Your job contains 1 sequence.
>048704
MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV
FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG
ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID
LKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICFH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048704
(220 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 816 2.5e-81 1
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 589 5.4e-57 1
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 587 9.1e-57 1
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 587 9.3e-57 1
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 576 1.6e-55 1
UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta... 572 1.8e-55 1
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 575 2.1e-55 1
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 573 3.6e-55 1
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 572 4.6e-55 1
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 572 4.6e-55 1
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 543 8.4e-52 1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 526 6.5e-50 1
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ... 430 2.1e-39 1
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo... 416 2.7e-38 1
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II... 416 2.7e-38 1
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci... 372 2.8e-34 1
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci... 375 2.0e-33 1
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph... 372 4.2e-33 1
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci... 368 1.1e-32 1
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a... 363 3.9e-32 1
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci... 362 5.1e-32 1
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I... 360 5.3e-32 1
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha... 360 7.2e-32 1
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ... 356 3.2e-31 1
UNIPROTKB|F2Z2A5 - symbol:TOP3B "DNA topoisomerase 3-beta... 337 1.4e-30 1
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA... 336 3.0e-29 1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer... 329 5.5e-29 1
UNIPROTKB|C9JT00 - symbol:TOP3B "DNA topoisomerase 3-beta... 302 7.3e-27 1
UNIPROTKB|C9JKE2 - symbol:TOP3B "DNA topoisomerase 3-beta... 296 3.2e-26 1
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd... 303 6.0e-26 1
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III... 290 9.4e-25 1
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ... 285 3.4e-24 1
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec... 276 3.5e-23 1
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci... 262 2.1e-21 1
UNIPROTKB|C9J9X4 - symbol:TOP3B "DNA topoisomerase 3-beta... 134 5.3e-09 1
UNIPROTKB|C9JEQ1 - symbol:TOP3B "DNA topoisomerase 3-beta... 130 1.6e-08 1
UNIPROTKB|D4A4A6 - symbol:D4A4A6 "Uncharacterized protein... 83 2.9e-07 2
UNIPROTKB|J3QR18 - symbol:TOP3A "DNA topoisomerase 3-alph... 111 2.6e-06 1
UNIPROTKB|C9JHR0 - symbol:TOP3B "DNA topoisomerase 3-beta... 102 2.8e-05 1
TIGR_CMR|BA_0375 - symbol:BA_0375 "DNA topoisomerase III"... 116 0.00040 1
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 155/205 (75%), Positives = 177/205 (86%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L+VLMVAEKPSIALSIA+VLS G++ TR+ STEVHEFDGMF G A+ +VTSV+GHVF +
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSV 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQ+W +P DLF AP+ K ESNPK HICRHL+ EARGC ++VLWLDCDREGENI
Sbjct: 65 DFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENI 124
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDLKV
Sbjct: 125 CFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKV 184
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAF+RFQT+YFQGKY NLD R IS
Sbjct: 185 GVAFSRFQTSYFQGKYQNLDCRVIS 209
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 589 (212.4 bits), Expect = 5.4e-57, P = 5.4e-57
Identities = 118/210 (56%), Positives = 150/210 (71%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G TRK + VHE+ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGSCSTRKGLNGACSVHEYMGSFTGQNVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L EA+GC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R V+RA+FSS+T+ DI AM L EPN+NEAL+VDARQE
