BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048702
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 37/316 (11%)
Query: 9 IRTKKTRAVGVPTIDL-SLEN-----KELLIKQIVSACEEYGFFKVTNHGVPREIISRLE 62
+ KK VPTIDL ++E+ +E I+++ A ++G + NHG+P +++ R++
Sbjct: 37 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 96
Query: 63 DEGVDFFDKPVREKQR----AGPACPLGYGSRNIGFNGDSGELE---YLLLHANPTSIAE 115
G +FF V EK++ GYGS+ N SG+LE Y A P E
Sbjct: 97 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA--NNASGQLEWEDYFFHLAYP----E 150
Query: 116 RSKTIS---NDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDS 172
+ +S P + A ++Y +R L ++ + GLG+ RL ++V
Sbjct: 151 EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP----DRLEKEVGGLE 206
Query: 173 IL----RLNHYPPVEDWDPHNS-RVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVP 227
L ++N+YP P +G H+D LT + N V G Q+ +G WV
Sbjct: 207 ELLLQMKINYYPKC----PQPELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAK 261
Query: 228 PDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITS-LPETV 286
P + +GD L++L+NG+++S+ HR + N R+S F PP D + LPE V
Sbjct: 262 CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 321
Query: 287 SLQRPSLYMPFTWGEY 302
S++ P+ + P T+ ++
Sbjct: 322 SVESPAKFPPRTFAQH 337
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 37/316 (11%)
Query: 9 IRTKKTRAVGVPTIDL-SLEN-----KELLIKQIVSACEEYGFFKVTNHGVPREIISRLE 62
+ KK VPTIDL ++E+ +E I+++ A ++G + NHG+P +++ R++
Sbjct: 36 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 95
Query: 63 DEGVDFFDKPVREKQR----AGPACPLGYGSRNIGFNGDSGELE---YLLLHANPTSIAE 115
G +FF V EK++ GYGS+ N SG+LE Y A P E
Sbjct: 96 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA--NNASGQLEWEDYFFHLAYP----E 149
Query: 116 RSKTIS---NDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDS 172
+ +S P + A ++Y +R L ++ + GLG+ RL ++V
Sbjct: 150 EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP----DRLEKEVGGLE 205
Query: 173 IL----RLNHYPPVEDWDPHNS-RVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVP 227
L ++N+YP P +G H+D LT + N V G Q+ +G WV
Sbjct: 206 ELLLQMKINYYPKC----PQPELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAK 260
Query: 228 PDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITS-LPETV 286
P + +GD L++L+NG+++S+ HR + N R+S F PP D + LPE V
Sbjct: 261 CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 320
Query: 287 SLQRPSLYMPFTWGEY 302
S++ P+ + P T+ ++
Sbjct: 321 SVESPAKFPPRTFAQH 336
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 37/316 (11%)
Query: 9 IRTKKTRAVGVPTIDL-SLEN-----KELLIKQIVSACEEYGFFKVTNHGVPREIISRLE 62
+ KK VPTIDL ++E+ +E I+++ A ++G + NHG+P ++ R++
Sbjct: 37 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVK 96
Query: 63 DEGVDFFDKPVREKQR----AGPACPLGYGSRNIGFNGDSGELE---YLLLHANPTSIAE 115
G +FF V EK++ GYGS+ N SG+LE Y A P E
Sbjct: 97 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA--NNASGQLEWEDYFFHLAYP----E 150
Query: 116 RSKTIS---NDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDS 172
+ +S P + A ++Y +R L ++ + GLG+ RL ++V
Sbjct: 151 EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP----DRLEKEVGGLE 206
Query: 173 IL----RLNHYPPVEDWDPHNS-RVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVP 227
L ++N+YP P +G H+D LT + N V G Q+ +G WV
Sbjct: 207 ELLLQXKINYYPKC----PQPELALGVEAHTDVSALTFILHNXVPGLQL-FYEGKWVTAK 261
Query: 228 PDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITS-LPETV 286
P +GD L++L+NG+++S+ HR + N R+S F PP D + LPE V
Sbjct: 262 CVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXV 321
Query: 287 SLQRPSLYMPFTWGEY 302
S++ P+ + P T+ ++
Sbjct: 322 SVESPAKFPPRTFAQH 337
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 13/280 (4%)
Query: 36 IVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFN 95
I ACE +GFF++ NHG+PRE+ +E + K ++ + A G + +
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTD 83
Query: 96 GDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGV 155
D E + L H ++I+E + + ++ D+ + L E+LDL E LG+
Sbjct: 84 XD-WESTFFLKHLPISNISE----VPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGL 138
Query: 156 RDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQ-ILTLLRSNNVGGF 214
++ + + ++++YPP D G H+D I+ L + + V G
Sbjct: 139 EKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK---GLRAHTDAGGIILLFQDDKVSGL 195
Query: 215 QIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPP 274
