BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048704
(220 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 865
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/208 (79%), Positives = 188/208 (90%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP VLMVAEKPSIALSIA+ LS G++ ++K TEVHEFDGMFLG A+ KVTSV+GH+
Sbjct: 1 MAPPVVLMVAEKPSIALSIASALSHGQMSSKKGGTEVHEFDGMFLGFQAHYKVTSVIGHI 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +DFP YQDW A++P+DLFQAP+ KAESNPKVHI RHL+QEARGCGHLVLWLDCDREG
Sbjct: 61 FSVDFPQKYQDWTANDPMDLFQAPIVKAESNPKVHIRRHLSQEARGCGHLVLWLDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEVIECTGF +ND+RR+V+RARFSSV EKDILKAM NLV+PNR+EALAVDARQEID
Sbjct: 121 ENICFEVIECTGFHLNDSRRRVYRARFSSVAEKDILKAMDNLVQPNRDEALAVDARQEID 180
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQT++FQGKYGNLDSR IS
Sbjct: 181 LKVGVAFTRFQTSFFQGKYGNLDSRVIS 208
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 867
Score = 342 bits (877), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 164/208 (78%), Positives = 180/208 (86%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
M VLMVAEKPSIALSIA+ LS G++ TRK STEVHEFDG FLG HAY KVTSV+GHV
Sbjct: 1 MVAPTVLMVAEKPSIALSIASALSHGQMSTRKGSTEVHEFDGRFLGHHAYYKVTSVIGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +DF +QDW +++PLDLFQA V K ESNPK HIC+HL++EARGC LVLWLDCDREG
Sbjct: 61 FSIDFQAGFQDWKSTDPLDLFQASVIKTESNPKAHICQHLSREARGCDCLVLWLDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEVIECTGF N R+KV+RARFSSVTEKDILKA+ NLVEPNRNEALAVDARQEID
Sbjct: 121 ENICFEVIECTGFGGNGTRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEID 180
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQTT+FQGKYGNLDSR IS
Sbjct: 181 LKVGVAFTRFQTTFFQGKYGNLDSRLIS 208
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
Length = 894
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 180/205 (87%), Gaps = 2/205 (0%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRK--ASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+L VAEKPSIALSIA+ LSGG + TR+ +STEVHEF+G F GS+A KVTSV+GHVF +
Sbjct: 32 ILQVAEKPSIALSIASALSGGHMSTRRGGSSTEVHEFNGTFRGSNAQYKVTSVIGHVFSV 91
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQDW ++PLDLFQAP+ KAESNPK HI RHL+QEAR CGHLVLWLDCDREGENI
Sbjct: 92 DFPAKYQDWTVTDPLDLFQAPILKAESNPKAHIRRHLSQEARDCGHLVLWLDCDREGENI 151
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV+ECTGF N+ARR+V+RARFSSVTEKDILKAM NLVEPN +EA AVDARQEIDLKV
Sbjct: 152 CFEVVECTGFHGNEARRRVYRARFSSVTEKDILKAMDNLVEPNEDEARAVDARQEIDLKV 211
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAFTRFQT+YFQGKYGNLDSR IS
Sbjct: 212 GVAFTRFQTSYFQGKYGNLDSRVIS 236
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 180/205 (87%), Gaps = 2/205 (0%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRK--ASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+L VAEKPSIALSIA+ LSGG + TR+ +STEVHEF+G F GS+A KVTSV+GHVF +
Sbjct: 48 ILQVAEKPSIALSIASALSGGHMSTRRGGSSTEVHEFNGTFRGSNAQYKVTSVIGHVFSV 107
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQDW ++PLDLFQAP+ KAESNPK HI RHL+QEAR CGHLVLWLDCDREGENI
Sbjct: 108 DFPAKYQDWTVTDPLDLFQAPILKAESNPKAHIRRHLSQEARDCGHLVLWLDCDREGENI 167
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV+ECTGF N+ARR+V+RARFSSVTEKDILKAM NLVEPN +EA AVDARQEIDLKV
Sbjct: 168 CFEVVECTGFHGNEARRRVYRARFSSVTEKDILKAMDNLVEPNEDEARAVDARQEIDLKV 227
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAFTRFQT+YFQGKYGNLDSR IS
Sbjct: 228 GVAFTRFQTSYFQGKYGNLDSRVIS 252
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 864
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/200 (79%), Positives = 176/200 (88%)
Query: 9 VAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPA 68
VAEKPSIALSIA+ LS G++ TRK STEVHEFDG FLG HAY KVTSV+GHVF +DF
Sbjct: 6 VAEKPSIALSIASALSHGQMSTRKGSTEVHEFDGRFLGHHAYYKVTSVIGHVFSIDFQAG 65
Query: 69 YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVI 128
+QDW +++PLDLFQA V K ESNPK HIC+HL++EARGC LVLWLDCDREGENICFEVI
Sbjct: 66 FQDWKSTDPLDLFQASVIKTESNPKAHICQHLSREARGCDCLVLWLDCDREGENICFEVI 125
Query: 129 ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFT 188
EC+GF N R+KV+RARFSSVTEKDILKA+ NLVEPNRNEALAVDARQEIDLKVGVAFT
Sbjct: 126 ECSGFGGNGTRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEIDLKVGVAFT 185
Query: 189 RFQTTYFQGKYGNLDSRFIS 208
RFQTT+FQGKYGNLDSR IS
Sbjct: 186 RFQTTFFQGKYGNLDSRLIS 205
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/210 (76%), Positives = 182/210 (86%), Gaps = 6/210 (2%)
Query: 1 MAPL--KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVG 58
MAP KVLMVAEKPSIALSIA+VLS +++TR+ STEVHEFDG FLGS A+ +VTSV+G
Sbjct: 1 MAPPIPKVLMVAEKPSIALSIASVLSHAQMFTRRGSTEVHEFDGKFLGSPAHFRVTSVIG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
HVF +DFP YQDW A++PLDLFQA V K ESNPK HICRHL+QEARGC +LVLWLDCDR
Sbjct: 61 HVFSVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICRHLSQEARGCRYLVLWLDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGENICFEVI+ TGF +ND +RARFSSVTEKD++KA+ NLV PNR+EALAVDARQE
Sbjct: 121 EGENICFEVIKSTGFHIND----TYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQE 176
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
IDLKVGVAFTRFQT+YFQGKYGNLDSR IS
Sbjct: 177 IDLKVGVAFTRFQTSYFQGKYGNLDSRVIS 206
>gi|242045216|ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 158/208 (75%), Positives = 180/208 (86%), Gaps = 3/208 (1%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP KVLMVAEKPSIALSIA+ LSGG++ TRK ST+VHEFDG F GS+A KVTSV+GHV
Sbjct: 1 MAP-KVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGTFQGSYANFKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFPPAYQ+W A++PLDLF+APV ++E NPK HI RHL QEARGC +L+LWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEATDPLDLFEAPVLRSECNPKAHIRRHLAQEARGCTYLILWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENIC+EVIECTG + D R++ RARFSSVTEKDIL AM NLV PN++EAL+VDARQEID
Sbjct: 120 ENICYEVIECTG--IPDNGRRIFRARFSSVTEKDILTAMDNLVLPNKDEALSVDARQEID 177
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQT YFQGKYGNLDSR IS
Sbjct: 178 LKVGVAFTRFQTRYFQGKYGNLDSRVIS 205
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 865
Score = 328 bits (842), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/205 (75%), Positives = 177/205 (86%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L+VLMVAEKPSIALSIA+VLS G++ TR+ STEVHEFDGMF G A+ +VTSV+GHVF +
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSV 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQ+W +P DLF AP+ K ESNPK HICRHL+ EARGC ++VLWLDCDREGENI
Sbjct: 65 DFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENI 124
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDLKV
Sbjct: 125 CFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKV 184
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAF+RFQT+YFQGKY NLD R IS
Sbjct: 185 GVAFSRFQTSYFQGKYQNLDCRVIS 209
>gi|218202402|gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 179/208 (86%), Gaps = 1/208 (0%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP VLMVAEKPSIALSIA+ LSGG++ TRK ST+VHEFDGMF GSHA+ KVTSV+GHV
Sbjct: 1 MAP-TVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFPPAYQ+W ++P+DLF APV ++E NPK HI RHL QEARGC +LVLWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENIC+EVI+CTG ++ R++ RA+FSSVTEKDI+ AM NLV P+++EALAVDARQEID
Sbjct: 120 ENICYEVIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEID 179
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQT YFQGKYGNLDSR IS
Sbjct: 180 LKVGVAFTRFQTRYFQGKYGNLDSRVIS 207
>gi|115479969|ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|215695029|dbj|BAG90220.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 866
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 179/208 (86%), Gaps = 1/208 (0%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP VLMVAEKPSIALSIA+ LSGG++ TRK ST+VHEFDGMF GSHA+ KVTSV+GHV
Sbjct: 1 MAP-TVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFPPAYQ+W ++P+DLF APV ++E NPK HI RHL QEARGC +LVLWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENIC+EVI+CTG ++ R++ RA+FSSVTEKDI+ AM NLV P+++EALAVDARQEID
Sbjct: 120 ENICYEVIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEID 179
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQT YFQGKYGNLDSR IS
Sbjct: 180 LKVGVAFTRFQTRYFQGKYGNLDSRVIS 207
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/204 (75%), Positives = 176/204 (86%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
+VLMVAEKPSIALSIA+VLS G++ TR+ STEVHEFDGMF G A+ +VTSV+GHVF +D
Sbjct: 6 RVLMVAEKPSIALSIASVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSVD 65
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
FP YQ+W +P DLF AP+ K ESNPK HICRHL+ EARGC ++VLWLDCDREGENIC
Sbjct: 66 FPEKYQNWATIDPQDLFDAPILKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENIC 125
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
FEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDLKVG
Sbjct: 126 FEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKVG 185
Query: 185 VAFTRFQTTYFQGKYGNLDSRFIS 208
VAF+RFQT+YFQGKY NLD R IS
Sbjct: 186 VAFSRFQTSYFQGKYQNLDCRVIS 209
>gi|62319698|dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/205 (75%), Positives = 176/205 (85%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L+VLMVAEKPSIALSIA+VLS G++ TR STEVHEFDGMF G A+ +VTSV+GHVF +
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQMSTRGGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSV 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQ+W +P DLF AP+ K ESNPK HICRHL+ EARGC ++VLWLDCDREGENI
Sbjct: 65 DFPEKYQNWATIDPQDLFGAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENI 124
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDLKV
Sbjct: 125 CFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKV 184
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAF+RFQT+YFQGKY NLD R IS
Sbjct: 185 GVAFSRFQTSYFQGKYQNLDCRVIS 209
>gi|357159190|ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium
distachyon]
Length = 868
Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/208 (73%), Positives = 178/208 (85%), Gaps = 1/208 (0%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP KVLMVAEKPSIALSIA+ +SGG++ TRK ST+VHEFDG F GS A+ +VTSV+GHV
Sbjct: 1 MAP-KVLMVAEKPSIALSIASAISGGRMSTRKGSTDVHEFDGTFQGSQAFFRVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +DFPPAYQ+W ++P+DLF APV ++E NPKVHI RHL QEARGC +L+LWLDCDREG
Sbjct: 60 FSVDFPPAYQNWEGTDPVDLFNAPVLRSECNPKVHIRRHLAQEARGCTYLILWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENIC+EVI CTG N+ R++ RA+FSSVTEKDI AM NLV PN++EAL+VDARQEID
Sbjct: 120 ENICYEVINCTGIPENEVGRRIFRAKFSSVTEKDISNAMDNLVLPNKDEALSVDARQEID 179
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LKVGVAFTRFQT YFQGKYGNLDSR IS
Sbjct: 180 LKVGVAFTRFQTRYFQGKYGNLDSRVIS 207
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa]
gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa]
Length = 837
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/181 (80%), Positives = 162/181 (89%)
Query: 28 LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHK 87
+++RK +TEVHEF+GMF G AY KVTSV+GHVF +DFP YQDW A++P DLFQAP+HK
Sbjct: 1 MHSRKGTTEVHEFEGMFNGFRAYFKVTSVIGHVFSVDFPAKYQDWAATDPADLFQAPIHK 60
Query: 88 AESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARF 147
AE+NPK HICRHL+QEARGC HLVLWLDCDREGENICFEVI+CTGFQ ND RRKV+RARF
Sbjct: 61 AEANPKAHICRHLSQEARGCNHLVLWLDCDREGENICFEVIQCTGFQANDDRRKVYRARF 120
Query: 148 SSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFI 207
SSVTEKDILKAM LVEPN EALAVDARQEIDLKVGVAFTRFQT++FQGKYGNLDSR I
Sbjct: 121 SSVTEKDILKAMNCLVEPNEYEALAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSRVI 180
Query: 208 S 208
S
Sbjct: 181 S 181
>gi|168067110|ref|XP_001785468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662910|gb|EDQ49709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 869
Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/209 (64%), Positives = 164/209 (78%), Gaps = 2/209 (0%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP VLMVAEKPSIALSIA LS G++ +R++ EVHEFDG F G+ KVTSV+GHV
Sbjct: 1 MAP-SVLMVAEKPSIALSIANFLSHGRMSSRRSYLEVHEFDGSFRGTSVRFKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFPP YQ W+ ++P +LF+AP K ESNPK H+C+HL QEARGC +LVLWLDCDREG
Sbjct: 60 LSIDFPPKYQSWDTTDPFELFEAPTIKNESNPKAHVCKHLQQEARGCDYLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENICFEV+E + ++V RA+FS+++EKD+ AM L EPN++E+L+VDARQEI
Sbjct: 120 ENICFEVMESAVPVLRKLPGQQVFRAKFSAISEKDVRVAMNTLGEPNKDESLSVDARQEI 179
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DLKVGVAFTRFQT YFQGKYGNLDS IS
Sbjct: 180 DLKVGVAFTRFQTRYFQGKYGNLDSSVIS 208
>gi|4263718|gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/182 (71%), Positives = 151/182 (82%), Gaps = 7/182 (3%)
Query: 9 VAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPA 68
VAEKPSIALSIA+VLS G++ TR+ STEVHEFDGMF G A+ +VTSV+GHVF +DFP
Sbjct: 40 VAEKPSIALSIASVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSVDFPEK 99
Query: 69 YQDWNASNPLDLFQAPVHKAESNPKV-------HICRHLNQEARGCGHLVLWLDCDREGE 121
YQ+W +P DLF AP+ K ESNPKV HICRHL+ EARGC ++VLWLDCDREGE
Sbjct: 100 YQNWATIDPQDLFDAPIIKKESNPKVNIFKSQAHICRHLSNEARGCSYMVLWLDCDREGE 159
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NICFEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDL
Sbjct: 160 NICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDL 219
Query: 182 KV 183
K+
Sbjct: 220 KI 221
>gi|302765975|ref|XP_002966408.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
gi|300165828|gb|EFJ32435.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
Length = 871
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/193 (66%), Positives = 153/193 (79%), Gaps = 3/193 (1%)
Query: 19 IATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPL 78
+A+ LS G++ TRK+ +VHEFDG F G A+ KVTSV+GHV+ +DFPP YQ+W ++PL
Sbjct: 2 LASFLSSGRMSTRKSYLDVHEFDGTFRGFQAHYKVTSVIGHVYGIDFPPKYQNWELTDPL 61
Query: 79 DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138
DLF AP K E+NPK H+C+HL QEARGC LVLWLDCDREGENICFEV+E V
Sbjct: 62 DLFGAPTLKNEANPKAHVCKHLRQEARGCDSLVLWLDCDREGENICFEVME-NALPVMKK 120
Query: 139 R--RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
R ++V RARFS+V+EKD+ AM +LVEPN+NEALAVDARQEIDLKVGVAFTRFQT +FQ
Sbjct: 121 RSGQQVFRARFSAVSEKDVKTAMSSLVEPNQNEALAVDARQEIDLKVGVAFTRFQTRFFQ 180
Query: 197 GKYGNLDSRFISL 209
GKYGNLDS IS
Sbjct: 181 GKYGNLDSSVISF 193
>gi|384249381|gb|EIE22863.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 866
Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 127/204 (62%), Positives = 156/204 (76%), Gaps = 1/204 (0%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VL+VAEKPS+ALSIAT LS + RK+ +VHE+DG F G A+ ++TSV+GHV +DF
Sbjct: 8 VLLVAEKPSLALSIATFLSQSQARYRKSYLDVHEWDGKFQGRAAHFRMTSVIGHVLSIDF 67
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP YQ+W ++P LF AP K E+ PK H+C+HL QEARGC +LVLWLDCDREGENICF
Sbjct: 68 PPKYQNWETTDPASLFDAPTVKTEATPKAHVCKHLQQEARGCSYLVLWLDCDREGENICF 127
Query: 126 EVIECT-GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
EV++ T + V ++V RARFS+++ +IL AM L EPNR EA AVDARQE+DLKVG
Sbjct: 128 EVMDNTLKWMVRVPGQQVFRARFSAISAPEILAAMERLGEPNRAEAEAVDARQELDLKVG 187
Query: 185 VAFTRFQTTYFQGKYGNLDSRFIS 208
VAFTRFQT YFQGKYGNLD+ IS
Sbjct: 188 VAFTRFQTRYFQGKYGNLDASVIS 211
>gi|302792781|ref|XP_002978156.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
gi|300154177|gb|EFJ20813.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
Length = 877
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 163/219 (74%), Gaps = 11/219 (5%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP+ VLMVAEKPSIA +A+ LS G++ TRK+ +VHEFDG F G A+ KVTSV+GHV
Sbjct: 1 MAPV-VLMVAEKPSIAGMLASFLSSGRMSTRKSYLDVHEFDGTFRGFQAHYKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH----LNQEARGCGHLVLWLDC 116
+ +DFPP YQ+W ++PLDLF AP K E+NPKV + QEARGC LVLWLDC
Sbjct: 60 YGIDFPPKYQNWELTDPLDLFGAPTLKNEANPKVTSLGNELILTVQEARGCDSLVLWLDC 119
Query: 117 DREGENICFE--VIECTGFQVND----ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
DREGENICFE + F D + ++V RARFS+V+EKD+ AM +LVEPN+NEA
Sbjct: 120 DREGENICFEGSYYWFSLFLSRDIFKRSGQQVFRARFSAVSEKDVKTAMSSLVEPNQNEA 179
Query: 171 LAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
LAVDARQEIDLKVGVAFTRFQT +FQGKYGNLDS IS
Sbjct: 180 LAVDARQEIDLKVGVAFTRFQTRFFQGKYGNLDSSVISF 218
>gi|307105927|gb|EFN54174.1| hypothetical protein CHLNCDRAFT_53167 [Chlorella variabilis]
Length = 860
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/210 (59%), Positives = 157/210 (74%), Gaps = 4/210 (1%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
P+ VLMVAEKPS+A SIA LSGG++ +R + +VH FD F G A K+TSV+GHV
Sbjct: 4 PVTVLMVAEKPSLAKSIAEFLSGGRMSSRHTNLDVHTFDATFRGRPAQFKMTSVIGHVLS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+DFP YQ W+ ++P LF AP K E+NPK +CRHL EA+G +LVLWLDCDREGEN
Sbjct: 64 IDFPAEYQSWDKTDPGTLFDAPTIKCEANPKARVCRHLQGEAKGADYLVLWLDCDREGEN 123
Query: 123 ICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
ICFEV++ T +N A ++V+RARFS+++ +I +AM +LVEPNR EALAVDARQE+DL
Sbjct: 124 ICFEVMDNTVRWMNRVADQQVYRARFSAISAPEIRQAMASLVEPNRAEALAVDARQELDL 183
Query: 182 KVGVAFT---RFQTTYFQGKYGNLDSRFIS 208
KVGVAFT RFQ+ +FQ KYGNLDS IS
Sbjct: 184 KVGVAFTRGCRFQSRFFQAKYGNLDSAVIS 213
>gi|159478116|ref|XP_001697150.1| hypothetical protein CHLREDRAFT_138607 [Chlamydomonas reinhardtii]
gi|158274624|gb|EDP00405.1| predicted protein [Chlamydomonas reinhardtii]
Length = 644
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/214 (55%), Positives = 154/214 (71%), Gaps = 9/214 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VLMVAEKPS+A SIA +LS G++ +R+A+ +VHE++G F G A K+TSV+GHV+ +
Sbjct: 3 LSVLMVAEKPSLAGSIAQILSDGRVASRRAALDVHEWEGRFRGQPARFKMTSVIGHVYSI 62
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF A+ W+ +P L+ AP K E+NPK H+C HL +E RGC LVLWLDCDREGENI
Sbjct: 63 DFTAAFNSWDKVDPSQLYDAPTVKQEANPKAHVCEHLQREGRGCDVLVLWLDCDREGENI 122
Query: 124 CFEVIE---------CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CFEV++ G + ++ V RARFS++T +I AM NLV PN EALAVD
Sbjct: 123 CFEVMDNVVPYMSRRGGGGGGSGGQQTVFRARFSAITAPEIRAAMNNLVSPNEAEALAVD 182
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
ARQE+DL+VGV+FTRFQT +FQG+YGNLD+ IS
Sbjct: 183 ARQELDLRVGVSFTRFQTRFFQGRYGNLDASVIS 216
>gi|302830151|ref|XP_002946642.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
gi|300268388|gb|EFJ52569.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
Length = 896
Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 151/212 (71%), Gaps = 7/212 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L V MVAEKPS+A SIA +LS G+L +R+A+ +VHEF+G F G A K+TSV+GHV+ +
Sbjct: 3 LSVFMVAEKPSLAQSIAQILSDGRLSSRRAALDVHEFEGRFRGQPARFKMTSVIGHVYSI 62
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF A+ W+ +P L+ AP K E+NPK H+C HL +E RGC LVLWLDCDREGENI
Sbjct: 63 DFTAAFNSWDKVDPAQLYDAPTVKLEANPKAHVCEHLQREGRGCDVLVLWLDCDREGENI 122
Query: 124 CFEV----IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
CFEV + G R+ V RARFS++T +I AM NLV PN EALAVDARQE+
Sbjct: 123 CFEVGGWGVRREGKDEPSERQSVLRARFSAITAPEIRAAMSNLVLPNEAEALAVDARQEL 182
Query: 180 DLKVGVAFTRFQTTYFQ---GKYGNLDSRFIS 208
DL+VGV+FTRFQT +FQ G+YGNLD+ IS
Sbjct: 183 DLRVGVSFTRFQTRFFQARDGRYGNLDASVIS 214
>gi|79323918|ref|NP_001031463.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 838
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/145 (77%), Positives = 125/145 (86%)
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP YQ+W +P DLF AP+ K ESNPK HICRHL+ EARGC ++VLWLDCDREGENI
Sbjct: 38 DFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENI 97
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVIE TGF + D++RKV+RARFSSVTEKDI KAM NLVEPNR+EALAVDARQEIDLKV
Sbjct: 98 CFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKV 157
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAF+RFQT+YFQGKY NLD R IS
Sbjct: 158 GVAFSRFQTSYFQGKYQNLDCRVIS 182
>gi|294948596|ref|XP_002785799.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239899907|gb|EER17595.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 850
Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 153/207 (73%), Gaps = 4/207 (1%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VLMVAEKPSIA ++A L GK +R+ + +VHEF+G F GS A++K+TSV GHV+
Sbjct: 4 QVLMVAEKPSIAEALAKSLCKGKYNSRRGVSPVGQVHEFNGEFQGSPAWLKITSVAGHVY 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+DFPP +W+ +P LF++ + E+NPK + +HL E++GC HLVLWLDCDREGE
Sbjct: 64 SIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRMPQHLRSESKGCDHLVLWLDCDREGE 123
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NIC+EV++ ++D R+ V RA+FSS+ KD+ A NL PN+NEAL+VDARQEIDL
Sbjct: 124 NICYEVMQNVAPNLSD-RKNVWRAKFSSLVAKDLQHAYRNLGYPNQNEALSVDARQEIDL 182
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
K GVAFTRFQT YFQGKYG+LDS +S
Sbjct: 183 KTGVAFTRFQTRYFQGKYGDLDSSLVS 209
>gi|195996011|ref|XP_002107874.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
gi|190588650|gb|EDV28672.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
Length = 841
Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 115/207 (55%), Positives = 150/207 (72%), Gaps = 4/207 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLM+AEKPS+A SIA +LS G + TRK +V+E+ G F G A VTSV GHV+
Sbjct: 4 VLMIAEKPSLAQSIAKILSRGTMKTRKGIAKPCQVYEYSGTFHGQQARFSVTSVCGHVYS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF P Y +W+A +P+DL+ A V K ++NP +I + L E +G +LVLWLDCDREGEN
Sbjct: 64 LDFLPQYNNWDAVDPVDLYDAEVKKKDANPDQNIVKFLKHEGQGIDYLVLWLDCDREGEN 123
Query: 123 ICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
ICFEVI+ N + + + RA+FS++T+KDI +AM L+ PN+NEAL+VDARQE+DL
Sbjct: 124 ICFEVIDIVKPVMRNSSSQNIFRAKFSAITDKDIFRAMETLITPNKNEALSVDARQELDL 183
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 RIGCAFTRFQTKYFQGKYGDLDSSLIS 210
>gi|449281995|gb|EMC88926.1| DNA topoisomerase 3-beta-1 [Columba livia]
Length = 862
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 151/211 (71%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F+G A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R R V+RA+FSS+T+ DI AM +L EPNRNEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKPRSTERTVYRAKFSSITDTDICNAMNHLGEPNRNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|410928142|ref|XP_003977460.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Takifugu rubripes]
Length = 713
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 154/211 (72%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + V+E+ G FLG A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGNCSSRKGLNGACSVYEYTGSFLGQAAHFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L EA+GC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMIKFLQVEAKGCCYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + V+RA+FSS+T+ DI KAM +L +PN+NEALAVDARQE
Sbjct: 124 NICFEVLDAIQPVMNQGSTREKSVYRAKFSSITDTDICKAMNSLGDPNQNEALAVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|294889461|ref|XP_002772824.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239877374|gb|EER04640.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 813
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 153/207 (73%), Gaps = 4/207 (1%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VLMVAEKPSIA ++A L GK +R+ + +VHEF+G F GS A++K+TSV GHV+
Sbjct: 4 QVLMVAEKPSIAEALAKSLCKGKYNSRRGVSPVGQVHEFNGEFQGSPAWLKITSVAGHVY 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+DFPP +W+ +P LF++ + E+NPK + +HL E++GC HLVLWLDCDREGE
Sbjct: 64 SIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRMPQHLRSESKGCDHLVLWLDCDREGE 123
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NIC+EV++ ++D R+ V RA+FSS+ KD+ A NL PN+NEAL+VDARQEIDL
Sbjct: 124 NICYEVMQNVVPNLSD-RKNVWRAKFSSLVAKDLQHAYRNLGYPNQNEALSVDARQEIDL 182
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
K GVAFTRFQT YFQGKYG+LDS +S
Sbjct: 183 KTGVAFTRFQTRYFQGKYGDLDSSLVS 209
>gi|327280844|ref|XP_003225161.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Anolis
carolinensis]
Length = 862
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 153/211 (72%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F+G ++ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGACSVHEYTGSFIGQSSHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R R V+RA+FSS+T+ DI AM +L EPN NEAL+VDARQE
Sbjct: 124 NICFEVLDAIVPIMNKPRGSERVVYRAKFSSITDTDICNAMNHLGEPNHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|307219265|ref|NP_001182501.1| topoisomerase (DNA) III beta isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 858
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/211 (56%), Positives = 150/211 (71%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F+G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSASSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+ + + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A R V+RA+FSS+T+ DIL AM L EPN+NEAL+VDARQE
Sbjct: 124 NICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|148228452|ref|NP_001082554.1| topoisomerase (DNA) III beta [Xenopus laevis]
gi|28422192|gb|AAH46848.1| MGC53016 protein [Xenopus laevis]
Length = 858
Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 151/211 (71%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F+G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNASSRKGLNGACSVHEYTGSFMGQNVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L E R C ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRSCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A R V+RA+FSS+T+ DIL AM L EPN+NEAL+VDARQE
Sbjct: 124 NICFEVLDAIHPVMNKAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|326929518|ref|XP_003210910.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Meleagris gallopavo]
Length = 862
Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 150/211 (71%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F+G A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R ++RA+FSS+T+ DI AM +L EPNRNEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKPPSTERTIYRAKFSSITDTDICNAMNHLGEPNRNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|449669651|ref|XP_002153907.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 818
Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/207 (55%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRK---ASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+ALSI+ +LSGG + T+K ++ +HEF+G FLG + K+TSV GHV
Sbjct: 4 VLMVAEKPSLALSISKILSGGNINTKKGVSSACPIHEFNGSFLGENIKFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF + +W+A P++LF A K E+ K++I +HL + LVLWLDCD+EGEN
Sbjct: 64 LDFKGYFNNWDAVEPIELFSAATQKIEAQEKLNIVKHLKVAGKEVDFLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
ICFEVI+C F ++ ++RA FS++T+KDI AM NL +PN+NE+L+VDARQE+DL
Sbjct: 124 ICFEVIDCVKPFMKQSNKQMIYRAHFSAITDKDIKNAMHNLKDPNKNESLSVDARQELDL 183
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+VG AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 RVGCAFTRFQTKYFQGKYGNLDSSLIS 210
>gi|126649305|ref|XP_001388324.1| DNA topoisomerase III beta-1 [Cryptosporidium parvum Iowa II]
gi|32398820|emb|CAD98530.1| DNA topoisomerase III beta-1, probable [Cryptosporidium parvum]
gi|126117418|gb|EAZ51518.1| DNA topoisomerase III beta-1, putative [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 151/210 (71%), Gaps = 5/210 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
M+P+KVLMVAEKPSI+ +I+ +LS GKL TR+ T VHEF+G F+G + +VTSV GHV
Sbjct: 1 MSPIKVLMVAEKPSISDTISRILSNGKLDTRRGKTPVHEFNGTFMGMNVQFRVTSVAGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +DFP +Y +W ++P+ LF AP+ K ES+ K + HL +E++GC +LVLWLDCDREG
Sbjct: 61 FEIDFPQSYSNWEKTDPVSLFDAPIIKNESSSK--MVSHLEKESKGCSYLVLWLDCDREG 118
Query: 121 ENICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
ENICFEVI ++ D R + RA+FSS++ DI AM NL PN+NE+ AVD RQ
Sbjct: 119 ENICFEVINVVSNNMSKGRDQRDWIFRAKFSSISPGDIFFAMKNLTFPNKNESDAVDVRQ 178
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFI 207
E+DLK+GVAF+R QT Y + K+G+ + I
Sbjct: 179 ELDLKIGVAFSRLQTKYLKSKFGDFNKSSI 208
>gi|111120268|gb|ABH06319.1| topoisomerase (DNA) III beta [Bos taurus]
Length = 295
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGSMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N AR + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|326667668|ref|XP_003198651.1| PREDICTED: DNA topoisomerase 3-beta-1 [Danio rerio]
Length = 861
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 150/211 (71%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G TRK + VHE+ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGSCSTRKGLNGACSVHEYMGSFTGQNVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L EA+GC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R V+RA+FSS+T+ DI AM L EPN+NEAL+VDARQE
Sbjct: 124 NICFEVLDAIQPVMNKPYGNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|405959918|gb|EKC25894.1| DNA topoisomerase 3-beta-1 [Crassostrea gigas]
Length = 851
Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 151/209 (72%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMF--LGSHAYIKVTSVVGHV 60
VLMVAEKPS+A SIA +LSGG+L +RK S +HE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSGGQLNSRKGSNGACSIHEYKGKFPPTGESVSYKMTSVCGHV 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F LDF Y W+ +P++LF AP K E+ K+ + L +EARG +LVLWLDCD+EG
Sbjct: 64 FGLDFTGKYNSWDRVDPVELFTAPTLKKEATEKLRMPNFLEKEARGVDYLVLWLDCDKEG 123
Query: 121 ENICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENICFEVI+C +N + + V+RA+FS++T+KDI AM L+ PN+NEAL+VDARQE+
Sbjct: 124 ENICFEVIDCAKPSMNRFSDQCVYRAKFSAITDKDIKSAMTKLIAPNKNEALSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKYFQGKYGDLDSTLIS 212
>gi|296478358|tpg|DAA20473.1| TPA: topoisomerase (DNA) III beta [Bos taurus]
Length = 734
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGSMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N AR + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|332000010|ref|NP_001193635.1| DNA topoisomerase 3-beta-1 [Bos taurus]
Length = 861
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGSMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N AR + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|291190792|ref|NP_001167403.1| DNA topoisomerase 3-beta-1 [Salmo salar]
gi|223648214|gb|ACN10865.1| DNA topoisomerase 3-beta-1 [Salmo salar]
Length = 857
Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 149/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYMGTFSGQSVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFTKAPTEKKEANPKLNMVKFLQVEGKGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + R V+RA+FSS+T+ DI AM L EPNRNEAL+VDARQE
Sbjct: 124 NICFEVLDAIEPVMNRPYGSERTVYRAKFSSITDTDIWAAMNKLGEPNRNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|57525152|ref|NP_001006181.1| DNA topoisomerase 3-beta-1 [Gallus gallus]
gi|53132094|emb|CAG31872.1| hypothetical protein RCJMB04_12m15 [Gallus gallus]
gi|66796187|dbj|BAD99111.1| topoisomerase III beta [Gallus gallus]
Length = 862
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 149/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK VHE+ G F+G A+ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + R ++RA+FSS+T+ DI AM +L EPN NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|348543167|ref|XP_003459055.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Oreochromis
niloticus]
Length = 858
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 150/209 (71%), Gaps = 5/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A +IA +LS G +RK + VHE+ G+F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQAIAKILSKGNCTSRKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L EARG +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NICFEV++ +N + R V+RA+FSS+T+ DI AM L EPNRNEAL+VDARQE+D
Sbjct: 124 NICFEVLDAIQPVMNKGSARSVYRAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LRIGCAFTRFQTKYFQGKYGNLDSSLISF 212
>gi|348543165|ref|XP_003459054.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Oreochromis
niloticus]
Length = 856
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 150/209 (71%), Gaps = 5/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A +IA +LS G +RK + VHE+ G+F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQAIAKILSKGNCTSRKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L EARG +VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NICFEV++ +N + R V+RA+FSS+T+ DI AM L EPNRNEAL+VDARQE+D
Sbjct: 124 NICFEVLDAIQPVMNKGSARSVYRAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LRIGCAFTRFQTKYFQGKYGNLDSSLISF 212
>gi|324504807|gb|ADY42072.1| DNA topoisomerase 3-beta-1 [Ascaris suum]
Length = 858
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 144/212 (67%), Gaps = 8/212 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V+MVAEKP +A SIA +LS GK RK V E+DG F+G KVTS GHV
Sbjct: 4 VIMVAEKPMLAESIAKLLSNGKAQKRKGRNGVCSVSEYDGEFMGRSVRFKVTSTCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF P + +W ++P+ LF AP K E+NPK+ + L EARGC +LVLWLDCD+EGEN
Sbjct: 64 LDFLPKFNNWERTDPVQLFAAPTEKKEANPKLKMNEFLAFEARGCEYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARRK-----VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
ICFEVIE + R V+RA FS++TEKDI AM NL+ PN NE+L+VDARQ
Sbjct: 124 ICFEVIEAVKRSLKAPRSGNLMDIVYRAHFSAITEKDIKGAMRNLIRPNENESLSVDARQ 183
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
E+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 ELDLRIGCAFTRFQTRYFQGKYGDLDSTCISF 215
>gi|440895796|gb|ELR47898.1| DNA topoisomerase 3-beta-1, partial [Bos grunniens mutus]
Length = 816
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/211 (56%), Positives = 147/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGSMSSRKGLNGTCSVHEYSGAFAGQPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQAHSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|170583127|ref|XP_001896443.1| DNA topoisomerase III beta-1 [Brugia malayi]
gi|158596370|gb|EDP34727.1| DNA topoisomerase III beta-1, putative [Brugia malayi]
Length = 858
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 8/217 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAPL V+MVAEKP +A SIA +L+ GK+ RK V E+ G F G A KVTS
Sbjct: 1 MAPLTVMMVAEKPMLAESIAKILADGKVEKRKGWNNVCSVSEYCGQFQGQSAIFKVTSTC 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDFPP +W +P+ LF + K E+NPK+ + +L EA+GC LVLWLDCD
Sbjct: 61 GHIMSLDFPPKMNNWEKVDPVMLFSSSTAKKEANPKMRMNEYLASEAKGCDFLVLWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
+EGENICFEVIE + ++ V+RA FS++T KDI AM NL PN NE+L+
Sbjct: 121 KEGENICFEVIEAVRNSIKKSKTGDIMGNVYRAHFSAITAKDIKSAMRNLGRPNINESLS 180
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
VDARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 181 VDARQELDLRIGCAFTRFQTRYFQGKYGNLDSTTISF 217
>gi|260805074|ref|XP_002597412.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
gi|229282677|gb|EEN53424.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
Length = 858
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 147/210 (70%), Gaps = 6/210 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LSGG L +RK + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAQILSGGSLKSRKGINGACSVHEYTGKFHGESVKFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+ +P DLF+AP +K E+NP + + + L E RG LVLWLDCD+EGEN
Sbjct: 64 LDFQGVYNNWDRVDPADLFRAPTNKKEANPNLKMPKFLELEGRGADILVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARRK---VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ICFEVI+ +N R + ++R++FS++TE DI AM L EPN NEA++VDARQE+
Sbjct: 124 ICFEVIDAVRPSMNRPRGREQYIYRSKFSAITETDIRGAMMRLGEPNENEAMSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
DL++G AFTRFQT +FQGKYG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQGKYGDLDSSLISF 213
>gi|149720154|ref|XP_001493576.1| PREDICTED: DNA topoisomerase 3-beta-1 [Equus caballus]
Length = 862
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSMSSHKGLNGTCSVHEYTGTFAGQAVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|313239950|emb|CBY32313.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 9/210 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST----EVHEFDGMFLGSHAYIKVTSVVGH 59
+ VLMVAEKPS+A SIA +LS + TR A T +VHE+ G + G A KVTSV GH
Sbjct: 2 VNVLMVAEKPSLAHSIAEILSNRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
VF +DF + +W+ ++P +LF A K E+NPK+H+ +HL E+ C LVLWLDCDRE
Sbjct: 62 VFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDRE 121
Query: 120 GENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENICFEV+ C + N+ R RA FS++T+KDI KAM NL PN+ E+LAVDARQE
Sbjct: 122 GENICFEVMSCIPHIRGNNVR----RAHFSAITDKDIKKAMANLGSPNKLESLAVDARQE 177
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 178 LDLRIGCAFTRFQTKFFQGQYGDLDSNCIS 207
>gi|426247933|ref|XP_004017724.1| PREDICTED: DNA topoisomerase 3-beta-1 [Ovis aries]
Length = 709
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGSMSSRKGLNGACSVHEYSGAFEGQPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+ + + L E RGC +VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDRVDPAELFSQAPTEKKEANPKLSMVKFLQVEGRGCDCIVLWLDCDKEGE 123
Query: 122 NICFEVIECT---GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ Q + + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMKQTHSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|313229708|emb|CBY18523.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 9/210 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST----EVHEFDGMFLGSHAYIKVTSVVGH 59
+ VLMVAEKPS+A SIA +LS + TR A T +VHE+ G + G A KVTSV GH
Sbjct: 2 VNVLMVAEKPSLAHSIAEILSNRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
VF +DF + +W+ ++P +LF A K E+NPK+H+ +HL E+ C LVLWLDCDRE
Sbjct: 62 VFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDRE 121
Query: 120 GENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENICFEV+ C + N+ R RA FS++T+KDI KAM NL PN+ E+LAVDARQE
Sbjct: 122 GENICFEVMSCIPHIRGNNVR----RAHFSAITDKDIKKAMANLGSPNKLESLAVDARQE 177
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 178 LDLRIGCAFTRFQTKFFQGQYGDLDSNCIS 207
>gi|313224215|emb|CBY32300.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 9/210 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST----EVHEFDGMFLGSHAYIKVTSVVGH 59
+ VLMVAEKPS+A SIA +LS + TR A T +VHE+ G + G A KVTSV GH
Sbjct: 2 VNVLMVAEKPSLAHSIAEILSNRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
VF +DF + +W+ ++P +LF A K E+NPK+H+ +HL E+ C LVLWLDCDRE
Sbjct: 62 VFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDRE 121
Query: 120 GENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENICFEV+ C + N+ R RA FS++T+KDI KAM NL PN+ E+LAVDARQE
Sbjct: 122 GENICFEVMSCIPHIRGNNVR----RAHFSAITDKDIKKAMNNLGSPNKLESLAVDARQE 177
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 178 LDLRIGCAFTRFQTKFFQGQYGDLDSNCIS 207
>gi|255073139|ref|XP_002500244.1| predicted protein [Micromonas sp. RCC299]
gi|226515506|gb|ACO61502.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 146/205 (71%), Gaps = 3/205 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VL VAEKPS+A SIA LS GK +R+ EVHEF+ F G+ + KVT+V+GHV +DF
Sbjct: 7 VLCVAEKPSLAASIAGFLSEGKHRSRRGGQEVHEFERDFNGARCHFKVTAVIGHVLSIDF 66
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Q W+ +P LF APV K E+ PK + HL +EA+G HL+LWLDCDREGENICF
Sbjct: 67 PAKFQSWDL-DPAILFDAPVQKKEATPKARVVEHLEREAKGASHLILWLDCDREGENICF 125
Query: 126 EVIECTG--FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
EVI+ + N VHRA+FS+V+++ I +AM L PNR EALAVDARQE+DLKV
Sbjct: 126 EVIDACAPVMRPNRGDTFVHRAKFSAVSKESIERAMRTLGAPNRAEALAVDARQELDLKV 185
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFIS 208
GVAFTRFQT +FQG+Y +LD+ IS
Sbjct: 186 GVAFTRFQTRFFQGRYSHLDASVIS 210
>gi|354481406|ref|XP_003502892.1| PREDICTED: DNA topoisomerase 3-beta-1 [Cricetulus griseus]
gi|344253468|gb|EGW09572.1| DNA topoisomerase 3-beta-1 [Cricetulus griseus]
Length = 862
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVQPVMNNAHSGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|410977257|ref|XP_003995024.1| PREDICTED: DNA topoisomerase 3-beta-1 [Felis catus]
Length = 862
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGTCSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND---ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPIMNPTHGGEKTVFRARFSSITDMDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|355725619|gb|AES08614.1| topoisomerase III beta [Mustela putorius furo]
Length = 861
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPAHGGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|157786738|ref|NP_001099331.1| DNA topoisomerase 3-beta-1 [Rattus norvegicus]
gi|149019716|gb|EDL77864.1| topoisomerase (DNA) III beta (predicted) [Rattus norvegicus]
Length = 862
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDTDICNAMTRLTEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|335301482|ref|XP_003359220.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sus scrofa]
Length = 859
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSRGNMSSHKGLNGTCSVHEYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM +L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNQAHGSEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|395862158|ref|XP_003803330.1| PREDICTED: DNA topoisomerase 3-beta-1 [Otolemur garnettii]
Length = 862
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 147/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM +L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDTVLPVMNKAHGGEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|388454142|ref|NP_001253336.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
gi|355784822|gb|EHH65673.1| hypothetical protein EGM_02484 [Macaca fascicularis]
gi|383412047|gb|AFH29237.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|296191436|ref|XP_002743624.1| PREDICTED: DNA topoisomerase 3-beta-1 [Callithrix jacchus]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|402883653|ref|XP_003905324.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Papio anubis]
gi|402883655|ref|XP_003905325.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Papio anubis]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|380787141|gb|AFE65446.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|158255430|dbj|BAF83686.1| unnamed protein product [Homo sapiens]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|297716768|ref|XP_002834672.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pongo abelii]
gi|297716770|ref|XP_002834673.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 3 [Pongo abelii]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|12803239|gb|AAH02432.1| Topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|332859251|ref|XP_515006.3| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan troglodytes]
gi|332859253|ref|XP_003317172.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan troglodytes]
gi|410207778|gb|JAA01108.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410256630|gb|JAA16282.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410290228|gb|JAA23714.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410350957|gb|JAA42082.1| topoisomerase (DNA) III beta [Pan troglodytes]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|8918930|dbj|BAA97984.1| unnamed protein product [Mus musculus]
Length = 464
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|4507635|ref|NP_003926.1| DNA topoisomerase 3-beta-1 [Homo sapiens]
gi|6686033|sp|O95985.1|TOP3B_HUMAN RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|4768877|gb|AAD29670.1|AF125216_1 DNA topoisomerase III beta [Homo sapiens]
gi|4102879|gb|AAD01614.1| DNA topoisomerase III beta [Homo sapiens]
gi|4321652|gb|AAD15791.1| DNA topoisomerase III beta [Homo sapiens]
gi|47678723|emb|CAG30482.1| TOP3B [Homo sapiens]
gi|109451532|emb|CAK54627.1| TOP3B [synthetic construct]
gi|109452128|emb|CAK54926.1| TOP3B [synthetic construct]
gi|119579891|gb|EAW59487.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579892|gb|EAW59488.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579894|gb|EAW59490.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579895|gb|EAW59491.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|208965626|dbj|BAG72827.1| topoisomerase (DNA) III beta [synthetic construct]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|355570227|gb|EHH25612.1| hypothetical protein EGK_21503 [Macaca mulatta]
Length = 862
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|397472510|ref|XP_003807785.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan paniscus]
gi|397472512|ref|XP_003807786.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan paniscus]
Length = 862
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDVVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|148665015|gb|EDK97431.1| topoisomerase (DNA) III beta, isoform CRA_b [Mus musculus]
Length = 469
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 9 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 68
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 69 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 128
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 129 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 188
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 189 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 219
>gi|126324756|ref|XP_001363870.1| PREDICTED: DNA topoisomerase 3-beta-1 [Monodelphis domestica]
Length = 862
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHEYSGSFSGQTVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFTGKYNHWDRVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKPRGTEKTVFRARFSSITDTDICNAMSRLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|148665014|gb|EDK97430.1| topoisomerase (DNA) III beta, isoform CRA_a [Mus musculus]
Length = 867
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 9 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 68
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 69 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 128
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 129 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 188
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 189 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 219
>gi|6755851|ref|NP_035754.1| DNA topoisomerase 3-beta-1 [Mus musculus]
gi|6686042|sp|Q9Z321.1|TOP3B_MOUSE RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|3868800|dbj|BAA34227.1| topoisomerase III beta [Mus musculus]
gi|21594767|gb|AAH31723.1| Topoisomerase (DNA) III beta [Mus musculus]
gi|74138777|dbj|BAE27200.1| unnamed protein product [Mus musculus]
gi|74194881|dbj|BAE26026.1| unnamed protein product [Mus musculus]
gi|148665016|gb|EDK97432.1| topoisomerase (DNA) III beta, isoform CRA_c [Mus musculus]
Length = 862
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|426393714|ref|XP_004063158.1| PREDICTED: DNA topoisomerase 3-beta-1 [Gorilla gorilla gorilla]
Length = 653
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|73995957|ref|XP_534771.2| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Canis lupus
familiaris]
Length = 862
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPTHSGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|432094881|gb|ELK26289.1| DNA topoisomerase 3-beta-1 [Myotis davidii]
Length = 836
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGTCSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPGRGGEKTVFRARFSSITDTDICSAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|301792373|ref|XP_002931153.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Ailuropoda melanoleuca]
Length = 862
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND---ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPTHGGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 214
>gi|221505540|gb|EEE31185.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii VEG]
Length = 842
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 141/211 (66%), Gaps = 19/211 (9%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKPSIA +IA +LSGG + RK T V EF G F G KVTS
Sbjct: 1 MAP-AVLMVAEKPSIAETIARILSGGNFHKRKGISPVTSVWEFSGSFRGEAVLFKVTSTA 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+++ DFP + DW +NP++LF APV K E+N K + HL +EA GC HLVLWLDCD
Sbjct: 60 GHIYQTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHRLPAHLQKEAHGCKHLVLWLDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENICFE + RA+FS++ DI +AM L PN+NEA +VDARQ
Sbjct: 120 REGENICFE---------------IWRAKFSALAPADIQQAMRTLGTPNKNEADSVDARQ 164
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DLKVG AFTRFQT YFQGKYG+LD+ +S
Sbjct: 165 ELDLKVGCAFTRFQTQYFQGKYGDLDASLVS 195
>gi|237838573|ref|XP_002368584.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
gi|211966248|gb|EEB01444.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
Length = 841
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 141/211 (66%), Gaps = 19/211 (9%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKPSIA +IA +LSGG + RK T V EF G F G KVTS
Sbjct: 1 MAP-AVLMVAEKPSIAETIARILSGGNFHKRKGISPVTSVWEFSGSFRGEAVLFKVTSTA 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+++ DFP + DW +NP++LF APV K E+N K + HL +EA GC HLVLWLDCD
Sbjct: 60 GHIYQTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHRLPAHLQKEAHGCKHLVLWLDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENICFE+ RA+FS++ DI +AM L PN+NEA +VDARQ
Sbjct: 120 REGENICFEIW---------------RAKFSALAPADIQQAMRTLGTPNKNEADSVDARQ 164
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DLKVG AFTRFQT YFQGKYG+LD+ +S
Sbjct: 165 ELDLKVGCAFTRFQTQYFQGKYGDLDASLVS 195
>gi|417405013|gb|JAA49232.1| Putative dna topoisomerase iii alpha [Desmodus rotundus]
Length = 862
Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSMSSHKGLNGTCSVHEYTGTFAGQTVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNPAHGGDKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|344295392|ref|XP_003419396.1| PREDICTED: DNA topoisomerase 3-beta-1 [Loxodonta africana]
Length = 862
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VFMVAEKPSLAQSIAKILSRGSMSSHKGLNGACSVHEYTGTFTGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|241721971|ref|XP_002404156.1| topoisomerase I, putative [Ixodes scapularis]
gi|215505336|gb|EEC14830.1| topoisomerase I, putative [Ixodes scapularis]
Length = 857
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRK---ASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKP++A S+A +LS G + +RK ++ V+E+ G F A K+TSV GHV
Sbjct: 4 VLMVAEKPALAQSLAAILSNGTMKSRKGISSACTVYEYMGKFKNEPARFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y W+ +P +LF AP K E+NPK+ + R L +E +GC +LVLWLDCD+EGEN
Sbjct: 64 TDFTGKYNSWDRVDPAELFSAPTEKKEANPKLQLPRFLEKEGQGCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVND----ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ICFEVI + ++ + RA+FS++T+KDI AM LVEPN NEA +VDARQE
Sbjct: 124 ICFEVINIVKPVLKRPATYGQQFIFRAKFSAITDKDIKAAMNMLVEPNENEARSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS FIS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGNLDSSFISF 214
>gi|91081101|ref|XP_975504.1| PREDICTED: similar to prokaryotic DNA topoisomerase [Tribolium
castaneum]
gi|270005298|gb|EFA01746.1| hypothetical protein TcasGA2_TC007344 [Tribolium castaneum]
Length = 852
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 146/209 (69%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A S+A++LS G TRK S VHE++G F G+ A +K+TSV GHV
Sbjct: 4 VFMVAEKPSLAASLASILSNGSNSTRKGSNGICSVHEWNGTFQGAPARLKMTSVCGHVMG 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+DF Y +W+ +P++LF P+ K E+ PK + L+ EA+GC +LVLWLDCD+EGEN
Sbjct: 64 VDFISKYNNWDRVDPVELFSCPIEKKEATPKFKMPAFLSHEAKGCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVND---ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ICFEV+ +N + + RARFS++T+KDI A NL PN NEA +VDARQE+
Sbjct: 124 ICFEVMNSVARSMNGDVYSDKVTFRARFSAITDKDIKAAFNNLAHPNENEARSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQGRYGDLDSSLIS 212
>gi|351706851|gb|EHB09770.1| DNA topoisomerase 3-beta-1 [Heterocephalus glaber]
Length = 862
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSMSSHKGLNGACSVHEYTGTFDSQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHSGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|156393418|ref|XP_001636325.1| predicted protein [Nematostella vectensis]
gi|156223427|gb|EDO44262.1| predicted protein [Nematostella vectensis]
Length = 856
Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 146/208 (70%), Gaps = 5/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA LS G++ +RK + VHE+ G F K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKFLSNGRMNSRKGLNGACSVHEYSGSFRNEPVKFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+A +PL+LF A K E+ K+ + + L+ EA+G +LVLWLDCD+EGEN
Sbjct: 64 LDFHHKYNNWDAVDPLELFTATTLKKEATEKLQMPKFLSHEAKGVDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEV+EC +N + V RA+FS++TEKDI AM L +PN+NE+L+VDARQE+D
Sbjct: 124 ICFEVMECVRNSMNKRPGEQTVFRAKFSAITEKDIAGAMQKLGQPNKNESLSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G AFTRFQT YFQ KYG+LDS IS
Sbjct: 184 LRIGCAFTRFQTKYFQNKYGDLDSALIS 211
>gi|209878332|ref|XP_002140607.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209556213|gb|EEA06258.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 857
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 141/206 (68%), Gaps = 5/206 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPSIA ++A VLS G L TR+ T VHE+ F A KVTSV GHVF DF
Sbjct: 31 VLMVAEKPSIAETVAKVLSNGNLNTRQCKTPVHEYTAYFQHKRALFKVTSVSGHVFETDF 90
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y +W + +P+DLF P K ES+ K + HL +EA+ C LVLWLDCDREGENICF
Sbjct: 91 PSKYSNWESIDPVDLFDLPTVKNESSSK--MIAHLLREAKNCDFLVLWLDCDREGENICF 148
Query: 126 EVIECTGFQVNDARRK---VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
EVI + R + + RARFSSV KD+++AM NL PNR+EA AVD RQE+DLK
Sbjct: 149 EVISVVKDVMAKGRNESLWIFRARFSSVAPKDVIEAMNNLKSPNRDEADAVDVRQELDLK 208
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
+GVAF+RFQTTY + KYG+ ++ +S
Sbjct: 209 IGVAFSRFQTTYLKTKYGDFNNSILS 234
>gi|348585379|ref|XP_003478449.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cavia porcellus]
Length = 862
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VFMVAEKPSLAQSIAKILSRGGMSSHKGLNGACSVHEYMGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVN---DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N + + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKTHNGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>gi|422293447|gb|EKU20747.1| DNA topoisomerase III [Nannochloropsis gaditana CCMP526]
Length = 870
Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/204 (57%), Positives = 144/204 (70%), Gaps = 8/204 (3%)
Query: 8 MVAEKPSIALSIATVL-SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
MVAEKPSI +IA L +G ++ TR S VHEF G F G A I+VTSV GHVF DFP
Sbjct: 1 MVAEKPSICNAIANALCAGAEMSTRGRSPPVHEFHGRFEGQSARIRVTSVTGHVFSTDFP 60
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y +W A +P+DLF+AP K ++ I HL E +G LVLWLDCDREGENICFE
Sbjct: 61 GQYSNWEAVDPVDLFKAPTRKEPTSK--FITHHLASEGKGADILVLWLDCDREGENICFE 118
Query: 127 VIEC--TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
VIEC GF+ A ++ RA FS++T KDI +A+ L PN++EAL+VDARQE+DLKVG