Sbjct: 124 NICFEVLDAIQPVMNKPYGNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLIS 213
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 587 (211.7 bits), Expect = 9.1e-57, P = 9.1e-57
Identities = 117/210 (55%), Positives = 149/210 (70%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK VHE+ G F+G A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + R ++RA+FSS+T+ DI AM +L EPN NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLIS 213
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 587 (211.7 bits), Expect = 9.3e-57, P = 9.3e-57
Identities = 117/210 (55%), Positives = 149/210 (70%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK VHE+ G F+G A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + R ++RA+FSS+T+ DI AM +L EPN NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLIS 213
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 576 (207.8 bits), Expect = 1.6e-55, P = 1.6e-55
Identities = 115/210 (54%), Positives = 148/210 (70%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGNMSSHKGLNGTCSVHEYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM +L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQAHGSEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLIS 213
>UNIPROTKB|C9JEI7 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
Bgee:C9JEI7 Uniprot:C9JEI7
Length = 246
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 117/210 (55%), Positives = 146/210 (69%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLIS 213
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 575 (207.5 bits), Expect = 2.1e-55, P = 2.1e-55
Identities = 115/210 (54%), Positives = 148/210 (70%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDTDICNAMTRLTEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLIS 213
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 573 (206.8 bits), Expect = 3.6e-55, P = 3.6e-55
Identities = 115/210 (54%), Positives = 148/210 (70%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLIS 213
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 572 (206.4 bits), Expect = 4.6e-55, P = 4.6e-55
Identities = 115/210 (54%), Positives = 145/210 (69%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPTHSGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLIS 213
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 572 (206.4 bits), Expect = 4.6e-55, P = 4.6e-55
Identities = 117/210 (55%), Positives = 146/210 (69%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLIS 213
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 543 (196.2 bits), Expect = 8.4e-52, P = 8.4e-52
Identities = 114/215 (53%), Positives = 144/215 (66%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKP +A SIA +LS G+ RK V E+DG F G A KVTS
Sbjct: 1 MAPT-VLMVAEKPLLADSIANLLSNGQAKKRKGWNGVCSVSEYDGQFNGRAARFKVTSTC 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GHV LDFPP + +W +P +L+ AP + E+NPK+ + L EA+ LVLWLDCD
Sbjct: 60 GHVMSLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCD 119
Query: 118 REGENICFEVIE---CTGFQVN-DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+EGENICFEVI+ C F+ D V+RA FS++TEKDI AM NL P++N + +V
Sbjct: 120 KEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSV 179
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DARQE+DL++G +FTRFQT +FQGKYG+LDS IS
Sbjct: 180 DARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVIS 214
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 526 (190.2 bits), Expect = 6.5e-50, P = 6.5e-50
Identities = 105/209 (50%), Positives = 142/209 (67%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF K E+NPK ++ + L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +N+ + + +RA FS++TEKDI KAM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>TAIR|locus:2160841 [details] [associations]
symbol:TOP3A "topoisomerase 3alpha" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
Uniprot:Q9LVP1
Length = 926
Score = 430 (156.4 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 94/206 (45%), Positives = 133/206 (64%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
P+ VL VAEKPS+A S+A +LS G TR+ + ++ EFD G + +TSV+GH
Sbjct: 8 PVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGH 67
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L+F Y+ W++ +P DL+QAPV K K I + L +EAR LVLWLDCDRE
Sbjct: 68 LMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDRE 127
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FEV++ C + N + RA FS++ ++DI +A+ NL +PN+ A AVDARQE
