Query 048697
Match_columns 168
No_of_seqs 116 out of 1327
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 6.2E-35 2.1E-39 195.2 5.6 69 8-76 1-78 (90)
2 1egw_A MADS box transcription 100.0 7E-35 2.4E-39 190.5 3.8 64 8-71 1-73 (77)
3 1hbx_A SRF, serum response fac 100.0 1.1E-34 3.7E-39 194.8 2.0 67 2-68 5-80 (92)
4 1mnm_A Protein (MCM1 transcrip 100.0 1.9E-34 6.6E-39 196.0 3.0 66 3-68 12-86 (100)
5 1k6o_B SRF, serum response fac 100.0 4.4E-34 1.5E-38 195.4 1.8 64 3-66 5-77 (103)
6 3tnu_B Keratin, type II cytosk 62.5 9.4 0.00032 26.2 4.0 64 86-157 35-98 (129)
7 2yy0_A C-MYC-binding protein; 61.2 21 0.00073 20.6 5.3 31 88-118 20-50 (53)
8 1nkp_B MAX protein, MYC proto- 60.5 24 0.00083 22.0 5.5 35 87-121 47-81 (83)
9 2w6b_A RHO guanine nucleotide 58.9 24 0.00084 20.5 5.2 33 86-118 16-48 (56)
10 1s94_A S-syntaxin; three helix 58.1 48 0.0016 23.6 7.5 65 88-157 37-101 (180)
11 1m2d_A [2Fe-2S] ferredoxin; th 58.0 5.2 0.00018 26.5 2.0 32 36-68 59-91 (110)
12 1a93_B MAX protein, coiled coi 55.8 21 0.00071 18.8 4.0 28 92-119 5-32 (34)
13 3tnu_A Keratin, type I cytoske 55.7 10 0.00035 26.0 3.3 62 87-156 38-99 (131)
14 1l8d_A DNA double-strand break 54.3 21 0.00071 23.4 4.6 31 88-118 72-102 (112)
15 2l5g_B Putative uncharacterize 53.7 26 0.00089 19.3 4.9 29 87-115 9-37 (42)
16 1j1d_C Troponin I, TNI; THIN f 53.3 53 0.0018 22.7 7.5 25 130-154 54-78 (133)
17 2rpa_A Katanin P60 ATPase-cont 53.2 7.7 0.00026 24.5 2.1 34 26-70 16-49 (78)
18 2phn_A F420-0:gamma-glutamyl l 43.3 4.7 0.00016 31.3 -0.1 28 31-58 138-165 (254)
19 2oa5_A Hypothetical protein BQ 42.8 73 0.0025 21.3 6.1 54 96-153 10-63 (110)
20 1j1e_C Troponin I, TNI; THIN f 42.5 87 0.003 22.8 6.6 25 130-154 54-78 (180)
21 2ky6_A Mediator of RNA polymer 41.9 21 0.0007 25.8 3.0 37 33-69 116-160 (166)
22 3efg_A Protein SLYX homolog; x 39.7 43 0.0015 20.9 4.0 36 84-119 25-60 (78)
23 4dnd_A Syntaxin-10, SYN10; str 39.7 48 0.0016 22.7 4.6 55 98-157 71-128 (130)
24 2ke4_A CDC42-interacting prote 38.5 80 0.0027 20.5 5.9 61 86-149 14-74 (98)
25 1dd4_C 50S ribosomal protein L 38.2 23 0.00077 19.3 2.2 21 130-150 9-29 (40)
26 1ytz_T Troponin T; muscle, THI 37.6 88 0.003 20.7 5.9 26 130-155 38-63 (107)
27 2z5i_A TM, general control pro 36.7 60 0.0021 18.5 5.1 34 86-119 11-44 (52)
28 1t6f_A Geminin; coiled-coil, c 36.5 49 0.0017 17.5 3.9 25 90-114 10-34 (37)
29 2g0i_A Hypothetical protein SM 35.3 8.8 0.0003 27.1 0.2 21 1-24 24-45 (145)
30 3l4f_A RHO guanine nucleotide 34.9 33 0.0011 20.5 2.7 34 86-119 13-46 (61)
31 1nkp_A C-MYC, MYC proto-oncoge 34.9 86 0.0029 19.8 5.2 34 87-120 52-85 (88)
32 3jrn_A AT1G72930 protein; TIR 33.0 22 0.00075 25.8 2.1 34 35-68 60-93 (176)
33 3twe_A Alpha4H; unknown functi 32.7 45 0.0016 15.9 4.0 16 91-106 5-20 (27)
34 3hvz_A Uncharacterized protein 30.0 32 0.0011 21.3 2.2 24 41-64 7-31 (78)
35 3rmq_A Uncharacterized protein 29.7 9.5 0.00032 25.7 -0.4 13 30-42 30-42 (116)
36 1nlw_A MAD protein, MAX dimeri 28.8 1.1E+02 0.0036 19.0 5.1 32 87-118 47-78 (80)
37 1r1p_A GRB2-related adaptor pr 27.2 51 0.0017 21.0 3.0 40 31-70 46-89 (100)
38 2k1v_A Insulin-like peptide IN 26.4 18 0.00063 17.7 0.4 10 29-38 14-23 (26)
39 3cvf_A Homer-3, homer protein 26.3 1E+02 0.0034 19.3 4.0 54 88-149 21-74 (79)
40 2jo8_A Serine/threonine-protei 25.6 51 0.0018 18.9 2.3 22 130-151 6-27 (51)
41 1rja_A Tyrosine-protein kinase 25.1 44 0.0015 21.2 2.3 41 31-71 41-86 (100)
