BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048698
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 25/304 (8%)
Query: 2 EISIVSKEVVRPSSLDFHLLKPFKISLLDQLTPTTFSPLILFYPMR-NTHLKGAQISTQL 60
++ VS+E++ PSS LK +KIS LDQL T P ILFYP +++L AQ S L
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 61 KESLSKTLDHLYPFAGRVRDNLIINDYDEGVPYIETRVNTHLFEFLQN-PPMELLDQCLP 119
K+SLSK L H YP AGR+ N ++ D GVP++E RV L + +QN +E LDQ LP
Sbjct: 64 KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLP 123
Query: 120 ---YPPLSYQPNSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSRG 176
YP + N D VP AV+++ F+CGG A+G+ LSHKI D + + FL +W A RG
Sbjct: 124 SAAYPGGKIEVNED-VP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRG 181
Query: 177 ACHEAVTYKNIWFR---------------EANSKTRRFVFDAKAIASLRSEC-KGERVSN 220
+ ++ R + N +RFVFD + I +LR++ N
Sbjct: 182 ETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKN 241
Query: 221 PTRIEALSAFILKSAMLASRST--ANSRFVLHQAVNLRRLTEPRLSTYTVGNLFLFASAA 278
+R++ + A+I K + +R+ A ++FV+ QAVNLR P L Y +GN+ AA
Sbjct: 242 FSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAA 301
Query: 279 YNME 282
+ E
Sbjct: 302 VDAE 305
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 1 MEISIVSKEVVRPSSLDFHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGAQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ A++
Sbjct: 3 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 57
Query: 60 LKESLSKTLDHLYPFAGRVRDN----LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV ++E + + +F P L
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 117
Query: 116 QCLPYPPLSYQPNSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175
+ +P + Y +Q+ F CGG++LG+ + H DG + F+ SW+ +R
Sbjct: 118 RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 175
Query: 176 G 176
G
Sbjct: 176 G 176
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 1 MEISIVSKEVVRPSSLDFHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGAQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ A++
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 60
Query: 60 LKESLSKTLDHLYPFAGRVRDN----LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV ++E + + +F P L
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 116 QCLPYPPLSYQPNSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175
+ +P + Y +Q+ F CGG++LG+ + H DG + F+ SW+ +R
Sbjct: 121 RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 176 G 176
G
Sbjct: 179 G 179
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 12/181 (6%)
Query: 1 MEISIVSKEVVRPSSLDFHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGAQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ A++
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 60
Query: 60 LKESLSKTLDHLYPFAGRVRDN----LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV ++E + + +F P L
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 116 QCLPYPPLSYQPNSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175
+ +P + Y +Q+ F GG++LG+ + H DG + F+ SW+ +R
Sbjct: 121 RLIP--AVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 176 G 176
G
Sbjct: 179 G 179
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 59 QLKESLSKTLDHLYPFAGRV-------RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPM 111
+K SLS TL H YPF G++ + I + V N L E N P
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPR 123
Query: 112 ELLDQCLPYPPLSYQPN--SD--QVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFL 167
D+ P+ + SD ++P +VQ+ +F GIA+G+ H + D +T FL
Sbjct: 124 NC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 168 RSWAANSRGA 177
++W + +R
Sbjct: 183 KAWTSIARSG 192
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 59 QLKESLSKTLDHLYPFAGRV-------RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPM 111
+K SLS TL H YPF G++ + I + V N L E N P
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPR 123
Query: 112 ELLDQCLPYPPLSYQPN--SD--QVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFL 167
D+ P+ + SD ++P +VQ+ +F GIA+G+ H + D +T FL
Sbjct: 124 NC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 168 RSWAANSRGA 177
++W + +R
Sbjct: 183 KAWTSIARSG 192
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 41 ILFYPMRNTHLKGAQ-ISTQLKESLSKTLDHLYPFAGRVRDNLIINDYDE-------GVP 92
ILFY + + Q I LK+SLS TL + P AG V + Y E V
Sbjct: 40 ILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVS 99
Query: 93 YIETRVNTHLFEFLQNPPMELLDQCLPYPPLSY---QPNSDQVPQAAVQLNIFDCGGIAL 149
I + + + P D P L+ P P A+Q+ +F GI++
Sbjct: 100 VIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISI 159
Query: 150 GLCLSHKIIDGATASGFLRSWA 171
G H DGAT F+R+WA
Sbjct: 160 GFTNHHVAGDGATIVKFVRAWA 181
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRAYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYAGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 79 RDNLIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQ 138
+ +++ N Y EG P + ++ E Q + QP+S AV
Sbjct: 43 QGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102
Query: 139 LNIFDCGGIALGLCLSH 155
+ + G LG+ LSH
Sbjct: 103 FTVLEHGDTVLGMNLSH 119
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 50 HLKGAQISTQLKESLSKTLDHLYPFAGRVRDNLIINDYDEGVPYIETRVNTHLFEFLQNP 109
H+ Q L++ + T + + AG V ++ + Y + + I + L + +
Sbjct: 107 HITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQ-IAQITAQTGAKL---VVDA 162
Query: 110 PMELLDQCLPYPPLSYQPNSDQV 132
EL + LPY PL +PN D++
Sbjct: 163 EKELAESVLPYHPLFIKPNKDEL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,727,756
Number of Sequences: 62578
Number of extensions: 288412
Number of successful extensions: 710
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 22
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)