Query 048703
Match_columns 361
No_of_seqs 232 out of 1470
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g3n_C V-cyclin; cyclin-depend 100.0 1.4E-37 4.8E-42 293.4 11.6 154 204-360 5-158 (257)
2 2f2c_A Cyclin homolog, V-cycli 100.0 2.8E-37 9.4E-42 290.9 11.2 152 206-360 8-159 (254)
3 1f5q_B Gamma herpesvirus cycli 100.0 3.5E-37 1.2E-41 291.0 9.1 149 204-360 8-156 (252)
4 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-36 3.8E-41 294.9 12.0 150 209-360 29-178 (306)
5 1w98_B Cyclin E, G1/S-specific 100.0 7.5E-36 2.6E-40 285.9 13.7 151 209-360 7-158 (283)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 8E-36 2.7E-40 281.9 12.6 144 216-360 3-146 (260)
7 2b9r_A Human cyclin B1; cell c 100.0 5.9E-36 2E-40 284.4 9.4 146 214-361 1-146 (269)
8 2w96_A G1/S-specific cyclin-D1 100.0 5.6E-35 1.9E-39 277.7 12.8 152 206-360 13-164 (271)
9 2i53_A Cyclin K; cell cycle, t 99.9 3.7E-25 1.3E-29 207.8 5.1 122 238-360 26-158 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.9 8.2E-25 2.8E-29 205.7 5.3 121 239-360 17-153 (257)
11 2pk2_A Cyclin-T1, protein TAT; 99.9 5E-24 1.7E-28 210.4 2.1 121 239-360 24-160 (358)
12 3rgf_B Cyclin-C; protein kinas 99.9 5.9E-23 2E-27 196.6 6.5 115 246-360 36-164 (285)
13 1zp2_A RNA polymerase II holoe 99.9 2.9E-22 9.9E-27 186.2 9.3 107 253-360 28-141 (235)
14 1jkw_A Cyclin H; cell cycle, c 99.8 5.5E-21 1.9E-25 186.1 7.3 115 245-360 49-170 (323)
15 1c9b_A General transcription f 99.6 4.1E-16 1.4E-20 141.8 8.3 107 252-361 4-110 (207)
16 1ais_B TFB TFIIB, protein (tra 99.4 1E-12 3.4E-17 118.6 7.6 107 252-361 8-116 (200)
17 3k7a_M Transcription initiatio 98.9 8E-10 2.7E-14 108.2 5.8 105 254-361 127-243 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 98.5 1.1E-07 3.9E-12 90.8 7.6 101 256-359 77-180 (293)
19 4bbr_M Transcription initiatio 98.0 4.1E-06 1.4E-10 82.0 5.5 104 255-361 128-243 (345)
20 1ais_B TFB TFIIB, protein (tra 95.9 0.012 4.1E-07 52.2 6.5 88 258-348 110-197 (200)
21 1c9b_A General transcription f 91.5 0.24 8.1E-06 44.0 5.5 86 257-345 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 83.4 1.2 4.1E-05 40.7 4.9 87 258-344 148-238 (257)
23 2pk2_A Cyclin-T1, protein TAT; 83.1 1 3.4E-05 43.8 4.5 88 258-345 155-246 (358)
24 2i53_A Cyclin K; cell cycle, t 79.4 1.3 4.3E-05 40.4 3.6 88 258-345 153-250 (258)
25 3k7a_M Transcription initiatio 77.6 0.46 1.6E-05 45.9 0.0 55 258-312 237-291 (345)
26 3rgf_B Cyclin-C; protein kinas 76.8 1 3.5E-05 42.1 2.1 82 258-344 159-240 (285)
27 1zp2_A RNA polymerase II holoe 75.5 0.54 1.9E-05 42.5 -0.1 84 258-345 136-219 (235)
28 4bbr_M Transcription initiatio 68.3 1 3.6E-05 43.5 0.0 67 256-323 235-301 (345)
29 2cch_B Cyclin A2, cyclin-A; co 67.6 4.7 0.00016 36.8 4.3 85 257-344 140-226 (260)
30 1g3n_C V-cyclin; cyclin-depend 66.7 5.9 0.0002 36.1 4.8 86 257-344 152-246 (257)
31 2b9r_A Human cyclin B1; cell c 65.6 2.4 8.3E-05 39.1 1.9 81 258-341 140-220 (269)
32 2f2c_A Cyclin homolog, V-cycli 65.4 6.6 0.00023 35.7 4.8 85 258-344 154-246 (254)
33 3h4c_A Transcription factor TF 54.9 22 0.00076 32.2 6.1 81 255-337 14-97 (260)
34 3g33_B CCND3 protein; Ser/Thr 53.2 13 0.00046 34.9 4.8 86 259-346 174-267 (306)
35 1jkw_A Cyclin H; cell cycle, c 50.9 11 0.00036 35.9 3.7 76 270-345 184-260 (323)
36 2w96_A G1/S-specific cyclin-D1 47.7 14 0.0005 33.7 3.9 90 257-348 158-259 (271)
37 3ul0_C Nuclear CAP-binding pro 27.4 34 0.0012 20.1 1.8 19 53-77 4-22 (26)
38 1w98_B Cyclin E, G1/S-specific 22.4 95 0.0032 28.4 4.9 60 273-342 179-238 (283)
No 1
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.4e-37 Score=293.40 Aligned_cols=154 Identities=24% Similarity=0.460 Sum_probs=140.0
Q ss_pred ccCCCCCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 048703 204 VDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDW 283 (361)