42 3mud_A DNA repair protein XRCC 25.0 1.3E+02 0.0043 21.9 4.9 33 86-118 134-166 (175)
43 1j1d_B Troponin T, TNT; THIN f 24.8 40 0.0014 22.4 2.0 26 130-155 38-63 (106)
44 1z56_A Ligase interacting fact 23.9 84 0.0029 24.0 3.9 49 15-70 126-177 (246)
45 1jyr_A Growth factor receptor- 23.8 43 0.0015 21.2 2.0 40 31-70 41-84 (96)
46 1uii_A Geminin; human, DNA rep 23.1 1.5E+02 0.0051 18.7 5.2 30 88-117 47-76 (83)
47 3u5e_h 60S ribosomal protein L 23.1 56 0.0019 22.2 2.5 27 131-157 9-35 (120)
48 3r8s_Y 50S ribosomal protein L 23.0 46 0.0016 19.8 1.9 28 130-157 5-32 (63)
49 2zjr_V 50S ribosomal protein L 22.9 69 0.0024 19.2 2.8 28 130-157 5-32 (67)
50 2dm0_A Tyrosine-protein kinase 22.8 56 0.0019 21.7 2.6 40 31-70 53-103 (125)
51 2pnv_A Small conductance calci 22.6 1.1E+02 0.0036 16.9 5.2 31 88-118 10-40 (43)
52 2dhx_A Poly (ADP-ribose) polym 22.6 35 0.0012 22.6 1.4 39 15-65 26-66 (104)
53 1zav_U 50S ribosomal protein L 22.5 69 0.0024 16.1 2.2 19 131-149 10-28 (30)
54 2wg5_A General control protein 22.4 1.1E+02 0.0039 20.0 4.0 27 88-114 8-34 (109)
55 3hh0_A Transcriptional regulat 22.2 1.9E+02 0.0066 19.7 6.2 52 87-146 80-131 (146)
56 3cve_A Homer protein homolog 1 22.1 1.1E+02 0.0038 18.7 3.6 53 88-148 15-67 (72)
57 3nr7_A DNA-binding protein H-N 21.8 1.6E+02 0.0054 18.6 8.4 12 132-143 71-82 (86)
58 1wlq_A Geminin; coiled-coil; 2 21.5 1.6E+02 0.0055 18.6 4.3 28 89-116 40-67 (83)
59 3fg8_A Uncharacterized protein 21.3 41 0.0014 21.0 1.6 31 33-64 16-46 (118)
60 3o0k_A Aldo/keto reductase; ss 21.1 70 0.0024 24.5 3.2 42 21-68 192-233 (283)
61 2vlg_A Sporulation kinase A; h 21.1 57 0.002 20.8 2.3 27 37-64 7-33 (111)
62 3l4q_C Phosphatidylinositol 3- 21.0 1.2E+02 0.0042 21.8 4.1 33 86-118 102-134 (170)
63 2kmm_A Guanosine-3',5'-BIS(dip 20.8 79 0.0027 18.4 2.8 25 42-66 3-28 (73)
64 2cly_B ATP synthase D chain, m 20.7 2E+02 0.0067 20.3 5.2 41 100-145 101-141 (160)
65 1fxk_C Protein (prefoldin); ar 20.6 1.5E+02 0.0052 19.7 4.5 32 88-119 96-127 (133)
66 2zxx_A Geminin; coiled-coil, c 20.3 1.4E+02 0.0047 18.7 3.8 25 90-114 37-61 (79)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=6.2e-35 Score=195.23 Aligned_cols=69 Identities=30% Similarity=0.540 Sum_probs=64.9
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhcCCCCCCCc
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMNQLPNDN 76 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~~~~~~~~~ 76 (168)
||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence 8999999 99999999999999999999999999999999999999999999999999999987655544
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=7e-35 Score=190.47 Aligned_cols=64 Identities=33% Similarity=0.591 Sum_probs=60.5
Q ss_pred Cccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhcCCC
Q 048697 8 GRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMNQ 71 (168)
Q Consensus 8 gr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~~~~ 71 (168)
||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 7899999 999999999999999999999999999999999999999999999999999998653
No 3
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.1e-34 Score=194.84 Aligned_cols=67 Identities=43% Similarity=0.640 Sum_probs=63.4
Q ss_pred CccccCCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 2 AAKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 2 ~~~~~mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
.+|++|||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|++|+++.||++|..
