Query 048699
Match_columns 312
No_of_seqs 277 out of 2768
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 3.1E-25 1.1E-29 204.5 17.9 245 43-309 7-310 (491)
2 3o7q_A L-fucose-proton symport 99.8 1.6E-19 5.5E-24 163.7 14.3 210 49-310 27-294 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 6.3E-20 2.1E-24 166.9 11.1 160 44-217 24-214 (451)
4 2gfp_A EMRD, multidrug resista 99.7 1.9E-17 6.4E-22 147.2 7.5 140 73-215 15-180 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.6 2.9E-14 9.9E-19 131.1 15.5 126 80-208 36-194 (491)
6 2xut_A Proton/peptide symporte 99.4 1.8E-12 6.2E-17 120.1 10.6 127 80-209 35-197 (524)
7 4gc0_A D-xylose-proton symport 99.2 6.3E-11 2.2E-15 108.7 9.8 133 79-214 298-467 (491)
8 2cfq_A Lactose permease; trans 99.1 8.2E-12 2.8E-16 112.6 0.8 131 79-212 28-189 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.1 1.6E-10 5.5E-15 104.6 8.7 125 82-209 277-432 (451)
10 3o7q_A L-fucose-proton symport 98.9 1.8E-09 6.1E-14 97.4 7.6 123 81-208 282-430 (438)
11 2cfq_A Lactose permease; trans 98.9 1.2E-09 4.1E-14 98.3 5.0 119 93-214 259-404 (417)
12 4aps_A DI-OR tripeptide H+ sym 98.6 1.9E-08 6.6E-13 92.1 4.7 122 83-207 309-468 (491)
13 2gfp_A EMRD, multidrug resista 98.0 1.5E-06 5.3E-11 76.4 2.8 109 83-195 225-361 (375)
14 2xut_A Proton/peptide symporte 97.7 3E-05 1E-09 71.3 5.1 87 95-184 337-461 (524)
15 2g9p_A Antimicrobial peptide l 59.7 4.3 0.00015 19.2 1.2 14 115-128 2-15 (26)
16 4dve_A Biotin transporter BIOY 23.0 1.9E+02 0.0066 22.4 5.9 24 103-126 100-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=3.1e-25 Score=204.53 Aligned_cols=245 Identities=22% Similarity=0.349 Sum_probs=188.4
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCc--------ccchhHHHHHHHHHHHHHHHHHH
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLS--------VREDLLIEASLLLMTIGAISGSL 114 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ig~~ 114 (312)
+++.+.++++++++.+.+|| +.++++..++.+.++++.+ ....+++. +.+.+|.++|++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gy----------d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---s~~~~G~~iG~~ 73 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGY----------DTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV---ASALIGCIIGGA 73 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHH---HTHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHHHHHHHH
Confidence 35567777778889999999 8888888888887776432 23456777 999999999999
Q ss_pred hHHhhhhhcChhHHHHHHHHHHHHHHHHHHH------------------hcc---------------------cceeeee
Q 048699 115 INGKIADLTGQRCAMRLSDLFCILGWLAIAF------------------SKQ---------------------IPIYITE 155 (312)
Q Consensus 115 ~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~------------------~~~---------------------~~~~i~e 155 (312)
++|+++||+|||++++++.+++.++.+++++ +++ .+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998874 333 6689999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhc
Q 048699 156 IAPKNVRGAYTATNQLLVASGLSVTYLVGT------------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223 (312)
Q Consensus 156 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~ 223 (312)
+.|+++|++..++.+.+..+|.++++.++. ...||+.+.+..+..++.++..+++||||+|+ ..+
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L---~~~ 230 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL---MSR 230 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHH---HHT
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHH---HHc
Confidence 999999999999999999999888877652 23688888888888888888888999999999 999
Q ss_pred CCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHH
Q 048699 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIF 303 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (312)
++.+++++.+++.++.+... ++..+.++..+.+++ .......+ ..++..+......++++.+.+.+.+|.+.++
T Consensus 231 ~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (491)
T 4gc0_A 231 GKQEQAEGILRKIMGNTLAT-QAVQEIKHSLDHGRK--TGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchhHHHHhHHHhcCCchhH-HHHHHHHHHHHhhhh--hhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence 99999999998876543211 111111111111111 11111222 2355667777788888999999999999999
Q ss_pred HHcCCC
Q 048699 304 AAAGKF 309 (312)
Q Consensus 304 ~~~G~~ 309 (312)
+..|.+
T Consensus 305 ~~~~~~ 310 (491)
T 4gc0_A 305 KTLGAS 310 (491)
T ss_dssp HHSSCC
T ss_pred HhcCCC
Confidence 988765
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.81 E-value=1.6e-19 Score=163.66 Aligned_cols=210 Identities=13% Similarity=0.045 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA 128 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~ 128 (312)
..+.+.+..+..++ ......+..|.+.+++|++..+.+++. +.+.++.++++++.|+++||+|||++
T Consensus 27 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 27 PFALLCSLFFLWAV----------ANNLNDILLPQFQQAFTLTNFQAGLIQ---SAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHSCCCSHHHHHHH---HHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 33344455566666 666677788899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 129 MRLSDLFCILGWLAI---AFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
