+++.+++.+.++..+...... ..=..++-.++.+.|..++..|+...
T Consensus 931 e~~kl~kkl~klqk~~~~l~~r~~~~~~~-~k~p~~v~~~~~~Kl~~~~~ei~~~~ 985 (995)
T KOG0432|consen 931 EIQKLAKKLEKLQKQLDKLQARISSSDYQ-EKAPLEVKEKNKEKLKELEAEIENLK 985 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445455555555555555554322221 11112334455556666666555543
No 36
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=45.97 E-value=21 Score=22.27 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=20.1
Q ss_pred hcCcEEEEEecCCCCCcccCCch-hHHHHHHh
Q 048697 36 TGSEIAIVVFSQSGKPYTFGHPS-VEAVANRF 66 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~f~sPs-v~~Vl~Ry 66 (168)
|+-.-.|+|+ |.+..|...+|. +.+|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 5444445555 777888888875 88888753
No 37
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.87 E-value=67 Score=22.05 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
....++.++..+++++++.+.++..|...+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788887777777777776663
No 38
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=45.67 E-value=6.6 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.1
Q ss_pred eee-ehhchhhHHHH---------HHHHhhhhcCcEEEEEecCCCCC
Q 048697 15 IIT-FSKRRSWIYKN---------ASELVTLTGSEIAIVVFSQSGKP 51 (168)
Q Consensus 15 ~vT-f~KRr~gL~KK---------a~ELs~LC~v~vavIvfSp~gk~ 51 (168)
.++ ||+-|+-|.+| +.|+.+-||-|+-+++..|.|.+
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 344 46667667665 57899999999999999996644
No 39
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=45.46 E-value=7 Score=32.96 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhcCcEEE-EEecCCCCCcccCCchhH
Q 048697 23 SWIYKNASELVTLTGSEIAI-VVFSQSGKPYTFGHPSVE 60 (168)
Q Consensus 23 ~gL~KKa~ELs~LC~v~vav-IvfSp~gk~~~f~sPsv~ 60 (168)
.||+|=..=..-||+|..+| -+.|..|+|.+|++||..
T Consensus 54 d~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 54 DGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ---------------------------------------
T ss_pred hHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 34444445558899999999 778888999999999976
No 40
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.24 E-value=1.2e+02 Score=27.97 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFML 148 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~ 148 (168)
..++..++..++++++....+...-+.... ..+..-..+...+|.++..+|..
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~-------l~~~~~~~~~~~~L~~l~~ql~~ 248 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSD-------LLMGNNATLATQQLAELNTELSR 248 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CcccCCccchHHHHHHHHHHHHH
Confidence 455555666666655554443333333222 22222344566777777776654
No 41
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=1.3e+02 Score=23.06 Aligned_cols=12 Identities=8% Similarity=0.517 Sum_probs=6.2
Q ss_pred chhHHHHHHhhc
Q 048697 57 PSVEAVANRFLG 68 (168)
Q Consensus 57 Psv~~Vl~Ry~~ 68 (168)
|..+..|++|++
T Consensus 121 ~~L~~~l~kyqd 132 (198)
T KOG0861|consen 121 PYLDTLLSKYQD 132 (198)
T ss_pred hhHHHHHHHhcC
Confidence 345555555555
No 42
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=44.90 E-value=1.7e+02 Score=27.35 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCCcccCCch---------hHHHHHHhhcCCCC
Q 048697 39 EIAIVVFSQSGKPYTFGHPS---------VEAVANRFLGMNQL 72 (168)
Q Consensus 39 ~vavIvfSp~gk~~~f~sPs---------v~~Vl~Ry~~~~~~ 72 (168)
++.|+.---.|+-+.|+||. +-..+.+|+.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (762)
T PLN03229 49 DLAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEK 91 (762)
T ss_pred ceEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCC
Confidence 34555555567777888764 55677777766543
No 43
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=42.89 E-value=1.2e+02 Score=21.52 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.0
Q ss_pred eeehhchhhHHHHHHHHhhhh
Q 048697 16 ITFSKRRSWIYKNASELVTLT 36 (168)
Q Consensus 16 vTf~KRr~gL~KKa~ELs~LC 36 (168)
.+|+|+|..++++-.+-.+=|
T Consensus 5 ~~~rk~R~~~y~~lgl~~vkC 25 (120)
T PF04521_consen 5 RCVRKYRASVYKKLGLSAVKC 25 (120)
T ss_pred HHHHHHHHHHHHHcCCeeeee
Confidence 478999999999988865534
No 44
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.89 E-value=14 Score=29.09 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.6
Q ss_pred CcEEEEEecCCCCCc
Q 048697 38 SEIAIVVFSQSGKPY 52 (168)
Q Consensus 38 v~vavIvfSp~gk~~ 52 (168)
-|=|+-||||+|.++
T Consensus 4 ydraltvFSPDGhL~ 18 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLF 18 (249)
T ss_pred cccceEEECCCCCEE
Confidence 355788899998876
No 45
>COG3411 Ferredoxin [Energy production and conversion]
Probab=42.57 E-value=31 Score=21.70 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=25.0
Q ss_pred EEEEecCCCCCcccCCch-hHHHHHHhhcCC
Q 048697 41 AIVVFSQSGKPYTFGHPS-VEAVANRFLGMN 70 (168)
Q Consensus 41 avIvfSp~gk~~~f~sPs-v~~Vl~Ry~~~~ 70 (168)
.+++..|.|-.|...+|. ++.|++......
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHhCC
Confidence 578888999999999985 999999887744
No 46
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=40.97 E-value=1.1e+02 Score=23.13 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhcc
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKPQ 158 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~ 158 (168)
..++|.+++.+++++|. ++.+.+.+. + ++-|-..+-|.+|...+-+.=.+.+.+++
T Consensus 48 ~T~eLkNeLREVREELk---EKmeEIKQI-K-----------diMDKDFDKL~EFVEIMKeMQkDMDEKMD 103 (205)
T PF15079_consen 48 GTQELKNELREVREELK---EKMEEIKQI-K-----------DIMDKDFDKLHEFVEIMKEMQKDMDEKMD 103 (205)
T ss_pred ccHHHHHHHHHHHHHHH---HHHHHHHHH-H-----------HHHhhhHHHHHHHHHHHHHHHHhHHHhhh
Confidence 34577777777776664 333333322 2 44566778888888888777666666653
No 47
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=40.90 E-value=1.5e+02 Score=25.67 Aligned_cols=48 Identities=10% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKIL 113 (168)
Q Consensus 59 v~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l 113 (168)
++.+++.|.......... .......++..+...++++++........-
T Consensus 140 ~n~l~~~yi~~~~~~~~~-------~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQ-------DSDSAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHhhcccchh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888754211110 112355677777777777776655544433
No 48
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=40.57 E-value=1.2e+02 Score=21.71 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=5.8
Q ss_pred ccCCchhHHHHHHhhcC
Q 048697 53 TFGHPSVEAVANRFLGM 69 (168)
Q Consensus 53 ~f~sPsv~~Vl~Ry~~~ 69 (168)
+|+.|...+|..++.+.