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 4789999999998 999999999999999999999999999999999999999999999999997754
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.9e-34 Score=196.00 Aligned_cols=66 Identities=41% Similarity=0.631 Sum_probs=61.8
Q ss_pred ccccCCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 3 ~~~~mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
++++|||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 578999999999 999999999999999999999999999999999999999999999999999975
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.98 E-value=4.4e-34 Score=195.41 Aligned_cols=64 Identities=44% Similarity=0.640 Sum_probs=62.0
Q ss_pred ccccCCccceee---------eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHh
Q 048697 3 AKKTKGRQKIEM---------IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRF 66 (168)
Q Consensus 3 ~~~~mgr~ki~i---------~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry 66 (168)
+|++|||+||+| +|||+|||+||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus 5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 688999999998 9999999999999999999999999999999999999999999999999974
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.54 E-value=9.4 Score=26.16 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=44.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
...+.+++..+..|..+++..+..+..|+..+...... .++.+.+++.....||..|.+++..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~--------~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR--------GELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678888899999999999998888888777654332 23455566666666666666655543
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.20 E-value=21 Score=20.59 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
.+..|..+...|+.+++.++++++.+...+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777888888888877777777776554
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.47 E-value=24 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKE 121 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~ 121 (168)
+.+..|..+...|..+++.++.++..|+..+....
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888888888888887776543
No 9
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.89 E-value=24 Score=20.53 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
.+.+++|+++..+|.+-++.+.+-.+.|+...+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777666655555555544
No 10
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=58.06 E-value=48 Score=23.60 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
.+..+-.++..++..|+........|+..+....+.+ .-+.---.+|..+...+-..-..++.++
T Consensus 37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~-----~~~~~~k~~le~l~~~i~~~a~~ik~~L 101 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAP-----QTDDQMKEELEELMTDIKRTANKVRGKL 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888777777777666533321 1122233566666665555555554444
No 11
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=58.03 E-value=5.2 Score=26.47 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=22.8
Q ss_pred hcCcEEEEEecCCCCCcccCCch-hHHHHHHhhc
Q 048697 36 TGSEIAIVVFSQSGKPYTFGHPS-VEAVANRFLG 68 (168)
Q Consensus 36 C~v~vavIvfSp~gk~~~f~sPs-v~~Vl~Ry~~ 68 (168)
|+---.|+|+ |+|..|...+|. +.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4433445566 888777777885 9999999764
No 12
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.76 E-value=21 Score=18.77 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 92 LNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 92 l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
+.......+++++.+++++..|+..++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3445556677888888888888877663
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.69 E-value=10 Score=26.05 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhhhhh
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDLLWK 156 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v~~~ 156 (168)
..+.+++..+..|..+++..+..+..|+..+...... .++.+++++.....||..|.+++..