++++.++.+++.+++ +++++ ...++.|++|+++|+++.++.+.+..+|.++++.++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 66666 557889999999999999999999999999998887
Q ss_pred hhHH------------------------------HHHHHHHHHHHHHHHHHHhhc--ccCChHhHHHHHhcCCHHHHHHH
Q 048699 185 TVVS------------------------------CLVLALIAAVPCLLQVVGLFF--IPEIAQSIIRRATIGKEKELDTT 232 (312)
Q Consensus 185 ~~~~------------------------------w~~~~~~~~~~~~~~~~~~~~--~pes~~~~~~~~~~~~~~~~~~~ 232 (312)
.... ||+.|++.+++.++..+..++ .||+++.. +
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~-------- 239 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------H-------- 239 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------C--------
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------c--------
Confidence 4432 999998777665555443332 34443110 0
Q ss_pred HHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHH-HHHc-CCCC
Q 048699 233 LQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYI-FAAA-GKFT 310 (312)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-G~~~ 310 (312)
+ + +++++.+.+++++++++..+...+...+.. .....+..|.|.+ +++. |+++
T Consensus 240 -------~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 240 -------S-D-------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp -------C-C-------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSTTCCH
T ss_pred -------c-c-------------ccccchhhhHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCcch
Confidence 0 0 001112235667777765555444433333 2355677888888 8776 7764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=6.3e-20 Score=166.91 Aligned_cols=160 Identities=12% Similarity=-0.001 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 048699 44 PAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT 123 (312)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 123 (312)
+.++.......++.+..++ ......+..|.+.+++ .+..+.+++. +++.++..++++++|+++||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYL----------VRKNFALAMPYLVEQG-FSRGDLGFAL---SGISIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHTSHHHHHHHTTSST-TCSSCHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-ccHhHHHHHH---HHHHHHHHHHHHhHHHHHHhc
Confidence 3445555566666677777 6666777888999999 9999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH----hcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHH
Q 048699 124 GQRCAMRLSDLFCILGWLAIAF----SKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLS 178 (312)
Q Consensus 124 Grk~~~~~~~~~~~~~~~~~~~----~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~ 178 (312)
|||++++++.++.+++.+++++ +++ ...++.|++|+++|++++++.+.+..+|.+
T Consensus 90 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 776 456889999999999999999999999988
Q ss_pred HHHHhh----hhHH-HHHHHHHHHHHHHHHHH-HhhcccCChHhH
Q 048699 179 VTYLVG----TVVS-CLVLALIAAVPCLLQVV-GLFFIPEIAQSI 217 (312)
Q Consensus 179 ~~~~~~----~~~~-w~~~~~~~~~~~~~~~~-~~~~~pes~~~~ 217 (312)
+++.++ ...+ ||+.|++.++++++..+ ..+++||+|+..
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 888776 3457 99999998887766544 456778887543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=1.9e-17 Score=147.21 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=119.5
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
......+..|.+.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVM---GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHH---HHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445556778888999999999999999 9999999999999999999999999999999999999888877766
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH-H
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV-G 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~-~ 206 (312)
...++.|++|+++|+++.+..+.+..+|..+++.++ ...+||+.+++.+++.++..+ .
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998888876 445899999988887776655 4
Q ss_pred hhcccCChH
Q 048699 207 LFFIPEIAQ 215 (312)
Q Consensus 207 ~~~~pes~~ 215 (312)
.+++||+++
T Consensus 172 ~~~~~~~~~ 180 (375)
T 2gfp_A 172 ARWMPETRP 180 (375)
T ss_dssp CCSSCCCST
T ss_pred HHHCcccCC
Confidence 456677653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.58 E-value=2.9e-14 Score=131.13 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=105.5
Q ss_pred Cccccccc-----cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc-----
Q 048699 80 AESGITAD-----LGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 80 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
..+++.++ +|.+..+.+++. +.+.++..++++++|+++|| +|||+++.++.++.+++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIM---AIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALF 112 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHH
T ss_pred HHHHHHhccchhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555 999999999999 99999999999999999999 89999999999999999998888776
Q ss_pred ----------------cceeeeecCCCCc--hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNV--RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
...++.|++|+++ |+.+.+.++.+..+|..+++.++ ...+||+.|++.++..++..+.