Sbjct: 128 GENIAFEVVDVCRAVKHN---LFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQE 184
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDS 204
IDL++G +FTRFQT + ++ +DS
Sbjct: 185 IDLRIGASFTRFQTMLLRDRFA-IDS 209
>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III,
putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 416 (151.5 bits), Expect = 2.7e-38, P = 2.7e-38
Identities = 90/195 (46%), Positives = 126/195 (64%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
MA LKVL VAEKPS+A SIA +LS G+ K+ ++ V FD Y+ VTSV
Sbjct: 1 MARLKVLNVAEKPSVASSIAEILSKGRPNKIKSCSKYNPVFTFDYKIKNDIWYMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W+ ++P +LF A + K +I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI ++ + + +HRA+FS+VTEKDI+ A+ NL EPN+N A +VD R+
Sbjct: 121 REGEHICFEVINAC--RITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRR 178
Query: 178 EIDLKVGVAFTRFQT 192
EIDL++G FTRF T
Sbjct: 179 EIDLRMGSIFTRFMT 193
>UNIPROTKB|Q8IDM7 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 416 (151.5 bits), Expect = 2.7e-38, P = 2.7e-38
Identities = 90/195 (46%), Positives = 126/195 (64%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
MA LKVL VAEKPS+A SIA +LS G+ K+ ++ V FD Y+ VTSV
Sbjct: 1 MARLKVLNVAEKPSVASSIAEILSKGRPNKIKSCSKYNPVFTFDYKIKNDIWYMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W+ ++P +LF A + K +I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI ++ + + +HRA+FS+VTEKDI+ A+ NL EPN+N A +VD R+
Sbjct: 121 REGEHICFEVINAC--RITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRR 178
Query: 178 EIDLKVGVAFTRFQT 192
EIDL++G FTRF T
Sbjct: 179 EIDLRMGSIFTRFMT 193
>UNIPROTKB|H7BZN5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
Ensembl:ENST00000412083 Uniprot:H7BZN5
Length = 384
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 85/196 (43%), Positives = 116/196 (59%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 10 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 69
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 70 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 129
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 130 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 186
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 187 LRIGAAFTRFQTLRLQ 202
>UNIPROTKB|F1MGY1 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
[GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
Length = 1002
Score = 375 (137.1 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 85/196 (43%), Positives = 119/196 (60%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LSGG++ R+ + +++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +EA+ C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPS---LQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>UNIPROTKB|Q13472 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
Uniprot:Q13472
Length = 1001
Score = 372 (136.0 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 85/196 (43%), Positives = 116/196 (59%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>UNIPROTKB|E2RIS5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
Length = 989
Score = 368 (134.6 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 83/196 (42%), Positives = 117/196 (59%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPN---LQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>MGI|MGI:1197527 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
Length = 1003
Score = 363 (132.8 bits), Expect = 3.9e-32, P = 3.9e-32
Identities = 82/196 (41%), Positives = 115/196 (58%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>UNIPROTKB|F1P1F3 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
Length = 1020
Score = 362 (132.5 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 81/196 (41%), Positives = 116/196 (59%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E+D G + + +TSV GH+
Sbjct: 37 KVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K V I R L +E + C LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + +A NL +P++ + AV+ RQE+D
Sbjct: 157 NIGFEIIHVCKAVKPN---LQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELD 213
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 214 LRIGAAFTRFQTLRLQ 229
>DICTYBASE|DDB_G0275257 [details] [associations]
symbol:top3 "DNA topoisomerase III" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
Length = 828