Sbjct: 119 VIECMQPGFK---AHTRILRAHFSAITPKDIHRALQKLGVPNKDEALSVDARQELDLKVG 175
Query: 185 VAFTRFQTTYFQGKYGNLDSRFIS 208
VAF+RFQT YFQGKYG+LD+ +S
Sbjct: 176 VAFSRFQTRYFQGKYGDLDATLVS 199
>gi|428178584|gb|EKX47459.1| hypothetical protein GUITHDRAFT_69656 [Guillardia theta CCMP2712]
Length = 807
Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/214 (53%), Positives = 143/214 (66%), Gaps = 12/214 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ V+MVAEKPSI +IA LSGG T+ + VH F F+GS A KVTSVVGHVF
Sbjct: 2 VTVVMVAEKPSICNAIAIALSGGNHETKGGTPPVHTFRSNFMGSSALFKVTSVVGHVFST 61
Query: 64 DFPPAYQDWNASNPLDLFQAPVH-KAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFP AYQ W+ +P+ LF APV KAE VH+ L E +G +LVLWLDCDREGEN
Sbjct: 62 DFPSAYQSWDKVDPVTLFDAPVEKKAEKKGVVHL---LQNEGKGADYLVLWLDCDREGEN 118
Query: 123 ICFEVIEC--------TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
ICFEVI C + ++++ RA+FS++ DI AM L PN NE+L+V+
Sbjct: 119 ICFEVISCIMPEALSRKELRTPGPKQRIFRAKFSAINPNDIKNAMMTLGAPNENESLSVE 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
ARQE+DLKVGVAF+R+QT YFQGKY +LDSR +S
Sbjct: 179 ARQELDLKVGVAFSRYQTRYFQGKYSDLDSRIVS 212
>gi|401401464|ref|XP_003881018.1| DNA topoisomerase, related [Neospora caninum Liverpool]
gi|325115430|emb|CBZ50985.1| DNA topoisomerase, related [Neospora caninum Liverpool]
Length = 924
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/261 (47%), Positives = 150/261 (57%), Gaps = 54/261 (20%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKPSIA +IA +LSGG + RK T V EF G F G + KVTS
Sbjct: 1 MAP-GVLMVAEKPSIAETIAKILSGGDFHKRKGISPVTSVWEFPGTFRGEAVHFKVTSTA 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+F+ DFP Y DW +NP++LF APV K E+NPK + HL +EA GC LVLWLDCD
Sbjct: 60 GHIFQTDFPRQYNDWEKTNPVELFDAPVVKVEANPKHRLPAHLQKEAHGCKFLVLWLDCD 119
Query: 118 REGENICFEVI--------ECTGFQVNDAR------------------------------ 139
REGENICFEVI + G Q R
Sbjct: 120 REGENICFEVIGIVAPHLPKLPGGQQQARRARLRKHTSREGETPATGSNRQAQESLEQTL 179
Query: 140 ------------RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAF 187
+K+ RA+FS++ DI KAM L PN+NE+ +VDARQE+DLKVG AF
Sbjct: 180 SAVAGMVPPKRCKKIWRAKFSALAHADIQKAMRTLGSPNKNESDSVDARQELDLKVGCAF 239
Query: 188 TRFQTTYFQGKYGNLDSRFIS 208
TRFQT YFQGKYG+LD+ +S
Sbjct: 240 TRFQTQYFQGKYGDLDASLVS 260
>gi|357611732|gb|EHJ67631.1| putative prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 848
Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 141/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
LMVAEKPS+A ++A +LS GK T K S VHE+ G F K+TSV GHV
Sbjct: 4 ALMVAEKPSLAQNLANILSNGKCNTNKGSNSACAVHEWTGTFKNEPVKFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+ +P++LF P K E+ P++ I L QEARGC +L+LWLDCD+EGEN
Sbjct: 64 LDFTGKYNNWDKVDPVELFICPTEKKEAMPRLRIPAFLAQEARGCDYLILWLDCDKEGEN 123
Query: 123 ICFEVIECT-GFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ICFEV+ C + D RARFS++T+KDI AM NLV PN +E+ +VDARQE+
Sbjct: 124 ICFEVMSCVQNYMKGDVYSPAVTFRARFSAITDKDIKTAMMNLVRPNESESRSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT YFQG+YG+LD+ IS
Sbjct: 184 DLRIGCAFTRFQTKYFQGRYGDLDASLIS 212
>gi|157129809|ref|XP_001655482.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108872077|gb|EAT36302.1| AAEL011603-PA [Aedes aegypti]
Length = 856
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 143/207 (69%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+AT+LS GK +RK S VHE+ G F G K+TSV GH+ L
Sbjct: 5 LMVAEKPSLAASLATILSNGKCSSRKGSNNACSVHEWFGNFRGEQVKFKMTSVCGHIMGL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+F + W+ +P +LF P K ES P + + L+QEA+GC +L+LWLDCD+EGENI
Sbjct: 65 EFVGKFNSWDKVDPAELFSCPTEKKESTPNLRMPAFLSQEAKGCEYLILWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEV+ + + + R +RA+FS++T+KDI AM NL+ PN NEA +VDARQE+DL
Sbjct: 125 CFEVMAAVSGVMRNVFSNRVTYRAKFSAITDKDIKYAMDNLIHPNENEAKSVDARQELDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKY +LD+ IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYADLDASLIS 211
>gi|391327272|ref|XP_003738127.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Metaseiulus
occidentalis]
Length = 851
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 141/207 (68%), Gaps = 4/207 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A S+A +LS +RKA + VHE++G F S A K+TSV GHV
Sbjct: 7 VFMVAEKPSLAQSLANILSNDNCKSRKAMNGACSVHEWNGNFQKSSARFKMTSVCGHVMT 66
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y +W+ +P +LF AP+ K E+ PK+H+ + L+ EA G +VLWLDCD+EGEN
Sbjct: 67 ADFTGKYNNWDRVDPAELFLAPIEKKEAIPKLHMPKMLSIEAEGSDAVVLWLDCDKEGEN 126
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
ICFEVI + ++ RA+FSS+TEKDI AM LV PN NEAL+VDARQ +DL+
Sbjct: 127 ICFEVINAIRHSIKK-NAQILRAKFSSITEKDIKAAMNCLVSPNENEALSVDARQALDLR 185
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFISL 209
+G AFTRFQT YFQ KYGNLDS IS
Sbjct: 186 IGCAFTRFQTKYFQNKYGNLDSSLISF 212
>gi|170047094|ref|XP_001851071.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
gi|167869634|gb|EDS33017.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
Length = 855
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 141/207 (68%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS GK +RK S VHE+ G F G K+TSV GH+ L
Sbjct: 5 LMVAEKPSLAQSLAQILSNGKCSSRKGSNNACSVHEWVGNFHGQQTRFKMTSVCGHIMGL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+F Y W+ +P DLF K ES P + + L+ EA+GC +LVLWLDCD+EGENI
Sbjct: 65 EFVGKYNSWDKVDPADLFTCATEKKESTPNLRMPAFLSHEAKGCDYLVLWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEV+ + + + R +RA+FS++TEKDI AM NL++PN NEA +VDARQE+DL
Sbjct: 125 CFEVMASVANTIPNVYSNRVTYRAKFSAITEKDIKYAMENLIQPNENEAKSVDARQELDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKY +LD+ IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYADLDASLIS 211
>gi|291227018|ref|XP_002733487.1| PREDICTED: topoisomerase (DNA) III beta-like [Saccoglossus
kowalevskii]
Length = 3134
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 148/209 (70%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKP +A S+A +LS G+L +RK + VHE+ G F G A K+TSV GHV
Sbjct: 4 VFMVAEKPQLAHSLAKILSNGQLNSRKGFNGACSVHEYTGKFQGEPARFKMTSVCGHVMG 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF +Y +W+ +P +LF APV + E+ K+ + L+ E++GC +L+LWLDCD+EGEN
Sbjct: 64 LDFDGSYNNWDKVDPAELFSAPVRRIEAQEKLRMPAFLSTESKGCDYLILWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ICFEVI+ +N + V RA+FS++T+KDI AM LVEP++N+AL+VDARQ++
Sbjct: 124 ICFEVIDFVQPVMNRPYGREQTVFRAKFSAITDKDIKAAMNKLVEPDKNQALSVDARQQL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTR+QT +FQGKY +LDS IS
Sbjct: 184 DLRIGCAFTRYQTKFFQGKYADLDSTLIS 212
>gi|393909566|gb|EFO21893.2| DNA topoisomerase III beta-1 [Loa loa]
Length = 859
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 6/215 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAPL V+MVAEKP +A SIA +L+ GK+ RK V E+ G F G A KVTS
Sbjct: 1 MAPLTVMMVAEKPMLAESIAKILADGKVEKRKGWNNVCSVSEYCGQFQGQSALFKVTSTC 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDFP +W +P+ LF + K E+NPK+ + +L EA+GC LVLWLDCD
Sbjct: 61 GHIMSLDFPSKMNNWEKVDPVQLFSSSTVKREANPKMRMNEYLASEAKGCDFLVLWLDCD 120
Query: 118 REGENICFEVIECT---GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
+EGENICFE + Q+ R RA FS++T KDI AM NL PN NE+L+VD
Sbjct: 121 KEGENICFEPLSTLILGSIQMGGGRGGEGRAHFSAITAKDIKSAMRNLGRPNINESLSVD 180
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
ARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 181 ARQELDLRIGCAFTRFQTQYFQGKYGNLDSTTISF 215
>gi|312079442|ref|XP_003142175.1| DNA topoisomerase III beta-1 [Loa loa]
Length = 871
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 6/215 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAPL V+MVAEKP +A SIA +L+ GK+ RK V E+ G F G A KVTS
Sbjct: 1 MAPLTVMMVAEKPMLAESIAKILADGKVEKRKGWNNVCSVSEYCGQFQGQSALFKVTSTC 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDFP +W +P+ LF + K E+NPK+ + +L EA+GC LVLWLDCD
Sbjct: 61 GHIMSLDFPSKMNNWEKVDPVQLFSSSTVKREANPKMRMNEYLASEAKGCDFLVLWLDCD 120
Query: 118 REGENICFEVIECT---GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
+EGENICFE + Q+ R RA FS++T KDI AM NL PN NE+L+VD
Sbjct: 121 KEGENICFEPLSTLILGSIQMGGGRGGEGRAHFSAITAKDIKSAMRNLGRPNINESLSVD 180
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
ARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 181 ARQELDLRIGCAFTRFQTQYFQGKYGNLDSTTISF 215
>gi|7510001|pir||T31599 hypothetical protein Y48C3A.q - Caenorhabditis elegans
Length = 646
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKP +A SIA +LS G+ RK V E+DG F G A KVTS
Sbjct: 1 MAPT-VLMVAEKPLLADSIANLLSNGQAKKRKGWNGVCSVSEYDGQFNGRAARFKVTSTC 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GHV LDFPP + +W +P +L+ AP + E+NPK+ + L EA+ LVLWLDCD
Sbjct: 60 GHVMSLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCD 119
Query: 118 REGENICFEVIE---CTGFQ-VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+EGENICFEVI+ C F+ D V+RA FS++TEKDI AM NL P++N + +V
Sbjct: 120 KEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSV 179
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DARQE+DL++G +FTRFQT +FQGKYG+LDS IS
Sbjct: 180 DARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVIS 214
>gi|392892249|ref|NP_001254381.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
gi|371571205|emb|CCF23416.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
Length = 869
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 144/215 (66%), Gaps = 8/215 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKP +A SIA +LS G+ RK V E+DG F G A KVTS
Sbjct: 1 MAPT-VLMVAEKPLLADSIANLLSNGQAKKRKGWNGVCSVSEYDGQFNGRAARFKVTSTC 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GHV LDFPP + +W +P +L+ AP + E+NPK+ + L EA+ LVLWLDCD
Sbjct: 60 GHVMSLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCD 119
Query: 118 REGENICFEVIE---CTGFQ-VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+EGENICFEVI+ C F+ D V+RA FS++TEKDI AM NL P++N + +V
Sbjct: 120 KEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSV 179
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DARQE+DL++G +FTRFQT +FQGKYG+LDS IS
Sbjct: 180 DARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVIS 214
>gi|308480547|ref|XP_003102480.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
gi|308261212|gb|EFP05165.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
Length = 867
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 142/212 (66%), Gaps = 7/212 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
L VLMVAEKP +A SIA +LS G+ RK V E+DG F G +A KVTS GHV
Sbjct: 3 LTVLMVAEKPMLADSIAHLLSNGQARKRKGWNGVCSVSEYDGQFNGKNAKFKVTSTCGHV 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDFP + +W +P +L+ AP K E+NPK+ + L EA+ +LVLWLDCD+EG
Sbjct: 63 MSLDFPAKFNNWERVDPAELYSAPAVKIEANPKMKMNEFLASEAKNADYLVLWLDCDKEG 122
Query: 121 ENICFEVIECTGFQV----NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
ENICFEV++ + D V+RA FS++TEKDI AM NL P++N AL+VDAR
Sbjct: 123 ENICFEVVDAVKSAMFKNRPDYMSDVYRAHFSAITEKDIKAAMKNLSRPDQNMALSVDAR 182
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
QE+DL++G +FTRFQT +FQGKYG+LDS IS
Sbjct: 183 QELDLRIGCSFTRFQTKFFQGKYGDLDSNVIS 214
>gi|443731127|gb|ELU16364.1| hypothetical protein CAPTEDRAFT_182010 [Capitella teleta]
Length = 856
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 143/208 (68%), Gaps = 8/208 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMF--LGSHAYIKVTSVVGHV 60
+MVAEKPS+A S+A +LSGG++ +RK S +HEF G F G K TSV GHV
Sbjct: 4 AIMVAEKPSLAQSLAKILSGGQMSSRKGSNGACSIHEFTGRFPPTGETVRFKFTSVCGHV 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF + +W+ +P++LF AP K E+ K+ + + L +EARG +LVLWLDCD+EG
Sbjct: 64 LSLDFLGKFNNWDRVDPVELFDAPTQKKETTEKLRMPQFLEKEARGADYLVLWLDCDKEG 123
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEVI+ +N R + RA FS++T+ D+ KA L PN NEA++VDARQE+D
Sbjct: 124 ENICFEVIDSVKHSMN---RSIFRAHFSAITDTDVKKAFNTLGVPNENEAMSVDARQELD 180
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G AFTR+QT +FQGKYG+LDS IS
Sbjct: 181 LRIGCAFTRYQTKFFQGKYGDLDSTLIS 208
>gi|303285318|ref|XP_003061949.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456360|gb|EEH53661.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 862
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 144/208 (69%), Gaps = 6/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VL VAEKPS+A SIA LS G TR+ +VHEF ++ G KVT+V GHV +DF
Sbjct: 4 VLCVAEKPSLAASIAGFLSDGTHKTRRGGQDVHEFVRVYDGQRCDFKVTAVCGHVLSIDF 63
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P YQDW+ +P LF APV K E++P + HL QEA+G HLVLWLDCDREGENIC+
Sbjct: 64 PDKYQDWDV-DPGALFDAPVVKKEASPGARVVSHLEQEAKGATHLVLWLDCDREGENICY 122
Query: 126 EVIECTGFQVND---ARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
EV++ ++ A R V RA+FS+V+++ I +AM L PNR+EA+AVDARQE+D
Sbjct: 123 EVVDACVPRMRPPPGAARDDYVKRAKFSAVSKESIERAMATLGTPNRHEAMAVDARQELD 182
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
LK+GVAFTRFQT YF+GKY LD+ +S
Sbjct: 183 LKLGVAFTRFQTRYFRGKYAALDASVVS 210
>gi|328697671|ref|XP_003240406.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 853
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 143/208 (68%), Gaps = 5/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
LMVAEKPS+A S+A++LS G+ +RK+ + VHE+ G G K+TSV GHV
Sbjct: 4 ALMVAEKPSLASSLASILSNGRSNSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF + +W+ +P +LF P K E++PK+ I L EARG L+LWLDCD+EGEN
Sbjct: 64 LDFNSKFNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGEN 123
Query: 123 ICFEVIEC--TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEVI+ + + + ++ RA+FS++T KDI AM L PNRNEA++VDARQE+D
Sbjct: 124 ICFEVIDAVKSSMKRSGDVNRIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G +FTRFQT YFQGKYG+LDS IS
Sbjct: 184 LRIGCSFTRFQTKYFQGKYGDLDSSLIS 211
>gi|193591899|ref|XP_001951574.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 854
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 143/208 (68%), Gaps = 5/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
LMVAEKPS+A S+A++LS G+ +RK+ + VHE+ G G K+TSV GHV
Sbjct: 4 ALMVAEKPSLASSLASILSNGRSNSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF + +W+ +P +LF P K E++PK+ I L EARG L+LWLDCD+EGEN
Sbjct: 64 LDFNSKFNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGEN 123
Query: 123 ICFEVIEC--TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEVI+ + + + ++ RA+FS++T KDI AM L PNRNEA++VDARQE+D
Sbjct: 124 ICFEVIDAVKSSMKRSGDVNRIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G +FTRFQT YFQGKYG+LDS IS
Sbjct: 184 LRIGCSFTRFQTKYFQGKYGDLDSSLIS 211
>gi|383857261|ref|XP_003704123.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Megachile rotundata]
Length = 851
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 141/210 (67%), Gaps = 9/210 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
LMVAEKPS+A S+A +LS G+ +RK S VHE+ G F K+TSV GHV
Sbjct: 4 ALMVAEKPSLAASLANILSNGRCTSRKGLNGSCSVHEWVGQFRSETVNFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+ +P +LF P K E+ PK+ I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPYFLAKEGAHCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARR----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ICFEVI +N RR + RARFS++TEKDI A+ NL++PN NEA +VDARQE
Sbjct: 124 ICFEVIYAVQQGMN--RRLNPNDIWRARFSAITEKDIKSALANLIKPNENEAKSVDARQE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT +FQGKYG+LD+ IS
Sbjct: 182 LDLRIGCAFTRFQTKFFQGKYGDLDASLIS 211
>gi|312375379|gb|EFR22766.1| hypothetical protein AND_14242 [Anopheles darlingi]
Length = 752
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 140/207 (67%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS GK +RK S VHE+ G F G K+TSV GH+ L
Sbjct: 5 LMVAEKPSLAASLAGILSNGKCSSRKGSNNACSVHEWTGQFRGETVRFKMTSVCGHIMGL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+F Y W+ +P +LF P K E+ + + L QEA+GC +L+LWLDCD+EGENI
Sbjct: 65 EFVGKYNSWDRVDPAELFACPTEKKEATASLRMPAFLAQEAKGCDYLILWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEV+ +++ + R RA+FS++T+KDI AM NL+ PN NEA +VDARQE+DL
Sbjct: 125 CFEVMSAVSGSIHNVHSNRVTFRAKFSAITDKDIKYAMDNLIHPNENEAKSVDARQELDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKY +LD+ IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYADLDASLIS 211
>gi|307184245|gb|EFN70718.1| DNA topoisomerase 3-beta-1 [Camponotus floridanus]
Length = 851
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 139/211 (65%), Gaps = 11/211 (5%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
LMVAEKPS+A S+A +LS G+ TRK S VHE+ G F K+TSV GHV
Sbjct: 4 ALMVAEKPSLAASLANILSNGRCSTRKGLNGSCSVHEWVGQFKSETVNFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+ +P +LF P K E+ PK+ I L +E C +L+LWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPYFLAKEGSHCDYLILWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
ICFEVI RK+H RARFS++TEKDI A+ NL++PN NEA +VDARQ
Sbjct: 124 ICFEVINAVQ---QGMHRKLHINDIWRARFSAITEKDIKSALSNLIKPNENEAKSVDARQ 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR+QT +FQGKYG+LD IS
Sbjct: 181 ELDLRIGCAFTRYQTKFFQGKYGDLDVSLIS 211
>gi|156551898|ref|XP_001606777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Nasonia vitripennis]
Length = 852
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFR 62
MVAEKPS+A S+A +LS G+ TRK S VHE+ G F K+TSV GHV
Sbjct: 4 AFMVAEKPSLAASLANILSNGRCTTRKGSNGSCSVHEWLGQFRSETVNFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y +W+ +P +LF P K E+ PK+ I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPSFLAKEGGYCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARR----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ICFEVI+ Q RR + RA+FS++T+KDI A+ NL +PN NEA +VDARQE
Sbjct: 124 ICFEVIQ--AVQQGSTRRLNPNDIWRAKFSAITDKDIKAALANLAKPNENEARSVDARQE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQT +FQGKYG+LD+ IS
Sbjct: 182 LDLRIGCAFTRFQTKFFQGKYGDLDASLIS 211
>gi|398018216|ref|XP_003862289.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322500518|emb|CBZ35595.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 867
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSNGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ ++ LF AP+ +++ KV RHL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTDEEQLFTAPITWKDTSGKVS--RHLEHEAQGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIYN-HHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ IS
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVIS 204
>gi|300175415|emb|CBK20726.2| unnamed protein product [Blastocystis hominis]
Length = 891
Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/206 (54%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPSIA S+A +LS G T+ +H FDG FLG KVTSVVGHVF LDF
Sbjct: 6 VLMVAEKPSIAGSVANILSKGTHTTKTGKLPIHIFDGEFLGKQVTFKVTSVVGHVFNLDF 65
Query: 66 PPAYQDWNASNPLDLFQA-PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P YQ+W ++ LDLF A +HK S +H HL ++VLWLDCD EGENIC
Sbjct: 66 APEYQNWEKTDCLDLFSAKTIHKEASGGVIH---HLRSVGANVDYVVLWLDCDNEGENIC 122
Query: 125 FEVIECTGFQVNDAR--RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
FEV+ C + + R ++++RA +S++T DI KAM L +PN NEA AVDARQE+DLK
Sbjct: 123 FEVLNCVKPVMKNWRETKRIYRAYYSAITAPDIHKAMRTLKDPNENEAHAVDARQELDLK 182
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
VGVAF+RFQT +F+ KY +LDS IS
Sbjct: 183 VGVAFSRFQTQFFRNKYSDLDSSVIS 208
>gi|242006813|ref|XP_002424239.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
gi|212507608|gb|EEB11501.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
Length = 852
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 141/208 (67%), Gaps = 6/208 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS GK TRK + VHE+ G F ++TSV GH+ L
Sbjct: 5 LMVAEKPSLAASLANILSNGKSSTRKGFNGACSVHEWVGTFRMEPVTFRMTSVCGHIMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+F Y +W+ +P++L P K E+N K+ + L+QEARGC +L+LWLDCD+EGENI
Sbjct: 65 EFSGKYNNWDKVDPVELLSCPTEKKEANSKLKMPYFLSQEARGCDYLILWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVN-DARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
CFEVI + D RR V+RA+FS++TEKDI A NL PN NEA +VDARQE+D
Sbjct: 125 CFEVIHAVQHSLKADVRRGDVVYRAKFSAITEKDIKAAFANLGVPNENEARSVDARQELD 184
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L+VG AFTRFQT +F KYG+LD+ IS
Sbjct: 185 LRVGCAFTRFQTKFFHDKYGDLDAALIS 212
>gi|350424370|ref|XP_003493773.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus impatiens]
Length = 851
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ +RK S +HE+ G F + K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSNGRCTSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF P K E+ P++ I L +E C +L+LWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVNDARR----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
CFEVI +N RR + RARFS++TEKDI A+ NLV PN NEA +VDARQEI
Sbjct: 125 CFEVIHAVQQGMN--RRLNPNDIWRARFSAITEKDIKAALANLVRPNENEAKSVDARQEI 182
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQGKYG+LD IS
Sbjct: 183 DLRIGCAFTRFQTKFFQGKYGDLDVSLIS 211
>gi|340508777|gb|EGR34411.1| hypothetical protein IMG5_012580 [Ichthyophthirius multifiliis]
Length = 789
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 106/211 (50%), Positives = 147/211 (69%), Gaps = 7/211 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVLMV EKPSIA ++A LS G R+ ++ VHEF G +A+I++TSV GHV+
Sbjct: 55 KVLMVTEKPSIAKTLAEALSDGSSRQRQGYSKYLPVHEFQGNIFNQNAFIRITSVAGHVY 114
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ ++P++LF+A K ESNP+ + +HL QE++ C +LVLWLD DREGE
Sbjct: 115 SLDFTRDYSNWDRTDPIELFKAKTQKIESNPQQKVIKHLEQESKDCSYLVLWLDNDREGE 174
Query: 122 NICFEV---IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVE-PNRNEALAVDARQ 177
NICFEV E + N + + RA+FSS+T+KD+ +A +++ PN N+ LAVDARQ
Sbjct: 175 NICFEVKRICEPQMIKENTNKLQTLRAKFSSLTKKDLKEAYQKIIDPPNLNDCLAVDARQ 234
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
IDLKVGVAF+RFQTTYF+ KY +L+ + I+
Sbjct: 235 IIDLKVGVAFSRFQTTYFRKKYPDLNEKMIT 265
>gi|340722711|ref|XP_003399746.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus terrestris]
Length = 851
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ +RK S +HE+ G F + K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSNGRCTSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF P K E+ P++ I L +E C +L+LWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGENI 124
Query: 124 CFEVIECT--GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEVI G + RARFS++TEKDI A+ NLV PN NEA +VDARQEIDL
Sbjct: 125 CFEVIHAVQQGMNKRLNPNDIWRARFSAITEKDIKAALANLVRPNENEAKSVDARQEIDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKYG+LD IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYGDLDVSLIS 211
>gi|341892314|gb|EGT48249.1| hypothetical protein CAEBREN_32330 [Caenorhabditis brenneri]
Length = 1276
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAP VLMVAEKP +A SIA +LS G+ RK V E+DG F G +A KVTS
Sbjct: 545 MAPT-VLMVAEKPMLADSIAQLLSNGQARKRKGWNNVCSVSEYDGQFNGRNAKFKVTSTC 603
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GHV LDFP + +W +P +L+ AP K E+NPK+ + L EA+ +LVLWLDCD
Sbjct: 604 GHVMSLDFPAKFNNWERVDPAELYSAPAVKIEANPKMKMNDFLASEAKTADYLVLWLDCD 663
Query: 118 REGENICFEV----IECTGFQVN-DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
+EGENICFEV ++ F+ D V+RA FS++TEKDI AM +L P++N AL+
Sbjct: 664 KEGENICFEVVIDAVKSAMFKNRPDFMNDVYRAHFSAITEKDIKAAMKSLGRPDQNMALS 723
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
VDARQE+DL++G +FTRFQT +FQGKYG+LDS IS
Sbjct: 724 VDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVIS 759
>gi|194762590|ref|XP_001963417.1| GF20299 [Drosophila ananassae]
gi|190629076|gb|EDV44493.1| GF20299 [Drosophila ananassae]
Length = 878
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 143/209 (68%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAAILSNGRCTAKRGTGNGCSTHEWTGTFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P++LF P K E+NPK H+ L EA+GC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYNSWDKVDPVELFSCPTEKKETNPKQHMRTFLAHEAKGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +++ +R+ +RA FS++TEKDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQNVIHNVYSRQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|157871822|ref|XP_001684460.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68127529|emb|CAJ05541.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 866
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 142/203 (69%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSNGSCSRRTRALPVYEYPGNFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ ++ LF AP+ +++ KV HL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTDEEQLFTAPITWKDTSGKV--THHLEHEAQGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I +A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIY-SHHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ IS
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVIS 204
>gi|260101066|gb|ACX31684.1| DNA topoisomerase III beta [Leishmania donovani]
Length = 866
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 142/203 (69%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSNGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ ++ LF AP+ +++ KV HL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTDEEQLFTAPITWKDTSGKV--THHLEHEAQGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I +A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIYN-HHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ IS
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVIS 204
>gi|449477313|ref|XP_002199057.2| PREDICTED: DNA topoisomerase 3-beta-1 [Taeniopygia guttata]
Length = 1002
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 7/193 (3%)
Query: 24 SGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDL 80
S G + +RK + VHE+ G F+G A+ K+TSV GHV LDF Y W+ +P +L
Sbjct: 162 SRGNMSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAEL 221
Query: 81 F-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDAR 139
F +AP K E+NPK+ + + L E RGC +VLWLDCD+EGENICFEV++ +N R
Sbjct: 222 FSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNKPR 281
Query: 140 ---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
R ++RA+FSS+T+ DI AM +L EPNRNEAL+VDARQE+DL++G AFTRFQT YFQ
Sbjct: 282 GTERTIYRAKFSSITDTDICNAMNHLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQ 341
Query: 197 GKYGNLDSRFISL 209
GKYGNLDS IS
Sbjct: 342 GKYGNLDSSLISF 354
>gi|71756135|ref|XP_828982.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834368|gb|EAN79870.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583730|gb|ABP01567.1| topoisomerase IIIbeta [Trypanosoma brucei brucei]
gi|261334912|emb|CBH17906.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 841
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 139/203 (68%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPSIA SIA LS G+ + V E+DG F G+ A+ +VTS GH+F DF
Sbjct: 5 VLMVAEKPSIAESIAHHLSNGRTAKHSRALPVFEYDGYFQGAPAHFRVTSTTGHIFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P YQ W+ ++ LF APV E + +V RHL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TPQYQSWDRTDEESLFGAPVVWREESGRVS--RHLEHEAKGCATLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++D R + RA+FS++T + I +A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVSRSIHDIR-CIWRAKFSAITREAITEAFVNLGKPNKNLSDAVSCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
FTR+QT YFQGKYGNLD+ +S
Sbjct: 182 VFTRYQTKYFQGKYGNLDASVVS 204
>gi|407420057|gb|EKF38435.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 851
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 138/203 (67%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIA LS G+ R + V+E+ G F + AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIAFHLSNGQAAKRSRALPVYEYSGHFFNTPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Q+W+ + DLF APV + KV RHL EA GC LVLWLDCDREGENICF
Sbjct: 65 TPQHQNWDRTEEEDLFSAPVVWKDEAGKVS--RHLAHEAEGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ + D R + RA+FS++T ++I A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRRSIYDMR-DIWRAKFSAITREEITHAFLNLGKPNKNVSDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTR+QT YFQGKYG+LDS +S
Sbjct: 182 AFTRYQTKYFQGKYGDLDSSVVS 204
>gi|256052775|ref|XP_002569927.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
gi|360043203|emb|CCD78615.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1159
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 142/207 (68%), Gaps = 4/207 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A SIA LS + +R+ + +HE+ G F+ K+TSV GHV
Sbjct: 318 VFMVAEKPSLAESIAKSLSNKRNSSRRGFNGACSIHEWTGQFMSEQVRFKMTSVCGHVMN 377
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+DF Y W+ +P +LF AP+ K E+NPK+ + L EA+ G L+LWLDCD+EGEN
Sbjct: 378 VDFLSRYNSWDKVDPAELFVAPIEKKEANPKLKMVDFLRHEAKNAGILILWLDCDKEGEN 437
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
ICFEVI C V +++ RA FS+VT++++ AM NL EPN++EAL+VDARQE+DL+
Sbjct: 438 ICFEVINCV-HSVMIHPKRILRAHFSAVTDQELHGAMKNLREPNKHEALSVDARQELDLR 496
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFISL 209
+G AFTRFQT +FQGKYG+L+S +S
Sbjct: 497 IGCAFTRFQTKFFQGKYGDLNSNLVSF 523
>gi|327280846|ref|XP_003225162.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Anolis
carolinensis]
Length = 851
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 143/211 (67%), Gaps = 18/211 (8%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + +RK + VHE+ G F+G ++ K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSRKGLNGACSVHEYTGSFIGQSSHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R R V+RA+FSS+T+ DI AM +L EPN NEAL+VDARQE
Sbjct: 124 NICFEVLDAIVPIMNKPRGSERVVYRAKFSSITDTDICNAMNHLGEPNHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
FQT YFQGKYGNLDS IS
Sbjct: 184 -----------FQTKYFQGKYGNLDSSLISF 203
>gi|380025214|ref|XP_003696372.1| PREDICTED: DNA topoisomerase 3-beta-1 [Apis florea]
Length = 851
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ +RK S VHE+ G F K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSNGRCTSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF P K E+ P++ I L +E C +LVLWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGENI 124
Query: 124 CFEVIECT--GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEVI G + RARFS++TEKDI A+ NL++PN NEA +VDARQE+DL
Sbjct: 125 CFEVIYAVQQGMNKRLNPNDIWRARFSAITEKDIKSALVNLIKPNENEAKSVDARQELDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKYG+LD IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYGDLDVSLIS 211
>gi|66509929|ref|XP_625165.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Apis
mellifera]
Length = 851
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ +RK S VHE+ G F K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSNGRCTSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF P K E+ P++ I L +E C +LVLWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGENI 124
Query: 124 CFEVIECT--GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEVI G + RARFS++TEKDI A+ NL++PN NEA +VDARQE+DL
Sbjct: 125 CFEVIYAVQQGMNKRLNPNDIWRARFSAITEKDIKSALVNLIKPNENEAKSVDARQELDL 184
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTRFQT +FQGKYG+LD IS
Sbjct: 185 RIGCAFTRFQTKFFQGKYGDLDVSLIS 211
>gi|195469926|ref|XP_002099887.1| GE16470 [Drosophila yakuba]
gi|194187411|gb|EDX00995.1| GE16470 [Drosophila yakuba]
Length = 878
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 143/209 (68%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P++LF P K E+NPK H+ L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYNSWDKVDPVELFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +++ +++ +RA FS++TEKDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQHVIHNVYSKQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|401425068|ref|XP_003877019.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493263|emb|CBZ28548.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 866
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 141/203 (69%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSNGSCSRRTRALPVYEYMGNFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ ++ LF AP+ +++ KV HL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTDEEQLFTAPITWKDTSGKV--THHLEHEAQGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIYN-HNNIFRAHFSAITAEEIFHAFRNLGKPNKNVSDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ IS
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVIS 204
>gi|146092141|ref|XP_001470217.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134085011|emb|CAM69411.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 867
Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 141/203 (69%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSNGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ ++ LF AP+ +++ KV HL E++GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTDEEQLFTAPITWKDTSGKVS--HHLEHESQGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIYN-HHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ IS
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVIS 204
>gi|291406914|ref|XP_002719771.1| PREDICTED: topoisomerase (DNA) III beta [Oryctolagus cuniculus]
Length = 863
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRK----ASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
VLMVAEKPS+A SIA +LS G + + K A G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACFSARVPLDTSAGQPVRFKMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EG
Sbjct: 64 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 123
Query: 121 ENICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
ENICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQ
Sbjct: 124 ENICFEVLDAVVPVMNKAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDARQ 183
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
E+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 ELDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 215
>gi|194896190|ref|XP_001978430.1| GG17682 [Drosophila erecta]
gi|190650079|gb|EDV47357.1| GG17682 [Drosophila erecta]
Length = 878
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF P K E+NPK H+ L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYNSWDKVDPVQLFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +++ +++ +RA FS++TEKDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQHVIHNVYSKQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|71664077|ref|XP_819023.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70884306|gb|EAN97172.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/203 (54%), Positives = 138/203 (67%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIA LS G+ R + V+E+ G F + AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIAFHLSNGQAAKRSRALPVYEYSGYFFNTPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Q W+ + DLF APV + KV RHL EA GC LVLWLDCDREGENICF
Sbjct: 65 TPQHQSWDRTEEEDLFSAPVVWKDEAGKVS--RHLAHEAEGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++D R + RA+FS++T ++I A +L +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRRSIHDMR-DIWRAKFSAITREEITHAFLHLGKPNKNVSDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTR+QT YFQGKYG+LDS +S
Sbjct: 182 AFTRYQTKYFQGKYGDLDSSVVS 204
>gi|195164959|ref|XP_002023313.1| GL20281 [Drosophila persimilis]
gi|198468405|ref|XP_001354695.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
gi|194105418|gb|EDW27461.1| GL20281 [Drosophila persimilis]
gi|198146398|gb|EAL31750.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
Length = 875
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+AT+LS G+ ++ + HE+ G F + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLATILSNGRCTVKRGTGNGCSTHEWTGTFRNEGTVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF P K E++PK H+ L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYNSWDKVDPVQLFGCPTEKKETSPKQHMRTFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +++ +++ +RA FS++T+KDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQGVISNVYSKQVTYRAHFSAITDKDIKGAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|325189814|emb|CCA24294.1| PREDICTED: DNA topoisomerase 3beta1like isoform 1 putative [Albugo
laibachii Nc14]
Length = 928
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLY-TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
+LMVAEKPSIA SIA LS + Y TR T + E + F K+TSV GH++ D
Sbjct: 4 ILMVAEKPSIAASIAKALSDDRAYDTRSGKTPIFELNSSFKSVPCLYKITSVTGHMYSCD 63
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
FP AY +W+ +P LFQA K + +H + L +EARG L+LWLDCDREGENIC
Sbjct: 64 FPSAYSNWDTVDPESLFQASTEKKLESKGLH--QQLQKEARGADTLILWLDCDREGENIC 121
Query: 125 FEVIECTGFQVNDA------RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
FEVIE ++ +A + RA+FS+VT+KDI AM LV PN +E+ AVDARQE
Sbjct: 122 FEVIETVRDRMQNAASLKFKEPLILRAKFSAVTKKDIQHAMETLVAPNIHESWAVDARQE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DLKVGVAF+RFQT YFQG+YG+LDS +S
Sbjct: 182 LDLKVGVAFSRFQTRYFQGRYGDLDSNLVS 211
>gi|332027377|gb|EGI67460.1| DNA topoisomerase 3-beta-1 [Acromyrmex echinatior]
Length = 848
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ TRK S VHE+ G F K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSSGRCSTRKGLNGSCSVHEWVGQFRSETVNFKMTSVCGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF K E+ PK+ I L +E C +LVLWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCSTEKKEAVPKLKIPYFLAKEGAHCDYLVLWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEVI RK+H RFS++TEKDI A+ NL++PN NEA +VDARQE+DL
Sbjct: 125 CFEVINAVQ---QGMHRKLHINATRFSAITEKDIKSALANLIKPNENEAKSVDARQELDL 181
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G AFTR+QT +FQGKYG+LD IS
Sbjct: 182 RIGCAFTRYQTKFFQGKYGDLDVSLIS 208
>gi|195133228|ref|XP_002011041.1| GI16324 [Drosophila mojavensis]
gi|193907016|gb|EDW05883.1| GI16324 [Drosophila mojavensis]
Length = 858
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 140/208 (67%), Gaps = 5/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST--EVHEFDGMFLG-SHAYIKVTSVVGHVFR 62
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGNNGCSTHEWTGPFRNEGNVHFRMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y W+ +P+ LF P K E NPK + L EARGC +LVLWLDCD+EGEN
Sbjct: 64 LDFISKYTSWDKVDPVQLFDCPTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEV++ +++ +RA FS++T+KDI AM +L PN+NEA +VDARQE+D
Sbjct: 124 ICFEVMDAVQHVIHNVYSTFVTYRAHFSAITDKDIKGAMESLGHPNKNEAKSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 184 LRIGCAFTRFQTKFFQGRYGDLDSSLIS 211
>gi|195041892|ref|XP_001991334.1| GH12112 [Drosophila grimshawi]
gi|193901092|gb|EDV99958.1| GH12112 [Drosophila grimshawi]
Length = 862
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 140/209 (66%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ K S +E+ G F + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAAILSNGRCTAAKRGINSCSTYEWSGNFRNEGTVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P++LF P K E NPK + L+QEARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYTSWDKVDPVELFGCPTEKKECNPKQQMRTFLSQEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +++ + +RA FS++T+KDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQHVIHNVYSHNVTYRAHFSAITDKDIKGAMDKLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQGRYGDLDSSLIS 212
>gi|307203099|gb|EFN82279.1| DNA topoisomerase 3-beta-1 [Harpegnathos saltator]
Length = 851
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 138/210 (65%), Gaps = 11/210 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKPS+A S+A +LS G+ TRK + VHE+ F K+TSV GHV L
Sbjct: 5 LMVAEKPSLAASLANILSNGRCVTRKGLNGTCPVHEWVDQFKYETVTFKMTSVCGHVMTL 64
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF Y +W+ +P +LF P K E+ PK+ I L +E C +L+LWLDCD+EGENI
Sbjct: 65 DFIGKYNNWDKVDPAELFSCPTEKKEALPKLKIPYILAKEGSHCDYLILWLDCDKEGENI 124
Query: 124 CFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
CFEVI RK+H RARFS++TEKDI A+ NL++PN NEA +VDARQE
Sbjct: 125 CFEVINAVQ---QGMHRKLHPNDIWRARFSAITEKDIKSALENLIKPNENEAKSVDARQE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTR+QT +FQGKYG+LD IS
Sbjct: 182 LDLRIGCAFTRYQTKFFQGKYGDLDVSLIS 211
>gi|4235475|gb|AAD13219.1| topoisomerase III [Drosophila melanogaster]
Length = 875
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF K E+NPK ++ + L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +N+ + + +RA FS++TEKDI KAM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|195448334|ref|XP_002071612.1| GK10076 [Drosophila willistoni]
gi|194167697|gb|EDW82598.1| GK10076 [Drosophila willistoni]
Length = 884
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 140/209 (66%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLANILSNGRCTAKRGTNNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P++LF P K E+NPK H+ L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFISKYNSWDKVDPVELFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ + + + +RA FS++TEKDI AM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVQHVIRNVYTPQVTYRAHFSAITEKDIKGAMEKLGFPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|24640096|ref|NP_511059.2| topoisomerase 3beta [Drosophila melanogaster]
gi|14286175|sp|O96651.2|TOP3B_DROME RecName: Full=DNA topoisomerase 3-beta; AltName: Full=DNA
topoisomerase III beta
gi|7290697|gb|AAF46144.1| topoisomerase 3beta [Drosophila melanogaster]
gi|54650844|gb|AAV37001.1| LD10035p [Drosophila melanogaster]
gi|220950396|gb|ACL87741.1| Top3beta-PA [synthetic construct]
Length = 875
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF K E+NPK ++ + L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +N+ + + +RA FS++TEKDI KAM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>gi|170285121|gb|AAI61096.1| LOC100145467 protein [Xenopus (Silurana) tropicalis]
Length = 482
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 138/211 (65%), Gaps = 20/211 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F+G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSASSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+ + + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A R V+RA+FSS+T+ DIL AM L EPN+NEAL+VDA
Sbjct: 124 NICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDA--- 180
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
RFQT YFQGKYGNLDS IS
Sbjct: 181 ----------RFQTKYFQGKYGNLDSSLISF 201
>gi|407853208|gb|EKG06290.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 137/203 (67%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIA LS G+ R + V+E+ G F + AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIAFHLSNGQAAKRSRALPVYEYSGYFFNTPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Q W+ + DLF APV + KV RHL EA C LVLWLDCDREGENICF
Sbjct: 65 TPQHQSWDRTEEEDLFSAPVVWKDEAGKVS--RHLAHEAEECDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++D R + RA+FS++T ++I A +L +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRRSIHDMR-DIWRAKFSAITREEITHAFLHLGKPNKNVSDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTR+QT YFQGKYG+LDS +S
Sbjct: 182 AFTRYQTKYFQGKYGDLDSSVVS 204
>gi|195399043|ref|XP_002058130.1| GJ15664 [Drosophila virilis]
gi|194150554|gb|EDW66238.1| GJ15664 [Drosophila virilis]
Length = 858
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 140/208 (67%), Gaps = 5/208 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST--EVHEFDGMFLGSHA-YIKVTSVVGHVFR 62
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGNNGCSTHEWTGHFRNEGSVHFRMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF Y W+ +P++LF K E NPK + L EARGC +LVLWLDCD+EGEN
Sbjct: 64 LDFTSKYTSWDKVDPVELFGCTTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKEGEN 123
Query: 123 ICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEV++ +++ +R +RA FS++T+KDI AM L PN NEA +VDARQE+D
Sbjct: 124 ICFEVMDAVQHVIHNVYSRNVTYRAHFSAITDKDIKGAMETLGHPNENEAKSVDARQELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L++G AFTRFQT +FQG+YG+LDS IS
Sbjct: 184 LRIGCAFTRFQTKFFQGRYGDLDSSLIS 211
>gi|167525962|ref|XP_001747315.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774150|gb|EDQ87782.1| predicted protein [Monosiga brevicollis MX1]
Length = 803
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 134/196 (68%), Gaps = 5/196 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A S+A +LS +R + S VHE+ G F+G A K TSV+GHV
Sbjct: 6 VLMVAEKPSLAKSLAWILSNHSATSRPSRSKSCTVHEYSGDFMGQQAQFKFTSVMGHVMS 65
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF P Y +W + P +LF A K ++NPK H+ L E +G +LVLWLDCDREGEN
Sbjct: 66 LDFLPQYNNWERTPPRELFDAETEKKDANPKAHVREALRSEGKGVDYLVLWLDCDREGEN 125
Query: 123 ICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ICFEV++ +N + R V RA+FS++TEKDI AM LV PN NE+LAVDARQE+D
Sbjct: 126 ICFEVMDIVLPVMNRSVRGQTVFRAKFSAITEKDIKAAMRTLVAPNENESLAVDARQELD 185
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT +FQ
Sbjct: 186 LRMGCAFTRFQTRFFQ 201
>gi|342186003|emb|CCC95488.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 838
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 136/203 (66%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPSIA SIA LS G+ R + V E+DG F G A+ +VTS GH+F DF
Sbjct: 5 VLMVAEKPSIAESIAHHLSNGRAVRRTRALPVFEYDGHFHGGPAHFRVTSTTGHIFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Q W+ + LF APV E + +V RHL EA GC LVLWLDCDREGENICF
Sbjct: 65 TPQHQSWDRTEEEVLFGAPVVWREESGRVS--RHLAHEAEGCATLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ + D R + RA+FS++T++ I A NL +PN+N + AV RQE+DLKVGV
Sbjct: 123 EVMQVVERSIRDMR-NIWRAKFSAITQEAITYAFMNLCKPNKNLSDAVSCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
FTR+QT YFQGKYG+LD+ +S
Sbjct: 182 VFTRYQTKYFQGKYGDLDANVVS 204
>gi|307133770|ref|NP_001120391.2| topoisomerase (DNA) III beta isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 845
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 138/211 (65%), Gaps = 20/211 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F+G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSASSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y +W+ +P +LF +AP K E+NPK+ + + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A R V+RA+FSS+T+ DIL AM L EPN+NEAL+VDA
Sbjct: 124 NICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDA--- 180
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
RFQT YFQGKYGNLDS IS
Sbjct: 181 ----------RFQTKYFQGKYGNLDSSLISF 201
>gi|389601917|ref|XP_001566225.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505240|emb|CAM39725.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 866
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 139/203 (68%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIAT+LS G R + V+E+ G F+GS AY KVTS GHVF DF
Sbjct: 5 VLMVAEKPSLAESIATILSSGSCSRRTRALPVYEYMGSFMGSPAYFKVTSTTGHVFSCDF 64
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+Q+W+ + LF AP+ +++ KV HL EA+GC LVLWLDCDREGENICF
Sbjct: 65 TSQHQNWDRTEEEQLFTAPIVWKDTSEKV--THHLEHEAKGCDTLVLWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ ++ + + RA FS++T ++I A +L PN++ + AV RQE+DLKVGV
Sbjct: 123 EVMQVVRREIYN-NNSIFRAHFSAITAEEIFHAFCSLGRPNKSISDAVTCRQELDLKVGV 181
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT YFQGKYG+LD+ +S
Sbjct: 182 AFTRFQTKYFQGKYGDLDASVVS 204
>gi|326432311|gb|EGD77881.1| DNA topoisomerase [Salpingoeca sp. ATCC 50818]
Length = 855
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 144/210 (68%), Gaps = 4/210 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY---TRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEKP++A S+A +LS G TR A + E+DG+F G A+ K TSV GHV
Sbjct: 3 VNVLQVAEKPALAKSLAAILSNGSCSYGNTRTAGLPLLEYDGVFKGQKAHFKFTSVRGHV 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ FP Y +W+ ++P DLF V E++ ++ L EA+GC LVLWLDCD EG
Sbjct: 63 MEVQFPAKYNNWDRTDPGDLFTVDVEMQEADSSKNVVHALRSEAKGCDFLVLWLDCDPEG 122
Query: 121 ENICFEVIECTGFQVND-ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENICFEVI+ +N +++ RA+FS++T KDI AM +L EP++N +L+VDAR+E+
Sbjct: 123 ENICFEVIDAVRPAMNHRPGQQIFRAKFSAITAKDIKHAMQHLGEPDKNVSLSVDARREL 182
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
DL++GVAFTRFQ+ +FQGKYG+LDS+ +S
Sbjct: 183 DLRMGVAFTRFQSRFFQGKYGDLDSQVLSF 212
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula]
gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula]
Length = 1024
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 116/153 (75%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MA KVLMVAEKPSIALSIATVLS GK+ TR+ STEVHEFDG F + A KVTSV+GHV
Sbjct: 1 MALPKVLMVAEKPSIALSIATVLSHGKMNTRRGSTEVHEFDGKFRKAPARFKVTSVIGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +DFP YQDW A++PLDLFQA V K ESNPK HIC+HL+QEARGC +LVLWLDCDREG
Sbjct: 61 FSVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICKHLHQEARGCRYLVLWLDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEK 153
ENICFE EC F +D ++R S K
Sbjct: 121 ENICFEGGECLLFINSDQASYLNRCGTKSTPSK 153
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 4/98 (4%)
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
R ++ ++ IE TGF +ND V+RARFSSVTEKD+L A+ NLV PNR+EA+AVDARQ
Sbjct: 244 RPNGHVAWQFIESTGFNIND----VYRARFSSVTEKDVLNALDNLVRPNRDEAMAVDARQ 299
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLF 215
EIDLKVGVAFTRFQT++FQGKYGNLD+R ISLVF SL
Sbjct: 300 EIDLKVGVAFTRFQTSFFQGKYGNLDARVISLVFCSLL 337
>gi|281337636|gb|EFB13220.1| hypothetical protein PANDA_021957 [Ailuropoda melanoleuca]
Length = 839
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 124/181 (68%), Gaps = 4/181 (2%)
Query: 33 ASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLF-QAPVHKAESN 91
+ VHE+ G F G K+TSV GHV LDF Y W+ +P +LF QAP K E+N
Sbjct: 11 GTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEAN 70
Query: 92 PKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVND---ARRKVHRARFS 148
PK+++ + L E +GC ++VLWLDCD+EGENICFEV++ +N + V RARFS
Sbjct: 71 PKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHGGEKTVFRARFS 130
Query: 149 SVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
S+T+ DI AM L EP+ NEAL+VDARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 131 SITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLIS 190
Query: 209 L 209
Sbjct: 191 F 191
>gi|118385846|ref|XP_001026048.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89307815|gb|EAS05803.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1374
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 103/211 (48%), Positives = 139/211 (65%), Gaps = 6/211 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KV+M+AEKPSIA SIA LS + K ++ VHEF+G F G+ KVTSV GHV+
Sbjct: 536 KVVMIAEKPSIAKSIADALSNNSSKSVKGYSKYLPVHEFEGQFKGNRVLFKVTSVAGHVY 595
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y WN NP++LF A K E+NP + +HL +EA+ +L+LWLD DREGE
Sbjct: 596 SLDFQKEYDQWNKVNPINLFSAKTIKVEANPSQGVVKHLEKEAQDASYLILWLDNDREGE 655
Query: 122 NICFEVIE-CTGFQVNDAR-RKVHRARFSSVTEKDILKAMGNLVE-PNRNEALAVDARQE 178
NICFEV C F + +++ RA+FSS+T+ D+++A N+ + PN NE+ AVDARQ
Sbjct: 656 NICFEVKSICEAFMCKEQNTQQILRAKFSSLTKSDLVQAFKNVRDPPNMNESKAVDARQI 715
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
IDLK+G AFTR+QT +F+ +Y L+ IS
Sbjct: 716 IDLKIGAAFTRYQTLFFRNRYPELNENIISF 746
>gi|452823186|gb|EME30198.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 853
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR---KASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL+V EKPSIA ++A LS TR K+ VHEF G F G A IKVTSV+GHV+
Sbjct: 3 QVLIVTEKPSIAETVANALSQDSYRTRAARKSPCRVHEFRGYFRGQMANIKVTSVLGHVY 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF Y DWN +LF A V K ++ + RHL EA G +LVLWLDCDREGE
Sbjct: 63 SFDFTKEYNDWNLVEAEELFFAGVRKVVADSGSKVVRHLATEAIGVDYLVLWLDCDREGE 122
Query: 122 NICFEVIECTGFQVNDA------RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
NI FEVI C + + R V RA+FS++T KDI +AM NL + N+A AVD
Sbjct: 123 NIAFEVISCVKHSLQNVPVIYGNRANVFRAKFSALTTKDICRAMENLTYVDTNQASAVDV 182
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R EIDLKVGVAFTRFQT YF K+ +LDS+ +S
Sbjct: 183 RAEIDLKVGVAFTRFQTRYFHDKFSSLDSKLVS 215
>gi|147806211|emb|CAN67757.1| hypothetical protein VITISV_028119 [Vitis vinifera]
Length = 1226
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 105/132 (79%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
P K+LMVAEKPS ALSIA+ LS G + TR++S EVHEF+G F GS+A K TSV+ F
Sbjct: 127 PHKILMVAEKPSSALSIASTLSDGHMSTRRSSIEVHEFNGTFRGSNAQYKATSVIDMFFS 186
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+DFP YQDW +PLD FQAP+HKAE NPK HICR L+QEAR CGHLVLWLDCDREG+N
Sbjct: 187 VDFPAKYQDWTIVDPLDFFQAPIHKAEXNPKAHICRRLSQEARVCGHLVLWLDCDREGDN 246
Query: 123 ICFEVIECTGFQ 134
ICFEV+ECTGF
Sbjct: 247 ICFEVVECTGFH 258
>gi|118383692|ref|XP_001025000.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89306767|gb|EAS04755.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1386
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 108/211 (51%), Positives = 135/211 (63%), Gaps = 5/211 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VLMVAEKPSIA SIA L G TRK + V F G G A IKVTSV+GH+
Sbjct: 242 VTVLMVAEKPSIARSIAEALGGAGFTTRKGICKFSNVFTFYGHIFGKKALIKVTSVIGHI 301
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ DF YQDW +P LF A K E+NP I +HL +EA G +L+LWLD DREG
Sbjct: 302 YTSDFTQEYQDWRRVDPYKLFNATTLKKETNPNSQIIQHLQKEAMGASYLILWLDNDREG 361
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNL-VEPNRNEALAVDARQE 178
ENICFEV+ C + + +++ RA+FSS+T DI KA L + PN NE+ AVDARQ
Sbjct: 362 ENICFEVLTICKPELIKEDFQQIFRAKFSSITPIDIRKAFDELSIGPNFNESQAVDARQI 421
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
IDLKVGVAF+RFQT Y KY +L+++ I+
Sbjct: 422 IDLKVGVAFSRFQTRYLVRKYEDLNNKKITF 452
>gi|167393819|ref|XP_001740725.1| DNA topoisomerase 3-beta-1 [Entamoeba dispar SAW760]
gi|165895052|gb|EDR22857.1| DNA topoisomerase 3-beta-1, putative [Entamoeba dispar SAW760]
Length = 840
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 136/209 (65%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ +LMVAEKP +A SIA LS G + TRK S VHEF+ F G K+TSV GHV
Sbjct: 1 MTLLMVAEKPLLAESIANFLSLGPVKTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ +F A+Q+W+ +P DLF V K E+NPK HI HL EA+GC LVLWLDCDREG
Sbjct: 61 YTCEFERAFQNWSV-DPRDLFNCKVIKVEANPKTHIPSHLRNEAKGCNGLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEV+E T K++RA FSS+T+KDI +A +L +P+ A AVD RQEID
Sbjct: 120 ENICFEVMENT-VDYMTKTCKIYRALFSSITKKDITEAFNHLGQPDERLAEAVDCRQEID 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L+VGVAFTR QT + + ++ L IS
Sbjct: 179 LRVGVAFTRLQTKFLKERFPKLGDSLISF 207
>gi|308805316|ref|XP_003079970.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
gi|116058427|emb|CAL53616.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
Length = 2117
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 139/211 (65%), Gaps = 12/211 (5%)
Query: 6 VLMVAEKPSIALSIATVLS-GGKLYTRKA-STEVHEFDGMFLG---SHAYIKVTSVVGHV 60
VL VAEKPS+A IA L+ GG TRK + +VHEF G LG S A+ +VTSV GHV
Sbjct: 1589 VLCVAEKPSLAALIAGFLAPGGAFTTRKGFAGDVHEFTGRGLGTMRSRAW-RVTSVKGHV 1647
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFP +Q W + +P +LF AP K V RHL EA+G L+LWLDCDREG
Sbjct: 1648 ASVDFPERFQSWESCDPGELFAAPTVKRADGKMV---RHLESEAKGAMTLILWLDCDREG 1704
Query: 121 ENICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
ENICFEVIE + + R++ RA+FS+VT+ + AM +L NRNEALAVDARQ
Sbjct: 1705 ENICFEVIEACAPSMRTSGGGEREILRAKFSAVTKDSVENAMKSLGRANRNEALAVDARQ 1764
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DLK+GVAFTRFQT YF KY LD+R +S
Sbjct: 1765 ELDLKMGVAFTRFQTQYFLNKYDRLDARVVS 1795
>gi|146182668|ref|XP_001024996.2| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|146143729|gb|EAS04751.2| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 858
Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats.