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5578899999988 77778888888888888887776 4468999999987776665554
Q ss_pred hh
Q 048699 207 LF 208 (312)
Q Consensus 207 ~~ 208 (312)
.+
T Consensus 193 ~~ 194 (491)
T 4aps_A 193 YY 194 (491)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.37 E-value=1.8e-12 Score=120.12 Aligned_cols=127 Identities=15% Similarity=0.078 Sum_probs=106.9
Q ss_pred CccccccccC------CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhc-c---
Q 048699 80 AESGITADLG------LSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSK-Q--- 148 (312)
Q Consensus 80 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~-~--- 148 (312)
..+++.+++| .+..+.+++. +.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVF---HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHH---HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3446677888 9999999999 999999999999999999999 999999999999999999988887 6
Q ss_pred ------------------cceeeeecCCCCchhHHHHH---HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH
Q 048699 149 ------------------IPIYITEIAPKNVRGAYTAT---NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 ------------------~~~~i~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 203 (312)
...++.|++|+++|+++.+. .+.+..+|..+++.++ ...+|++.|++.+++.++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 45688999999999877666 7888888888888776 3458999999888776666
Q ss_pred HHHhhc
Q 048699 204 VVGLFF 209 (312)
Q Consensus 204 ~~~~~~ 209 (312)
.+..++
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 554443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=6.3e-11 Score=108.69 Aligned_cols=133 Identities=15% Similarity=0.084 Sum_probs=97.1
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
...+.+.+..+.+........ ....+...++.++++++.||+|||+.++.+.....++.+..+....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQT---IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHH---HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 344566666777666666667 7788889999999999999999999998888777766655443211
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----------VVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----------~~~w~~~~~~~~~~~~~ 202 (312)
...+.+|.+|++.|+++.++......+|.++++.+.. ..++.+.|++.++++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2357899999999999999998888777777654431 12344567776666666
Q ss_pred HHH-HhhcccCCh
Q 048699 203 QVV-GLFFIPEIA 214 (312)
Q Consensus 203 ~~~-~~~~~pes~ 214 (312)
..+ .++++||++
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 554 457889985
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.12 E-value=8.2e-12 Score=112.61 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=82.8
Q ss_pred CCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHH---HHHHHh----cc--
Q 048699 79 PAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGW---LAIAFS----KQ-- 148 (312)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~---~~~~~~----~~-- 148 (312)
+..| ++++++|++..+.+++. +.+.++..++++++|+++||+|||++++++.++..++. ....+. ..
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIF---AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHH---HHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677999999999999 99999999999999999999999999998877654321 111111 11
Q ss_pred ----------------cceeeeecCCC--CchhHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHh
Q 048699 149 ----------------IPIYITEIAPK--NVRGAYTATNQLLVASGLSVTYLVGTV---VSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 ----------------~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~ 207 (312)
....+.++.++ +.|+...+....+..+|..+++.++.. .+|++.|++.+++.++..+..
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 01112223222 344555555544555565566555422 478999887766655544444
Q ss_pred hcccC
Q 048699 208 FFIPE 212 (312)
Q Consensus 208 ~~~pe 212 (312)
++.++
T Consensus 185 ~~~~~ 189 (417)
T 2cfq_A 185 FFAKT 189 (417)
T ss_dssp CSSCC
T ss_pred HHcCc
Confidence 44443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.10 E-value=1.6e-10 Score=104.61 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=98.3
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--ChhHHHHHHHHHHH-HHHHHHHHhc--c--------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT--GQRCAMRLSDLFCI-LGWLAIAFSK--Q-------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--Grk~~~~~~~~~~~-~~~~~~~~~~--~-------- 148 (312)
.++++.+|.+..+.+++. +...++.+++.++.|++.||+ |||+.+.++.++.. ++.++..+.+ +
T Consensus 277 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (451)
T 1pw4_A 277 TYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 353 (451)
T ss_dssp HHBTTBSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 345555899999999999 999999999999999999999 99998887776655 5554444432 2
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.|..|++.|+++.++.+....+ |..+++.+. +..+|+..|++.+++.++..+..++
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 336779999999999999999988888 888887775 3347889988888777776655543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.91 E-value=1.8e-09 Score=97.37 Aligned_cols=123 Identities=10% Similarity=-0.082 Sum_probs=91.3
Q ss_pred ccc-cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 81 ESG-ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
..+ +++.+|.+..+.++.. +...++.+++.++.|+++||+|||+.+.++.++..++.++..+.++
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 358 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYL---TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS 358 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 345 5566799999999999 9999999999999999999999999999998888888777766554
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHH-HHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVS-CLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~-w~~~~~~~~~~~~~~~~~~~ 208 (312)
...+..|.+|++ |+.+.++.. ...+|..+++.+. +..+ ++..|++.+++.++..+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 334557778766 788877666 3446666666654 4556 77777776555444444333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.87 E-value=1.2e-09 Score=98.34 Aligned_cols=119 Identities=11% Similarity=0.018 Sum_probs=87.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cce
Q 048699 93 REDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPI 151 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 151 (312)
...++.. ++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++ ...