Score = 360 (131.8 bits), Expect = 5.3e-32, P = 5.3e-32
Identities = 77/198 (38%), Positives = 119/198 (60%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH---EFDGMFLG-SHAYIKVTSVVGHV 60
++L VAEKPS A IA +LS + R+ ++ + +F L + + TSV GH+
Sbjct: 4 RILNVAEKPSAAKEIAAILSNKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+D ++ W + +P+ LF AP+ K + K + + L +E + L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 121 ENICFEVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ENI FEV+E +A++K +RA FS++ ++I +A NL +PN +++AVD R E
Sbjct: 124 ENIAFEVLEVC----KNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRME 179
Query: 179 IDLKVGVAFTRFQTTYFQ 196
IDL++G AFTRFQT Y +
Sbjct: 180 IDLRIGAAFTRFQTLYLK 197
>RGD|1309320 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 IPI:IPI00951502
Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
Uniprot:D4A6J4
Length = 949
Score = 360 (131.8 bits), Expect = 7.2e-32, P = 7.2e-32
Identities = 81/196 (41%), Positives = 117/196 (59%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF+A + K + I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWSSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A +L EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>FB|FBgn0040268 [details] [associations]
symbol:Top3alpha "Topoisomerase 3alpha" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
Uniprot:Q9NG98
Length = 1250
Score = 356 (130.4 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 79/197 (40%), Positives = 117/197 (59%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V +F+ G +A + +TSV GH+
Sbjct: 26 MKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHM 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K + I R L +E RGC L++W DCDREG
Sbjct: 86 MQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 146 ENIGYEIIDVCRAIKPNIS---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 202
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 203 DLRTGAAITRFQTMRLQ 219
>UNIPROTKB|F2Z2A5 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993 IPI:IPI00878002
Ensembl:ENST00000444502 Ensembl:ENST00000457179 Uniprot:F2Z2A5
Length = 129
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFE 126
NICFE
Sbjct: 124 NICFE 128
>ZFIN|ZDB-GENE-071212-2 [details] [associations]
symbol:top3a "topoisomerase (DNA) III alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
Uniprot:F1R242
Length = 1009
Score = 336 (123.3 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 82/209 (39%), Positives = 122/209 (58%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA ++S G+ R+ + +++E++ G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIAEIMSNGRSRRREGCSVYNKIYEYEYNLFGQNVTVNMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F ++ ++ +P+ LF A V K + I R L +E R C L++W DCDREGE
Sbjct: 95 ALEFK-VHR--HSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDREGE 151
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I+ C + N +V RARFS +T I +A L EP+ N + AVD RQE+D
Sbjct: 152 NIGFEIIDVCKAVKPNI---QVFRARFSEITPNSIRRACETLTEPDINVSDAVDVRQELD 208
Query: 181 LKVGVAFTRFQTTYFQGKYG-NLDSRFIS 208
L++G +FTRFQT Q + +L + IS
Sbjct: 209 LRIGASFTRFQTLRLQKIFPESLSDQLIS 237
>ASPGD|ASPL0000072189 [details] [associations]
symbol:AN4555 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
KEGG:ani:AN4555.2 Uniprot:Q5B4H5
Length = 629
Score = 329 (120.9 bits), Expect = 5.5e-29, P = 5.5e-29
Identities = 80/214 (37%), Positives = 123/214 (57%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLGS--HAYIKVT 54
MA KVL VAEKP+IA ++A LSGG++ T+ + + + FD F ++ + +T
Sbjct: 1 MAGTKVLCVAEKPAIAKAVAQHLSGGRMETKNVTGNRFVKNYVFDFNFGNQWGNSSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ L+F Y W + P LF+APV A + K I ++ ++A +LV+W
Sbjct: 61 SVLGHLTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYLVIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I EV + + + R V RA+F++ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEVRDQA--KAGNGRIVVKRAKFNNTEKIHVLNAARSLIELDERQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR T Q + L + IS
Sbjct: 179 ARIELDLRIGAAFTRLLTLQLQNLHATLTQKVIS 212
>UNIPROTKB|C9JT00 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000169036 IPI:IPI00877734 ProteinModelPortal:C9JT00
STRING:C9JT00 Ensembl:ENST00000437929 ArrayExpress:C9JT00
Bgee:C9JT00 Uniprot:C9JT00
Length = 122
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 61/119 (51%), Positives = 78/119 (65%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EG