Q Consensus 204 ~did~~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DR 283 (361)
.+++.+..||+++++ +||| +|+..|.++.|+++|+...|++|++.||.++||||++++..|++.++|+|+||+||||
T Consensus 5 ~~~~~~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DR 81 (257)
T 1g3n_C 5 NNPPSGLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81 (257)
T ss_dssp -----------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCccCCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 346678899999987 9999 9999999999999999767999999999999999999999999999999999999999
Q ss_pred hhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 284 FLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 284 fLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
|++...+.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|
T Consensus 82 fls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.8e-37 Score=290.95 Aligned_cols=152 Identities=18% Similarity=0.334 Sum_probs=144.0
Q ss_pred CCCCCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q 048703 206 IDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFL 285 (361)
Q Consensus 206 id~~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfL 285 (361)
++.+..||+++++ +|||. |+..|.++.|+++||+..|++|++.||.++||||++++..|+++++|+|+||+|||||+
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfl 84 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYL 84 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 4457789999988 99999 99999999999999986799999999999999999999999999999999999999999
Q ss_pred hcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 286 CQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 286 s~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
+...+.+.++||+|+||||||+|+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|
T Consensus 85 s~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~ 159 (254)
T 2f2c_A 85 CKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPL 159 (254)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHH
T ss_pred ccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988
No 3
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.5e-37 Score=291.04 Aligned_cols=149 Identities=17% Similarity=0.289 Sum_probs=141.2
Q ss_pred ccCCCCCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 048703 204 VDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDW 283 (361)
Q Consensus 204 ~did~~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DR 283 (361)
..++....||+++.+ +||.+|++.|.++.| + ..|++|++.||.++||||++|+..|+|.++|+|+||+||||
T Consensus 8 ~~~~~~~~dp~l~~d---~i~~~l~~~E~~~~p----~-~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDR 79 (252)
T 1f5q_B 8 GFLDSSLLNEEDCRQ---MIYRSEREHDARMVG----V-NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDE 79 (252)
T ss_dssp SSCSCTTCCHHHHHH---HHHHHHHHHHHHHSS----S-SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCcCcCCHHHhHH---HHHHHHHHHHHHhCc----C-ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 346678889999854 999999999999987 2 35889999999999999999999999999999999999999
Q ss_pred hhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 284 FLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 284 fLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
||+...+.+.++||+|+||||||+|+||..+|.+++|++++++.|+.++|++||+.||++|+|+|+.|||++||++|
T Consensus 80 fLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 80 LFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=294.87 Aligned_cols=150 Identities=29% Similarity=0.463 Sum_probs=140.0
Q ss_pred CCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcC
Q 048703 209 DHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQN 288 (361)
Q Consensus 209 ~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~ 288 (361)
...||.++ |.++||++|+..|.++.|.++|++.+|++|++.||.++|+||++++..|+|+++|+|+||+||||||++.