Identities = 108/201 (53%), Positives = 136/201 (67%), Gaps = 5/201 (2%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
P++VLMVAEKPSIA +IA LS R+ + EVH F F IKVTSVVGH+F
Sbjct: 5 PVQVLMVAEKPSIARTIAQALSQQVHTQRRNNHEVHFFPSYFFQMPCLIKVTSVVGHIFS 64
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF P Y + N +P+ LF AP K S+P I +HL EA+GC LVLWLD DREGEN
Sbjct: 65 TDFSPEY-NGNDVDPIKLFDAPTIKKFSSPSSTIIQHLKNEAQGCNFLVLWLDNDREGEN 123
Query: 123 ICFEVIE-CTGF-QVNDARRK-VHRARFSSVTEKDILKAMGNLV-EPNRNEALAVDARQE 178
ICFEVI+ C F V D K + RA+FSS+T+ DI+KA L+ EP+ N++LAVDARQ
Sbjct: 124 ICFEVIQVCDSFLNVFDRNSKYIFRAKFSSITQVDIIKAYEQLIAEPDLNQSLAVDARQI 183
Query: 179 IDLKVGVAFTRFQTTYFQGKY 199
+DLK+G++F++FQT Y Q KY
Sbjct: 184 LDLKLGLSFSKFQTRYLQNKY 204
>gi|323456344|gb|EGB12211.1| hypothetical protein AURANDRAFT_19616, partial [Aureococcus
anophagefferens]
Length = 696
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 135/203 (66%), Gaps = 3/203 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
V+ VAEKPSIA +IA L+ + TR S HEF G F G+ +VTSV+GH F LDF
Sbjct: 4 VMCVAEKPSIADAIAKALAKSTVSTRGGSPRTHEFRGRFGGASCEYRVTSVLGHCFNLDF 63
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PAY+DW+ +P +L+ APV + SN V R+L + A+ C LVL+LDCDREGE I F
Sbjct: 64 APAYRDWDGCDPSELWDAPVVRVPSNGSV--LRNLRETAKDCDALVLFLDCDREGEAIAF 121
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
+V++ T ++ VHRA+FS+VT DI KAM L EP+ + AV ARQE+DL+VGV
Sbjct: 122 QVMDVTQSELRPG-ATVHRAKFSAVTPADIEKAMATLGEPDERLSEAVIARQELDLRVGV 180
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRF T +FQ KY LD+R +S
Sbjct: 181 AFTRFTTRHFQSKYAGLDARTLS 203
>gi|47212929|emb|CAF90301.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 139/205 (67%), Gaps = 3/205 (1%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIA +LS + +R +F ++ ++ + G + L+
Sbjct: 4 VLMVAEKPSLAQSIAKILSKEQENSRAGKIIFSQF-LIYSYCVLFVCLKHRFGVLRTLNS 62
Query: 66 PPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
Y +W+ +P +LF +AP K E++PK+++ + L EA+GC ++VLWLDCD+EGENIC
Sbjct: 63 LSKYNNWDKVDPAELFSKAPTEKKEASPKLNMIKFLQAEAKGCHYVVLWLDCDKEGENIC 122
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
FEVI + + + V+RA+FSS+T+ DI KAM L EPN NEALAVDARQE+DL++G
Sbjct: 123 FEVISVIN-KGSTREKSVYRAKFSSITDTDICKAMNCLGEPNHNEALAVDARQELDLRIG 181
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
AFTRFQT YFQGKYGNLDS IS
Sbjct: 182 CAFTRFQTKYFQGKYGNLDSSLISF 206
>gi|2114264|dbj|BAA20009.1| topoisomerase-III [Homo sapiens]
Length = 753
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 129/190 (67%), Gaps = 7/190 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFT 188
+DL++G AFT
Sbjct: 184 LDLRIGCAFT 193
>gi|407034342|gb|EKE37171.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 840
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 136/209 (65%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ +LMVAEKP +A SIA LS G ++TRK S VHEF+ F G K+TSV GHV
Sbjct: 1 MTLLMVAEKPLLAESIAKFLSLGPIHTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ +F A+Q+W+ +P DLF V K E+NPK I HL EA GC LVLWLDCDREG
Sbjct: 61 YTCEFERAFQNWSV-DPRDLFNCKVIKVEANPKTRIPAHLRNEANGCDGLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEV++ T + K++RA FSS+T+KDI++A +L P+ A AVD RQEID
Sbjct: 120 ENICFEVMDNTVSYMTKT-CKIYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEID 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L+VGVAFTR QT + + ++ L IS
Sbjct: 179 LRVGVAFTRLQTKFLKERFPKLGDSLISF 207
>gi|67473767|ref|XP_652633.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56469504|gb|EAL47247.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707795|gb|EMD47388.1| DNA topoisomerasebeta-1, putative [Entamoeba histolytica KU27]
Length = 840
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 136/209 (65%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ +LMVAEKP +A SIA LS G ++TRK S VHEF+ F G K+TSV GHV
Sbjct: 1 MTLLMVAEKPFLAESIAKFLSLGPIHTRKGIAPSCLVHEFNCKFKGKITKAKMTSVAGHV 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ +F A+Q+W+ +P DLF V K E+NPK I HL EA GC LVLWLDCDREG
Sbjct: 61 YTCEFERAFQNWSV-DPRDLFSCNVIKVEANPKTRIPAHLRNEANGCNGLVLWLDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENICFEV++ T + K++RA FSS+T+KDI++A +L P+ A AVD RQEID
Sbjct: 120 ENICFEVMDNTVSYMTKT-CKIYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEID 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L+VGVAFTR QT + + ++ L IS
Sbjct: 179 LRVGVAFTRLQTKFLKERFPKLGDSLISF 207
>gi|156084162|ref|XP_001609564.1| DNA topoisomerase [Babesia bovis T2Bo]
gi|154796816|gb|EDO05996.1| DNA topoisomerase, putative [Babesia bovis]
Length = 878
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 142/227 (62%), Gaps = 19/227 (8%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGK--LYTRKASTE-------VH---------EFDG 42
M+ KVL+VAEKP IA ++A L + L RK +E +H E G
Sbjct: 1 MSIPKVLVVAEKPKIAETLAAHLCTDQRTLLKRKGVSEDIMCDLGIHIISNTCITWECRG 60
Query: 43 MFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ 102
FL + KVTS GH++ + F P Y WN++NP++LF + E++P I RHL
Sbjct: 61 KFLSTTVDFKVTSTAGHIYSVAFAPRYNCWNSTNPVELFNGEIILEEASPDSKIPRHLAS 120
Query: 103 EARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGN 161
EA+GC +L+L LD DREGENI FEVI C V +++ RARFS++T DIL+A+ N
Sbjct: 121 EAKGCSYLLLCLDNDREGENIAFEVIRVCHQHLVKIGSKQIFRARFSALTRADILRAVDN 180
Query: 162 LVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L +PN+ E+ AV ARQ IDL+VG AFTRFQTT+FQGKYG+LDS IS
Sbjct: 181 LCDPNKLESDAVRARQTIDLRVGCAFTRFQTTFFQGKYGDLDSTCIS 227
>gi|198435562|ref|XP_002121520.1| PREDICTED: similar to topoisomerase (DNA) III beta, partial [Ciona
intestinalis]
Length = 827
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 121/175 (69%), Gaps = 3/175 (1%)
Query: 37 VHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHI 96
VHEF G F G KVTSV GHV +DF Y +W +P +LF AP K E+NPK++I
Sbjct: 11 VHEFTGKFKGETVRFKVTSVCGHVMSIDFEGKYNNWEKVDPGELFSAPTIKKEANPKLNI 70
Query: 97 CRHLNQEARGCGHLVLWLDCDREGENICFEVIEC---TGFQVNDARRKVHRARFSSVTEK 153
+ L +EAR ++VLWLDCDREGENICFEV++ + + + V RA FS++T+K
Sbjct: 71 IKFLEKEARDADYIVLWLDCDREGENICFEVLDIVLPVMRRSGNRQDVVFRAHFSAITDK 130
Query: 154 DILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DI A+ ++ +PN NE+ VDARQ++DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 131 DINAALNSVGKPNENESQCVDARQDLDLRLGCAFTRFQTKYFQGKYGDLDSSLIS 185
>gi|432876346|ref|XP_004073003.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1-like
[Oryzias latipes]
Length = 751
Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 126/210 (60%), Gaps = 35/210 (16%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIARILSKGSCTSRKGLNGACSVHEYTGTFQGQSVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF C + EARGC +VLWLDCD+EGEN
Sbjct: 64 LDFIG-----------------------------CGCVQVEARGCDFVVLWLDCDKEGEN 94
Query: 123 ICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ICFEV++ +N + V RA+FSS+T+ DI AM L +PN+NEAL+VDARQE+
Sbjct: 95 ICFEVLDAVQPVMNKGGVREQTVFRAKFSSITDTDIWNAMNRLEKPNKNEALSVDARQEL 154
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 155 DLRIGCAFTRFQTKYFQGKYGNLDSSLISF 184
>gi|431914329|gb|ELK15587.1| DNA topoisomerase 3-beta-1 [Pteropus alecto]
Length = 779
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 4/161 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLV 111
+TSV GHV LDF Y W+ +P +LF QAP K E+NPK+++ + L E +GC ++V
Sbjct: 1 MTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIV 60
Query: 112 LWLDCDREGENICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRN 168
LWLDCD+EGENICFEV++ +N A + V RARFSS+T+ DI AM L EP+ N
Sbjct: 61 LWLDCDKEGENICFEVLDAVLPVMNPAHGSEKTVFRARFSSITDTDICNAMARLGEPDHN 120
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
EAL+VDARQE+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 121 EALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 161
>gi|440291485|gb|ELP84754.1| DNA topoisomerase 3-beta-1, putative [Entamoeba invadens IP1]
Length = 853
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 133/207 (64%), Gaps = 3/207 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ +LMVAEKP +A SI+ L+ G + TR+ S VHEF F G K+T+V GHV+
Sbjct: 1 MAILMVAEKPLLAESISKFLATGPINTRRGISGFVHEFMCNFRGRPQKAKMTAVAGHVYT 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+F +Q W+ +P LF V K E+NPK HI HL EA+GC +VLWLDCDREGEN
Sbjct: 61 CEFEADFQKWSV-DPEALFSCKVKKEEANPKTHIPAHLKNEAKGCSAIVLWLDCDREGEN 119
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
ICFEV++ T + R ++RA FSS+T+ +I+KA NL P+ A AVDARQEIDL+
Sbjct: 120 ICFEVLDNTVDYMQKGCR-IYRAIFSSITKNEIVKAFNNLGSPDPRLAEAVDARQEIDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFISL 209
VG AFTR QTT+ + K+ + +S
Sbjct: 179 VGAAFTRLQTTFLKEKFPRMGDALVSF 205
>gi|145347645|ref|XP_001418273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578502|gb|ABO96566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 863
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 138/230 (60%), Gaps = 27/230 (11%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYT-------RKASTEVHEFDGMFLGSHAYI---- 51
P ++L VAEKPS+A +IA L+ G R +TEVHEF GS A+
Sbjct: 2 PTRILCVAEKPSLASAIARTLARGGDGGDRGVVARRGLATEVHEFATAREGSWAFASGTR 61
Query: 52 ------KVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR 105
+VTS GHV ++F YQ W P +LF A V K V HL +EAR
Sbjct: 62 DGRAEWRVTSTTGHVASVEFSARYQAWEGCEPGELFAADVVKRADGRMVG---HLEREAR 118
Query: 106 GCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARR------KVHRARFSSVTEKDILKA 158
GC +LVL+LDCDREGENICFEV+E C G A ++ RA+FS+VT + I +A
Sbjct: 119 GCDYLVLFLDCDREGENICFEVMEACAGGLKTGATEPGAPSARILRAKFSAVTRESIERA 178
Query: 159 MGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
M L EPNRNEALAVDARQE+DLK+GVAFTRFQT YF KY LD+R +S
Sbjct: 179 MRTLGEPNRNEALAVDARQELDLKMGVAFTRFQTQYFLNKYDRLDARVVS 228
>gi|444732291|gb|ELW72593.1| DNA topoisomerase 3-beta-1 [Tupaia chinensis]
Length = 946
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 140/263 (53%), Gaps = 62/263 (23%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGTMSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 ----------------------------------------------------LDFPPAYQ 70
L Y
Sbjct: 64 LDFIAVKGECSECRRACPQRSLSSCPCVTDNSSDNGVTKLGCVAKHVDPTLYLQLAGKYN 123
Query: 71 DWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE 129
W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGENICFEV++
Sbjct: 124 KWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLD 183
Query: 130 CTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE+DL++G
Sbjct: 184 AVLPVMNKAHGSEKTVFRARFSSITDTDICNAMSRLGEPDHNEALSVDARQELDLRIGRG 243
Query: 187 FTRFQTTYFQGKYGNLDSRFISL 209
FQT YFQGKYG+LDS IS
Sbjct: 244 ---FQTKYFQGKYGDLDSSLISF 263
>gi|219111227|ref|XP_002177365.1| DNA topoisomerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411900|gb|EEC51828.1| DNA topoisomerase, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 868
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 142/222 (63%), Gaps = 21/222 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT-----RKASTEVHE------FDGMFLGSHAYIK 52
+ +L VAEKPSIA +IA L+ + + R S V+E F H K
Sbjct: 1 ITILHVAEKPSIAQAIAHGLASAEGKSSNPSMRSKSLPVYELSNGISFPKAPHAKHFQHK 60
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GHVF +DFP YQ W++ +P +LF+AP+ + K + RHL EARG +VL
Sbjct: 61 ITSVAGHVFNVDFPEKYQSWDSVDPAELFEAPIVRKPC--KSSVVRHLEDEARGVHFIVL 118
Query: 113 WLDCDREGENICFEVIEC------TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN 166
W+DCDREGENI FEV++C +G N R V+RA FS++ DI KA +L +P+
Sbjct: 119 WMDCDREGENINFEVLDCCMHVMKSGGSSNFDR--VYRAYFSAINPSDIQKAYNSLGKPD 176
Query: 167 RNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+N+AL+VDARQE+DLKVG+AF+R+QT YFQG+YG+L+S +S
Sbjct: 177 KNQALSVDARQELDLKVGIAFSRYQTRYFQGRYGDLNSAVLS 218
>gi|268532954|ref|XP_002631605.1| Hypothetical protein CBG20786 [Caenorhabditis briggsae]
Length = 591
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 4/192 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKP +A SIA +LS G+ RK V E+DG F G +A KVTS GHV L
Sbjct: 1 LMVAEKPMLADSIANLLSNGQARKRKGWNGVCSVSEYDGQFNGRNAKFKVTSTCGHVMSL 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP Y +W +P +L+ AP K E+N K+ + L EA+ LVLWLDCD+EGENI
Sbjct: 61 DFPSKYNNWERVDPAELYSAPAVKIEANAKMKMNEFLASEAKTADILVLWLDCDKEGENI 120
Query: 124 CFEVIECTGFQVN-DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
CFEV F+ D V+RA FS++TEKD+ AM NL P++N AL+VDARQE+DL+
Sbjct: 121 CFEVGLNPMFKNRPDFMSDVYRAHFSAITEKDLKAAMKNLGRPDQNMALSVDARQELDLR 180
Query: 183 VGVAFTRFQTTY 194
+G +FTRFQT +
Sbjct: 181 IGCSFTRFQTKF 192
>gi|390351189|ref|XP_795949.3| PREDICTED: DNA topoisomerase 3-beta-1 [Strongylocentrotus
purpuratus]
Length = 954
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 124/198 (62%), Gaps = 32/198 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VLMVAEKP +A S+A +LS G L +R+ + VHE+ G F G A K+TSV GHV
Sbjct: 3 EVLMVAEKPQLAQSLAKILSQGSLRSRRGMNGACSVHEYTGTFRGQQAKFKMTSVCGHVH 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF P + +W+ +P +GC +LVLWLDCD+EGE
Sbjct: 63 GLDFHPRFNNWDKVDP--------------------------GKGCDYLVLWLDCDKEGE 96
Query: 122 NICFEVIECT-GFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEVI C G R+ + RA+FS++T+KDI +AM LVEPN NEAL+VDARQE
Sbjct: 97 NICFEVISCVQGVMTRPTGREQVIFRAKFSAITDKDIRQAMNTLVEPNENEALSVDARQE 156
Query: 179 IDLKVGVAFTRFQTTYFQ 196
+DL++G AFTRFQT YFQ
Sbjct: 157 LDLRIGCAFTRFQTKYFQ 174
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 100/132 (75%), Gaps = 3/132 (2%)
Query: 80 LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECT-GFQVNDA 138
LF AP + E+NP +H+ + L E +GC +LVLWLDCD+EGENICFEVI C G
Sbjct: 175 LFAAPTERKEANPNLHMPKFLAIEGKGCDYLVLWLDCDKEGENICFEVISCVQGVMTRPV 234
Query: 139 RRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
R+ + RA+FS++T+KDI +AM LVEPN NEAL+VDARQE+DL++G AFTRFQT YFQ
Sbjct: 235 GREQVIFRAKFSAITDKDIRQAMNTLVEPNENEALSVDARQELDLRIGCAFTRFQTKYFQ 294
Query: 197 GKYGNLDSRFIS 208
GKYG+LDS IS
Sbjct: 295 GKYGDLDSTLIS 306
>gi|195340394|ref|XP_002036798.1| GM12581 [Drosophila sechellia]
gi|194130914|gb|EDW52957.1| GM12581 [Drosophila sechellia]
Length = 921
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 3/175 (1%)
Query: 37 VHEFDGMFLGSHA-YIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH 95
HE+ G F + + ++TSV GHV LDF + W+ +P+ LF K E+NPK +
Sbjct: 84 THEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKFNCWDKVDPIQLFGCATEKKETNPKQN 143
Query: 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVND--ARRKVHRARFSSVTEK 153
+ + L EARGC +LVLWLDCD+EGENICFEV++ +N+ + + +RA FS++TEK
Sbjct: 144 MRKFLANEARGCDYLVLWLDCDKEGENICFEVMDAVKQVINNVYSDQVTYRAHFSAITEK 203
Query: 154 DILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DI KAM L PN NEA +VDARQE+DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 204 DIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLIS 258
>gi|118389870|ref|XP_001027980.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89309750|gb|EAS07738.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 916
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 102/213 (47%), Positives = 135/213 (63%), Gaps = 10/213 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL+VAEKPS+A IA+ LS R+ V+ ++G F G KVTSV GHV+
Sbjct: 206 EVLLVAEKPSVARKIASALSNKTSKKRQGKVRYLPVYVYEGRFKGQKTIFKVTSVTGHVY 265
Query: 62 RLDFPPAY-QDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDFP ++WN NP+ LF + K S K +I RHL EAR C +L+LWLD D+EG
Sbjct: 266 DLDFPQKLKENWNEINPVQLFSSDTLKIPS--KHNIVRHLESEARNCSYLLLWLDNDKEG 323
Query: 121 ENICFEVIE-CTGFQV--NDARRKVHRARFSSVTEKDILKAM-GNLVEPNRNEALAVDAR 176
ENICFEV + C D ++V R RFSS+T++DI+KA G PN NE+ AVDAR
Sbjct: 324 ENICFEVKQICEKVMCFKGDNVQQVLRTRFSSLTKQDIIKAFNGTTDPPNVNESKAVDAR 383
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+ IDLK+G +FTR+QT +F+ KY +L+ R IS
Sbjct: 384 RIIDLKIGASFTRYQTLFFRNKYPDLNKRTISF 416
>gi|403352748|gb|EJY75891.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1342
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 99/201 (49%), Positives = 127/201 (63%), Gaps = 9/201 (4%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE----VHEFDGMFLGSHAYIKVTSVV 57
+P V+MVAEKPSIALSIA LS Y +K V+ F G F G A+ +VTSV
Sbjct: 515 SPCVVMMVAEKPSIALSIAESLSNN--YEQKKGIARQIPVYTFKGNFQGKTAHFRVTSVA 572
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GHV+ DFP YQD +PL LF AP + I +HL + G +VLWLDCD
Sbjct: 573 GHVYNRDFPLDYQD-RRMDPLALFDAPTVRKLDGSSRTIAKHLQTVSSGIDFMVLWLDCD 631
Query: 118 REGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNL-VEPNRNEALAVDA 175
+EGENICFEV++ C R++V RA+FSS+ +KDI A + EP+ NE+++VDA
Sbjct: 632 KEGENICFEVLDICRKNIPKSKRQRVFRAKFSSIAKKDIQTAFDTVKAEPSYNESVSVDA 691
Query: 176 RQEIDLKVGVAFTRFQTTYFQ 196
RQ +DLK+GVAF+RFQT YFQ
Sbjct: 692 RQVMDLKIGVAFSRFQTQYFQ 712
>gi|441620017|ref|XP_004088632.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
[Nomascus leucogenys]
Length = 803
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 45/208 (21%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
VLMVAEKPS+A SIA +LS GK
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGK-------------------------------------- 25
Query: 66 PPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGENIC
Sbjct: 26 ---YNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENIC 82
Query: 125 FEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
FEV++ +N A + V +ARFSS+ + DI AM L EP+ NEAL+VDARQE+DL
Sbjct: 83 FEVLDAVLPVMNKAHGGEKTVFQARFSSIMDTDICNAMACLGEPDHNEALSVDARQELDL 142
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFISL 209
++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 143 RIGCAFTRFQTKYFQGKYGDLDSSLISF 170
>gi|195565409|ref|XP_002106294.1| GD16199 [Drosophila simulans]
gi|194203668|gb|EDX17244.1| GD16199 [Drosophila simulans]
Length = 821
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GHV LDF Y W+ +P+ LF K E+NPK ++ + L EARGC +LVL
Sbjct: 1 MTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLANEARGCDYLVL 60
Query: 113 WLDCDREGENICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
WLDCD+EGENICFEV++ +N+ + + +RA FS++TEKDI KAM L PN NEA
Sbjct: 61 WLDCDKEGENICFEVMDAVKQVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEA 120
Query: 171 LAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+VDARQE+DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 121 KSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLIS 158
>gi|395517223|ref|XP_003762778.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sarcophilus harrisii]
Length = 801
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 108/151 (71%), Gaps = 4/151 (2%)
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF +AP K E+NPK+ + + L E R C ++VLWLDCD+EGE
Sbjct: 3 LDFTGKYNHWDRVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRSCDYIVLWLDCDKEGE 62
Query: 122 NICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N R + V RARFSS+T+ DI AMG L EP+ NEAL+VDARQE
Sbjct: 63 NICFEVLDAVLPVMNKPRGTEKTVFRARFSSITDTDICNAMGRLGEPDHNEALSVDARQE 122
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 123 LDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 153
>gi|340372491|ref|XP_003384777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Amphimedon
queenslandica]
Length = 849
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 135/219 (61%), Gaps = 14/219 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSH-------AYIKV 53
++VLMVAEKPS+A S++ +LS G RK+ + +VHEF G A K+
Sbjct: 1 MRVLMVAEKPSLAKSLSEILSRGSSSRRKSSCSACDVHEFQGKLAVPGGGGPGLAAMFKM 60
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
TSV GHV LDF P Y +W ++PL L+ A K E+ P + I L QE +G +LVLW
Sbjct: 61 TSVCGHVMSLDFQPKYNNWETTDPLLLYDAETMKKEAIPSLRIPSFLRQEGKGVDYLVLW 120
Query: 114 LDCDREGENICFEVIECTGFQVNDAR----RKVHRARFSSVTEKDILKAMGNLVEPNRNE 169
LDCD+EGENIC+EVI + + + + RA+FS+VTE IL A NL PN NE
Sbjct: 121 LDCDKEGENICYEVINEVEPVMKPPKTPRTQTIFRAKFSAVTEAAILHAFNNLGFPNWNE 180
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+ +VDARQE+DL+VG +FTRFQT FQ Y L++ IS
Sbjct: 181 SRSVDARQELDLRVGCSFTRFQTKLFQSLYSGLNNSVIS 219
>gi|224083488|ref|XP_002307047.1| predicted protein [Populus trichocarpa]
gi|222856496|gb|EEE94043.1| predicted protein [Populus trichocarpa]
Length = 910
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 131/200 (65%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEKPS+A S+AT+LS +L R + ++ EF+ G ++ VTSV GH+
Sbjct: 2 IKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGHL 61
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
++F ++ W++ +P DL+ APV K K+ I R L +EAR C LVLWLDCDREG
Sbjct: 62 MEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDREG 121
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV+E C G N + RARFS++ E+DI +A NL+ PN+ + AVDARQEI
Sbjct: 122 ENIAFEVMEVCKGVNRN---LTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEI 178
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + ++
Sbjct: 179 DLRIGASFTRFQTMLLRDRF 198
>gi|399216452|emb|CCF73140.1| unnamed protein product [Babesia microti strain RI]
Length = 810
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 128/214 (59%), Gaps = 15/214 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ VL+VAEKPSIA +IA LS K+ + V LG + + +T GH+F L
Sbjct: 1 MNVLVVAEKPSIAEAIANALSNKKVNPKTGKFPVWIITAGVLGPKSTLHITCTTGHIFNL 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
F Y +W ++PL+LF A V + +N I HL+ A+ C L+L LD DREGENI
Sbjct: 61 SFHSKYNNWENTDPLELFSADVIQTYANSDA-IANHLSSIAKSCESLILALDNDREGENI 119
Query: 124 CFEVI---------ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CFEVI EC G N + RARFSS+ + DI+ A NL PN+NE+ AV
Sbjct: 120 CFEVISIVYKHLKSECKGLGKN-----IFRARFSSLVKCDIINAFKNLGMPNKNESDAVL 174
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
ARQEIDLK+G AFTRFQT FQ K+GNL+++ IS
Sbjct: 175 ARQEIDLKLGCAFTRFQTLSFQDKFGNLNTKLIS 208
>gi|384490193|gb|EIE81415.1| hypothetical protein RO3G_06120 [Rhizopus delemar RA 99-880]
Length = 761
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 126/206 (61%), Gaps = 30/206 (14%)
Query: 9 VAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPP 67
VAEKPS+A S++ +L+ G+ T K +T VHE+ G F A + TSV GHV+ LDF
Sbjct: 14 VAEKPSLAESLSKLLAPKGQFITHKRTTPVHEWTGQFRDQSAEFQFTSVTGHVYGLDFTK 73
Query: 68 AYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEV 127
+ W+ +PL LF A K ESNPK+ + HL A+G +LVLWLDCDREGENICFEV
Sbjct: 74 EHNSWDI-DPLQLFDAKTIKLESNPKMKMTYHLQNMAKGIDYLVLWLDCDREGENICFEV 132
Query: 128 IE-CTGF--QVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I+ C + Q + + H RA+FS AVDARQE+DLK
Sbjct: 133 IDNCLQYMKQPSTGNKMSHVLRAKFS-----------------------AVDARQELDLK 169
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
VGVAFTRFQT +FQGKYGNLDS IS
Sbjct: 170 VGVAFTRFQTRFFQGKYGNLDSTVIS 195
>gi|168067139|ref|XP_001785482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662889|gb|EDQ49689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 915
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 130/193 (67%), Gaps = 5/193 (2%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
P++VL VAEKPS+A S+A +LS G + TR + ++ EF G + +TSV GH
Sbjct: 4 PIRVLNVAEKPSVAKSVAVILSRGNVRTRNGRSVYNKIFEFGYTIGGQQCDMLMTSVTGH 63
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDF ++ W++ +P+DLFQAPV K KV++ + L +EAR C LVLWLDCDRE
Sbjct: 64 LMELDFEDQFRKWHSCDPVDLFQAPVRKKVPQDKVNLQKTLEEEARHCQWLVLWLDCDRE 123
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI +EV++ + ++AR + RA FS++ +++I A+ +L PN+ A AVDARQEI
Sbjct: 124 GENIAYEVVDVC--RASNARINIWRAHFSALIDREIHHAVQHLGRPNKMYADAVDARQEI 181
Query: 180 DLKVGVAFTRFQT 192
DL++G +FTRFQT
Sbjct: 182 DLRIGASFTRFQT 194
>gi|339245323|ref|XP_003378587.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
gi|316972491|gb|EFV56168.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
Length = 819
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TS GHV ++FP Y DW+ +P LF A V K E+NPK+ + L E RG +LVL
Sbjct: 1 MTSTCGHVMTMNFPKKYNDWDRVDPATLFHADVIKEEANPKLKMVNFLASEGRGVDYLVL 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
WLDCD+EGENICFEVI+ + +R ++RA+FSS+ +DILKAM L PN+ +A
Sbjct: 61 WLDCDKEGENICFEVIDIVQPMMRHPYDQRAIYRAQFSSLAPQDILKAMSKLGRPNKLQA 120
Query: 171 LAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++VD RQE+DL++G AFTRFQT +F KYGN+DS+ IS
Sbjct: 121 VSVDTRQELDLRIGCAFTRFQTRFFHEKYGNVDSKLIS 158
>gi|357464743|ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula]
gi|355491701|gb|AES72904.1| DNA topoisomerase [Medicago truncatula]
Length = 587
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGH 59
+ VL VAEKPS+A S+A++LS + L R + + EF+ G + TSV+GH
Sbjct: 6 ITVLNVAEKPSVAKSVASILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFTSVLGH 65
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDF Y+ W++ +P DLFQAPVHK K I R L +EAR C L+LWLDCDRE
Sbjct: 66 LMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDRE 125
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FEVI CT N + RARFS++ +++I +A+ NLVEPN+ A AVDARQE
Sbjct: 126 GENIAFEVINVCTAANPN---LTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQE 182
Query: 179 IDLKVGVAFTRFQTTYFQGKY 199
IDL++G FTRFQT + +
Sbjct: 183 IDLRIGATFTRFQTMLMKDAF 203
>gi|412993300|emb|CCO16833.1| predicted protein [Bathycoccus prasinos]
Length = 949
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 135/228 (59%), Gaps = 29/228 (12%)
Query: 7 LMVAEKPSIALSIATVLS--------------------GGKLYTRK---ASTEVHEFDGM 43
L VAEKPS+A SIA +LS G L T+K S E+HEF
Sbjct: 20 LHVAEKPSLAKSIAQLLSSSSSSSLDDCDEKSSLGNKRGTGLKTKKTTVGSIEIHEFYRP 79
Query: 44 FLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE 103
FL + TSV GHV +DFP +QDW+ +P LF K + ++ L +E
Sbjct: 80 FLRKKCLHRFTSVAGHVCSIDFPDKFQDWDL-DPKLLFDCKTEKKVTAGRIR--GSLERE 136
Query: 104 ARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRK---VHRARFSSVTEKDILKAMG 160
AR C LVLWLDCDREGENICFEV++ ++ + V+RA+FS++++ + AM
Sbjct: 137 ARTCDALVLWLDCDREGENICFEVMDAVVPRMRGGGGRYENVYRAKFSAISKPSVENAMK 196
Query: 161 NLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
NL +PN+NE+ AVDARQE+DLK+GVAFTRFQT YFQ K+ DSR +S
Sbjct: 197 NLTKPNKNESDAVDARQELDLKMGVAFTRFQTKYFQDKFSGFDSRCVS 244
>gi|449521062|ref|XP_004167550.1| PREDICTED: DNA topoisomerase 3-like, partial [Cucumis sativus]
Length = 607
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 131/206 (63%), Gaps = 9/206 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
+ VL VAEKPS+A S+AT+LS + L R + ++ EF+ G + VTSV GH
Sbjct: 7 ITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIVTSVTGH 66
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L F Y+ W++ +P+ LF APVHK K+ I R L QE+R LVLWLDCDRE
Sbjct: 67 LMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWLDCDRE 126
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FEV+E CT + + RA FS++ E+DI A+ NLV+PN+ A AVDARQE
Sbjct: 127 GENIAFEVVEVCTAV---NHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDS 204
IDL++G +FTRFQT + + N+DS
Sbjct: 184 IDLRIGASFTRFQTLLLKDAF-NIDS 208
>gi|15237561|ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|8777305|dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|169218912|gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana]
gi|332010433|gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 926
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 135/216 (62%), Gaps = 12/216 (5%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVG 58
P+ VL VAEKPS+A S+A +LS G TR+ + ++ EFD G + +TSV+G
Sbjct: 7 GPVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIG 66
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ W++ +P DL+QAPV K K I + L +EAR LVLWLDCDR
Sbjct: 67 HLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDR 126
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FEV++ C + N R+ H FS++ ++DI +A+ NL +PN+ A AVDARQ
Sbjct: 127 EGENIAFEVVDVCRAVKHNLFIRRAH---FSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183
Query: 178 EIDLKVGVAFTRFQTTYFQGKY-----GNLDSRFIS 208
EIDL++G +FTRFQT + ++ G SR IS
Sbjct: 184 EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVIS 219
>gi|297793983|ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
gi|297310711|gb|EFH41135.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
Length = 923
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 135/216 (62%), Gaps = 12/216 (5%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVG 58
P+ VL VAEKPS+A S+A +LS G TR+ + ++ EFD G + +TSV+G
Sbjct: 7 GPVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIG 66
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ W++ +P DL+QAPV K K I + L +EAR LVLWLDCDR
Sbjct: 67 HLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDR 126
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FEV++ C + N R+ H FS++ ++DI +A+ NL +PN+ A AVDARQ
Sbjct: 127 EGENIAFEVVDVCRAVKHNLFIRRAH---FSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183
Query: 178 EIDLKVGVAFTRFQTTYFQGKY-----GNLDSRFIS 208
EIDL++G +FTRFQT + ++ G SR IS
Sbjct: 184 EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVIS 219
>gi|449437640|ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
Length = 925
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 131/206 (63%), Gaps = 9/206 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
+ VL VAEKPS+A S+AT+LS + L R + ++ EF+ G + VTSV GH
Sbjct: 7 ITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIVTSVTGH 66
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L F Y+ W++ +P+ LF APVHK K+ I R L QE+R LVLWLDCDRE
Sbjct: 67 LMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWLDCDRE 126
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FEV+E CT + + RA FS++ E+DI A+ NLV+PN+ A AVDARQE
Sbjct: 127 GENIAFEVVEVCTAV---NHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDS 204
IDL++G +FTRFQT + + N+DS
Sbjct: 184 IDLRIGASFTRFQTLLLKDAF-NIDS 208
>gi|296088524|emb|CBI37515.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 131/200 (65%), Gaps = 6/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
+KVL VAEKPS+A ++AT+LS + L R+ + ++ EF+ G H + VTSV+GH
Sbjct: 1 MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L+F ++ W++ +P L+ APV K K+ I R L +EAR C LVLWLDCDRE
Sbjct: 61 LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FEV+E QVN V RARFS++ +++I +++ NLV PN+ A AVD RQEI
Sbjct: 121 GENIAFEVLEVCA-QVN-RHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEI 178
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 179 DLRIGASFTRFQTMLLRDAF 198
>gi|124513658|ref|XP_001350185.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
gi|23615602|emb|CAD52594.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
Length = 710
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 90/198 (45%), Positives = 127/198 (64%), Gaps = 5/198 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
MA LKVL VAEKPS+A SIA +LS G+ K+ ++ V FD Y+ VTSV
Sbjct: 1 MARLKVLNVAEKPSVASSIAEILSKGRPNKIKSCSKYNPVFTFDYKIKNDIWYMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W+ ++P +LF A + K +I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI ++ + + +HRA+FS+VTEKDI+ A+ NL EPN+N A +VD R+
Sbjct: 121 REGEHICFEVINAC--RITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTTYF 195
EIDL++G FTRF T +
Sbjct: 179 EIDLRMGSIFTRFMTIRY 196
>gi|297721829|ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa Japonica Group]
Length = 928
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 132/202 (65%), Gaps = 9/202 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLS--GGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVG 58
++VL VAEKPS+A S+A +LS G + +R+ + V EFD G ++ VTSV G
Sbjct: 10 IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F ++ W++ +P DLF APV K+ K I R L +EAR C LVLWLDCDR
Sbjct: 70 HLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVLWLDCDR 129
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI +EVI+ C G ++R + RARFS++ +++I +A+ +L PN+ A AVDARQ
Sbjct: 130 EGENIAYEVIDICAG---ANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDARQ 186
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
EIDL++G +FTRFQT + +
Sbjct: 187 EIDLRIGASFTRFQTMLLKDAF 208
>gi|357113918|ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachypodium distachyon]
Length = 924
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 130/200 (65%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEKPS+A S+A +LS + +R + + EF+ G ++ VTSV GH+
Sbjct: 11 IRVLNVAEKPSVAKSVAEILSRRAMQSRPGRSRYNRIFEFNYAIGGQACHMLVTSVTGHL 70
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF Y+ W + +P++LF APV KA K+ I R L +EAR C LVLWLDCDREG
Sbjct: 71 MELDFDDRYRRWYSCDPVELFHAPVRKAVPQDKLDIKRTLEEEARTCQWLVLWLDCDREG 130
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +EV+E C G VN + RARFS++ +++I +A+ +L PN+ A AVDARQEI
Sbjct: 131 ENIAYEVVEICAG--VNHC-LNIWRARFSALIDREIHEAVQHLGRPNKLFADAVDARQEI 187
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 188 DLRIGASFTRFQTMLLKDAF 207
>gi|281201507|gb|EFA75716.1| DNA topoisomerase III [Polysphondylium pallidum PN500]
Length = 1103
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 134/211 (63%), Gaps = 8/211 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFD-GMFLGSHAYIKV-TSVVG 58
+K+L VAEKPS A I+T+L+G + R ++ V E+ LG + V TSV+G
Sbjct: 328 MKILNVAEKPSAAEEISTILAGRRPQRRDGFSKYNCVWEYKCSPVLGQNDVDMVFTSVLG 387
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHK-AESNPKVHICRHLNQEARGCGHLVLWLDCD 117
H+ D P Y +W + +P+DLF+AP+HK + ++ + L +E R C L+LWLDCD
Sbjct: 388 HLMTTDVVPPYTNWTSCDPIDLFEAPIHKFIDGENSTNLDKTLKREGRRCDTLILWLDCD 447
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENI FEVIE + + +++RA FSS+ +I +A+ NL +PN+N+++AVD R
Sbjct: 448 REGENIAFEVIE--SVRAVNRNIRIYRAHFSSIIPAEIKRAISNLAQPNKNDSMAVDCRI 505
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
EIDL++G AFTRFQ+ Y + K+ D + IS
Sbjct: 506 EIDLRLGAAFTRFQSRYLRSKFEINDDQPIS 536
>gi|255572920|ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223533243|gb|EEF34998.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 833
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 132/204 (64%), Gaps = 12/204 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK---LYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
+ VL VAEKPS+A S+AT+LS + L R+ + ++ EF+ + G + ++ VTSV
Sbjct: 2 INVLNVAEKPSVAKSVATILSRNQQHGLRVREGQSRYNKIFEFNYVINGQNCHMLVTSVT 61
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ L+F ++ W++ +P DL+ APV K K +I R L +EAR C L+LWLDCD
Sbjct: 62 GHLMELEFDDRFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLILWLDCD 121
Query: 118 REGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
REGENI FEV++ A R V RARFS++ +++I +A NLV PN+ + AVDA
Sbjct: 122 REGENIAFEVVDV----CRSANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSDAVDA 177
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY 199
RQEIDL++G +FTRFQT + K+
Sbjct: 178 RQEIDLRIGASFTRFQTLLLRDKF 201
>gi|145527750|ref|XP_001449675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417263|emb|CAK82278.1| unnamed protein product [Paramecium tetraurelia]
Length = 949
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 128/200 (64%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LK+LMVAEK SIA ++A + G K+ +K + F GMF G A VT+ GH+F
Sbjct: 30 LKILMVAEKNSIAEAVAYAI-GNKVRAKKGRQAFYYFSGMFKGQQANFTVTATNGHLFSR 88
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFP Y++WN+ +P+DLFQA K +N K I L + + G +L+LWLD DREGENI
Sbjct: 89 DFPKEYENWNSCDPIDLFQAKTIKKPAN-KAGI-GLLRKCSSGIDYLILWLDNDREGENI 146
Query: 124 CFEVIECTGFQVN--DARRKVHRARFSSVTEKDILKAMGNL-VEPNRNEALAVDARQEID 180
CFEV E +N + RK+ RA+FSS+T+ D+ A L PN E+ +VDARQ ID
Sbjct: 147 CFEVDEVKSKVINLGNLIRKL-RAKFSSITQTDLKYAYNQLNTGPNILESESVDARQIID 205
Query: 181 LKVGVAFTRFQTTYFQGKYG 200
LKVGVAF+RFQT +FQ KY
Sbjct: 206 LKVGVAFSRFQTLHFQKKYS 225
>gi|225431699|ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
Length = 914
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 131/200 (65%), Gaps = 6/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGH 59
+KVL VAEKPS+A ++AT+LS + L R+ + ++ EF+ G H + VTSV+GH
Sbjct: 1 MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L+F ++ W++ +P L+ APV K K+ I R L +EAR C LVLWLDCDRE
Sbjct: 61 LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FEV+E QVN V RARFS++ +++I +++ NLV PN+ A AVD RQEI
Sbjct: 121 GENIAFEVLEVCA-QVN-RHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEI 178
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 179 DLRIGASFTRFQTMLLRDAF 198
>gi|218201738|gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
Length = 897
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 131/202 (64%), Gaps = 9/202 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLS--GGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVG 58
++VL VAEKPS+A S+A +LS G + +R+ + V EFD G ++ VTSV G
Sbjct: 10 IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F ++ W++ +P DLF APV K+ K I R L +EAR C LVLWLDCDR
Sbjct: 70 HLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVLWLDCDR 129
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI +EVI+ C G ++R + RA FS++ +++I +A+ +L PN+ A AVDARQ
Sbjct: 130 EGENIAYEVIDICAG---ANSRLNIWRACFSALIDREIHEAVQHLDRPNKLFADAVDARQ 186
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
EIDL++G +FTRFQT + +
Sbjct: 187 EIDLRIGASFTRFQTVLLKDAF 208
>gi|443692088|gb|ELT93762.1| hypothetical protein CAPTEDRAFT_193082 [Capitella teleta]
Length = 934
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 7/203 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+++L VAEK A ++A ++SGG+ R+ ++ ++EFD + + +TSV GH+
Sbjct: 2 VRILNVAEKNDAAKTLAGLMSGGRSRKREGFSKFNKIYEFDYNLFNQNCTMSMTSVSGHL 61
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F +++ W++ NP+ LF AP+HK I R L +EARGC LV+W DCDREG
Sbjct: 62 LGCEFEASHRKWHSCNPVSLFDAPIHKTCPENYKDIKRTLEREARGCEILVVWTDCDREG 121
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEVI+ CT + N +V+RARFS +T + +A+ NL P++N + AVD RQE+
Sbjct: 122 ENIGFEVIQVCTAVKPN---MRVYRARFSEMTPGAVTRAIANLQPPDKNVSDAVDVRQEL 178
Query: 180 DLKVGVAFTRFQTTYFQGKYGNL 202
DL++G +FTRFQT Q + N+
Sbjct: 179 DLRIGASFTRFQTMRLQKVFPNV 201
>gi|255072381|ref|XP_002499865.1| predicted protein [Micromonas sp. RCC299]
gi|226515127|gb|ACO61123.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 639
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 123/200 (61%), Gaps = 6/200 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M P++VL VAEKPS+A ++ VLS G R+ +++ + EF +G + TSV
Sbjct: 1 MPPIRVLNVAEKPSVAKEVSRVLSNGGCTNRRGASQYNAIWEFPYTVMGQRCDMVFTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQ-APVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GHV LDFPP+++ WN NP +L A V K K + +L +EA C L+LWLDC
Sbjct: 61 GHVMGLDFPPSHRGWNTCNPRELIDGARVVKQVDKGKEKVAENLRKEASRCAWLILWLDC 120
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
DREGENI FEV++ + + + RARFS+++ D+ +A+ LV+PN +E+ AVD R
Sbjct: 121 DREGENIAFEVMDIC--KQSKPGIRCLRARFSALSHNDVTRALARLVDPNPHESAAVDMR 178
Query: 177 QEIDLKVGVAFTRFQTTYFQ 196
QE+DL+ G AFTRF T Q
Sbjct: 179 QELDLRFGSAFTRFNTLLLQ 198
>gi|302774743|ref|XP_002970788.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
gi|300161499|gb|EFJ28114.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
Length = 794
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEKPS A IA +LS G L + F+ M G + +TSV GH+
Sbjct: 3 VNVLNVAEKPSAAKEIAQILSHGDCRSLSGHSVYNRIFHFNYMIGGQPCRMVMTSVSGHL 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF ++ W +P DLFQAPV + K+ I R L ++AR C LVLWLDCDREG
Sbjct: 63 MELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVLWLDCDREG 122
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI +EV+E VN V RARFS+ E++I A NL PNRN + AVDARQEID
Sbjct: 123 ENIAYEVVEVC-LNVNRG-LNVLRARFSAFIEREIQHAAQNLHRPNRNLSDAVDARQEID 180
Query: 181 LKVGVAFTRFQTTYFQGKY 199
L++G +FTRFQT + ++
Sbjct: 181 LRIGASFTRFQTMLLKDRF 199
>gi|302806755|ref|XP_002985109.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
gi|300147319|gb|EFJ13984.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
Length = 791
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEKPS A IA +LS G L + F+ M G + +TSV GH+
Sbjct: 3 VNVLNVAEKPSAAKEIAQILSHGDCRSLSGHSVYNRIFHFNYMIGGQPCRMVMTSVSGHL 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF ++ W +P DLFQAPV + K+ I R L ++AR C LVLWLDCDREG
Sbjct: 63 MELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVLWLDCDREG 122
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI +EV+E VN V RARFS+ E++I A NL PNRN + AVDARQEID
Sbjct: 123 ENIAYEVVEVC-LNVNRG-LNVLRARFSAFIEREIQHAAQNLHRPNRNLSDAVDARQEID 180
Query: 181 LKVGVAFTRFQTTYFQGKY 199
L++G +FTRFQT + ++
Sbjct: 181 LRIGASFTRFQTMLLKDRF 199
>gi|340059110|emb|CCC53485.1| putative DNA topoisomerase III, fragment [Trypanosoma vivax Y486]
Length = 782
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 117/187 (62%), Gaps = 3/187 (1%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
+VLMVAEKPSIA S+A LS G+ R + V+E+DG F G A VTS GH+F D
Sbjct: 4 RVLMVAEKPSIAESVAQHLSNGQAVKRPRALPVYEYDGHFHGYPARFCVTSTTGHIFSCD 63
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
F P +Q W+ ++ LF APV E + KV +HL EA GC LVLWLDCDREGENIC
Sbjct: 64 FTPQHQSWDRTDEEVLFSAPVVWKEESGKVS--KHLAHEAEGCDTLVLWLDCDREGENIC 121
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
FEV++ ++D R + RA+FS++T + I +A NL PN++ + AV RQE+DL
Sbjct: 122 FEVMQVVARSIHDM-RNIWRAKFSAITREAITEAFRNLGRPNKHLSDAVSCRQELDLNRS 180
Query: 185 VAFTRFQ 191
A F+
Sbjct: 181 GAQITFE 187
>gi|303271853|ref|XP_003055288.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463262|gb|EEH60540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 639
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
M P++VL VAEKPS+A ++ VLS G+ R+ T ++ EF+ G + TSV
Sbjct: 1 MPPIRVLNVAEKPSVAKEVSRVLSNGRASMREGQTPWNKIWEFEHRVQGQQCRMVFTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQ-APVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ LDF + W N +L APV K S+ K +L +EAR L+LWLDC
Sbjct: 61 GHLMNLDFTGGARKWGGINARELIDGAPVEKMVSSGKEKTAENLRREARNAAWLILWLDC 120
Query: 117 DREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
DREGENI FEV++ C G + ++ RARFS+++ D+ +A+ LV PN NE+ AVD
Sbjct: 121 DREGENIAFEVMDVCRGVKPT---LRILRARFSALSHNDVTRALNALVAPNENESKAVDM 177
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY 199
RQE+DL++G +FTRF T Q ++
Sbjct: 178 RQELDLRLGASFTRFNTMLLQNRF 201
>gi|328871269|gb|EGG19640.1| DNA topoisomerase III [Dictyostelium fasciculatum]
Length = 812
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 127/204 (62%), Gaps = 8/204 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M KVL VAEKPS A I+ +L+G + R ++ + EF LG +A + TSV+
Sbjct: 24 MVANKVLNVAEKPSAAEEISQLLAGTRPRKRPGLSKYNPIWEFKYNILGGNADMVFTSVL 83
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHK-AESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ + Y W + P++LF V K +S+ ++ + + +EAR C LVLWLDC
Sbjct: 84 GHLMNTEVEERYIPWYSCEPVELFHCGVRKYIQSDDNQNLFKTIQREARQCDTLVLWLDC 143
Query: 117 DREGENICFEVIECTGFQVNDARR-KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
DREGENI FEVI+C V R ++RARFSS+ +++ +A NLV PN N+++AVD
Sbjct: 144 DREGENIAFEVIDCA---VKANRNLMIYRARFSSIIPQEVKRACANLVRPNENDSIAVDT 200
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY 199
R EIDL++G AFTRFQT Y +GK+
Sbjct: 201 RIEIDLRLGAAFTRFQTLYLRGKF 224
>gi|301092946|ref|XP_002997323.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 907
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 130/210 (61%), Gaps = 15/210 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMF------LGSHAYIKVTSVV 57
+KVL VAEKPS+A IA +LS G+ + R +++ +F G + VTSV
Sbjct: 1 MKVLNVAEKPSVAKEIANILSSGRSH-RVCRAGFSKYNALFEFPYQVRGQQVQMVVTSVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKA----ESNPKVHICRHLNQEARGCGHLVLW 113
GH+ LDF + + W++ +P+DLF APV K E+ K+ + L +EA+ LVLW
Sbjct: 60 GHIMELDFDASVRSWHSCDPVDLFTAPVTKKIRSDETQKKIE--KTLMEEAKHSQWLVLW 117
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
LDCDREGENI +EV + ++R +V RARFS++ +DI+ A+ NL +PN +LAV
Sbjct: 118 LDCDREGENIAYEVKSIC--EKTNSRLRVFRARFSALIPRDIVHAVQNLSQPNEKLSLAV 175
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLD 203
DAR EIDL++G AFTRFQT Q ++ L+
Sbjct: 176 DARSEIDLRIGAAFTRFQTMRIQSRFPALN 205
>gi|348689657|gb|EGZ29471.1| hypothetical protein PHYSODRAFT_470148 [Phytophthora sojae]
Length = 916
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 129/204 (63%), Gaps = 11/204 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFL------GSHAYIKVTSVV 57
+KVL VAEKPS+A IA++LS G+ R + +++ +F G + VTSV
Sbjct: 1 MKVLNVAEKPSVAKEIASILSLGR-SQRVCAARFSKYNALFEFPYQIHGQQVQMVVTSVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKA--ESNPKVHICRHLNQEARGCGHLVLWLD 115
GH+ LDF + + W++ +P+DLF APV K + + I + L +EAR LVLWLD
Sbjct: 60 GHIMELDFDASVRGWHSCDPVDLFTAPVCKRIRSDDTQKKIEKTLLKEARQSQWLVLWLD 119
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGENI +EV +C + N R +V RARFS++ +DI+ A+ NL EPN +LAVDA
Sbjct: 120 CDREGENIAYEV-KCICERSN-RRLRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDA 177
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY 199
R EIDL++G AFTRFQT Q ++
Sbjct: 178 RSEIDLRIGAAFTRFQTMRIQSRF 201
>gi|242036831|ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
gi|241919664|gb|EER92808.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
Length = 860
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEKPS+A ++A +LS + +R ++ + EF+ G ++ VTSV GH+
Sbjct: 9 IRVLNVAEKPSVAKAVAEILSRRSMQSRAGRSQYNRIFEFNYAINGRACHMLVTSVTGHL 68
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F ++ W++ +P +LF APV K+ K I + L +EAR C LVLWLDCDREG
Sbjct: 69 MELEFDERFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLDCDREG 128
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +EVI+ CTG ++ + RARFS++ +++I +++ +L PN+ A AVDARQEI
Sbjct: 129 ENIAYEVIDVCTG---ANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQEI 185
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 186 DLRIGASFTRFQTMLLKDAF 205
>gi|393245510|gb|EJD53020.1| prokaryotic type I DNA topoisomerase [Auricularia delicata
TFB-10046 SS5]
Length = 613
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTR-KASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+KVL VAEKPSIA S+ T+LSGG+ TR A FD ++ +A VT+V GH+
Sbjct: 1 MKVLCVAEKPSIARSVTTILSGGQFETRATADKYTKNFDFIYRPLNANFTVTAVRGHLKE 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFP Y+ W+A++P DLF APV S I R+L EAR L++W DCDREGE+
Sbjct: 61 HDFPSDYRKWSATDPFDLFDAPVESTVSKDGKFIERNLVAEARSADMLMIWTDCDREGEH 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E+ E Q + R +V RARFS++ + I +A N V+ + + AV+AR +DL+
Sbjct: 121 IGAEIAEVC--QKANRRIQVRRARFSAIIAQQIHQAAQNTVDLDYRQVDAVEARTVLDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
+G AFTR QT Q ++ LD + IS
Sbjct: 179 LGAAFTRLQTLKLQNQFQELDGQVIS 204
>gi|330804855|ref|XP_003290405.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
gi|325079456|gb|EGC33055.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
Length = 831
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 123/199 (61%), Gaps = 10/199 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLG----SHAYIKVTSVVGH 59
+K+L VAEKPS A IA +LS K R+ ++ ++ L A + TSV GH
Sbjct: 1 MKILNVAEKPSAAKEIAQILSNKKCRMREGKSQYNKIWDFHLDILNQKGAEMIFTSVTGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ D Y+ WN+ P+ LF+ P+ K S+ K++I + L E + C L+LWLDCDRE
Sbjct: 61 LMETDVDERYKPWNSCEPIKLFEVPIRKIVSHDKLNIKQQLETEIKKCDVLILWLDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GENI FEV++ N A++ KV+RA FS++ +++ +A+ NL EPN +++AVD R
Sbjct: 121 GENIAFEVLQV----CNSAKKRFKVYRAIFSAIIPREVNRAIANLKEPNEKDSIAVDTRI 176
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL++G AFTRFQT Y +
Sbjct: 177 EIDLRLGAAFTRFQTLYLK 195
>gi|390341006|ref|XP_782119.2| PREDICTED: DNA topoisomerase 3-alpha [Strongylocentrotus
purpuratus]
Length = 1058
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 122/202 (60%), Gaps = 7/202 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A SIA V+S G+ R+ ++ ++EFD L + +TSV GH+
Sbjct: 25 KVLNVAEKNDAAKSIADVMSHGRYRRREGFSKFNKIYEFDYSMLNQQCDMTMTSVSGHLL 84
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+F AYQ W++ NP+ LF APV K I R L +EAR LV+W DCDREGE
Sbjct: 85 NYEFALAYQKWHSCNPVALFDAPVQKGCPENYKDIKRTLEREARAADVLVIWTDCDREGE 144
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI +EVI+ C + R V+RARFS +T + I +A NLV P++ + AVD RQ++D
Sbjct: 145 NIGYEVIDVCKAVK---PRLDVYRARFSEITPQSITRACANLVRPDQRVSQAVDVRQQLD 201
Query: 181 LKVGVAFTRFQTTYFQGKYGNL 202
L++G AFTRFQT Q + +L
Sbjct: 202 LRIGAAFTRFQTLRLQRVFPDL 223
>gi|221058465|ref|XP_002259878.1| DNA topoisomerase III [Plasmodium knowlesi strain H]
gi|193809951|emb|CAQ41145.1| DNA topoisomerase III, putative [Plasmodium knowlesi strain H]
Length = 661
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 125/198 (63%), Gaps = 5/198 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
MAP+ VL VAEKPS+A +IA +LS GK+ +K+ ++ V F+ + VTSV
Sbjct: 1 MAPIHVLNVAEKPSVASAIANILSRGKMERKKSCSKYNPVFTFNYQRDNETWSMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W ++P LF A + N K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTEQKFDDKYRNWLNTDPQVLFDAEITIYVENDKKTIENNLKRYSKFCNLLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI T F +N R + RA+FS+VTEKDI+ A+ NL PNRN A +VD R+
Sbjct: 121 REGEHICFEVIN-TCFVMNRDLR-IKRAQFSAVTEKDIIHAINNLKYPNRNLANSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTTYF 195
EIDL++G FTRF T +
Sbjct: 179 EIDLRMGSIFTRFLTIRY 196
>gi|91089373|ref|XP_973578.1| PREDICTED: similar to topoisomerase (DNA) III alpha [Tribolium
castaneum]
gi|270012533|gb|EFA08981.1| hypothetical protein TcasGA2_TC006688 [Tribolium castaneum]
Length = 951
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 127/210 (60%), Gaps = 8/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
++ L VAEK A +IA +LS G R+ + +++EFD +G A++ +TSV GH+
Sbjct: 1 MRYLNVAEKNDAAKNIAAILSRGASQRREGFSPYNKIYEFDATVMGQQAHMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F P++++W + NP+ LF APV K I R L +E R C L++W DCDREG
Sbjct: 61 LNYEFGPSFRNWKSCNPVALFDAPVVKMCPEDYQKIKRTLEREIRSCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+I+ C+ + N +++RA+FS +T I +A+ L +PN+N + AVD RQE+
Sbjct: 121 ENIGFEIIKVCSDVKPN---LRIYRAKFSEITAASIFRALNTLGQPNKNVSDAVDVRQEL 177
Query: 180 DLKVGVAFTRFQTTYFQGKYGN-LDSRFIS 208
DL+ G AFTR QT Q + L R IS
Sbjct: 178 DLRTGAAFTRLQTLRLQRVFPQKLADRLIS 207
>gi|389584867|dbj|GAB67598.1| DNA topoisomerase III alpha [Plasmodium cynomolgi strain B]
Length = 646
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 125/198 (63%), Gaps = 5/198 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
MA + VL VAEKPS+A +IA +LS GK+ +K+ ++ V F+ + VTSV
Sbjct: 1 MARIHVLNVAEKPSVASAIADILSKGKMEKKKSCSKYNPVFTFNYKREHETWSMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W ++P +LF A + N K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTEQKFDDKYRNWINTDPQELFDAEITIYVENDKKKIENNLKKYSKFCNLLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI T F +N R + RA+FS+VTEKDIL A+ NL PNRN A +VD R+
Sbjct: 121 REGEHICFEVIN-TCFVMNREIR-IKRAQFSAVTEKDILHAINNLKYPNRNLAYSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTTYF 195
EIDL++G FTRF T +
Sbjct: 179 EIDLRMGSIFTRFLTIRY 196
>gi|67483198|ref|XP_656880.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56474106|gb|EAL51494.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704214|gb|EMD44500.1| DNA topoisomerase alpha, putative [Entamoeba histolytica KU27]
Length = 607
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIK-------VTSVVG 58
+L VAEKPS+A +I+ LS G T K + + +++ +F H + VTSV G
Sbjct: 4 ILHVAEKPSVASAISYTLSRG---TCKKTPGLSKYNSVFSFEHEFKNDGKCTHYVTSVAG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +DF AY+ W + +P +LF AP+ K+ + + +L A+ C LVLWLDCDR
Sbjct: 61 HLKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVLWLDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGENI FEVIE +VN ++ KV RA F+S+ +I+KA L PN++ + AVD RQE
Sbjct: 121 EGENISFEVIEVCS-EVN-SKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSEAVDVRQE 178
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
IDL+ G AFTRFQTT + K L+ + +S
Sbjct: 179 IDLRTGAAFTRFQTTLLKNKSKALEGKVLS 208
>gi|407035752|gb|EKE37830.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 607
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIK-------VTSVVG 58
+L VAEKPS+A +I+ LS G T K + + +++ +F H + VTSV G
Sbjct: 4 ILHVAEKPSVASAISYTLSRG---TCKKTPGLSKYNSVFSFEHEFKNDGKCTHYVTSVAG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +DF AY+ W + +P +LF AP+ K+ + + +L A+ C LVLWLDCDR
Sbjct: 61 HLKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVLWLDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGENI FEVIE +VN ++ KV RA F+S+ +I+KA L PN++ + AVD RQE
Sbjct: 121 EGENISFEVIEVCS-EVN-SKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSEAVDVRQE 178
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
IDL+ G AFTRFQTT + K L+ + +S
Sbjct: 179 IDLRTGAAFTRFQTTLLKNKSKALEGKVLS 208
>gi|414864982|tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 329
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEKPS+A ++A +LS +R ++ + EF+ G ++ VTSV GH+
Sbjct: 9 IRVLNVAEKPSVAKAVAEILSRRSAQSRAGRSQYNRIFEFNYAINGRACHMLVTSVTGHL 68
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F ++ W++ +P +LF APV K+ K I + L +EAR C LVLWLDCDREG
Sbjct: 69 MELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLDCDREG 128
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +EVI+ CT ++ + RARFS++ +++I +++ +L PN+ A AVDARQEI
Sbjct: 129 ENIAYEVIDVCTR---ANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQEI 185
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 186 DLRIGASFTRFQTMLLKDAF 205
>gi|68075963|ref|XP_679901.1| DNA topoisomerase III [Plasmodium berghei strain ANKA]
gi|56500744|emb|CAH93722.1| DNA topoisomerase III, putative [Plasmodium berghei]
Length = 674
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 9/212 (4%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M +KVL VAEKPS+A +I ++LS G+ +K+ ++ V FD + VTSV
Sbjct: 1 MGRIKVLNVAEKPSVASAIVSILSKGESNKKKSYSKYNPVFTFDYKMENETWSMFVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++WN ++P +LF A + K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE ICFEVI V + + K+HRA+FS+VTEKDI A+ NL PN+N A +VD R+
Sbjct: 121 REGE-ICFEVINAC--SVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRR 177
Query: 178 EIDLKVGVAFTRFQTT-YFQGKYGNLDSRFIS 208
EIDL++G FTRF T YF K D++ IS
Sbjct: 178 EIDLRMGSIFTRFMTIRYF--KLVQNDTKIIS 207
>gi|167390327|ref|XP_001739303.1| DNA topoisomerase 3-alpha [Entamoeba dispar SAW760]
gi|165897077|gb|EDR24345.1| DNA topoisomerase 3-alpha, putative [Entamoeba dispar SAW760]
Length = 607
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMF--LGSHAYIKVTSVVGHV 60
VL VAEKPS+A +I+ LS G+ ++ + EF+ F +G + VTSV GH+
Sbjct: 4 VLHVAEKPSVANAISYTLSRGQCQKTSGLSKYNSIFEFEKEFKNIGKCTHY-VTSVAGHL 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DF AY+ W + +P +LF AP+ K+ + +L A+ C LVLWLDCDREG
Sbjct: 63 KGIDFTTAYRSWGSCDPEELFTAPIEKSVPASMKKVELNLKNVAKKCQVLVLWLDCDREG 122
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FEVIE +VN ++ KV RA F+S+ +I+KA L PNR+ + AVD RQEID
Sbjct: 123 ENISFEVIEVCS-EVN-SKMKVWRAHFNSLVPDEIIKAYNTLTAPNRHMSEAVDVRQEID 180
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
L+ G AFTRFQTT + K L+ + +S
Sbjct: 181 LRTGAAFTRFQTTLLKNKSKALEGKVLS 208
>gi|414864981|tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 915
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEKPS+A ++A +LS +R ++ + EF+ G ++ VTSV GH+
Sbjct: 9 IRVLNVAEKPSVAKAVAEILSRRSAQSRAGRSQYNRIFEFNYAINGRACHMLVTSVTGHL 68
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F ++ W++ +P +LF APV K+ K I + L +EAR C LVLWLDCDREG
Sbjct: 69 MELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLDCDREG 128
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +EVI+ CT ++ + RARFS++ +++I +++ +L PN+ A AVDARQEI
Sbjct: 129 ENIAYEVIDVCT---RANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQEI 185
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + +
Sbjct: 186 DLRIGASFTRFQTMLLKDAF 205
>gi|156096432|ref|XP_001614250.1| DNA topoisomerase III alpha [Plasmodium vivax Sal-1]
gi|148803124|gb|EDL44523.1| DNA topoisomerase III alpha, putative [Plasmodium vivax]
Length = 666
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 5/198 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE-FDGMFLGSHAY--IKVTSVV 57
MA + VL VAEKPS+A +IA +LS GK+ +K+ ++ + F + H + VTSV
Sbjct: 1 MARIHVLNVAEKPSVASAIADILSRGKMEKKKSCSKYNPLFTFNYKRGHETWSMYVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++W ++P +LF A + N K I +L ++ C L+LWLDCD
Sbjct: 61 GHLTEQKFDDKYRNWVNTDPQELFDAEITIYVENDKKKIENNLKNYSKFCSLLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI T F +N K+ RA+FS+VT+KDI+ A+ NL PNRN A +VD R+
Sbjct: 121 REGEHICFEVIN-TCFAMN-REIKIKRAQFSAVTQKDIIHAINNLKYPNRNLAYSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTTYF 195