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~--------~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR--------YCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999998888888888776644332 2344555666666666666655544
No 14
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.33 E-value=21 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
.+..+..++..+..++...+...+.+...++
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555555443
No 15
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.75 E-value=26 Score=19.28 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQ 115 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~ 115 (168)
..++..+.++.+..+++...+++.+.|.+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555554
No 16
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=53.30 E-value=53 Score=22.73 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLL 154 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~ 154 (168)
++++||.++|+++-..|...+..++
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LE 78 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVD 78 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998877777665544
No 17
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.22 E-value=7.7 Score=24.47 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhcCC
Q 048697 26 YKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLGMN 70 (168)
Q Consensus 26 ~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~~~ 70 (168)
.|+|.|.+.+++=|.|++.|.. +..-|+||...-
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 5899999999999999888764 788889998754
No 18
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=43.31 E-value=4.7 Score=31.25 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=23.0
Q ss_pred HHhhhhcCcEEEEEecCCCCCcccCCch
Q 048697 31 ELVTLTGSEIAIVVFSQSGKPYTFGHPS 58 (168)
Q Consensus 31 ELs~LC~v~vavIvfSp~gk~~~f~sPs 58 (168)
+|.-.+|++|+|||+.+.|+++-.+.+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4556789999999999999988776653
No 19
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=42.80 E-value=73 Score=21.28 Aligned_cols=54 Identities=9% Similarity=-0.003 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhHhh
Q 048697 96 HNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLGELDL 153 (168)
Q Consensus 96 ~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~L~~v 153 (168)
+++|.++|.+++-.|+.|.+.++.- |+. +++-.-|+..+=..+..+.-..|...
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~-g~~---~p~d~~LTp~qKea~I~s~~~~Lss~ 63 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSS-GAV---SSDDSILTAAKRESIIVSSSRALGAV 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------CCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCC---CCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777888777642 432 24556799999888888777776643
No 20
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=42.49 E-value=87 Score=22.82 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLL 154 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~ 154 (168)
++++||.++|+++-..|...+..+.
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LE 78 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVD 78 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998877777665544
No 21
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=41.90 E-value=21 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=26.8
Q ss_pred hhhhcCcEEEEEecCCCCCcccCCch--------hHHHHHHhhcC
Q 048697 33 VTLTGSEIAIVVFSQSGKPYTFGHPS--------VEAVANRFLGM 69 (168)
Q Consensus 33 s~LC~v~vavIvfSp~gk~~~f~sPs--------v~~Vl~Ry~~~ 69 (168)
+.-|++.|-+++|||..+.|.==-|. ++.||+.++..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 34599999999999988876432232 77888887763
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.73 E-value=43 Score=20.86 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=23.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 84 HRQVRINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
+-++.+..|+..+...+.+++....+...|...++.
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776666665554
No 23
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=39.66 E-value=48 Score=22.73 Aligned_cols=55 Identities=13% Similarity=-0.033 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHH---HHHHHHHHHhhHhhhhhc
Q 048697 98 ELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQ---LQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 98 ~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL---~~L~~~Le~~L~~v~~~~ 157 (168)
+|+.-+...+...+.|++.+......+. .+ +|+..|| ..|...+...+.+++..+
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~np~----kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEANPG----KF-KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH----HH-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHH----hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445544443222211 22 3665555 456666666666665543
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.50 E-value=80 Score=20.52 Aligned_cols=61 Identities=21% Similarity=0.162 Sum_probs=39.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLG 149 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~ 149 (168)
..+...|..++.+|+.+++++....+.|.+....+...+ -++ +...+ ..+|.+....|+..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP-~~G-D~~s~-~~~L~e~~~kid~L 74 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTP-QMG-DPASL-EPQIAETLSNIERL 74 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCG-GGC-CGGGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccC-CHHHH-HHHHHHHHHHHHHH
Confidence 346778899999999999999888777777766544432 222 22223 55666655555443
No 25
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=38.21 E-value=23 Score=19.30 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGE 150 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L 150 (168)
.+.+|++-|+.+|...|++.+
T Consensus 9 ~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHH
Confidence 457899999999999999875
No 26
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=37.63 E-value=88 Score=20.73 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLW 155 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~ 155 (168)
++++||.++|+++-..|...+..++.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEe 63 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQT 63 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998888777665543
No 27
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.68 E-value=60 Score=18.53 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
...+..|...+..|..++...+.+...+...+..
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4468889999999999999888888888776664
No 28
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.45 E-value=49 Score=17.47 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 90 NELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 90 ~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
..|+..++.-.+++..++++++.|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3556666666667777777666665
No 29
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A
Probab=35.35 E-value=8.8 Score=27.14 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=8.5
Q ss_pred CCccccCCccceee-eeeehhchhh
Q 048697 1 MAAKKTKGRQKIEM-IITFSKRRSW 24 (168)
Q Consensus 1 ~~~~~~mgr~ki~i-~vTf~KRr~g 24 (168)
|++...|||+ .| +|||.+ ++|
T Consensus 24 ~~~~~~~~~~--~MIkV~i~~-~~g 45 (145)
T 2g0i_A 24 MTGGQQMGRG--SMIQATFIR-RKG 45 (145)
T ss_dssp ------------CCEEEEEEE-ETT
T ss_pred ccCccccCCC--ceEEEEEEE-cCC
Confidence 7788999999 55 999987 766
No 30
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=34.92 E-value=33 Score=20.46 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
.+.+++|+++...+..-++.+.+..+.|++..+.