T Consensus 16 sfaA~~~~~v~~~l~~L 32 (126)
T PF09403_consen 16 SFAATATASVESELNQL 32 (126)
T ss_dssp -------HHHHHHHHHH
T ss_pred HHHcccchHHHHHHHHH
Confidence 44445555666666553
No 49
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=40.37 E-value=25 Score=24.06 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHhhhhcCcEEEEEecCCCCCcccCCc
Q 048697 27 KNASELVTLTGSEIAIVVFSQSGKPYTFGHP 57 (168)
Q Consensus 27 KKa~ELs~LC~v~vavIvfSp~gk~~~f~sP 57 (168)
-|..||--+=||-+ .=.|||+||+.+|-+|
T Consensus 3 ekLdeLlqi~Gv~A-AGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVMA-AGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccceeE-eceeCCCCceEEeeCC
Confidence 35677877777754 4579999999998653
No 50
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=40.33 E-value=25 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHhhhhcCcEEEEEecCCCCCccc
Q 048697 31 ELVTLTGSEIAIVVFSQSGKPYTF 54 (168)
Q Consensus 31 ELs~LC~v~vavIvfSp~gk~~~f 54 (168)
=+.++|||||-+++-|.+.+-..|
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHHhhccceeeeeecccCccccC
Confidence 367899999999999987764444
No 51
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=39.97 E-value=20 Score=20.25 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.9
Q ss_pred hhchhhHHHHHHHHhhhhcCc
Q 048697 19 SKRRSWIYKNASELVTLTGSE 39 (168)
Q Consensus 19 ~KRr~gL~KKa~ELs~LC~v~ 39 (168)
..||.-+++|=-|+--|+|.|
T Consensus 16 ~~RRk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 16 ASRRKEILKKHPEIKKLMGPD 36 (39)
T ss_pred HHHHHHHHHhChHHHHHhCCC
Confidence 469999999999999999986
No 52
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=39.95 E-value=1.3e+02 Score=21.24 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhh
Q 048697 95 QHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDL 153 (168)
Q Consensus 95 ~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v 153 (168)
.+++|.++|.+++-.|+.|...++.-.| +--..+-.-|+..+=..+..+....|...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~--p~~~p~~~~LTp~qKe~~I~s~~~~Lss~ 60 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVG--PGPSPDDEVLTPAQKEAMITSAVSKLSSQ 60 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----S-TT--B--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCC--CCCCCCccccChHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888876543 00112445689888888887777776643
No 53
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.81 E-value=14 Score=27.24 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHhhhhcCcEEEEE----ecCC--CCCcccCC-----chhHHHHHHhhcCC
Q 048697 30 SELVTLTGSEIAIVV----FSQS--GKPYTFGH-----PSVEAVANRFLGMN 70 (168)
Q Consensus 30 ~ELs~LC~v~vavIv----fSp~--gk~~~f~s-----Psv~~Vl~Ry~~~~ 70 (168)
+++++||+...-+.- --|+ ....-|+. -.|++||+||+.+.
T Consensus 43 ~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL~ 94 (172)
T KOG4316|consen 43 SARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRLH 94 (172)
T ss_pred hHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhcc
Confidence 688999987653321 1122 12223322 23999999999876
No 54
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=39.66 E-value=2.4e+02 Score=24.60 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=35.1
Q ss_pred Cccceeeeeeehhc------hhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 8 GRQKIEMIITFSKR------RSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 8 gr~ki~i~vTf~KR------r~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
++..|.|-+++++- -++|+|+- .|.+ ..-+-+++|+++|+|..| .++.+||+.|..
T Consensus 264 ~~~~v~i~I~lk~~~~~~~~~~~L~k~~-~L~~--~~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~ 325 (439)
T PHA02592 264 TEDGFRFKVTLKREENEEATHEKIMKDF-GLIE--RVSQNITVINENGKLKVY--ENAEDLIRDFVE 325 (439)
T ss_pred CCCceEEEEEECCCCCHHHHHHHHHHhc-Cchh--eeeeeEEEEecCCeeeec--CCHHHHHHHHHH
Confidence 45556666666432 24566543 2222 334678999999998877 456678888866
No 55
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.66 E-value=39 Score=26.16 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=48.5
Q ss_pred hHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC----
Q 048697 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEH---- 134 (168)
Q Consensus 59 v~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~L---- 134 (168)
+.+.+++|......... ......+.++.+|+.....-+....+...++..-...-. -|+..|+..
T Consensus 44 F~sALe~f~sl~~~~gg--------dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~---EWe~EL~~Y~~~s 112 (201)
T PF11172_consen 44 FKSALEQFKSLVNFDGG--------DLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFD---EWEQELDQYSNAS 112 (201)
T ss_pred HHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCHH
Confidence 56778888876544332 234566777788887777777777777777765443322 254444443
Q ss_pred ----CHHHHHHHHHHHHHhhH
Q 048697 135 ----NLQEQLQMDSAFMLGEL 151 (168)
Q Consensus 135 ----s~eeL~~L~~~Le~~L~ 151 (168)
|...|..........+.
T Consensus 113 LR~~S~~kL~~tr~~Y~~L~~ 133 (201)
T PF11172_consen 113 LRRASEQKLAETRRRYAQLIK 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444443
No 56
>smart00415 HSF heat shock factor.
Probab=39.10 E-value=33 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred HHHHHHhhhhcCcEE-EEEecCCCCCcccCCch--hHHHHHHhhcCC
Q 048697 27 KNASELVTLTGSEIA-IVVFSQSGKPYTFGHPS--VEAVANRFLGMN 70 (168)
Q Consensus 27 KKa~ELs~LC~v~va-vIvfSp~gk~~~f~sPs--v~~Vl~Ry~~~~ 70 (168)
.|.+++ |.+.+.. +|-.+|+|+.+....|. .+.|+.+|-...
T Consensus 7 ~kL~~~--l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~ 51 (105)
T smart00415 7 TKLYLL--VEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHN 51 (105)
T ss_pred HHHHHH--HhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCC
Confidence 344443 5666665 88999999988887776 678999886643
No 57
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=38.93 E-value=1.2e+02 Score=23.42 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCcccC-Cc-hhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 50 KPYTFG-HP-SVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQ 115 (168)
Q Consensus 50 k~~~f~-sP-sv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~ 115 (168)
.+|+|. +| .++..++.|...-+ ..-....+...+..|-.++++-+.+...|+.
T Consensus 107 ~~Y~~~~t~~~lD~a~~~~~~ll~-------------~~i~lAe~E~~l~~L~~ei~kT~rRVNalE~ 161 (201)
T PRK02195 107 IEYSLLNTPIWVDTGIELLKELVQ-------------LKIEAEVLQERLLLLEEELRKTTQRVNLFEK 161 (201)
T ss_pred CCcCCccCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567664 34 48999998876421 1123445556666666677666666555553
No 58
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.70 E-value=1.4e+02 Score=22.36 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=32.9
Q ss_pred cCCch-hHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 54 FGHPS-VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQ 115 (168)
Q Consensus 54 f~sPs-v~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~ 115 (168)
+-.|+ |.+.+.+-.+...... +..++...+..++..++++++...+....+..
T Consensus 32 ~L~P~~v~~~v~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~el~~le~~k~~id~ 85 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLNVEE---------YQNSRERQLRKRLEELRQELAPLEKIKQEIDE 85 (180)
T ss_pred eECHHHHHHHHHHHhccccchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55685 7778877777553221 12345666777777777777776655555443
No 59
>PRK02119 hypothetical protein; Provisional
Probab=38.03 E-value=1.1e+02 Score=19.59 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
|-.+.+..|+..+...+++++.++.....|...++...
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567888888888888888888888777777666544
No 60
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=37.19 E-value=33 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++-++|.+||.+....+...|.+.+++.
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777776666666666666554
No 61
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.86 E-value=1.1e+02 Score=21.10 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
++..+..++..|+.++...-+.+..|+
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444
No 62
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=36.43 E-value=45 Score=21.90 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=23.3
Q ss_pred cEEEEEecCCC--CCcccCCc-hhHHHHHHhhcC
Q 048697 39 EIAIVVFSQSG--KPYTFGHP-SVEAVANRFLGM 69 (168)
Q Consensus 39 ~vavIvfSp~g--k~~~f~sP-sv~~Vl~Ry~~~ 69 (168)
.+-|+|++.++ +++++..+ ..+.++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46789999998 56666544 499999999863
No 63
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=36.35 E-value=13 Score=26.49 Aligned_cols=17 Identities=18% Similarity=0.661 Sum_probs=11.7
Q ss_pred EEEecCCCCCcccCCch
Q 048697 42 IVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 42 vIvfSp~gk~~~f~sPs 58 (168)
+|+|.|.|-...||.|.
T Consensus 79 ail~aP~gs~V~YGQP~ 95 (121)
T PF04019_consen 79 AILYAPEGSVVLYGQPG 95 (121)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 35567777777777775
No 64
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.31 E-value=1.1e+02 Score=19.39 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=27.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
|-.+.+..|+..+...+.+++....+...|...++...