EIDL++G FTRF T +
Sbjct: 179 EIDLRMGSIFTRFLTIRY 196
>gi|170039894|ref|XP_001847754.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
gi|167863475|gb|EDS26858.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
Length = 992
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +++EFD G + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKNIAALLSRGASQRREGYSPYNKIYEFDYNLRGQQVKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F P+++ W++ NP LF APV K + I R L +E RGCG LV+W DCDREG
Sbjct: 61 LNFEFLPSFRGWHSCNPEQLFDAPVRKGCTESAEKIKRTLEREIRGCGALVIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+IE C + + KV RA+FS +T I +A+ NL P+ ++ AV+ R E+
Sbjct: 121 ENIGFEIIEVCRAVK---PQIKVLRAKFSEITAASIKRAVDNLAAPDELQSEAVNVRSEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL++G AFTRFQT Q
Sbjct: 178 DLRIGAAFTRFQTLRLQ 194
>gi|145535065|ref|XP_001453271.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420982|emb|CAK85874.1| unnamed protein product [Paramecium tetraurelia]
Length = 895
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 89/204 (43%), Positives = 127/204 (62%), Gaps = 6/204 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
++VL VAEKPS+A SIATVL+ T+ ++ +F+ A + +TSV GH+
Sbjct: 13 IRVLNVAEKPSVARSIATVLARDHTIEETKSPYNKLFKFNFKLGEQDAEMWMTSVTGHLK 72
Query: 62 RLDFPPAYQDWNASNPLDLFQ-APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L +P YQ W+ +PL + + A + S K + +L + A+ C L+LWLDCDREG
Sbjct: 73 NLKYPKQYQKWDKWDPLIILKDAEIENVISYEKRFLEENLQRFAKQCSQLILWLDCDREG 132
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FEV+E + + + KVHRA FS+VT DI KA+ NL +P+ N + +V ARQEID
Sbjct: 133 ENIAFEVLEVC--KATNPQIKVHRAHFSAVTYVDIKKALENLQQPDENLSNSVLARQEID 190
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDS 204
L++G +FTRFQT Q ++ NL S
Sbjct: 191 LRIGASFTRFQTLLLQQQF-NLSS 213
>gi|307103756|gb|EFN52014.1| hypothetical protein CHLNCDRAFT_27302 [Chlorella variabilis]
Length = 307
Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 123/200 (61%), Gaps = 11/200 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEK +A +++ +LS G+ + +++EF G A + TSV GH+
Sbjct: 3 MRVLNVAEKNKVAATVSQLLSNGRCRQSNSCATYCKIYEFPFTVAGRQADMVFTSVAGHL 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKA-ESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
L+F + W++ P +L+ A V K N K+ R+L Q AR C LVLWLDCDRE
Sbjct: 63 LELEFEGRVRGWHSCAPRELYDAQVFKGVPKNEKMK--RNLQQLARSCDWLVLWLDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FEV CT +VN R + RARFS++ D+ +AM NLV PN +EA AVDARQEI
Sbjct: 121 GENIAFEV--CT--EVN-PRLVIKRARFSALIYADVARAMANLVPPNEHEAQAVDARQEI 175
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTR QT Q K+
Sbjct: 176 DLRIGASFTRLQTLLLQNKF 195
>gi|260801483|ref|XP_002595625.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
gi|229280872|gb|EEN51637.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
Length = 346
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 123/204 (60%), Gaps = 7/204 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A +IA VLS G+ R+ ++ ++EF+ L + + +TSV GH+
Sbjct: 7 KVLNVAEKNDAAKAIADVLSNGRYRRREGFSKFNKIYEFEFNILNKQSSMSMTSVSGHLL 66
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF +YQ W++ P+ LF A V K + I R L +EAR C LV+W DCDREGE
Sbjct: 67 ELDFKGSYQKWHSCQPVALFDAGVEKHCPDQFKDIKRTLEREARQCQVLVIWTDCDREGE 126
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI EVI+ C + N +++RARFS T + I+ A NLV+P+ + AV+ R E+D
Sbjct: 127 NIGTEVIDVCKAVKPNI---RIYRARFSDFTPQSIISACCNLVQPDYRSSDAVNVRSELD 183
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDS 204
L++G AFTRFQT Q + N+ S
Sbjct: 184 LRIGAAFTRFQTLRLQKIFPNVLS 207
>gi|156381054|ref|XP_001632081.1| predicted protein [Nematostella vectensis]
gi|156219132|gb|EDO40018.1| predicted protein [Nematostella vectensis]
Length = 940
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 129/210 (61%), Gaps = 8/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEK A ++ ++S G+ R+ + +++EF+ L ++A + +TSV GH+
Sbjct: 1 MRVLNVAEKNDAAKELSRIMSRGQCTRREGQSRFNKIYEFNFNILNANARMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F AY+ W++ +PL LF APV K + I + L E RG L++W DCDREG
Sbjct: 61 MSLEFAIAYRKWSSCSPLSLFDAPVVKNVGEDYLPIKKTLECEVRGSQALIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI E+I+ CT R KV+RARFS +T + + +A NLV P+R ++ AVD R E+
Sbjct: 121 ENIGHEIIDVCTKVC---PRIKVYRARFSEITPQSVQRACANLVAPDRLQSEAVDVRMEL 177
Query: 180 DLKVGVAFTRFQTTYFQGKY-GNLDSRFIS 208
DL++G AFTRFQT Q + G L + IS
Sbjct: 178 DLRIGAAFTRFQTLRLQKVFPGFLSDQLIS 207
>gi|356516381|ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
Length = 913
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 122/202 (60%), Gaps = 9/202 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK----LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGH 59
+ VL VAEKP +A ++AT+LS + R ++ EF+ G ++ TSV GH
Sbjct: 1 MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L+F Y+ W++ +P DLF+APVHK K I R L +EAR C L+LWLDCD E
Sbjct: 61 LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGN-LVEPNRNEALAVDARQ 177
GENI +EVI+ CT + + RA FS++ ++DI A N L +P++ A AVD RQ
Sbjct: 121 GENIAYEVIDVCTAV---NPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQ 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
EIDL++G +FTRFQT + +
Sbjct: 178 EIDLRIGASFTRFQTMLMKDAF 199
>gi|440300574|gb|ELP93021.1| DNA topoisomerase 3-alpha, putative [Entamoeba invadens IP1]
Length = 611
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 6/195 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKV-TSVVGHVF 61
VL +AEKPS+A S+A LS GK + ++ +H+FD F +V TSV GH+
Sbjct: 5 VLHIAEKPSVAQSVAYTLSKGKSKKCQGKSKFNPIHKFDAEFRDKGMKNQVVTSVSGHLM 64
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F P +++W NP+DLF APV K + +L A+G LVLWLDCDREGE
Sbjct: 65 ELEFTPEFRNWGMCNPVDLFTAPVAKYVPSRSKETEANLKDVAKGADTLVLWLDCDREGE 124
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NI FEVI+ + + KV RA F+S+ +I +A L P++N + AVD RQE+DL
Sbjct: 125 NISFEVIDVC--ESVNKHLKVFRAHFNSLVPVEIARAYRTLTPPDKNLSDAVDIRQELDL 182
Query: 182 KVGVAFTRFQTTYFQ 196
+ G AFTRFQTT +
Sbjct: 183 RTGAAFTRFQTTLLK 197
>gi|70952526|ref|XP_745425.1| DNA topoisomerase III [Plasmodium chabaudi chabaudi]
gi|56525744|emb|CAH76018.1| DNA topoisomerase III, putative [Plasmodium chabaudi chabaudi]
Length = 675
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 94/212 (44%), Positives = 130/212 (61%), Gaps = 8/212 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M +KVL VAEKPS+A +I ++LS GK +K+ ++ V FD + VTSV
Sbjct: 1 MGRIKVLNVAEKPSVASAIVSILSKGKSNKKKSYSKYNPVFTFDYKMENETWSMFVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++WN ++P +LF A + K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDEKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI V + + K+HRA+FS+VTEKDI A+ NL PN+N A +VD R+
Sbjct: 121 REGEHICFEVINAC--SVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTT-YFQGKYGNLDSRFIS 208
EIDL++G FTRF T YF K D++ IS
Sbjct: 179 EIDLRMGSIFTRFMTIRYF--KLVQNDTKIIS 208
>gi|82914812|ref|XP_728858.1| DNA topoisomerase III [Plasmodium yoelii yoelii 17XNL]
gi|23485425|gb|EAA20423.1| DNA topoisomerase iii [Plasmodium yoelii yoelii]
Length = 677
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 94/212 (44%), Positives = 130/212 (61%), Gaps = 8/212 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M +KVL VAEKPS+A +I ++LS GK +K+ ++ V FD + VTSV
Sbjct: 1 MGRIKVLNVAEKPSVASAIVSILSKGKSNKKKSYSKYNPVFTFDYKMENETWSMFVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++WN ++P +LF A + K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI V + + K+HRA+FS+VTEKDI A+ NL PN+N A +VD R+
Sbjct: 121 REGEHICFEVINAC--SVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRR 178
Query: 178 EIDLKVGVAFTRFQTT-YFQGKYGNLDSRFIS 208
EIDL++G FTRF T YF K D++ IS
Sbjct: 179 EIDLRMGSIFTRFMTIRYF--KLVQNDTKIIS 208
>gi|325191457|emb|CCA26230.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2383
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191458|emb|CCA26231.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2417
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191452|emb|CCA26225.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2419
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191453|emb|CCA26226.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2414
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191461|emb|CCA26234.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2356
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191454|emb|CCA26227.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2412
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|195436636|ref|XP_002066263.1| GK18189 [Drosophila willistoni]
gi|194162348|gb|EDW77249.1| GK18189 [Drosophila willistoni]
Length = 1234
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 126/210 (60%), Gaps = 8/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +I+ +L+ G + R+ + +V +F+ G +A + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKTISRLLANGAEHRREGYSVYNKVFDFEAQVRGQNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L+F +Y++W +P LF AP+ K+ I R L +E RGC L++W DCDREG
Sbjct: 61 MQLEFQVSYRNWRTVDPRSLFDAPIKKSVGEKYAPIKRTLEREIRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+IE C G + N KV+RA FS +T + +A+ L EP++ ++ AVD R E+
Sbjct: 121 ENIGFEIIEVCRGIKPN---LKVYRASFSEITSAAVRRALQQLGEPDKRQSDAVDVRSEL 177
Query: 180 DLKVGVAFTRFQTTYFQGKYG-NLDSRFIS 208
DL+ G + TRFQT Q + N+ + IS
Sbjct: 178 DLRTGASITRFQTMRLQRLFPENIADKLIS 207
>gi|325191459|emb|CCA26232.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2392
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191455|emb|CCA26228.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2390
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191456|emb|CCA26229.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2387
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|325191460|emb|CCA26233.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2385
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A I+++LS G+ R ++ + EF + TSV+GH+
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNKRSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLME 87
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F P Y+ W++ +P +LF AP+ K N + I + L EAR LVLWLDCDREG
Sbjct: 88 LNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDREG 147
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FEV C ++R + RA+FS++ DI A+ NL N+N +LA DAR EI
Sbjct: 148 ENIAFEVKSICENV---NSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEI 204
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G AFTRFQT Q K+
Sbjct: 205 DLRIGAAFTRFQTMRLQQKF 224
>gi|432871570|ref|XP_004071982.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryzias latipes]
Length = 987
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK A I+ ++S G+ R+ ++ ++E++ G + + +TSV GH+
Sbjct: 53 RVLCVAEKNDAAKGISEIMSSGRARRREGMSKFNKIYEYEYFLFGQNVTVTMTSVSGHLL 112
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F +Q W++ NP+ LF A V K + + I R L +E R C LV+W DCDREGE
Sbjct: 113 ALEFKAPFQKWHSCNPVMLFDAEVEKYCPDNMIPIKRTLEKEVRQCQALVIWTDCDREGE 172
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI+ C + N +V RA+FS +T I +A L+EP+ N + AVD RQE+D
Sbjct: 173 NIGFEVIDVCKAVKPN---LQVFRAKFSEITPASIRRACETLIEPDANISDAVDVRQELD 229
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G +FTRFQT Q
Sbjct: 230 LRIGASFTRFQTLRLQ 245
>gi|384254048|gb|EIE27522.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 919
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 123/200 (61%), Gaps = 7/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLGSHAYIKVTSVVGH 59
L VL VAEK SIA ++ LS TR ++ + F G + TSV GH
Sbjct: 5 LTVLNVAEKNSIAKQVSAALSNNSA-TRGSTCSNYNPLFSFPYALNGMPCEMLFTSVAGH 63
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDFP A++ W++ +PL+L+ APV K K + R+L ++AR C LVLWLDCDRE
Sbjct: 64 LMELDFPEAFKKWHSCSPLELYGAPVLKCVPQDKKLVERNLKEQARKCQWLVLWLDCDRE 123
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FEVI+ + N R + RA+FS++ +++ +++ NL P+ N + AVDARQEI
Sbjct: 124 GENIAFEVIDVC-IKAN-PRLLIKRAKFSALVRRELERSVQNLGVPDENLSKAVDARQEI 181
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT Q K+
Sbjct: 182 DLRIGASFTRFQTLLLQEKF 201
>gi|399218372|emb|CCF75259.1| unnamed protein product [Babesia microti strain RI]
Length = 603
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 123/212 (58%), Gaps = 9/212 (4%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKL---YTRKASTEVHEFDGMFLGSHAYIKVTSVV 57
M+ L VL VAEKPS+A I +LS G + + V F L + TSV
Sbjct: 1 MSVLNVLNVAEKPSVAKGITNLLSNGSFKRETSHSKTNPVTSFRYNLLDRSCNMYFTSVR 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDF Y WN +P LF AP+ S I ++L + ++ C LVLWLDCD
Sbjct: 61 GHLTNLDFTKEYAKWNECSPDVLFTAPIRSFVSPNCKDIEKNLKEYSKICDWLVLWLDCD 120
Query: 118 REGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
REGE I +EVI+ C +V ++++RA FS+VT+ DI A NL PN+N ALAV+AR
Sbjct: 121 REGEAIAYEVIDSCASSRV----KEIYRAIFSAVTKFDIKNACRNLSRPNKNLALAVNAR 176
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
QEIDL++G FTRF T ++ + N D++ IS
Sbjct: 177 QEIDLRIGSVFTRFMTMRYKHRINN-DTKVIS 207
>gi|322801677|gb|EFZ22300.1| hypothetical protein SINV_07705 [Solenopsis invicta]
Length = 1052
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 130/225 (57%), Gaps = 16/225 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A +IA LS G R+ + ++ EF+ G + + +TSV GH+
Sbjct: 1 MKVLNVAEKHDAAKNIAGYLSNGASRKREGLSVYNKIFEFNVQLWGQNCQMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHK---AESNPKVHICRHLNQEARGCGHLVLWLDCD 117
DF AY+ W +PL LF APV K E+ K+ R L +E R C L++W DCD
Sbjct: 61 LGYDFTGAYRKWQGCSPLSLFDAPVSKECLGENYEKIK--RTLEREIRSCNTLIIWTDCD 118
Query: 118 REGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
REGENI FE+I+ C + N +V+RA+FS +T++ I +A+ L EP++ + AVD R
Sbjct: 119 REGENIGFEIIQVCKAVKSNI---RVYRAKFSEITKQSIERALQTLGEPDKAISDAVDVR 175
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY----GNLDSRFISLVFSSLFLI 217
E+DL++G AFTRFQT Q + GNL + S F +L +
Sbjct: 176 SELDLRIGAAFTRFQTLRLQKIFPNTLGNLLISYGSCQFPTLGFV 220
>gi|321463458|gb|EFX74474.1| hypothetical protein DAPPUDRAFT_324341 [Daphnia pulex]
Length = 1025
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEK A +IA +LS G+ R+ ++ ++EF+ + + VTSV GH+
Sbjct: 6 VLNVAEKNDAAKNIAELLSRGRANRREGRSKFNKIYEFEHNLFNQNVKMSVTSVSGHLLS 65
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y+ W NP+ LF+AP+HK + +I R L +E + +L++W DCDREGEN
Sbjct: 66 SDFVGNYKKWQGVNPVTLFEAPIHKFVAEDYQNIKRTLEEETKKSKYLIIWTDCDREGEN 125
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I +EVI C + N +V RA+FS +T + I +A+ NL PN+N + AVD R E+DL
Sbjct: 126 IGYEVITVCQAIKPNI---QVFRAKFSEITYQSIARALQNLGPPNKNVSDAVDVRIELDL 182
Query: 182 KVGVAFTRFQTTYFQGKY-GNLDSRFIS 208
++G AFTRFQT Q + G+L IS
Sbjct: 183 RIGAAFTRFQTLRLQKVFPGSLGQSLIS 210
>gi|198413663|ref|XP_002126376.1| PREDICTED: similar to topoisomerase (DNA) III alpha, partial [Ciona
intestinalis]
Length = 571
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
KVL VAEK A I+ +LSG + R ++ ++EF LG + + VTS+ GH+
Sbjct: 8 FKVLSVAEKNDAAKRISDILSGHQYQVRNGFSKYNKIYEFSYHMLGQNCAMSVTSLSGHL 67
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F Y+ W++ +PL LF V K + V I R L +E R LV+W DCDREG
Sbjct: 68 LNYNFAGIYKKWHSCHPLSLFDVEVEKIVTENMVDIKRTLEREVRNSQALVIWTDCDREG 127
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+I C + N V+RARFS +T++ I A NL +P++N + AVD RQE+
Sbjct: 128 ENIGFEIINICRNIKPNIP---VYRARFSEITDRSIKSACRNLQQPDQNTSDAVDVRQEL 184
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL++G AFTRFQT Q
Sbjct: 185 DLRIGAAFTRFQTLRLQ 201
>gi|332261726|ref|XP_003279918.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Nomascus
leucogenys]
Length = 1001
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP+R + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|350420688|ref|XP_003492591.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus impatiens]
Length = 1012
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 10/195 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A SIA LS G R+ + +++EF+ + + +TSV GH+
Sbjct: 1 MKVLNVAEKNDAAKSIAGYLSRGSSKRREGLSTYNKIYEFNSYLWNQNCEMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHK--AESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+F AY+ W +PL LF APV K +E N V I + L +E + CG L++W DCDR
Sbjct: 61 LNYEFVGAYRKWQGCHPLSLFDAPVIKQCSEEN-SVKIKKTLEREVQRCGALIIWTDCDR 119
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FE+I+ C + N ++RA+FS +T+ + +A+ NL EPN+ + AVD R
Sbjct: 120 EGENIGFEIIQVCRAIKPN---IHIYRAKFSEITQASVNRALQNLCEPNKAISDAVDVRS 176
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTRFQT
Sbjct: 177 ELDLRIGAAFTRFQT 191
>gi|242014828|ref|XP_002428087.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
gi|212512606|gb|EEB15349.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
Length = 901
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 125/210 (59%), Gaps = 8/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+ +L VAEK A +I+ LS G R++ + +++EF+ + + +TSV GH+
Sbjct: 1 MTILNVAEKNDAAKNISFFLSKGSARKRESLSVYNKIYEFEFKLFNQNCKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
FPP +++W+ ++P LF PV+K + +L E + C L++W DCDREG
Sbjct: 61 LNYCFPPTHKNWSTTDPSSLFTVPVNKFCAKENFKTQNNLKNEVKYCDTLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+I+ C + N K++RA+FS +T +++A+ NL PN++ + AVD R E+
Sbjct: 121 ENIGFEIIDVCKKVKPN---IKIYRAKFSEITSASVMRAINNLEMPNKSLSDAVDVRMEL 177
Query: 180 DLKVGVAFTRFQTTYFQGKY-GNLDSRFIS 208
DL++G AFTRFQ+ Y Q K+ N S +S
Sbjct: 178 DLRIGAAFTRFQSLYLQKKFPDNFKSTVVS 207
>gi|340724036|ref|XP_003400391.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus terrestris]
Length = 1043
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 10/195 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A SIA LS G R+ + +++EF+ + + +TSV GH+
Sbjct: 34 MKVLNVAEKNDAAKSIAGYLSRGCFKRREGLSPYNKIYEFNSYLWNQNCEMVMTSVSGHL 93
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHK--AESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+F AY+ W +PL LF AP+ K E N + I + L +E + CG L++W DCDR
Sbjct: 94 LSYEFVGAYRKWQGCHPLSLFDAPIIKQCPEEN-SIKIKKSLEREVQKCGALIIWTDCDR 152
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FE+I+ C + N +++RA+FS +T+ + +A+ NL EPN+ + AVD R
Sbjct: 153 EGENIGFEIIQVCHAIKSN---IRIYRAKFSEITQASVNRALQNLCEPNKAISDAVDVRS 209
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTRFQT
Sbjct: 210 ELDLRIGAAFTRFQT 224
>gi|118151044|ref|NP_001071443.1| DNA topoisomerase 3-alpha [Bos taurus]
gi|117306502|gb|AAI26548.1| Topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LSGG++ R+ + +++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +EA+ C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPS---LQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|296476590|tpg|DAA18705.1| TPA: topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LSGG++ R+ + +++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +EA+ C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPS---LQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|440913082|gb|ELR62586.1| DNA topoisomerase 3-alpha [Bos grunniens mutus]
Length = 1002
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LSGG++ R+ + +++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +EA+ C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPS---LQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|196002305|ref|XP_002111020.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
gi|190586971|gb|EDV27024.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
Length = 625
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
++L VAEK A S++ ++S G L ++ ++ + EFD L S + +TSV GH+
Sbjct: 4 RILNVAEKNDAAKSLSRIMSRGNLTKKEGLSKYNKIFEFDFNILNSSCRMVMTSVSGHLL 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+DF +Q WN+ P++LF+A V K + + I + L +E R C L++W D DREGE
Sbjct: 64 SMDFLSNFQKWNSCLPVELFEAQVQKFCTGTNIPIKKTLEREIRNCNTLIIWTDGDREGE 123
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI E+I C + R ++HRARFS +T + I++A NL P+ ++ AVD RQE+D
Sbjct: 124 NIGHEIISVCKAVK---PRIEIHRARFSEITYRSIMRACENLTRPDNLQSDAVDVRQELD 180
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 181 LRIGAAFTRFQTLRLQ 196
>gi|312381313|gb|EFR27087.1| hypothetical protein AND_06414 [Anopheles darlingi]
Length = 1456
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +I+ +LS G R+ + +++EFD G + +TSV GH+
Sbjct: 529 MKYLNVAEKNDAAKTISGLLSRGTSNRREGFSPYNKIYEFDYNLHGQSIKMVMTSVSGHL 588
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F P+++ W + +P DLF APV K+ I R L +E RGC L++W DCDREG
Sbjct: 589 LNHEFLPSFRGWQSCSPEDLFDAPVRKSCPESYDKIKRTLEREVRGCTALIIWTDCDREG 648
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI FE+IE C + + KV RA+FS +T I +A+ NL++P+ + AV+ R E+
Sbjct: 649 ENIGFEIIEVCKAIK---PQLKVLRAKFSEITGPSIKRAIENLIQPDARQNAAVNVRSEL 705
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL++G AFTR+QT Q
Sbjct: 706 DLRIGAAFTRYQTLRLQ 722
>gi|348511454|ref|XP_003443259.1| PREDICTED: DNA topoisomerase 3-alpha [Oreochromis niloticus]
Length = 1054
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 118/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK A I+ ++S G+ R+ ++ ++E++ G + + +TSV GH+
Sbjct: 52 RVLCVAEKNDAAKGISEIMSSGRANRREGMSKFNKIYEYEYHLFGQNVTVTMTSVSGHLL 111
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F +Q W++ NP+ LF A V K + + I R L +E R C LV+W DCDREGE
Sbjct: 112 GLEFKAPFQKWHSCNPVLLFDAEVEKYCPDNMLQIKRTLEKEVRQCQALVIWTDCDREGE 171
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I+ C + N +V RA+FS +T I +A L EP+ N + AVD RQE+D
Sbjct: 172 NIGFEIIDVCKAVKPN---LQVFRAKFSEITPNSIRRACETLTEPDANVSDAVDVRQELD 228
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G +FTRFQT Q
Sbjct: 229 LRIGASFTRFQTLRLQ 244
>gi|328710041|ref|XP_001950527.2| PREDICTED: DNA topoisomerase 3-alpha-like [Acyrthosiphon pisum]
Length = 915
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 123/196 (62%), Gaps = 5/196 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEK A +IA LSGG L R+ ++ ++EF+ F GS + + +TSV GH+
Sbjct: 34 MRVLNVAEKNDAAKNIAGHLSGGNLQRREGFSKFNKIYEFNHTFQGSPSTMIMTSVSGHL 93
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F +Y+ W + +PL+LF PV K N ++I + L +E R C LV+W D DREG
Sbjct: 94 LGYEFQGSYRSWTSCSPLELFHIPVVKECPNDFINIKKTLVREIRSCNTLVIWTDADREG 153
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FE+I+ +VN R +V+RA S +T + +A+ +L PN+N + AVD R E+D
Sbjct: 154 ENIGFEIIDVCR-EVN-PRIQVYRAILSEITRPSVQRAISSLGPPNKNISDAVDVRSELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTR+QT Q
Sbjct: 212 LRIGAAFTRYQTMRLQ 227
>gi|237834007|ref|XP_002366301.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
gi|211963965|gb|EEA99160.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
Length = 677
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGG--KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+ VL VAEKPS+A + +LSGG T+ VH+F+ + TSV GH+
Sbjct: 6 ITVLNVAEKPSVAKEASRLLSGGYQNAPTQSRFNPVHQFEFSLQNRSCTMLFTSVRGHLM 65
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF AYQ+WN P DL+ APV K S + ++L AR LVLWLDCDREGE
Sbjct: 66 SLDFASAYQNWNTIPPEDLYGAPVEKNISQDAGDVRKNLVDLARKAQWLVLWLDCDREGE 125
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NI FEV+ + +A V RA FS++T+ D+ +A L P+RN++ AVD R EIDL
Sbjct: 126 NIAFEVLSVC--REANASLNVFRAVFSALTKADLERACRTLQAPDRNQSDAVDTRSEIDL 183
Query: 182 KVGVAFTRFQTTYFQGK 198
++G +FTRF T ++ +
Sbjct: 184 RIGASFTRFLTMRYRSR 200
>gi|402898997|ref|XP_003912493.1| PREDICTED: DNA topoisomerase 3-alpha [Papio anubis]
Length = 998
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKTVKPN---LQVLRARFSEITPRAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|221486524|gb|EEE24785.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii GT1]
Length = 677
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 115/195 (58%), Gaps = 4/195 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGG--KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
VL VAEKPS+A + +LSGG T+ VH+F+ + TSV GH+ L
Sbjct: 8 VLNVAEKPSVAKEASRLLSGGYQNAPTQSRFNPVHQFEFSLQNRSCTMLFTSVRGHLMSL 67
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DF AYQ+WN P DL+ APV K S + ++L AR LVLWLDCDREGENI
Sbjct: 68 DFASAYQNWNTIPPEDLYGAPVEKNISQDAGDVRKNLVDLARKAQWLVLWLDCDREGENI 127
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
FEV+ + +A V RA FS++T+ D+ +A L P+RN++ AVD R EIDL++
Sbjct: 128 AFEVLSVC--REANASLNVFRAVFSALTKADLERACRTLQAPDRNQSDAVDTRSEIDLRI 185
Query: 184 GVAFTRFQTTYFQGK 198
G +FTRF T ++ +
Sbjct: 186 GASFTRFLTMRYRSR 200
>gi|10835218|ref|NP_004609.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|2501242|sp|Q13472.1|TOP3A_HUMAN RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|1292912|gb|AAB03694.1| DNA topoisomerase III [Homo sapiens]
gi|30353789|gb|AAH51748.1| Topoisomerase (DNA) III alpha [Homo sapiens]
gi|119576050|gb|EAW55646.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576052|gb|EAW55648.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576053|gb|EAW55649.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|158259313|dbj|BAF85615.1| unnamed protein product [Homo sapiens]
gi|311347058|gb|ADP90454.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347060|gb|ADP90455.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347062|gb|ADP90456.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347064|gb|ADP90457.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347066|gb|ADP90458.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347068|gb|ADP90459.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347070|gb|ADP90460.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347072|gb|ADP90461.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347074|gb|ADP90462.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347076|gb|ADP90463.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347078|gb|ADP90464.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347080|gb|ADP90465.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347082|gb|ADP90466.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347084|gb|ADP90467.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347086|gb|ADP90468.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347088|gb|ADP90469.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347090|gb|ADP90470.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347092|gb|ADP90471.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347094|gb|ADP90472.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347096|gb|ADP90473.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347098|gb|ADP90474.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347100|gb|ADP90475.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347102|gb|ADP90476.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347104|gb|ADP90477.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347106|gb|ADP90478.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347108|gb|ADP90479.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347110|gb|ADP90480.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347112|gb|ADP90481.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347114|gb|ADP90482.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347116|gb|ADP90483.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347118|gb|ADP90484.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347120|gb|ADP90485.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347122|gb|ADP90486.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347124|gb|ADP90487.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347126|gb|ADP90488.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347128|gb|ADP90489.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347130|gb|ADP90490.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347132|gb|ADP90491.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347134|gb|ADP90492.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347136|gb|ADP90493.1| DNA topoisomerase 3-alpha [Homo sapiens]
Length = 1001
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|426349252|ref|XP_004042226.1| PREDICTED: DNA topoisomerase 3-alpha [Gorilla gorilla gorilla]
Length = 976
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|397476895|ref|XP_003809826.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Pan paniscus]
Length = 1001
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|114668853|ref|XP_511323.2| PREDICTED: DNA topoisomerase 3-alpha isoform 3 [Pan troglodytes]
gi|410209052|gb|JAA01745.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209054|gb|JAA01746.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209056|gb|JAA01747.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258364|gb|JAA17149.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258366|gb|JAA17150.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258368|gb|JAA17151.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258370|gb|JAA17152.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293004|gb|JAA25102.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293006|gb|JAA25103.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410341687|gb|JAA39790.1| topoisomerase (DNA) III alpha [Pan troglodytes]
Length = 1001
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|1292913|gb|AAB03695.1| DNA topoisomerase III [Homo sapiens]
Length = 976
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 10 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 69
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 70 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 129
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 130 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 186
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 187 LRIGAAFTRFQTLRLQ 202
>gi|307201913|gb|EFN81542.1| DNA topoisomerase 3-alpha [Harpegnathos saltator]
Length = 1049
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 6/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A +IA LS G R+ + ++ EF+ G + + +TSV GH+
Sbjct: 1 MKVLSVAEKHDAAKNIAAFLSRGTSRKREGLSVYNKIFEFNVQLWGQNCQMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
+F +Y+ W +PL LF APV K S+ + I + L +E R C L++W DCDRE
Sbjct: 61 LGFEFTGSYRKWQGCHPLSLFDAPVFKQCSDESYIKIKKTLEREIRSCNALIIWTDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FE+I+ QV +++RA+FS +T++ I +A+ L EP++ + AVD R E+
Sbjct: 121 GENIGFEIIQVC--QVIKPNIRIYRAKFSEITKQSIERALQTLGEPDKAMSDAVDVRSEL 178
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL++G AFTRFQT Q
Sbjct: 179 DLRIGAAFTRFQTLRLQ 195
>gi|301612786|ref|XP_002935889.1| PREDICTED: DNA topoisomerase 3-alpha [Xenopus (Silurana)
tropicalis]
Length = 1021
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 126/209 (60%), Gaps = 8/209 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA ++S ++ R+ ++ ++E++ G + +TSV GH+
Sbjct: 40 KVLCVAEKNDAAKGIADLMSNSRMRRREGFSKFNKIYEYEYHLFGKDVTVVMTSVSGHLL 99
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF + W++ NP+ LF+A V K + V+I R L +E R C L++W DCDREGE
Sbjct: 100 ALDFQDHMKKWHSCNPVSLFEAEVQKYCPDDFVNIKRTLEREVRQCQALIIWTDCDREGE 159
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + I A +LV+P++N + AVD R E+D
Sbjct: 160 NIGFEIIHVCKSVKPN---LQVFRARFSEITPRSIRMACEHLVQPDQNISDAVDVRMELD 216
Query: 181 LKVGVAFTRFQTTYFQGKYGN-LDSRFIS 208
L++G AFTRFQT Q + + L ++ IS
Sbjct: 217 LRIGAAFTRFQTLRLQKMFPSVLSNQLIS 245
>gi|401409598|ref|XP_003884247.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
gi|325118665|emb|CBZ54216.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
Length = 870
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 6/198 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS--TEVHEFDGMFLGSHAYIKVTSVVGHVF 61
L VL VAEKPS+A + +L+G S VH+F+ + TSV GH+
Sbjct: 6 LTVLNVAEKPSVAKEASRLLAGAYQNAPSQSRFNPVHQFEFSLQNRSCTMLFTSVRGHLM 65
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F AYQ+WN + P DL+ APV K+ S + ++L A+ LVLWLDCDREGE
Sbjct: 66 SLEFASAYQNWNTTPPEDLYSAPVEKSISQDAGDVQKNLVDLAKKAQWLVLWLDCDREGE 125
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEV+ C+ ++R KV RA FS++T+ D+ +A +L P+RN++ AVD R EID
Sbjct: 126 NIAFEVLSVCSK---ANSRLKVFRAVFSALTKADLERACRSLQAPDRNQSDAVDTRSEID 182
Query: 181 LKVGVAFTRFQTTYFQGK 198
L++G +FTRF T ++ +
Sbjct: 183 LRIGASFTRFLTMRYRTR 200
>gi|292611936|ref|XP_688695.4| PREDICTED: DNA topoisomerase 3-alpha [Danio rerio]
Length = 998
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA ++S G+ R+ + +++E++ G + + +TSV GH+
Sbjct: 32 KVLCVAEKNDAAKGIAEIMSNGRSRRREGCSVYNKIYEYEYNLFGQNVTVNMTSVSGHLL 91
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F +Q W++ +P+ LF A V K + I R L +E R C L++W DCDREGE
Sbjct: 92 ALEFKAPFQKWHSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDREGE 151
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I+ C + N +V RARFS +T I +A L EP+ N + AVD RQE+D
Sbjct: 152 NIGFEIIDVCKAVKPNI---QVFRARFSEITPNSIRRACETLTEPDINVSDAVDVRQELD 208
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G +FTRFQT Q
Sbjct: 209 LRIGASFTRFQTLRLQ 224
>gi|402225468|gb|EJU05529.1| prokaryotic type I DNA topoisomerase [Dacryopinax sp. DJM-731 SS1]
Length = 866
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 3/206 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+++L VAEKPSIA +I+ +LSGG+ TR + +D + A I VTSV GH+
Sbjct: 1 MEILCVAEKPSIARAISQILSGGQSTTRDSPNRFTKNYDFYYDELRAEITVTSVAGHLME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y+ W + +P DLF AP+ A I R+L EARG L++W DCDREGE+
Sbjct: 61 SDFSDDYRRWESCDPADLFDAPIITAVRKDGGPIARNLEIEARGKNMLMIWTDCDREGEH 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I EV + +AR +V RARF+++ + I A + VE +R ++ AV+AR ++DL+
Sbjct: 121 IGSEVASVC--RKTNARIEVKRARFNAIIPQQIHHAARHPVELDRRQSDAVEARIQLDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
+G AFTR QT Q + +L + IS
Sbjct: 179 LGAAFTRMQTKMLQNQVPDLQRKMIS 204
>gi|417405552|gb|JAA49485.1| Putative dna topoisomerase iii beta [Desmodus rotundus]
Length = 999
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + +V RARFS +T + I A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPT---LQVLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|297272081|ref|XP_001095437.2| PREDICTED: DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 976
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKTVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|290980003|ref|XP_002672722.1| predicted protein [Naegleria gruberi]
gi|284086301|gb|EFC39978.1| predicted protein [Naegleria gruberi]
Length = 1015
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 10/213 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEKP A IAT+LS GK R+ ++ + EF+ G + VTSV+GH+
Sbjct: 23 KVLCVAEKPEAAKQIATILSAGKFQRREGKSKFNKIFEFEYRMNGVVVTMSVTSVLGHLM 82
Query: 62 RLDFPPAYQDWNASNPLDLFQ--APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
L F P + W + +P+ L PV + + I ++L QEAR L+LWLDCDRE
Sbjct: 83 ELGFDPKLKSWTSCDPITLMDPATPVFRNVPEKNLEIQQNLEQEARYATKLLLWLDCDRE 142
Query: 120 GENICFEVIECTGFQVNDA----RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
GENI FEVIE +VN + + RARFS T I +A+ NL PN +++AVD
Sbjct: 143 GENIAFEVIEVCK-KVNRSLSIENDSILRARFSEFTAAAINRAIRNLERPNVLDSMAVDT 201
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
RQE+DL++G +FTRFQ+ + K+ + + +IS
Sbjct: 202 RQELDLRIGASFTRFQSLRLKKKFQGITADYIS 234
>gi|395836299|ref|XP_003791095.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha [Otolemur
garnettii]
Length = 1008
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAKIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + + A NL EP+ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPS---LQVLRARFSEITPRAVRMACENLTEPDERVSSAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|336371414|gb|EGN99753.1| hypothetical protein SERLA73DRAFT_52441 [Serpula lacrymans var.
lacrymans S7.3]
Length = 875
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 5/204 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI+ +LSGG+ TR+ + + + FD + ++A+ VTSV GH+
Sbjct: 1 MRVLCVAEKPSIARSISQILSGGRFETRQTTNKYIKNFDFDYPQTNAHFTVTSVSGHLLT 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFP + W + +P LF APV I R+L EAR L++W DCDREGEN
Sbjct: 61 YDFPDTCRSWKSCDPFYLFDAPVQSKVPTDSKSIERNLMSEARSANTLMIWTDCDREGEN 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I EV + C + N V RARFS++ + I +A + +E + +A AV+AR +DL
Sbjct: 121 IGHEVAKVCQKARPNIV---VKRARFSAIIPQQIHRAAQHPIELDLAQADAVEARIILDL 177
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSR 205
++G AFTR QT Q + L+ +
Sbjct: 178 RIGAAFTRMQTLALQSHFAQLNDK 201
>gi|383412619|gb|AFH29523.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKTVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|380789899|gb|AFE66825.1| DNA topoisomerase 3-alpha [Macaca mulatta]
gi|380789901|gb|AFE66826.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKTVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|355568310|gb|EHH24591.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKTVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|195345123|ref|XP_002039125.1| GM17356 [Drosophila sechellia]
gi|194134255|gb|EDW55771.1| GM17356 [Drosophila sechellia]
Length = 1251
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G + R+ + +V +F+ + G +A + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLSNGAAHRREGYSVYNKVFDFEALVRGKNAKMVMTSVSGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K S I R L +E RGC L++W DCDREG
Sbjct: 61 MQLAFQVSYKNWRTVDPRSLFDAPVKKGVSADYEPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIDVCRAIKPNIP---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|301775497|ref|XP_002923167.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Ailuropoda melanoleuca]
Length = 959
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYRLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPS---LPVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|73956193|ref|XP_546656.2| PREDICTED: DNA topoisomerase 3-alpha [Canis lupus familiaris]
Length = 989
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPN---LQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|158299059|ref|XP_319175.3| AGAP010028-PA [Anopheles gambiae str. PEST]
gi|157014186|gb|EAA13910.3| AGAP010028-PA [Anopheles gambiae str. PEST]
Length = 1025
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVG 58
A +K L VAEK A +IA +LS G R+ + +++EF G + +TSV G
Sbjct: 27 ANMKYLNVAEKNDAAKTIAGLLSRGSSQRREGYSPYNKIYEFSYNLHGQSIQMIMTSVSG 86
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +F P+++ W++ +P DLF APV K I + L +E RGC L++W DCDR
Sbjct: 87 HLLTHEFLPSFRGWHSCSPEDLFDAPVRKNCPEQYEKIKKTLEREVRGCSALIIWTDCDR 146
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI +E+IE C + + +V RA+FS +T I +A+ NLV+P+ + AV+ R
Sbjct: 147 EGENIGYEIIEVCRAVK---PQLRVFRAKFSEITAPSIKRAIENLVQPDARQNDAVNVRS 203
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
E+DL++G AFTRFQT Q +
Sbjct: 204 ELDLRIGAAFTRFQTLRLQKSF 225
>gi|351707720|gb|EHB10639.1| DNA topoisomerase 3-alpha [Heterocephalus glaber]
Length = 991
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF+A + K + I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMRFRKWHSCNPLVLFEAEIEKYCPENFIDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPS---LQVLRARFSEITPGAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|348560295|ref|XP_003465949.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cavia porcellus]
Length = 1002
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF+A + K + I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWHSCNPLVLFEAGIEKYCPENFIDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPS---LQVLRARFSEITPHAVRTACQNLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|307184421|gb|EFN70830.1| DNA topoisomerase 3-alpha [Camponotus floridanus]
Length = 1044
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A SIA LS G R+ + ++ EF+ + + +TSV GH+
Sbjct: 1 MKVLNVAEKHDAAKSIAAHLSHGTSRKREGLSVYNKIFEFNVQLWNQNCQMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
+F AY+ W +PL LF APV K S + I + L +E + C L++W DCDRE
Sbjct: 61 LGYEFTGAYRKWQGCHPLSLFDAPVSKQCSEENYIKIKKTLEREIKSCNALIIWTDCDRE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I+ C + N +V+RA+FS +T++ I +A+ L EP++ + AVD R E
Sbjct: 121 GENIGFEIIQVCQTVKPN---IRVYRAKFSEITKQSIERALSTLGEPDKATSDAVDVRSE 177
Query: 179 IDLKVGVAFTRFQTTYFQGKYGN 201
+DL++G AFTRFQT Q + N
Sbjct: 178 LDLRIGAAFTRFQTLRLQKVFPN 200
>gi|195119033|ref|XP_002004036.1| GI18230 [Drosophila mojavensis]
gi|193914611|gb|EDW13478.1| GI18230 [Drosophila mojavensis]
Length = 1279
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 122/210 (58%), Gaps = 8/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V++F+ G +A + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVYDFEAPVRGRNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+F +Y++W +P LF AP+ K S + I R L +E R C L++W DCDREG
Sbjct: 61 MELEFLQSYRNWRNVDPRSLFDAPIRKTVSENFLPIKRTLEREVRSCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+IE C + N VHRA FS +T + +A+ L P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIEVCRAIKPN---LTVHRATFSEITSVAVRRALQQLGLPDKRQSDAVDVRSEL 177
Query: 180 DLKVGVAFTRFQTTYFQGKY-GNLDSRFIS 208
DL+ G A TRFQT Q + N+ + IS
Sbjct: 178 DLRTGAAITRFQTMRLQRLFPANIADKLIS 207
>gi|431914498|gb|ELK15748.1| DNA topoisomerase 3-alpha [Pteropus alecto]
Length = 1007
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVTGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPT---LQVLRARFSEITPRAVRMACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|194761190|ref|XP_001962812.1| GF14242 [Drosophila ananassae]
gi|190616509|gb|EDV32033.1| GF14242 [Drosophila ananassae]
Length = 1209
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +I+ +LS G R+ + +V++F+ + GS++ + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTISGLLSNGTARRREGYSVYNKVYDFEAVVRGSNSKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L+F ++++W +P LF APV K+ I R L +E RGC L++W DCDREG
Sbjct: 61 MQLEFLVSFRNWRNVDPGSLFDAPVRKSVGKDYEPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIDVCRAIKPNIT---VYRANFSEITTVAVRRALQQLGQPDKRQSDAVDVRSEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT FQ
Sbjct: 178 DLRTGAAITRFQTMRFQ 194
>gi|195031343|ref|XP_001988332.1| GH11108 [Drosophila grimshawi]
gi|193904332|gb|EDW03199.1| GH11108 [Drosophila grimshawi]
Length = 1269
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LSGG R+ + +V++F+ G +A + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSGGSANRREGYSVYNKVYDFEAQVRGQNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
++DF +Y++W +P LF AP+ K I R L +E RGC L++W DCDREG
Sbjct: 61 MQVDFLASYRNWLNVDPRSLFDAPIRKTVGENYEPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I C + + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIINVCRAIKPS---LTVYRASFSEITTASVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|195397674|ref|XP_002057453.1| GJ18138 [Drosophila virilis]
gi|194141107|gb|EDW57526.1| GJ18138 [Drosophila virilis]
Length = 1355
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G + R+ + +V++F+ G +A + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGSAHRREGYSVYNKVYDFEAQVRGRNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L+F +Y++W +P LF AP+ K+ I R L +E RGC L++W DCDREG
Sbjct: 61 MQLEFLVSYRNWRNVDPRSLFDAPIRKSVGENYEPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIDVCRAIKPN---LTVYRASFSEITTTAVRRALLQLGQPDKRQSDAVDVRSEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTLRLQ 194
>gi|428186174|gb|EKX55025.1| hypothetical protein GUITHDRAFT_156833 [Guillardia theta CCMP2712]
Length = 652
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVV 57
M+ +VL VAEKPS+A +A +LS G T EF G + VTSV
Sbjct: 1 MSADRVLCVAEKPSVAKELAAILSQGHAQAFNTHSQYNRKFEFSYELDGRPCTLVVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNP--KVHICRHLNQEARGCGHLVLWLD 115
GH+ DF +++ W+ P+ L + + P K + R+L +E R CG LV +LD
Sbjct: 61 GHLMERDFDESHRKWHTCEPIQLLDPSIQVIKMIPQDKKGLERNLLEEGRRCGQLVCFLD 120
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGENI +EVIE Q + R +V RA FS++ +DI +AM L PN++ + AV+A
Sbjct: 121 CDREGENISYEVIEIC--QKANPRIRVRRAHFSALIPRDIHRAMRTLTLPNQSLSEAVEA 178
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R EIDL++G AFTRFQT ++ L + +S
Sbjct: 179 RSEIDLRLGAAFTRFQTMVLGKRFEQLSDKLLS 211
>gi|145511830|ref|XP_001441837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409098|emb|CAK74440.1| unnamed protein product [Paramecium tetraurelia]
Length = 947
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+KVL VAEKPS+A SIA VL+ T+ ++ +F+ F + +TSV GH+
Sbjct: 13 IKVLNVAEKPSVARSIANVLARDHTVEETQSPYNKLFKFNFKFGDQEVEMWITSVTGHLK 72
Query: 62 RLDFPPAYQDWNASNPLDLFQ-APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L +P YQ W+ +P+ + + A + N K + +L Q AR C L+LWLDCDREG
Sbjct: 73 SLRYPKQYQKWDQWDPIIILKDAEIENIIPNEKRFLEGNLKQFARECSQLILWLDCDREG 132
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FEV+E + ++ + +VHRA FS+VT DI KA+ NL +P+ N + +V ARQEID
Sbjct: 133 ENIAFEVLEVC--KDSNPQIQVHRAHFSAVTYIDIKKALDNLKQPDENLSNSVLARQEID 190
Query: 181 LKVGVAFTR 189
L++G +FTR
Sbjct: 191 LRIGASFTR 199
>gi|71756203|ref|XP_829016.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834402|gb|EAN79904.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583728|gb|ABP01566.1| topoisomerase IIIalpha [Trypanosoma brucei brucei]
gi|261334956|emb|CBH17950.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 918
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 9/199 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A IAT+LSGG T ++ + V EF+ F G + TSV GH+
Sbjct: 5 LNVAEKPSVAREIATILSGGNQRTIRSHSIYNPVFEFN--FEGK--TMICTSVSGHLMES 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFPP W + +DLF K + I ++L + R L LW+DCDREGENI
Sbjct: 61 DFPPQAAGWASFPIIDLFTLGTVKRVRSDLSEIQKNLRELGRRATTLALWMDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVI+ Q + + RA FS++T++DIL AM NL PNR + AV+ARQE+DL++
Sbjct: 121 CFEVIDVV--QKEHSSISICRAHFSALTKRDILGAMRNLKAPNRALSEAVEARQELDLRL 178
Query: 184 GVAFTRFQTTYFQGKYGNL 202
G FTRFQT F ++ N
Sbjct: 179 GAVFTRFQTLKFCSQFKNF 197
>gi|338711250|ref|XP_001918241.2| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Equus caballus]
Length = 987
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LS G+ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 15 KILCVAEKNDAAKEIADLLSDGRARRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 74
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 75 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 134
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 135 NIGFEIIHVCKAVKPS---LQVLRARFSEITPRAVRTACENLTEPDQRVSDAVDVRQELD 191
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 192 LRIGAAFTRFQTLRLQ 207
>gi|410980097|ref|XP_003996416.1| PREDICTED: DNA topoisomerase 3-alpha [Felis catus]
Length = 987
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + V RARFS +T + + A NL EP+ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPS---LPVLRARFSEITPRAVQTACENLTEPDSRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|354467838|ref|XP_003496375.1| PREDICTED: DNA topoisomerase 3-alpha [Cricetulus griseus]
gi|344245173|gb|EGW01277.1| DNA topoisomerase 3-alpha [Cricetulus griseus]
Length = 1004
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|403411970|emb|CCL98670.1| predicted protein [Fibroporia radiculosa]
Length = 929
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 5/207 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR + ++D + +++ +T+V GH+
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGQFTTRSTGCPYIKDYDFNYPQTNSLFTITAVTGHLLD 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF AY W++ +P LF+AP+ + I ++L EA+ L++W DCDREGEN
Sbjct: 61 YDFSLAYSKWSSCDPFQLFEAPIETSVKKDSKAIAQNLTNEAKRAQTLMIWTDCDREGEN 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+ + C Q N + RARFS++ + I A + V N +A AV+AR +DL
Sbjct: 121 IGSEIAQICRRAQRNIT---IKRARFSAIIPQQIHNAAQHPVNLNMAQANAVEARIHLDL 177
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+VG AFTR QT Q ++ NL IS
Sbjct: 178 RVGSAFTRLQTLNLQRRFENLKDDIIS 204
>gi|74216779|dbj|BAE37792.1| unnamed protein product [Mus musculus]
Length = 694
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|302832397|ref|XP_002947763.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
gi|300267111|gb|EFJ51296.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
Length = 936
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 6/200 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKV-TSVVGH 59
++VL VAEKPS+A ++ +LS G + + + EF+ + H + V TSV GH
Sbjct: 3 IRVLNVAEKPSVAKEVSRILSNGSARSSRGPARFNPIWEFNYSNVEGHPAVMVFTSVAGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ ++FP Y+ W+ + +DL+ PV K + + R L Q +R C LVLWLDCDRE
Sbjct: 63 LMEVEFPDGYRKWHGCSDVDLYSCPVDKRVPQDRTDLKRQLEQLSRQCQWLVLWLDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FEV+ + + R + RARFS++ +++ +AM L +PN N+A AVDARQEI
Sbjct: 123 GENISFEVMAVC--RAANPRLVIRRARFSALIPRELQRAMATLGQPNANDAAAVDARQEI 180
Query: 180 DLKVGVAFTRFQTTYFQGKY 199
DL++G +FTRFQT + ++
Sbjct: 181 DLRIGASFTRFQTKQLRDRF 200
>gi|198473327|ref|XP_001356254.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
gi|198139406|gb|EAL33317.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
Length = 1178
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + ++++F+ G +A + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAANRREGYSVYNKIYDFEAPVRGQNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L+F +Y++W +P LF APV K+ + I R L +E RGC L++W DCDREG
Sbjct: 61 MQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I C + N ++RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIISVCRAIKPN---LTIYRASFSEITTIAVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|74140438|dbj|BAE42369.1| unnamed protein product [Mus musculus]
gi|74213102|dbj|BAE41691.1| unnamed protein product [Mus musculus]
Length = 773
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 10 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 69
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 70 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 129
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 130 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 186
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 187 LRIGAAFTRFQTLRLQ 202
>gi|195484485|ref|XP_002090715.1| GE13263 [Drosophila yakuba]
gi|194176816|gb|EDW90427.1| GE13263 [Drosophila yakuba]
Length = 1229
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V +F+ G +A + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLSNGAARRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K S+ I R L +E RGC L++W DCDREG
Sbjct: 61 MQLAFQVSYKNWKTVDPRSLFDAPVKKRVSSDYEPIKRTLEREVRGCQGLIVWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIDVCRAIKPNIS---VYRATFSEITSVAVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|71894753|ref|NP_001025807.1| DNA topoisomerase 3-alpha isoform 1 [Gallus gallus]
gi|66796185|dbj|BAD99110.1| topoisomerase III alpha [Gallus gallus]
Length = 1020
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E+D G + + +TSV GH+
Sbjct: 37 KVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K V I R L +E + C LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + +A NL +P++ + AV+ RQE+D
Sbjct: 157 NIGFEIIHVCKAVKPN---LQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELD 213
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 214 LRIGAAFTRFQTLRLQ 229
>gi|326929014|ref|XP_003210667.1| PREDICTED: DNA topoisomerase 3-alpha-like [Meleagris gallopavo]
Length = 1020
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E+D G + + +TSV GH+
Sbjct: 37 KVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K V I R L +E + C LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + +A NL +P++ + AV+ RQE+D
Sbjct: 157 NIGFEIIHVCKAVKPN---LQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELD 213
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 214 LRIGAAFTRFQTLRLQ 229
>gi|145345003|ref|XP_001417013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577239|gb|ABO95306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 641
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 11/199 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEKPS+A I+ VLS G+ R+ ++ +V EF G + TSV GH+
Sbjct: 13 RVLNVAEKPSVAKEISRVLSNGRASAREGTSRYNKVWEFPYEVRGRRVTMVFTSVTGHLS 72
Query: 62 RLDFPP-AYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+F ++ WN +P +L A V K K + ++ +EARGC ++LWLDCDRE
Sbjct: 73 NFEFADDRHRRWNGVDPRELLVNAAVAKRVPEDKRQVADNVKREARGCDSVILWLDCDRE 132
Query: 120 GENICFEVIECTGFQVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GENI FEV+ +A R + RARFS+++ D +A+ NLVEPN++E+ AVD R
Sbjct: 133 GENIAFEVLAA----CREANRGIAAFRARFSALSRGDADRALTNLVEPNQHESKAVDMRM 188
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
E+DL++G AFTRF T Q
Sbjct: 189 ELDLRLGAAFTRFNTLALQ 207
>gi|195580189|ref|XP_002079938.1| GD24215 [Drosophila simulans]
gi|194191947|gb|EDX05523.1| GD24215 [Drosophila simulans]
Length = 857
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G + R+ + +V +F+ + G +A + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLSNGAAHRREGYSVYNKVFDFEALVRGKNAKMVMTSVSGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K I R L +E RGC L++W DCDREG
Sbjct: 61 MQLAFQVSYKNWRTVDPRSLFDAPVKKGVGADYEPIKRTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIIDVCRAIKPNIP---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|449678511|ref|XP_002155556.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 843
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 121/198 (61%), Gaps = 13/198 (6%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIK--VTSVVGH 59
KVL+VAEKPS+A IA LSGG TR+ + ++ EF F + K VTSVVGH
Sbjct: 39 KVLIVAEKPSVAKMIAEQLSGGHFRTRRGKSRANQIFEFIKWFGPAQQKCKLMVTSVVGH 98
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHK--AESNPKVHICRHLNQEARGCGHLVLWLDCD 117
+F L F D + S LF A V K A+S K++I HL + + +L LWLDCD
Sbjct: 99 IFGLGFA-GRPDRDISK---LFDASVEKQLADSTKKLNIVEHLQELGQESEYLFLWLDCD 154
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENI FEVI T + V+RARFS++T+ ++ +A N V P++ A++VDARQ
Sbjct: 155 REGENIGFEVISLTQQWI--PYDNVYRARFSALTKTELSQAYDNPVRPDKYAAMSVDARQ 212
Query: 178 EIDLKVGVAFTRFQTTYF 195
E+DLK+GVAF+R T F
Sbjct: 213 ELDLKIGVAFSRLMTRAF 230
>gi|74186931|dbj|BAE20515.1| unnamed protein product [Mus musculus]
Length = 954
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|157116652|ref|XP_001658595.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108876378|gb|EAT40603.1| AAEL007683-PA [Aedes aegypti]
Length = 1021
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 7/199 (3%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVG 58
A +K L VAEK A +IA +LS G R+ + +++EF G + +TSV G
Sbjct: 23 AVMKYLNVAEKNDAAKNIAGLLSRGSSQRREGYSPYNKIYEFSYNIRGQPVQMVMTSVSG 82
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +F P+++ W++ NP LF APV K+ + I + L +E RGC LV+W DCDR
Sbjct: 83 HLLNYEFLPSFRGWHSCNPEQLFDAPVRKSCTENMGKIKQTLEREVRGCQTLVIWTDCDR 142
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FE+IE C + +V RA+FS +T + +A+ NL P+ ++ AV+ R
Sbjct: 143 EGENIGFEIIEVCRAIKPGI---RVLRAKFSEITAASVKRAVENLAAPDELQSEAVNVRS 199
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
E+DL++G AFTRFQT Q
Sbjct: 200 ELDLRIGAAFTRFQTLRLQ 218
>gi|7960302|gb|AAF71288.1|AF255733_1 DNA topoisomerase III alpha [Drosophila melanogaster]
Length = 1250
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V +F+ G +A + +TSV GH+
Sbjct: 26 MKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHM 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K + I R L +E RGC L++W DCDREG
Sbjct: 86 MQLAFQVSYKNWRTVDPRSLFDAPVEKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 146 ENIGYEIIDVCRAIKPNIS---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 202
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 203 DLRTGAAITRFQTMRLQ 219
>gi|6678403|ref|NP_033436.1| DNA topoisomerase 3-alpha [Mus musculus]
gi|6686029|sp|O70157.1|TOP3A_MOUSE RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|3061308|dbj|BAA25662.1| topoisomerase III [Mus musculus]
gi|71043442|gb|AAH99689.1| Topoisomerase (DNA) III alpha [Mus musculus]
Length = 1003
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|24585251|ref|NP_523602.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|33860232|sp|Q9NG98.2|TOP3A_DROME RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|22946848|gb|AAF53813.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|51092196|gb|AAT94511.1| LD04601p [Drosophila melanogaster]
gi|220950368|gb|ACL87727.1| Top3alpha-PA [synthetic construct]
Length = 1250