T Consensus 13 kDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk 46 (61)
T 3l4f_A 13 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777776666666665553
No 31
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.88 E-value=86 Score=19.78 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGK 120 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~ 120 (168)
+.|..|..+...+..+++.++.++..|...+...
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777766543
No 32
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=32.98 E-value=22 Score=25.80 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=26.1
Q ss_pred hhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 35 LTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 35 LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
+-++.++||||||+--.-.||--++..|+++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~ 93 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEKK 93 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhcc
Confidence 4578899999999866666666678888887654
No 33
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.68 E-value=45 Score=15.94 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 048697 91 ELNQQHNELRRQLDEE 106 (168)
Q Consensus 91 ~l~~~~~~L~~~le~~ 106 (168)
+|..+++.|++.+.+.
T Consensus 5 elykeledlqerlrkl 20 (27)
T 3twe_A 5 ELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 34
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.03 E-value=32 Score=21.35 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=17.9
Q ss_pred EEEEecCCCCCcccCCch-hHHHHH
Q 048697 41 AIVVFSQSGKPYTFGHPS-VEAVAN 64 (168)
Q Consensus 41 avIvfSp~gk~~~f~sPs-v~~Vl~ 64 (168)
-+.||.|+|..+.++..+ +.+++.
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 478999999999987643 555543
No 35
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=29.65 E-value=9.5 Score=25.74 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHhhhhcCcEEE
Q 048697 30 SELVTLTGSEIAI 42 (168)
Q Consensus 30 ~ELs~LC~v~vav 42 (168)
..+.+|||++|..
T Consensus 30 ~~ftaLCG~~VTp 42 (116)
T 3rmq_A 30 RPFTALCGETVTP 42 (116)
T ss_dssp CCEECTTSCEECC
T ss_pred CccccccCCeecC
Confidence 3578999999864
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.77 E-value=1.1e+02 Score=18.99 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
+.|..|..+...+..+.+.++.++..|+..+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777788777777777777766544
No 37
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=27.22 E-value=51 Score=20.95 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHhhhhcCcE--EEEEecCCCCCcccCC--chhHHHHHHhhcCC
Q 048697 31 ELVTLTGSEI--AIVVFSQSGKPYTFGH--PSVEAVANRFLGMN 70 (168)
Q Consensus 31 ELs~LC~v~v--avIvfSp~gk~~~f~s--Psv~~Vl~Ry~~~~ 70 (168)
=||+.++-.| ..|...++|..+..+. ||+.++|+.|...+
T Consensus 46 ~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~ 89 (100)
T 1r1p_A 46 SISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTS 89 (100)
T ss_dssp EEEEECSSSEEEEECEECTTCCEESSSCEESSHHHHHHHHTTSC
T ss_pred EEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHHHHHHHhCC
Confidence 4666665444 4455556665443332 68999999999865
No 38
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=26.40 E-value=18 Score=17.71 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=6.6
Q ss_pred HHHHhhhhcC
Q 048697 29 ASELVTLTGS 38 (168)
Q Consensus 29 a~ELs~LC~v 38 (168)
-+|||.||.-
T Consensus 14 msDLs~lC~~ 23 (26)
T 2k1v_A 14 MTDLSALCXX 23 (26)
T ss_dssp HHHHTTTC--
T ss_pred HHHHHHHHhh
Confidence 3789999953
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.26 E-value=1e+02 Score=19.32 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFMLG 149 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~~ 149 (168)
+.+.|..++..++.+++.-+.+-..++..++.+. .+-|.-+.||.+|..-|-..