T Consensus 19 fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 19 FQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567888888888888888887777777776666543
No 65
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=36.15 E-value=18 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHhhhhcCcEEEEEecCCCCCcccCC
Q 048697 29 ASELVTLTGSEIAIVVFSQSGKPYTFGH 56 (168)
Q Consensus 29 a~ELs~LC~v~vavIvfSp~gk~~~f~s 56 (168)
+-.-++|||+.++++.|+..+..-.|.|
T Consensus 271 ~v~ralLlGaQA~~~A~G~~~~~~~~~w 298 (341)
T PF13252_consen 271 AVARALLLGAQALVIAFGKSGSGMRFFW 298 (341)
T ss_pred ceeeeeeechhheeeeeeccCCCccccc
Confidence 3456789999999999998544444443
No 66
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=36.05 E-value=45 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.635 Sum_probs=23.2
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCc
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHP 57 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sP 57 (168)
.+|.-.||++|+|||....|+|+-.|.-
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t 161 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQR 161 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCc
Confidence 3566789999999999999998877653
No 67
>PHA00327 minor capsid protein
Probab=35.75 E-value=1.4e+02 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
++.+-.++..++.++.++++.+..++
T Consensus 110 v~~l~~~~~r~~aelQnL~~q~r~in 135 (187)
T PHA00327 110 VQRLTYERKRMQAELQNLREQNRLIN 135 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777788887777776665
No 68
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=35.62 E-value=28 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=17.6
Q ss_pred hhcCcE---EEEEecCCCCCcccCCch
Q 048697 35 LTGSEI---AIVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 35 LC~v~v---avIvfSp~gk~~~f~sPs 58 (168)
-||..| +-.-..-+|+.|.|+|+.
T Consensus 5 vcg~~v~~~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 5 VCGMKVPGNAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp GGG-BE-----EEEEETTEEEEESSHH
T ss_pred CCCCEEccCccEEEEECCEEEEEcCHH
Confidence 378888 667777889999999986
No 69
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=35.48 E-value=39 Score=24.52 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=24.6
Q ss_pred hcCcEEEEEecCCCCCcccCCc-hhHHHHHHhhcC
Q 048697 36 TGSEIAIVVFSQSGKPYTFGHP-SVEAVANRFLGM 69 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~f~sP-sv~~Vl~Ry~~~ 69 (168)
|+...++-|.-++|+...|..| .+.+|+..|=..
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 3344445444489999999998 599999988553
No 70
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=35.04 E-value=80 Score=26.24 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 91 ELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 91 ~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
+++++-.+|+.|++--.+.++.|++.+++
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQ 32 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQ 32 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445455566666555666666655554
No 71
>PHA03162 hypothetical protein; Provisional
Probab=34.56 E-value=1.8e+02 Score=21.06 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhh
Q 048697 96 HNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDL 153 (168)
Q Consensus 96 ~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v 153 (168)
+++|.++|.+++-.|+.|.+.++.-.+....-+ -..|+..+=+.+..+.-..|...
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~--d~~LTp~qKea~I~s~v~~Lts~ 70 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPG--DPILTPAAKEAMIGAATAALTRQ 70 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CccCCHHHHHHHHHHHHHHHHHH
Confidence 456667777777778888888876444311111 22488888888877777766643
No 72
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.54 E-value=1.3e+02 Score=20.99 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQ 115 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~ 115 (168)
.++..+..++..|++++...-+.+..|+.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655555555443
No 73
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=34.50 E-value=42 Score=22.60 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=27.3
Q ss_pred hhcCcEEEEEecCCC-CCcccCCch-hHHHHHHhhcC
Q 048697 35 LTGSEIAIVVFSQSG-KPYTFGHPS-VEAVANRFLGM 69 (168)
Q Consensus 35 LC~v~vavIvfSp~g-k~~~f~sPs-v~~Vl~Ry~~~ 69 (168)
+|..+--|.|+-|.| -.|....|. +.+|++.+...
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~ 80 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALE 80 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhc
Confidence 588888888887877 556666786 99999998763
No 74
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.41 E-value=42 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=16.7
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
==|+.|+||-+....+.|. -+...+++++++=+.+...
T Consensus 10 ~~~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le~ 47 (263)
T PRK10803 10 LSLSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLER 47 (263)
T ss_pred HHHHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHHH
Confidence 3356777754443344432 1112234454544444433
No 75
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=34.13 E-value=40 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhhh----cCcEEEEEecCCCCCccc
Q 048697 24 WIYKNASELVTLT----GSEIAIVVFSQSGKPYTF 54 (168)
Q Consensus 24 gL~KKa~ELs~LC----~v~vavIvfSp~gk~~~f 54 (168)
-+++.|.+++-.. +..|+.||++|+|+....
T Consensus 6 ~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~ 40 (102)
T PF00383_consen 6 EFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIAT 40 (102)
T ss_dssp HHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHhccccCCCCEEEEEEeccCccEEE
Confidence 4678888888777 899999999987765444
No 76
>PF03584 Herpes_ICP4_N: Herpesvirus ICP4-like protein N-terminal region; InterPro: IPR005206 The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerisation [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus
Probab=33.86 E-value=1.2e+02 Score=22.84 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.4
Q ss_pred EEecCCC--CCcccCCchhHHHHHHhhcCCC
Q 048697 43 VVFSQSG--KPYTFGHPSVEAVANRFLGMNQ 71 (168)
Q Consensus 43 IvfSp~g--k~~~f~sPsv~~Vl~Ry~~~~~ 71 (168)
|-|++.| ++-.|..|.|.+...||...+.
T Consensus 17 v~~Gg~Gd~R~gLwd~peV~~A~~rf~as~~ 47 (173)
T PF03584_consen 17 VRYGGSGDSRPGLWDDPEVREAAARFEASPG 47 (173)
T ss_pred eeeCCCCCCCccccCCHHHHHHHHHHHhccC
Confidence 5678776 7889999999999999998654
No 77
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=33.53 E-value=1.8e+02 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 39 EIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 39 ~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
-+|+|+.+| -++-|..|+-+.++.||..
T Consensus 15 G~~ii~~G~--~l~~y~tPTeEeL~~r~sP 42 (128)
T PF07960_consen 15 GAVIIGGGP--ALVKYTTPTEEELFKRYSP 42 (128)
T ss_pred cceeEeech--HHheecCCCHHHHHHhcCH
Confidence 345565555 5778899999999999966
No 78
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.48 E-value=31 Score=29.45 Aligned_cols=39 Identities=10% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHhhhhcCcE--EEEEecCCCCCcccCCc-----hhHHHHHHhhcCC
Q 048697 30 SELVTLTGSEI--AIVVFSQSGKPYTFGHP-----SVEAVANRFLGMN 70 (168)
Q Consensus 30 ~ELs~LC~v~v--avIvfSp~gk~~~f~sP-----sv~~Vl~Ry~~~~ 70 (168)
+-|||+||-+| |||--. ...|-|..| ++++.+..|...+
T Consensus 367 yalSV~~~~~V~HClIy~t--atG~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQT--ATGFGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeec--cccccccchhHHHHHHHHHHHHHhhhh
Confidence 45899998777 555433 445666666 4889999998765
No 79
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=33.25 E-value=16 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.677 Sum_probs=21.9
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCch
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sPs 58 (168)
.+|--.||++|+|||-.++|+++-.|++.
T Consensus 141 ~~l~~~~g~~v~ViI~Dt~gr~~r~G~~~ 169 (228)
T PF01996_consen 141 EELKERTGKDVGVIITDTNGRPWRLGQTG 169 (228)
T ss_dssp HHHHHHHS---EEEEEEEEEETTEECEEE
T ss_pred HHHHHHHCCceEEEEECCCCcEEecCCcc
Confidence 46777899999999999999999888754
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.67 E-value=2.1e+02 Score=23.65 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 129 TPVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 129 ~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++++.++.++|..+...|......+..+.
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999988887777665
No 81
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.25 E-value=1.4e+02 Score=19.11 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
.+..|..+++.|+++-......+..|.....