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V +F+ G +A + +TSV GH+
Sbjct: 26 MKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHM 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K + I R L +E RGC L++W DCDREG
Sbjct: 86 MQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 146 ENIGYEIIDVCRAIKPNIS---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 202
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 203 DLRTGAAITRFQTMRLQ 219
>gi|147906574|ref|NP_001085699.1| topoisomerase (DNA) III alpha [Xenopus laevis]
gi|49115195|gb|AAH73221.1| MGC80537 protein [Xenopus laevis]
Length = 1022
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 118/196 (60%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA ++S ++ R+ ++ ++E++ G + +TSV GH+
Sbjct: 40 KVLCVAEKNDAAKGIADLMSNSRMRRREGFSKFNKIYEYEYHLFGKDVTVVMTSVSGHLL 99
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F + W++ NP+ LF+A V K + V+I R L +E R C L++W DCDREGE
Sbjct: 100 ALEFMDHMKKWHSCNPVSLFEAEVQKYCPDDFVNIKRTLEREVRQCQALIIWTDCDREGE 159
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + I A +LV+P++N AVD R E+D
Sbjct: 160 NIGFEIIHVCKSVKPN---LQVFRARFSEITPRSIRMACEHLVQPDQNINDAVDVRTELD 216
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 217 LRIGAAFTRFQTLRLQ 232
>gi|166240582|ref|XP_643754.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
gi|74818660|sp|Q8T2T7.1|TOP3_DICDI RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|165988670|gb|EAL69909.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
Length = 828
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 10/198 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH---EFDGMFLG-SHAYIKVTSVVGHV 60
++L VAEKPS A IA +LS + R+ ++ + +F L + + TSV GH+
Sbjct: 4 RILNVAEKPSAAKEIAAILSNKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+D ++ W + +P+ LF AP+ K + K + + L +E + L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 121 ENICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ENI FEV+E +A++K +RA FS++ ++I +A NL +PN +++AVD R E
Sbjct: 124 ENIAFEVLEV----CKNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRME 179
Query: 179 IDLKVGVAFTRFQTTYFQ 196
IDL++G AFTRFQT Y +
Sbjct: 180 IDLRIGAAFTRFQTLYLK 197
>gi|195164694|ref|XP_002023181.1| GL21219 [Drosophila persimilis]
gi|194105266|gb|EDW27309.1| GL21219 [Drosophila persimilis]
Length = 1178
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + ++++F+ G +A + +TSV GH+
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAANRREGYSVYNKIYDFEAPVRGQNAKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L+F +Y++W +P LF APV K+ + I + L +E RGC L++W DCDREG
Sbjct: 61 MQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPIKKTLEREVRGCQGLIIWTDCDREG 120
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I C + N ++RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 121 ENIGYEIISVCRAIKPN---LTIYRASFSEITTIAVRRALQQLGQPDKRQSDAVDVRTEL 177
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 178 DLRTGAAITRFQTMRLQ 194
>gi|327287266|ref|XP_003228350.1| PREDICTED: DNA topoisomerase 3-alpha-like [Anolis carolinensis]
Length = 997
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E LG + + +TSV GH+
Sbjct: 39 KVLCVAEKNDAARGIADILSNSRMRRREGFSKFNKIYECQYHLLGQNVTVVMTSVSGHLL 98
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K + I R L +E + C LV+W DCDREGE
Sbjct: 99 AHDFKLPFRKWHSCNPLVLFDAEIEKFCPENYLDIKRTLEREVQQCQALVIWTDCDREGE 158
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI+ C + + +V RARFS +T + I A NL +P++N AVD RQE+D
Sbjct: 159 NIGFEVIDVCKAVKPS---LQVFRARFSEITPRAIKTACENLTQPDQNVNDAVDVRQELD 215
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 216 LRIGAAFTRFQTMRLQ 231
>gi|353233151|emb|CCD80506.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1058
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 116/193 (60%), Gaps = 7/193 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K+L VAEK A +I+ +LS G + R+ ++ ++EF G + + +TSV GH+
Sbjct: 26 MKILNVAEKNDAAKNISEILSRGGYHRREGISKFNKIYEFPMNLNGQNVMMVMTSVSGHL 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DF P Y+ W++ NP+ LF AP+ K I + L +E R C L++W DCDREG
Sbjct: 86 TNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPIKQTLQREVRSCQKLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI EVI+ C + N ++ RARFS +T + +A+ L P+ N + AVD RQE+
Sbjct: 146 ENIGVEVIDVCREIKPNI---EILRARFSEITPAAVHRAVDRLTIPDYNASTAVDVRQEL 202
Query: 180 DLKVGVAFTRFQT 192
DL++G AFTRFQT
Sbjct: 203 DLRIGAAFTRFQT 215
>gi|256052304|ref|XP_002569713.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1165
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 116/193 (60%), Gaps = 7/193 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K+L VAEK A +I+ +LS G + R+ ++ ++EF G + + +TSV GH+
Sbjct: 26 MKILNVAEKNDAAKNISEILSRGGYHRREGISKFNKIYEFPMNLNGQNVMMVMTSVSGHL 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DF P Y+ W++ NP+ LF AP+ K I + L +E R C L++W DCDREG
Sbjct: 86 TNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPIKQTLQREVRSCQKLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI EVI+ C + N ++ RARFS +T + +A+ L P+ N + AVD RQE+
Sbjct: 146 ENIGVEVIDVCREIKPN---IEILRARFSEITPAAVHRAVDRLTIPDYNASTAVDVRQEL 202
Query: 180 DLKVGVAFTRFQT 192
DL++G AFTRFQT
Sbjct: 203 DLRIGAAFTRFQT 215
>gi|296201147|ref|XP_002747908.1| PREDICTED: DNA topoisomerase 3-alpha [Callithrix jacchus]
Length = 931
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETHQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPS---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|383854782|ref|XP_003702899.1| PREDICTED: DNA topoisomerase 3-alpha-like [Megachile rotundata]
Length = 1018
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 8/198 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A +IA LS G R+ + +++EF + + +TSV GH+
Sbjct: 1 MKVLNVAEKNDAAKNIAGYLSRGTSKRREGLSPYNKIYEFKSQVWNQNCDMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHK-AESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
F AY+ W + +PL LF APV K + I L +E + C L++W DCDRE
Sbjct: 61 LDFQFVSAYRKWQSCHPLSLFDAPVTKQCIEQTSLKIKETLEREVKKCNALIIWTDCDRE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I+ C + N + V+RA+FS +T+ I +A+ NL EPN+ AVD R +
Sbjct: 121 GENIGFEIIQVCQAVKPNIS---VYRAKFSEITQASINRALQNLCEPNKAVNDAVDVRMQ 177
Query: 179 IDLKVGVAFTRFQTTYFQ 196
+DL++G AFTRFQT Q
Sbjct: 178 LDLRIGAAFTRFQTLRLQ 195
>gi|340376735|ref|XP_003386887.1| PREDICTED: DNA topoisomerase 3-alpha-like [Amphimedon
queenslandica]
Length = 981
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLGSHAYIKVTSVVGHV 60
K+L VAEK A +A V+SG + + R+ +++EF+ LG + +TSV GH+
Sbjct: 9 KILNVAEKNDAAKELAKVMSGRRGFQRREGFSKFNKIYEFNLHILGREHQMVMTSVSGHL 68
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+LDF Y++W P+ LF A V K+ + I R + +E RGC ++LW D DREG
Sbjct: 69 MQLDFIQIYRNWQNCAPIKLFDAQVEKSVQPDFIPIKRTIQREIRGCQDVILWTDGDREG 128
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E+I E+++ F+V R ++HRARFS +T + I +A NL ++ AV+ARQE+D
Sbjct: 129 EDIAQEIVDVC-FEVRQ-RLRIHRARFSEITPQSITRACTNLTVLDKRMVDAVEARQELD 186
Query: 181 LKVGVAFTRFQTTYFQGKYGNL 202
L++G AFTRFQT + + N+
Sbjct: 187 LRIGCAFTRFQTMRLRKVFPNI 208
>gi|123431134|ref|XP_001308043.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889702|gb|EAX95113.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 644
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 113/204 (55%), Gaps = 6/204 (2%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE---FDGMFLGSHAYIKVTSVVGH 59
P ++L VAEKPS+A A +LS G + T+K ++ + F F G A + TSV GH
Sbjct: 2 PKQILCVAEKPSVAREAANILSNGHMETKKGKSKYNNNFVFHRNFQGEDAKVIFTSVAGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
V DFPP Y++W LF + ++ + +L Q+AR + LWLD DRE
Sbjct: 62 VLNYDFPPEYKNWETFGNTKLFDCRIISGVTSNMQDVVDNLQQQARSVNLVFLWLDNDRE 121
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE I EV E QVN R RARFS ++ ++I+ A N NRN+A AV RQEI
Sbjct: 122 GEGISEEVEEICK-QVN-QRADFKRARFSGLSPREIIHAFNNPTPINRNDAAAVKLRQEI 179
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLD 203
DL++G AFTRFQ F+G + D
Sbjct: 180 DLRIGAAFTRFQKQ-FKGMLQDAD 202
>gi|449546712|gb|EMD37681.1| hypothetical protein CERSUDRAFT_50044 [Ceriporiopsis subvermispora
B]
Length = 1000
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 15/206 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI+ +LSGG+ TR+ + + + ++D + ++++ VTSV GH+F
Sbjct: 51 MRVLCVAEKPSIAKSISQILSGGQFTTRQTANKYIKDYDFNYPQTNSFFTVTSVSGHLFD 110
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF P + W + NP LF A + K+ ++L EA+ L++W DCDREGEN
Sbjct: 111 YDFEPQFSKWMSCNPFSLFDAQIVKSVKKDGKTTAQNLANEAKRAQKLMIWTDCDREGEN 170
Query: 123 ICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
I G +V D RK V RARFS++ + I A + VE + ++ AV AR
Sbjct: 171 I--------GAEVADVCRKANRNIIVQRARFSAIIAQQIHHAAQHPVELDMAQSNAVQAR 222
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNL 202
E+DL++G AFTR QT Q ++ L
Sbjct: 223 IELDLRIGAAFTRLQTLNLQERFDAL 248
>gi|357613303|gb|EHJ68426.1| prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 734
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 10/213 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA LS K R+ ++ ++EFD +G + + +TSV GH+
Sbjct: 1 MKYLNVAEKNDAAKNIAGFLSNFKHRRREGLSKFNKIYEFDAEVMGQRSKMVMTSVSGHL 60
Query: 61 FRLDF--PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+F + W+A +P LF PV K + +I L +E +GC L++W DCDR
Sbjct: 61 LNYEFVNKNESKKWDAYDPKKLFYEPVRKCCPDNYKNIKETLQREIKGCDGLIIWTDCDR 120
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FE+IE C Q N ++RA+FS +T + + +A+ NL P+ + + AVD RQ
Sbjct: 121 EGENIGFEIIEVCKNIQRNI---NIYRAKFSEITAQSVRRALSNLGVPDEHTSKAVDIRQ 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKY-GNLDSRFISL 209
E+DL++G FTRFQT Q + N+ ++ +S
Sbjct: 178 ELDLRIGAVFTRFQTVKIQSSFQNNVSNKIVSF 210
>gi|392593523|gb|EIW82848.1| prokaryotic type I DNA topoisomerase [Coniophora puteana RWD-64-598
SS2]
Length = 717
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA S+A +LSGG+ TR+ + + + + +++ VTSV GH+
Sbjct: 1 MEVLCVAEKPSIAKSVANILSGGRYQTRQTGEKYIRNYIFDYPQTNSQFTVTSVSGHIMG 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y+ W + +PL LF PV KV I +L Q AR L++W DCDREGEN
Sbjct: 61 HDFDEVYKSWRSVDPLQLFTLPVRCNVDKEKVKIKENLQQLARTANTLMIWTDCDREGEN 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I +E+++ C + N V+RARFS++ + I +A VE + +A AV+AR +DL
Sbjct: 121 IGYEIMQVCREVKANIT---VNRARFSAIIQNQIHRAAQRPVELDMAQAYAVEARSILDL 177
Query: 182 KVGVAFTRFQTTYFQ 196
++G AFTR Q+ Q
Sbjct: 178 RIGAAFTRMQSLTLQ 192
>gi|392351278|ref|XP_002742497.2| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 977
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A +L EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|410902017|ref|XP_003964491.1| PREDICTED: DNA topoisomerase 3-alpha-like [Takifugu rubripes]
Length = 967
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK A I+ ++S G+ R+ ++ ++E++ G + + +TSV GH+
Sbjct: 10 RVLCVAEKNDAAKGISDIMSNGRFRRREGMSKFNKIYEYEYHLFGQNVTVLMTSVSGHLL 69
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F +Q W++ +P+ LF A V K V I R L +E + C L++W DCDREGE
Sbjct: 70 GLEFKTPFQKWHSCSPVLLFDAEVEKYCPENMVQIKRTLEKEVKQCQLLIIWTDCDREGE 129
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I+ C + N +V RA+FS +T I +A L EP+ + AVD RQE+D
Sbjct: 130 NIGFEIIDVCKAVKPNI---QVLRAKFSEITPNSIRRACDTLSEPDSKVSDAVDVRQELD 186
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G +FTRFQT Q
Sbjct: 187 LRIGASFTRFQTLRLQ 202
>gi|449281375|gb|EMC88455.1| DNA topoisomerase 3-alpha [Columba livia]
Length = 1016
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 7/192 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E+D G + +TSV GH+
Sbjct: 35 KVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQSVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K + I R L +E + C LV+W DCDREGE
Sbjct: 95 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREVQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL +P++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVFRARFSEITLHAVRTACENLTQPDQKTSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQT 192
L++G AFTRFQT
Sbjct: 212 LRIGAAFTRFQT 223
>gi|291224920|ref|XP_002732450.1| PREDICTED: MGC80537 protein-like [Saccoglossus kowalevskii]
Length = 916
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 117/192 (60%), Gaps = 8/192 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK A S+A V+S G R+ + +++E+D L + + +TSV GH+
Sbjct: 7 RVLNVAEKNDAAKSLADVMSRGHYNRREGFSVYNKIYEWDFNILNRNCKMTMTSVSGHLS 66
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+F YQ W +P LF APV K + + I R L +EAR C L++W D DREGE
Sbjct: 67 NYEFIGVYQKWLGCDPAMLFDAPVEKLCKDFQ-DIKRTLEREARQCKILIIWTDGDREGE 125
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI +E+I+ CT +AR V+RARFS +T + I + NL+ P++ + AVD RQE+D
Sbjct: 126 NIGYEIIDICTNV---NARLDVYRARFSEITPRSITRTCDNLIRPDKRTSDAVDVRQELD 182
Query: 181 LKVGVAFTRFQT 192
L++G AFTRFQT
Sbjct: 183 LRIGAAFTRFQT 194
>gi|380021980|ref|XP_003694833.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Apis florea]
Length = 1011
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 8/194 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEK A +IA LS G R+ ++ EF+ + ++ +TSV GH+
Sbjct: 1 MNVLNVAEKNDAAKNIAAYLSRGAYKRREGLWLYNKIFEFNSYLWNKNCHMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESN-PKVHICRHLNQEARGCGHLVLWLDCDRE 119
+F Y+ W + +PL LF APV K S + I + L +E + C L++W DCDRE
Sbjct: 61 LNCEFVGIYRKWQSCHPLSLFDAPVIKQCSQESSIKIKKTLEKEVQKCNALIIWTDCDRE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I+ C + N +++RA+FS +T+ I +++ NL EP++ + AVD R E
Sbjct: 121 GENIGFEIIQVCRAIKPN---IRIYRAKFSEITQTSINRSLQNLCEPDKAVSDAVDVRSE 177
Query: 179 IDLKVGVAFTRFQT 192
+DL++G AFTRFQT
Sbjct: 178 LDLRIGAAFTRFQT 191
>gi|345487699|ref|XP_001605592.2| PREDICTED: DNA topoisomerase 3-alpha-like [Nasonia vitripennis]
Length = 1138
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 122/211 (57%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+KVL VAEK A +IA LS G ++ + +++EF + +TSV GH+
Sbjct: 45 MKVLNVAEKNDAAKNIAGYLSRGTSRRKEGLSPYNKIYEFQSRLWNKDCQMIMTSVSGHL 104
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHK-AESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+F AY+ W PL LF+APV K + + I + + +E R C L++W DCDRE
Sbjct: 105 LNYEFTGAYRKWYGCPPLSLFEAPVVKQCQQDNYEKIKKTIEREVRSCSALIIWTDCDRE 164
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I+ C + N +V+RA+FS +T+ I +A+ +L EPN+ + AVD R E
Sbjct: 165 GENIGFEIIQVCQAVKPNI---RVYRAKFSEITQISIDRALQSLEEPNKAISDAVDVRSE 221
Query: 179 IDLKVGVAFTRFQTTYFQGKYG-NLDSRFIS 208
+DL++G AFTRFQT Q + NL IS
Sbjct: 222 LDLRIGAAFTRFQTMRLQKAFPRNLADMLIS 252
>gi|389741773|gb|EIM82961.1| prokaryotic type I DNA topoisomerase [Stereum hirsutum FP-91666
SS1]
Length = 637
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSI+ SI +LSGG+ TR +T V +D + +H+ VT V GH+
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQFTTRNTATNYVKNYDFTYNYTHSTFTVTCVAGHLME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF ++ W + +P+ LF AP+ + K I ++++ EAR L++W DCDREGEN
Sbjct: 61 YDFHDTHRKWQSCDPIALFDAPIESKTAKDKTAIAQNISNEARRADQLMIWTDCDREGEN 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +E++ Q + V RARFS++ + I A + +E + +A AV AR +DL+
Sbjct: 121 IGWEIMVTA--QKTNRNIIVKRARFSAIIAQQIHNAAQHPIELDLLQAQAVTARINLDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNL 202
+G AFTR QT + + L
Sbjct: 179 IGAAFTRMQTMALRDRLEKL 198
>gi|109490882|ref|XP_001077625.1| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 735
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A +L EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|414886209|tpg|DAA62223.1| TPA: hypothetical protein ZEAMMB73_319569 [Zea mays]
Length = 110
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 80/94 (85%), Gaps = 1/94 (1%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
MAP KVLMVAEKPSIALSIA+ LSGG++ TRK ST+VHEFDG F GS+A KVTSV+GHV
Sbjct: 1 MAP-KVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGTFQGSYANFKVTSVIGHV 59
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKV 94
+DFPPAYQ+W ++P+DLF+APV ++E NPKV
Sbjct: 60 LSVDFPPAYQNWEGTDPMDLFEAPVLRSECNPKV 93
>gi|328786138|ref|XP_394050.4| PREDICTED: DNA topoisomerase 3-alpha-like [Apis mellifera]
Length = 1012
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 8/194 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEK A +IA LS G R+ ++ EF+ + ++ +TSV GH+
Sbjct: 1 MNVLNVAEKNDAAKNIAAYLSRGTYKRREGLWLYNKIFEFNSYLWNKNCHMIMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESN-PKVHICRHLNQEARGCGHLVLWLDCDRE 119
+F Y+ W + +PL LF APV K S + I + L +E + C L++W DCDRE
Sbjct: 61 LNCEFVGIYRKWQSCHPLSLFDAPVVKQCSQESSIKIKKTLEKEVQKCNALIIWTDCDRE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I+ C + N +++RA+FS +T+ + +++ NL EP++ + AVD R E
Sbjct: 121 GENIGFEIIQVCRAIKPN---IRIYRAKFSEITQTSVNRSLQNLCEPDKAISDAVDVRSE 177
Query: 179 IDLKVGVAFTRFQT 192
+DL++G AFTRFQT
Sbjct: 178 LDLRIGAAFTRFQT 191
>gi|313245530|emb|CBY40233.1| unnamed protein product [Oikopleura dioica]
Length = 914
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K+L VAEK A +IA LS G ++ +++F MF G A +TSV GH+
Sbjct: 1 MKILCVAEKNDAAKNIAHQLSNGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+FP + +W++ NP LF AP+ K + + ++L Q++R L++W DCDREG
Sbjct: 61 QNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI EV+ + R V RARFS +T+ + +A+ NL N A AVDARQE+D
Sbjct: 121 ENIGAEVVNVCKRANRNLR--VLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELD 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L++G +FTR Q+ + Q ++ L SR +S
Sbjct: 179 LRIGASFTRLQSLFLQRRFPALASRLVSF 207
>gi|313216789|emb|CBY38031.1| unnamed protein product [Oikopleura dioica]
gi|313233526|emb|CBY09698.1| unnamed protein product [Oikopleura dioica]
Length = 933
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K+L VAEK A +IA LS G ++ +++F MF G A +TSV GH+
Sbjct: 1 MKILCVAEKNDAAKNIAHQLSNGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+FP + +W++ NP LF AP+ K + + ++L Q++R L++W DCDREG
Sbjct: 61 QNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI EV+ + R V RARFS +T+ + +A+ NL N A AVDARQE+D
Sbjct: 121 ENIGAEVVNVCKRANRNLR--VLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELD 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L++G +FTR Q+ + Q ++ L SR +S
Sbjct: 179 LRIGASFTRLQSLFLQRRFPALASRLVSF 207
>gi|344298058|ref|XP_003420711.1| PREDICTED: DNA topoisomerase 3-alpha [Loxodonta africana]
Length = 1006
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++EFD G + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNSRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E + C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFLDIKKTLERETQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + V RARFS +T + I A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPS---LPVLRARFSEITPRAIRLACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|313212908|emb|CBY36814.1| unnamed protein product [Oikopleura dioica]
Length = 929
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+K+L VAEK A +IA LS G ++ +++F MF G A +TSV GH+
Sbjct: 1 MKILCVAEKNDAAKNIAHQLSNGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+FP + +W++ NP LF AP+ K + + ++L Q++R L++W DCDREG
Sbjct: 61 QNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI EV+ + R V RARFS +T+ + +A+ NL N A AVDARQE+D
Sbjct: 121 ENIGAEVVNVCKRANRNLR--VLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELD 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L++G +FTR Q+ + Q ++ L SR +S
Sbjct: 179 LRIGASFTRLQSLFLQRRFPALASRLVSF 207
>gi|397627399|gb|EJK68461.1| hypothetical protein THAOC_10357, partial [Thalassiosira oceanica]
Length = 1051
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 122/211 (57%), Gaps = 23/211 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE----VHEFDG-MFLGSH--------AY 50
++VLMVAEKPSIA SIA LSG + ++ V+EF+ FL ++
Sbjct: 291 VRVLMVAEKPSIAKSIADALSGNRGPRQRKGISRALPVYEFNTHNFLPANNVTGEKTPCL 350
Query: 51 IKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAE--SNPKVHICRHLNQEARGCG 108
++VTSVVGH++ L F QD S+P + F PV K E ++ K+ + HL A
Sbjct: 351 VRVTSVVGHIYSLGFDQQGQD-KKSDPREYFTMPVTKQEEGTSSKLRVVDHLKALAGDSN 409
Query: 109 HLVLWLDCDREGENICFEVIECTGFQV-------NDARRKVHRARFSSVTEKDILKAMGN 161
HL LWLDCD EGENI FEV+ T + +D R++HRA+FS++T K I A
Sbjct: 410 HLCLWLDCDAEGENIAFEVLAVTRRAILTNNPSSDDGVRRIHRAKFSAITPKAIQDAFVT 469
Query: 162 LVEPNRNEALAVDARQEIDLKVGVAFTRFQT 192
+ EP+ + +VDARQE+DL++GVA TR T
Sbjct: 470 MEEPDAALSRSVDARQELDLRIGVAMTRLLT 500
>gi|427782477|gb|JAA56690.1| Putative dna topoisomerase iii beta [Rhipicephalus pulchellus]
Length = 669
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 124/211 (58%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEK A +IA +LS G+ R+ ++ ++EFD + + +TSV GH+
Sbjct: 1 MRVLNVAEKNDAAKNIAELLSQGRFQRREGLSKYNKIYEFDYRIFNNMCKMVMTSVSGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH-LNQEARGCGHLVLWLDCDRE 119
LDF Y+ W++ P +LF APV + ++ K + + L +E R C L++W DCDRE
Sbjct: 61 LNLDFVSGYRKWHSCAPSELFDAPVAEICTDQKYELIKQTLEREVRYCDTLIIWTDCDRE 120
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI FE+I C + N +V+RARFS +T + +A+ NL +P+ AV R+E
Sbjct: 121 GENIGFEIIGVCRKVKPN---LRVYRARFSEITPAAVTRAVANLTDPDPRLNAAVYVRRE 177
Query: 179 IDLKVGVAFTRFQTTYFQGKYGN-LDSRFIS 208
+DL++G AFTR QT + ++ L R +S
Sbjct: 178 LDLRIGAAFTRLQTLRLKREFPQELGDRLVS 208
>gi|424513003|emb|CCO66587.1| predicted protein [Bathycoccus prasinos]
Length = 751
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 13/199 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGK-LYTRKASTE---VHEFDGMFL---GSHAYIKVTSV 56
+K+L VAEKPS+A ++ VL GG+ +R+ +++ + EF F +A +K TSV
Sbjct: 39 VKILNVAEKPSVAKEVSRVLCGGRGCQSRQGASKFNRIFEFINPFPINNARNAQMKFTSV 98
Query: 57 VGHVFRLDFPP-AYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
GH+ DF Y+ W S+ DLF +A + K + K + +L +EAR L+LWL
Sbjct: 99 TGHLMNYDFTEHEYKSWEHSDARDLFGRARIAKLVPDDKKEVKVNLEREARTSEWLILWL 158
Query: 115 DCDREGENICFEVIECTGFQVNDARR-KVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
DCDREGENI EV++ +N RR KV RARFS+++ +D+ +A+ NL P+ ++AV
Sbjct: 159 DCDREGENIAMEVVDVC---LNANRRLKVFRARFSALSYQDVSRALMNLQRPDEAASIAV 215
Query: 174 DARQEIDLKVGVAFTRFQT 192
DARQE+DL++G AFTRF T
Sbjct: 216 DARQELDLRLGAAFTRFNT 234
>gi|342186042|emb|CCC95527.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 913
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 115/199 (57%), Gaps = 9/199 (4%)
Query: 7 LMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A I+ +LS G T V EFD G H + TSV GH+
Sbjct: 5 LNVAEKPSVAKEISFILSNGTYRSTATHSRYNPVFEFD--MNGKH--MLCTSVKGHLMTD 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+FPP ++W +LF A + + + R+L R L LW+DCD EGENI
Sbjct: 61 EFPPQAKNWTNYPIQELFTATLTRHVKPEMSAVKRNLETLGRRATTLGLWMDCDSEGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEVI +VN +R K+ RA FS++T++DI +AM NL +PNR A AVDARQEIDL+V
Sbjct: 121 CFEVINVVS-RVN-SRIKICRAVFSALTKRDIFRAMENLRQPNRAVADAVDARQEIDLRV 178
Query: 184 GVAFTRFQTTYFQGKYGNL 202
G F+RFQT F+ + +
Sbjct: 179 GAVFSRFQTLRFRDMFSGM 197
>gi|224070273|ref|XP_002189800.1| PREDICTED: DNA topoisomerase 3-alpha [Taeniopygia guttata]
Length = 1009
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 7/192 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS ++ R+ ++ ++E+D G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAARGIAELLSNSRMRRREGFSKFNKIYEYDYHMFGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W++ NPL LF A + K + I R L +E + C LV+W DCDREGE
Sbjct: 95 AHDFVMPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREIQQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A +L +P++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCRAVKPN---LQVFRARFSEITPHAVRAACEHLTQPDQKTSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQT 192
L++G AFTRFQT
Sbjct: 212 LRIGAAFTRFQT 223
>gi|449664549|ref|XP_004205945.1| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 277
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+ VL VAEK A ++ ++S G+ R+ ++ ++EF+ + + +TSV GH+
Sbjct: 9 MHVLNVAEKNDAAKCLSQIMSNGRSNRREGFSKFNKIYEFEYKIFNCNCNMIMTSVSGHL 68
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF Y WN P+ LF+AP+ + + I + L +E R C L++W D DREG
Sbjct: 69 IDLDFGGGYNKWNQCAPVALFEAPICRFVPDNFKDIQKTLEREVRKCQALIIWTDGDREG 128
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FE+IE Q + V+RA+FS +T + + +A NLV P++N + AV+ R+E+D
Sbjct: 129 ENIGFEIIEVC--QKAKSNIDVYRAKFSEITSRAVHQACRNLVAPDKNVSNAVEVRRELD 186
Query: 181 LKVGVAFTRFQTTYFQGKY 199
L++G +FTRFQT Q ++
Sbjct: 187 LRIGASFTRFQTMRLQKRF 205
>gi|403275443|ref|XP_003929454.1| PREDICTED: DNA topoisomerase 3-alpha [Saimiri boliviensis
boliviensis]
Length = 923
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R T+ + D G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRRDHLTKWDRIEPADYYVYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + + +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPS---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>gi|145526124|ref|XP_001448873.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416439|emb|CAK81476.1| unnamed protein product [Paramecium tetraurelia]
Length = 859
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 6/204 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+KVL VAEKPS+A SIA VLS T+ ++ + D + +TSV GH+
Sbjct: 13 IKVLNVAEKPSVARSIANVLSKDHRIEETKSPFNKLFKLDYRLKDVEVEMWITSVTGHLK 72
Query: 62 RLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L +P YQ W +P+ + +A + S K ++ +L A C L+LWLDCDREG
Sbjct: 73 SLKYPQKYQSWEKWDPIIILKEAEIENNISTDKQNLELNLKNFASICNRLILWLDCDREG 132
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FEV+E + + +V+RA FS+VT D+ +A+ L P++N + +V ARQEID
Sbjct: 133 ENIAFEVMEVC--REANPNIQVNRAHFSAVTYVDVRRALDTLKYPDQNLSNSVIARQEID 190
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDS 204
L++G +FTRFQT Q ++ NL S
Sbjct: 191 LRIGASFTRFQTLLLQKQF-NLSS 213
>gi|156087759|ref|XP_001611286.1| DNA topoisomerase family protein [Babesia bovis]
gi|154798540|gb|EDO07718.1| DNA topoisomerase family protein [Babesia bovis]
Length = 633
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 16/207 (7%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A SI+ +LSGG++ + + + V+ F G H + TSV GH+
Sbjct: 4 VLNVAEKPSVARSISDILSGGRMRSEMSNARTNPVYSFTAPLEGRHCKMYFTSVRGHLME 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
+DF Y++W + LF AP+ A S+ I ++L AR C LVLWLDCDREGE
Sbjct: 64 IDFDARYRNWQRTPIESLFCAPIQAAVSSNCKDIEKNLLHYARMCSKLVLWLDCDREGEA 123
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTE-----------KDILKAMGNLVEPNRNEAL 171
I +EV+ +VN A + RA FS+VT +I A L EPN N A
Sbjct: 124 IAYEVMAVCQ-RVNSA-IAIRRAIFSAVTRWSFICDLDVVGHEIETACATLREPNPNLAQ 181
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
AV+ARQEIDL++G + TRF TT ++ +
Sbjct: 182 AVEARQEIDLRIGSSMTRFMTTRYRER 208
>gi|428672326|gb|EKX73240.1| DNA topoisomerase III, putative [Babesia equi]
Length = 622
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 5/195 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKL---YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
++ VAEKPS+A +I +LS GK +T V F G + + TSV GH+
Sbjct: 3 RIFNVAEKPSVARNITEILSNGKSTKEFTNSRMNPVFSFTYHIDGEVSKMYFTSVKGHLS 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F P+Y +WN + +LF AP ++ I +++ A+ C ++LWLDCDREGE
Sbjct: 63 SLEFDPSYSNWNRTPIHELFTAPTYQIIIKDCKDIEKNIQYYAKLCDKMILWLDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I FEVIE F+ + RA FS+VT DI +A NL EP+ N A AV+ RQEIDL
Sbjct: 123 AIAFEVIEV--FRGVQKSSNIKRAVFSAVTRSDIEQACCNLREPDINLAKAVETRQEIDL 180
Query: 182 KVGVAFTRFQTTYFQ 196
++G A TRF T ++
Sbjct: 181 RIGSAMTRFMTLKYK 195
>gi|47211975|emb|CAF95297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 984
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 10/220 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK A I+ ++S G+ R+ ++ ++EF+ LG + + +TSV GH+
Sbjct: 10 RVLCVAEKNDAAKGISEIMSNGRFRRREGMSKFNKIYEFEYHLLGQNVTVAMTSVSGHLL 69
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F +Q W++ NP+ LF A V K + V I R L +E + C LV+W DCDREGE
Sbjct: 70 ALEFKAPFQKWHSCNPVILFDAEVEKYCPDNMVQIKRTLEKEVKQCQLLVIWTDCDREGE 129
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I+ C + N +V RA+FS +T I +A L EP+ N + AVD RQE+D
Sbjct: 130 NIGFEIIDVCKAVKSNI---QVLRAKFSEITPNSIRRACSTLTEPDSNVSDAVDVRQELD 186
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICFH 220
L++ + T F K L + LV L+ IC
Sbjct: 187 LRIVLHEVEEDTVEFSWKRNRLFNHTACLV---LYQICME 223
>gi|401420366|ref|XP_003874672.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490908|emb|CBZ26172.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 948
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 9/193 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A +A LSGG T ++ + V+EF F G + VTSV GH+
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGNCRTAQSQSRFNPVYEFK--FEGK--TMLVTSVAGHLMED 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
FPP ++W+ LF AP+ K + ++L A LVLWLDCDREGENI
Sbjct: 61 QFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALASRAETLVLWLDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++
Sbjct: 121 CFEVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRI 178
Query: 184 GVAFTRFQTTYFQ 196
G AFTR+QT F+
Sbjct: 179 GAAFTRYQTVKFR 191
>gi|169806308|ref|XP_001827899.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
gi|161779347|gb|EDQ31370.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
Length = 722
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 24/199 (12%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYI------KVTSVVGH 59
++ VAEKPS+A SIA + S S EV++ + +H +I TSV+GH
Sbjct: 3 IVNVAEKPSVAKSIANIFSN--------SVEVYKGQNKYCLNHKFIFKNNNMIFTSVLGH 54
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
++ +FP Y++WN NP +LF A ++K ++I +++ + +V+W DCDRE
Sbjct: 55 MYEFEFPSEYKNWNTINPKNLFTAKIYKKLKTESIYIKKNIEDLSINADLVVIWTDCDRE 114
Query: 120 GENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GENI G Q+ +KV RARFS++++ +ILKA NL + N+ E+ AV+ARQ
Sbjct: 115 GENI--------GKQIQSLVYNKKVKRARFSAISKHEILKAFDNLCDINQYESDAVEARQ 166
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL++G AFT QT Q
Sbjct: 167 EIDLRIGCAFTVLQTLALQ 185
>gi|392570043|gb|EIW63216.1| prokaryotic type I DNA topoisomerase [Trametes versicolor FP-101664
SS1]
Length = 961
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSI+ SI +LSGG+ TR + + + +D + ++++ VTSV GHV
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQFTTRNSRNKYIKNYDFNYPQTNSFYTVTSVTGHVME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y W + +P LF+APV I +L EAR L++W DCDREGEN
Sbjct: 61 HDFNIMYSKWTSCDPFALFEAPVECRVKKDADTIAENLKTEARRAQLLMIWTDCDREGEN 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E+++ + +A V RARFS++ + I A N V+ + +A AV+ R +DL+
Sbjct: 121 IGAEIMKIC--RKANANITVRRARFSAIIAQQIHHAAQNPVQLDMAQANAVETRILLDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
+G AFTR QT Q ++ L IS
Sbjct: 179 IGSAFTRLQTLNLQNRHEALKRELIS 204
>gi|389603297|ref|XP_001568961.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505799|emb|CAM44094.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 951
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 5/191 (2%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHE-FDGMFLGSHAYIKVTSVVGHVFRLDF 65
L VAEKPS+A +A LSGG T ++ + + F+ F G + VTSVVGH+ F
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGHCRTVQSQSRFNPVFEFNFEGK--TMLVTSVVGHLMEDQF 62
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP ++W+ LF AP+ K + ++L A L+LWLDCDREGENICF
Sbjct: 63 PPNTKNWSTYPFQGLFSAPISKYVRTDLEPVKKNLEALATRADALILWLDCDREGENICF 122
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++G
Sbjct: 123 EVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIGA 180
Query: 186 AFTRFQTTYFQ 196
FTR+QT F+
Sbjct: 181 TFTRYQTVKFR 191
>gi|403364238|gb|EJY81876.1| DNA topoisomerase [Oxytricha trifallax]
Length = 955
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 7/195 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYI-KVTSVVGHVF 61
L VAEKP++A S++ LS + + ++ V EFD M +G+ Y+ +VTSV+GHV
Sbjct: 6 ALCVAEKPTVAKSVSEFLSRNRFQKFNSLSKFNPVFEFDYM-IGNQPYLLRVTSVLGHVM 64
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
FP + ++W +N L++ + K V + +++ R L+LWLDCDREGE
Sbjct: 65 SYKFPDSCKNWQNTNYDQLYEIDLEKYVIENNVQVVKNVQAACRDVDELILWLDCDREGE 124
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I F+VI+ +VN R KV RA FS++T +DI +A+ NLV PN+N + AV RQEIDL
Sbjct: 125 AIAFDVIDIC-VKVN-RRLKVLRAHFSALTREDIERAVQNLVPPNQNLSDAVRVRQEIDL 182
Query: 182 KVGVAFTRFQTTYFQ 196
++G +FTR QT F+
Sbjct: 183 RIGASFTRLQTLNFR 197
>gi|239608834|gb|EEQ85821.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 632
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 119/217 (54%), Gaps = 12/217 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH----EFDGMFLG--SHAYIKVTSVVG 58
KVL VAEKP+IA ++A LSGG V+ EFD F + +TSV+G
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGSSRAVSIRGNVYVKNYEFDFTFAPPWGQCSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV + + K+ I ++ AR L +W DCDR
Sbjct: 64 HLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q A R +V RARFS+ IL+A N +E + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSS 213
E+DL++G AFTR QT + G L+ R IS V S
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGALEDRVISYVSGS 216
>gi|323456520|gb|EGB12387.1| hypothetical protein AURANDRAFT_20044, partial [Aureococcus
anophagefferens]
Length = 627
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 117/211 (55%), Gaps = 15/211 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH----EFDGMFLGSHAYIKV----TS 55
++ L VAEKPS+A +A LS G + V+ +F+ SH +V TS
Sbjct: 5 IRALHVAEKPSVAKKVAEHLSKGVACNNRQGPSVYNRLFDFETGGPPSHGACRVRHVVTS 64
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVL 112
V GH+ +F + W+A P DL + + E + K + R L EAR LVL
Sbjct: 65 VTGHLMSTEFEEPHNKWHACAPRDLLCEDLSRVEWTVAEEKAPLKRQLEDEARAADWLVL 124
Query: 113 WLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
WLDCDREGE I FEV++ C + N + RA+FSSV EK+ILKA +L P++ +A
Sbjct: 125 WLDCDREGEAIAFEVVDVCRRIKPN---VDLWRAKFSSVDEKEILKAWRSLGRPDKRKAD 181
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
AV AR E+DL+ G AFTRFQT QGKY +
Sbjct: 182 AVAARCELDLRSGAAFTRFQTFRVQGKYAGV 212
>gi|261203873|ref|XP_002629150.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239586935|gb|EEQ69578.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 632
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 16/219 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAS------TEVHEFDGMFLG--SHAYIKVTSV 56
KVL VAEKP+IA ++A LSGG +R S + +EFD F + +TSV
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGS--SRAVSIRGNVYVKNYEFDFTFAPPWGQCSVTMTSV 61
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+GH+ LDF Y+ WN+ P LF APV + + K+ I ++ AR L +W DC
Sbjct: 62 IGHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDC 121
Query: 117 DREGENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DREGE+I EV +Q A R +V RARFS+ IL+A N +E + ++A AV
Sbjct: 122 DREGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSS 213
AR E+DL++G AFTR QT + G L+ R IS V S
Sbjct: 178 ARIELDLRIGAAFTRLQTLQLKSLGGALEDRVISYVSGS 216
>gi|308801985|ref|XP_003078306.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
gi|116056757|emb|CAL53046.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
Length = 842
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 116/199 (58%), Gaps = 11/199 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEKPS+A I+ VLS G R+ +T +V EF+ + G + TSV GH+
Sbjct: 6 RVLNVAEKPSVAKEISRVLSNGTARVREGATAWNKVWEFEHVVRGRPVTMVFTSVTGHLS 65
Query: 62 RLDFPPA-YQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+F ++ W + +P +L A V K K ++ +EARGC ++LWLDCDRE
Sbjct: 66 NFEFAEERHRRWASVDPRELLVDARVVKRVPEDKRKTAENVKREARGCDTVILWLDCDRE 125
Query: 120 GENICFEVIECTGFQVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GENI FEV+E A+ + RARFS++ D +A+ NLV+PN EA AVD R
Sbjct: 126 GENIAFEVLEA----CRQAKPGITALRARFSALGRGDADRALANLVQPNEYEAKAVDMRM 181
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
E+DL++G AFTRF T Q
Sbjct: 182 ELDLRLGAAFTRFNTLALQ 200
>gi|157877136|ref|XP_001686899.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68129974|emb|CAJ09282.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 947
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A +A LSGG T + + V+EF F G + VTSV GH+
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGNCRTVPSQSRFNPVYEFK--FEGK--TMLVTSVAGHLMED 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
FPP ++W+ LF AP+ K + ++L A LVLWLDCDREGENI
Sbjct: 61 QFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++
Sbjct: 121 CFEVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRI 178
Query: 184 GVAFTRFQTTYFQ 196
G AFTR+QT F+
Sbjct: 179 GAAFTRYQTVKFR 191
>gi|146104103|ref|XP_001469727.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134074097|emb|CAM72839.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 947
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A +A LSGG T + + V+EF F G + VTSV GH+
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGNCRTVPSQSRFNPVYEFK--FEGK--TMLVTSVAGHLMED 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
FPP ++W+ LF AP+ K + ++L A LVLWLDCDREGENI
Sbjct: 61 QFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++
Sbjct: 121 CFEVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRI 178
Query: 184 GVAFTRFQTTYFQ 196
G AFTR+QT F+
Sbjct: 179 GAAFTRYQTVKFR 191
>gi|350635779|gb|EHA24140.1| hypothetical protein ASPNIDRAFT_48367 [Aspergillus niger ATCC 1015]
Length = 629
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMFLGSHAY--IKVT 54
M +VL VAEKP+IA ++A LSGG T + + FD F GS + +T
Sbjct: 1 MTAQRVLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGSWGTCSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ LDF Y+ W + P LF+APVH++ ++ KV I +++ ++AR C L +W
Sbjct: 61 SVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I E+ + + ++R V RARFS+ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEIRKQA--KEGNSRIVVKRARFSNTEKAHVLHAARSLIELDDLQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR QT + L IS
Sbjct: 179 ARIELDLRIGAAFTRLQTLQLKPLSAALQDTIIS 212
>gi|145238250|ref|XP_001391772.1| DNA topoisomerase 3 [Aspergillus niger CBS 513.88]
gi|134076254|emb|CAK39540.1| unnamed protein product [Aspergillus niger]
Length = 629
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMFLGSHAY--IKVT 54
M +VL VAEKP+IA ++A LSGG T + + FD F GS + +T
Sbjct: 1 MTAQRVLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGSWGTCSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ LDF Y+ W + P LF+APVH++ ++ KV I +++ ++AR C L +W
Sbjct: 61 SVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I E+ + + ++R V RARFS+ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEIRKQA--KEGNSRIVVKRARFSNTEKAHVLHAARSLIELDDLQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR QT + L IS
Sbjct: 179 ARIELDLRIGAAFTRLQTLQLKPLSAALQDTIIS 212
>gi|395333070|gb|EJF65448.1| prokaryotic type I DNA topoisomerase, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 1032
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR + + + +D + ++A+ VTSV GHV
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGRFNTRNSRNKYIKNYDFDYPQTNAHFTVTSVTGHVMD 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y W + +P LF AP+ + I +L EA L++W DCDREGEN
Sbjct: 61 YDFNVMYSKWTSCDPFALFDAPIECKVKDDAKTIADNLKTEAARAQMLMIWTDCDREGEN 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E+ Q ++ V RARFS++ + I A + V + +A AV+AR +DL+
Sbjct: 121 IGAEIARIC--QRSNRNLTVRRARFSAIIAQQIHNAAQHPVNLDMAQASAVEARILLDLR 178
Query: 183 VGVAFTRFQTTYFQGKYGNLDSRFIS 208
+G AFTR QT Q +Y L IS
Sbjct: 179 IGSAFTRLQTLNLQRRYEALKKELIS 204
>gi|209875815|ref|XP_002139350.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209554956|gb|EEA05001.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 843
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 114/199 (57%), Gaps = 11/199 (5%)
Query: 6 VLMVAEKPSIALSIATVL-----SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
VL +AEK S+A IA L + L ++ + V F F GS + VTSV GH+
Sbjct: 55 VLCIAEKHSVAKEIAWCLCPQNQNPNYLNSKSKTNPVLSFPYYFEGSKCNMIVTSVRGHI 114
Query: 61 FRLDFPPAYQDWNASNPLDLFQ--APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+L F P + W +P+ L P+ K S I ++L ++ L+LWLDCDR
Sbjct: 115 KQLKFDPRFSSWETVDPIVLLNLSTPLIKVVSEDCNDIAQNLKHYSKLASTLILWLDCDR 174
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FEVI C + + K+ RARFS++T+ DI AM NLV PNR + AV+ARQ
Sbjct: 175 EGENIAFEVISVCLD---ANPKLKILRARFSALTKSDIEGAMNNLVAPNRAMSDAVEARQ 231
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL++G +FTRF T +Q
Sbjct: 232 EIDLRIGSSFTRFLTLRYQ 250
>gi|398024578|ref|XP_003865450.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322503687|emb|CBZ38773.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 947
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A +A LSGG T + + V+EF F G + VTSV GH+
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGNCRTVPSQSRFNPVYEFK--FEGK--TMLVTSVAGHLMED 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
FPP ++W+ LF AP+ K + ++L A LVLWLDCDREGENI
Sbjct: 61 QFPPNTKNWSTYPFQGLFLAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++
Sbjct: 121 CFEVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRI 178
Query: 184 GVAFTRFQTTYFQ 196
G AFTR+QT F+
Sbjct: 179 GAAFTRYQTVKFR 191
>gi|358368744|dbj|GAA85360.1| DNA topoisomerase III [Aspergillus kawachii IFO 4308]
Length = 629
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 123/214 (57%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMFLGSHAY--IKVT 54
M +VL VAEKP+IA ++A LSGG T + + FD F G + +T
Sbjct: 1 MTTQRVLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGPWGTCSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ LDF Y+ W + P LF+APVH++ ++ KV I +++ ++AR C L +W
Sbjct: 61 SVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I E+ + + +AR + RARFS+ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEIRKQA--KEGNARIVIKRARFSNTEKAHVLHAARSLIELDDLQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR QT + L IS
Sbjct: 179 ARIELDLRIGAAFTRLQTLQLKPLSAALQDTIIS 212
>gi|68010938|ref|XP_670942.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486663|emb|CAI03408.1| hypothetical protein PB301170.00.0 [Plasmodium berghei]
Length = 242
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 6/195 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVV 57
M +KVL VAEKPS+A +I ++ S G+ +K+ ++ V FD + VTSV
Sbjct: 1 MGRIKVLNVAEKPSVASAIVSIFSKGESNKKKSYSKYNPVFTFDYKMENETWSMFVTSVT 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ F Y++WN ++P +LF A + K I +L + ++ C L+LWLDCD
Sbjct: 61 GHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+ICFEVI V + + K+HRA+FS+VTEKDI A+ NL N+ A VD R+
Sbjct: 121 REGEHICFEVINACS--VTNKKLKIHRAQFSAVTEKDIKYAINNLKSQNKILAQRVDVRR 178
Query: 178 EIDLKVGVAFTRFQT 192
+ L +G F R T
Sbjct: 179 -LYLTMGSIFNRIMT 192
>gi|327356144|gb|EGE85001.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 630
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 117/212 (55%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH----EFDGMFLG--SHAYIKVTSVVG 58
KVL VAEKP+IA ++A LSGG V+ EFD F + +TSV+G
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGSSRAVSIRGNVYVKNYEFDFTFAPPWGQCSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV + + K+ I ++ AR L +W DCDR
Sbjct: 64 HLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q A R +V RARFS+ IL+A N +E + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGALEDRVIS 211
>gi|345568376|gb|EGX51270.1| hypothetical protein AOL_s00054g340 [Arthrobotrys oligospora ATCC
24927]
Length = 652
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 6/209 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMF-LGSHAYIKVTSVVGH 59
+KVL VAEK S+A ++A LSGG+ TR+ + ++FD F H + +T+V GH
Sbjct: 2 VKVLCVAEKSSVAKAVAGHLSGGRFQTRQTGNKYIRNYDFDYKFNQWDHCEVTMTAVQGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+DF ++ W+ +P++LF AP+ K K I ++ +EAR L +W DCDRE
Sbjct: 62 TEEIDFVDRFRKWSDCDPVELFDAPITKNIEKDKRSIADNIQKEARNATILFIWTDCDRE 121
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE I EV T + + +V RA+FS++ + +++A N + + +ALAV AR E+
Sbjct: 122 GEYIGTEVR--TFAKRGNPNIQVKRAQFSNIEKSHVIRAAHNPKDLDERQALAVSARMEL 179
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G A TRFQ+ QG++G IS
Sbjct: 180 DLRIGAALTRFQSLKLQGRWGLAGDALIS 208
>gi|170093393|ref|XP_001877918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647777|gb|EDR12021.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 716
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 114/203 (56%), Gaps = 5/203 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR V +D + +++ VT V GH+
Sbjct: 1 MRVLCVAEKPSIARSITGILSGGQYSTRNTGNNFVKNYDFDYPQTNSTFTVTCVSGHLTS 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF A++ WN+ +P LF APV K I R+L E L++W DCDREGE+
Sbjct: 61 QDFGEAHRKWNSCDPFALFDAPVETLIPPDKKSIERNLRTEGGRADTLMIWTDCDREGEH 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+ C + N V RARFS++ + I A + +E +R +A AV+AR +DL
Sbjct: 121 IGMEIARVCRKAKPNIV---VKRARFSAIIAQQIHHAAQHPIELDRAQAEAVEARILLDL 177
Query: 182 KVGVAFTRFQTTYFQGKYGNLDS 204
KVG AFTR QT Q ++ L+
Sbjct: 178 KVGAAFTRMQTLALQRQFAQLEG 200
>gi|334332664|ref|XP_003341626.1| PREDICTED: DNA topoisomerase 3-alpha [Monodelphis domestica]
Length = 976
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
+VL VAEK A IA +LSG ++ ++ L + + +TSV GH+ D
Sbjct: 38 RVLCVAEKNDAAKGIADLLSGSRMRRKEG-----------LSVNVTMVMTSVSGHLLAHD 86
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
F ++ W + NPL LF+A + K V I R L +E + C LV+W DCDREGENI
Sbjct: 87 FQMPFRKWQSCNPLVLFEAQIEKYCPENFVDIKRTLEKEVQQCQSLVIWTDCDREGENIG 146
Query: 125 FEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
FE+I C + N +V RARFS +TE + A +L EP++ + AVD RQE+DL++
Sbjct: 147 FEIIHVCKAVKPN---LRVFRARFSEITEHAVKTACQHLTEPDQRVSDAVDVRQELDLRI 203
Query: 184 GVAFTRFQTTYFQ 196
G AFTRFQT Q
Sbjct: 204 GAAFTRFQTLRLQ 216
>gi|426237677|ref|XP_004012784.1| PREDICTED: DNA topoisomerase 3-alpha [Ovis aries]
Length = 1002
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K+L VAEK A IA +LSGG++ R+ + +++EFD G + + +TSV GH+
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +EAR C LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREARQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FEVI C + + +V RARFS +T + + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEVIHVCKAVKPS---LQVLRARFSEITARAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVG 184
L++G
Sbjct: 212 LRIG 215
>gi|358334208|dbj|GAA52642.1| DNA topoisomerase III [Clonorchis sinensis]
Length = 887
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 103 EARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNL 162
+A+ L+LWLDCD+EGENICFEVI+C + V +++ RA FS++T++++ A+ NL
Sbjct: 2 QAKNSDTLILWLDCDKEGENICFEVIDCV-YSVMIHPKRIFRAHFSAITDEELSNALRNL 60
Query: 163 VEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+PN+NE+L+VDARQE+DL++G AFTRFQT +FQGKYGNL+S +S
Sbjct: 61 RQPNKNESLSVDARQELDLRIGCAFTRFQTKFFQGKYGNLNSNLVS 106
>gi|393217722|gb|EJD03211.1| prokaryotic type I DNA topoisomerase [Fomitiporia mediterranea
MF3/22]
Length = 1081
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 115/198 (58%), Gaps = 5/198 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR + + +D + + + VT+V GH+
Sbjct: 1 MRVLCVAEKPSIARSITGILSGGQYNTRATRNKYIKNYDFDYPQTRSTFTVTAVSGHLME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF AY+ W + +P LF+APV + I +L +EAR L++W DCDREGEN
Sbjct: 61 HDFDEAYRSWGSCDPFTLFEAPVIARIAGDNKTIEENLKKEARRADELMIWTDCDREGEN 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I EV+ C V +V RARFS++ + I +A N ++ +A AV+AR +DL
Sbjct: 121 IGAEVVRVCRKVNVGI---RVTRARFSAIIPQQIHRAAQNPGLLDQAQADAVEARTILDL 177
Query: 182 KVGVAFTRFQTTYFQGKY 199
++G AFTR QT Q ++
Sbjct: 178 RLGAAFTRMQTLNLQRRF 195
>gi|339245545|ref|XP_003378698.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
gi|316972379|gb|EFV56057.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
Length = 870
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 9/220 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+VL VAEK + +IA +LS G++ R+ ++ ++EF+ G + TSV GH+
Sbjct: 3 RVLNVAEKNDASRTIAQILSRGQMNRREGFSKYNKIYEFNCTVFGELCRMVFTSVSGHLL 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y++W + +LF APV K S + R L E R LV+W DCDREGE
Sbjct: 63 NLDFDSIYRNWQSVPVDELFTAPVRKCCSPDMQPVLRTLQAEVRMVDLLVIWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NI FEVI +V + V RA FS +T + I +A+ +L EPN + AVD RQE+DL
Sbjct: 123 NIGFEVIGVC-LEVKPS-LVVKRAVFSELTSQAITRALASLTEPNALLSDAVDCRQEMDL 180
Query: 182 KVGVAFTRFQT----TYFQGKYGNLDSRFISLVFSSLFLI 217
+ G AFTRFQT F+ + G+ + S F +L L+
Sbjct: 181 RTGAAFTRFQTLRLRDTFKRQLGDKLISYGSCQFPTLGLV 220
>gi|302406450|ref|XP_003001061.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261360319|gb|EEY22747.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 658
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMF--LGSHAYIKVTSVVG 58
++VL VAEKPSI+ ++ LSGG+ TR + T+ + F+ F + + +T+V G
Sbjct: 1 MRVLCVAEKPSISKAVTDHLSGGQAQTRNTNDRFTKNYCFNFNFGPPWNQCDVTMTAVRG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ ++F PA ++W P LF AP+ ++ K + ++ Q+AR C L++W DCDR
Sbjct: 61 HLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLIIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGENI E++ + +V RA+FS++ +++A NLV+ + +A AVDAR E
Sbjct: 121 EGENIGREIVGLA--KKGKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQADAVDARME 178
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRF TT + G L IS
Sbjct: 179 LDLRIGYAFTRFLTTNLRTLGGPLVEMIIS 208
>gi|147797586|emb|CAN71431.1| hypothetical protein VITISV_040319 [Vitis vinifera]
Length = 1769
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 80/129 (62%), Gaps = 33/129 (25%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K LMVAEKPS ALSI + LS G + TR++S EV EF+G F GS+A KVTS
Sbjct: 461 KFLMVAEKPSSALSIXSALSDGHMSTRRSSIEVXEFNGTFXGSNAQYKVTS--------- 511
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
ESNPK HIC+ L+QEAR CGHLVLWLDCDREG+NIC
Sbjct: 512 ------------------------ESNPKAHICKRLSQEARDCGHLVLWLDCDREGDNIC 547
Query: 125 FEVIECTGF 133
FEV+ECTGF
Sbjct: 548 FEVVECTGF 556
>gi|346971576|gb|EGY15028.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 760
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMF--LGSHAYIKVTSVVG 58
++VL VAEKPSI+ ++ LSGG+ TR + T+ + F F + + +T+V G
Sbjct: 1 MRVLCVAEKPSISKAVTDHLSGGQSQTRNTNDRFTKNYCFSFNFGPPWNQCDVTMTAVRG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ ++F PA ++W P LF AP+ ++ K + ++ Q+AR C L++W DCDR
Sbjct: 61 HLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLIIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGENI E++ + +V RA+FS++ +++A NLV+ + +A AVDAR E
Sbjct: 121 EGENIGREIVGLA--KKGKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQADAVDARME 178
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRF TT + G L IS
Sbjct: 179 LDLRIGYAFTRFLTTNLRNLGGPLVEMIIS 208
>gi|443894350|dbj|GAC71698.1| DNA topoisomerase III alpha [Pseudozyma antarctica T-34]
Length = 1780
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGSHAYI--KVTSVVG 58
+++L VAEKPSIA SIA +L+GG R + ++F G + VTSV G
Sbjct: 806 MRILCVAEKPSIAKSIAGILAGGHPSNRPGKDKFCRNYDFQYRMPGVQGMVDMTVTSVRG 865
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF P Y+ W + +P DLF APV S+ I +L EAR L++W DCDR
Sbjct: 866 HLTNADFGPEYKAWYSCSPADLFTAPVLTNVSDDAKAIGLNLRNEARNADALMIWTDCDR 925
Query: 119 EGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I E++ +V RR +V RARFS++ + I A N VE + A AV++R
Sbjct: 926 EGEHIGSEIVA----EVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESR 981
Query: 177 QEIDLKVGVAFTRFQTTYFQ 196
++DL++G AFTR QT Q
Sbjct: 982 IQLDLRIGAAFTRMQTLALQ 1001
>gi|391328844|ref|XP_003738893.1| PREDICTED: DNA topoisomerase 3-alpha [Metaseiulus occidentalis]
Length = 689
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 118/212 (55%), Gaps = 10/212 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYI--KVTSVVG 58
+KVL VAEK A +IA +LS G T +++EF + A + ++TS G
Sbjct: 1 MKVLHVAEKNDAAKNIAAILSNGNHRTCDGLCRYNKIYEFTMPHFRNEANVSARMTSASG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAP-VHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
H+ FP Y+DWN+ +PL LF AP + K E+ I R L +E + C HL++W D D
Sbjct: 61 HILNFAFPDQYKDWNSIDPLVLFDAPLIQKCETETAEQIRRTLEREIKRCKHLIIWTDND 120
Query: 118 REGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
REGE I FE+I+ C + N +V RA+FS +T I +A+ +L EPN+ AV R
Sbjct: 121 REGEAIGFEIIDICKRVEPN---VRVWRAKFSEITRSSIERALNSLQEPNQLLNYAVLVR 177
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++DL++G AFTR QT ++ S +S
Sbjct: 178 SQLDLRIGAAFTRLQTMRVGRRFSATRSNVLS 209
>gi|332019151|gb|EGI59663.1| DNA topoisomerase 3-alpha [Acromyrmex echinatior]
Length = 1005
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 7/152 (4%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHK--AESNPKVHICRHLNQEARGCGHL 110
+TSV GH+ DF AY+ W++ +PL+LF APV K E N + +I R L +EAR C L
Sbjct: 3 MTSVSGHLLGYDFTNAYRKWHSCHPLNLFDAPVSKRCVEENHE-NIKRTLEREARFCNAL 61
Query: 111 VLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNE 169
++W DCDREGENI FE+I+ C + N +V+RA+FS +T + +A+ NLV+P++
Sbjct: 62 IIWTDCDREGENIGFEIIQVCQAIKPN---IRVYRAKFSEITRSSVERALQNLVQPDKAM 118
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
+ AVD R E+DL++G AFTRFQT Q + N
Sbjct: 119 SDAVDVRSELDLRIGAAFTRFQTLRLQKVFPN 150
>gi|428178558|gb|EKX47433.1| hypothetical protein GUITHDRAFT_50898, partial [Guillardia theta
CCMP2712]
Length = 596
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAST------EVHEFDGMFLGSH--AYIKVTSVV 57
VL +AEKPS+A ++AT+LS G+ +R +H+F F + + I TSV+
Sbjct: 1 VLCIAEKPSVANTVATILSNGRKRSRSNPAGHAPMCRIHDFFYHFQPARRKSLISFTSVI 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKA--ESNPKVHICRHLNQEARGCGHLVLWLD 115
GHV ++F + S+P +LF A V K S + + RHL A G +L LWLD
Sbjct: 61 GHVEAMEF----DEDTGSDPRNLFGARVKKVFETSVEEEEVDRHLLSLAEGRQYLFLWLD 116
Query: 116 CDREGENICFEVIE---CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
CDREGENICFE++ G+ ++D V RARFS+++ + ++ + +PN EA+A
Sbjct: 117 CDREGENICFEILRLFRSRGYFLSDD--VVFRARFSALSSDSLKRSFSSPGKPNEEEAMA 174
Query: 173 VDARQEIDLKVGVAFTRFQTTYF 195
VDARQE+DLKVGV FTR T F
Sbjct: 175 VDARQEMDLKVGVTFTRLLTRRF 197
>gi|308158051|gb|EFO60919.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 973
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 1/203 (0%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPSIA I+ G S + F F GS TSV GHVF +DF
Sbjct: 2 ILLIAEKPSIAEMISRNYGEGAKKLDSMSFPTYTFVQSFEGSKETFMCTSVAGHVFEIDF 61
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+ + + VH + ++ + +HL L+L LD DREGENICF
Sbjct: 62 DAEFNGSSVPQERLFERGHVHYSFTDSGSTVAKHLKSIGGKATQLILCLDNDREGENICF 121
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ + R + RARFS+VT+ +I A NL +P++N + AV+ARQE+DLK+GV
Sbjct: 122 EVLKVLKPTLRSNCR-IRRARFSAVTKAEIHNAFCNLDKPDQNLSDAVEARQELDLKIGV 180
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT + ++ +L S IS
Sbjct: 181 AFTRFQTAHLHAQFADLQSSVIS 203
>gi|326474803|gb|EGD98812.1| DNA topoisomerase III [Trichophyton tonsurans CBS 112818]
Length = 630
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR----KASTEVHEFDGMF---LGSHAYIKVTSVV 57
K+L VAEKP+IA +A LSGG++ T + HEFD F GS + + +TSV+
Sbjct: 4 KILCVAEKPAIAKLVAQHLSGGRIRTSGIEGNQYVKNHEFDFTFGPPWGSCSVV-MTSVL 62
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF P Y++WN+ NP LF A V A + I R++ ++AR L +W DCD
Sbjct: 63 GHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIKRQARDSRALFIWTDCD 122
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I EV + + + ++ RA+FS+ +L+A +E + +A AV AR
Sbjct: 123 REGEHIGSEVRDQA--VLGNPSIEIKRAKFSNTERTHVLEAARRPIELDERQADAVAARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT Q G L R IS
Sbjct: 181 ELDLRIGAAFTRLQTLQLQTLGGALAERIIS 211
>gi|342885903|gb|EGU85855.1| hypothetical protein FOXB_03703 [Fusarium oxysporum Fo5176]
Length = 656
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 19/216 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++AT LSGG++ T R + + FD G LG + + +T V
Sbjct: 1 MRVLCVAEKPSISKAVATHLSGGRIETNNTRNKYIKNYSFDFDFGRQLG-NCSVTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +DF PA+++W P LF AP+ + S K I ++L +AR LV+W DCD
Sbjct: 60 GHLTNVDFTPAHKNWYQPPPESLFTAPIVTSVSEDKKTIAQNLESQARYAQALVIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
REGE+I E++E AR+ +V RARFS+V ++ A NL + + A
Sbjct: 120 REGEHIGNEIVEA-------ARKGKPGIQVLRARFSNVERAHVISAAKNLATLDERQVHA 172
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTRF T + G ++ +S
Sbjct: 173 VSARIELDLRIGYAFTRFLTNNLRPLGGPMEKLTLS 208
>gi|241594082|ref|XP_002404244.1| DNA topoisomerase III, putative [Ixodes scapularis]
