Query 048698
Match_columns 285
No_of_seqs 170 out of 1144
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 21:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048698.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048698hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.6 2.3E-05 1.7E-09 60.9 4.7 107 55-175 33-146 (174)
2 d1q9ja1 c.43.1.2 (A:1-175) Pol 97.6 0.00038 2.7E-08 53.6 11.6 131 24-175 8-144 (175)
3 d1q9ja2 c.43.1.2 (A:181-418) P 95.9 0.027 1.9E-06 44.8 10.1 84 194-281 31-114 (238)
4 d3claa_ c.43.1.1 (A:) Chloramp 87.3 0.56 4.1E-05 36.4 6.3 46 130-176 162-210 (213)
5 d1q23a_ c.43.1.1 (A:) Chloramp 84.1 0.44 3.2E-05 37.2 4.0 45 130-175 162-209 (214)
6 d1dpba_ c.43.1.1 (A:) Dihydrol 73.2 1.5 0.00011 34.7 4.0 28 149-176 210-237 (243)
7 d1scza_ c.43.1.1 (A:) Dihydrol 73.0 1.5 0.00011 34.4 4.0 30 147-176 196-225 (233)
8 d1b5sa_ c.43.1.1 (A:) Dihydrol 72.9 1.3 9.3E-05 35.1 3.6 30 147-176 207-236 (242)
9 d1l5aa2 c.43.1.2 (A:175-424) V 67.5 20 0.0015 26.9 10.0 98 167-274 7-104 (250)
10 d1nm8a1 c.43.1.3 (A:9-385) Car 31.7 25 0.0018 29.0 4.9 37 137-175 298-334 (377)
11 d1xl7a1 c.43.1.3 (A:11-392) Pe 26.6 23 0.0017 29.4 3.6 36 137-174 301-336 (382)
12 d1t1ua1 c.43.1.3 (A:20-401) Ch 26.0 33 0.0024 28.3 4.5 37 137-175 299-335 (382)
13 d1clvi_ g.3.2.1 (I:) alpha-amy 22.1 11 0.00083 18.5 0.4 8 264-271 24-31 (32)
No 1
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.62 E-value=2.3e-05 Score=60.94 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHhhccccCCCceecCceEEEeCCCCeeEEEEEEeeccccccCCCCcc--c---ccc-c-CCCCCCCCCC
Q 048698 55 QISTQLKESLSKTLDHLYPFAGRVRDNLIINDYDEGVPYIETRVNTHLFEFLQNPPME--L---LDQ-C-LPYPPLSYQP 127 (285)
Q Consensus 55 ~~~~~Lk~sL~~~L~~~p~laGrl~~~~~i~~~~~gv~f~~a~~~~~~~~l~~~p~~~--~---~~~-l-~p~~~~~~~~ 127 (285)
.+.+.|++|+.+++..+|-|--++... ++++ .........+.++....+.. . ... + .|..
T Consensus 33 ld~~~l~~A~~~l~~rh~~LRt~f~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 99 (174)
T d1l5aa1 33 LDTTLLLRALHLTVSEIDLFRARFSAQ------GELY-WHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSST------ 99 (174)
T ss_dssp CCHHHHHHHHHHHHHTCGGGGEEECTT------CCEE-ECSSCCCCEEEECTTCTTHHHHHHHHHHHHHTSCCC------
T ss_pred CCHHHHHHHHHHHHHhCchheEEEecc------CcEE-EEEEeeceeeEecccccchHHHHHHHHHHHHhCCcc------
Confidence 469999999999999999996666421 1111 00000011112222211110 0 011 1 1211
Q ss_pred CCCCCCeEEEEEeEEecCcEEEEeeeccccccHHHHHHHHHHHHHHhc
Q 048698 128 NSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175 (285)
Q Consensus 128 ~~~~~Pll~vQvt~f~cGG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 175 (285)
....|++.+.+-....|...+.+.+||.++||.|+..|++.++..++
T Consensus 100 -l~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~ 146 (174)
T d1l5aa1 100 -LIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (174)
T ss_dssp -CBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred -ccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence 23558888887777778889999999999999999999999988765
No 2
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.59 E-value=0.00038 Score=53.64 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred ccCCcCcCCCC--CCCccEEEEecCCCCCCCccchHHHHHHHHHHhhccccCCCceecCceEEEeCCCCeeEEEEEEee-
Q 048698 24 FKISLLDQLTP--TTFSPLILFYPMRNTHLKGAQISTQLKESLSKTLDHLYPFAGRVRDNLIINDYDEGVPYIETRVNT- 100 (285)
Q Consensus 24 ~~LS~lD~~~~--~~y~~~~~~f~~~~~~~~~~~~~~~Lk~sL~~~L~~~p~laGrl~~~~~i~~~~~gv~f~~a~~~~- 100 (285)
-.|+..++... ..++...+-.+.+ .+.+.|++++..++..+|.|-.++.. .+.|..........