Q+ L DG W+ VPP V +GD L+V+TNG+++SV HR I +R S+ F P
Sbjct: 196 QL-LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPG 254
Query: 275 LDAWITSLP---ETVSLQRPSLYMPFTWGEYKKAVYSLRL 311
DA I P E + + +Y F + +Y K L+
Sbjct: 255 SDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKF 294
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 17/248 (6%)
Query: 34 KQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIG 93
K+ V + E GF ++NH + +E++ R+ E FF+ + + G+ +I
Sbjct: 16 KRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASIS 75
Query: 94 FNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILD----LA 149
++ + + + ++ + L + AN L E+L+ +
Sbjct: 76 ETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKAN-------TLASELLEWIETYS 128
Query: 150 AEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSN 209
+ + + I + H ++LR+ HYPP D + H D ++T+L +
Sbjct: 129 PDEIKAKFSIPLPEXIANSHK-TLLRILHYPPXTG-DEEXGAIRAAAHEDINLITVLPTA 186
Query: 210 NVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAI----TNSLNSRM 265
N G Q++ DG W+ VP D + +GD LQ ++G F S HR I T+ SR+
Sbjct: 187 NEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRI 246
Query: 266 SMVYFGAP 273
S+ F P
Sbjct: 247 SLPLFLHP 254
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 121/296 (40%), Gaps = 22/296 (7%)
Query: 14 TRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPV 73
T A+ + L ++ +++ ++ E YGF ++++ + + I D FF PV
Sbjct: 4 TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPV 63
Query: 74 REKQRAGPACPLGYGSRNIGFNGDSGELEYLL---LHAN---PTSIAERSKTISN----D 123
K++ G G G Y L H P R+ N +
Sbjct: 64 ETKKQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAE 123
Query: 124 PLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVE 183
F + +++ G ++L+ A L + +R F ++D +S+LRL HYPP+
Sbjct: 124 IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKL-ERDFFKPTVQD--GNSVLRLLHYPPI- 179
Query: 184 DWDPHNSR-VGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQ 242
P ++ V G H D +TLL GG ++ DG W+P+ P P + +GD L+
Sbjct: 180 ---PKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLE 236
Query: 243 VLTNGRFRSVRHRAITNSLN----SRMSMVYFGAPPLDAWITSLPETVSLQRPSLY 294
LTN S HR + R S +F D I +L V+ + P Y
Sbjct: 237 RLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 46/275 (16%)
Query: 17 VGVPTIDLS------LENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDE------ 64
VP ID+S K + +QI +A + GFF NHG+ + +S+ E
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 65 -------GVDFFDKPVREKQRAGPACPL-------GYGSRNIGFNGDSGELEYLLLHANP 110
+ ++K +++ RAG + + N F D ++ P
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ----AKTP 122
Query: 111 TSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHS 170
T + P F A Y V GL+ +L A LG + F F+R + +
Sbjct: 123 THEVNVWPDETKHP-GFQDFAEQYYWDVFGLSSALLKGYALALGKEENF-FARHFKPDDT 180
Query: 171 DSILRLNHYPPVEDWDPH----------NSRVGFGDHSDPQILTLLRSNNVGGFQIRLND 220
+ + L YP + DP+ +++ F H D ++T+L +NV Q+
Sbjct: 181 LASVVLIRYPYL---DPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 221 GLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHR 255
G + + D TG+ + G + LTN +++ HR
Sbjct: 238 G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 46/275 (16%)
Query: 17 VGVPTIDLS------LENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDE------ 64
VP ID+S K + +QI +A + GFF NHG+ + +S+ E
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 65 -------GVDFFDKPVREKQRAGPACPL-------GYGSRNIGFNGDSGELEYLLLHANP 110
+ ++K +++ RAG + + N F D ++ P
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ----AKTP 122
Query: 111 TSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHS 170
T + P F A Y V GL+ +L A LG + F F+R + +
Sbjct: 123 THEVNVWPDETKHP-GFQDFAEQYYWDVFGLSSALLKGYALALGKEENF-FARHFKPDDT 180
Query: 171 DSILRLNHYPPVEDWDPH----------NSRVGFGDHSDPQILTLLRSNNVGGFQIRLND 220
+ + L YP + DP+ +++ F H D ++T+L +NV Q+
Sbjct: 181 LASVVLIRYPYL---DPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 221 GLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHR 255
G + + D TG+ + G + LTN +++ HR
Sbjct: 238 G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 19 VPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQR 78
VPT L+ + L + + G F +T+ G+ + +D +DFF+ ++R
Sbjct: 5 VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKR 64