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444443333333444444433
No 82
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=32.24 E-value=1.1e+02 Score=24.00 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHh--hhhcCcEEEEEecCCC-CCcccCCc----hhHHHHHHhhc
Q 048697 21 RRSWIYKNASELV--TLTGSEIAIVVFSQSG-KPYTFGHP----SVEAVANRFLG 68 (168)
Q Consensus 21 Rr~gL~KKa~ELs--~LC~v~vavIvfSp~g-k~~~f~sP----sv~~Vl~Ry~~ 68 (168)
-+..+.+...|++ -.-+++.+|++|...| ..+.+|.. ++++|++.|.+
T Consensus 55 t~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~ 109 (243)
T cd00032 55 TAEEILEELKEFASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNG 109 (243)
T ss_pred CHHHHHHHHHHHHhccCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhcc
Confidence 3456778888887 3568888888887776 66677654 48999999973
No 83
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=32.04 E-value=37 Score=21.63 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=19.0
Q ss_pred hcCcEEEEEecCCCCCcccCCch-hHHHHHHh
Q 048697 36 TGSEIAIVVFSQSGKPYTFGHPS-VEAVANRF 66 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~f~sPs-v~~Vl~Ry 66 (168)
|+-..+|+| +|..|...+|. +.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 655555666 37777777775 88888764
No 84
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=31.97 E-value=69 Score=22.16 Aligned_cols=19 Identities=11% Similarity=0.101 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 048697 130 PVDEHNLQEQLQMDSAFML 148 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~ 148 (168)
.++.|+.+|+..|...+|+
T Consensus 86 Rle~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIEE 104 (104)
T ss_pred HHHhCCHHHHHHHHHHhcC
Confidence 5689999999999988763
No 85
>PLN03194 putative disease resistance protein; Provisional
Probab=31.80 E-value=33 Score=26.28 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=21.9
Q ss_pred hhcCcEEEEEecCCCCCcccCCchhHHHHHH
Q 048697 35 LTGSEIAIVVFSQSGKPYTFGHPSVEAVANR 65 (168)
Q Consensus 35 LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~R 65 (168)
+=.+.++|+||||+----.||--+...|++.
T Consensus 78 IeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 78 IRNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HHhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 3468899999999765555655566666654
No 86
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=31.50 E-value=1.2e+02 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccC
Q 048697 89 INELNQQHNELRRQLDEEKE----QEKILTQMRRGKET 122 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~----~~~~l~~~~~~~~~ 122 (168)
=+.|..+|+.|+++++...+ ..+.+....+.+.|
T Consensus 7 Wq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g 44 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFGG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCc
Confidence 35678899999999998833 45556666666655
No 87
>COG3022 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.41 E-value=1.7e+02 Score=23.63 Aligned_cols=31 Identities=3% Similarity=-0.100 Sum_probs=22.9
Q ss_pred HHhhccCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 048697 116 MRRGKETQPRMWETPVDEHNLQEQLQMDSAFM 147 (168)
Q Consensus 116 ~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le 147 (168)
.+..+.|. .|-+-+.+.|+.+++.-+.+.|-
T Consensus 77 Ai~~f~G~-vY~~L~~~~L~~~~~~~~q~hl~ 107 (253)
T COG3022 77 AILAFNGD-VYTGLDAETLSEKDQAYLQQHLR 107 (253)
T ss_pred HHHHhccc-hhcccchhhCCHHHHHHHHhhHH
Confidence 44556665 66677888999999998877653
No 88
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.93 E-value=3.8e+02 Score=24.77 Aligned_cols=26 Identities=4% Similarity=-0.015 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhh
Q 048697 125 RMWETPVDEHNLQEQLQMDSAFMLGE 150 (168)
Q Consensus 125 ~~w~~~l~~Ls~eeL~~L~~~Le~~L 150 (168)
.....+..+|+++.|.+|...|...=
T Consensus 148 ~~~~~D~~dlsl~kLeelr~~L~~L~ 173 (660)
T KOG4302|consen 148 SFLIADESDLSLEKLEELREHLNELQ 173 (660)
T ss_pred cccccCcccccHHHHHHHHHHHHHHH
Confidence 45566888999999999988887653
No 89
>COG5570 Uncharacterized small protein [Function unknown]
Probab=30.91 E-value=1.3e+02 Score=18.22 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhh
Q 048697 107 KEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWK 156 (168)
Q Consensus 107 k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~ 156 (168)
.++...|+..+.+.... ++.+|+-+.+|..-.-.|-+.+.+++.+
T Consensus 11 ~kkHg~le~ei~ea~n~-----Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 11 EKKHGNLEREIQEAMNS-----PSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHhhchHHHHHHHHhcC-----CCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555543332 4678888888887777776666655544
No 90
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.67 E-value=2.3e+02 Score=24.97 Aligned_cols=68 Identities=22% Similarity=0.158 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC------CCCCCCHHHHHHHHHHHHHhhHhhh
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWET------PVDEHNLQEQLQMDSAFMLGELDLL 154 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~------~l~~Ls~eeL~~L~~~Le~~L~~v~ 154 (168)
..+..|..++..++.+++....+...++..++....-..-+.. ..+..+..++.++...+...+..+.
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLL 144 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555555443321111000000 1234566777766655555544443
No 91
>PHA03155 hypothetical protein; Provisional
Probab=30.36 E-value=2e+02 Score=20.28 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhh
Q 048697 96 HNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDL 153 (168)
Q Consensus 96 ~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v 153 (168)
+++|.++|.+++-.|+.|.+.++.-.+ ++-.-|+..+=..+..+....|...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~------p~d~~LT~~qKea~I~s~v~~Lt~~ 61 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGN------PEDELLTPAQKDAIINSLVNKLTKK 61 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC------CCccccCHHHHHHHHHHHHHHHHHH
Confidence 445666777777777778877764222 2335588888888887777777643
No 92
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.22 E-value=1.3e+02 Score=20.60 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 048697 96 HNELRRQLDE 105 (168)
Q Consensus 96 ~~~L~~~le~ 105 (168)
+.+|++++++
T Consensus 74 L~~Lk~kl~~ 83 (100)
T PF04568_consen 74 LKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 93
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=30.11 E-value=1.1e+02 Score=25.74 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=51.2
Q ss_pred hhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCCCCCCCCCCCCC
Q 048697 58 SVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQM--RRGKETQPRMWETPVDEHN 135 (168)
Q Consensus 58 sv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~--~~~~~~~~~~w~~~l~~Ls 135 (168)
.++++.+||........+.. +- ...+....+..++.+|..-.+..++-....... .+.+... . -|+++-+|-
T Consensus 8 kl~~~~~r~~el~~~L~~p~---v~-~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~-~-~D~em~ema 81 (363)
T COG0216 8 KLESLLERYEELEALLSDPE---VI-SDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE-E-KDPEMREMA 81 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcc---cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHH
Confidence 37889999987653222211 00 123466777777777766555544333222211 1111111 1 234556778
Q ss_pred HHHHHHHHHHHHHhhHhhhhhc
Q 048697 136 LQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 136 ~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
.+|+..++..++..-.+++.-+
T Consensus 82 ~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 82 EEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888877766666554
No 94
>PRK01770 sec-independent translocase; Provisional
Probab=29.84 E-value=67 Score=24.29 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhcC
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGM 69 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~~ 69 (168)
.||-+++ =||+|||+|. ++-..+ -.+...+.+|+++
T Consensus 7 ~ELllI~--vVaLlV~GPe-rLP~~~-r~lg~~i~~~R~~ 42 (171)
T PRK01770 7 SELLLVF--VIGLVVLGPQ-RLPVAV-KTVAGWIRALRSL 42 (171)
T ss_pred HHHHHHH--HHHHHhcCch-HHHHHH-HHHHHHHHHHHHH
Confidence 3555553 3588999984 331111 1244455555553
No 95
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=29.78 E-value=37 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=13.1
Q ss_pred cEEEEEecCCCCCcccCC
Q 048697 39 EIAIVVFSQSGKPYTFGH 56 (168)
Q Consensus 39 ~vavIvfSp~gk~~~f~s 56 (168)
.-.-..|||+|+-..|++
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 445678999999888865
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.43 E-value=1.6e+02 Score=29.77 Aligned_cols=27 Identities=7% Similarity=-0.030 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWK 156 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~ 156 (168)
.+.+|+.++|..+...++..+......