T Consensus 8 r~l~~~e~~~~~~~~~~~~~~~l~g~-------ld~~~l~~A~~~lv~rh~~LRt~f~~------~~~~~~~~~~~~~~~ 74 (175)
T d1q9ja1 8 RKLSHSEEVFAQYEVFTSMTIQLRGV-------IDVDALSDAFDALLETHPVLASHLEQ------SSDGGWNLVADDLLH 74 (175)
T ss_dssp EECCHHHHHHHHTTCEEEEEEEEESC-------CCHHHHHHHHHHHHHHCGGGSEEEEE------CTTSSEEEEECCSSS
T ss_pred HHhCHHhhhcccCceEEEEEEEEcCC-------CCHHHHHHHHHHHHHhchhheEEEEE------eCCeeEEEEECCCCC
Confidence 34677776553 2344444444432 46999999999999999999887742 12221111111000
Q ss_pred ---ccccccCCCCcccccccCCCCCCCCCCCCCCCCeEEEEEeEEecCcEEEEeeeccccccHHHHHHHHHHHHHHhc
Q 048698 101 ---HLFEFLQNPPMELLDQCLPYPPLSYQPNSDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175 (285)
Q Consensus 101 ---~~~~l~~~p~~~~~~~l~p~~~~~~~~~~~~~Pll~vQvt~f~cGG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 175 (285)
...+..... ......-.+.. ...+.|+..+.+..- +++..|.+.+||.++||.|+..+++.+.+.+.
T Consensus 75 ~~~~~~d~~~~~-~~~~~~~~~~~------l~~~~~l~~~~i~~~-~~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 75 SGICVIDGTAAT-NGSPSGNAELR------LDQSVSLLHLQLILR-EGGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp CCCEEEC-------------CCCC------CCTTTCSEEEEEECC-SSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcccch-hHHHHhhcccC------ccCCCCeEEEEEEec-CCeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 000111100 00000001111 023456665555433 47888999999999999999999999876654
No 3
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.87 E-value=0.027 Score=44.77 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=65.2
Q ss_pred ccEEEEEeChHHHHHHHHhcccCCCCCCChhhhhHHHHHHHHHHhhcCCCCCcEEEEEEecCcCcCCCCCCcCcccccee
Q 048698 194 SKTRRFVFDAKAIASLRSECKGERVSNPTRIEALSAFILKSAMLASRSTANSRFVLHQAVNLRRLTEPRLSTYTVGNLFL 273 (285)
Q Consensus 194 ~~~~~f~~~~~~l~~Lk~~~~~~~~~~~St~dal~A~iW~~~~~ar~~~~~~~~~l~~~vd~R~r~~p~lp~~Y~GN~~~ 273 (285)
.....+.++++.-++|++.|.+ ..+|.+.++.|-+-..+.+-.+. ++....+..+++.|+++.|+...+.+||.+.
T Consensus 31 ~~~~~~~ls~~~t~~l~~~~~~---~~~T~~~~l~aa~~~~l~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~G~~~~ 106 (238)
T d1q9ja2 31 VPVTRLWLSKQQTSDLMAFGRE---HRLSLNAVVAAAILLTEWQLRNT-PHVPIPYVYPVDLRFVLAPPVAPTEATNLLG 106 (238)
T ss_dssp CCEEEECCCHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHHHHHHTC-SSCCEEEEEEEETTTTSSSCCCTTTBSCCEE
T ss_pred CceEEEEeCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHhCC-CCccccccccccccccccCccccceeEeeee
Confidence 3455678999999999999985 46899999998666666554332 3456788999999999998888888999887
Q ss_pred eccccccc
Q 048698 274 FASAAYNM 281 (285)
Q Consensus 274 ~~~~~~~~ 281 (285)
......++
T Consensus 107 ~~~~r~~~ 114 (238)
T d1q9ja2 107 AASYLAEI 114 (238)
T ss_dssp EEEEEECC
T ss_pred eEEEEEec
Confidence 77665554
No 4
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=87.26 E-value=0.56 Score=36.44 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred CCCCeEEEEEeEEecCc---EEEEeeeccccccHHHHHHHHHHHHHHhcC
Q 048698 130 DQVPQAAVQLNIFDCGG---IALGLCLSHKIIDGATASGFLRSWAANSRG 176 (285)
Q Consensus 130 ~~~Pll~vQvt~f~cGG---~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (285)
...|++..=--.-+ || +-|++++||.+.||.-...|++.+.+.+..