Query: 79 AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTIS---NDPL----KFSRAA 131
A + P+ R GF G E + N S ++ S S D L F R
Sbjct: 65 AVTS-PVPTMRR--GFTGLESESTAQI--TNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 132 NDYVH----AVRGLTCEIL-DLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPV-EDW 185
Y A R + E+L E G + F+ + +LR ++P V E
Sbjct: 120 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--------DCEPLLRFRYFPQVPEHR 171
Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLN---DGLWVPVPPDPTGFYVLVGDALQ 242
+ H D ++TL++ + L G + +P P V G
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 243 VLTNGRFRSVRH-----RAITNSLNSRMSMVYFGAPPLD 276
++T G+ ++ RH R + +SR S V+F P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 19 VPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQR 78
VPT L+ + L + + G F +T+ G+ + +D +DFF+ ++R
Sbjct: 5 VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKR 64
Query: 79 AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTIS---NDPL----KFSRAA 131
A + P+ R GF G E + N S ++ S S D L F R
Sbjct: 65 AVTS-PVPTMRR--GFTGLESESTAQI--TNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 132 NDYVH----AVRGLTCEIL-DLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPV-EDW 185
Y A R + E+L E G + F+ + +LR ++P V E
Sbjct: 120 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--------DCEPLLRFRYFPQVPEHR 171
Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLN---DGLWVPVPPDPTGFYVLVGDALQ 242
+ H D ++TL++ + L G + +P P V G
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 243 VLTNGRFRSVRH-----RAITNSLNSRMSMVYFGAPPLD 276
++T G+ ++ RH R + +SR S V+F P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 19 VPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQR 78
VPT L+ + L + + G F +T+ G+ + +D +DFF+ ++R
Sbjct: 25 VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKR 84
Query: 79 AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTIS---NDPL----KFSRAA 131
A + P+ R GF G E + N S ++ S S D L F R
Sbjct: 85 AVTS-PVPTMRR--GFTGLESESTAQI--TNTGSYSDYSMCYSMGTADNLFPSGDFERIW 139
Query: 132 NDYVH----AVRGLTCEIL-DLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPV-EDW 185
Y A R + E+L E G + F+ + +LR ++P V E
Sbjct: 140 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--------DCEPLLRFRYFPQVPEHR 191
Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLN---DGLWVPVPPDPTGFYVLVGDALQ 242
+ H D ++TL++ + L G + +P P V G
Sbjct: 192 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 251
Query: 243 VLTNGRFRSVRH-----RAITNSLNSRMSMVYFGAPPLD 276
++T G+ ++ RH R + +SR S V+F P D
Sbjct: 252 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 19 VPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQR 78
VPT L+ + L + + G F +T+ G+ + +D +DFF+ ++R
Sbjct: 5 VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKR 64
Query: 79 AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTIS---NDPL----KFSRAA 131
A + P+ R GF G E + N S ++ S S D L F R
Sbjct: 65 AVTS-PVPTMRR--GFTGLESESTAQI--TNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 132 NDYVH----AVRGLTCEIL-DLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPV-EDW 185
Y A R + E+L E G + F+ + +LR ++P V E
Sbjct: 120 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--------DCEPLLRFRYFPQVPEHR 171
Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLN---DGLWVPVPPDPTGFYVLVGDALQ 242
+ H D ++TL++ + L G + +P P V G
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 243 VLTNGRFRSVRH-----RAITNSLNSRMSMVYFGAPPLD 276
++T G+ ++ RH R + +SR S V+F P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 19 VPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQR 78
VPT L+ + L + + G F +T+ G+ + +D +DFF+ ++R
Sbjct: 5 VPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKR 64
Query: 79 AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTIS---NDPL----KFSRAA 131
A + P+ R GF G E + N S ++ S S D L F R
Sbjct: 65 AVTS-PVPTMRR--GFTGLESESTAQI--TNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 132 NDYVH----AVRGLTCEIL-DLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPV-EDW 185
Y A R + E+L E G + F+ + +LR ++P V E
Sbjct: 120 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--------DCEPLLRFRYFPQVPEHR 171
Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLN---DGLWVPVPPDPTGFYVLVGDALQ 242
+ H D ++TL++ + L G + +P P V G
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 243 VLTNGRFRSVRH-----RAITNSLNSRMSMVYFGAPPLD 276