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~q 457 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEE 457 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999998888887776655443
No 97
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=29.36 E-value=38 Score=30.91 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred hhhhcCcEEEEEecCCCCCccc
Q 048697 33 VTLTGSEIAIVVFSQSGKPYTF 54 (168)
Q Consensus 33 s~LC~v~vavIvfSp~gk~~~f 54 (168)
|+|.|+-++||.|.++|..+.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 5999999999999999988774
No 98
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=29.02 E-value=1.8e+02 Score=25.45 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=20.2
Q ss_pred EEEEecCCCCCcccCCchhHHHHHHhhcC
Q 048697 41 AIVVFSQSGKPYTFGHPSVEAVANRFLGM 69 (168)
Q Consensus 41 avIvfSp~gk~~~f~sPsv~~Vl~Ry~~~ 69 (168)
-+++|.|+|+|..| ++.+||+.|...
T Consensus 302 Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 302 NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 66777888888777 678888888763
No 99
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=28.94 E-value=52 Score=19.83 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 131 VDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 131 l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
+.++|.+||......+...|...+++.
T Consensus 3 ir~ls~~eL~~~l~~l~~elf~Lr~q~ 29 (57)
T cd00427 3 LREKSDEELQEKLDELKKELFNLRFQK 29 (57)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666665444
No 100
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=28.54 E-value=21 Score=18.53 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=15.8
Q ss_pred hhhcCcEEEEEecCCCCCcccCCch
Q 048697 34 TLTGSEIAIVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 34 ~LC~v~vavIvfSp~gk~~~f~sPs 58 (168)
|=||..-.+++.+. |++|.||+.+
T Consensus 4 ia~G~~ht~al~~~-g~v~~wG~n~ 27 (30)
T PF13540_consen 4 IACGGYHTCALTSD-GEVYCWGDNN 27 (30)
T ss_dssp EEEESSEEEEEE-T-TEEEEEE--T
T ss_pred EEecCCEEEEEEcC-CCEEEEcCCc
Confidence 45777777777764 8999998743
No 101
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=28.24 E-value=27 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.4
Q ss_pred hhhhcCcEEEEEecCC
Q 048697 33 VTLTGSEIAIVVFSQS 48 (168)
Q Consensus 33 s~LC~v~vavIvfSp~ 48 (168)
.-+||+|||++||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999764
No 102
>TIGR03138 QueF 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=28.21 E-value=62 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.2
Q ss_pred HHHHhhhhcCcEEEEEecCCC
Q 048697 29 ASELVTLTGSEIAIVVFSQSG 49 (168)
Q Consensus 29 a~ELs~LC~v~vavIvfSp~g 49 (168)
..+||--||++|.|-+|+++.
T Consensus 109 ~~DLs~~~g~~V~V~l~~~~~ 129 (275)
T TIGR03138 109 EKDLSAAAGAEVSVELFPLDE 129 (275)
T ss_pred HHHHHHHhCCceEEEEEChhh
Confidence 479999999999999999974
No 103
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=28.06 E-value=85 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=12.3
Q ss_pred EEecCCCCCccc-CCchhHHHHHH
Q 048697 43 VVFSQSGKPYTF-GHPSVEAVANR 65 (168)
Q Consensus 43 IvfSp~gk~~~f-~sPsv~~Vl~R 65 (168)
++|-|......| |||.|.++=+=
T Consensus 122 M~y~~e~~~ilFl~sP~v~~l~el 145 (219)
T PF07701_consen 122 MVYLEEWDSILFLGSPVVSSLEEL 145 (219)
T ss_dssp EEEETTTTEEEEEEEE---TT---
T ss_pred EEEecCCCeEEEEcccccCCHHHH
Confidence 677787777666 78875544333
No 104
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.57 E-value=3.5e+02 Score=22.96 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=25.1
Q ss_pred hHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQ 115 (168)
Q Consensus 59 v~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~ 115 (168)
++.+++-|.......+. ........++..++..++++++....+...-+.
T Consensus 150 ~n~~~~~y~~~~~~~~~-------~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKV-------EPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777764311000 001234556666666666666655554444443
No 105
>PF15119 APOC4: Apolipoprotein C4
Probab=27.23 E-value=38 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.3
Q ss_pred hhchhhHHHHHHHHh--hhhc
Q 048697 19 SKRRSWIYKNASELV--TLTG 37 (168)
Q Consensus 19 ~KRr~gL~KKa~ELs--~LC~ 37 (168)
..-|.+|++||+-|| +|||
T Consensus 76 ~sSkd~llnk~~sLCPrllC~ 96 (99)
T PF15119_consen 76 RSSKDSLLNKTHSLCPRLLCG 96 (99)
T ss_pred HHhHHHHHHHHHhhCchhhcc
Confidence 445789999999997 5776
No 106
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=26.82 E-value=1.3e+02 Score=21.77 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 048697 96 HNELRRQLDEEKEQEKILTQMRRGKETQ 123 (168)
Q Consensus 96 ~~~L~~~le~~k~~~~~l~~~~~~~~~~ 123 (168)
+..|++||++.++.++.+.+.++...|.
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGR 32 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGR 32 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCC
Confidence 3456777888788888888888866554
No 107
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.50 E-value=2.2e+02 Score=19.67 Aligned_cols=27 Identities=7% Similarity=-0.195 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhhcc
Q 048697 132 DEHNLQEQLQMDSAFMLGELDLLWKPQ 158 (168)
Q Consensus 132 ~~Ls~eeL~~L~~~Le~~L~~v~~~~~ 158 (168)
.+.+-+++.++...++..|.+.+.+++
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLG 58 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999988874
No 108
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=1.1e+02 Score=21.74 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
++...+..++.-|..+-+...++.+.|+..+..+.
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666666666666666665443
No 109
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=26.25 E-value=1.5e+02 Score=25.17 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhccccccccccC
Q 048697 106 EKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKPQLSKYIIEPA 167 (168)
Q Consensus 106 ~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~~~~~~~~~~ 167 (168)
+.++.+++....+....+.+|+. +++.|=-.|...|+.--.-..-+.-.-+.+|+||
T Consensus 151 Laek~Ek~e~drkK~a~~~~~~p-----~~l~Dk~Gl~~~l~rr~~g~~~e~e~~k~~i~pa 207 (449)
T KOG3896|consen 151 LAEKIEKAEKDRKKGASGKAWTP-----FHLKDKFGLQQMLDRRKKGLAKEPEMNKVDIAPA 207 (449)
T ss_pred HHHHHHhhHHHHhccccccccCc-----ccccccccchhhhhhhhhccccCccccccccccc
Confidence 33444555555554333336654 3444555666666654333332233334468876
No 110
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=26.24 E-value=26 Score=21.32 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 132 DEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 132 ~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
-+||.+||.+....+...|.+++++.
T Consensus 5 r~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 5 RELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 111
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.10 E-value=3.2e+02 Score=21.31 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
..........+++.++.-=.....++..+.........+-..+.+++.++|..........|......+
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l 101 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQL 101 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544455555555554432222355668899999999999888888888776655
No 112
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.00 E-value=2.4e+02 Score=19.77 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 048697 93 NQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFM 147 (168)
Q Consensus 93 ~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le 147 (168)
..+++-|+.++..+.+++..|+++..... ...|-++|.+|...+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk----------~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLK----------TLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhCCHHHHHHHHHhcc
Confidence 34556666666666666666665544221 2357788888877664
No 113
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=25.93 E-value=44 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=15.5
Q ss_pred hhhcCcEEEEEecCCCCCcc
Q 048697 34 TLTGSEIAIVVFSQSGKPYT 53 (168)
Q Consensus 34 ~LC~v~vavIvfSp~gk~~~ 53 (168)
.-|++.|-+++|||..+.|.
T Consensus 109 p~c~iKvL~LlYs~kk~~fl 128 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFL 128 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEEcCCCceEE
Confidence 46899999999999887653
No 114
>PRK09039 hypothetical protein; Validated
Probab=25.93 E-value=1.8e+02 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhH
Q 048697 136 LQEQLQMDSAFMLGEL 151 (168)
Q Consensus 136 ~eeL~~L~~~Le~~L~ 151 (168)
..+|..+...+-..|.