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~--------e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAA--------QLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHh
Confidence 4455666677777777666554444444433211 11233456666666665543
No 40
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=25.63 E-value=51 Score=18.91 Aligned_cols=22 Identities=5% Similarity=-0.210 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhhH
Q 048697 130 PVDEHNLQEQLQMDSAFMLGEL 151 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~ 151 (168)
.|..||.+||.+.-..|+..|-
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~Me 27 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMME 27 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHHHH
Confidence 4667899999987777666554
No 41
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=25.06 E-value=44 Score=21.18 Aligned_cols=41 Identities=10% Similarity=-0.085 Sum_probs=26.7
Q ss_pred HHhhhhcCc--EEEEEecCCCCCcccCC---chhHHHHHHhhcCCC
Q 048697 31 ELVTLTGSE--IAIVVFSQSGKPYTFGH---PSVEAVANRFLGMNQ 71 (168)
Q Consensus 31 ELs~LC~v~--vavIvfSp~gk~~~f~s---Psv~~Vl~Ry~~~~~ 71 (168)
=||+.++-. -..|...++|+.+..+. ||+.++|+.|...+.
T Consensus 41 ~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 86 (100)
T 1rja_A 41 VLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86 (100)
T ss_dssp EEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHHHHCCT
T ss_pred EEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 355655433 35555656776555443 689999999998653
No 42
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.95 E-value=1.3e+02 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=24.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
...++.|+.++..|+.++..++.+...+.+.+.
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877777665543
No 43
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.83 E-value=40 Score=22.43 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhh
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLW 155 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~ 155 (168)
++++||.++|+++-..|...+..++.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEe 63 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEA 63 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988888777665543
No 44
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=23.89 E-value=84 Score=23.99 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=10.3
Q ss_pred eeeehhchhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCc---hhHHHHHHhhcCC
Q 048697 15 IITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHP---SVEAVANRFLGMN 70 (168)
Q Consensus 15 ~vTf~KRr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sP---sv~~Vl~Ry~~~~ 70 (168)
++|+.||-.||..|..+|+.-=+=+=++ .+|.|+.- .+-++-++|.+..
T Consensus 126 ~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFewA~~L~q~i~~ln~k~~~~E 177 (246)
T 1z56_A 126 KVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEMADKLYKDICCVNDSYRNIK 177 (246)
T ss_dssp ----------------------------------------CTTSGGGTTHHHHHHHHTT
T ss_pred EEEEeehhhHHHhhheeEEeecCccchh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887773221111111 24455331 3667888888854
No 45
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=23.79 E-value=43 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHhhhhcCcE--EEEEecCCCCCcccCC--chhHHHHHHhhcCC
Q 048697 31 ELVTLTGSEI--AIVVFSQSGKPYTFGH--PSVEAVANRFLGMN 70 (168)
Q Consensus 31 ELs~LC~v~v--avIvfSp~gk~~~f~s--Psv~~Vl~Ry~~~~ 70 (168)
=||+.++-.| ..|...++|..+..+. |++.++|+.|...+
T Consensus 41 ~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~ 84 (96)
T 1jyr_A 41 SLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS 84 (96)
T ss_dssp EEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSC
T ss_pred EEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCC
Confidence 3566665444 3444555665443332 68999999999865
No 46
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.14 E-value=1.5e+02 Score=18.73 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMR 117 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~ 117 (168)
....|+.+++.+..++...++.++.|+...
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777666543
No 47
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=23.05 E-value=56 Score=22.22 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=12.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 131 VDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 131 l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
|-++|.+||.+-...|...|.++.+..
T Consensus 9 LR~~s~eEL~~~L~eLK~ELf~LRfq~ 35 (120)
T 3u5e_h 9 LRTKSKEQLASQLVDLKKELAELKVQK 35 (120)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555444444444444444444
No 48
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=22.99 E-value=46 Score=19.76 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
++-++|.+||.+....|...|..++++.
T Consensus 5 elr~~s~~EL~~~l~elk~Elf~LR~q~ 32 (63)
T 3r8s_Y 5 ELREKSVEELNTELLNLLREQFNLRMQA 32 (63)
T ss_dssp GTTSCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776666666666654
No 49
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=22.94 E-value=69 Score=19.21 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhhhhhc
Q 048697 130 PVDEHNLQEQLQMDSAFMLGELDLLWKP 157 (168)
Q Consensus 130 ~l~~Ls~eeL~~L~~~Le~~L~~v~~~~ 157 (168)
+|-++|.+||......|..-|..+++..