T Consensus 259 ~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 259 RVFGYVT---TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666 7778888899999999999999999988887777666555443333 345
Q ss_pred eeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hcccCCh
Q 048699 152 YITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIPEIA 214 (312)
Q Consensus 152 ~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~pes~ 214 (312)
++.|.+|++.|+++.+. ++....+|..++|.+. +..++...|.+.+++++++.+.. ++.||.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 78999999999999888 4766777777776665 34578888888777777665543 4455543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.62 E-value=1.9e-08 Score=92.10 Aligned_cols=122 Identities=12% Similarity=-0.017 Sum_probs=87.7
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH-----HHHHHHHHHHHHHHHhc---------c
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR-----LSDLFCILGWLAIAFSK---------Q 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~-----~~~~~~~~~~~~~~~~~---------~ 148 (312)
+..+.++.+..+.++.. +...++..++.++.|++.||+|||+... ++.++.+++.++..... +
T Consensus 309 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQ---SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVS 385 (491)
T ss_dssp HHHHSCCCSSSCSGGGT---THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCC
T ss_pred HHHHHhccCccCHHHHh---ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555666667778888 8889999999999999999999986544 55655555554444321 1
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV---SCLVLALIAAVPCLLQV 204 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 204 (312)
...++.|.+|++.|+++.++.+....+|..+++.+.... ++.+.+.+.++++++..
T Consensus 386 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 345779999999999999999999999999998887433 45566666666655554
Q ss_pred HHh
Q 048699 205 VGL 207 (312)
Q Consensus 205 ~~~ 207 (312)
+..
T Consensus 466 ~~~ 468 (491)
T 4aps_A 466 IVL 468 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.05 E-value=1.5e-06 Score=76.44 Aligned_cols=109 Identities=18% Similarity=0.021 Sum_probs=73.6
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHH-HHHHHH------------------HHHH
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSD-LFCILG------------------WLAI 143 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~-~~~~~~------------------~~~~ 143 (312)
++++.+|.+..+.++.. +...++..++.++.+++.||+|++..+.... ...++. .++.
T Consensus 225 ~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILF---ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301 (375)
T ss_dssp SSHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence 44555888888899988 9999999999999999999999843332221 111000 0000
Q ss_pred HHhcc-----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Q 048699 144 AFSKQ-----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV----VSCLVLALI 195 (312)
Q Consensus 144 ~~~~~-----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~w~~~~~~ 195 (312)
++... ...++.|..| ++|+++.++.+....+|..+++.+... .+|...+++
T Consensus 302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 11100 4466788888 899999999999999998888766533 345555544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.69 E-value=3e-05 Score=71.34 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhh----hhcChh----HHHHHHHHHHHHHHHHHHHhc---------c---------
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIA----DLTGQR----CAMRLSDLFCILGWLAIAFSK---------Q--------- 148 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~----dr~Grk----~~~~~~~~~~~~~~~~~~~~~---------~--------- 148 (312)
.+++. ....++..++.++.+++. +|.|+| +.+.++.++.+++.++.++.. +
T Consensus 337 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
T 2xut_A 337 PAMMQ---ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYA 413 (524)
T ss_dssp HHHHH---TTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 45555 555566677777777664 555432 455566666666555444321 1
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.|..|++.||+++++.++...+|..+++.+.
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999988888776
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=59.67 E-value=4.3 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.4
Q ss_pred hHHhhhhhcChhHH
Q 048699 115 INGKIADLTGQRCA 128 (312)
Q Consensus 115 ~~g~l~dr~Grk~~ 128 (312)
++|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.97 E-value=1.9e+02 Score=22.36 Aligned_cols=24 Identities=8% Similarity=-0.136 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChh
Q 048699 103 LLMTIGAISGSLINGKIADLTGQR 126 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk 126 (312)
..+.+|..++..+.|++.+|..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 567778888888888888886543
Done!