T Consensus 189 ~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 189 VQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3455555555544443
No 115
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=25.87 E-value=68 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccC
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFG 55 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~ 55 (168)
.+|.-.||++|+|||....|+|+--|
T Consensus 134 ~~l~~~~g~~v~vii~Dt~gr~~r~g 159 (448)
T PRK13294 134 AGLRERLGVDVAVVVTDTMGRAWRNG 159 (448)
T ss_pred HHHHHHHCCCEEEEEecCCCCccccC
Confidence 46778899999999999888765443
No 116
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.70 E-value=2e+02 Score=18.85 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQM 116 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~ 116 (168)
+..|+..+..|-..++..++.+++|...
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 117
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=25.59 E-value=50 Score=27.20 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=18.9
Q ss_pred hhhhcCcEEEEEecCCC--CCcccC
Q 048697 33 VTLTGSEIAIVVFSQSG--KPYTFG 55 (168)
Q Consensus 33 s~LC~v~vavIvfSp~g--k~~~f~ 55 (168)
+++-|.++||++|+++| |.|+..
T Consensus 68 ~~~~G~n~~i~ayG~tgSGKT~Tm~ 92 (341)
T cd01372 68 GLFEGYNATVLAYGQTGSGKTYTMG 92 (341)
T ss_pred HHhCCCccceeeecCCCCCCcEEec
Confidence 45789999999999975 877764
No 118
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=25.53 E-value=49 Score=21.02 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=15.6
Q ss_pred hcCcEEEEEecCCCCCccc
Q 048697 36 TGSEIAIVVFSQSGKPYTF 54 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~f 54 (168)
-|+++|-|.|.|....|+.
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 4899999999998776654
No 119
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=2.5e+02 Score=22.80 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhHhh
Q 048697 138 EQLQMDSAFMLGELDL 153 (168)
Q Consensus 138 eL~~L~~~Le~~L~~v 153 (168)
++..|...|+..-.+|
T Consensus 81 eik~l~~eI~~~~~~I 96 (265)
T COG3883 81 EIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 120
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=25.34 E-value=2e+02 Score=18.66 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc-cccc
Q 048697 92 LNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP-QLSK 161 (168)
Q Consensus 92 l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~-~~~~ 161 (168)
|..-+..|+.++.-.+-....|+...+... ..++...=..|...|+..+.++..+- |+++
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d----------~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMD----------PSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555321 24677777788888888888887765 5443
No 121
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=25.32 E-value=41 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=18.7
Q ss_pred hhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 35 LTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 35 LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
--||.+||+|||-+.+ | |.+++++=|..
T Consensus 90 yrgaqa~vLVFSTTDr-~-----SFea~~~w~~k 117 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR-Y-----SFEATLEWYNK 117 (246)
T ss_pred hccccceEEEEecccH-H-----HHHHHHHHHHH
Confidence 3599999999998764 2 34445555543
No 122
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=25.22 E-value=89 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhhhhcCcEEEEEecCC
Q 048697 23 SWIYKNASELVTLTGSEIAIVVFSQS 48 (168)
Q Consensus 23 ~gL~KKa~ELs~LC~v~vavIvfSp~ 48 (168)
+-|+++|-+++---|...+|+.|+|.
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHhhhhhhcccceEEEEcccC
Confidence 45899999999999999999999985
No 123
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=25.06 E-value=1.2e+02 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEecCCCC-CcccCCchhHHHHHHhhcCCCC
Q 048697 41 AIVVFSQSGK-PYTFGHPSVEAVANRFLGMNQL 72 (168)
Q Consensus 41 avIvfSp~gk-~~~f~sPsv~~Vl~Ry~~~~~~ 72 (168)
.+|...-.|. .+..+++++++++.+|......
T Consensus 64 ~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G~l 96 (103)
T PF08386_consen 64 RLVTVDGAGHGVYAGGSPCVDKAVDDYLLDGTL 96 (103)
T ss_pred eEEEEeccCcceecCCChHHHHHHHHHHHcCCC
Confidence 4455544454 3446789999999999886543
No 124
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.03 E-value=2.1e+02 Score=18.79 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQMRRGK 120 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~ 120 (168)
...+..++..+..++....++.+.++..+...
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666543
No 125
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.00 E-value=1.8e+02 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGK 120 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~ 120 (168)
......+++..|+.++++++.-|-+|=+.+|..
T Consensus 101 elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 101 ELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777777766666666666643
No 126
>PRK00182 tatB sec-independent translocase; Provisional
Probab=24.98 E-value=20 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 30 SELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
.||-++ +=||||||+| .++-..+ -.+...+..|+.
T Consensus 8 ~EllvI--lvIaLlVfGP-erLP~~~-r~lg~~ir~~R~ 42 (160)
T PRK00182 8 GEILLL--LIVGLIVIGP-ERLPRLI-EDVRAALLAART 42 (160)
T ss_pred HHHHHH--HHHHHHhcCc-hHHHHHH-HHHHHHHHHHHH
Confidence 366666 3468899999 4543332 135555555555
No 127
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.78 E-value=2.9e+02 Score=23.41 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLW 155 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~ 155 (168)
+...++.+++.+.++....+.+...+++..+...++ +..+ ..+|.++...||.....+..
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~-------V~~~-t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG-------VSER-TRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665555555555555543331 1111 23455555555555444443
No 128
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=24.49 E-value=2.8e+02 Score=22.14 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=28.3
Q ss_pred cccCCchhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 52 YTFGHPSVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMR 117 (168)
Q Consensus 52 ~~f~sPsv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~ 117 (168)
..-+-|++..++.|....- .........+..++..|+++...+..+...|+..+
T Consensus 199 ~~tpLP~L~~~~~rL~~~l------------~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 199 KITPLPSLSECLERLRESL------------SSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred ccCCCCchhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444577777777766532 00122344445555556666555555555555443
No 129
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=24.42 E-value=32 Score=28.91 Aligned_cols=41 Identities=34% Similarity=0.428 Sum_probs=29.0
Q ss_pred HHHHHHhhhhcCcEEE--EEecCCC-CC---------cccCCchhHHHHHHhh
Q 048697 27 KNASELVTLTGSEIAI--VVFSQSG-KP---------YTFGHPSVEAVANRFL 67 (168)
Q Consensus 27 KKa~ELs~LC~v~vav--IvfSp~g-k~---------~~f~sPsv~~Vl~Ry~ 67 (168)
+||+|||-+-||+|.. ||-|.+- +. ...|.+++.+|.+.|-
T Consensus 87 ~rA~~lS~~Lgv~Vs~dqviqSHsP~r~l~~~~~k~vLv~G~~~vr~vAegyG 139 (389)
T KOG1618|consen 87 SRAQELSALLGVEVSADQVIQSHSPFRLLVEYHYKRVLVVGQGSVREVAEGYG 139 (389)
T ss_pred hHHHHHHHhhCCccCHHHHHhhcChHHHHhhhhhceEEEecCCcHHHHhhccC
Confidence 6899999999999954 5544432 32 2347788888888773
No 130
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=24.06 E-value=57 Score=20.59 Aligned_cols=28 Identities=14% Similarity=-0.110 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++-+||.+||..-...|...|.+++++.
T Consensus 8 elr~ls~~eL~~~l~elk~elf~LRfq~ 35 (67)
T CHL00154 8 DIIDLTDSEISEEIIKTKKELFDLRLKK 35 (67)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666544
No 131
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.01 E-value=85 Score=18.65 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGE 150 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L 150 (168)
.+..+|.+||+..-..|+.-+
T Consensus 4 fLk~ls~~eL~~rl~~LD~~M 24 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEM 24 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHH
Confidence 456789999988777766544
No 132
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=23.87 E-value=2.8e+02 Score=19.95 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++++|+.+||.++...++..-..-..+.
T Consensus 91 ~iE~l~~~el~~~~~~~~~~~~~~~~~~ 118 (132)
T PF04120_consen 91 DIEDLTEEELEEIRKRYERLAEQARERH 118 (132)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 8899999999999999988755444333
No 133
>COG1438 ArgR Arginine repressor [Transcription]
Probab=23.75 E-value=42 Score=24.79 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.6
Q ss_pred HHHhhhhcCcEEEEEecC
Q 048697 30 SELVTLTGSEIAIVVFSQ 47 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp 47 (168)
.=|+|+||.|.++|++-.
T Consensus 118 eIlGTIaGdDTilVi~r~ 135 (150)
T COG1438 118 EILGTIAGDDTILVICRS 135 (150)
T ss_pred hhheeeeCCCeEEEEecC
Confidence 447899999999988644
No 134
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=23.49 E-value=63 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++-+||.+||.+....+...|..+++..