T Consensus 5 elr~~s~~EL~~~l~elk~ELf~LR~q~ 32 (67)
T 2zjr_V 5 EMRNLQATDFAKEIDARKKELMELRFQA 32 (67)
T ss_dssp TTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777666554
No 50
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=56 Score=21.68 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=26.2
Q ss_pred HHhhhh--------cCcEEEEEecCCCCCcccCC---chhHHHHHHhhcCC
Q 048697 31 ELVTLT--------GSEIAIVVFSQSGKPYTFGH---PSVEAVANRFLGMN 70 (168)
Q Consensus 31 ELs~LC--------~v~vavIvfSp~gk~~~f~s---Psv~~Vl~Ry~~~~ 70 (168)
=||+.+ .|.-..|...++|..+.... +++.++|+.|...+
T Consensus 53 ~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~ 103 (125)
T 2dm0_A 53 TISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103 (125)
T ss_dssp EEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCC
T ss_pred EEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCC
Confidence 466666 34445566666676554332 67999999998764
No 51
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.62 E-value=1.1e+02 Score=16.85 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
-+.+++...+.|.+++..+..+.+.|...+.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777888777777777776554
No 52
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.58 E-value=35 Score=22.63 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=30.8
Q ss_pred eeeehh-chhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCch-hHHHHHH
Q 048697 15 IITFSK-RRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPS-VEAVANR 65 (168)
Q Consensus 15 ~vTf~K-Rr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPs-v~~Vl~R 65 (168)
...|.+ ||+| |-+|.-|-+-|++.+.+|..|. ++.||.+
T Consensus 26 ~LYFEn~rrsG------------GG~V~~v~~~~~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 26 TLYFENRRRSG------------GGPVLSWQRLGCGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp HHHHHCTTTTC------------CCCEEEEEEETTEEEEEESSHHHHHHHHTC
T ss_pred eEEEeCCCcCC------------CceeeEEEEcCCcEEEEEcChHHHHHHhcC
Confidence 566766 5566 7889888888877889999987 7788877
No 53
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.53 E-value=69 Score=16.13 Aligned_cols=19 Identities=5% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 048697 131 VDEHNLQEQLQMDSAFMLG 149 (168)
Q Consensus 131 l~~Ls~eeL~~L~~~Le~~ 149 (168)
+.+|++-|+.+|..+||+.
T Consensus 10 i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 10 IEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHSBHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHH
Confidence 4578999999999999875
No 54
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.42 E-value=1.1e+02 Score=19.98 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
++..|..+...+++++...+++.+.|+
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777777766666555555
No 55
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.24 E-value=1.9e+02 Score=19.71 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHH
Q 048697 87 VRINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAF 146 (168)
Q Consensus 87 ~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~L 146 (168)
.....|..+...|.++++......+.++..+...... +.++.+.+..|...+
T Consensus 80 ~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~--------~~~~~~~~~~Li~~~ 131 (146)
T 3hh0_A 80 VFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE--------ERVNVALFSSFLQTF 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccchHHHHHHHHHH
Confidence 3455677788888888888877777777776654332 456666666664443
No 56
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.15 E-value=1.1e+02 Score=18.74 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSAFML 148 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~Le~ 148 (168)
..+.|..++..++.+++.-+.+-..++..++.+.. +-|.-+.||.+|...|-.
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e--------~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE--------ILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHH
Confidence 44566667777777777666554444443332111 113345566666665544
No 57
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.85 E-value=1.6e+02 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHH
Q 048697 132 DEHNLQEQLQMD 143 (168)
Q Consensus 132 ~~Ls~eeL~~L~ 143 (168)
+|+|.+||....
T Consensus 71 ~GI~~eeL~~~~ 82 (86)
T 3nr7_A 71 DGIDPNELLNSM 82 (86)
T ss_dssp TCCCHHHHHHHH
T ss_pred cCCCHHHHHhhh
Confidence 689999987543
No 58
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.51 E-value=1.6e+02 Score=18.56 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 89 INELNQQHNELRRQLDEEKEQEKILTQM 116 (168)
Q Consensus 89 ~~~l~~~~~~L~~~le~~k~~~~~l~~~ 116 (168)
...|+..++.+.+++...++.+..|+..
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776666644
No 59
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=21.31 E-value=41 Score=20.98 Aligned_cols=31 Identities=0% Similarity=-0.004 Sum_probs=22.8
Q ss_pred hhhhcCcEEEEEecCCCCCcccCCchhHHHHH
Q 048697 33 VTLTGSEIAIVVFSQSGKPYTFGHPSVEAVAN 64 (168)
Q Consensus 33 s~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~ 64 (168)
++|..+..+++++.++|+ +.|.+|....++.