gi|215502316|gb|EEC11810.1| DNA topoisomerase III, putative [Ixodes scapularis]
Length = 670
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 123/211 (58%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEK A +++ ++S G R + +++EFD ++ + +TSV GH+
Sbjct: 47 MRVLNVAEKNDAAKNLSEIMSRGSYRRRDGLSVYNKIYEFDYNLFNTNCKMVMTSVSGHL 106
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDRE 119
L+F Y+ W++ +P++LF APV + + I L +E R C LV+W DCDRE
Sbjct: 107 LTLEFVSDYRKWHSCSPVELFHAPVIMSCGDKNYEKIKETLEKEIRYCDALVIWTDCDRE 166
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GENI F++I C + R +V+RARFS +T + + +A NL +P+ AV+ R+E
Sbjct: 167 GENIGFQIISVCRKVK---PRVRVYRARFSEITPQAVARACQNLADPDPKLNAAVEVRRE 223
Query: 179 IDLKVGVAFTRFQTTYFQGKY-GNLDSRFIS 208
+DL++G AFTR QT + ++ L R +S
Sbjct: 224 LDLRIGAAFTRLQTLRLKREFPQQLHDRLVS 254
>gi|159119151|ref|XP_001709794.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437911|gb|EDO82120.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 973
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPSIA I+ G S + F F GS TSV GHVF +DF
Sbjct: 2 ILLIAEKPSIAEMISRNYGEGAKKLDNVSFPTYTFVQSFEGSKETFMCTSVAGHVFEIDF 61
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
+ + VH + ++ + +HL L+L LD DREGENICF
Sbjct: 62 DAELNGSSVPQERLFERGHVHYSFTDSGSTVAKHLKSIGGKAMQLILCLDNDREGENICF 121
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV++ + R V RARFS+VT+ +I A NL +P++N + AV+ARQE+DLK+GV
Sbjct: 122 EVLKVLKPTLRSDCR-VRRARFSAVTKAEIQNAFRNLDKPDQNLSDAVEARQELDLKIGV 180
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
AFTRFQT + ++ +L S IS
Sbjct: 181 AFTRFQTAHLHAQFADLQSSVIS 203
>gi|326477792|gb|EGE01802.1| DNA topoisomerase III [Trichophyton equinum CBS 127.97]
Length = 630
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR----KASTEVHEFDGMF---LGSHAYIKVTSVV 57
K+L VAEKP+IA +A LSGG++ T + HEFD F GS + + +TSV+
Sbjct: 4 KILCVAEKPAIAKLVAQHLSGGRIRTSGIEGNQYVKNHEFDFTFGPPWGSCSVV-MTSVL 62
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF P Y++WN+ NP LF A V A + I R++ ++AR L +W DCD
Sbjct: 63 GHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIKRQARDSRALFIWTDCD 122
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I EV + + + ++ RA+FS+ +L+A +E + +A AV AR
Sbjct: 123 REGEHIGSEVRDQA--VLGNPSIEIKRAKFSNTERTHVLEAARRPIELDERQADAVFARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT Q G L R IS
Sbjct: 181 ELDLRIGAAFTRLQTLQLQTLGGALAERIIS 211
>gi|295664843|ref|XP_002792973.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278494|gb|EEH34060.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 632
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLG--SHAYIKVTSVVG 58
K+L VAEKP+IA ++A LSGG L T V +EFD F + VTSV+G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTVTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV + K I ++ AR L +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q + + +V RARFS+ +L A N +E + +A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRIIS 211
>gi|319921909|gb|ADV78573.1| DNA topoisomerase III alpha [Leishmania donovani]
Length = 947
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 114/193 (59%), Gaps = 9/193 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A +A LSGG T + + V+EF F G + VTSV GH+
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGSYRTVPSQSRFNPVYEFK--FEGK--TMLVTSVAGHLMED 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
FPP ++ + LF AP+ K + ++L A LVLWLDCDREGENI
Sbjct: 61 QFPPNTKNRSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADALVLWLDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + +V RA FS++T +D+L A+ NL P++ + AV+ARQE+DL++
Sbjct: 121 CFEVMQVV--QSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRI 178
Query: 184 GVAFTRFQTTYFQ 196
G AFTR+QT F+
Sbjct: 179 GAAFTRYQTVKFR 191
>gi|444525410|gb|ELV14017.1| DNA topoisomerase 3-alpha [Tupaia chinensis]
Length = 967
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 21/193 (10%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL VAEK A IA +LS G++ A + +TSV GH+ D
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRNVA-----------------MVMTSVSGHLLVHD 77
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
F ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGENI
Sbjct: 78 FQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIG 137
Query: 125 FEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
FE+I CT + + +V RARFS +T + A NL EP++ + AVD RQE+DL++
Sbjct: 138 FEIIHVCTAVKPS---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRI 194
Query: 184 GVAFTRFQTTYFQ 196
G AFTRFQT Q
Sbjct: 195 GAAFTRFQTLRLQ 207
>gi|407399794|gb|EKF28434.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 917
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 13/201 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A ++ VLS G + + V EFD F G + TSV GH+
Sbjct: 5 LNVAEKPSVAKELSFVLSNGTCRMGNSLSRFNPVFEFD--FEGKQ--MLCTSVAGHLMND 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+FPP + W + ++LF A + K + ++L R +LVLW+DCDREGENI
Sbjct: 61 EFPPETRSWQSYPLVNLFTASITKHVKPEMEPVKKNLETLGRRASNLVLWMDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
CFEV++ V R ++ RA FS++T +D+L A+ +L PN+ + AV+ARQEIDL
Sbjct: 121 CFEVMQV----VQGVNRSINICRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDL 176
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G F+RFQT F+ + +
Sbjct: 177 RIGAVFSRFQTIKFRDAFSGM 197
>gi|358255314|dbj|GAA57027.1| DNA topoisomerase III, partial [Clonorchis sinensis]
Length = 1106
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 36 EVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH 95
+++EF F G+HA + +TSV GH+ +F PA++ W+AS+PL LF APV K
Sbjct: 9 KIYEFTYNFGGAHATMVMTSVSGHLLNYEFSPAFKSWHASDPLVLFDAPVSKGVIKDGEP 68
Query: 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKD 154
I L +E C L++W DCDREGENI E++ C + N +V RA+FS +T
Sbjct: 69 IKETLQREVGRCNRLIIWTDCDREGENIGVEIVNVCREVKPNI---EVFRAKFSEITPVA 125
Query: 155 ILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQT 192
I +A+ L P+ + AVD RQE+DL++G AFTRFQT
Sbjct: 126 ITRAVNELSVPDYRVSAAVDGRQELDLRIGAAFTRFQT 163
>gi|67536770|ref|XP_662159.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|40741708|gb|EAA60898.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|259482615|tpe|CBF77265.1| TPA: DNA topoisomerase III (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 629
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 122/214 (57%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTE------VHEFDGMFLGSHAYIKVT 54
MA KVL VAEKP+IA ++A LSGG++ T+ + V +F+ ++ + +T
Sbjct: 1 MAGTKVLCVAEKPAIAKAVAQHLSGGRMETKNVTGNRFVKNYVFDFNFGNQWGNSSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ L+F Y W + P LF+APV A + K I ++ ++A +LV+W
Sbjct: 61 SVLGHLTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYLVIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I EV + + + R V RA+F++ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEVRDQA--KAGNGRIVVKRAKFNNTEKIHVLNAARSLIELDERQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR T Q + L + IS
Sbjct: 179 ARIELDLRIGAAFTRLLTLQLQNLHATLTQKVIS 212
>gi|390601900|gb|EIN11293.1| prokaryotic type I DNA topoisomerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 708
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 8/201 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ +L VAEKPS++ S+A +LSGG+ TR + + +D + ++A + +T V GH+
Sbjct: 1 MHILCVAEKPSMSRSLAVILSGGRYTTRATRNKFIKNYDFDYPQANATMTMTCVSGHLME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFPP Y W + NP LF APV S+ I +L+ EAR L++W DCDREGE+
Sbjct: 61 HDFPPDY-GWRSCNPFALFDAPVQTKASD--ASIVSNLSAEARRAQQLMIWTDCDREGEH 117
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I EV C + R V RARFS+V + I A + VE ++ +A AV+AR +DL
Sbjct: 118 IGSEVAAVCVK---ANPRIVVKRARFSAVIAQQIHNAAQHPVELDQAQADAVEARIILDL 174
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G +FTR QT Q + +
Sbjct: 175 RIGASFTRMQTFALQRSFAEI 195
>gi|378755338|gb|EHY65365.1| hypothetical protein NERG_01811 [Nematocida sp. 1 ERTm2]
Length = 772
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 8/196 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+++L VAEKPS+A S+A +LSGG K + V FDG G+ + TSV+GH+
Sbjct: 1 MRILNVAEKPSVAKSLADILSGGAARPTKGLNKYCSVFRFDGEVEGARCQMVFTSVLGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ L+F W +P +LF+ + + + + + + Q + C L++W DCDREG
Sbjct: 61 YSLEFERK-TSWTEIDPSELFEDKLKWSIPSTMEGVFKTIKQLSTECDMLIIWTDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI +V V D ++V RARFS ++ D++ AM NL N NE+ AV++R EID
Sbjct: 120 ENIGMQVANV----VKDRIQRVKRARFSGLSRYDVMHAMENLGALNINESKAVESRIEID 175
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G A TR QT Q
Sbjct: 176 LRIGAALTRLQTLQLQ 191
>gi|56900852|gb|AAW31721.1| DNA topoisomerase III alpha [Trypanosoma cruzi]
Length = 921
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A ++ VLS G + + V EFD F G + TSV GH+
Sbjct: 5 LNVAEKPSVAKELSLVLSNGTCRMGNSLSRFNPVFEFD--FEGKQ--MLCTSVAGHLMND 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+FPP + W ++LF A + K + ++L R +LVLW+DCDREGENI
Sbjct: 61 EFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSNLVLWMDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + + RA FS++T +D+L A+ +L PN+ + AV+ARQEIDL++
Sbjct: 121 CFEVMQVV--QGVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRI 178
Query: 184 GVAFTRFQTTYFQGKYGNL 202
G F+RFQT F+ + +
Sbjct: 179 GAVFSRFQTIKFRDAFSGM 197
>gi|71651605|ref|XP_814477.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70879452|gb|EAN92626.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A ++ VLS G + + V EFD F G + TSV GH+
Sbjct: 5 LNVAEKPSVAKELSLVLSNGTCRMGNSLSRFNPVFEFD--FEGKQ--MLCTSVAGHLMND 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+FPP + W ++LF A + K + ++L R +LVLW+DCDREGENI
Sbjct: 61 EFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSNLVLWMDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + + RA FS++T +D+L A+ +L PN+ + AV+ARQEIDL++
Sbjct: 121 CFEVMQVV--QGVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRI 178
Query: 184 GVAFTRFQTTYFQGKYGNL 202
G F+RFQT F+ + +
Sbjct: 179 GAVFSRFQTIKFRDAFSGM 197
>gi|71654804|ref|XP_816014.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70881114|gb|EAN94163.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VAEKPS+A ++ VLS G + + V EFD F G + TSV GH+
Sbjct: 5 LNVAEKPSVAKELSLVLSNGTCKMGNSLSRFNPVFEFD--FEGKQ--MLCTSVAGHLMND 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+FPP + W ++LF A + K + ++L R +LVLW+DCDREGENI
Sbjct: 61 EFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRASNLVLWMDCDREGENI 120
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
CFEV++ Q + + RA FS++T +D+L A+ +L PN+ + AV+ARQEIDL++
Sbjct: 121 CFEVMQVV--QGVNRSISICRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRI 178
Query: 184 GVAFTRFQTTYFQGKYGNL 202
G F+RFQT F+ + +
Sbjct: 179 GAVFSRFQTIKFRDAFSGM 197
>gi|238578791|ref|XP_002388836.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
gi|215450488|gb|EEB89766.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
Length = 421
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 7/206 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR + + + ++D + + ++ VT+V GH+
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGRFQTRNTAVKYIKDYDFDYPQTRSHFTVTAVAGHLTE 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
LDF ++ W + +P DLF AP + + R++ EA+ L++W DCDREGE+
Sbjct: 61 LDFTDTHRKWGSCDPFDLFDAPTVSRVKDDNKGMERNIFNEAKQAATLMIWTDCDREGEH 120
Query: 123 ICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
I E+ + A R V RARF+++ + I A + V+ + AV++R ID
Sbjct: 121 IGSEIAKV----AKRANRNIIVKRARFNAIVAQQIHHAAQHPVDLDIRLVDAVESRIVID 176
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRF 206
LK+G AFTR+QTT + + G D +
Sbjct: 177 LKIGSAFTRYQTTNIKNRLGLSDGLY 202
>gi|294880144|ref|XP_002768906.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239871904|gb|EER01624.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 605
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 114/201 (56%), Gaps = 17/201 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
++ L VAEK S+A + VL GG + + VT+V GH+ L
Sbjct: 14 IRALNVAEKNSVAREMCRVLGGGVIPNGNPPV--------------MMVVTAVRGHLMGL 59
Query: 64 DFPPAYQD-WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF Y+ W+ +P L+ AP+ K+ ++ + +L + AR C LVLWLDCDREGE
Sbjct: 60 DFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRRLARTCDWLVLWLDCDREGEA 119
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +EVIE + +AR V+RA FS++T D+ +A NL PN + A AVDARQEIDL+
Sbjct: 120 IAYEVIEIA--REANARLNVYRANFSALTHADLTRACLNLARPNPHLAAAVDARQEIDLR 177
Query: 183 VGVAFTRFQTTYFQGKYGNLD 203
+G +FTRF T ++ + L+
Sbjct: 178 IGASFTRFLTLRYKRRLPLLE 198
>gi|328766432|gb|EGF76486.1| hypothetical protein BATDEDRAFT_14853, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 612
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 12/207 (5%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGSHAYIKVTSVVGHVFR 62
+L VAEKPSI+ S+A +L G+ T + + +EF G + +T+++GH+
Sbjct: 1 ILCVAEKPSISKSVAEILGDGRFETSSTANKYIKNYEFSQQCQGRECTVVMTALLGHLME 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF P ++ W + LF AP+ K + +L ++R LV+W DCDREGEN
Sbjct: 61 SDFSPEWKSWRMATLQHLFGAPIQKKVKQDMKGLADNLRAKSRQSEMLVIWTDCDREGEN 120
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I EV++ C N V RARFS + + A LVE + A AVDAR E+DL
Sbjct: 121 IGAEVVQVCRETNPNII---VKRARFSVIKQ-----AWNRLVELDWRAAAAVDARTELDL 172
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
++G FTRFQT QG + L + +S
Sbjct: 173 RIGAVFTRFQTLQLQGHFKELSEQILS 199
>gi|226293455|gb|EEH48875.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 632
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLG--SHAYIKVTSVVG 58
K+L VAEKP+IA ++A LSGG L T V +EFD F + +TSV+G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV + K I ++ AR + +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKAIFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q + + +V RARFS+ +L A N +E + +A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRIIS 211
>gi|327308726|ref|XP_003239054.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326459310|gb|EGD84763.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 630
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 10/211 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR----KASTEVHEFDGMF---LGSHAYIKVTSVV 57
K+L VAEKP+IA +A LSGG++ T + +EFD F GS + + +TSV+
Sbjct: 4 KILCVAEKPAIAKLVAQHLSGGRIRTSGIEGNQYVKNYEFDFTFGPPWGSCSVV-MTSVL 62
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF P Y++WN+ NP LF A V A KV I R++ ++AR L +W DCD
Sbjct: 63 GHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKVGIARNIKRQARDSRALFIWTDCD 122
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I EV + + + ++ RARFS+ +L+A + + + AV AR
Sbjct: 123 REGEHIGSEVRDQA--VLGNPSIEIKRARFSNTERTHVLEAARRPIGLDERQVDAVAARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT Q G L + IS
Sbjct: 181 ELDLRIGAAFTRLQTLQLQTLGGALAEKIIS 211
>gi|388853372|emb|CCF52992.1| related to DNA topoisomerase III alpha [Ustilago hordei]
Length = 986
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF----LGSHAYIKVTSVVG 58
+++L VAEKPSIA SIA +L+ G R + +D + + + +TSV G
Sbjct: 1 MRILCVAEKPSIAKSIANILAHGHTSNRPGKDKYCRNYDFQYRMPDVQGMVDMTMTSVRG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF P ++ W + P LF+AP+ SN I ++L EAR +++W DCDR
Sbjct: 61 HLTEADFGPQHKGWRSCQPSHLFEAPIITGLSNDAKSIGQNLRMEARNADAVMIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I E++E +V RR +V RARFS++ + I A N VE + A AV++R
Sbjct: 121 EGEHIGSEIVE----EVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESR 176
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
++DL++G AFTR QT Q +
Sbjct: 177 IQLDLRIGAAFTRMQTMALQNR 198
>gi|299752369|ref|XP_001830882.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
gi|298409801|gb|EAU90946.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
Length = 929
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 117/209 (55%), Gaps = 17/209 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHAYIKVTSVVGHV 60
++VL VAEKPSI+ SI +LSGG+ T + + +EFD + + A VT V GH+
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQFRTTNTALGYIKNYEFD--YPQTRATFVVTCVTGHL 58
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DF ++ W++ +P LF A V K I +L +AR L++W DCDREG
Sbjct: 59 TSTDFTEQHRGWHSCDPSALFDAEVQTFVPQDKKAIETNLKNQARYADMLMIWTDCDREG 118
Query: 121 ENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
E+I EV VN RR +V RARFS++ + I +A + VE + +A AV+A
Sbjct: 119 EHIGMEV-------VNVCRRVRPNIQVKRARFSAIIAQQIHRAAQHPVELDLRQADAVEA 171
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDS 204
R +DLK+G AFTR QT Y Q ++ + S
Sbjct: 172 RILLDLKIGAAFTRLQTLYLQNRFQQITS 200
>gi|367027160|ref|XP_003662864.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
gi|347010133|gb|AEO57619.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
Length = 668
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 10/221 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMF--LGSHAYIKVTSVVGH 59
+VL VAEKPSIA ++A LSGG T R A + + FD F H + +T+V GH
Sbjct: 3 RVLCVAEKPSIAKAVAGHLSGGHYQTSNTRDAYIKNYTFDFDFGPPWGHCSVTMTAVKGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ ++FP Y+ W P LF AP+ S+ I +++ +AR LV+W DCDRE
Sbjct: 63 LTTVEFPGDYKQWEYPPPDRLFDAPIMTVVSSDSKSIAKNIEDQARHASALVIWTDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE+I E+ + + +AR +V RARFS+V IL A L + + AV AR E+
Sbjct: 123 GEHIGSEIRDAA--RKGNARIQVKRARFSNVERAHILSAARRLTALDDRQVDAVSARIEL 180
Query: 180 DLKVGVAFTRFQTTYFQ---GKYGNLDSRFISLVFSSLFLI 217
DL++G AFTRF T + G NL + S F +L +
Sbjct: 181 DLRIGYAFTRFLTLNLRPLGGPLSNLTLSYGSCQFPTLGFV 221
>gi|302687094|ref|XP_003033227.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
gi|300106921|gb|EFI98324.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
Length = 611
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 3/195 (1%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+K+L VAEKPSI+ SI+ +LSGG+L TR + +D + +A + VT V GH+ +
Sbjct: 1 MKILCVAEKPSISKSISQILSGGRLSTRSTQCNYIKNYDFDYAPRNARMTVTCVAGHLTQ 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF ++ W++ P+ LF+A V+ K I ++L EAR +++W DCDREGE
Sbjct: 61 QDFYDTHRKWHSCAPIALFEADVNTFIPPDKKAIEKNLLAEARSADIVMIWTDCDREGEY 120
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +EV+ + R V RA FS++ +DI A N E ++ + AV AR +DLK
Sbjct: 121 IGWEVVSVCKRAKRNIR--VERAHFSAIIARDIHNAAQNPQELDQRQVDAVAARTVLDLK 178
Query: 183 VGVAFTRFQTTYFQG 197
+G AFTR QT Q
Sbjct: 179 IGAAFTRMQTMGLQA 193
>gi|154278056|ref|XP_001539853.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
gi|150413438|gb|EDN08821.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
Length = 632
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLGSHAYIKV--TSVVG 58
K+L VAEKP+IA +A LSGG V +EFD F V TSV+G
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRAVSIRGNVFVKNYEFDFTFAPPWGQCSVIMTSVLG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV + + + I ++ AR L +W DCDR
Sbjct: 64 HLTSLDFDSQYRGWNSCPPGLLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q ++ R ++ RARFS+ IL+A N +E + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSS 213
E+DL++G AFTR QT + G L+ R IS V S
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRVISYVPGS 216
>gi|345305221|ref|XP_001510142.2| PREDICTED: DNA topoisomerase 3-alpha [Ornithorhynchus anatinus]
Length = 994
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 98/162 (60%), Gaps = 4/162 (2%)
Query: 36 EVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH 95
+++EFD G + + +TSV GH+ DF ++ W + NPL LF+A + K V
Sbjct: 64 KIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLILFEAEIEKYCPENFVD 123
Query: 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKD 154
I R L +EA+ C L++W DCDREGENI FEVI C + + +V RARFS +T +
Sbjct: 124 IKRTLEREAQQCQTLMIWTDCDREGENIGFEVIHVCKAVKPS---LQVFRARFSEITPRA 180
Query: 155 ILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
+ A L EP++ + AVD RQE+DL++G AFTRFQT Q
Sbjct: 181 VQLACETLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQ 222
>gi|367050678|ref|XP_003655718.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
gi|347002982|gb|AEO69382.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
Length = 667
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 117/226 (51%), Gaps = 22/226 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMF--LGSHAYIKVTSVVGHV 60
+L VAEKPSI+ ++A LSGG T R A + + FD F + +T+V GH+
Sbjct: 4 ILCVAEKPSISKAVAGHLSGGHYQTTNTRDAYIKNYTFDFDFGPPWGRCSVTMTAVKGHL 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
L+FPP ++ W P LF APV HI +++ +AR LV+W DCDREG
Sbjct: 64 TALEFPPDFKQWEYPPPDRLFDAPVQTVIPTDNKHIAKNIEDQARRASALVIWTDCDREG 123
Query: 121 ENICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
E+I G ++ DA RK + RARFS+V IL A L+ + + AV
Sbjct: 124 EHI--------GSEIRDAARKGNGQIQIKRARFSNVERAHILSAARRLIALDEKQVDAVS 175
Query: 175 ARQEIDLKVGVAFTRFQTTYFQ---GKYGNLDSRFISLVFSSLFLI 217
AR E+DL++G AFTRF T + G NL + S F +L +
Sbjct: 176 ARIELDLRIGYAFTRFLTLNLRPLGGPMSNLTISYGSCQFPTLGFV 221
>gi|71016361|ref|XP_758895.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
gi|46098326|gb|EAK83559.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
Length = 1325
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 11/202 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGSHAYIKVT--SVVG 58
+++L VAEKPSIA SIA +L+ G R + ++F G + +T SV G
Sbjct: 96 MRILCVAEKPSIAKSIANILARGHASNRPGKDKFCRNYDFQYRMPGVQGMVDMTMTSVRG 155
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF P ++ W + P DLFQAPV S+ I +L EAR +++W DCDR
Sbjct: 156 HLTNTDFGPQHKAWFSCPPADLFQAPVITNLSDDAKDIGTNLRLEARNADAVMIWTDCDR 215
Query: 119 EGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I E++ +V RR +V RARFS++ + I A N VE + A AV++R
Sbjct: 216 EGEHIGSEIVA----EVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESR 271
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
++DL++G AFTR QT Q +
Sbjct: 272 IQLDLRIGAAFTRMQTLALQNR 293
>gi|121710650|ref|XP_001272941.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
gi|119401091|gb|EAW11515.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
Length = 629
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT------RKASTEVHEFDGMFLGSHAYIKVT 54
M ++L VAEKP+IA ++A LSGG + T + + EF+ + +T
Sbjct: 1 MTVPRILCVAEKPAIAKAVAQHLSGGSMRTISIRGNQYVKNYLFEFNFGDPWGTCSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ LDF Y+ W + P LF+APVH+ K I ++ +AR L +W
Sbjct: 61 SVLGHLMALDFESQYKGWQSCPPGSLFEAPVHEYVETDKQPIAENIRDQARASKALFIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I EV + + R V RARFS+ +L+A L++ + N+A AV
Sbjct: 121 DCDREGEHIGTEVR--LQAKKGNGRILVKRARFSNTERAHVLRAARALIDVDENQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR Q + L + IS
Sbjct: 179 ARIELDLRIGAAFTRLQCLQLKPLSAALTDKIIS 212
>gi|405967245|gb|EKC32429.1| DNA topoisomerase 3-alpha [Crassostrea gigas]
Length = 1950
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GH+ +DF Y W + +PL LF P+ K + I R L +E R +L++
Sbjct: 3 MTSVSGHLLEMDFVGQYNKWYSCSPLSLFDLPIEKKCPDKFADIKRTLEREVRQSQYLII 62
Query: 113 WLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
W DCDREGENI EVI+ C N V+RARFS +T + + +A NLV P++ +
Sbjct: 63 WTDCDREGENIGHEVIQVCKAVNPNIP---VYRARFSEITPQAVARACSNLVPPDQRTSD 119
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQ 196
AVD RQE+DL++G AFTRFQT Q
Sbjct: 120 AVDVRQELDLRIGAAFTRFQTMRLQ 144
>gi|408398943|gb|EKJ78068.1| hypothetical protein FPSE_01529 [Fusarium pseudograminearum CS3096]
Length = 666
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 117/211 (55%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
+KVL VAEKPSI+ ++AT L+GG++ T R + + FD G LG +T V
Sbjct: 1 MKVLCVAEKPSISKAVATHLAGGRVETHNTRNKYIKNYSFDFDFGQQLG-QCSTTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +DF PA + W + P LF AP+ S+ K I ++L +AR LV+W DCD
Sbjct: 60 GHLTNVDFTPANKSWYSPPPESLFTAPIVTTISDDKKTIAQNLESQARYAQVLVIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E++E + +V RARFS++ ++ A NL + + AV R
Sbjct: 120 REGEHIGNEIVEAA--RKGKPGIRVLRARFSNIERAHVISAARNLTTLDERQVNAVATRI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTRF T + G L+ +S
Sbjct: 178 ELDLRIGYAFTRFLTNNLRKLGGPLEGLTLS 208
>gi|212527998|ref|XP_002144156.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
gi|210073554|gb|EEA27641.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
Length = 662
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT------RKASTEVHEFDGMFLGSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG T + V F+ + + +TSV+G
Sbjct: 5 RILCVAEKPAIAKAVAQHLSGGSFQTINIHGQQYVKNYVFSFNFGGAWGNCEVTMTSVIG 64
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ W + P LF+ PV + K+ I ++ ++A+ C L +W DCDR
Sbjct: 65 HLTGLEFGKEYKGWTSCPPSLLFEVPVFENVDTDKLSIAENIKKQAQYCKALFIWTDCDR 124
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV + ++ +AR +V RARFS+ +L+A +E + +A AV AR E
Sbjct: 125 EGEHIGTEVKKQA--RLGNARIEVKRARFSNTERAHVLRAAREPIELDEKQASAVAARIE 182
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL+VG AFTR QT Q LD IS
Sbjct: 183 LDLRVGAAFTRLQTLQLQTLGSPLDQGPIS 212
>gi|242785292|ref|XP_002480564.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
gi|218720711|gb|EED20130.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
Length = 660
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 8/210 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT------RKASTEVHEFDGMFLGSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG + T + V F+ + + +TSV+G
Sbjct: 5 RILCVAEKPAIAKAVAQHLSGGSMQTMNIHGQQYVKNYVFSFNFGGAWGNCEVTMTSVIG 64
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ W + P LF+ PV + + K+ I ++ ++A+ C L +W DCDR
Sbjct: 65 HLTGLEFGKEYKGWTSCPPSLLFEVPVFENVDSDKLSIADNIKKQAQYCKALFIWTDCDR 124
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV + ++ +AR +V RARFS+ +L+A +E + +A AV AR E
Sbjct: 125 EGEHIGTEVKKQA--RLGNARIEVKRARFSNTERAHVLRAAREPIELDEKQANAVAARIE 182
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL+VG AFTR QT Q LD IS
Sbjct: 183 LDLRVGAAFTRLQTLQLQTLGSPLDQGPIS 212
>gi|190347906|gb|EDK40263.2| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF---LGSHAYIKVTSVVGH 59
+K+L VAEKPSIA ++ +LSGG + R ++ V +D F + +TSV+GH
Sbjct: 1 MKILCVAEKPSIAKEVSQILSGGSVRVRNSANRYVKNYDFTFEFPTTGRCDVTMTSVLGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFPPAY WN P LF AP+ + S V+ +++ EAR +L++W DCDRE
Sbjct: 61 ITNIDFPPAY-SWNKCVPGKLFSAPIIEVVSKKDVY--KNIANEARNASNLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE I E+ + Q + R +V R++FS + +L A N V+ + N AV R
Sbjct: 118 GEFIGHEIFQAA--QSGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDLNAVAAVGCR 175
Query: 177 QEIDLKVGVAFTRF 190
EIDL+VG FTRF
Sbjct: 176 MEIDLRVGAGFTRF 189
>gi|156037882|ref|XP_001586668.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980]
gi|154698063|gb|EDN97801.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 670
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLY---TR----KASTEVHEFDGMFLGSHAYIKV 53
MAP K+L VAEKPSIA ++A L+GG TR K T +F G + +A +
Sbjct: 1 MAP-KILCVAEKPSIAKAVANHLAGGSAQASSTRNKYIKNYTFTFDFGGQWGNCNAVM-- 57
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
TSV GH+ LD P+++ W P LF +APV ++ + K I +++ +ARG L +
Sbjct: 58 TSVSGHLTSLDVAPSHRSWTDPPPKSLFFEAPVIESIAEDKKVIAQNIESQARGARALFI 117
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
W DCDREGE+I EV + + R +V RARFS++ +++A + V+ ++ + A
Sbjct: 118 WTDCDREGEHIGGEVRDQA--LKGNPRIEVKRARFSNIERAHVIQAAKHPVDLDQRQVDA 175
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTRFQTT Q G L + +S
Sbjct: 176 VAARIELDLRIGYAFTRFQTTNLQKLGGPLADKMLS 211
>gi|146415324|ref|XP_001483632.1| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF---LGSHAYIKVTSVVGH 59
+K+L VAEKPSIA ++ +LSGG + R ++ V +D F + +TSV+GH
Sbjct: 1 MKILCVAEKPSIAKEVSQILSGGLVRVRNSANRYVKNYDFTFEFPTTGRCDVTMTSVLGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFPPAY WN P LF AP+ + S V+ +++ EAR +L++W DCDRE
Sbjct: 61 ITNIDFPPAY-SWNKCVPGKLFSAPIIEVVSKKDVY--KNIANEARNASNLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE I E+ + Q+ + R +V R++FS + +L A N V+ + N AV R
Sbjct: 118 GEFIGHEIFQAA--QLGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDLNAVAAVGCR 175
Query: 177 QEIDLKVGVAFTRF 190
EIDL+VG FTRF
Sbjct: 176 MEIDLRVGAGFTRF 189
>gi|453089198|gb|EMF17238.1| DNA topoisomerase [Mycosphaerella populorum SO2202]
Length = 679
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLG-SHAYIKVTS 55
M KVL VAEKPSIA ++AT L GG+ T + + +EF F G + +TS
Sbjct: 1 MVVTKVLCVAEKPSIAKAVATHLGGGQFQTHSIAGNQYVKNYEFGFTFPGWGPCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF Y++W + +P LF AP+ ++ + +++ +AR +L +W D
Sbjct: 61 VLGHLMEQDFSAEYKNWRSRDPSALFDAPIETFVADKMKGVAKNIETKARSAHYLYIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARR---KVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
CDREGE+I E+ EC F+ N R KV RARFS+V ++ A V + +A A
Sbjct: 121 CDREGEHIGAEIREC-AFKTNARLRSAGKVVRARFSNVERNHVIDAARRPVALDEAQANA 179
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQ 196
V AR E+DL++G FTR T Q
Sbjct: 180 VYARTELDLRIGACFTRRLTISLQ 203
>gi|325089089|gb|EGC42399.1| DNA topoisomerase III [Ajellomyces capsulatus H88]
Length = 450
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLGSHAYIKV--TSVVG 58
K+L VAEKP+IA +A LSGG V +EFD F V TSV+G
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQCSVIMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ WN+ P LF APV + + + I ++ AR L +W DCDR
Sbjct: 64 HLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q ++ R ++ RARFS+ IL+A N +E + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRVIS 211
>gi|46124677|ref|XP_386892.1| hypothetical protein FG06716.1 [Gibberella zeae PH-1]
Length = 695
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
+KVL VAEKPSI+ ++AT L+GG++ T R + + FD G LG +T V
Sbjct: 1 MKVLCVAEKPSISKAVATHLAGGRVETHNTRNKYIKNYSFDFDFGQQLG-QCSTTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +DF PA + W + P LF AP+ S K I ++L +AR LV+W DCD
Sbjct: 60 GHLTNVDFTPANKSWYSPPPESLFTAPIVTTISEDKKTIAQNLESQARYAQVLVIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E++E + +V RARFS++ ++ A NL + + AV R
Sbjct: 120 REGEHIGNEIVEAA--RKGKPGIRVLRARFSNIERAHVISAARNLTTLDERQVNAVATRI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTRF T + G L+ +S
Sbjct: 178 ELDLRIGYAFTRFLTNNLRKLGGPLEGLTLS 208
>gi|167524627|ref|XP_001746649.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774919|gb|EDQ88545.1| predicted protein [Monosiga brevicollis MX1]
Length = 1562
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 113/207 (54%), Gaps = 11/207 (5%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGG--KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVG 58
MA KVLMVAEKP++A IA +L+ G + T + +F+ G +K+TSV+G
Sbjct: 1 MAITKVLMVAEKPTVAKGIAQILAPGCRREATNCTYVGLWDFNIKIEGRPCNVKLTSVLG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPV-HKAESNPKVHICRH----LNQEARGCGHLVLW 113
H+ +F AY+ W++ P +LF AP+ H P C L + AR C L++
Sbjct: 61 HLMTWEFKDAYRGWHSCAPQELFDAPLQHVVNDRPGETNCATIKTLLQKYARTCDWLIIA 120
Query: 114 LDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
D DREGENI FE+IE C N R +FS+VT +I + LV P++ + A
Sbjct: 121 TDNDREGENIGFEIIEVCRRVNRN---LDCKRMKFSAVTPGEINGCLTRLVPPDQRASQA 177
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKY 199
ARQE+DL++G FTRFQT Q Y
Sbjct: 178 CVARQELDLRIGAIFTRFQTLRLQALY 204
>gi|240280657|gb|EER44161.1| DNA topoisomerase III [Ajellomyces capsulatus H143]
Length = 630
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLGSHAYIKV--TSVVG 58
K+L VAEKP+IA +A LSGG V +EFD F V TSV+G
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQCSVIMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ WN+ P LF APV + + + I ++ AR L +W DCDR
Sbjct: 64 HLTSLEFDSRYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q ++ R ++ RARFS+ IL+A N +E + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRVIS 211
>gi|154412191|ref|XP_001579129.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121913332|gb|EAY18143.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 662
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 6/204 (2%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE---FDGMFLGSHAYIKVTSVVGH 59
P K+L VAEKPS+A A +LS G + T+K ++ + F F G + TSV GH
Sbjct: 2 PKKILCVAEKPSVAREAAKILSNGHMETKKGKSKFNNNFVFQRDFQGEDVKVVFTSVAGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
V FPP ++W LF ++ + + +L +A+ + LWLD DRE
Sbjct: 62 VLNYCFPPECKNWQTFGNTKLFDCQLNTCITANMEKVVGNLQTQAKKAFLVFLWLDNDRE 121
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE I EV E QVN+ RARFS ++ ++I+ A N NRN+A AV RQEI
Sbjct: 122 GEGISEEVEEICK-QVNE-NANYKRARFSGLSPREIIHAFNNPTPINRNDAAAVKLRQEI 179
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLD 203
DL++G AFTRFQ+ F+G N +
Sbjct: 180 DLRIGSAFTRFQSQ-FKGMLQNAE 202
>gi|169775139|ref|XP_001822037.1| DNA topoisomerase 3 [Aspergillus oryzae RIB40]
gi|238496239|ref|XP_002379355.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|83769900|dbj|BAE60035.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694235|gb|EED50579.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|391872962|gb|EIT82037.1| DNA topoisomerase III alpha [Aspergillus oryzae 3.042]
Length = 629
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 120/214 (56%), Gaps = 8/214 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMFLGSHAY--IKVT 54
M +VL VAEKP+IA +++ LSGG T + + FD F G + +T
Sbjct: 1 MTVPRVLCVAEKPAIAKAVSQHLSGGSFQTIPVRGNQYVKNYVFDFNFGGPWGTCSVTMT 60
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ L+F Y+ W + P LF+APVH + K I +++ ++A+ C L +W
Sbjct: 61 SVIGHLTTLEFERQYKGWLSCPPGALFEAPVHITVDSDKAAIAKNIQEQAKYCKALFIWT 120
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I EV + + +AR V RA+FS+ + +L A +L+E + +A AV
Sbjct: 121 DCDREGEHIGTEVRKQA--KEGNARIVVKRAKFSNTEKAHVLNAARSLIELDDLQANAVA 178
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTR QT + L + IS
Sbjct: 179 ARIELDLRIGAAFTRLQTLQLKHISEALSEKIIS 212
>gi|358057730|dbj|GAA96385.1| hypothetical protein E5Q_03052 [Mixia osmundae IAM 14324]
Length = 882
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGSHAYIK--VTSVVG 58
+K L VAEKPSIA I +LSGG+ TR + +EF G + VT+VVG
Sbjct: 2 VKCLCVAEKPSIARGITEILSGGRSRTRNGGSRFVNNYEFSYRLEGYPGFTDFVVTAVVG 61
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF A++ W + + DLF AP+ + R+L EAR L++W DCDR
Sbjct: 62 HLTANDFDDAHRGWRSCDAFDLFDAPIITFIPPKLKDVARNLQNEARTAQILMIWTDCDR 121
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I +EV + +VN R V RARFS++ I +A + V + +A AV+AR
Sbjct: 122 EGEHIGWEV-QNVCLKVN-PRLVVLRARFSAIIANQIHQACQHAVALDERQASAVEARIM 179
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL+VG A TR QT FQ + L IS
Sbjct: 180 LDLRVGAALTRLQTFNFQAAFPELQGSVIS 209
>gi|171686712|ref|XP_001908297.1| hypothetical protein [Podospora anserina S mat+]
gi|170943317|emb|CAP68970.1| unnamed protein product [Podospora anserina S mat+]
Length = 751
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 116/216 (53%), Gaps = 21/216 (9%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFD---GMFLGSHAYIKVTSVVG 58
+VL VAEKPSIA ++A LSGG+ T S T+ + F G LG + + +T+V G
Sbjct: 88 RVLCVAEKPSIAKAVAQHLSGGQYQTANTSDKYTKNYSFTFNFGPGLGD-SNVTMTAVRG 146
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +FPP Y+ W+ P LF AP+ + I R++ AR L++W DCDR
Sbjct: 147 HLTTAEFPPTYKSWSHPPPDSLFDAPITTVTTPDCKAIARNIETLARSSSVLIIWTDCDR 206
Query: 119 EGENICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
EGE+I G ++ DA K V RARFS+V IL A LV ++ + A
Sbjct: 207 EGEHI--------GSEIRDAALKGNRNIQVRRARFSNVERGHILSAARRLVALDQRQVDA 258
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTRF T +G G + IS
Sbjct: 259 VAARIELDLRIGFAFTRFLTNNLRGLGGPMGELMIS 294
>gi|403166354|ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166208|gb|EFP81802.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1124
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 112/210 (53%), Gaps = 9/210 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL----GSHAYIKVTSVVGH 59
++L VAEKPSIA S+ +LSG + TR++ FD + A VTSV+GH
Sbjct: 62 QILCVAEKPSIARSVTEILSGNQFTTRQSPNRYTKNFDFHYRLPPSPQLADFTVTSVLGH 121
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ DF Y+ W+ +P LF AP+H+ + I R+L EAR L++W DCDRE
Sbjct: 122 LTCTDFDADYKGWHNCDPFSLFDAPIHRFVNPDHTGIERNLKAEARRADKLMIWTDCDRE 181
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GE+I E++ C + V RARFS++ I A N + + N+ AV AR E
Sbjct: 182 GEHIGSEIVSVCRAVKPGII---VLRARFSAIIPAQIHNACQNAGQLDMNQVYAVQARME 238
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G A TR QT Q ++ L IS
Sbjct: 239 LDLRIGAALTRCQTMGLQTRFHQLADSLIS 268
>gi|255943201|ref|XP_002562369.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587102|emb|CAP94766.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 628
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 8/210 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR----KASTEVHEFDGMFLGSHAY--IKVTSVVG 58
K+L VAEKP+IA ++AT LSGG T + +EFD F G+ + +TSVVG
Sbjct: 4 KILCVAEKPAIARAVATHLSGGSFQTHAIRGNQYVKNYEFDFNFGGAWGTCSVTMTSVVG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ W + P LF+APV + K+ I ++ +A+ L +W DCDR
Sbjct: 64 HLTGLDFDREYKGWMSCPPGALFEAPVQETVDKDKLPIADNIRNQAKYSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV + +A+ +V RA+FS+ + +A V + +A AV AR E
Sbjct: 124 EGEHIGSEVRNQA--KAGNAQIEVKRAKFSNTESAHVRRAALEPVNLDEYQASAVAARIE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTR QT Q L + IS
Sbjct: 182 LDLRIGAAFTRLQTLQLQTVVAALKEKVIS 211
>gi|225684061|gb|EEH22345.1| DNA topoisomerase III [Paracoccidioides brasiliensis Pb03]
Length = 710
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 114/212 (53%), Gaps = 17/212 (8%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLG--SHAYIKVTSVVG 58
K+L VAEKP+IA ++A LSGG L T V +EFD F + +TSV+G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ WN+ P LF APV K I ++ AR + +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPVQD-----KQKIAENIQTLARHSKAIFIWTDCDR 118
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q + + +V RARFS+ +L A N +E + +A AV AR
Sbjct: 119 EGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAAR 174
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 175 IELDLRIGAAFTRLQTLQLKSLGGVLEDRIIS 206
>gi|440475801|gb|ELQ44463.1| DNA topoisomerase 3 [Magnaporthe oryzae Y34]
gi|440487000|gb|ELQ66814.1| DNA topoisomerase 3 [Magnaporthe oryzae P131]
Length = 710
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 17/214 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAY----IKVTSVVGH 59
K+L VAEKPSI+ ++A LSGG+ T + + + + H + + +T V GH
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQFQTHNTRVQYIKNYSFTYDFGHPWGNCEVTMTCVTGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ + F P ++DWN P LF AP+H SN K I ++ +A+ L +W DCDRE
Sbjct: 63 LTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFIWTDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
GE+I E+ E +AR+ +V RARFS++ IL+A N V + + AV
Sbjct: 123 GEHIGGEIRE-------EARKGKPGIEVKRARFSNIERAHILQAARNPVNLDDMQVAAVA 175
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTRF T + G L +S
Sbjct: 176 ARIELDLRIGYAFTRFLTINLRSLNGPLKDLVLS 209
>gi|389632279|ref|XP_003713792.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
gi|351646125|gb|EHA53985.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
Length = 669
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 17/214 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAY----IKVTSVVGH 59
K+L VAEKPSI+ ++A LSGG+ T + + + + H + + +T V GH
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQFQTHNTRVQYIKNYSFTYDFGHPWGNCEVTMTCVTGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ + F P ++DWN P LF AP+H SN K I ++ +A+ L +W DCDRE
Sbjct: 63 LTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFIWTDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
GE+I E+ E +AR+ +V RARFS++ IL+A N V + + AV
Sbjct: 123 GEHIGGEIRE-------EARKGKPGIEVKRARFSNIERAHILQAARNPVNLDDMQVAAVA 175
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTRF T + G L +S
Sbjct: 176 ARIELDLRIGYAFTRFLTINLRSLNGPLKDLVLS 209
>gi|380486032|emb|CCF38971.1| DNA topoisomerase, partial [Colletotrichum higginsianum]
Length = 462
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 21/217 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAY------------I 51
+KVL VAEKPSI+ ++A L+G + EVH ++ ++ + +
Sbjct: 1 MKVLCVAEKPSISKAVAGHLAG-------RNPEVHNTRLQYIKNYGFDFDFGAPWGPCSV 53
Query: 52 KVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLV 111
+T+VVGH+ LDF P ++W+ P LF APV K + ++ ++AR C L+
Sbjct: 54 TMTAVVGHLTGLDFTPENKNWSHPPPESLFTAPVVTFVPQDKKTVAENIERQARYCQLLI 113
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
+W DCDREGE+I E++ + ++R V RA FS++ IL A L + ++ +
Sbjct: 114 IWTDCDREGEHIGKEIVNAA--RKGNSRIAVKRATFSNIERAHILTAARRLTDLDQKQVD 171
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AVDAR E+DL++G AFTRF T + G L R IS
Sbjct: 172 AVDARIELDLRIGYAFTRFLTNSLRPLGGPLQERTIS 208
>gi|343429570|emb|CBQ73143.1| related to DNA topoisomerase III alpha [Sporisorium reilianum SRZ2]
Length = 998
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGSHAYIKVT--SVVG 58
+++L VAEKPSIA SI+ +L+ G R + ++F G + +T SV G
Sbjct: 1 MRILCVAEKPSIAKSISAILARGHPSNRPGKDKFCRNYDFQYKMPGVQGMVDMTMTSVRG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF P ++ W + +P DLFQAP+ S+ I +L EAR +++W DCDR
Sbjct: 61 HLTNADFGPQHKGWFSCSPADLFQAPIITDLSDDAKAIGTNLRMEARNADAVMIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I E++ +V RR +V RARFS++ + I A N V+ + A AV++R
Sbjct: 121 EGEHIGSEIVT----EVRKVRRNIRVMRARFSAIIDSQIHAACQNTVDLDWRAADAVESR 176
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
++DL++G AFTR QT Q +
Sbjct: 177 IQLDLRIGAAFTRMQTLALQNR 198
>gi|426192057|gb|EKV41995.1| hypothetical protein AGABI2DRAFT_154568 [Agaricus bisporus var.
bisporus H97]
Length = 703
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSI+ SI+ +LSGG+ T S V ++ + +++ VT V GH+
Sbjct: 1 MRVLCVAEKPSISKSISQILSGGRYTTHNTQSPYVKNYEFEYPQTNSSFIVTCVSGHLLE 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGE 121
DF A++ W++ +P +LF AP+ +++ PK+ I ++L +AR L++W DCDREGE
Sbjct: 61 HDFTDAHRKWHSCSPGELFDAPI-ESKVGPKMKPIEQNLLAQARRVATLMIWTDCDREGE 119
Query: 122 NICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
+I E++ A R V RARFS++ + I +A VE + +A AV+AR +
Sbjct: 120 HIGTEIVSV----CRRANRNLVVKRARFSAIIAQQIHRAAQQPVELDLAQADAVEARILL 175
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTR QT Q + L + +S
Sbjct: 176 DLRIGAAFTRMQTLSLQTQVQQLAEKIVS 204
>gi|358391864|gb|EHK41268.1| hypothetical protein TRIATDRAFT_249816 [Trichoderma atroviride IMI
206040]
Length = 663
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 12/195 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++A LSGG T R + + FD G GS + + +T V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGGSFATHNTRNKYIKNYSFDFDFGQQWGSSS-VTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ ++F Y++W+ P LF AP+ K N K I +++ +A+ LV+W DCD
Sbjct: 60 GHLTNVEFTNEYKNWSHPPPESLFTAPIVK---NDKKDIAKNIADQAKYARLLVIWTDCD 116
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+++ +V +A +V RARFS+V +L A L+E + + AV AR
Sbjct: 117 REGEHIGQEIVDAA--KVGNAAIQVKRARFSNVERAHVLTAARRLIELDEKQVNAVSARI 174
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTRF T
Sbjct: 175 ELDLRIGYAFTRFIT 189
>gi|409045159|gb|EKM54640.1| hypothetical protein PHACADRAFT_97897 [Phanerochaete carnosa
HHB-10118-sp]
Length = 705
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 106/193 (54%), Gaps = 15/193 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSIA SI +LSGG+ TR + + + +D + +++ VTSV GH+
Sbjct: 1 MRVLCVAEKPSIARSITQILSGGQFNTRPSPNKYIRNYDFDYPQTNSQFTVTSVTGHLLD 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF AY +W + P LF AP+ I R+L EAR L++W DCDREGEN
Sbjct: 61 HDFDSAYSNWQSCEPFVLFDAPIISRIKKGSETIARNLENEARRAQTLMIWTDCDREGEN 120
Query: 123 ICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
I G +V RK V RARFS++ + I A + V + ++ AV+AR
Sbjct: 121 I--------GAEVAGVCRKVKTAIIVRRARFSAIIAQQIHNAAQHPVNLDMAQSNAVEAR 172
Query: 177 QEIDLKVGVAFTR 189
+DL++G FTR
Sbjct: 173 TLLDLRIGATFTR 185
>gi|225560799|gb|EEH09080.1| DNA topoisomerase III [Ajellomyces capsulatus G186AR]
Length = 630
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEV----HEFDGMFLGSHAYIKV--TSVVG 58
K+L VAEKP+IA +A LSGG V +EFD F V TSV+G
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQCSVIMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F Y+ WN+ P LF APV + + + I ++ AR L +W DCDR
Sbjct: 64 HLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKNNLTIAENIRTLARNSKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQV--NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I EV +Q ++ R ++ RARFS+ IL+A N ++ + ++A AV AR
Sbjct: 124 EGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIDLDDSQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT + G L+ R IS
Sbjct: 180 IELDLRIGAAFTRLQTLQLKSLGGVLEDRVIS 211
>gi|340505685|gb|EGR31996.1| hypothetical protein IMG5_098220 [Ichthyophthirius multifiliis]
Length = 482
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 9/203 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGK---LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
++ VAEKPS+A + +LS G+ + + +++F+ + TSV GH+ +
Sbjct: 7 IINVAEKPSVAKEVTKILSKGRHSNIQSESKFNPIYKFNYQLYQQPVNMLFTSVTGHIIQ 66
Query: 63 LDFPPAYQDWNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
F +++W NP L + + + K I +L +R L+LWLDCDREG
Sbjct: 67 TKFDDKFKNWTQVNPQILLDPNTEILRFIAEDKKKIEENLKIISRDADTLILWLDCDREG 126
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
E I +EVI+ C N ++ RA+FSS+ ++I +A+ NL EP + AV AR EI
Sbjct: 127 EAIAYEVIDICQSINRN---LQIKRAQFSSLDYQNINRAINNLREPKKELNDAVQARIEI 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNL 202
DL++G AFTRFQT Q K+ +L
Sbjct: 184 DLRIGAAFTRFQTINLQNKFQSL 206
>gi|70989103|ref|XP_749401.1| DNA topoisomerase III [Aspergillus fumigatus Af293]
gi|66847032|gb|EAL87363.1| DNA topoisomerase III, putative [Aspergillus fumigatus Af293]
gi|159128816|gb|EDP53930.1| DNA topoisomerase III, putative [Aspergillus fumigatus A1163]
Length = 629
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 8/210 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT------RKASTEVHEFDGMFLGSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG + T + + EF+ + +TSV+G
Sbjct: 5 RILCVAEKPAIAKAVAQHLSGGSMQTISIHGNKYVKNYLFEFNFGDPWGTCSVTMTSVLG 64
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF Y+ W + P LF+APV + I ++ ++AR L +W DCDR
Sbjct: 65 HLMALDFESQYKSWLSCPPGALFEAPVREFVEEDNKPIAENIKEQARMSKALFIWTDCDR 124
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV + + + R V RARFS+ +L+A L + + N+A AV AR E
Sbjct: 125 EGEHIGTEVRKKA--KEGNQRILVKRARFSNTERAHVLRAARALTDVDENQANAVAARIE 182
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTR Q+ Q +L ++ IS
Sbjct: 183 LDLRIGAAFTRLQSLQLQRMCADLSNKLIS 212
>gi|443926203|gb|ELU44921.1| DNA topoisomerase type I [Rhizoctonia solani AG-1 IA]
Length = 3005
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 112/207 (54%), Gaps = 15/207 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE-FDGMFLGSHAYIKVTSVVGHVFR 62
+KVL VAEKPSIA S+ R + H+ +D + + +T+V GH+
Sbjct: 2073 MKVLCVAEKPSIAKSV-----------RPTQSPYHKNYDFYYAKTGDNYTMTAVSGHLTE 2121
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF A + WN+ +P LF AP+ S I R+L EARG L++W DCDREGEN
Sbjct: 2122 KDFGSALRSWNSCDPFQLFDAPIETRVSKDGERIERNLLSEARGAQMLMIWTDCDREGEN 2181
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSS-VTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I EV E + N R +V RARFS+ + + I A N V+ +R +A AV+AR +DL
Sbjct: 2182 IGAEV-EAVCLRSN-PRIRVKRARFSAIIPARQIHHAAQNPVDLDRAQADAVEARILLDL 2239
Query: 182 KVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+ G AFTR QT Q ++ L IS
Sbjct: 2240 RYGAAFTRMQTLTLQPRFPQLQEGLIS 2266
>gi|409075215|gb|EKM75598.1| hypothetical protein AGABI1DRAFT_46203 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 852
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPSI+ SI+ +LSGG+ T S V ++ + +++ VT V GH+
Sbjct: 1 MRVLCVAEKPSISKSISQILSGGRYTTHNTQSPYVKNYEFEYPQTNSSFIVTCVSGHLLE 60
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGE 121
DF A++ W++ +P +LF AP+ +++ PK+ I ++L +AR L++W DCDREGE
Sbjct: 61 HDFTDAHRKWHSCSPGELFDAPI-ESKVGPKMKPIEQNLLAQARRVATLMIWTDCDREGE 119
Query: 122 NICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
+I E++ A R V RARFS++ + I +A VE + +A AV+AR +
Sbjct: 120 HIGTEIVSV----CRRANRNLVVKRARFSAIIAQQIHRAAQQPVELDLAQADAVEARILL 175
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTR QT Q + L + +S
Sbjct: 176 DLRIGAAFTRMQTLSLQTQVQQLAEKIVS 204
>gi|387592248|gb|EIJ87272.1| hypothetical protein NEQG_02607 [Nematocida parisii ERTm3]
gi|387597411|gb|EIJ95031.1| hypothetical protein NEPG_00556 [Nematocida parisii ERTm1]
Length = 853
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 15/222 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+++L VAEKPS+A S+A +LS G+ K + V F+ G + TSV+GH+
Sbjct: 1 MRILNVAEKPSVAKSLADILSNGRAQFSKGYNKYCSVFRFNHCIEGIPCEMVFTSVLGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+ L+F W +P++LF+ + + R L ++ C L++W DCDREG
Sbjct: 61 YSLEFAKK-TSWTEIDPIELFEEDIRWIIPKEMADVSRTLVHLSKDCDMLIIWTDCDREG 119
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI +V V D R+V RARFS +++ D++ A+ NL N E+ AV++R EID
Sbjct: 120 ENIGMQVANL----VRDRIREVKRARFSGLSKYDVMHAVENLCRLNAYESKAVESRIEID 175
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFI----SLVFSSLFLIC 218
L++G A TR QT Q LDS+ + S +L +C
Sbjct: 176 LRIGAALTRLQTLQLQNI---LDSKSVISYGSCQIPTLGFVC 214
>gi|400597476|gb|EJP65209.1| DNA topoisomerase [Beauveria bassiana ARSEF 2860]
Length = 667
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 10/222 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMFLGSHAY--IKVTSVVG 58
++VL VAEKPSI+ ++A+ LSGG+ T R + + FD F + + +T V G
Sbjct: 1 MRVLCVAEKPSISKAVASHLSGGQFQTHNTRNQYVKNYAFDFNFGPPYGQCSVTMTCVSG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F +++W+ P LF APV K +I ++L +AR LV+W DCDR
Sbjct: 61 HLTNLEFTAEHKNWSFPPPESLFNAPVISNVYQDKKNIAQNLADQARYARLLVIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I E+++ + +A+ +V RARFS++ +L A L++ + + AV AR E
Sbjct: 121 EGEHIGQEIVDAA--KKGNAQLQVKRARFSNIERAHVLSAAMRLIDLDVRQVNAVAARIE 178
Query: 179 IDLKVGVAFTRFQTTYFQ---GKYGNLDSRFISLVFSSLFLI 217
+DL++G AFTRF T + G NL + S F +L +
Sbjct: 179 LDLRIGYAFTRFMTNNLRPLGGPMENLTLSYGSCQFPTLGFV 220
>gi|340520630|gb|EGR50866.1| DNA topoisomerase [Trichoderma reesei QM6a]
Length = 663
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++A LSGG T R + + FD G GS + + +T+V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGGSFTTHNTRNKYIKNYSFDFDFGQQWGSSS-VTMTAVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ ++F Y++W+ P LF AP+ + K I +++ +A+ LV+W DCD
Sbjct: 60 GHLTNVEFTSEYKNWSHPPPESLFAAPIVTNVHDDKKDIAKNIADQAKYARLLVIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+++ + +A +V RARFS+V +L A LVE + + AV AR
Sbjct: 120 REGEHIGQEIVDAA--KKGNASIQVKRARFSNVERAHVLSAARRLVELDEKQVNAVAARI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTRF T + G L +S
Sbjct: 178 ELDLRIGYAFTRFLTNNLKQLGGPLADLVLS 208
>gi|407924030|gb|EKG17090.1| DNA topoisomerase type IA [Macrophomina phaseolina MS6]
Length = 671
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 110/194 (56%), Gaps = 8/194 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRK--ASTEVHEFDGMFLGSHAY----IKVTSVVG 58
K+L VAEKPSIA ++A LSG ++ TR+ + + + + H + + T+V G
Sbjct: 3 KILCVAEKPSIAKAVAEHLSGRQMDTRRVRGTQFISNYSFTYNFGHRWGNCSVVFTAVAG 62
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DF Y+ WN+ P +LF+AP+ ++ K I +++ AR C L +W DCDR
Sbjct: 63 HLTSQDFASQYRYWNSCRPQELFEAPIQTFVADDKKGIAQNIQALARDCDGLFIWTDCDR 122
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I E+ E D +V RARFS++ ++ A N V+ + A AV AR E
Sbjct: 123 EGEHIGTEIREWARKGKRDI--EVKRARFSNIERAHVINAARNPVDIDERAANAVAARIE 180
Query: 179 IDLKVGVAFTRFQT 192
+DL++G AFTR QT
Sbjct: 181 LDLRIGAAFTRMQT 194
>gi|294892870|ref|XP_002774271.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239879497|gb|EER06087.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 956
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQD-WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLV 111
VT+V GH+ LDF Y+ W+ +P L+ AP+ K+ ++ + +L + AR C LV
Sbjct: 282 VTAVRGHLMGLDFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRRLARTCDWLV 341
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
LWLDCDREGE I +EVIE + +AR V+RA FS++T D+ +A NL PN + A
Sbjct: 342 LWLDCDREGEAIAYEVIEIA--REANARLNVYRANFSALTHADLTRACLNLARPNPHLAA 399
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
AVDARQEIDL++G +FTRF T ++ +
Sbjct: 400 AVDARQEIDLRIGASFTRFLTLRYKRR 426
>gi|294659706|ref|XP_002770630.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
gi|199434172|emb|CAR65964.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
Length = 624
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 10/199 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLG-SHAYIKVTSVVGH 59
+K+L VAEKPSI+ +++ VLSGG + TR + + ++F F G + +T+V+GH
Sbjct: 1 MKILCVAEKPSISKAVSQVLSGGNVRTRNSKNKYIKNYDFKFDFPGYGLVDVTMTAVMGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFP + W NP LF+AP+ SN V+ +++ EAR L++W DCDRE
Sbjct: 61 ITNMDFPNTFS-WGKCNPGRLFEAPLIDVISNKDVY--NNISSEARSATKLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GE I E+ ++ N + + + R++FS + +L+A N ++ + N AV R
Sbjct: 118 GEFIGHEIF-LAAYKGNSSIKVEDIWRSQFSHLERSHVLQAAKNPIKLDMNSVYAVSCRM 176
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL+VG +FTRF T F+
Sbjct: 177 EIDLRVGASFTRFLTELFR 195
>gi|340959518|gb|EGS20699.1| DNA topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 625
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLY---TRKASTEVHEFDGMF--LGSHAYIKVTSVVGH 59
+VL VAEKPSIA ++AT LSGG+ TR A + + FD F + +T+V GH
Sbjct: 3 RVLCVAEKPSIAKAVATHLSGGRYQSASTRDAHIKNYSFDFDFGPPWGRCSVTMTAVKGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ L+FP Y W P LF APV+ +I +++ AR L++W DCDRE
Sbjct: 63 LTTLEFPSDYNRWEYPPPERLFDAPVYTVIPKDNKNIAKNIEDLARSSNLLIIWTDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
GE+I G ++ DA +K V RARFS+V IL+A LV + + AV
Sbjct: 123 GEHI--------GSEIRDAAKKGNRYIEVKRARFSNVERAHILQAARRLVCLDERQVDAV 174
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+DL++G AFTRF T + G + IS
Sbjct: 175 AARIELDLRIGYAFTRFLTLNLRTLGGPMSQLTIS 209
>gi|388581731|gb|EIM22038.1| prokaryotic type I DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 797
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFD-----GMFLGSHAYIKVTSVV 57
+K L VAEKPSI+ SI +LS G +R S++ + +D + G VT+V
Sbjct: 3 IKYLCVAEKPSISKSITQILSSGSYNSRNTSSKFIKNYDFNYKMTGYNGRQVSFTVTAVA 62
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF Y+ W++ +PL LF V + + I ++L EAR HL++W DCD
Sbjct: 63 GHLTASDFGKDYRKWHSCDPLQLFDGRVEVSTAGNMSAIEQNLKNEARSSSHLMIWTDCD 122
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E++ + + R +V RA+FS++ I A + E + + AV+AR
Sbjct: 123 REGEHIGAEIMSIC--RKANPRIEVSRAKFSAIIPNQIHNAARHPAELDMKQVRAVEARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLI 217
E+DL++G AFTR T + LD F +L +
Sbjct: 181 ELDLRIGAAFTRLMTMNLSKQIAELDVHTGPCQFPTLGFV 220
>gi|430813900|emb|CCJ28786.1| unnamed protein product [Pneumocystis jirovecii]
Length = 597
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 13/202 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA------STEVHEFDGMFLGSHAYIKVTSVV 57
+K+L VAEKPSIA +I+ +L GG ++TRK + ++H F F + + TSV
Sbjct: 15 MKILCVAEKPSIAKTISNILGGGNVHTRKTKDIYNKNYDIH-FKFNFNWGDSSVTFTSVR 73
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +F ++ WN NPL LF+A + + I +L +E++ L +W DCD
Sbjct: 74 GHLLEWEFEETFRKWNTCNPLSLFEAKIITTINKEMKSIHENLLKESKYAEGLYIWTDCD 133
Query: 118 REGENICFEVIECTGFQVNDARRKVH--RARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
REGE I E++ V +A K+ RA F+++ + ILKA ++ + AV A
Sbjct: 134 REGEYIAAEIVNI----VREANPKIEIKRAHFNNLEKTHILKAAHQPFNIDQKQVNAVAA 189
Query: 176 RQEIDLKVGVAFTRFQTTYFQG 197
R E DL++G AFTRFQT Q
Sbjct: 190 RIEFDLRIGSAFTRFQTLSLQN 211
>gi|402086932|gb|EJT81830.1| DNA topoisomerase III [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 671
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 118/215 (54%), Gaps = 19/215 (8%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVVG 58
K+L VAEKPSI+ ++A LSGG+ T R + + F+ G GS + +T V+G
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQFQTHNTRVTYVKNYSFNFDFGPPWGS-CEVTMTCVLG 61
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ ++F P ++DW P LF APV + K I +++ ++A+ L +W DCDR
Sbjct: 62 HLTGMEFGPEFKDWRYPPPESLFTAPVSTKTAEDKKEIAQNIQRQAQYARALFIWTDCDR 121
Query: 119 EGENICFEVIECTGFQVNDARR-----KVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
EGE+I E++E +AR+ +V RARFS++ IL A NL + + AV
Sbjct: 122 EGEHIGSEIVE-------EARKTKPGIQVKRARFSNIERAHILHAAKNLANLDDRQVQAV 174