T Consensus 29 a~~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~ 106 (306)
T 3g33_B 29 AGPDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV 106 (306)
T ss_dssp ----------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC
T ss_pred cCCCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC
Confidence 56889887 9999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 289 YIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 289 ~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
.+.+.++||+|+||||||+|+||..+|.+++|++++++.|+.++|++||+.||++|+|+|+.|||++||++|
T Consensus 107 ~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~ 178 (306)
T 3g33_B 107 PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFI 178 (306)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.5e-36 Score=285.86 Aligned_cols=151 Identities=30% Similarity=0.531 Sum_probs=146.1
Q ss_pred CCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhc-
Q 048703 209 DHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQ- 287 (361)
Q Consensus 209 ~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~- 287 (361)
...||.++++|.+|||.+|+..|.++.|.++|++. |++|++.||..+++||++++..|++.++|+|+||+|||||++.
T Consensus 7 ~~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~ 85 (283)
T 1w98_B 7 GSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ 85 (283)
T ss_dssp -CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcchhhcCHHHHHHHHHHHHHHhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999986 9999999999999999999999999999999999999999998
Q ss_pred CccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 288 NYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 288 ~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
..+.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|
T Consensus 86 ~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f 158 (283)
T 1w98_B 86 ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVY 158 (283)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=8e-36 Score=281.85 Aligned_cols=144 Identities=48% Similarity=0.763 Sum_probs=141.3
Q ss_pred hhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCe
Q 048703 216 CSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRL 295 (361)
Q Consensus 216 ~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~l 295 (361)
+.+|.+|||.+|+..|.++.|.++||+. |++|++.||..++|||++++..|+++++|+++||+|||||++...+.+.++
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 81 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL 81 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 6799999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 296 QLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 296 qLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
||+|+||||||+|+||..+|.+.+|+.++++.|+.++|.+||+.||++|+|+++.|||++||.+|
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 146 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQY 146 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=5.9e-36 Score=284.41 Aligned_cols=146 Identities=41% Similarity=0.737 Sum_probs=137.1
Q ss_pred chhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCcc
Q 048703 214 QLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQ 293 (361)
Q Consensus 214 ~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~ 293 (361)
|+|++|.+|||++|+..|.++.|+++|++. | +|++.||..+++||++++..|+++++|+++||+|||||++...+.+.
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~ 78 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK 78 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH
Confidence 689999999999999999999999999986 6 99999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhhC
Q 048703 294 RLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN 361 (361)
Q Consensus 294 ~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~Fs 361 (361)
++||+|+||||||||+||..+|.+++|+.++++.|+.++|.+||+.||++|+|+++.|||++||.+|.
T Consensus 79 ~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~ 146 (269)
T 2b9r_A 79 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRAS 146 (269)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999883
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=5.6e-35 Score=277.65 Aligned_cols=152 Identities=32% Similarity=0.529 Sum_probs=137.9
Q ss_pred CCCCCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q 048703 206 IDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFL 285 (361)
Q Consensus 206 id~~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfL 285 (361)
++....||.++ .+|||.+|+..|.++.|+++|+...|++|++.||..+++||++++..|+++.+|+++||+|||||+
T Consensus 13 ~~~~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 89 (271)
T 2w96_A 13 IRRAYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL 89 (271)
T ss_dssp C--------------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred cccCCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhC
Confidence 44467889887 679999999999999999999988899999999999999999999999999999999999999999
Q ss_pred hcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 286 CQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 286 s~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
+...+.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||.+|
T Consensus 90 s~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~ 164 (271)
T 2w96_A 90 SLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHF 164 (271)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.90 E-value=3.7e-25 Score=207.76 Aligned_cols=122 Identities=21% Similarity=0.340 Sum_probs=112.4
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCH
Q 048703 238 PNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRA 317 (361)
Q Consensus 238 ~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l 317 (361)
+++.++++++++..+|..+++||.+++..|+|+.+|+++|++|||||++...+...++|++|+||||||||+|| .++.+
T Consensus 26 ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l 104 (258)
T 2i53_A 26 PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKC 104 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccH
Confidence 56677778889999999999999999999999999999999999999999999999999999999999999999 58899
Q ss_pred HHHHHhh-----cCCC------CHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 318 EEFCFIT-----DNTY------SREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 318 ~~l~~i~-----~~~y------t~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
++|+..+ ++.| +.++|++||+.||+.|+|++..|||+.||.+|
T Consensus 105 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~ 158 (258)
T 2i53_A 105 KDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKY 158 (258)
T ss_dssp HHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHH
Confidence 9998654 3334 47899999999999999999999999999987
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.90 E-value=8.2e-25 Score=205.67 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=110.5
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHH
Q 048703 239 NFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAE 318 (361)
Q Consensus 239 ~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~ 318 (361)
+..++++.+....+|..+++||.+++..|+|+.+|+++|++|||||++.+.+...++|++|+||||||||+||. ++.++