T Consensus 8 elr~ls~~eL~~~l~elk~eLf~LR~q~ 35 (69)
T PRK14549 8 EIREMSPEEREEKLEELKLELLKERAQA 35 (69)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665555443
No 135
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=23.41 E-value=1.3e+02 Score=18.64 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=16.9
Q ss_pred hhhhHHHHHHH----HHHHHHHHHHHHHHHHH
Q 048697 87 VRINELNQQHN----ELRRQLDEEKEQEKILT 114 (168)
Q Consensus 87 ~~~~~l~~~~~----~L~~~le~~k~~~~~l~ 114 (168)
..+.+|+.+.. .|.++|+.+++++..|.
T Consensus 10 ~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 10 KSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 46778887754 45555655555555544
No 136
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=23.04 E-value=73 Score=21.25 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048697 97 NELRRQLDEEKEQEKILT 114 (168)
Q Consensus 97 ~~L~~~le~~k~~~~~l~ 114 (168)
++|.+++...++..-.|+
T Consensus 11 eEL~e~L~elkkELf~LR 28 (87)
T PRK00461 11 EELEKLVIELKAELFTLR 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 137
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.99 E-value=2.9e+02 Score=19.70 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred chhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCH
Q 048697 57 PSVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNL 136 (168)
Q Consensus 57 Psv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~ 136 (168)
=.++.|+..|.... .-...+.......+.+++........+...+.. .-..+|.
T Consensus 22 Vd~~~v~~~~~~~k----------------~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~----------~~~~ls~ 75 (158)
T PF03938_consen 22 VDVDKVFQESPAGK----------------DAQAKLQEKFKALQKELQAKQKELQKLQQKLQS----------QKATLSE 75 (158)
T ss_dssp E-HHHHHHHHHHHH----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------S----SS
T ss_pred eeHHHHHHhCHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhhccch
Confidence 34778888875522 233455556666666666655555555544442 2236777
Q ss_pred HHHHHHHHHHHHhhHhh
Q 048697 137 QEQLQMDSAFMLGELDL 153 (168)
Q Consensus 137 eeL~~L~~~Le~~L~~v 153 (168)
++.......|......+
T Consensus 76 ~~~~~~~~~l~~~~~~l 92 (158)
T PF03938_consen 76 EERQKRQQELQQKEQEL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 76666666665544433
No 138
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.99 E-value=2.1e+02 Score=18.14 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
...+..++..++++++..+.++..|+....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666665544
No 139
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=22.92 E-value=1.2e+02 Score=18.88 Aligned_cols=29 Identities=3% Similarity=-0.166 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhcc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKPQ 158 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~ 158 (168)
++.+|+.+++.++...+...+..++....
T Consensus 31 ~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 59 (86)
T cd00468 31 TLPDLDEALLADLVITAQRVAAELEKHGN 59 (86)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788998888888888887777754443
No 140
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=22.89 E-value=75 Score=18.65 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=22.7
Q ss_pred hhhhcCcEEEEEecCCCCCcccCCchhHHHHH
Q 048697 33 VTLTGSEIAIVVFSQSGKPYTFGHPSVEAVAN 64 (168)
Q Consensus 33 s~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~ 64 (168)
+++=.+..+|+|+. +| -+.+++|...+++.
T Consensus 5 ~l~~~~~~~i~i~d-~~-~i~~~N~~~~~l~g 34 (64)
T PF13188_consen 5 SLFDNSPDGILIID-GG-RIIYVNPAFEELFG 34 (64)
T ss_dssp HHHCCSSSEEEEEE-TS-BEEEE-HHHHHHHC
T ss_pred HHHHcCccceEEEE-CC-ChHHhhHHHHHHhC
Confidence 34557888999999 55 78899998777776
No 141
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.44 E-value=1.6e+02 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 048697 89 INELNQQHNELRRQLDEEK 107 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k 107 (168)
+..+..++++|++++....
T Consensus 4 ~s~I~~eIekLqe~lk~~e 22 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAE 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456667777777665543
No 142
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.42 E-value=3.9e+02 Score=21.03 Aligned_cols=51 Identities=10% Similarity=0.268 Sum_probs=33.0
Q ss_pred hhHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 58 SVEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 58 sv~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
.+++.++........... .-..+++..+|..+..+++..++..+.|.+.+.
T Consensus 106 ~~~~~l~~l~~~g~v~~~----------~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 106 KFDSFLDELSELGKVTSR----------NISSEDVTEQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHhccCceeee----------eccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888765422111 123456667788888888877777777776665
No 143
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=22.39 E-value=2.3e+02 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.6
Q ss_pred ecCCCCCcccCCchhHHHHHHhhcCC
Q 048697 45 FSQSGKPYTFGHPSVEAVANRFLGMN 70 (168)
Q Consensus 45 fSp~gk~~~f~sPsv~~Vl~Ry~~~~ 70 (168)
||-..-+-+-|=|+..+.+++|...-
T Consensus 14 Fs~qdsLPSLPlPeLeETleKYl~s~ 39 (609)
T KOG3718|consen 14 FSFQDSLPSLPLPELEETLEKYLSSI 39 (609)
T ss_pred ccccccCCCCCCchHHHHHHHHHHhc
Confidence 44444455556689999999999854
No 144
>PRK00064 recF recombination protein F; Reviewed
Probab=22.35 E-value=2.8e+02 Score=23.19 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=24.4
Q ss_pred HHHHHhhhhcCcEEEEEecCCCCCcccCCch-hHHHHHHhhc
Q 048697 28 NASELVTLTGSEIAIVVFSQSGKPYTFGHPS-VEAVANRFLG 68 (168)
Q Consensus 28 Ka~ELs~LC~v~vavIvfSp~gk~~~f~sPs-v~~Vl~Ry~~ 68 (168)
++++|.-+. .+|+|+|.+--...++|+ -...||++..
T Consensus 104 ~~~~l~~~~----~~v~~~p~~~~l~~~~p~~RR~fLD~~~~ 141 (361)
T PRK00064 104 KLAELAGLL----NVVLFTPEDLRLVKGGPSERRRFLDRLLF 141 (361)
T ss_pred CHHHHhhhc----cEEEEccchhhhhcCCHHHHHHHHHHHHh
Confidence 455554443 389999988777778887 4456666554
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.29 E-value=2.4e+02 Score=21.82 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=2.8
Q ss_pred chhHHHH
Q 048697 57 PSVEAVA 63 (168)
Q Consensus 57 Psv~~Vl 63 (168)
|++...+
T Consensus 89 p~~~~rl 95 (206)
T PRK10884 89 PSLRTRV 95 (206)
T ss_pred ccHHHHH
Confidence 4433333
No 146
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.25 E-value=23 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQM 116 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~ 116 (168)
.|+..-..+.-|+-+++.+|+++..|.+.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555543
No 147
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=22.15 E-value=87 Score=21.43 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhcCcEEEEEecCCCC
Q 048697 26 YKNASELVTLTGSEIAIVVFSQSGK 50 (168)
Q Consensus 26 ~KKa~ELs~LC~v~vavIvfSp~gk 50 (168)
-.=|.+++.-+|++ |+|||+.+|.
T Consensus 5 a~aa~~~A~~~~ak-~Ivv~T~sG~ 28 (117)
T PF02887_consen 5 ARAAVELAEDLNAK-AIVVFTESGR 28 (117)
T ss_dssp HHHHHHHHHHHTES-EEEEE-SSSH
T ss_pred HHHHHHHHHhcCCC-EEEEECCCch
Confidence 34467888888866 7888999885
No 148
>PRK11239 hypothetical protein; Provisional
Probab=22.12 E-value=3.9e+02 Score=20.96 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=27.1
Q ss_pred HHHhhhh-----cCcEEEEEecCCCCCcccCC-chhHHHHHHhhcCC
Q 048697 30 SELVTLT-----GSEIAIVVFSQSGKPYTFGH-PSVEAVANRFLGMN 70 (168)
Q Consensus 30 ~ELs~LC-----~v~vavIvfSp~gk~~~f~s-Psv~~Vl~Ry~~~~ 70 (168)
.|+++|| |..-+-=+-+.+++.+.|.. .+|+.++++.....