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
>UNIPROTKB|C9JKE2 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00879445 ProteinModelPortal:C9JKE2 STRING:C9JKE2
Ensembl:ENST00000430142 HOGENOM:HOG000169036 ArrayExpress:C9JKE2
Bgee:C9JKE2 Uniprot:C9JKE2
Length = 121
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 60/118 (50%), Positives = 77/118 (65%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+E
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
>WB|WBGene00006596 [details] [associations]
symbol:top-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
OMA:IGLMDAN NextBio:893376 Uniprot:O61660
Length = 759
Score = 303 (111.7 bits), Expect = 6.0e-26, P = 6.0e-26
Identities = 67/202 (33%), Positives = 112/202 (55%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+ L VAEK +A +A +LS G R+ ++ ++ + G I VTSV GH+
Sbjct: 3 RALFVAEKNDVAKGVAAILSNGTANRREGRSKFNKIYTLNTELFGQQTAISVTSVSGHMM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH-LNQEARGCGHLVLWLDCDREG 120
F +W ++ ++LF+APV + P++ + L ++A+ LV+W DCDREG
Sbjct: 63 NFQFHENMSNWQTASMVELFRAPVRHVVT-PEMKLIEQTLREQAQRHDILVVWTDCDREG 121
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E I E+++ + ++ R + RARFS +T+ I +A NL+ + AVD R E+D
Sbjct: 122 EAIGAEIVKVC--RDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELD 179
Query: 181 LKVGVAFTRFQTTYFQGKYGNL 202
L++G AFTR QT + + ++ +L
Sbjct: 180 LRIGSAFTRLQTLHLRNRFRDL 201
>POMBASE|SPBC16G5.12c [details] [associations]
symbol:top3 "DNA topoisomerase III" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000280 "nuclear division"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
"DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
"RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
"maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
Length = 622
Score = 290 (107.1 bits), Expect = 9.4e-25, P = 9.4e-25
Identities = 74/211 (35%), Positives = 116/211 (54%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF-LGSH---AYIKVTSVVG 58
++VL VAEK SIA S+A++L GG + R ++ V +D F G + + + +TSV G
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGHVRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVSG 60
Query: 59 HVFRLDFPPAYQDWNASNPLD-LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
H+ FP Y W+ S P D LF A + + S + ++ +EAR +L +W DCD
Sbjct: 61 HLTEASFPSEYSSWS-SVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+ + ++ +V RA F+++ I+ A + ++N A AVDAR
Sbjct: 120 REGEHIGVEISNVA--RASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+D ++G FTR QT Q + L ++ IS
Sbjct: 178 ELDFRLGAIFTRLQTIQLQKSFDILQNKIIS 208
>CGD|CAL0003329 [details] [associations]
symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
Length = 629
Score = 285 (105.4 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 69/201 (34%), Positives = 106/201 (52%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF-LGSH---AYIKVTSVVG 58
+++L VAEKPSI+ +A +L GG+ R + + + +D F S + +TSV G
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRKKVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVAG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF A+ W P LF+A + + ++ ++ +EAR L++W DCDR
Sbjct: 61 HITGLDFGSAFS-WGNCVPGRLFEADIKTIITKKSIY--ENIAEEARNADKLMIWTDCDR 117
Query: 119 EGENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I FE++ + N + RARFS + I++A N V + + AV R
Sbjct: 118 EGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCRM 177
Query: 178 EIDLKVGVAFTRFQTTYFQGK 198
EIDL+VG +FTR T + K
Sbjct: 178 EIDLRVGTSFTRLLTDQLRQK 198
>SGD|S000004224 [details] [associations]
symbol:TOP3 "DNA Topoisomerase III" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
"RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0000018 "regulation of DNA recombination" evidence=IMP]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
Length = 656
Score = 276 (102.2 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 74/210 (35%), Positives = 113/210 (53%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D MF G ++ + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFMFSGFPFARNGANCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EAR +L++W D
Sbjct: 61 VAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWTD 120
Query: 116 CDREGENICFEVIECT--GFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
CDREGE I +E+ + G ++ ND +V+RA FS + + IL A N +