T Consensus 17 s~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~ 95 (257)
T 2ivx_A 17 SRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLE 95 (257)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHH
Confidence 44555666777899999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHhh--------------cCCCC--HHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 319 EFCFIT--------------DNTYS--REEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 319 ~l~~i~--------------~~~yt--~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
+|+.++ ++.|+ .++|++||+.||++|+|++..|||+.||.+|
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~ 153 (257)
T 2ivx_A 96 HVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKC 153 (257)
T ss_dssp HHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHH
Confidence 998654 33455 8999999999999999999999999999987
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.88 E-value=5e-24 Score=210.41 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=109.9
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHH
Q 048703 239 NFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAE 318 (361)
Q Consensus 239 ~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~ 318 (361)
...+.++.+....+|..+++||.+++..|+|+.+|+++|++|||||++.+.+...++|+||+||||||+|+||. ++.++
T Consensus 24 S~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~ 102 (358)
T 2pk2_A 24 SRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLE 102 (358)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHH
Confidence 44555566777899999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHhh--------------cCCCC--HHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 319 EFCFIT--------------DNTYS--REEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 319 ~l~~i~--------------~~~yt--~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
+|+.++ ++.|+ .++|++||+.||++|+|+|.++||+.||.+|
T Consensus 103 d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~ 160 (358)
T 2pk2_A 103 HVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKC 160 (358)
T ss_dssp HHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHH
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHH
Confidence 998654 33454 7899999999999999999999999999987
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.87 E-value=5.9e-23 Score=196.55 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=106.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhc
Q 048703 246 RDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITD 325 (361)
Q Consensus 246 ~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~ 325 (361)
.+-...+|..+++||.+++..|+|+.+|+++|++|||||++.+.+...++|+||+||||||||+||...|.+++|+.++.
T Consensus 36 ~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 36 EEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999999999998889999987652
Q ss_pred --------------CCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 326 --------------NTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 326 --------------~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
..|+.++|++||+.||++|+|++.++||+.||.+|
T Consensus 116 ~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~ 164 (285)
T 3rgf_B 116 SVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQY 164 (285)
T ss_dssp HHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHH
T ss_pred HHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHH
Confidence 24789999999999999999999999999999987
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.9e-22 Score=186.20 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCc-cCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcC-----
Q 048703 253 RGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIER-QRLQLLGITCMLIASKYEEICAPRAEEFCFITDN----- 326 (361)
Q Consensus 253 R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~-~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~----- 326 (361)
|..+++||.+++..|+|+.+|+++|++|||||++.+.+.. .++|+||+||||||||+|| .++.+++|+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 58899999998865
Q ss_pred -CCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 327 -TYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 327 -~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
.++.++|.+||+.||+.|+|++..+||+.||.+|
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~ 141 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQA 141 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHH
Confidence 6899999999999999999999999999999987
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.82 E-value=5.5e-21 Score=186.13 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=105.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHH
Q 048703 245 QRDITQAMRGILVDWLVEVSEEYK--LVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCF 322 (361)
Q Consensus 245 Q~~It~~~R~~lIdwL~~v~~~~~--L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~ 322 (361)
.++-...+|...++||.++|..|+ |+.+|+++|++|||||++.+.+...++|+||+||||||||+||. ++.+++|+.
T Consensus 49 t~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~ 127 (323)
T 1jkw_A 49 EPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVG 127 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHH
Confidence 344455889999999999999999 99999999999999999999999999999999999999999997 679999987
Q ss_pred hhcC-----CCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703 323 ITDN-----TYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360 (361)
Q Consensus 323 i~~~-----~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F 360 (361)
.+.+ .|+.++|++||+.||+.|+|+|.++||+.||.+|
T Consensus 128 ~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~ 170 (323)
T 1jkw_A 128 NLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGF 170 (323)
T ss_dssp GSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHH
T ss_pred HhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHH
Confidence 6643 3678999999999999999999999999999876
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.63 E-value=4.1e-16 Score=141.76 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHH
Q 048703 252 MRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSRE 331 (361)
Q Consensus 252 ~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~ 331 (361)
......+||.+++..|+|+..|+..|+.||+||+..+.+...+.++++++|||||+|+||. ++++++|+.+++ ++..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 4557789999999999999999999999999999999999999999999999999999997 889999999887 8999
Q ss_pred HHHHHHHHHHHHcCceecCCCHHHHHHhhC
Q 048703 332 EVLKMESQVLKCLGFQLFVPTTKTFLRYFN 361 (361)
Q Consensus 332 eI~~mE~~IL~~L~w~L~~pTp~~FL~~Fs 361 (361)
+|.++|+.||+.|+|++..++|+.||.+|+
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~ 110 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFC 110 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHH
Confidence 999999999999999999999999999884
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.35 E-value=1e-12 Score=118.60 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHH
Q 048703 252 MRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSRE 331 (361)
Q Consensus 252 ~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~ 331 (361)
......+||.+++..++|+..+...|..||+||+....+.....+.++++|||||+|+|+ .+.++.|+..+++ ++..