T Consensus 98 ~~~All~~LlLRGPQT~gELRtRs~Rl~~F~dv~~Ve~~L~~L~~r~ 144 (215)
T PRK11239 98 AEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANRE 144 (215)
T ss_pred HHHHHHHHHHhcCCCChHHHHHhHhcCCcCCCHHHHHHHHHHHHhcc
Confidence 4566665 33333333444678999998 56999999887653
No 149
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.02 E-value=3.6e+02 Score=20.45 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=32.6
Q ss_pred hhHHHHHHhhcCCCCCCCc--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048697 58 SVEAVANRFLGMNQLPNDN--IHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGK 120 (168)
Q Consensus 58 sv~~Vl~Ry~~~~~~~~~~--~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~ 120 (168)
+|++||.-.-+-.-...++ +.+.-=.+.......+...+..|+++++..+.+...++..+...
T Consensus 31 ~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 31 SVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred hHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777766532111111 00000011233445566667777777777777776766665543
No 150
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.82 E-value=2.7e+02 Score=18.97 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
++..+..+...+.+++.+..++...+...+.
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555554443
No 151
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=21.69 E-value=42 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhhh-cCcEEEEEe-cCCC-CCcccCCch--hHHHHHHhh
Q 048697 24 WIYKNASELVTLT-GSEIAIVVF-SQSG-KPYTFGHPS--VEAVANRFL 67 (168)
Q Consensus 24 gL~KKa~ELs~LC-~v~vavIvf-Sp~g-k~~~f~sPs--v~~Vl~Ry~ 67 (168)
.-+.+..+|.||. +.++++-++ |+++ ..|.+|+|+ .....+.|.
T Consensus 199 ~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~ 247 (300)
T TIGR01001 199 EDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYV 247 (300)
T ss_pred HHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHH
Confidence 3456678999995 446776554 4555 578999997 888888887
No 152
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=21.67 E-value=89 Score=19.68 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=21.0
Q ss_pred HhhhhcCcE--EEEEecCCCCCcccCC----chhHHHHHHhhcCC
Q 048697 32 LVTLTGSEI--AIVVFSQSGKPYTFGH----PSVEAVANRFLGMN 70 (168)
Q Consensus 32 Ls~LC~v~v--avIvfSp~gk~~~f~s----Psv~~Vl~Ry~~~~ 70 (168)
||+.++-.+ ..|...++| .|.+.. |++.++|+.|...+
T Consensus 39 Lsv~~~~~~~h~~I~~~~~~-~~~l~~~~~F~sl~eLI~~y~~~~ 82 (84)
T smart00252 39 LSVRVKGKVKHYRIRRNEDG-KFYLDGGRKFPSLVELVEHYQKNS 82 (84)
T ss_pred EEEEECCEEEEEEEEECCCC-cEEECCCCccCCHHHHHHHHhhCC
Confidence 444544333 233333333 344433 67999999998744
No 153
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.63 E-value=1.8e+02 Score=16.78 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 90 NELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 90 ~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
..|...|+.|..+-+.+.+.++.|.....
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555555555554443
No 154
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.53 E-value=2.5e+02 Score=18.55 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=34.0
Q ss_pred hHHHHHHhhcCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHH
Q 048697 59 VEAVANRFLGMNQLPNDNIHSLVVGHRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQE 138 (168)
Q Consensus 59 v~~Vl~Ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~ee 138 (168)
+..++.+|........ ...++.....+|...+...+...+.|++.+......+. .+ +|+..|
T Consensus 17 l~~~~~~~~~~~~~~~-------------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~----kF-~l~~~E 78 (97)
T PF09177_consen 17 LESLYRRWQRLRSDTS-------------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPS----KF-NLSEEE 78 (97)
T ss_dssp HHHHHHHHHHHTTHCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HH-T-HHHH
T ss_pred HHHHHHHHHHhcccCC-------------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----cc-CCCHHH
Confidence 6677788877653322 11222223333444444444444455554443222111 23 677777
Q ss_pred HHHHHHHHHHh
Q 048697 139 QLQMDSAFMLG 149 (168)
Q Consensus 139 L~~L~~~Le~~ 149 (168)
|..-..-+...
T Consensus 79 i~~Rr~fv~~~ 89 (97)
T PF09177_consen 79 ISRRRQFVSAI 89 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76655555544
No 155
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=59 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=14.1
Q ss_pred hcCcEEEEEecCCCCCcc
Q 048697 36 TGSEIAIVVFSQSGKPYT 53 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~ 53 (168)
.|-|=-+.||||.|++|-
T Consensus 7 agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CCccceEEEECCCceEEe
Confidence 355667899999999873
No 156
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.23 E-value=4.1e+02 Score=21.94 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=38.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhcccc
Q 048697 85 RQVRINELNQQHNELRRQLDEEKEQEKILTQMRR----GKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKPQLS 160 (168)
Q Consensus 85 ~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~----~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~~~~ 160 (168)
.+.++..|..+-++|..++.+++...+..+...+ ....+..--+.++++ +.-.+.++..-=...+++.++++|.+
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En-~d~~~~d~qrdanrqisd~KfKl~Ka 295 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLEN-TDLHFIDLQRDANRQISDYKFKLQKA 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccccccccc-ccccHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666554443333 111110000122333 33344445544556677777777654
No 157
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=21.21 E-value=18 Score=29.73 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhhhcC-cEEEEE-ecCCC-CCcccCCch--hHHHHHHhhc
Q 048697 23 SWIYKNASELVTLTGS-EIAIVV-FSQSG-KPYTFGHPS--VEAVANRFLG 68 (168)
Q Consensus 23 ~gL~KKa~ELs~LC~v-~vavIv-fSp~g-k~~~f~sPs--v~~Vl~Ry~~ 68 (168)
..=++++.+|.||.+. ++++-+ .|++| ..|.+|+|+ .+...+.|.+
T Consensus 198 ~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~R 248 (298)
T PF04204_consen 198 RDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRR 248 (298)
T ss_dssp HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHH
T ss_pred HHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHH
Confidence 3345778999999864 566644 45666 578999997 7788888865
No 158
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.98 E-value=89 Score=27.62 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
+.++.++ ++++|++||++++++...++.....
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccch
No 159
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.78 E-value=3.4e+02 Score=19.69 Aligned_cols=22 Identities=9% Similarity=-0.156 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHhhhhhc
Q 048697 136 LQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 136 ~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
.+||..+...|...|..+....
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~ 142 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNL 142 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccH
Confidence 6788888888886666555544
No 160
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=20.65 E-value=1.3e+02 Score=19.17 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhhhhcCcEEEEEecCCCCCcccC
Q 048697 23 SWIYKNASELVTLTGSEIAIVVFSQSGKPYTFG 55 (168)
Q Consensus 23 ~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~ 55 (168)
..+..+--+|=++-|++|-++=.+|.|.|..+.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 558899999999999999999999999887663
No 161
>PRK00708 sec-independent translocase; Provisional
Probab=20.46 E-value=4e+02 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=11.5
Q ss_pred HHHhhhhcCcEEEEEecCC
Q 048697 30 SELVTLTGSEIAIVVFSQS 48 (168)
Q Consensus 30 ~ELs~LC~v~vavIvfSp~ 48 (168)
.||-++ +=|+||||+|.
T Consensus 7 ~ELlvI--~vVaLvV~GPk 23 (209)
T PRK00708 7 SELLVI--AIVLIVVVGPK 23 (209)
T ss_pred HHHHHH--HHHHHhhcCch
Confidence 466655 33588999984
No 162
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.44 E-value=2.3e+02 Score=21.01 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 048697 101 RQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFM 147 (168)
Q Consensus 101 ~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le 147 (168)
+-....+++...++..+...... .+++.|+++|+....-.+.
T Consensus 103 ~~~~~s~~~i~~l~keL~~i~~~-----~P~e~mT~dd~~~a~Pe~~ 144 (161)
T PF05873_consen 103 EFEAESKKRIAELEKELANIESA-----RPFEQMTVDDYAAAFPEIA 144 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----CChHhCCHHHHHHhCcccc
Confidence 33344455566666666654443 3889999999887655443
Done!