Sbjct: 121 CDREGEYIGWEIWQEAKRGNRLIQND---QVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
AV R EIDL+ GV FTR T + K N
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRN 207
>UNIPROTKB|B4DK80 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
UCSC:uc010vxs.1 Uniprot:B4DK80
Length = 906
Score = 262 (97.3 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 59/122 (48%), Positives = 75/122 (61%)
Query: 76 NPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQ 134
NPL LF+A + K V I + L +E R C LV+W DCDREGENI FE+I C +
Sbjct: 14 NPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKAVK 73
Query: 135 VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTY 194
N +V RARFS +T + A NL EP++ + AVD RQE+DL++G AFTRFQT
Sbjct: 74 PN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 195 FQ 196
Q
Sbjct: 131 LQ 132
>UNIPROTKB|C9J9X4 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00879706 ProteinModelPortal:C9J9X4
SMR:C9J9X4 STRING:C9J9X4 Ensembl:ENST00000456075
ArrayExpress:C9J9X4 Bgee:C9J9X4 Uniprot:C9J9X4
Length = 61
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 31/58 (53%), Positives = 37/58 (63%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
>UNIPROTKB|C9JEQ1 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00880050 ProteinModelPortal:C9JEQ1
SMR:C9JEQ1 STRING:C9JEQ1 Ensembl:ENST00000449704
ArrayExpress:C9JEQ1 Bgee:C9JEQ1 Uniprot:C9JEQ1
Length = 60
Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGH 59
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GH
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
>UNIPROTKB|D4A4A6 [details] [associations]
symbol:D4A4A6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
GO:GO:0005694 GO:GO:0006265 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 IPI:IPI00778588
ProteinModelPortal:D4A4A6 Ensembl:ENSRNOT00000057981
ArrayExpress:D4A4A6 Uniprot:D4A4A6
Length = 85
Score = 83 (34.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHK 87
+TSV GH+ DF ++ W++ NPL LF+A + K
Sbjct: 41 MTSVSGHLLAHDFQMQFRKWSSCNPLVLFEAEIEK 75
Score = 55 (24.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKL 28
KVL VAEK A IA +LS G++
Sbjct: 10 KVLCVAEKNDAAKGIADLLSNGRM 33
>UNIPROTKB|J3QR18 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 HGNC:HGNC:11992
ProteinModelPortal:J3QR18 Ensembl:ENST00000461127 Uniprot:J3QR18
Length = 139
Score = 111 (44.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWN 73
DF ++ W+
Sbjct: 95 AHDFQMQFRKWS 106
>UNIPROTKB|C9JHR0 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
PANTHER:PTHR11390 EMBL:D87012 HGNC:HGNC:11993 IPI:IPI00877908
ProteinModelPortal:C9JHR0 SMR:C9JHR0 STRING:C9JHR0
Ensembl:ENST00000442653 ArrayExpress:C9JHR0 Bgee:C9JHR0
Uniprot:C9JHR0
Length = 47
Score = 102 (41.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLG 46
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAG 47
>TIGR_CMR|BA_0375 [details] [associations]
symbol:BA_0375 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 RefSeq:NP_842919.1
RefSeq:YP_016995.1 RefSeq:YP_026641.1 HSSP:P14294
ProteinModelPortal:Q81Z97 IntAct:Q81Z97 DNASU:1084121
EnsemblBacteria:EBBACT00000010088 EnsemblBacteria:EBBACT00000017365
EnsemblBacteria:EBBACT00000020979 GeneID:1084121 GeneID:2819802
GeneID:2849354 KEGG:ban:BA_0375 KEGG:bar:GBAA_0375 KEGG:bat:BAS0361
HOGENOM:HOG000086847 KO:K03169 OMA:LSNRRCP ProtClustDB:PRK07726
BioCyc:BANT260799:GJAJ-403-MONOMER
BioCyc:BANT261594:GJ7F-413-MONOMER TIGRFAMs:TIGR01056
Uniprot:Q81Z97
Length = 729
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 59/218 (27%), Positives = 99/218 (45%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P +Y + WN + P+ + + V K + L + + +++ D
Sbjct: 50 DPESYDVKYKKWNLEDLPMLPERLKLTVIKQTGKQFNAVKSQLLR--KDVNEIIVATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVD 174
REGE + +I+ ++N + + R SSVT+K I NL +P + N +
Sbjct: 108 REGELVARWIIDKV--RIN---KPIKRLWISSVTDKAIKDGFANL-KPGKAYDNLYASAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
AR E D +G+ TR TT F + G + + ++++
Sbjct: 162 ARSEADWYIGLNATRALTTRFNAQLNCGRVQTPTVAMI 199
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 220 220 0.00094 112 3 11 22 0.46 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 603 (64 KB)
Total size of DFA: 185 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.41u 0.24s 19.65t Elapsed: 00:00:01
Total cpu time: 19.41u 0.24s 19.65t Elapsed: 00:00:01
Start: Sat May 11 15:46:28 2013 End: Sat May 11 15:46:29 2013