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~ 84 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKK 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHH
Confidence 345788999999999999999999999999999999888888999999999999999999 6899999998876 8999
Q ss_pred HHHHHHHHHHHHcCceecC--CCHHHHHHhhC
Q 048703 332 EVLKMESQVLKCLGFQLFV--PTTKTFLRYFN 361 (361)
Q Consensus 332 eI~~mE~~IL~~L~w~L~~--pTp~~FL~~Fs 361 (361)
+|.++++.|++.|+|++.. ++|+.||.+|+
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~ 116 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFA 116 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHH
Confidence 9999999999999999999 99999999984
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.91 E-value=8e-10 Score=108.24 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHH
Q 048703 254 GILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEV 333 (361)
Q Consensus 254 ~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI 333 (361)
.....+|..++..++|+..+.-.|..||.||+....+.....+.|+++|||||+|.|+. +.++.+|+.+++ ++..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 46678899999999999999999999999999999898889999999999999999986 899999999876 889999
Q ss_pred HHHHHHHHHHcC------------ceecCCCHHHHHHhhC
Q 048703 334 LKMESQVLKCLG------------FQLFVPTTKTFLRYFN 361 (361)
Q Consensus 334 ~~mE~~IL~~L~------------w~L~~pTp~~FL~~Fs 361 (361)
.++++.|++.|+ |++..++|+.||.+|+
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~ 243 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFC 243 (345)
T ss_dssp HHHHHHHHHHHTCC--------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHH
Confidence 999999999999 9999999999999985
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.54 E-value=1.1e-07 Score=90.79 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcC---ccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHH
Q 048703 256 LVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQN---YIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREE 332 (361)
Q Consensus 256 lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~---~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~e 332 (361)
+-+||.++....+++.+++.+|+.|+||+.... .+...+.+-+-++||.+|+|+-+......+.+..+ ++++.+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cCcCHHH
Confidence 567899999999999999999999999999853 35567788888999999999999888888888887 4689999
Q ss_pred HHHHHHHHHHHcCceecCCCHHHHHHh
Q 048703 333 VLKMESQVLKCLGFQLFVPTTKTFLRY 359 (361)
Q Consensus 333 I~~mE~~IL~~L~w~L~~pTp~~FL~~ 359 (361)
|..||+..|..|+|+|.+. ...|..+
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~c 180 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLC 180 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHH
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHH
Confidence 9999999999999999865 4455443
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.02 E-value=4.1e-06 Score=82.02 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHH
Q 048703 255 ILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVL 334 (361)
Q Consensus 255 ~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~ 334 (361)
.....|.+++..++|+..+.-.|..||.+++....+.......++++|||||++.++ .+.++.+|..+++ .+..+|-
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHHH
Confidence 445678899999999999999999999999998888888899999999999999987 4789999998875 6789999
Q ss_pred HHHHHHHHHcCce------------ecCCCHHHHHHhhC
Q 048703 335 KMESQVLKCLGFQ------------LFVPTTKTFLRYFN 361 (361)
Q Consensus 335 ~mE~~IL~~L~w~------------L~~pTp~~FL~~Fs 361 (361)
+..+.|++.|+.. +....|.+|+.+|+
T Consensus 205 r~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~ 243 (345)
T 4bbr_M 205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFC 243 (345)
T ss_dssp HHHHHHHHCC-----------------------------
T ss_pred HHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHH
Confidence 9999999999974 66778999999885
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.95 E-value=0.012 Score=52.21 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKME 337 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE 337 (361)
++|..++..++++.++...|..|+.+.+....+......-++++|+++|++.... +.+.+++..+++ ++..+|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5677899999999999999999999999876677777888999999999998764 558889988875 6889999999
Q ss_pred HHHHHHcCcee
Q 048703 338 SQVLKCLGFQL 348 (361)
Q Consensus 338 ~~IL~~L~w~L 348 (361)
.++...|+..+
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=91.47 E-value=0.24 Score=43.98 Aligned_cols=86 Identities=7% Similarity=-0.006 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHH
Q 048703 257 VDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKM 336 (361)
Q Consensus 257 IdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~m 336 (361)