T Consensus 162 ~~~Pii~~Gk~~~~-~~r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~ 210 (213)
T d3claa_ 162 YFAPIITMAKYQQE-GDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp CCSCEEEEECCEEE-TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred ccccEEecCccEEE-CCEEEEEEEEEecccccccHHHHHHHHHHHHHHhC
Confidence 35576654222223 44 558999999999999999999999988754
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=84.05 E-value=0.44 Score=37.19 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCCCeEEE-EEeEEecCc--EEEEeeeccccccHHHHHHHHHHHHHHhc
Q 048698 130 DQVPQAAV-QLNIFDCGG--IALGLCLSHKIIDGATASGFLRSWAANSR 175 (285)
Q Consensus 130 ~~~Pll~v-Qvt~f~cGG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 175 (285)
...|.+.+ |+.. ++|. +-|++++||.+.||.-...|++.+.+...
T Consensus 162 ~~vpii~~Gk~~~-~~~r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 162 FFAPVFTMGKYYT-QGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp CCSCEEEECCCEE-ETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEecceEE-ECCEEEEEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 35677765 4332 3243 35899999999999999999999988753
No 6
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=73.15 E-value=1.5 Score=34.73 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.7
Q ss_pred EEeeeccccccHHHHHHHHHHHHHHhcC
Q 048698 149 LGLCLSHKIIDGATASGFLRSWAANSRG 176 (285)
Q Consensus 149 l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (285)
|++++.|.+.||.-...||+.|.+....
T Consensus 210 ltls~DHRvidGa~aa~FL~~l~~~lE~ 237 (243)
T d1dpba_ 210 LSLSYDCRVINGAAAARFTKRLGDLLAD 237 (243)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEeecccccHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999987653
No 7
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=72.96 E-value=1.5 Score=34.44 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=27.0
Q ss_pred EEEEeeeccccccHHHHHHHHHHHHHHhcC
Q 048698 147 IALGLCLSHKIIDGATASGFLRSWAANSRG 176 (285)
Q Consensus 147 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (285)
+.|++++.|.+.||.-...|++.|.+..-.
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE~ 225 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLED 225 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHhC
Confidence 569999999999999999999999987653
No 8
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=72.90 E-value=1.3 Score=35.07 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=26.7
Q ss_pred EEEEeeeccccccHHHHHHHHHHHHHHhcC
Q 048698 147 IALGLCLSHKIIDGATASGFLRSWAANSRG 176 (285)
Q Consensus 147 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (285)
+-|++++.|.+.||.-...|++.|.+....
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE~ 236 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLSD 236 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999987643
No 9
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=67.49 E-value=20 Score=26.88 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCCccccCCccccCCCccEEEEEeChHHHHHHHHhcccCCCCCCChhhhhHHHHHHHHHHhhcCCCCCc
Q 048698 167 LRSWAANSRGACHEAVTYKNIWFREANSKTRRFVFDAKAIASLRSECKGERVSNPTRIEALSAFILKSAMLASRSTANSR 246 (285)
Q Consensus 167 l~~wa~~~rg~~~~~~P~p~~~~~~~~~~~~~f~~~~~~l~~Lk~~~~~~~~~~~St~dal~A~iW~~~~~ar~~~~~~~ 246 (285)
.+.|.+..+|......+...+...........+.++++..++|++.|.. ..+|.+.++.|. |..+. ++. .. +.