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AR E+D+++G AFTRF T + G L +S
Sbjct: 175 QARIELDIRIGFAFTRFLTNNLRTLGGPLAEHMLS 209
>gi|268572957|ref|XP_002641457.1| C. briggsae CBR-TOP-3 protein [Caenorhabditis briggsae]
Length = 753
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 5/201 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+ L VAEK +A +A +LS G ++ ++ ++ + G A I VTSV GH+
Sbjct: 3 RALFVAEKNDVAKGVAAILSNGTSNRKEGKSKFNKIYTLNSELFGQRAAISVTSVSGHLM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
F +W ++ ++LF+APV + I + L +EA+ LV+W DCDREGE
Sbjct: 63 NWQFHENMSNWQTTSMVELFEAPVRHVVTPDMKLIEKTLREEAQRHDVLVVWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+++ + ++ R ++RARFS +T+ I +A NL+ + AVD R E+DL
Sbjct: 123 AIGAEIVKVC--RESNRRIDIYRARFSEITKAAITRAARNLIRLDEKIVAAVDCRSELDL 180
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G AFTR QT + + ++ +L
Sbjct: 181 RIGSAFTRLQTLHLRNRFSSL 201
>gi|440636754|gb|ELR06673.1| hypothetical protein GMDG_00290 [Geomyces destructans 20631-21]
Length = 659
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLGSHAY--IKVT 54
M P +L VAEKPSIA ++A L GG TR + T+ ++F F + +T
Sbjct: 1 MGPT-ILCVAEKPSIAKAVAGHLGGGSFATRNVTGAQYTKNYDFTFNFGPPWGACNVTMT 59
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV+GH+ +DF P ++DW P LF VH N K I R++ +AR L +W
Sbjct: 60 SVLGHLTEVDFGPEFKDWRYPPPRKLFDGRVHVKVHNDKAAIARNIETQARNARILFIWT 119
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DCDREGE+I EV E ++ +V RA+FS++ ++ A + ++ + + AV
Sbjct: 120 DCDREGEHIGNEVREQA--VKGNSSIEVKRAKFSNIERVHVINAAKHPIDLDSRQVDAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R E+DL++G AFTRFQT Q G L IS
Sbjct: 178 TRIELDLRIGFAFTRFQTLSLQSLGGPLGGAKIS 211
>gi|324519767|gb|ADY47473.1| DNA topoisomerase 3 [Ascaris suum]
Length = 200
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 8/201 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLG-SHAYIKVTSVVGH 59
++ L VAEK A SIA +LS G + +R ++++F+ L S+ + VTSV GH
Sbjct: 2 MRALFVAEKNDAAKSIAAILSRGASARRDSRSKYNKIYQFNASLLNESNCAVAVTSVAGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ + FP AY+ W + LF APV K I L +E R LV+W DCDRE
Sbjct: 62 LLQHRFPDAYKSWTETPMASLFSAPVLKGVIVGMEPIRETLIEETRLSDVLVIWTDCDRE 121
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GE I EV C + N V+RARFS +T I A+ NL +R AV+ R E
Sbjct: 122 GEGIGAEVASVCLSVKPN---MPVYRARFSEITASAIWHAVNNLGRLDRRVVDAVECRSE 178
Query: 179 IDLKVGVAFTRFQTTYFQGKY 199
+DL++G AFTR QT + + Y
Sbjct: 179 LDLRIGAAFTRLQTLHLRSFY 199
>gi|403373519|gb|EJY86679.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1033
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
VTSV GH+ FP +DW + +L++ + K S + I ++L++ A+ L+L
Sbjct: 6 VTSVCGHIIEYKFPQKCKDWAKTPYKELYKCKLEKQPSVQNLDIVKNLHEYAKNADMLIL 65
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGN-LVEPNRNEAL 171
WLDCDREGE I FEVIE D ++ RA FS++T++DI +A+ L EPN+N+A
Sbjct: 66 WLDCDREGEAIAFEVIEIVREIKPDI--EIKRAHFSALTKQDIFRAITTRLTEPNKNQAD 123
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AV ARQEIDL++G +FTR Q+ F+ G + +S
Sbjct: 124 AVFARQEIDLRIGASFTRLQSMKFKDVIGANQKQVLS 160
>gi|448115381|ref|XP_004202802.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359383670|emb|CCE79586.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLG-SHAYIKVTSVVGH 59
+K+L VAEKPSI+ +++ +LSGGK R + + ++F F G + +TSV+GH
Sbjct: 1 MKILCVAEKPSISKAVSHILSGGKTKVRNSRNKYVKNYDFKFDFPGVGLCDVTMTSVMGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFP + W NP LF AP SN +V+ +++ EAR C L++W DCDRE
Sbjct: 61 ITNIDFPTQFS-WGRCNPGRLFDAPTIDNVSNKEVY--ENISNEARRCNRLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GE I E+ + N + R + R++FS + IL+A N + + N AV R
Sbjct: 118 GEFIGHEIFSA-AVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVHAVRCRM 176
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL+VG +FTRF T ++
Sbjct: 177 EIDLRVGASFTRFLTDLYR 195
>gi|45200996|ref|NP_986566.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|44985766|gb|AAS54390.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|374109812|gb|AEY98717.1| FAGL101Cp [Ashbya gossypii FDAG1]
Length = 631
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 109/204 (53%), Gaps = 14/204 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-------VHEFDGMFLGSHAYIKVTSV 56
++V+ VAEK SIA ++A +L GG TR + ++ + F G + +T+V
Sbjct: 1 MRVVCVAEKNSIAKAVAGILGGGNTRTRSSPSKYIKNYDFTYNFAWAQGGERCEVTMTAV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ DF P Y WN +P +LF A + + P I ++ +E RG +L++W DC
Sbjct: 61 AGHLMSQDFGPQY-GWNKCDPRELFGAEILE---TPTREIAENITRECRGAEYLMIWTDC 116
Query: 117 DREGENICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DREGE I +E+ Q N R ++HRA FS + + I++A + + + N AV
Sbjct: 117 DREGEAIGWEIAR-VAMQANTRLVRSRIHRAVFSHLGREHIMRAANSPSQIDMNAVDAVK 175
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR EIDL+ G AFTR T + K
Sbjct: 176 ARSEIDLRAGYAFTRLLTATLRAK 199
>gi|300120095|emb|CBK19649.2| unnamed protein product [Blastocystis hominis]
Length = 770
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 5/131 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+++L +AEKPS+A ++ +LS G+L RK ++ ++EF L + +S+ GH+
Sbjct: 1 MRILNIAEKPSVAREVSNILSQGQLRARKGESQYNPIYEFRCHVLSQSDEMVFSSMTGHM 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDRE 119
LDFP YQ W A +P LFQAPV K+ NPK+ I + + E R C L LWLDCDRE
Sbjct: 61 MELDFPDTYQSWRAVDPASLFQAPVFKS-VNPKMKAIYKQIQNEGRKCQALCLWLDCDRE 119
Query: 120 GENICFEVIEC 130
GENI FEVI+C
Sbjct: 120 GENIAFEVIDC 130
>gi|402593065|gb|EJW86992.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 795
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 8/204 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDG-MFLGSHAYIKVTSVVGH 59
++ L VAEK A SIA +LS G R + ++++F + Y+ +TSV GH
Sbjct: 22 MRALFVAEKNDAAKSIAAILSRGTSTRRDGRSRFNKIYQFTANVGQNPGCYVAMTSVSGH 81
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ + DFP ++++W + LF V K+ I L +E R LV+W DCDRE
Sbjct: 82 LLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDIRATLIEEIRKSDLLVIWTDCDRE 141
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GE I EV+ CT QVN V+RARFS +T + +A+ NLV ++ AV+ R E
Sbjct: 142 GEAIGAEVVSVCT--QVN-CNLDVYRARFSEITNAAVNRALNNLVRLDQRLVDAVECRSE 198
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNL 202
+DL++G AFTR QT + + +GN+
Sbjct: 199 LDLRIGAAFTRLQTLHLRNNFGNI 222
>gi|347839519|emb|CCD54091.1| similar to DNA topoisomerase III [Botryotinia fuckeliana]
Length = 665
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLY---TRKASTEVHEFDGMFLGSHAYIK--VTSVVGH 59
K+L VAEKPSIA ++A L+GG TR + + F F G +TSV GH
Sbjct: 4 KILCVAEKPSIAKAVANHLAGGSAQATNTRNKYIKNYSFTFDFGGQWGNCNAVMTSVSGH 63
Query: 60 VFRLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+ LD P ++ W P +LF +A V ++ S K I +++ +AR L +W DCDR
Sbjct: 64 LTSLDVAPTHKGWTDPPPQELFFKARVIESVSEDKKDIAQNIEAQARDAKALFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV + N R ++ RARFS++ +++A N V ++ + AV AR E
Sbjct: 124 EGEHIGGEV-RAQALKGN-PRIEIKRARFSNIERAHVIQAAKNPVNLDQRQVDAVAARIE 181
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTRFQTT Q G L + +S
Sbjct: 182 LDLRIGYAFTRFQTTNLQKLGGPLAKKMLS 211
>gi|302916113|ref|XP_003051867.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732806|gb|EEU46154.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 653
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++A +LSGG T R + + FD G G + + +T V
Sbjct: 1 MRVLCVAEKPSISKAVAGILSGGSHTTHNTRNKFIKNYSFDFDFGQRWGKCS-VTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +DF P Y++W+ P LF AP+ ++ K I +++ +A+ LV+W DCD
Sbjct: 60 GHLTNVDFSPEYKNWSHPPPEALFNAPIVTSD---KKSIAQNIESQAKFARLLVIWTDCD 116
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E++E D +V RARFS+V +L A +L E + + AV R
Sbjct: 117 REGEHIGHEIVEAARKGKPDI--EVKRARFSNVERAHVLSAARSLAELDEKQVNAVATRI 174
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTRF T + G ++ +S
Sbjct: 175 ELDLRIGYAFTRFITNNLRPLGGPMEKLTLS 205
>gi|429861174|gb|ELA35874.1| DNA topoisomerase [Colletotrichum gloeosporioides Nara gc5]
Length = 673
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAY------------I 51
+KVL VAEKPSI+ ++A L+G + VH ++ ++ + +
Sbjct: 1 MKVLCVAEKPSISKAVAGHLAG-------QNPTVHNTRSTYIKNYGFNFNFGPPWNACDV 53
Query: 52 KVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLV 111
+T+V+GH+ LDF PA + W P LF APV + K + ++ ++AR C LV
Sbjct: 54 TMTAVLGHLTALDFTPANKSWQHPPPESLFTAPVVTLVPDDKKTVADNIERQARYCQLLV 113
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
+W DCDREGE+I E++ D +V RA FS++ IL A L + ++ +
Sbjct: 114 IWTDCDREGEHIGKEIVHAARKGKPDI--QVKRATFSNIERAHILSAARRLTDLDQKQVD 171
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AVD R E+DL++G AFTRF T + G L + IS
Sbjct: 172 AVDTRIELDLRIGYAFTRFLTLSLRPLGGALQEKTIS 208
>gi|448112756|ref|XP_004202179.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359465168|emb|CCE88873.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLG-SHAYIKVTSVVGH 59
+K+L VAEKPSI+ +++ +LSGGK R + + ++F F G + +TSV+GH
Sbjct: 1 MKILCVAEKPSISKAVSHILSGGKTKVRNSRNKYVKNYDFKFDFPGVGLCDVTMTSVMGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFP + W NP LF AP SN +V +++ EAR C L++W DCDRE
Sbjct: 61 ITNIDFPTQFS-WGKCNPGRLFDAPTIDNVSNKEVF--ENISTEARRCNRLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GE I E+ + N + R + R++FS + IL+A N + + N AV R
Sbjct: 118 GEFIGHEIFSA-AVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVHAVRCRM 176
Query: 178 EIDLKVGVAFTRFQTTYFQ 196
EIDL+VG +FTRF T ++
Sbjct: 177 EIDLRVGASFTRFLTDLYR 195
>gi|328860051|gb|EGG09158.1| hypothetical protein MELLADRAFT_34533 [Melampsora larici-populina
98AG31]
Length = 749
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 7/205 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL----GSHAYIKVTSVVGH 59
+VL VAEKPSIA +I +LS + TR++ + V FD + VTSV+GH
Sbjct: 1 QVLCVAEKPSIARAITEILSSNQFQTRQSPNKYVKNFDFTYRLPPSTQQISFTVTSVLGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ + DF ++ W+ +P LF AP+ + + I R+L EARG L++W DCDRE
Sbjct: 61 LTQSDFDAHHKKWSNCDPFALFDAPIERFVTPEHKGIERNLQAEARGSDRLMIWTDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE+I E I+ + N V RARFS++ I A E + +A AV+ R E+
Sbjct: 121 GEHIGSE-IKSVCLKAN-RNLTVSRARFSAIIPAQIHNACRTAGELDMKQANAVETRMEL 178
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDS 204
DL++G A TR QT Q ++ +++
Sbjct: 179 DLRIGAALTRQQTLGLQPRFPQIET 203
>gi|308483746|ref|XP_003104074.1| CRE-TOP-3 protein [Caenorhabditis remanei]
gi|308258382|gb|EFP02335.1| CRE-TOP-3 protein [Caenorhabditis remanei]
Length = 780
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHVF 61
K L VAEK +A +A++LS G ++ + +++ + G + VTSV GH+
Sbjct: 3 KALFVAEKNDVAKGVASILSNGTSNRKEGRSIFNKIYTLNTELFGQRTAVSVTSVSGHMM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
F +W ++ ++LF+APV I + L +EA+ LV+W DCDREGE
Sbjct: 63 NFQFHENMSNWQTTSMVELFEAPVRHVVMPDMKLIEQTLREEAQRHDLLVVWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+++ + ++ R + RARFS +T+ I +A NL+ + AVD R E+DL
Sbjct: 123 AIGAEIVKVC--RESNRRIDIFRARFSEITKTAITRAAQNLIRLDERTVAAVDCRSELDL 180
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G AFTR QT + + ++ +L
Sbjct: 181 RIGSAFTRLQTLHLRNRFRDL 201
>gi|321258468|ref|XP_003193955.1| DNA topoisomerase type I [Cryptococcus gattii WM276]
gi|317460425|gb|ADV22168.1| DNA topoisomerase type I, putative [Cryptococcus gattii WM276]
Length = 923
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL-------GSHAYIKVTS 55
++VL VAEKPSIA SI +LSGG+ TR + + +D ++ G A VT+
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGRWDTRNGRNQYIRNYDFLYNLAPPLGNGRGANFTVTA 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF ++ W + +P LF APV + +L EAR L++W D
Sbjct: 61 VLGHLTSSDFDEDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADILMIWTD 120
Query: 116 CDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CDREGE+I EV+ C N V RARFS++ I +A + + +A AV
Sbjct: 121 CDREGEHIGSEVVAACKKVNRNIL---VKRARFSAIIPAQIHQACRQANDLDMRQADAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R +DLK+G AFTR T QG+ +L + IS
Sbjct: 178 TRISLDLKIGSAFTRLTTMTLQGRVPDLAEQLIS 211
>gi|310791677|gb|EFQ27204.1| DNA topoisomerase [Glomerella graminicola M1.001]
Length = 664
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 21/217 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAY------------I 51
+KVL VAEKPSI+ ++A L+G + EVH ++ ++ + +
Sbjct: 1 MKVLCVAEKPSISKAVAGHLAG-------RNPEVHNTRSQYIKNYGFDFDFGAPWGSCSV 53
Query: 52 KVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLV 111
+T+V+GH+ L+F ++W+ P LF APV K + ++ ++AR C L+
Sbjct: 54 TMTAVLGHLTGLEFTDENKNWSHPPPESLFTAPVVTVVPQDKKTVAENIERQARYCQLLI 113
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
+W DCDREGE+I E++ + + R V RA FS++ IL A L + ++ +
Sbjct: 114 IWTDCDREGEHIGKEIVNAA--KKGNNRIAVKRATFSNIERAHILTAARRLTDLDQKQVD 171
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AVDAR E+DL++G AFTRF T + G L R IS
Sbjct: 172 AVDARIELDLRIGYAFTRFLTISLRPLGGPLQERTIS 208
>gi|126649179|ref|XP_001388262.1| DNA topoisomerase III [Cryptosporidium parvum Iowa II]
gi|126117184|gb|EAZ51284.1| DNA topoisomerase III, putative [Cryptosporidium parvum Iowa II]
Length = 814
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 78/198 (39%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Query: 6 VLMVAEKPSIALSIATVL-----SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
+L VAEK S+A IA +L S KL ++ + F F G + VTSV GH+
Sbjct: 47 ILCVAEKNSVAKEIANILCPEFQSPNKLKSKSKTNVALYFPYEFCGDECNMIVTSVRGHL 106
Query: 61 FRLDFPPAYQDWNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+L F Y DW + NP+ L PV + + I +L ++ +L+LWLDCDR
Sbjct: 107 KQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYFSKISSYLILWLDCDR 166
Query: 119 EGENICFEVIECTGFQVNDARRKV-HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FEV+ +N + + RA FS++T+ +I AM L PNR + AV+AR+
Sbjct: 167 EGENIAFEVLSIC---LNSNKNLITFRAHFSAITKFEINNAMKKLSFPNRALSDAVEARK 223
Query: 178 EIDLKVGVAFTRFQTTYF 195
EIDL+VG +FTRF T +
Sbjct: 224 EIDLRVGSSFTRFLTLRY 241
>gi|303310917|ref|XP_003065470.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105132|gb|EER23325.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 618
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 10/220 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEVHEFDGMFL----GSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG L T + + V ++ F ++ + +TSV+G
Sbjct: 4 RILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSFGPPWGNSSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF ++ W + P LF APV K+ I ++ +AR L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 119 EGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE+I EV + G + R +V RA+FS+ +L+A N + + + AV AR
Sbjct: 124 EGEHIGSEVRTQAVG---ANPRIEVKRAKFSNTERAHVLRAARNPIALDERQINAVAARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLI 217
E+DL++G AFTR T G L R IS + F +
Sbjct: 181 ELDLRIGAAFTRLLTLQLGALGGALSERLISYGKKTYFRV 220
>gi|449304688|gb|EMD00695.1| hypothetical protein BAUCODRAFT_60941 [Baudoinia compniacensis UAMH
10762]
Length = 675
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 11/215 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLGSHA-YIKVTSVVGH 59
KVL VAEKPSIA ++A LSGG++ +R + +EF A + +TSV+GH
Sbjct: 4 KVLCVAEKPSIARAVANHLSGGQINSRNVQGNQYVKNYEFHCNLAAWGACSVTMTSVLGH 63
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ DF Y+ WN+ P LF+A + + K + ++ ++AR +L +W DCDRE
Sbjct: 64 LLSHDFEDRYRKWNSCEPSALFEARIETYVEDDKKAVAGNIERQARYAQYLYIWTDCDRE 123
Query: 120 GENICFEV--IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GE+I E+ + G Q K RARFS+V IL A N V + +A AV +R
Sbjct: 124 GEHIGTEIRQVATHGNQALRQPGKTVRARFSNVERAHILNAASNPVALDEAQANAVMSRI 183
Query: 178 EIDLKVGVAFTRFQT----TYFQGKYGNLDSRFIS 208
E+DL++G FTR T QG++G + + IS
Sbjct: 184 ELDLRIGATFTRNLTLSIQPMLQGRFGAEERQVIS 218
>gi|17555378|ref|NP_499558.1| Protein TOP-3 [Caenorhabditis elegans]
gi|6686028|sp|O61660.1|TOP3_CAEEL RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|3047013|gb|AAC13567.1| DNA topoisomerase III [Caenorhabditis elegans]
gi|14530655|emb|CAB60518.2| Protein TOP-3 [Caenorhabditis elegans]
Length = 759
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+ L VAEK +A +A +LS G R+ ++ ++ + G I VTSV GH+
Sbjct: 3 RALFVAEKNDVAKGVAAILSNGTANRREGRSKFNKIYTLNTELFGQQTAISVTSVSGHMM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
F +W ++ ++LF+APV + I + L ++A+ LV+W DCDREGE
Sbjct: 63 NFQFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+++ + ++ R + RARFS +T+ I +A NL+ + AVD R E+DL
Sbjct: 123 AIGAEIVKVC--RDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDL 180
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G AFTR QT + + ++ +L
Sbjct: 181 RIGSAFTRLQTLHLRNRFRDL 201
>gi|67624339|ref|XP_668452.1| DNA topoisomerase III [Cryptosporidium hominis TU502]
gi|54659676|gb|EAL38243.1| DNA topoisomerase III [Cryptosporidium hominis]
Length = 498
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 11/195 (5%)
Query: 6 VLMVAEKPSIALSIATVL-----SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
+L VAEK S+A IA +L S +L ++ + F F G + VTSV GH+
Sbjct: 48 ILCVAEKNSVAKEIANILCPEFQSPNRLKSKSTTNVALYFPYKFCGEECNMIVTSVRGHL 107
Query: 61 FRLDFPPAYQDWNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+L F Y DW + NP+ L PV + + I +L ++ +L+LWLDCDR
Sbjct: 108 KQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYFSKISSYLILWLDCDR 167
Query: 119 EGENICFEVIECTGFQVNDARRKV-HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGENI FEV+ +N + + RA FS++T+ +I AM L PNR + AV+AR+
Sbjct: 168 EGENIAFEVL---SICLNSNKNLITFRAHFSAITKFEINNAMKKLSFPNRALSDAVEARK 224
Query: 178 EIDLKVGVAFTRFQT 192
EIDL+VG +FTRF T
Sbjct: 225 EIDLRVGSSFTRFLT 239
>gi|344229989|gb|EGV61874.1| hypothetical protein CANTEDRAFT_108430 [Candida tenuis ATCC 10573]
Length = 616
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH-EFDGMF-LGSHAY--IKVTSVVGH 59
+KVL VAEKPSIA + +VLSGG+ R + ++ + FD F H + +TSV GH
Sbjct: 1 MKVLCVAEKPSIAKEVTSVLSGGRSTRRDSRSKYNANFDFKFTFPGHGLCDVTMTSVTGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +DFP Y W P L APV K+ I +++ EAR +L++W DCDRE
Sbjct: 61 ITSMDFPAEYA-WGRVPPGRLLDAPVKIQPDKSKLAIHQNIANEARSANYLMIWTDCDRE 119
Query: 120 GENICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE I +E++E + + R V R FS + + IL A N N AV R
Sbjct: 120 GEAIGYEILEAA--KKGNTRLSLSSVWRPHFSHLEKNHILSAARNPQNLNMKTVEAVHCR 177
Query: 177 QEIDLKVGVAFTRFQT 192
QE+DL+VG +FTR T
Sbjct: 178 QEVDLRVGASFTRLLT 193
>gi|147826792|emb|CAN72799.1| hypothetical protein VITISV_022692 [Vitis vinifera]
Length = 632
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 75/131 (57%), Gaps = 39/131 (29%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
P K+LMVAEKPS ALSIA+ LS G + TR++S VHEF+G F GS+A KVTSV+G
Sbjct: 416 PHKILMVAEKPSSALSIASALSDGHMSTRRSSIXVHEFNGTFXGSNAQYKVTSVIG---- 471
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
L+ EAR CGHLVLW DCDREG+N
Sbjct: 472 -----------------------------------MRLSXEARDCGHLVLWXDCDREGDN 496
Query: 123 ICFEVIECTGF 133
ICFEV+ECTGF
Sbjct: 497 ICFEVVECTGF 507
>gi|312072253|ref|XP_003138981.1| DNA topoisomerase III [Loa loa]
gi|307765852|gb|EFO25086.1| DNA topoisomerase III [Loa loa]
Length = 800
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 8/205 (3%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEF-DGMFLGSHAYIKVTSVVG 58
P++ L VAEK A SIA +LS G R + ++++F + S Y+ +TSV G
Sbjct: 26 PMRALFVAEKNDAAKSIAAILSRGTSTRRDGRSRFNKIYQFVANVGQNSDCYVAMTSVSG 85
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ + FP ++++W + LF + K+ + L +E R LV+W DCDR
Sbjct: 86 HLLQHSFPASFKNWTETPIKMLFDVNIQKSTIPGMEDVKATLVEEIRKSDLLVIWTDCDR 145
Query: 119 EGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I EV+ CT N V+RARFS +T + +A+ NLV ++ AV+ R
Sbjct: 146 EGEAIGAEVVSVCTEVNRN---LDVYRARFSEITNTAVNRALNNLVRLDQRLVDAVECRS 202
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNL 202
E+DL++G AFTR QT + + + N+
Sbjct: 203 ELDLRIGAAFTRLQTLHLRNNFANI 227
>gi|392862729|gb|EAS36605.2| DNA topoisomerase III [Coccidioides immitis RS]
Length = 645
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEVHEFDGMFL----GSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG L T + + V ++ F ++ + +TSV+G
Sbjct: 4 RILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSFGPPWGNSSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF ++ W + P LF APV K+ I ++ +AR L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 119 EGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE+I EV + G + R +V RA+FS+ +L+A N + + + AV AR
Sbjct: 124 EGEHIGSEVRTQAVG---ANPRIEVKRAKFSNTERAHVLRAARNPIALDERQINAVAARI 180
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR T G L R IS
Sbjct: 181 ELDLRIGAAFTRLLTLQLGALGGALSERLIS 211
>gi|402468347|gb|EJW03513.1| hypothetical protein EDEG_00195 [Edhazardia aedis USNM 41457]
Length = 1086
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 5/190 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L VAEKPS+A +I+++LS T+ +F + + TSV+GH+F DF
Sbjct: 3 ILNVAEKPSVAKTISSLLSNNVHITKSDCKFTPNLKFVFKNND--MIFTSVLGHLFNNDF 60
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
Y DW NP L A + + ++IC++L + A+ L++W DCDREGENI
Sbjct: 61 GSEYNDWANVNPKSLLSADIQRKVVKENINICKNLKKLAQKADLLIIWTDCDREGENIGC 120
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E+ + +QV K RA FS +T ++I + NL N + AV+AR E+DL++G
Sbjct: 121 EIRDIV-YQVRKLNTK--RAVFSGITLREIKNSFENLKNLNELASEAVNARIELDLRIGS 177
Query: 186 AFTRFQTTYF 195
AFTR QT F
Sbjct: 178 AFTRLQTLSF 187
>gi|322702147|gb|EFY93895.1| DNA topoisomerase III [Metarhizium acridum CQMa 102]
Length = 689
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 29/231 (12%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++A LSGG + T R + + FD G LG + +T V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGGSMQTHNTRNQYIKNYSFDFDFGQALG-QCSVTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKA--------------------ESNPKVHIC 97
GH+ ++F Y++W+ P LF AP+ + E+ K I
Sbjct: 60 GHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAHVNDNGFMADWLENQDKKSIA 119
Query: 98 RHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILK 157
++L +AR LV+W DCDREGE+I E+++ + +A +V RA+FS+V +L
Sbjct: 120 KNLADQARYARLLVIWTDCDREGEHIGQEIVDAA--RKGNASIQVKRAKFSNVERAHVLS 177
Query: 158 AMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
A LV+ ++ + AV R E+DL++G AFTRF T + G ++S +S
Sbjct: 178 AARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLTLS 228
>gi|378729744|gb|EHY56203.1| DNA topoisomerase III [Exophiala dermatitidis NIH/UT8656]
Length = 625
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 19/219 (8%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTR--KASTEV--HEFDGMFL-GSHAYIKVTS 55
M K+L VAEKP+IA ++A L+GG+L TR + S V +EF+ F + + +TS
Sbjct: 1 MPGPKILCVAEKPAIAKAVAQHLAGGQLNTRPIRGSQYVKNYEFEFNFREWGNCSVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ LDF P Y+ W + P LF A K I ++ Q+AR L +W D
Sbjct: 61 VLGHLTALDFDPRYKSWKSCPPSQLFDATTLVTIDKDKKPIADNIQQQARYARILFIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNE 169
CDREGE+I G +V D +K V RA+FS+ +++A + ++ + +
Sbjct: 121 CDREGEHI--------GGEVRDQAKKGNPNILVKRAKFSNTERAHVIQAAHSPIDMDERQ 172
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AV AR E+DL++G +FTR Q+ Q NL + IS
Sbjct: 173 VSAVAARIELDLRIGASFTRLQSLELQCLSENLRDKMIS 211
>gi|353239154|emb|CCA71076.1| related to DNA topoisomerase III alpha [Piriformospora indica DSM
11827]
Length = 632
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 47 SHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARG 106
++A VT V GH+ LDFP ++ WN+ +P LF APV + R++ ARG
Sbjct: 14 TNASFTVTYVAGHITELDFPETHRKWNSCDPFTLFDAPVEVKHPQRVNELVRNIEIRARG 73
Query: 107 CGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN 166
L++W DCDREGE I +E+ + Q + R K+ RARFS++ I +A N +
Sbjct: 74 SDMLMIWTDCDREGEYIGYEIAQVC--QKVNRRIKIKRARFSAIIADQIHRAAQNPTNLD 131
Query: 167 RNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
+A AV ARQ +DL++G AFTR Q Q ++GNL
Sbjct: 132 LAQADAVIARQMLDLRLGAAFTRMQCMALQNRFGNL 167
>gi|392578148|gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM
1558]
Length = 1002
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 10/213 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMF-----LGS--HAYIKVTS 55
++VL VAEKPSIA SI +LSGG+ TR + + D + LG A VT+
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGRWDTRDSGHPYIRNLDFAYRLPPPLGGVGDADFTVTA 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF ++ W + +P LF AP+ + R+L EAR L++W D
Sbjct: 61 VLGHLTSSDFDENHRKWGSCDPFALFDAPILTYVDTKFKPVERNLINEARRADLLIIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGE+I EV+ + ++R +V RARFS++ I +A + + + +A AV+A
Sbjct: 121 CDREGEHIGSEVV--AACRKGNSRIRVKRARFSAIIPAQIHQACRSANDLDMKQADAVEA 178
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R +DL++G AF+R T Q + L + IS
Sbjct: 179 RINLDLRIGAAFSRLVTLGLQNRVPELGQQVIS 211
>gi|358378931|gb|EHK16612.1| hypothetical protein TRIVIDRAFT_162256 [Trichoderma virens Gv29-8]
Length = 660
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 15/223 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
+KVL VAEKPSI+ ++A LSGG T R + + FD G G + + +T V
Sbjct: 1 MKVLCVAEKPSISKAVAGHLSGGSFSTHNTRNKFIKNYSFDFDFGQQWGPSS-VTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ ++F Y++W+ P LF AP+ ++ K I +++ +A+ LV+W DCD
Sbjct: 60 GHLTNVEFTSEYKNWSHPPPESLFTAPIVTSD---KKDIAKNIADQAKYARLLVIWTDCD 116
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+++ + +A +V RA+FS+V +L A L+E + + AV AR
Sbjct: 117 REGEHIGQEIVDAA--KKGNAGIQVKRAKFSNVERAHVLSAARRLIELDEKQVNAVAARI 174
Query: 178 EIDLKVGVAFTRFQTT---YFQGKYGNLDSRFISLVFSSLFLI 217
E+DL++G AFTRF T + G +L + S F +L +
Sbjct: 175 ELDLRIGYAFTRFITNNLKHLGGPLADLVLSYGSCQFPTLGFV 217
>gi|302656146|ref|XP_003019829.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
gi|291183601|gb|EFE39205.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
Length = 622
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 16/212 (7%)
Query: 5 KVLMVAEKPSIA---LSIATVLSG--GKLYTRKASTEVHEFDGMF---LGSHAYIKVTSV 56
K+L VAEKP+IA +I SG G Y + +EFD F GS + + +TSV
Sbjct: 4 KILCVAEKPAIAKGQTNIVLYKSGIEGNQYVKN-----YEFDFTFGPPWGSCSVV-MTSV 57
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+GH+ DF P Y++WN+ NP LF A V A K+ I R++ ++AR L +W DC
Sbjct: 58 LGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKLGIARNIKRQARDSRALFIWTDC 117
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
DREGE+I EV + + + ++ RARFS+ +L+A + + AV AR
Sbjct: 118 DREGEHIGSEVRDQA--VLGNPSIEIKRARFSNTERTHVLEAARRPTGLDERQVDAVAAR 175
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR QT Q G L + IS
Sbjct: 176 IELDLRIGAAFTRLQTLQLQTLGGALAEKIIS 207
>gi|219122509|ref|XP_002181586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406862|gb|EEC46800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1009
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 116/218 (53%), Gaps = 28/218 (12%)
Query: 6 VLMVAEKPSIALSIATVLS----GGKLYTRKASTEV--HE---FDGMFLGSHA------- 49
VL VAEKPS+A ++A+V + R+ +V HE F +F +
Sbjct: 44 VLNVAEKPSVARALASVFARLPNAVDRGMRREGNQVFSHENVCFPSVFSQGNGVCVQGPS 103
Query: 50 -------YIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ 102
Y+ TSV GH+ DFPPAY W+ +P+ LF+AP+ + + + R L
Sbjct: 104 TSQRAALYMITTSVRGHLASQDFPPAY-GWSKCDPIALFEAPIETSYRDDMQPLERMLKS 162
Query: 103 EARGCGHLVLWLDCDREGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGN 161
+R L+LWLDCDREGE I EV C G +++R +V+RARFS+V +I +A+
Sbjct: 163 LSRQAQVLILWLDCDREGEAIGDEVRTVCLG---SNSRLQVYRARFSTVLPVEIERALQT 219
Query: 162 LVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
L N AV AR +DL+VG AFTRFQT Q K+
Sbjct: 220 LGRVNEYMVAAVQARSTLDLRVGAAFTRFQTLRLQRKF 257
>gi|296814980|ref|XP_002847827.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238840852|gb|EEQ30514.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 631
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 21/225 (9%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMF---LGSHAYIKV 53
MAP K+L VAEKP+IA +A LSGG+L T + +EFD F GS + + +
Sbjct: 1 MAP-KILCVAEKPAIAKLVAQHLSGGRLRTFNIEGNQYVKNYEFDFTFDPPWGSCSVV-M 58
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPV----------HKAESNPKVHICRHLNQE 103
TSV+GH+ +F P Y++W++ NP LF A V + + K+ I +++ +
Sbjct: 59 TSVLGHLTTSEFEPRYRNWSSCNPSQLFDANVITSVDKVRILSRCAVHEKLGIAKNIKIQ 118
Query: 104 ARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLV 163
AR L +W DCDREGE I EV + + R +V RA+FS+ +L+A +
Sbjct: 119 ARYSKALFIWTDCDREGEYIGSEVK--AQAVLGNPRIEVKRAKFSNTERTHVLQAARGPI 176
Query: 164 EPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+ + AV AR E+DL++G AFTR QT Q G L + IS
Sbjct: 177 GLDEQQVDAVAARIELDLRIGAAFTRLQTLQLQALGGVLAEKIIS 221
>gi|58259767|ref|XP_567296.1| DNA topoisomerase type I [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229346|gb|AAW45779.1| DNA topoisomerase type I, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL-------GSHAYIKVTS 55
++VL VAEKPSIA SI +LSGG+ TR + + +D ++ G A VT+
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGRWDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVTA 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF ++ W + +P LF APV + +L EAR L++W D
Sbjct: 61 VLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADILMIWTD 120
Query: 116 CDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CDREGE+I EV+ C N V RARFS++ I +A + + +A AV
Sbjct: 121 CDREGEHIGSEVVAACKKVNRNIL---VKRARFSAIIPAQIHQACRQANDLDMRQADAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R +DLKVG AFTR T Q + +L + IS
Sbjct: 178 TRISLDLKVGSAFTRLTTMTLQVRVPDLAEQLIS 211
>gi|294495508|ref|YP_003542001.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
gi|292666507|gb|ADE36356.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Length = 776
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ +++ AEK A +AT+LSGG TR+ ++ + F+ K+ + GH+
Sbjct: 1 MTIVVFAEKNKAAAKLATILSGGN-STREHVADLPVYS--FVAKGDEYKIIGLAGHITSY 57
Query: 64 DFPPAYQDWNASNPLDLFQA-PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF PAY+DW A +P L A P+ K + R + Q A+ +VL D DREGEN
Sbjct: 58 DFDPAYRDWKAIDPAVLLTADPIKNIT---KKNYERAVRQLAKQADSIVLACDYDREGEN 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I FE + QV + V RARFSS++ ++ KA NLVEP+ N AL+ D RQ +DL+
Sbjct: 115 IGFEARD-IALQVK--KVPVKRARFSSLSANEVQKAFNNLVEPDTNLALSADTRQILDLR 171
Query: 183 VGVAFTRFQT 192
+G AFTRF T
Sbjct: 172 MGAAFTRFMT 181
>gi|308198103|ref|XP_001386841.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
gi|149388862|gb|EAZ62818.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 109/196 (55%), Gaps = 12/196 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF----LGSHAYIKVTSVVG 58
+K+L VAEKPSIA ++ +LSGG+ TR + + + +D + LG + +TSVVG
Sbjct: 1 MKILCVAEKPSIAREVSRILSGGRFTTRNSRNKFIKNYDFTYNFTSLGI-CDVTMTSVVG 59
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +DFPPAYQ W P LF V E K + +++ EAR L++W DCDR
Sbjct: 60 HITNMDFPPAYQ-WGRCVPGRLFDVEV--IEKVTKQDVFDNISNEARTASRLMIWTDCDR 116
Query: 119 EGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE I FE+ + F+ N A + + R++FS + I+ A + + N AV R
Sbjct: 117 EGEFIGFEIYKA-AFKGNSAIQVGDIWRSQFSHLERSHIIDAASHPRSLDMNSVNAVACR 175
Query: 177 QEIDLKVGVAFTRFQT 192
EID +VG +FTR T
Sbjct: 176 MEIDFRVGTSFTRLLT 191
>gi|149241681|ref|XP_001526340.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450463|gb|EDK44719.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 619
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL---GSHAYIKVTSVVGH 59
+KVL VAEKPSIA +A++L GG++ R + + + +D FL + +TSVVGH
Sbjct: 1 MKVLCVAEKPSIAKEVASILGGGRVEVRNSKNKYIKNYDFKFLFPQSGQCDVTMTSVVGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDFPP Y W LF A + K + ++++EAR L++W DCDRE
Sbjct: 61 ITNLDFPPEYL-WGKCAASRLFTAEI--VTKITKQDVFDNISKEARNSDQLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE I E+ + + + R R V RARFS + + +L+A + E + A AV R
Sbjct: 118 GEFIGKEIFDAA--RKGNPRLTLRNVWRARFSHLDKSHVLRAARSPSELDMKSAAAVACR 175
Query: 177 QEIDLKVGVAFTRFQT 192
E+D +VG++FTR T
Sbjct: 176 MEVDFRVGLSFTRLLT 191
>gi|403369401|gb|EJY84543.1| DNA topoisomerase [Oxytricha trifallax]
Length = 894
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GH+ R+ FP + W S DL++ PV K + + ++L++ ++ L L
Sbjct: 1 MTSVSGHLMRMKFPIENKIWIDSKIKDLYRMPVVKDLIDGNARVLQNLHEMSQDVEELHL 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
WLDCDREGE I F+V + QVN V RA FS++T +D+ KA NL EPN+N A A
Sbjct: 61 WLDCDREGEAIAFDVADMCK-QVNKYML-VKRAHFSALTSQDVNKAAQNLQEPNKNLADA 118
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQ 196
V ARQEIDL++G +FT+ QT F+
Sbjct: 119 VKARQEIDLRIGASFTQLQTLSFK 142
>gi|341880276|gb|EGT36211.1| CBN-TOP-3 protein [Caenorhabditis brenneri]
Length = 763
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 5/201 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+ L VAEK +A +A +LS G + R +++ + G + VTSV GH+
Sbjct: 3 RALFVAEKNDVAKGVAAILSNGTSNRKEGRSKFNKIYTLNTELFGQPTAVSVTSVSGHLM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
F +W ++ + LF APV + I + L +EAR LV+W DCDREGE
Sbjct: 63 NWQFHENMANWQTTSMVQLFDAPVRHVVTPEMKLIEQTLREEARRHDVLVVWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+++ + + + ++RARFS +T+ I +A NL+ + AVD R E+DL
Sbjct: 123 AIGAEIVKVC--RETNRQMDIYRARFSEITKVAITRAARNLIRLDEKIVAAVDCRSELDL 180
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G AFTR QT + + ++ +L
Sbjct: 181 RIGSAFTRLQTLHLRNRFRDL 201
>gi|134116726|ref|XP_773035.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255655|gb|EAL18388.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1059
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL-------GSHAYIKVTS 55
++VL VAEKPSIA SI +LSGG+ TR + + +D ++ G A VT+
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGRWDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVTA 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF ++ W + +P LF APV + +L EAR L++W D
Sbjct: 61 VLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADILMIWTD 120
Query: 116 CDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CDREGE+I EV+ C N V RARFS++ I +A + + +A AV
Sbjct: 121 CDREGEHIGSEVVAACKKVNRNIL---VKRARFSAIIPAQIHQACRQANDLDMRQADAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R +DLKVG AFTR T Q + +L + IS
Sbjct: 178 TRISLDLKVGSAFTRLTTMTLQVRVPDLAEQLIS 211
>gi|322707318|gb|EFY98897.1| DNA topoisomerase III [Metarhizium anisopliae ARSEF 23]
Length = 680
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 29/231 (12%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFD---GMFLGSHAYIKVTSVV 57
++VL VAEKPSI+ ++A LSGG + T R + + FD G LG + + +T V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGGSMQTHGTRNQYIKNYSFDFDFGQALGPCS-VTMTCVT 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKA--------------------ESNPKVHIC 97
GH+ ++F Y++W+ P LF AP+ + ++ K I
Sbjct: 60 GHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAYVNHSGFVANCLDNQDKKSIA 119
Query: 98 RHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILK 157
++L +A+ LV+W DCDREGE+I E+++ + +A +V RA+FS+V +L
Sbjct: 120 KNLADQAQYARLLVIWTDCDREGEHIGQEIVDAA--RKGNASIQVKRAKFSNVERAHVLS 177
Query: 158 AMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
A LV+ ++ + AV R E+DL++G AFTRF T + G ++S +S
Sbjct: 178 AARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLTLS 228
>gi|405122849|gb|AFR97615.1| DNA topoisomerase type I [Cryptococcus neoformans var. grubii H99]
Length = 959
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL-------GSHAYIKVTS 55
++VL VAEKPSIA SI +LSGG+ TR + + +D ++ G A VT+
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGRWDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVTA 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ DF ++ W + +P LF APV + +L EAR L++W D
Sbjct: 61 VLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADILMIWTD 120
Query: 116 CDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CDREGE+I EV+ C N V RARFS++ I +A + + +A AV
Sbjct: 121 CDREGEHIGSEVVAACKKVNRNIL---VKRARFSAIIPAQIHQACRQANDLDMRQADAVA 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
R +DL++G AFTR T Q + +L + IS
Sbjct: 178 TRISLDLRIGSAFTRLTTMTLQVRVPDLAEQLIS 211
>gi|449016179|dbj|BAM79581.1| DNA topoisomerase III alpha [Cyanidioschyzon merolae strain 10D]
Length = 784
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 109/212 (51%), Gaps = 22/212 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE---FDGMFL-----GSHAYIK--- 52
+K L VAEKPS+A A VL G+ + + + H + G+F G+ +
Sbjct: 1 MKALHVAEKPSVARQAAAVLGHGRAERKCSCSPYHPNWFWSGVFEFSAKDGTRFVVDEQV 60
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKA-----ESNPKVHICRHLNQEARGC 107
TSV GHV LDF Y W+A P+D+F+ + + E N KV ++L Q AR C
Sbjct: 61 FTSVSGHVEELDFVTPYHKWSACEPVDIFRRDLVQTRRFVPERNAKV--AQNLGQLARTC 118
Query: 108 GHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR 167
+LVLWLD D EGE I EV + V RARFS+VT +D+ +A L N
Sbjct: 119 QYLVLWLDGDSEGEAISDEVQRICKLPPS----MVFRARFSAVTPRDLFRACATLDRVNA 174
Query: 168 NEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
AV RQEIDL+ G AFTR+ T + Q Y
Sbjct: 175 KVVEAVWIRQEIDLRAGAAFTRWLTRHIQRHY 206
>gi|336469613|gb|EGO57775.1| hypothetical protein NEUTE1DRAFT_81659 [Neurospora tetrasperma FGSC
2508]
Length = 662
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMF--LGSHAYIKVTSVVGH 59
++L VAEKPSIA ++AT LSGG T R T+ + F F + + +T+V GH
Sbjct: 3 RILCVAEKPSIAKAVATHLSGGSYQTHDTRDRYTKNYVFTCDFGPPWGRSTVTMTAVRGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +LDF ++ W P LF APV + I +++ +AR L +W DCDRE
Sbjct: 63 LTQLDFHQEFKKWEYPPPGRLFDAPVQTIYPHDMKTIAQNIENQARQADILYIWTDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
GE+I E+ E +R +V+RARFS++ IL A V + +A AV AR
Sbjct: 123 GEHIGSEIREA----ARKGKRNIQVYRARFSNIERAHILSAARRPVALDDKQAEAVAARI 178
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTRF T
Sbjct: 179 ELDLRIGSAFTRFLT 193
>gi|296416297|ref|XP_002837817.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633700|emb|CAZ82008.1| unnamed protein product [Tuber melanosporum]
Length = 616
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 9/210 (4%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLY-TRKASTEV---HEFDGMFLG--SHAYIKVTSVVG 58
KVL VAEKPSIA ++A LSGG + TR + ++F+ F + +TSVVG
Sbjct: 3 KVLCVAEKPSIAKAVAGHLSGGVIRNTRNTGNKYIKNYDFNYRFPPPWGECSVTMTSVVG 62
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H DF ++ W P LF A + S + +++ EAR L +W DCDR
Sbjct: 63 HTVSWDFADEFRRWKDCQPSALFDAATKQFVSPENKEVAANISSEARNAQILYIWTDCDR 122
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE I EV++ ++ R +V RA+FS++ IL A + + +A AV AR E
Sbjct: 123 EGEYIGTEVMDLA--MKSNPRVEVKRAKFSNIERAHILHAAQHPGVLDERQAAAVRARIE 180
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+DL++G AFTR+QT Q G LD + +S
Sbjct: 181 LDLRIGAAFTRWQTMLLQTVRG-LDEQVVS 209
>gi|343420008|emb|CCD19226.1| DNA topoisomerase III, putative, (fragment) [Trypanosoma vivax
Y486]
Length = 601
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
TSV H+ DFP ++W++ LDLF + K + R+L R L LW
Sbjct: 4 TSVAWHLMNDDFPAQTKNWSSFPLLDLFTVGITKHVKPELEQVKRNLESLGRQFTTLALW 63
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+DCDREGENICFEV+ Q + + +V RA FS++T +D+ A+ NL PN+ + A
Sbjct: 64 MDCDREGENICFEVMSVV--QTVNRQIEVCRAHFSALTRRDLFTAVHNLKTPNKALSDAA 121
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
+ARQEIDL++G F+RFQT F+ + ++
Sbjct: 122 EARQEIDLRIGAVFSRFQTIKFRDMFRDM 150
>gi|320166036|gb|EFW42935.1| topoisomerase III [Capsaspora owczarzaki ATCC 30864]
Length = 874
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
TSVVGH+ DF Y WN P LF+AP+ + I + L +EA+ LVLW
Sbjct: 4 TSVVGHLLASDFTADYSKWNTCAPEALFEAPIERFIPEKLRDIEKMLQREAQRAQWLVLW 63
Query: 114 LDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
DCDREGENI EV+ C N V RARFS+VT +DI A NL + + + A
Sbjct: 64 TDCDREGENIASEVVAVCKKVNRNLV---VLRARFSAVTPRDITHACNNLTQVDGRQVDA 120
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLD 203
VDAR E+DL++G AFTR QT Q L+
Sbjct: 121 VDARIELDLRIGSAFTRMQTQLLQPAIPELN 151
>gi|410082299|ref|XP_003958728.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
gi|372465317|emb|CCF59593.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
Length = 656
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 105/198 (53%), Gaps = 11/198 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-----SHAYIKVTSVV 57
+KVL VAEK SIA S++ +L GG+ +R + T V +D F G + +TSV
Sbjct: 1 MKVLCVAEKNSIAKSVSQILGGGRSTSRASGYTYVKNYDFNFYGFPFANRECQVTMTSVA 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDF + W N +LF AP+ + + I ++ +EAR +L++W DCD
Sbjct: 61 GHLSSLDFDNSQYGWGKCNIFELFDAPLSELMDKNQQKIAENIKREARNADYLMIWTDCD 120
Query: 118 REGENICFEVIECTGFQVNDARRK---VHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
REGE I +EV + Q + R V+RA FS + IL A N + + AV
Sbjct: 121 REGEYIGWEVFQAA--QKGNRRLTDGLVYRAIFSHLERSHILNAAKNPGKLDMRSVSAVG 178
Query: 175 ARQEIDLKVGVAFTRFQT 192
R E+DL+ GV+FTR T
Sbjct: 179 TRIELDLRTGVSFTRLLT 196
>gi|241953321|ref|XP_002419382.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
gi|223642722|emb|CAX42976.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
Length = 630
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 9/201 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL----GSHAYIKVTSVVG 58
+K+L VAEKPSIA ++A +L GG+ R +S + + +D F + +TSVVG
Sbjct: 1 MKILCVAEKPSIAKAVANILGGGRTSLRDSSEKFIKNYDFTFTFKPEDGPCQVTMTSVVG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ L+F A+ W P LF A + + VH ++ +EAR L++W DCDR
Sbjct: 61 HITNLEFESAFA-WGKCVPGRLFDADILTVITKKAVH--ENIAKEARNADKLMIWTDCDR 117
Query: 119 EGENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I FE++ + N + RA+FS + I++A N V + + AV R
Sbjct: 118 EGEYIGFEIMNAAKKYNRNLELNNIWRAKFSHLERNHIIRAAKNPVNLDMSAVAAVSCRM 177
Query: 178 EIDLKVGVAFTRFQTTYFQGK 198
E+D +VG +FTR T + K
Sbjct: 178 EVDFRVGTSFTRLLTDQLRQK 198
>gi|336476470|ref|YP_004615611.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
gi|335929851|gb|AEH60392.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
Length = 772
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 12/191 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY-TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ +++ EK A IA +LS GK R S V+EF G+ ++ K+ + GH+
Sbjct: 1 MTTVVITEKNRAAEQIARILSNGKYKRIRIESIPVYEFSS---GNQSW-KIMGLAGHIMG 56
Query: 63 LDFPPAYQDWNASNPLDLFQ-APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
D+P AY+DW A +P L P K + R L EA ++L D DREGE
Sbjct: 57 YDYPSAYKDWRAVDPGTLLDIEPEKKVLKEEYASVIRKLANEA---SEIILACDYDREGE 113
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
NI FE + +V+D K RA+FSS++ ++I +A +LVEP+ N A+A +ARQ +DL
Sbjct: 114 NIGFEAKDIAS-KVSDVSFK--RAKFSSLSPEEINRAFNSLVEPDVNMAMAAEARQILDL 170
Query: 182 KVGVAFTRFQT 192
K+GVAFTRF T
Sbjct: 171 KMGVAFTRFIT 181
>gi|300706240|ref|XP_002995407.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
gi|239604490|gb|EEQ81736.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
Length = 805
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/202 (32%), Positives = 118/202 (58%), Gaps = 14/202 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF--DGMFLGSHAYIKVTSVVGHVF 61
+ +L +AEKPS+A SI+ +LS + +R H++ + F ++ TSV+GH++
Sbjct: 1 MHILNIAEKPSVAKSISKILSQSIVTSRGR----HKYCPNITFKYNNDTFTFTSVLGHIY 56
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+F Y W + +P LF P+ K +++ ++L +++ +++W DCDREGE
Sbjct: 57 NLNFCKKYI-WESIDPKILFYEPLTKKIQEDFINLQKNLEEQSYKANKVIIWTDCDREGE 115
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
+I ++ + N ++ RARF++++ D+ +A+ NLV N NEA AVD R E+DL
Sbjct: 116 HIAQQIYNIIKSKNN---IEIKRARFNAISRNDVTRALENLVNININEADAVDCRMEMDL 172
Query: 182 KVGVAFTRFQT----TYFQGKY 199
++G +FT QT ++F+ ++
Sbjct: 173 RIGSSFTILQTLTLKSFFKSRH 194
>gi|213410242|ref|XP_002175891.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
gi|212003938|gb|EEB09598.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
Length = 621
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLGS--HAYIKVTSVVG 58
+++L VAEK SIA S+A++L GG R ++ ++FD F G + +T+V G
Sbjct: 1 MRILCVAEKNSIAKSVASILGGGHFRRRDTKSKYIKNYDFDYDFGGQLGDCNVTMTAVSG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ FPP Y W++ LF A + + S + ++ +EA +L +W DCDR
Sbjct: 61 HLTEASFPPEYSSWSSVPQEVLFDAQIRISVSKNSAPLADNIRREASNADYLYIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE I E+ + ++R +V RA F+++ I++A N N+ A AV AR E
Sbjct: 121 EGEYIGTEISNVA--RSGNSRIRVLRADFNNLERTHIIRAARNPRNLNQWAADAVAARIE 178
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+D ++G FTR QT Q + L R IS
Sbjct: 179 LDFRLGAIFTRIQTLQLQKAFEILKKRVIS 208
>gi|19113553|ref|NP_596761.1| DNA topoisomerase III [Schizosaccharomyces pombe 972h-]
gi|6686026|sp|O60126.2|TOP3_SCHPO RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|4388617|emb|CAA19038.1| DNA topoisomerase III [Schizosaccharomyces pombe]
gi|5836087|gb|AAD22485.2| topoisomerase 3 [Schizosaccharomyces pombe]
Length = 622
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY---TRKASTEVHEFDGMFLGS--HAYIKVTSVVG 58
++VL VAEK SIA S+A++L GG + TR + ++F F G+ + + +TSV G
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGHVRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVSG 60
Query: 59 HVFRLDFPPAYQDWNASNPLD-LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
H+ FP Y W +S P D LF A + + S + ++ +EAR +L +W DCD
Sbjct: 61 HLTEASFPSEYSSW-SSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+ + ++ +V RA F+++ I+ A + ++N A AVDAR
Sbjct: 120 REGEHIGVEISNVA--RASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+D ++G FTR QT Q + L ++ IS
Sbjct: 178 ELDFRLGAIFTRLQTIQLQKSFDILQNKIIS 208
>gi|429961669|gb|ELA41214.1| hypothetical protein VICG_01703 [Vittaforma corneae ATCC 50505]
Length = 791
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 77/193 (39%), Positives = 110/193 (56%), Gaps = 14/193 (7%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTR---KASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VL VAEKPS+A SI+ +LS TR K ++ F F ++ + TSV+GH+F
Sbjct: 3 VLNVAEKPSVANSISKILSTSCNKTRGMHKYCPNIY-FQTKFNSENSQMVFTSVLGHLFE 61
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHIC-RHLNQEARGCGHLVLWLDCDREGE 121
F + WN SNP DLF+ + NP+ + ++ + + +V+W DCDREGE
Sbjct: 62 FSFEDQGK-WNESNPKDLFKEEI-IGRINPEHKLAAENIKKLSERASLVVIWTDCDREGE 119
Query: 122 NICFEVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NI ++ + + RKV RARFS+++ +I A+ NL E N EA AVDAR E+
Sbjct: 120 NIARQIK-----TIIETHRKVCIKRARFSAISRNEIECALENLTEINFLEADAVDARIEL 174
Query: 180 DLKVGVAFTRFQT 192
DL++G AFTR QT
Sbjct: 175 DLRIGSAFTRIQT 187
>gi|363751663|ref|XP_003646048.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889683|gb|AET39231.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 15/204 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF----LGSHAY-IKVTSVV 57
++V+ VAEK SIA ++A LSGG R + + + +D + +G A + +T+V
Sbjct: 1 MRVVCVAEKNSIAKAVAHTLSGGGTRMRPSRCKYIKNYDFQYKFNWVGQQAVDVTMTAVA 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF Y WN +P +LF+A + + P I ++ QE R +L++W DCD
Sbjct: 61 GHLVHQDFGQEY-SWNMCDPRELFRAEIVEI---PNREIADNIGQECRDAQYLMIWTDCD 116
Query: 118 REGENICFEVIECT---GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
REGE I +E+ + Q++++R +HRA FS + + +A N V ++N AV
Sbjct: 117 REGEAIGWEIAQVAMRCNPQLDESR--IHRAVFSHLGRDHVTRAANNPVRIDKNAVDAVK 174
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR EIDL+ G AFTR T Q K
Sbjct: 175 ARCEIDLRAGYAFTRLLTGTLQCK 198
>gi|343420183|emb|CCD19182.1| DNA topoisomerase, putative [Trypanosoma vivax Y486]
Length = 803
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
TSV GH+ DFP ++W++ PLDLF + K + R+L R L LW
Sbjct: 4 TSVAGHLTNDDFPAQTKNWSSFPPLDLFTVGITKHVKPELEQVKRNLESLGRQSTTLALW 63
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+DCDREGENICFEV+ Q + + +V RA F ++T D+ A+ NL + + AV
Sbjct: 64 MDCDREGENICFEVMSV--VQTVNRQIEVCRAHFPTLTRGDLFTAVHNLKTLKKALSDAV 121
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
+ARQEIDL++G F+RFQT F+ + ++
Sbjct: 122 EARQEIDLRIGAVFSRFQTIKFRDMFRDM 150
>gi|151941072|gb|EDN59452.1| DNA topoisomerase III [Saccharomyces cerevisiae YJM789]
gi|349579943|dbj|GAA25104.1| K7_Top3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 656
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 23/214 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D MF G ++ + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFMFSGFPFARNGANCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EAR +L++W D
Sbjct: 61 VAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARR--------KVHRARFSSVTEKDILKAMGNLVEPNR 167
CDREGE I +E+ + +A+R +V+RA FS + + IL A N +
Sbjct: 121 CDREGEYIGWEIWQ-------EAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDM 173
Query: 168 NEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
AV R EIDL+ GV FTR T + K N
Sbjct: 174 KSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLRN 207
>gi|6323263|ref|NP_013335.1| DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|136001|sp|P13099.1|TOP3_YEAST RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|173002|gb|AAA35161.1| DNA topoisomerase [Saccharomyces cerevisiae]
gi|609366|gb|AAB67406.1| Top3p: DNA Topoisomerase III [Saccharomyces cerevisiae]
gi|285813654|tpg|DAA09550.1| TPA: DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|392297742|gb|EIW08841.1| Top3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 656
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 23/214 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D MF G ++ + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFMFSGFPFARNGANCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EAR +L++W D
Sbjct: 61 VAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARR--------KVHRARFSSVTEKDILKAMGNLVEPNR 167
CDREGE I +E+ + +A+R +V+RA FS + + IL A N +
Sbjct: 121 CDREGEYIGWEIWQ-------EAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDM 173
Query: 168 NEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
AV R EIDL+ GV FTR T + K N
Sbjct: 174 KSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLRN 207
>gi|190405298|gb|EDV08565.1| DNA topoisomerase III [Saccharomyces cerevisiae RM11-1a]
gi|256271738|gb|EEU06775.1| Top3p [Saccharomyces cerevisiae JAY291]
gi|259148217|emb|CAY81464.1| Top3p [Saccharomyces cerevisiae EC1118]
gi|323332349|gb|EGA73758.1| Top3p [Saccharomyces cerevisiae AWRI796]
gi|323336488|gb|EGA77755.1| Top3p [Saccharomyces cerevisiae Vin13]
gi|323347440|gb|EGA81711.1| Top3p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764070|gb|EHN05595.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 656
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 23/214 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D MF G ++ + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFMFSGFPFARNGANCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EAR +L++W D
Sbjct: 61 VAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARR--------KVHRARFSSVTEKDILKAMGNLVEPNR 167
CDREGE I +E+ + +A+R +V+RA FS + + IL A N +
Sbjct: 121 CDREGEYIGWEIWQ-------EAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDM 173
Query: 168 NEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
AV R EIDL+ GV FTR T + K N
Sbjct: 174 KSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLRN 207
>gi|238880879|gb|EEQ44517.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 629
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 9/201 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL----GSHAYIKVTSVVG 58
+++L VAEKPSI+ +A +L GG+ R + + + +D F + +TSV G
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRKKVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVAG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF A+ W P LF+A + + K I ++ +EAR L++W DCDR
Sbjct: 61 HITGLDFGSAFS-WGNCVPGRLFEADIETIIT--KKSIYENIAEEARNADKLMIWTDCDR 117
Query: 119 EGENICFEVIECT-GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I FE++ + N + RARFS + I++A N V + + AV R
Sbjct: 118 EGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCRM 177
Query: 178 EIDLKVGVAFTRFQTTYFQGK 198
EIDL+VG +FTR T + K
Sbjct: 178 EIDLRVGTSFTRLLTDQLRQK 198
>gi|451997773|gb|EMD90238.1| hypothetical protein COCHEDRAFT_1104554 [Cochliobolus
heterostrophus C5]
Length = 669
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSG-GKLYTRKASTEV--HEFDGMFLG-SHAYIKVTSVVGH 59
++VL VAEKPSIA ++A L G + + + V ++FD F + T V GH
Sbjct: 2 MRVLCVAEKPSIAKAVAGHLGGQARAESVRGIQWVKNYKFDFRFSNWGQCSVTFTCVAGH 61
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ DF Y+ W++ P+ LF+AP+ + K + ++ +AR L +W DCDRE
Sbjct: 62 IVAQDFTDRYKKWHSCQPVSLFEAPIVSGIAEDKKAVASNIETQARYASILFIWTDCDRE 121
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE+I E+ + + N +V RARFS++ +++A N + + +A AV AR E+
Sbjct: 122 GEHIGTEIRDI-ALKAN-PNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQAVSARIEL 179
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL++G AFTR QT Q
Sbjct: 180 DLRLGAAFTRMQTLALQ 196
>gi|346327587|gb|EGX97183.1| DNA topoisomerase III [Cordyceps militaris CM01]
Length = 612
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 5/169 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+T+V+GH+ L+F P +++W+ P LF APV + + K +I ++L ++AR LV+
Sbjct: 1 MTAVIGHLTNLEFTPEHKNWSFPPPESLFHAPVVTSVYDDKKNIAQNLAEQARFARLLVI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
W DCDREGE+I E+++ + +A+ +V RARFS+V +L A L+ + + A
Sbjct: 61 WTDCDREGEHIGQEIVDAA--KKGNAQLQVKRARFSNVERAHVLTAATRLINLDEKQVNA 118
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQ---GKYGNLDSRFISLVFSSLFLIC 218
V AR E+DL++G AFTRF T + G NL + S F +L +
Sbjct: 119 VAARMELDLRIGYAFTRFMTNNLRPLGGPMENLTLSYGSCQFPTLGFVV 167
>gi|406606993|emb|CCH41611.1| DNA topoisomerase III [Wickerhamomyces ciferrii]
Length = 623
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMF--LGSHAYIKVTSVVG 58
+KVL VAEK SIA +A +L GG++ + + ++F F LG + + +TSV G
Sbjct: 1 MKVLCVAEKNSIAKEVAKILGGGRIQISNSPYKYVKNYQFTFNFPQLG-NCDVTMTSVAG 59
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ +DFP AY+ W +P LF+AP+ S+ + I +++ + R L++W DCDR
Sbjct: 60 HLSGMDFPDAYK-WGRCSPGKLFEAPIVITMSDDQKKIAQNIERLGRTAQKLMIWTDCDR 118
Query: 119 EGENICFEVIECT-GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I E+++ N RA+FS + +LKA ++ ++N AV+ R
Sbjct: 119 EGEYIGKEILDVARKGNPNITIDNTLRAQFSHLERSHVLKAAREPIKLDQNAINAVETRM 178
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGN 201
E+DL+ G +FTRF FQ KY N
Sbjct: 179 ELDLRTGASFTRFLCDVFQ-KYKN 201
>gi|68465569|ref|XP_723146.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|68465862|ref|XP_722999.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445011|gb|EAL04282.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445167|gb|EAL04437.1| likely DNA topoisomerase III [Candida albicans SC5314]
Length = 629
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 9/201 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFL----GSHAYIKVTSVVG 58
+++L VAEKPSI+ +A +L GG+ R + + + +D F + +TSV G
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRKKVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVAG 60
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF A+ W P LF+A + + K I ++ +EAR L++W DCDR
Sbjct: 61 HITGLDFGSAFS-WGNCVPGRLFEADIKTIIT--KKSIYENIAEEARNADKLMIWTDCDR 117
Query: 119 EGENICFEVIECT-GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I FE++ + N + RARFS + I++A N V + + AV R
Sbjct: 118 EGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCRM 177
Query: 178 EIDLKVGVAFTRFQTTYFQGK 198
EIDL+VG +FTR T + K
Sbjct: 178 EIDLRVGTSFTRLLTDQLRQK 198
>gi|118374593|ref|XP_001020484.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89302251|gb|EAS00239.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1049
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
++L VAEKPS+A I+ VL G T + ++ V +F+ + TSV GH+
Sbjct: 3 QILNVAEKPSVAKEISRVLGNGSQKTLDSESKYNPVFQFEYKLKQEQVNMLFTSVTGHLI 62
Query: 62 RLDFPPAYQDWNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
F +++W + NP L + + K + K+ I R+L + AR L+LWLDCDRE
Sbjct: 63 SQKFDDKFKNWKSFNPSVLLDQSSEILKFVESDKISIQRNLIKWARQVDTLILWLDCDRE 122
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE I +E RA FSS+ ++ A+ NL +P + + AV++R EI
Sbjct: 123 GEAIAYE-----------------RAWFSSLDRLNVTNAINNLRDPRKELSEAVESRMEI 165
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSR 205
DL++G AFT FQT + + +L +
Sbjct: 166 DLRIGSAFTVFQTLNLKNNFQSLKDK 191
>gi|396493373|ref|XP_003844019.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
gi|312220599|emb|CBY00540.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
Length = 736
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSG--------GKLYTRKASTEVHEFD-GMFLGSHAYIKVTS 55
+VL VAEKPSIA ++A L+G G Y + + FD G + T
Sbjct: 3 RVLCVAEKPSIAKAVANHLAGQARAEDVPGIGYVKN-----YRFDFGFQQWGQCSVTFTC 57
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ DFP ++ W++ P LF AP+ ++ + K + +++ +AR L +W D
Sbjct: 58 VAGHIVAHDFPERFKKWHSCQPAALFDAPIEQSIAENKKVVAKNIETQARYASILYIWTD 117