.++|..++..++++.++.-+|..+++.-+....+......-|+++|+++|++.... ..+.+++...+ .++..+|.+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~--~v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIA--GVADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHH--TCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHh--CCCHHHHHHH
Confidence 45677888999999999999999999988766566777888999999999998764 45677887665 4678888887
Q ss_pred HHHHHHHcC
Q 048703 337 ESQVLKCLG 345 (361)
Q Consensus 337 E~~IL~~L~ 345 (361)
=..|+..++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=83.38 E-value=1.2 Score=40.70 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhh-cCccCccCeEEEeeeehhhhhhhhccCCCCHH---HHHHhhcCCCCHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLC-QNYIERQRLQLLGITCMLIASKYEEICAPRAE---EFCFITDNTYSREEV 333 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs-~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~---~l~~i~~~~yt~~eI 333 (361)
+||..+...++.+.++..+|.+++..-+. ....-......||++|+++|+++.....|... ......+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 45666677788888888889888855442 22234556678999999999998765433211 122222446899999
Q ss_pred HHHHHHHHHHc
Q 048703 334 LKMESQVLKCL 344 (361)
Q Consensus 334 ~~mE~~IL~~L 344 (361)
...-..|+..+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 23
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.06 E-value=1 Score=43.82 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhh-cCccCccCeEEEeeeehhhhhhhhccCCCCH---HHHHHhhcCCCCHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLC-QNYIERQRLQLLGITCMLIASKYEEICAPRA---EEFCFITDNTYSREEV 333 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs-~~~v~~~~lqLvgitCL~IASK~EE~~~p~l---~~l~~i~~~~yt~~eI 333 (361)
+||..+...++++.++..+|.+++..-+. ....-......||++||+||+++.....|.. .......+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35556666778888888889888855442 2223445667899999999999876433321 1121222346899999
Q ss_pred HHHHHHHHHHcC
Q 048703 334 LKMESQVLKCLG 345 (361)
Q Consensus 334 ~~mE~~IL~~L~ 345 (361)
...-..||..++
T Consensus 235 ~~i~~~il~~y~ 246 (358)
T 2pk2_A 235 DELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=79.39 E-value=1.3 Score=40.43 Aligned_cols=88 Identities=10% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCch----HHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCH------HHHHHhhcCC
Q 048703 258 DWLVEVSEEYKLVP----DTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRA------EEFCFITDNT 327 (361)
Q Consensus 258 dwL~~v~~~~~L~~----eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l------~~l~~i~~~~ 327 (361)
+||...+..++.+. +...+|.++++.-+.....-......||++|+++|++......+.. ..........
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56777777888776 5788888998887765555566677899999999999865422211 1111111237
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 048703 328 YSREEVLKMESQVLKCLG 345 (361)
Q Consensus 328 yt~~eI~~mE~~IL~~L~ 345 (361)
++.++|...-..||....
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999988655
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.59 E-value=0.46 Score=45.89 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhcc
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEI 312 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~ 312 (361)
++|..++..++|+.++..+|..|+++.+....+......-||++|||||+.+...
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 7888999999999999999999999988765566677888999999999998654
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=76.80 E-value=1 Score=42.15 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKME 337 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE 337 (361)
++|...+..++++.++..+|.++++.-+....+-......||++|+++|++...... ...... -.++.++|...-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~--~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAE--LSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHT--SCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHH--HCCCHHHHHHHH
Confidence 566677778888889999999999876654444456667799999999999865422 233222 368888888888
Q ss_pred HHHHHHc
Q 048703 338 SQVLKCL 344 (361)
Q Consensus 338 ~~IL~~L 344 (361)
..||...
T Consensus 234 ~~il~ly 240 (285)
T 3rgf_B 234 RVILKLY 240 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=75.51 E-value=0.54 Score=42.53 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKME 337 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE 337 (361)
+||...+..++++.++..+|..+++.-+....+-......||++|+++|++......| .+-..+. .++.++|...=
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 3555666678889999999999998877655555666778999999999997543211 1111221 67788888888
Q ss_pred HHHHHHcC
Q 048703 338 SQVLKCLG 345 (361)
Q Consensus 338 ~~IL~~L~ 345 (361)
..|+....