T Consensus 16 ~il~~~~~~i~~~D~~g~-i~~~N~a~~~l~g 46 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLR-IIYVNSGCLRHVR 46 (118)
T ss_dssp CSSSCTTCEEEEECTTCB-EEEECHHHHHHHT
T ss_pred HHHhhCCceEEEECCCCe-EEEECHHHHHHhC
Confidence 467888999999998775 4566776555553
No 60
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=21.13 E-value=70 Score=24.50 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHhhhhcCcEEEEEecCCCCCcccCCchhHHHHHHhhc
Q 048697 21 RRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTFGHPSVEAVANRFLG 68 (168)
Q Consensus 21 Rr~gL~KKa~ELs~LC~v~vavIvfSp~gk~~~f~sPsv~~Vl~Ry~~ 68 (168)
|..+|+.-+.+ -.|.++.|||-+....+..|.+.+|.++|..
T Consensus 192 ~~~~l~~~~~~------~gi~v~a~spL~~G~l~~~~~l~~ia~~~g~ 233 (283)
T 3o0k_A 192 QQDELRLFHGK------HDIATEAWSPLGQGKLLEDPTLKSIAEKHAK 233 (283)
T ss_dssp CCHHHHHHHHH------TTCEEEEESTTCCC-CTTCHHHHHHHHHHTS
T ss_pred CcHHHHHHHHH------CCcEEEEecCCCCCccccchHHHHHHHHhCC
Confidence 33445444444 4678999999887766777888888888754
No 61
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=21.09 E-value=57 Score=20.83 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=18.5
Q ss_pred cCcEEEEEecCCCCCcccCCchhHHHHH
Q 048697 37 GSEIAIVVFSQSGKPYTFGHPSVEAVAN 64 (168)
Q Consensus 37 ~v~vavIvfSp~gk~~~f~sPsv~~Vl~ 64 (168)
.+.-++++.+++| -+.|.||++..++.
T Consensus 7 ~~~d~i~v~d~~G-~i~yvn~~~~~~lG 33 (111)
T 2vlg_A 7 TKTDIHAVLASNG-RIIYISANSKLHLG 33 (111)
T ss_dssp --CCEEEEECTTS-BEEEECTTHHHHHS
T ss_pred cCCCEEEEEcCCC-eEEEEChHHHHHhC
Confidence 4455677888877 46799998777654
No 62
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.99 E-value=1.2e+02 Score=21.80 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048697 86 QVRINELNQQHNELRRQLDEEKEQEKILTQMRR 118 (168)
Q Consensus 86 ~~~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~ 118 (168)
..++..+...-..|.+.+......+..++..+.
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemn 134 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMN 134 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655666666666665555555554443
No 63
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=20.79 E-value=79 Score=18.40 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEecCCCCCcccCCc-hhHHHHHHh
Q 048697 42 IVVFSQSGKPYTFGHP-SVEAVANRF 66 (168)
Q Consensus 42 vIvfSp~gk~~~f~sP-sv~~Vl~Ry 66 (168)
+.|+-|+|+.+.|+.+ ++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 5677899999888775 477787776
No 64
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=20.67 E-value=2e+02 Score=20.31 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHH
Q 048697 100 RRQLDEEKEQEKILTQMRRGKETQPRMWETPVDEHNLQEQLQMDSA 145 (168)
Q Consensus 100 ~~~le~~k~~~~~l~~~~~~~~~~~~~w~~~l~~Ls~eeL~~L~~~ 145 (168)
.+-++..+++...+++.+...... .+++.|+++|+.+-.-.
T Consensus 101 ~~~~~~s~~ri~~lekeL~~i~~~-----~P~~~mT~dd~~~a~Pe 141 (160)
T 2cly_B 101 AEFLTQSKTRIQEYEKELEKMRNI-----IPFDQMTIEDLNEVFPE 141 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CChHhCCHHHHHHhCch
Confidence 333444455666677666655444 28899999998766433
No 65
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.57 E-value=1.5e+02 Score=19.71 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048697 88 RINELNQQHNELRRQLDEEKEQEKILTQMRRG 119 (168)
Q Consensus 88 ~~~~l~~~~~~L~~~le~~k~~~~~l~~~~~~ 119 (168)
++..+...+..+.++++..+.+...+...++.
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666665555543
No 66
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.29 E-value=1.4e+02 Score=18.69 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 048697 90 NELNQQHNELRRQLDEEKEQEKILT 114 (168)
Q Consensus 90 ~~l~~~~~~L~~~le~~k~~~~~l~ 114 (168)
..|+.+++.++.++...++.+..|.
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556655666555555544443
Done!