T Consensus 7 ~~yW~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---~~~s~~~~l~aa-~~~~l-~~~-~~-~~ 79 (250)
T d1l5aa2 7 KQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANA---NQIGWPDALVAL-CALYL-ESA-EP-DA 79 (250)
T ss_dssp HHHHHHHHHTSCCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHH---TTCCHHHHHHHH-HHHHH-HHH-ST-TC
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCCceEEEEEECHHHHHHHHHHHHh---cCCCHHHHHHHH-HHHHh-hhh-cc-ce
Confidence 3568888777542111111111122345566788999999999998875 468888888886 55544 332 22 34
Q ss_pred EEEEEEecCcCcCCCCCCcCccccceee
Q 048698 247 FVLHQAVNLRRLTEPRLSTYTVGNLFLF 274 (285)
Q Consensus 247 ~~l~~~vd~R~r~~p~lp~~Y~GN~~~~ 274 (285)
..+..+++.|..- --.+.+|.++..
T Consensus 80 ~vig~~~~~R~~~---~~~~~~G~~~n~ 104 (250)
T d1l5aa2 80 PWLWLPFMNRWGS---VAANVPGLMVNS 104 (250)
T ss_dssp CEEEEEECCCTTS---GGGGSCSCCCEE
T ss_pred eeccceecCCCCh---hhhhCeEeEEee
Confidence 5689999999642 234556665533
No 10
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.70 E-value=25 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=29.2
Q ss_pred EEEeEEecCcEEEEeeeccccccHHHHHHHHHHHHHHhc
Q 048698 137 VQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175 (285)
Q Consensus 137 vQvt~f~cGG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 175 (285)
+|+..++ .|.+ |+.+-|+.+||..+..++...-....
T Consensus 298 ~q~IV~~-nG~~-g~~~EHS~~DG~~v~~~~~~v~~~~~ 334 (377)
T d1nm8a1 298 LQFIVAE-DGSC-GLVYEHAAAEGPPIVTLLDYVIEYTK 334 (377)
T ss_dssp EEEEEET-TSCE-EEEECTTSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCE-EeeccCCcccHHHHHHHHHHHHHHhh
Confidence 6777778 5544 89999999999999988887665554
No 11
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.55 E-value=23 Score=29.35 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.2
Q ss_pred EEEeEEecCcEEEEeeeccccccHHHHHHHHHHHHHHh
Q 048698 137 VQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANS 174 (285)
Q Consensus 137 vQvt~f~cGG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~ 174 (285)
+|+..++ .|.+ |+.+-|+.+||+.+..++....+..
T Consensus 301 ~q~IV~~-nG~~-G~~~EHS~~DG~~~~~l~~~i~~~~ 336 (382)
T d1xl7a1 301 YNLISFA-NGIF-GCCCDHAPYDAMVMVNIAHYVDERV 336 (382)
T ss_dssp CEEEECT-TSCE-EEEECSSSCCTHHHHHHHHHHHHHH
T ss_pred eeEEEeC-CCCE-EEEeeCCchhHHHHHHHHHHHHHHH
Confidence 5777777 5544 8999999999999988888765543
No 12
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.02 E-value=33 Score=28.32 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.3
Q ss_pred EEEeEEecCcEEEEeeeccccccHHHHHHHHHHHHHHhc
Q 048698 137 VQLNIFDCGGIALGLCLSHKIIDGATASGFLRSWAANSR 175 (285)
Q Consensus 137 vQvt~f~cGG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 175 (285)
+|+..++ .|.+ |+.+-|+.+||+....+....-..+.
T Consensus 299 lq~IV~~-nG~~-g~~~EHS~~DG~~~~~~~~~i~~~~~ 335 (382)
T d1t1ua1 299 LQFVVGR-DGTC-GVVCEHSPFDGIVLVQCTEHLLKHMM 335 (382)
T ss_dssp EEEEECT-TSCE-EEEECSTTCCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEC-CCcE-EEecccCcccHHHHHHHHHHHHHHHh
Confidence 6777777 5544 89999999999999999887765543
No 13
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=22.09 E-value=11 Score=18.53 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=6.2
Q ss_pred CcCccccc
Q 048698 264 STYTVGNL 271 (285)
Q Consensus 264 p~~Y~GN~ 271 (285)
.++|+||+
T Consensus 24 tsdyygnc 31 (32)
T d1clvi_ 24 TSDYYGNC 31 (32)
T ss_dssp SCSSSEEB
T ss_pred cccccccC
Confidence 46788986
Done!