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877543
No 28
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=68.34 E-value=1 Score=43.52 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHh
Q 048703 256 LVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFI 323 (361)
Q Consensus 256 lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i 323 (361)
..+||..++..++|+.++...|..|+.+......+...+..-|+++|||||+.+... ..+.+++..+
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v 301 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQT 301 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 347888999999999999999999999988765556667788999999999998653 2344444433
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=67.60 E-value=4.7 Score=36.81 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCch-HHHHHHHHHHHHhhhcCc-cCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHH
Q 048703 257 VDWLVEVSEEYKLVP-DTLYMTVYLIDWFLCQNY-IERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVL 334 (361)
Q Consensus 257 IdwL~~v~~~~~L~~-eTl~lAV~l~DRfLs~~~-v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~ 334 (361)
.+||......++++. .+..+|-.+++.-+.... +-....-.||++|+++|++.-.. .+....+..++ +|+.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~--g~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKT--GYTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHh--CcCHHHHH
Confidence 467778888888765 677788888776553333 44555667899999999997654 33445565555 57888888
Q ss_pred HHHHHHHHHc
Q 048703 335 KMESQVLKCL 344 (361)
Q Consensus 335 ~mE~~IL~~L 344 (361)
..=..|+..+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777666654
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=66.69 E-value=5.9 Score=36.11 Aligned_cols=86 Identities=9% Similarity=-0.071 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccC-----CCCHHHHHHhhcCC
Q 048703 257 VDWLVEVSEEYKLVPDT----LYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEIC-----APRAEEFCFITDNT 327 (361)
Q Consensus 257 IdwL~~v~~~~~L~~eT----l~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~-----~p~l~~l~~i~~~~ 327 (361)
.+||......++++.++ ..+|-++++.-+....+-....-.||++|+++|.+..... ......+..++ .
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 45666666677776655 3456677776655444555667789999999999987642 12334455554 5
Q ss_pred CCHHHHHHHHHHHHHHc
Q 048703 328 YSREEVLKMESQVLKCL 344 (361)
Q Consensus 328 yt~~eI~~mE~~IL~~L 344 (361)
|+.++|...=..|+..+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78899888777776654
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=65.58 E-value=2.4 Score=39.11 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHH
Q 048703 258 DWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKME 337 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE 337 (361)
+||...+...+++.++..+|-.+++.-+....+-....-.||++|+++|.+.-... +...++..++ +|+.++|...=
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~t--g~~~~~l~~~~ 216 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYL--SYTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHS--CCCSSTTTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH--CCCHHHHHHHH
Confidence 57777778888888888899999988776555556667789999999999986542 2333444444 34555554443
Q ss_pred HHHH
Q 048703 338 SQVL 341 (361)
Q Consensus 338 ~~IL 341 (361)
..|+
T Consensus 217 ~~l~ 220 (269)
T 2b9r_A 217 QHLA 220 (269)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3443
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=65.36 E-value=6.6 Score=35.67 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCchHHH----HHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCC----HHHHHHhhcCCCC
Q 048703 258 DWLVEVSEEYKLVPDTL----YMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPR----AEEFCFITDNTYS 329 (361)
Q Consensus 258 dwL~~v~~~~~L~~eTl----~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~----l~~l~~i~~~~yt 329 (361)
+||......++++.+++ .+|.++++.-+....+-....-.||++|+++|.+.....+.. ...+..++ +|+
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t--g~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL--NFS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH--CcC
Confidence 34445555666666543 356677775554444555667789999999999985222222 45565555 578
Q ss_pred HHHHHHHHHHHHHHc
Q 048703 330 REEVLKMESQVLKCL 344 (361)
Q Consensus 330 ~~eI~~mE~~IL~~L 344 (361)
.++|...=..|...+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899888777776654
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=54.87 E-value=22 Score=32.17 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhc---CccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHH
Q 048703 255 ILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQ---NYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSRE 331 (361)
Q Consensus 255 ~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~---~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~ 331 (361)
.+.+-|+.++.+-+++..++--||.|--.|.-. ....-.+-+=|+++||+||+--- ..|..+.++..+ |.....-
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~-~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEA-QQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHc-CCCccHHHHHHH-hhhhhHH
Confidence 345566889999999999999999999999864 34556677889999999999433 356677776543 4455544
Q ss_pred HHHHHH
Q 048703 332 EVLKME 337 (361)
Q Consensus 332 eI~~mE 337 (361)
++.+.|
T Consensus 92 elrr~E 97 (260)
T 3h4c_A 92 ELRRAD 97 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=53.20 E-value=13 Score=34.85 Aligned_cols=86 Identities=12% Similarity=0.024 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCchH----HHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCH----HHHHHhhcCCCCH
Q 048703 259 WLVEVSEEYKLVPD----TLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRA----EEFCFITDNTYSR 330 (361)
Q Consensus 259 wL~~v~~~~~L~~e----Tl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l----~~l~~i~~~~yt~ 330 (361)
||..+...+++..+ ....|-++++.-+....+-....-.||++|+++|.+.-+..++.. ..|..++ .|+.