++T G+ ++ RH R + +S+ S V+F P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|2OEW|A Chain A, Structure Of AlixAIP1 BRO1 DOMAIN
pdb|3C3O|A Chain A, Alix Bro1-Domain:chmip4a Co-Crystal Structure
pdb|3C3Q|A Chain A, Alix Bro1-domain:chmip4b Co-crystal Structure
pdb|3C3R|A Chain A, Alix Bro1 Chmp4c Complex
Length = 380
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 20 PTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQ 77
PT+D+S + L +++ +E F K T + II++L ++ D+F ++ Q
Sbjct: 196 PTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ 253
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 20 PTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQ 77
PT+D+S + L +++ +E F K T + II++L ++ D+F ++ Q
Sbjct: 181 PTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ 238
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 20 PTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQ 77
PT+D+S + L +++ +E F K T + II++L ++ D+F ++ Q
Sbjct: 182 PTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ 239
>pdb|2GHA|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHA|B Chain B, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHB|A Chain A, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|B Chain B, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|C Chain C, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
Length = 382
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 191 RVGFGDHSDPQ---ILTLLRSN-NVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTN 246
R+ GD P +L L++ N +V GF + +G+ +P P + + DAL ++ N
Sbjct: 294 RIYLGDPRLPSRKDVLELVKDNPDVVGFTLSAANGIPMPNVPQMAAVWAAMNDALNLVVN 353
Query: 247 GRFRSVRHRAITNSL 261
G ++ A+ N++
Sbjct: 354 G--KATVEEALKNAV 366
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 20 PTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQ 77
PT+D+S + L +++ +E F K T + II++L ++ D+F ++ Q
Sbjct: 174 PTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ 231
>pdb|3DR4|A Chain A, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|B Chain B, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|C Chain C, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|D Chain D, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
Length = 391
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 97 DSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYV---HAV---RGLTCEILDLAA 150
D E +Y+L + T I+ + I ++F +A DY HA+ G T L L A
Sbjct: 35 DGNERDYVLECMDTTWISSVGRFI----VEFEKAFADYCGVKHAIACNNGTTALHLALVA 90
Query: 151 EGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDP 187
G+G D + L ++S+ P + D DP
Sbjct: 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP 127
>pdb|3DR7|A Chain A, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|B Chain B, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|C Chain C, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|D Chain D, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
Length = 391
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 97 DSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYV---HAV---RGLTCEILDLAA 150
D E +Y+L + T I+ + I ++F +A DY HA+ G T L L A
Sbjct: 35 DGNERDYVLECMDTTWISSVGRFI----VEFEKAFADYCGVKHAIACNNGTTALHLALVA 90
Query: 151 EGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDP 187
G+G D + L ++S+ P + D DP
Sbjct: 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP 127
>pdb|3BN1|A Chain A, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|B Chain B, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|C Chain C, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|D Chain D, Crystal Structure Of Gdp-Perosamine Synthase
Length = 373
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 97 DSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYV---HAV---RGLTCEILDLAA 150
D E +Y+L + T I+ + I ++F +A DY HA+ G T L L A
Sbjct: 17 DGNERDYVLECMDTTWISSVGRFI----VEFEKAFADYCGVKHAIACNNGTTALHLALVA 72
Query: 151 EGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDP 187
G+G D + L ++S+ P + D DP
Sbjct: 73 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,137,962
Number of Sequences: 62578
Number of extensions: 431483
Number of successful extensions: 882
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 32
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)