Query 048699
Match_columns 312
No_of_seqs 277 out of 2768
Neff 10.0
Searched_HMMs 13730
Date Mon Mar 25 21:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048699.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048699hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.8 1.3E-20 9.2E-25 168.7 9.8 159 43-215 20-209 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.3 1.3E-11 9.1E-16 107.3 11.2 68 78-148 27-95 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.1 2E-11 1.5E-15 105.9 6.1 121 88-211 254-401 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.0 7.6E-10 5.6E-14 97.5 10.2 126 80-208 272-428 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 12.5 75 0.0055 14.4 3.0 8 208-215 21-28 (30)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 11.7 1.2E+02 0.0089 16.4 3.3 34 159-192 8-41 (53)
7 d1h2sa_ f.13.1.1 (A:) Sensory 8.0 3.6E+02 0.026 19.1 10.3 38 104-141 10-49 (225)
8 d1v54k_ f.23.5.1 (K:) Mitochon 7.6 1.8E+02 0.013 15.3 3.5 6 121-126 6-11 (49)
9 d3proc1 d.52.1.1 (C:6-85) Alph 6.7 2.5E+02 0.018 16.6 3.4 40 82-124 5-44 (80)
10 d3b45a1 f.51.1.1 (A:91-270) Gl 6.6 3.6E+02 0.026 18.0 5.3 39 107-145 62-101 (180)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.82 E-value=1.3e-20 Score=168.68 Aligned_cols=159 Identities=12% Similarity=-0.003 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
++.+|.+.+.+.++++...+ +...++...|.+. ++|++.++.+++. +.+.++.+++++++|+++||
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~----------~~~~~~~~~p~~~-~~g~s~~~~g~~~---s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYL----------VRKNFALAMPYLV-EQGFSRGDLGFAL---SGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHTSHHHHHHHTT-SSTTCSSCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HhCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666 5555566677776 5899999999999 99999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhc----c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSK----Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGL 177 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~----~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~ 177 (312)
+|||+++.++.++.+++.++++++. + ...++.|++|+++|++++++.+.+..+|.
T Consensus 86 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 165 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence 9999999999999999888877653 2 44688999999999999999999999998
Q ss_pred HHHHHhhh-----hHHHHHHHHHHHHHHHHHHHH-hhcccCChH
Q 048699 178 SVTYLVGT-----VVSCLVLALIAAVPCLLQVVG-LFFIPEIAQ 215 (312)
Q Consensus 178 ~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~-~~~~pes~~ 215 (312)
.+++.++. ..+||+.+++.+++.++..+. .++.++.|+
T Consensus 166 ~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 166 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp TSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 88776552 237999988877776655444 455566554
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.26 E-value=1.3e-11 Score=107.26 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=58.0
Q ss_pred CCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 78 SPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
.+..| ++.+++|++.++.|++. +++.++..++++++|+++||+|||++++++.++..++..+..+..+
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~i~---s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T d1pv7a_ 27 FPFFPIWLHDINHISKSDTGIIF---AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred HHHHHHHHHHccCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444 46778999999999999 9999999999999999999999999999988888877776665443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.13 E-value=2e-11 Score=105.92 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=93.7
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------------
Q 048699 88 LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------- 148 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------- 148 (312)
.+.+....+... +...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++
T Consensus 254 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 254 GEQGTRVFGYVT---TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccc---cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 344455556666 8888999999999999999999999999999999888888877766
Q ss_pred --cceeeeecCCCCchhHHHHHH-HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hccc
Q 048699 149 --IPIYITEIAPKNVRGAYTATN-QLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIP 211 (312)
Q Consensus 149 --~~~~i~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~p 211 (312)
...++.|.+|++.|++..++. ++...+|..+++.+. +..|++..+++.+++.++..+.. +.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999974 455666666665554 66789999988877766655544 4443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.98 E-value=7.6e-10 Score=97.50 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh---c--c------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS---K--Q------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~---~--~------ 148 (312)
...++.+.++.+..+.++.. +...++.+++.++.|++.||++||+......+...+..+..... . +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 348 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred hhhhcccccccccchhhhhh---hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHH
Confidence 34566777899999999999 99999999999999999999998754433332222221111111 0 0
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...+..|.+|++.|+++.++.+....+ |.++++.+. +..||+..+++.++.++++.+...
T Consensus 349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999988776555 445555554 456889888877766666554443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.49 E-value=75 Score=14.40 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=4.2
Q ss_pred hcccCChH
Q 048699 208 FFIPEIAQ 215 (312)
Q Consensus 208 ~~~pes~~ 215 (312)
.+.+|.|+
T Consensus 21 iffreppr 28 (30)
T d2axtt1 21 IFFREPPR 28 (30)
T ss_dssp HHTSCCCC
T ss_pred HHhcCCCC
Confidence 34566654
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.70 E-value=1.2e+02 Score=16.40 Aligned_cols=34 Identities=6% Similarity=-0.215 Sum_probs=16.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 048699 159 KNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVL 192 (312)
Q Consensus 159 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~ 192 (312)
+++...+....-.....|...+-.+....+||.+
T Consensus 8 ~k~~~ia~~wips~~~~G~a~gl~lvy~TDWkli 41 (53)
T d2fyuk1 8 PRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhheeeeeeehHHHH
Confidence 3444444444444444555444444455567753
No 7
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=7.95 E-value=3.6e+02 Score=19.15 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHhhhhhc--ChhHHHHHHHHHHHHHHH
Q 048699 104 LMTIGAISGSLINGKIADLT--GQRCAMRLSDLFCILGWL 141 (312)
Q Consensus 104 ~~~~~~~ig~~~~g~l~dr~--Grk~~~~~~~~~~~~~~~ 141 (312)
+..+++.++.+++-....+- ++|+.......+..++.+
T Consensus 10 v~~~~m~~~tv~F~~~~~~~~~~~r~~~~~~~~It~iAa~ 49 (225)
T d1h2sa_ 10 LGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAV 49 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccchhhHHHHHHHHHHHH
Confidence 33444444554444444332 344444444444444433
No 8
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.55 E-value=1.8e+02 Score=15.30 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=3.5
Q ss_pred hhcChh
Q 048699 121 DLTGQR 126 (312)
Q Consensus 121 dr~Grk 126 (312)
||||.-
T Consensus 6 dKYGn~ 11 (49)
T d1v54k_ 6 DKYGNA 11 (49)
T ss_dssp HHHHHH
T ss_pred cccCcE
Confidence 566654
No 9
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=6.70 E-value=2.5e+02 Score=16.59 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=24.6
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G 124 (312)
..++.++|+++.+..--. ..-.-..-+-.-+-.-+.++||
T Consensus 5 ~AmqRDLgLt~~qa~~RL---a~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 5 FAMQRDLGIFPTQLPQYL---QTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHCCCGGGHHHHH---HHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcc
Confidence 346788999988876555 4444444455555555555554
No 10
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=6.62 E-value=3.6e+02 Score=17.97 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=23.1
Q ss_pred HHHHHHHHhHH-hhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 048699 107 IGAISGSLING-KIADLTGQRCAMRLSDLFCILGWLAIAF 145 (312)
Q Consensus 107 ~~~~ig~~~~g-~l~dr~Grk~~~~~~~~~~~~~~~~~~~ 145 (312)
+..++.....| .+-+++|+|+.+.+-.+....+.+...+
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~ 101 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHH
Confidence 33344444555 5555789988876655555555555444
Done!