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~ 251 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEV 251 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCH
Confidence 44444445555433 223455666655544444555667889999999999876544432 3333443 5788
Q ss_pred HHHHHHHHHHHHHcCc
Q 048703 331 EEVLKMESQVLKCLGF 346 (361)
Q Consensus 331 ~eI~~mE~~IL~~L~w 346 (361)
++|...=..|+..+.=
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888888776653
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=50.94 E-value=11 Score=35.86 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCC-HHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 048703 270 VPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPR-AEEFCFITDNTYSREEVLKMESQVLKCLG 345 (361)
Q Consensus 270 ~~eTl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~-l~~l~~i~~~~yt~~eI~~mE~~IL~~L~ 345 (361)
+.....+|..+++.-+.....-......||++|+++|++......+. ...+.......++.++|...=..|+..+.
T Consensus 184 ~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 184 PEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 34566778788776554333334556778999999999987765443 22333333456777777777666666543
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=47.72 E-value=14 Score=33.70 Aligned_cols=90 Identities=6% Similarity=-0.029 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCchHHH----HHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhcc---C----CC-CHHHHHHhh
Q 048703 257 VDWLVEVSEEYKLVPDTL----YMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEI---C----AP-RAEEFCFIT 324 (361)
Q Consensus 257 IdwL~~v~~~~~L~~eTl----~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~---~----~p-~l~~l~~i~ 324 (361)
.+||..+...++++.++. ..|..+++..+....+-....-.||++|+++|...-+. . .. ....+..++
T Consensus 158 ~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~ 237 (271)
T 2w96_A 158 HDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237 (271)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHH
Confidence 356667777777776653 24556666443322233445667899999999986542 1 11 123454554
Q ss_pred cCCCCHHHHHHHHHHHHHHcCcee
Q 048703 325 DNTYSREEVLKMESQVLKCLGFQL 348 (361)
Q Consensus 325 ~~~yt~~eI~~mE~~IL~~L~w~L 348 (361)
.|+..+|...=..|+..++=.+
T Consensus 238 --~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 238 --KCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp --TSCHHHHHHHHHHHHHHHTTTT
T ss_pred --CcCHHHHHHHHHHHHHHHHHHH
Confidence 5788999988888888766433
No 37
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=27.42 E-value=34 Score=20.08 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=13.1
Q ss_pred CCccccccccccccCCCccCCCccc
Q 048703 53 PKKAASDENNIIVTDNPCRQHKRRA 77 (361)
Q Consensus 53 ~Kr~a~d~~~~~~~~~~~~~~krRa 77 (361)
+.|--||||.. ++.+|||-
T Consensus 4 srrrhsdendg------gq~hkrr~ 22 (26)
T 3ul0_C 4 SRRRHSDENDG------GQPHKRRK 22 (26)
T ss_dssp CCCCCTTSCSS------CCCSCCCC
T ss_pred cccccccccCC------CCcccccc
Confidence 45677888876 45677774
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=22.42 E-value=95 Score=28.44 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048703 273 TLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLK 342 (361)
Q Consensus 273 Tl~lAV~l~DRfLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~ 342 (361)
++..+..++|.-+....+-....-.||++|+++|+. .+.+..++ +|+.++|...-..|+.
T Consensus 179 ~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~t--g~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 179 IFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVS--GYQWCDIENCVKWMVP 238 (283)
T ss_dssp HHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHS--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 444455666655543344455556789999999974 33444443 5788888776655543
Done!