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGE+I E+ + +V +V RARFS++ +++A + V + +A AV A
Sbjct: 118 CDREGEHIGTEIRD-IALKVK-PNMQVWRARFSNIERAHVIQASQSPVRLDEAQAQAVSA 175
Query: 176 RQEIDLKVGVAFTRFQTTYFQ 196
R E+DL++G AFTR QT Q
Sbjct: 176 RIELDLRLGAAFTRMQTLALQ 196
>gi|223999503|ref|XP_002289424.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220974632|gb|EED92961.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 672
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 22/228 (9%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLS---GGKLYT-RKASTEVHEFDGMFL--------GSH 48
MAP VL VAEKPS+A ++A V + G + ++ + ++ E D + G+
Sbjct: 1 MAPPIVLNVAEKPSVARALAQVFASTPGSRPRPDQRTAAQIFECDNVQFPCLYQQGNGTP 60
Query: 49 A-------YIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLN 101
A + TSV GH+ +F P++ W P+ LF AP+ + S + R L
Sbjct: 61 ANGRNEPHTMITTSVRGHLASQNFGPSF-GWTRCAPVALFDAPIDTSYSEDMEPLERMLR 119
Query: 102 QEARGCGHLVLWLDCDREGENICFEV--IECTGFQVNDARRKVHRARFSSVTEKDILKAM 159
Q ++ L+LWLDCDREGE I EV + G +++RA+FS+V +I +A+
Sbjct: 120 QLSQRASALILWLDCDREGEAISDEVRAVCLKGNPRLGTMNRIYRAKFSTVLPGEIERAL 179
Query: 160 GNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFI 207
L N N AV AR E DL+VG AFTRFQT Q K+ R +
Sbjct: 180 RTLGRVNENFVAAVQARSEHDLRVGAAFTRFQTLRLQKKFDGFGERGV 227
>gi|392512614|emb|CAD25295.2| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 722
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 19/195 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF-DGMFLGSHAYIKVTSVVGHVFR 62
+++L VAEKPS+A SI+++LS +L R+ +H++ + + TSV+GH+
Sbjct: 1 MRILNVAEKPSVARSISSILSK-ELNVRRG---LHQYCPNIHFDYGNQMVFTSVLGHLLS 56
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF + W+ +P LF + K V + ++ +EA C +++W DCDREGEN
Sbjct: 57 SDFEEKSR-WDEVDPEVLFTDRIVKHVQPEFVKVKENIEREALKCDMVIIWTDCDREGEN 115
Query: 123 ICFEVIECTGFQVNDARRKV-----HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
I G Q+ D KV RARFS +T +D+ A+ NL E N EA AV+ R
Sbjct: 116 I--------GRQIRDIVLKVKKIDVRRARFSGITLRDVESALRNLGEINEAEAEAVEVRI 167
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTR QT
Sbjct: 168 ELDLRIGSAFTRLQT 182
>gi|242220541|ref|XP_002476035.1| predicted protein [Postia placenta Mad-698-R]
gi|220724723|gb|EED78746.1| predicted protein [Postia placenta Mad-698-R]
Length = 707
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 14/199 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
++VL VAEKPS+A +I +LSGG+ TR+ + + +D + +++ VT+V GHV
Sbjct: 1 MRVLCVAEKPSVAKNITQILSGGQFTTRQTGCKYIKNYDFNYPQTNSLFTVTAVTGHVMD 60
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+F Y W + +P L + H P+ + ++ L++W DCDREGE
Sbjct: 61 HEFHYMYSKWTSCDPFALLSEEGSHSNRPKPQ--------KRSQARQTLMIWTDCDREGE 112
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI E+ CT N + + RARFS++ + I A + V+ + +A AV+AR +D
Sbjct: 113 NIGAEIAGICTEAHRNIS---IRRARFSAIIPQQIHNAAQHPVQLDTAQANAVEARILLD 169
Query: 181 LKVGVAFTRFQTTYFQGKY 199
L++G AFTR QT Q ++
Sbjct: 170 LRIGSAFTRLQTLNLQQRF 188
>gi|320587954|gb|EFX00429.1| DNA topoisomerase [Grosmannia clavigera kw1407]
Length = 636
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFD-GMFLGSHAYIKVTSVVGHVFRL 63
K+L VAEKPSI+ ++A LSGG+ Y FD G GS + +T V GH+ +
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQ-YQTYIKNYAFTFDFGPPYGS-CEVTMTCVTGHMTAM 60
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+ ++DW P LF APV + K I ++ ++AR + +W DCDREGE+I
Sbjct: 61 ELSSEFKDWKYPPPERLFDAPVQTIVPDDKKTIAENIERQARYSRAVFIWTDCDREGEHI 120
Query: 124 CFEVIECTGFQVNDARRK------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
G ++ DA RK V RA FS++ IL A +LV + + AV
Sbjct: 121 --------GSEIRDAARKGKPTIEVRRAHFSNIERAHILNAARSLVALDERQVDAVSTHI 172
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLV 210
E+DL++G AFTRF T + G L +S V
Sbjct: 173 ELDLRIGFAFTRFLTNNLRALGGPLAELVLSYV 205
>gi|115386112|ref|XP_001209597.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
gi|114190595|gb|EAU32295.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
Length = 588
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ LDF Y+ W + P LF+APVH++ + K I ++ ++A+ C L +
Sbjct: 1 MTSVIGHLTSLDFESHYKSWLSCPPGALFEAPVHESIDSDKTAIAENIREQAKYCKALFI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
W DCDREGE+I EV + + + R V RARFS+ + +L A L+E + +A A
Sbjct: 61 WTDCDREGEHIGTEVR--SQAKEGNPRIIVKRARFSNTEKAHVLTAARGLIELDDLQANA 118
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTR QT + L IS
Sbjct: 119 VAARIELDLRIGAAFTRLQTLQLKHLSAALADTLIS 154
>gi|255726540|ref|XP_002548196.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134120|gb|EER33675.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 619
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 11/202 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF-----LGSHAYIKVTSVV 57
+++L VAEKPSIA ++ +L GG++ R + ++ + +D F +G + + +TSVV
Sbjct: 1 MRILCVAEKPSIAKEVSQILGGGRVKVRNSRSKYIKNYDFTFNFKPEIG-NCEVTMTSVV 59
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDFPP + W LF A + E K + ++ EAR L++W DCD
Sbjct: 60 GHITGLDFPPEF-GWGCCAAGKLFDAAL--TEIVDKADVYDNIANEARRIDKLMIWTDCD 116
Query: 118 REGENICFEVIECTG-FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
REGE I FE+ F + +V RA+FS + +++A N ++ + AV R
Sbjct: 117 REGEYIGFEIFNAAKKFNQSLGLSQVWRAKFSHLERNHVIQAAKNPIKLDMRAVAAVSCR 176
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
EID +VG +FTR T + +
Sbjct: 177 MEIDFRVGTSFTRLLTDTLKAR 198
>gi|254565565|ref|XP_002489893.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|238029689|emb|CAY67612.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|328350304|emb|CCA36704.1| DNA topoisomerase III [Komagataella pastoris CBS 7435]
Length = 628
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 10/214 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFDGMFLG-SHAYIKVTSVVGH 59
+K+L VAEKPSIA S+A L GGK+ R +S + ++F F G + +TSV+GH
Sbjct: 1 MKILCVAEKPSIAKSVAYTLGGGKVTVRNSSVKYVKNYDFTFEFPGVGRCSVTMTSVLGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVH-KAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
+ + W P++LF + + K N + +++ EAR L++W DCDR
Sbjct: 61 LTEMTIDNNRYGWGKCLPINLFDSTIIVKENGNDSKKLVQNIANEARLSNQLMIWTDCDR 120
Query: 119 EGENICFEVIECTGFQVNDAR--RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE+I +E++ + N + V RA+FS + I+ A N + +R AV R
Sbjct: 121 EGEHIGWEILNAAS-KTNSSLTLENVWRAQFSHLERSHIISAAKNPKQLDRYAIDAVCTR 179
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNL--DSRFIS 208
E+DL+ G +FTRF T F+ + + + R IS
Sbjct: 180 MELDLRAGFSFTRFLTDLFKTNFQEIKEERRLIS 213
>gi|365992220|ref|XP_003672938.1| hypothetical protein NDAI_0L02110 [Naumovozyma dairenensis CBS 421]
gi|410730103|ref|XP_003671229.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
gi|401780049|emb|CCD25986.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
Length = 656
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 8/203 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
+KVL VAEK SIA +++ +L GG +R + T V +D F G + + +TSV
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGSCNSRDSGYTYVKNYDFKFDGFPFVSTNDCDVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DF P WN +LF AP+ N + I ++ +EAR L++W DC
Sbjct: 61 AGHLTSVDFRPDIYGWNKCRIDELFTAPLSTEMDNNQKKIAANIKREARYADFLMIWTDC 120
Query: 117 DREGENICFEVI-ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
DREGE I +E+ E +V+RA FS + + +L A + AV A
Sbjct: 121 DREGEYIGWEIFQEALKGNSRLTNSQVYRANFSHLERRHVLNAARRPQRLDLKSVDAVGA 180
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
R E+DL+ GV FTR T + K
Sbjct: 181 RIELDLRTGVTFTRLLTNTMKAK 203
>gi|367016122|ref|XP_003682560.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
gi|359750222|emb|CCE93349.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
Length = 652
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH------EFDGMFLGSHA---YIKVT 54
+KVL VAEK SIA ++A +L GG+ T + ST ++ +DG S + +T
Sbjct: 1 MKVLCVAEKNSIAKAVAQILGGGR-STARDSTYMYVKNYDFHYDGFPFASQPGGCQVTMT 59
Query: 55 SVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
SV GH+ +DF W N +LF APV + + I ++ +EA+ L++W
Sbjct: 60 SVAGHLSGVDFQSDRYGWGKCNVQELFDAPVSEVLDKNQRKIAENIKKEAQKADFLMIWT 119
Query: 115 DCDREGENICFEVIECTGFQVNDARRK-----VHRARFSSVTEKDILKAMGNLVEPNRNE 169
DCDREGE I +E+ + N R+ V+RA FS + + IL+A N +
Sbjct: 120 DCDREGEYIGWEIFR----EANRGNRRLTEAVVYRAVFSHLERRHILQAARNPQRLDMRS 175
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQGKYG 200
AV R EIDL+ GV FTR T + K G
Sbjct: 176 VNAVGTRMEIDLRAGVTFTRLLTETMRNKVG 206
>gi|119498155|ref|XP_001265835.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
gi|119413999|gb|EAW23938.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
Length = 571
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ LDF Y+ W + P LF+APV + K I ++ ++AR L +
Sbjct: 1 MTSVLGHLMALDFESQYKSWLSCPPGALFEAPVREFVEEDKKPIAENIKEQARMSRALFI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
W DCDREGE+I EV + + + R V RARFS+ +L+A L++ + N+A A
Sbjct: 61 WTDCDREGEHIGTEVRKKA--KEGNQRILVKRARFSNTERAHVLRAARALIDVDENQANA 118
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTR Q+ Q +L ++ IS
Sbjct: 119 VAARIELDLRIGAAFTRLQSLQLQRMCADLANKLIS 154
>gi|406867141|gb|EKD20180.1| DNA topoisomerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 671
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMFLGSHAYIKV--TSVV 57
P K+L VAEK SI+ ++A LSGG+ T R + + F F G +V T+V
Sbjct: 2 PGKILCVAEKNSISKAVAEHLSGGRFTTSNTRNQYVKNYSFTFDFGGEWGNCQVLMTAVS 61
Query: 58 GHVFRLDFPPAYQ-DWNASNPLDLFQAPVH-----KAESNPKVHICRHLNQEARGCGHLV 111
GH+ F P Y+ W+ P +LF APV K ES I +++ ++ARG L
Sbjct: 62 GHITEARFAPEYEGSWDYVPPQELFTAPVRVQVVDKPESQ---AIAQNIFEQARGAKALF 118
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
+W DCDREGE+I EV T + R V RARFS++ +++A N ++ + +
Sbjct: 119 IWTDCDREGEHIGGEV--RTEAHRGNPRLPVKRARFSNIERAHVIQAARNPIDLDDRQVS 176
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
AV R E+DL++G FTR+ T + GN+
Sbjct: 177 AVATRIELDLRIGFIFTRWLTVNLRTLGGNM 207
>gi|451847298|gb|EMD60606.1| hypothetical protein COCSADRAFT_163916 [Cochliobolus sativus
ND90Pr]
Length = 667
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 6/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSG-GKLYTRKASTEV--HEFDGMFLG-SHAYIKVTSVVGHV 60
+VL VAEKPSIA ++A L G + + + V ++FD F + T V GH+
Sbjct: 3 RVLCVAEKPSIAKAVAGHLGGQARAESVRGIQWVKNYKFDFRFNNWGQCSVTFTCVAGHI 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DF Y+ W++ P+ LF+AP+ + K + ++ +AR L +W DCDREG
Sbjct: 63 VAQDFNDRYKKWHSCQPVSLFEAPIVSGIAEDKKVVASNIETQARYASILFIWTDCDREG 122
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E+I E+ + + N +V RARFS++ +++A N + + +A AV AR E+D
Sbjct: 123 EHIGTEIRDI-ALKAN-PNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQAVSARIELD 180
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTR QT Q
Sbjct: 181 LRLGAAFTRMQTLALQ 196
>gi|448521188|ref|XP_003868447.1| Top3 protein [Candida orthopsilosis Co 90-125]
gi|380352787|emb|CCG25543.1| Top3 protein [Candida orthopsilosis]
Length = 617
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSH---AYIKVTSVVGH 59
+K+L VAEKPSIA +A +L GG++ R + + + +D F + +TSVVGH
Sbjct: 1 MKILCVAEKPSIAKEVANILGGGRVSVRNSKNKYIKNYDFKFAFPDRGLCDVTMTSVVGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDFPP YQ W LF A + + K + ++ EAR L++W DCDRE
Sbjct: 61 ITNLDFPPQYQ-WGKCAAERLFTAEIITKIT--KQDVFDNIAIEARNSDKLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE I E+ + + ++R V R++FS + IL+A + +E + A AV R
Sbjct: 118 GEFIGKEIFDAA--KKGNSRISLSDVWRSKFSHLERNHILRAAKSPIELDMKAASAVSCR 175
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E+D +VG +FTR T + K
Sbjct: 176 MELDFRVGTSFTRLLTDNLKSK 197
>gi|354545471|emb|CCE42199.1| hypothetical protein CPAR2_807480 [Candida parapsilosis]
Length = 615
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 24/202 (11%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSH---AYIKVTSVVGH 59
+K+L VAEKPSIA +A +L GG++ R + + + +D F + +TSVVGH
Sbjct: 1 MKILCVAEKPSIAKEVANILGGGRVQVRTSKNKYIKNYDFKFAFPDRGLCDVTMTSVVGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ LDFPP YQ W LF A + K + ++ +EAR L++W DCDRE
Sbjct: 61 ITNLDFPPQYQ-WGKCAAERLFTAEI--VTKITKQDVFDNIAKEARNADKLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARRK---------VHRARFSSVTEKDILKAMGNLVEPNRNEA 170
GE I G ++ DA RK V R++FS + IL+A + + + A
Sbjct: 118 GEFI--------GKEIFDAARKGNNRILLTDVWRSKFSHLERNHILRAAKSPISLDMKAA 169
Query: 171 LAVDARQEIDLKVGVAFTRFQT 192
AV R E+D +VG +FTR T
Sbjct: 170 SAVSCRMELDFRVGTSFTRLLT 191
>gi|452822724|gb|EME29741.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 646
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 28/222 (12%)
Query: 5 KVLMVAEKPSIA------------------LSIATVLSGGKLYTRK---ASTEVHEFDGM 43
++L VAEKPS A LS A + + R+ + +V+EF+
Sbjct: 3 RILNVAEKPSAARELSHALAKKENIKVSVFLSTAMCCLLNEAHNRREIGSRLKVYEFELD 62
Query: 44 FLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNP---LDLFQAPVHKAESNPKVHICRHL 100
+ ++V GH+ LDF Y+ W++ LD + P+ + K + +L
Sbjct: 63 LDHEKVTMVFSNVAGHIKALDFHENYRGWDSCEQVALLDPSKTPIKEYVPEDKKFLENNL 122
Query: 101 NQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARR---KVHRARFSSVTEKDILK 157
EAR C L LWLDCD EGE I +EV++ QVN + R V RARFS++T +D
Sbjct: 123 KNEARSCCKLFLWLDCDSEGEKIAYEVLDICQ-QVNMSFRIPDNVKRARFSAITPQDARN 181
Query: 158 AMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
A+ NL + V RQEIDL+ G AFTRF T + Q ++
Sbjct: 182 ALQNLTSLHYPTVSMVSTRQEIDLRAGAAFTRFLTKFIQNEF 223
>gi|440494418|gb|ELQ76798.1| DNA topoisomerase III alpha [Trachipleistophora hominis]
Length = 848
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 4 LKVLMVAEKPSIALSIATVL--SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+K+L +AEKPS+A SI + S T+ T VH+F S A++ TSV+GH++
Sbjct: 1 MKILNIAEKPSVAKSITRTIASSASAARTKYKYTPVHKFT---YNSDAHL-FTSVLGHLY 56
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+F + W +PL LF A + + + + +L + G +V+W DCDREGE
Sbjct: 57 TQEFTDN-RKWTECDPLTLFTADITEYIKDEFKALKENLLHLSTGVDKVVIWTDCDREGE 115
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+ + RK RARFS++T +I++AM N E + + +V AR E+DL
Sbjct: 116 YIALEIQKLLN-------RKCWRARFSAITRDEIVRAMENFQEIDMRQCDSVAARMELDL 168
Query: 182 KVGVAFTRFQT 192
++G +FTR QT
Sbjct: 169 RIGASFTRLQT 179
>gi|401826074|ref|XP_003887131.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
gi|392998289|gb|AFM98150.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
Length = 723
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 19/195 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF-DGMFLGSHAYIKVTSVVGHVFR 62
+++L VAEKPS+A SI+++LS ++ R+ +H++ + + TSV+GH+
Sbjct: 1 MRILNVAEKPSVARSISSILSK-EISVRRG---LHQYCPNIQFDYGDQMIFTSVLGHLLS 56
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DF + W+ +P LF + K I ++ +EA +V+W DCDREGEN
Sbjct: 57 SDFERKSR-WDEIDPEMLFTERIVKFVHPDFAKIKENIEREALRSDMVVIWTDCDREGEN 115
Query: 123 ICFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
I G Q+ D KV RARFS +T KDI A+ NL E N EA AVD R
Sbjct: 116 I--------GRQIRDIVLKVKKIDVKRARFSGITLKDIEGALKNLGEINEAEADAVDVRM 167
Query: 178 EIDLKVGVAFTRFQT 192
E+DL++G AFTR QT
Sbjct: 168 ELDLRIGSAFTRLQT 182
>gi|332261728|ref|XP_003279919.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Nomascus
leucogenys]
Length = 906
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CT 131
+ NPL LF+A + K V I + L +E R C LV+W DCDREGENI FE+I C
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
+ N +V RARFS +T + A NL EP+R + AVD RQE+DL++G AFTRFQ
Sbjct: 71 AVKPN---LQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQELDLRIGAAFTRFQ 127
Query: 192 TTYFQ 196
T Q
Sbjct: 128 TLRLQ 132
>gi|260946535|ref|XP_002617565.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
gi|238849419|gb|EEQ38883.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
Length = 627
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 14/206 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMF----LGSHAYIKVTSVVG 58
+KVL VAEK SIA +A +LSGG TR ++ + V +D ++ LG + +T+V G
Sbjct: 1 MKVLCVAEKNSIAKEVANILSGGSSRTRDSTYKFVKNYDFVYTFPALG-RCNVTMTAVSG 59
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAP----VHKAESNPKVHICRHLNQEARGCGHLVLWL 114
H+ DF P Y W P LF AP V + + I ++ +EAR L++W
Sbjct: 60 HILGTDFGPEYA-WGKCPPGRLFDAPFITKVSQDKDKRSQRIHDNIIKEARSADRLMIWT 118
Query: 115 DCDREGENICFEVIECTGFQVNDA--RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
DCDREGE I +E++ Q N + RA+FS + ++ A N ++ + A
Sbjct: 119 DCDREGEYIGWEIMHVAQ-QRNPSITLANTWRAQFSHLEPSHVVHAACNPLQLDMKLVEA 177
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGK 198
VD R+E DL+VG +FTRF T ++ K
Sbjct: 178 VDCRKEFDLRVGTSFTRFLTNLYKSK 203
>gi|320034640|gb|EFW16583.1| DNA topoisomerase 3-beta [Coccidioides posadasii str. Silveira]
Length = 634
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEVHEFDGMFL----GSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG L T + + V ++ F ++ + +TSV+G
Sbjct: 4 RILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSFGPPWGNSSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF ++ W + P LF APV K+ I ++ +AR L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 119 EGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE+I EV + G + R +V RA+F+ N + + + AV AR
Sbjct: 124 EGEHIGSEVRTQAVG---ANPRIEVKRAKFTR-----------NPIALDERQINAVAARI 169
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR T G L R IS
Sbjct: 170 ELDLRIGAAFTRLLTLQLGALGGALSERLIS 200
>gi|119194847|ref|XP_001248027.1| hypothetical protein CIMG_01798 [Coccidioides immitis RS]
Length = 634
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEVHEFDGMFL----GSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG L T + + V ++ F ++ + +TSV+G
Sbjct: 4 RILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSFGPPWGNSSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF ++ W + P LF APV K+ I ++ +AR L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 119 EGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE+I EV + G + R +V RA+F+ N + + + AV AR
Sbjct: 124 EGEHIGSEVRTQAVG---ANPRIEVKRAKFTR-----------NPIALDERQINAVAARI 169
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL++G AFTR T G L R IS
Sbjct: 170 ELDLRIGAAFTRLLTLQLGALGGALSERLIS 200
>gi|401624635|gb|EJS42690.1| top3p [Saccharomyces arboricola H-6]
Length = 655
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 115/209 (55%), Gaps = 19/209 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D ++ G + + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFIYSGFPFAGNGVNCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EA+ +L++W D
Sbjct: 61 VAGHLTGIDFSHEAYGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREAKNADYLMIWTD 120
Query: 116 CDREGENICFEVIECT---GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
CDREGE I +E+ + ++ D+ +V+RA FS + + IL A N PNR + +
Sbjct: 121 CDREGEYIGWEIWQEAKRGNRRIQDS--QVYRAVFSHLERQHILNAARN---PNRLDMKS 175
Query: 173 VDA---RQEIDLKVGVAFTRFQTTYFQGK 198
V+A R EIDL+ GV FTR T + K
Sbjct: 176 VNAVGTRIEIDLRAGVTFTRLLTETLRNK 204
>gi|20219039|gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza sativa Japonica Group]
gi|108706350|gb|ABF94145.1| DNA topoisomerase family protein, expressed [Oryza sativa Japonica
Group]
Length = 912
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVT 151
K I R L +EAR C LVLWLDCDREGENI +EVI+ C G ++R + RARFS++
Sbjct: 202 KQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAG---ANSRLNIWRARFSALI 258
Query: 152 EKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
+++I +A+ +L PN+ A AVDARQEIDL++G +FTRFQT + +
Sbjct: 259 DREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAF 306
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLS--GGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVG 58
++VL VAEKPS+A S+A +LS G + +R+ + V EFD G ++ VTSV G
Sbjct: 10 IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKA 88
H+ L+F ++ W++ +P DLF APV K+
Sbjct: 70 HLMELEFDDRFRRWHSCDPADLFHAPVRKS 99
>gi|366991737|ref|XP_003675634.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
gi|342301499|emb|CCC69268.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
Length = 663
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 12/205 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
+KVL VAEK SIA S++ +L GG+ R ++ T V +D + G + +TSV
Sbjct: 1 MKVLCVAEKNSIAKSVSQILGGGRSTIRDSTYTYVKNYDFQYSGFPFGNGQDCQVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DF W +LF AP+ + + I ++ +EAR L++W DC
Sbjct: 61 AGHLTSVDFRGDIYGWGKCPIYELFDAPLSTEMDSNQKKIASNIQKEARNADFLMIWTDC 120
Query: 117 DREGENICFEVI---ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
DREGE I +E++ E ++N+ ++V+RA FS + + IL A + AV
Sbjct: 121 DREGEYIGWEILQEAERGNRRLNE--QQVYRANFSHLERRHILDAARRPQRLDMKSVSAV 178
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGK 198
R E+DL+ GV FTR T + K
Sbjct: 179 RTRMELDLRTGVTFTRLLTDTMKQK 203
>gi|218192151|gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indica Group]
Length = 981
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVT 151
K I R L +EAR C LVLWLDCDREGENI +EVI+ C G ++R + RARFS++
Sbjct: 202 KQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAG---ANSRLNIWRARFSALI 258
Query: 152 EKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
+++I +A+ +L PN+ A AVDARQEIDL++G +FTRFQT + +
Sbjct: 259 DREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAF 306
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLS--GGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVG 58
++VL VAEKPS+A S+A +LS G + +R+ + V EFD G ++ VTSV G
Sbjct: 10 IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKA 88
H+ L+F ++ W++ +P DLF APV K+
Sbjct: 70 HLMELEFDDRFRRWHSCDPADLFHAPVRKS 99
>gi|156836960|ref|XP_001642518.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
gi|156113057|gb|EDO14660.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
Length = 650
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
++VL VAEK SIA +++ +LSGG R + V +D F G + +TSV
Sbjct: 1 MRVLCVAEKNSIAKAVSQILSGGNSNARDSGYMYVKNYDFRFNGFPFINDRDCDVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DFP W +LF AP+ + + I ++ +EAR L++W DC
Sbjct: 61 AGHLMGIDFPNDRYGWGKCPVHELFDAPLLQVYDKNQKKIADNIKKEARNADFLMIWTDC 120
Query: 117 DREGENICFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVEPNRNEAL 171
DREGE I +E+ + + R+++ RA FS + IL A N + N
Sbjct: 121 DREGEYIGWEIFQ----EAKKGNRRLNEDQMFRANFSHLERSHILYAARNPRRLDMNSVN 176
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
AV+ R EIDL+ GV FTR T + K
Sbjct: 177 AVETRMEIDLRAGVTFTRLLTDTMKNK 203
>gi|222624247|gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japonica Group]
Length = 983
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVT 151
K I R L +EAR C LVLWLDCDREGENI +EVI+ C G ++R + RARFS++
Sbjct: 202 KQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAG---ANSRLNIWRARFSALI 258
Query: 152 EKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
+++I +A+ +L PN+ A AVDARQEIDL++G +FTRFQT + +
Sbjct: 259 DREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAF 306
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLS--GGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVG 58
++VL VAEKPS+A S+A +LS G + +R+ + V EFD G ++ VTSV G
Sbjct: 10 IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKA 88
H+ L+F ++ W++ +P DLF APV K+
Sbjct: 70 HLMELEFDDRFRRWHSCDPADLFHAPVRKS 99
>gi|189188224|ref|XP_001930451.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972057|gb|EDU39556.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 665
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSG--------GKLYTRKASTEVHEFDGMF-LGSHAYIKVTS 55
+VL VAEKPSIA ++A L G G Y + ++FD F + + T
Sbjct: 3 RVLCVAEKPSIAKAVANHLGGQARAENVRGIQYVKN-----YKFDFRFNPWGNCSVTFTC 57
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ DF ++ W++ P LF AP+ + + K + ++ +AR L +W D
Sbjct: 58 VAGHIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKVVASNIEAQARYASILYIWTD 117
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGE+I E+ + + N +V RARFS++ +++A N + + +A AV A
Sbjct: 118 CDREGEHIGSEIRDI-ALKAN-PNMQVWRARFSNIERAHVIQASQNPIRLDEAQAEAVSA 175
Query: 176 RQEIDLKVGVAFTRFQTTYFQ 196
R E+DL++G AFTR QT Q
Sbjct: 176 RMELDLRLGAAFTRMQTFALQ 196
>gi|444322976|ref|XP_004182129.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
gi|387515175|emb|CCH62610.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
Length = 659
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
+KVL VAEK SIA ++A +L GG+ +R + V +D + G + + +TSV
Sbjct: 1 MKVLCVAEKNSIAKAVANILGGGRSSSRDSGYMYVKNYDFQYSGFSFANGNDCQVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DF W +LF AP+ + I ++ +EAR +L++W DC
Sbjct: 61 AGHLTGIDFSNERYGWGKCKIEELFDAPLSNVFDKNQKKITENIKREARYADYLMIWTDC 120
Query: 117 DREGENICFEVIECTGFQVNDARR----KVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
DREGE I +E+ + + RR +V RA FS + + IL A N + N A
Sbjct: 121 DREGEYIGWEIYQEA---LKGNRRLTDSQVFRAVFSHLERRHILSAARNPQRLDMNSVNA 177
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGK 198
V R EIDL+ GV FTR T + K
Sbjct: 178 VGTRIEIDLRAGVTFTRLLTDTMRNK 203
>gi|452846702|gb|EME48634.1| hypothetical protein DOTSEDRAFT_67618 [Dothistroma septosporum
NZE10]
Length = 675
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 8/195 (4%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGG-KLYTRKASTEVH----EFDGMF-LGSHAYIKVTSV 56
P KVL VAEKPSIA ++A LSG + R + V+ EF F + +TSV
Sbjct: 2 PTKVLCVAEKPSIAKAVANHLSGNERAQPRNITGNVYIKNYEFQYNFPQWGPCDVTMTSV 61
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ DF ++ W + +P LF A + + I +++ AR +L +W DC
Sbjct: 62 TGHMMASDFDSQHRGWYSCDPSALFDARIETFVKDQSKAIAKNIETRARYAQYLYIWTDC 121
Query: 117 DREGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DREGENI E+ + D ++ + RARFS++ ++ A N V + +A AV
Sbjct: 122 DREGENIGVEIRDAAAKIKPDLKQPGRTVRARFSNIERAHVINAARNPVPLDEAQANAVF 181
Query: 175 ARQEIDLKVGVAFTR 189
AR EIDL++G FTR
Sbjct: 182 ARMEIDLRIGACFTR 196
>gi|194383072|dbj|BAG59092.1| unnamed protein product [Homo sapiens]
Length = 906
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CT 131
+ NPL LF+A + K V I + L +E R C LV+W DCDREGENI FE+I C
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
+ N +V RARFS +T + A NL EP++ + AVD RQE+DL++G AFTRFQ
Sbjct: 71 AVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQ 127
Query: 192 TTYFQ 196
T Q
Sbjct: 128 TLRLQ 132
>gi|397476897|ref|XP_003809827.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Pan paniscus]
Length = 906
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CT 131
+ NPL LF+A + K V I + L +E R C LV+W DCDREGENI FE+I C
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
+ N +V RARFS +T + A NL EP++ + AVD RQE+DL++G AFTRFQ
Sbjct: 71 AVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQ 127
Query: 192 TTYFQ 196
T Q
Sbjct: 128 TLRLQ 132
>gi|410051780|ref|XP_003953166.1| PREDICTED: DNA topoisomerase 3-alpha [Pan troglodytes]
Length = 906
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CT 131
+ NPL LF+A + K V I + L +E R C LV+W DCDREGENI FE+I C
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
+ N +V RARFS +T + A NL EP++ + AVD RQE+DL++G AFTRFQ
Sbjct: 71 AVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQ 127
Query: 192 TTYFQ 196
T Q
Sbjct: 128 TLRLQ 132
>gi|398398505|ref|XP_003852710.1| DNA topoisomerase 3 [Zymoseptoria tritici IPO323]
gi|339472591|gb|EGP87686.1| hypothetical protein MYCGRDRAFT_71866 [Zymoseptoria tritici IPO323]
Length = 636
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 108/212 (50%), Gaps = 7/212 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLG-SHAYIKVTSVVG 58
++VL VAEKPSIA ++A L GG++ R + + FD F G + +TSV G
Sbjct: 3 IQVLCVAEKPSIAKAVANHLGGGQVQCRSIQGNQFIKNYIFDYNFPGWGQCSVTMTSVAG 62
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ DFP Y+ W + +P LF+ + N + I ++ +A+ +L +W DCDR
Sbjct: 63 HLMSHDFPREYKGWQSCDPSALFECRIESYIDNERKAIAANIENQAQYARYLYIWTDCDR 122
Query: 119 EGENICFEV--IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
EGE I E+ + C K RARFS++ I+ A + + +A AV +R
Sbjct: 123 EGEAIGSEIRDVACKKNAYLRNPGKTVRARFSNIERAHIIAAARAPIPLDEAQAAAVASR 182
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+DL+VGVAFTR + Q + IS
Sbjct: 183 IELDLRVGVAFTRNLSLTLQAMIPGREGSVIS 214
>gi|255716548|ref|XP_002554555.1| KLTH0F08118p [Lachancea thermotolerans]
gi|238935938|emb|CAR24118.1| KLTH0F08118p [Lachancea thermotolerans CBS 6340]
Length = 627
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFD---GMFLGSHAYIKVTSVVGHV 60
+V+ VAEK SIA ++A +LSGG+ R + + + +D + + +TSV GH+
Sbjct: 3 RVVCVAEKNSIAKAVAGILSGGRCSRRDSPNKYIKNYDFTFSFGFSGSSSVTMTSVAGHL 62
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LD A+ W +F AP+ + + I ++ +E R +L++W DCDREG
Sbjct: 63 TGLDLDQAH-GWGKCPIPQVFDAPIVDTRTKDQQKIADNIKKECRNADYLMIWTDCDREG 121
Query: 121 ENICFEVIECTGFQVNDA-RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA---R 176
E I +E+++ T Q N + + V+RA FS + I+ A N P R + AVDA R
Sbjct: 122 EYIGWEIVQ-TAIQANQSLQANVYRAVFSHLESGHIMHAARN---PKRLDQRAVDAVRTR 177
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
E+DL+ GVAFTRF T G
Sbjct: 178 MEVDLRSGVAFTRFLTELLGSTVG 201
>gi|50311957|ref|XP_456010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645146|emb|CAG98718.1| KLLA0F20724p [Kluyveromyces lactis]
Length = 659
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV-------HEFDGMFLGSHAYIKVTSV 56
+K+L VAEK SIA ++A +LSGG+ R +++ ++F + +G + +T+V
Sbjct: 2 VKILCVAEKNSIAKNVAQILSGGRSSMRPSTSPYIKNYDFQYDFQWLNMG-RCNVTMTAV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ L F W +P LF AP + I ++L E R HL++W DC
Sbjct: 61 AGHLMNLAFSQNEYGWGKCDPNLLFDAPTIDEMDD---KIVKNLQNEGRHATHLMIWTDC 117
Query: 117 DREGENICFEVIECTG--FQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
DREGE I +E+++ + V+RA FS + I+ + + ++ + AV
Sbjct: 118 DREGECIGWEIVQAVNRSNSSLVSSDSVYRAVFSHLEPSHIIASANRPRKLDQRQVDAVR 177
Query: 175 ARQEIDLKVGVAFTRFQTTYFQ 196
ARQEIDL+ G+AFTR T ++
Sbjct: 178 ARQEIDLRAGLAFTRLLTGNYR 199
>gi|402577699|gb|EJW71655.1| hypothetical protein WUBG_17433, partial [Wuchereria bancrofti]
Length = 111
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 5/106 (4%)
Query: 99 HLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARR-----KVHRARFSSVTEK 153
+L EA+GC LVLWLDCD+EGENICFEVIE + R V+RA FS++T K
Sbjct: 6 YLASEAKGCDFLVLWLDCDKEGENICFEVIEAVRNSIKKPRTGDIMGNVYRAHFSAITAK 65
Query: 154 DILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
DI AM NL PN NE+L+VDARQE+DL+ + T F +
Sbjct: 66 DIKSAMRNLGRPNINESLSVDARQELDLRTWLCLHTLPNTIFPSNF 111
>gi|429966189|gb|ELA48186.1| hypothetical protein VCUG_00424 [Vavraia culicis 'floridensis']
Length = 849
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 4 LKVLMVAEKPSIALSIATVL--SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF 61
+K+L +AEKPS+A SI + + +T+ T VH+F S A++ TSV+GH++
Sbjct: 1 MKILNIAEKPSVAKSITRTIVNTSSTGHTKYKYTPVHKF---VYNSDAHV-FTSVLGHLY 56
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+F + W +P+ LF + + + + +L + +V+W DCDREGE
Sbjct: 57 TQEFTEN-RKWTECDPIALFTTNITEYIKDEFRALKENLQHLSASADKVVIWTDCDREGE 115
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+ + G R+ RARFS++T +I++AM + E + + +V AR E+DL
Sbjct: 116 YIALEIQKLLG-------RQCWRARFSAITRDEIIRAMESYREIDTKQCDSVAARMELDL 168
Query: 182 KVGVAFTRFQT 192
++G +FTR QT
Sbjct: 169 RIGASFTRLQT 179
>gi|410669965|ref|YP_006922336.1| DNA topoisomerase [Methanolobus psychrophilus R15]
gi|409169093|gb|AFV22968.1| DNA topoisomerase [Methanolobus psychrophilus R15]
Length = 774
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 8/200 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ +++ EK A IA +LS G + R + + +D F ++ + GH+
Sbjct: 1 MSIVVFTEKNKAAAQIAGILSEGG-FNRASIEGIPVYD--FKKDGKEWRIMGLSGHIMGY 57
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
DFPP +W +P L P K + K + ++G ++L D DREGENI
Sbjct: 58 DFPPELNNWRGCDPAVLLDTPPVKNVT--KQPYAAAIALVSKGADEIILACDFDREGENI 115
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
FE ++ V RARFSS++E +I +A NLVEP+ N A++ +ARQ +DLK+
Sbjct: 116 GFEA---KSLAEKVSKSPVKRARFSSLSESEIRQAFSNLVEPDFNLAMSAEARQILDLKM 172
Query: 184 GVAFTRFQTTYFQGKYGNLD 203
G AFTRF T Q + D
Sbjct: 173 GAAFTRFLTLAVQQRARTKD 192
>gi|315040584|ref|XP_003169669.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
gi|311345631|gb|EFR04834.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
Length = 671
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 101/196 (51%), Gaps = 5/196 (2%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMF-LGSHAYIKVTSVVGH 59
MA VL VAEKPSIA +IA L + R + +EFD F H + +TSV+GH
Sbjct: 1 MAVRTVLCVAEKPSIAKAIANHLGDRVITVRNPYVKNYEFDYTFPQWGHCSVIMTSVLGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ +F P ++ W + +P LF A + + + ++ + AR L +W DCDRE
Sbjct: 61 LLSHEFEPRFKSWTSCDPSALFDAGIEVFIGSKSKPVADNIKRHARRADVLFIWTDCDRE 120
Query: 120 GENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
GE+I + I Q N A + RA FS++ I+ A + N +A AV AR
Sbjct: 121 GEHIGTK-IRLVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLNEAQANAVAAR 179
Query: 177 QEIDLKVGVAFTRFQT 192
E+DL+VG +FTR T
Sbjct: 180 IELDLRVGASFTRHLT 195
>gi|330914108|ref|XP_003296497.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
gi|311331314|gb|EFQ95407.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
Length = 667
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 16/201 (7%)
Query: 5 KVLMVAEKPSIALSIATVLSG--------GKLYTRKASTEVHEFDGMF-LGSHAYIKVTS 55
+VL VAEKPSIA ++A L G G Y + ++FD F + T
Sbjct: 3 RVLCVAEKPSIAKAVANHLGGQARAENVRGIQYVKN-----YKFDFRFNPWGDCSVTFTC 57
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ DF ++ W++ P LF AP+ + + K + ++ +AR L +W D
Sbjct: 58 VAGHIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKIVASNIEAQARYASILYIWTD 117
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
CDREGE+I ++ + + N +V RARFS++ +++A N + + +A AV A
Sbjct: 118 CDREGEHIGSQIRDI-ALKAN-PNMQVWRARFSNIERAHVIQASQNPIRLDEAQAEAVSA 175
Query: 176 RQEIDLKVGVAFTRFQTTYFQ 196
R E+DL++G AFTR QT Q
Sbjct: 176 RIELDLRLGAAFTRMQTFALQ 196
>gi|432328623|ref|YP_007246767.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135332|gb|AGB04601.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 747
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 12/188 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ +L++AEK + A IA +LSGGK T K V + +G Y V + GH+ +L
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGKFETVKKGRNV--YYSFSMGGDRYF-VVPLRGHILQL 57
Query: 64 DFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
D+P ++ WN + L + PV + ++L ++A L++ D DREGE
Sbjct: 58 DYPEKFKSWNLKDLQKLVDEEPVKIVKEKGVASTLKNLAKDA---DLLIIATDYDREGEL 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E + +G+ R KV RA+FS++TE++I A NLV+ N N A A + RQ+IDL
Sbjct: 115 IGVEALSISGY-----RGKVKRAKFSALTEQEIKNAFENLVDVNYNLASAAETRQKIDLA 169
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 170 WGASLTRF 177
>gi|254579749|ref|XP_002495860.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
gi|238938751|emb|CAR26927.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
Length = 650
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 9/204 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ L GG R + V +D F G + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQTLGGGNCNARDSGYMYVKNYDFSFDGFPFAQGTGSCQVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DFP W +LF AP+++ + I ++ +EAR L++W D
Sbjct: 61 VAGHLTGIDFPNERYGWGKCRIDELFDAPINEVFDKNQKKIADNIRKEARNANFLMIWTD 120
Query: 116 CDREGENICFEVI-ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
CDREGE I +E+ E + +++RA FS + + I+ A + AV
Sbjct: 121 CDREGEYIGWEISREASKNNSRLTSNQIYRAVFSHLERRHIIDAARRPQRLDMGSVNAVG 180
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
R EIDL+ GV FTR T + K
Sbjct: 181 TRMEIDLRAGVTFTRLLTETMRNK 204
>gi|91772728|ref|YP_565420.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
gi|91711743|gb|ABE51670.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 780
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEF--DGMFLGSHAYIKVTSVVGHV 60
+ ++ EK A I+T+LSGG V+EF DG K+ + GH+
Sbjct: 1 MTTVVFTEKNKAAAQISTILSGGSAKRSIVDGVSVYEFQRDGSLW------KIMGLAGHI 54
Query: 61 FRLDFPPAYQDWNASNPLDLFQA-PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
D+P + +W +P L PV + K + + ++G LVL D DRE
Sbjct: 55 MGYDYPEEFHNWRDVDPAALLDTDPVKQIN---KASFGSAILKISKGADLLVLACDFDRE 111
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GENI FE + +V+DA V RARFSS+++ +I KA +LVEP+ N A++ +ARQ +
Sbjct: 112 GENIGFEA-KSIAEKVSDA--TVKRARFSSLSKSEIEKAFNDLVEPDENMAMSAEARQIL 168
Query: 180 DLKVGVAFTRFQT 192
DLK+G +FTRF T
Sbjct: 169 DLKMGASFTRFVT 181
>gi|344301281|gb|EGW31593.1| DNA topoisomerase [Spathaspora passalidarum NRRL Y-27907]
Length = 613
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 16/198 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHA---YIKVTSVVGH 59
++VL VAEKPSIA ++A +L GG + R+++++ + +D F + A + +TSVVGH
Sbjct: 1 MRVLCVAEKPSIARAVANILGGGNVNMRESNSKYIKNYDFSFNFAEAGNCEVTMTSVVGH 60
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+ RL+ P + W + LF + E K + ++++EA L++W DCDRE
Sbjct: 61 IIRLETKPENR-WGMCSHGKLFDCDL--VELVDKQDVFDNISKEAATANKLMIWTDCDRE 117
Query: 120 GENICFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
GE I FE+ + N R++ R +FS + I++A N + + AV
Sbjct: 118 GEYIGFEIFKA----ANKGNRRIQIADIWRGKFSHLERNHIIRAANNPIRLDMKSVAAVA 173
Query: 175 ARQEIDLKVGVAFTRFQT 192
R E+D +VG +FTR T
Sbjct: 174 CRMEVDFRVGTSFTRLLT 191
>gi|435851915|ref|YP_007313501.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
gi|433662545|gb|AGB49971.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
Length = 791
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ V++ EK A IA +LSGGK RK V + MF + +V + GH+
Sbjct: 14 MTVVVFTEKNKAASQIANILSGGK-PDRKLVEGVPVY--MFRRNGQEWQVMGLSGHIMGY 70
Query: 64 DFPPAYQDWNASNPLDLFQA-PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFP +W + +P L P+ P L +EA ++L D DREGEN
Sbjct: 71 DFPQELNNWRSVDPAILIDTRPIKTVTKKPFADAIISLAREADA---IILACDFDREGEN 127
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I FE E +R V RARFSS+++ +I+KA N VEP+ A++ +ARQ +DLK
Sbjct: 128 IGFEAKE---LASRVSRAPVKRARFSSLSDSEIIKAFDNPVEPDAAMAMSAEARQILDLK 184
Query: 183 VGVAFTRFQT 192
+G AFTR+ T
Sbjct: 185 MGAAFTRYLT 194
>gi|367006322|ref|XP_003687892.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
gi|357526198|emb|CCE65458.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
Length = 651
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
++VL VAEK SIA +++ +L GG R + V +D F G + +TSV
Sbjct: 1 MRVLCVAEKNSIAKAVSQILGGGSSIARDSGYMYVKNYDFNFSGFPFADSRDCQVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DF W +LF AP+ + + I ++ +EAR L++W DC
Sbjct: 61 AGHLTGVDFANERYGWGKCAIHELFDAPLSQTLDKNQKKIADNIKREARNADALMIWTDC 120
Query: 117 DREGENICFEV-IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
DREGE I +E+ IE + ++RA FS + IL A N + N AV
Sbjct: 121 DREGEYIGWEILIEAKKGNGSLNESNIYRAVFSHLERSHILHAARNPKRLDMNSVHAVGT 180
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
R EIDL+ GV+FTR T + K
Sbjct: 181 RMEIDLRAGVSFTRLLTETMKPK 203
>gi|403309311|ref|XP_003945052.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Saimiri boliviensis
boliviensis]
Length = 586
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%)
Query: 134 QVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTT 193
+ + + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE+DL++G AFTRFQT
Sbjct: 228 KAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTK 287
Query: 194 YFQGKYGNLDSRFISL 209
YFQGKYG+LDS IS
Sbjct: 288 YFQGKYGDLDSSLISF 303
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLN 101
LDF Y W+ +P +LF QAP K E+NPK+++ + L
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQ 103
>gi|327353792|gb|EGE82649.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 757
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 111/215 (51%), Gaps = 14/215 (6%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLG-SHAYIKVTSVVGHV 60
VL VAEKPSIA +IA L G ++ T + +EFD F H + +TSV+GH+
Sbjct: 6 VLCVAEKPSIAKAIANHL-GDRVITHNIQGNPYVKNYEFDYTFRQWGHCSVTMTSVLGHL 64
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F P Y+ W + +P LF A + + I ++ + AR G L +W DCDREG
Sbjct: 65 LSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFIWTDCDREG 124
Query: 121 ENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
E+I E I Q N A + RA FS++ I+ A + + +A AV +R
Sbjct: 125 EHIGTE-IRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQANAVASRI 183
Query: 178 EIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 184 ELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLIS 218
>gi|239608653|gb|EEQ85640.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 674
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 111/215 (51%), Gaps = 14/215 (6%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFLG-SHAYIKVTSVVGHV 60
VL VAEKPSIA +IA L G ++ T + +EFD F H + +TSV+GH+
Sbjct: 6 VLCVAEKPSIAKAIANHL-GDRVITHNIQGNPYVKNYEFDYTFRQWGHCSVTMTSVLGHL 64
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F P Y+ W + +P LF A + + I ++ + AR G L +W DCDREG
Sbjct: 65 LSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFIWTDCDREG 124
Query: 121 ENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
E+I E I Q N A + RA FS++ I+ A + + +A AV +R
Sbjct: 125 EHIGTE-IRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQANAVASRI 183
Query: 178 EIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 184 ELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLIS 218
>gi|50288605|ref|XP_446732.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526040|emb|CAG59659.1| unnamed protein product [Candida glabrata]
Length = 650
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG------SHAYIKVTSV 56
+KVL VAEK SIA +++ +L GG+L R + T + +D + G + + +TSV
Sbjct: 1 MKVLCVAEKNSIAKAVSGILGGGRLSVRDSGYTYIKNYDFNYSGFSFAGGNDVQVTMTSV 60
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GH+ +DF W LF AP+++ + I ++ +EA+ L++W DC
Sbjct: 61 AGHLTGVDFAHEQYGWGNCRIEQLFDAPLNEVMDKNQQKIAANIRREAKFADVLMIWTDC 120
Query: 117 DREGENICFEVI---ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
DREGE I +EV + + ++ND +V+RA FS + IL+A + AV
Sbjct: 121 DREGEYIGWEVYMEAQKSNRRLND--NQVYRAVFSHLERSHILQAAHRPHRLDMRSVNAV 178
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNLDS 204
R EIDL+ GV FTR T + K + S
Sbjct: 179 RTRIEIDLRAGVTFTRLLTETMRNKVASSQS 209
>gi|395517927|ref|XP_003763121.1| PREDICTED: DNA topoisomerase 3-alpha, partial [Sarcophilus
harrisii]
Length = 888
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CT 131
+ NPL LF+A + K V I + L +E + C L++W DCDREGENI FE+I C
Sbjct: 1 QSCNPLVLFEAQIEKYCPENFVDIKKTLEKEVKQCQSLLIWTDCDREGENIGFEIIHVCK 60
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
+ N +V RARFS +T + A +L EP++ + AV+ RQE+DL++G AFTRFQ
Sbjct: 61 AVKPN---LRVFRARFSEITANAVKTACQHLTEPDQRVSDAVEVRQELDLRIGAAFTRFQ 117
Query: 192 TTYFQ 196
T Q
Sbjct: 118 TLRLQ 122
>gi|403213445|emb|CCK67947.1| hypothetical protein KNAG_0A02580 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 17/201 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-----SHAYIKVTSVV 57
+KVL VAEK SIA ++A +L GG +R + T V +D F G + +TSV
Sbjct: 1 MKVLCVAEKNSIAKAVAHILGGGSSTSRGSGYTYVKNYDFQFGGFPFAPGSCQVTMTSVA 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ +DF A W N +LF APV + + I ++ +EAR +L++W DCD
Sbjct: 61 GHLRGMDFDNARYGWGKCNIFELFDAPVSETMDRNQQLIADNIRKEARNVDYLMVWTDCD 120
Query: 118 REGENICFEVIECTGFQVNDAR---RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
REGE I +E+ + Q + R K++RA FS V IL+A + P R + +V+
Sbjct: 121 REGEYIGWEIFQAA--QKGNNRLDESKLYRAVFSHVERGHILQAARS---PQRLDMCSVN 175
Query: 175 A---RQEIDLKVGVAFTRFQT 192
A R E+DL+ GV+FTR T
Sbjct: 176 AVGTRIELDLRTGVSFTRLLT 196
>gi|119579893|gb|EAW59489.1| topoisomerase (DNA) III beta, isoform CRA_b [Homo sapiens]
Length = 516
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%)
Query: 134 QVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTT 193
+ + + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE+DL++G AFTRFQT
Sbjct: 3 KAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTK 62
Query: 194 YFQGKYGNLDSRFISL 209
YFQGKYG+LDS IS
Sbjct: 63 YFQGKYGDLDSSLISF 78
>gi|336273746|ref|XP_003351627.1| TOP3 protein [Sordaria macrospora k-hell]
gi|380095906|emb|CCC05953.1| putative TOP3 protein [Sordaria macrospora k-hell]
Length = 603
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+T+V GH+ +LDF ++ W P LF APV + N I +++ +AR L +
Sbjct: 1 MTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQTSYPNDMKVIAQNIESQARQADILYI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
W DCDREGE+I E+ E +R +V RARFS++ IL A V + +A
Sbjct: 61 WTDCDREGEHIGSEIREA----ARKGKRNIQVFRARFSNIERAHILSAARRPVPLDERQA 116
Query: 171 LAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
AV AR E+DL++G AFTRF T Q G LD +S
Sbjct: 117 EAVAARIELDLRIGSAFTRFLTLSLQRLGGPLDGLVLS 154
>gi|425769433|gb|EKV07926.1| DNA topoisomerase [Penicillium digitatum Pd1]
gi|425771095|gb|EKV09549.1| DNA topoisomerase [Penicillium digitatum PHI26]
Length = 571
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSVVGH+ LDF Y+ W + P LF+APV + K+ I ++ +A+ L +
Sbjct: 1 MTSVVGHLTGLDFDRQYKGWMSCPPGSLFEAPVQEFVDKDKLPIADNIRNQAKYSKALFI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
W DCDREGE+I EV + ++R +V RA+FS+ + +A V + +A A
Sbjct: 61 WTDCDREGEHIGSEV--RSQALAGNSRIEVKRAKFSNTESAHVRRAALAPVNLDEYQASA 118
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
V AR E+DL++G AFTR QT Q L + IS
Sbjct: 119 VAARIELDLRIGAAFTRLQTLQLQTVVAALKEKVIS 154
>gi|258568124|ref|XP_002584806.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906252|gb|EEP80653.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 587
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 35/215 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEVHEFDGMFL----GSHAYIKVTSVVG 58
++L VAEKP+IA ++A LSGG L T + + V ++ F ++ + +TSV+G
Sbjct: 4 RILCVAEKPAIAKAVAQHLSGGALRTASIRGNQYVKNYEFQFAFGPPWGNSSVTMTSVIG 63
Query: 59 HVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
H+ LDF ++ W + P LF APV + + I ++ +AR L +W DCDR
Sbjct: 64 HLTALDFESQWRHWQSCPPGQLFDAPVAEDVDKDNLGIAENIRNKARQADVLFIWTDCDR 123
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
EGE+I EV N A R V + +A AV AR E
Sbjct: 124 EGEHIGSEV-------RNQAVR----------------------VLLDERQAHAVAARIE 154
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSS 213
+DL++G AFTR T G L R IS S
Sbjct: 155 LDLRIGAAFTRLLTLQLGALGGALAERLISYALGS 189
>gi|119719794|ref|YP_920289.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
gi|119524914|gb|ABL78286.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
Length = 631
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEF--DGMFLGSHAYIKVTSVVGHVF 61
K ++VAEK S+A +IA+ L G + R +EF +G G H I V+ GH+
Sbjct: 4 KAVIVAEKNSVARAIASFLGGSSVRRFRVERVPAYEFLWEG---GKHLSIGVS---GHIL 57
Query: 62 RLDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DFP Y W + +P LF PV +++ R L AR ++L LD D EG
Sbjct: 58 DFDFPEEYNKWESVDPRVLFFTNPVLVTREGAYIYV-RALKTLARQTSTVILALDADVEG 116
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E I FEV+ + + + RA FS+VT+ DIL+A L EPN N A AR +D
Sbjct: 117 EAIAFEVMRI--MKSVNPELEFRRAWFSAVTKSDILEAFRKLREPNENLANKAFARMVVD 174
Query: 181 LKVGVAFTRFQT 192
L +G +FTR T
Sbjct: 175 LTIGASFTRILT 186
>gi|170596371|ref|XP_001902741.1| DNA topoisomerase III [Brugia malayi]
gi|158589402|gb|EDP28410.1| DNA topoisomerase III, putative [Brugia malayi]
Length = 718
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 4/151 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GH+ + DFP ++++W + LF V K+ + L +E + LV+
Sbjct: 1 MTSVSGHLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDVRATLIEEIQKSDLLVI 60
Query: 113 WLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
W DCDREGE I EV+ CT QVN V+RARFS +T + +A+ NLV ++
Sbjct: 61 WTDCDREGEAIGAEVVSVCT--QVN-RNLDVYRARFSEITSAAVNRALNNLVRIDQRLVD 117
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
AV+ R E+DL++G AFTR QT + + + ++
Sbjct: 118 AVECRSELDLRIGAAFTRLQTLHLRNNFTSI 148
>gi|50556688|ref|XP_505752.1| YALI0F22495p [Yarrowia lipolytica]
gi|49651622|emb|CAG78563.1| YALI0F22495p [Yarrowia lipolytica CLIB122]
Length = 620
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGM--FLG-SHAYIKVTSVVGHV 60
+KVL VAEKPS+A ++ +L GG A+ V +D F G +TSV+GH+
Sbjct: 1 MKVLCVAEKPSVAKAVCNILGGGFTTRHTANKFVKNYDFQYDFPGWGRCDCTMTSVLGHL 60
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+F N LF P+ ++ +EAR L++W DCDREG
Sbjct: 61 TDSEFVSEDARKFGYNAARLFTEPITTQVKADMRKCADNIVKEARHARKLLIWTDCDREG 120
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E I +E+++ + N +V RA FS + + + +A +L E + N AV AR EID
Sbjct: 121 EYIGWEIVQ-EAIKGN-PNIEVKRAIFSDLEKTHVHQAARSLRELDMNAVNAVAARMEID 178
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+ G AFTR QT + Q K+ L IS
Sbjct: 179 YRTGFAFTRLQTLHIQRKFAQLSKSVIS 206
>gi|315054065|ref|XP_003176407.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
gi|311338253|gb|EFQ97455.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
Length = 168
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTR--KASTEV--HEFDGMF---LGSHAYIKVTSVV 57
K+L VAEKP+IA +A LSGG++ T + S V +EFD F GS + + +TSV+
Sbjct: 4 KILCVAEKPAIAKLVAQHLSGGRIRTSGIEGSQYVKNYEFDFTFGPPWGSCSVV-MTSVL 62
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ DF P Y++WN+ NP LF A V A K+ I +++ ++AR L +W DCD
Sbjct: 63 GHLTASDFEPRYRNWNSCNPSQLFAASVIIAVDKEKLGIAQNIKRQARNSRALFIWTDCD 122
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKA 158
REGE+I EV + + + ++ RA+FS+ +L+A
Sbjct: 123 REGEHIGSEVRDQA--VLGNPSIEIKRAKFSNTERTHVLQA 161
>gi|409722530|ref|ZP_11269978.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|448724451|ref|ZP_21706958.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|445785768|gb|EMA36554.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
Length = 841
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A +IA +LSGG R+ V+++ G + + GHV DF
Sbjct: 3 LIITEKETAARNIADILSGGGADVERRNGVNVYKWGGR--------RCVGLSGHVVENDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y +W P++L A V + +I R L AR +V+ D DREGE I
Sbjct: 55 PPEYANWRDVQPVELIDADVVVEPHESRENIVRTLRLLARDADGVVIATDYDREGELIGK 114
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + V+DA V RARFSS E+++ +A NL + + + A A +ARQEIDL G
Sbjct: 115 EAHDLVR-DVSDA--PVKRARFSSFAEREVKEAFSNLEDLDFDLAAAGEARQEIDLVWGA 171
Query: 186 AFTRF 190
A TRF
Sbjct: 172 ALTRF 176
>gi|452989907|gb|EME89662.1| hypothetical protein MYCFIDRAFT_193524 [Pseudocercospora fijiensis
CIRAD86]
Length = 773
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 51 IKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHL 110
+ +TSV+GH+ DF Y+ WN+ +P LF+A + + K + ++ ++ARG +L
Sbjct: 156 VTMTSVLGHLMMHDFERRYKGWNSCDPGVLFEAQIETFVAEDKKPVADNIERQARGVRYL 215
Query: 111 VLWLDCDREGENICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRN 168
+W DCDREGENI E+ C + N + ++ RARFS++ ++ +L A +
Sbjct: 216 YIWTDCDREGENIGAEIRSC-ALKTNPGLSNGRIVRARFSNIEKQHVLNAARRPGTLDDA 274
Query: 169 EALAVDARQEIDLKVGVAFTR 189
+A AV AR E+DL++G +FTR
Sbjct: 275 QANAVYARMELDLRIGASFTR 295
>gi|385802643|ref|YP_005839043.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
gi|339728135|emb|CCC39257.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
Length = 857
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGDSATADREQGVNVYKWGGK--------RCIGLSGHVVAVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P Y DW P++L AP+ K NP K +I L + AR +++ D DREGE I
Sbjct: 59 PQEYSDWRDVEPIELIDAPIEK---NPTKQNIVTTLKKLARRARRVIIATDYDREGELIG 115
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E E +VN++ + R RFSS+TE+ + A N + + N A A +ARQ IDL G
Sbjct: 116 KEAYELV-RRVNEST-PIDRVRFSSITEESVTTAFENPDDLDFNLAAAGEARQVIDLVWG 173
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L S FIS+
Sbjct: 174 AALTR----YLSLSAGQLGSDFISV 194
>gi|164428822|ref|XP_956391.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
gi|157072295|gb|EAA27155.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
Length = 638
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 51 IKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHL 110
+ +T+V GH+ +LDF ++ W P LF APV + +I +++ +AR L
Sbjct: 25 VTMTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQTVYPHDMKNIAQNIENQARQADIL 84
Query: 111 VLWLDCDREGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRN 168
+W DCDREGE+I E+ E +R +V+RARFS++ IL A V +
Sbjct: 85 YIWTDCDREGEHIGSEIREA----ARKGKRNIQVYRARFSNIERAHILSAARRPVALDDK 140
Query: 169 EALAVDARQEIDLKVGVAFTRFQT 192
+A AV AR E+DL++G AFTRF T
Sbjct: 141 QAEAVAARIELDLRIGSAFTRFLT 164
>gi|110667236|ref|YP_657047.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
gi|109624983|emb|CAJ51396.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
Length = 857
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGDSATADREQGVNVYKWGGK--------RCIGLSGHVVAVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P Y DW P++L AP+ K NP K +I L + AR +++ D DREGE I
Sbjct: 59 PQEYSDWRDVEPVELIDAPIEK---NPTKQNIVTTLKKLARRARRVIIATDYDREGELIG 115
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E E +VN++ + R RFSS+TE+ + A N + + N A A +ARQ IDL G
Sbjct: 116 KEAYELV-RRVNEST-PIDRVRFSSITEESVTTAFENPDDLDFNLAAAGEARQVIDLVWG 173
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L S FIS+
Sbjct: 174 AALTR----YLSLSAGQLGSDFISV 194
>gi|448434802|ref|ZP_21586500.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
gi|445684425|gb|ELZ36801.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
Length = 879
Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERTNDVNVYEWGGK--------RCIGLAGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQKG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA V R RFSS+TE ++ +A N E + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PVDRVRFSSITENEVQEAFANPDELDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|26325928|dbj|BAC26718.1| unnamed protein product [Mus musculus]
Length = 839
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTE 152
+ I + L +E C LV+W DCDREGENI FE+I C + N +V RARFS +T
Sbjct: 12 IDIKKTLERETHHCQALVIWTDCDREGENIGFEIIHVCKAVKPN---LRVLRARFSEITP 68
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
+ A NL EP++ + AVD RQE+DL++G AFTRFQT Q
Sbjct: 69 HAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQ 112
>gi|406701616|gb|EKD04732.1| hypothetical protein A1Q2_00962 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1818
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 45/217 (20%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFD-----GMFLGSHAYIKVTS 55
+KVL VAEKPSIA SI +LS +R++ + ++FD + G VTS
Sbjct: 1 MKVLCVAEKPSIAKSITAILSENNFTSRQSGHQYIRNYDFDYNLPPPLGGGRGTDFTVTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V+GH+ LD + + E+N L EAR L++W D
Sbjct: 61 VLGHLTSLD--------------------MKRVETN--------LKNEARRAQILMIWTD 92
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKA---MGNLVEPNRNEALA 172
CDREGE+I E+ + ++ V RARFS++ I +A GNL E N+A A
Sbjct: 93 CDREGEHIGSEIESVC--RRSNPNITVKRARFSAIIAAQIHQACRQAGNLDE---NQAKA 147
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNL-DSRFIS 208
V+AR E+DL++G AFTRF T Q + L D + +S
Sbjct: 148 VEARTELDLRIGAAFTRFLTQTLQIRVPELGDQKLVS 184
>gi|350290740|gb|EGZ71954.1| prokaryotic type I DNA topoisomerase [Neurospora tetrasperma FGSC
2509]
Length = 654
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 51 IKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHL 110
+ +T+V GH+ +LDF ++ W P LF APV + I +++ +AR L
Sbjct: 46 VTMTAVRGHLTQLDFHQEFKKWEYPPPGRLFDAPVQTIYPHDMKTIAQNIENQARQADIL 105
Query: 111 VLWLDCDREGENICFEVIECTGFQVNDARR--KVHRARFSSVTEKDILKAMGNLVEPNRN 168
+W DCDREGE+I E+ E +R +V+RARFS++ IL A V +
Sbjct: 106 YIWTDCDREGEHIGSEIREA----ARKGKRNIQVYRARFSNIERAHILSAARRPVALDDK 161
Query: 169 EALAVDARQEIDLKVGVAFTRFQT 192
+A AV AR E+DL++G AFTRF T
Sbjct: 162 QAEAVAARIELDLRIGSAFTRFLT 185
>gi|448531338|ref|ZP_21621025.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
gi|445707295|gb|ELZ59153.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
Length = 865
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERTNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA V R RFSS+TE ++ +A N E + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PVDRVRFSSITENEVQEAFANPDELDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|326434142|gb|EGD79712.1| DNA topoisomerase III [Salpingoeca sp. ATCC 50818]
Length = 1137
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
LMVAEKP++A IA +L+ G T+ ++EF G I++T+V GH+
Sbjct: 4 ALMVAEKPAVARGIAGILAPGSTSKSTQAQYVRLYEFQTHINGQMWDIRLTAVCGHLMGW 63
Query: 64 DFPPAYQDWNASNPLDLFQAPVH--------KAESNPKVHICRHLNQEARGCGHLVLWLD 115
DF A++ W +S P LF AP+ ++N K I L + RGC +++ D
Sbjct: 64 DFDDAHRKWRSSPPESLFDAPLQMTSHGGGDNGDNNKK--ILGVLQRHVRGCQMVLIATD 121
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR 167
DREGENI FE+IE + + R R RFS+VT +I ++ NL P++
Sbjct: 122 SDREGENIGFEIIEAC--RKTNKRFIAKRMRFSAVTPAEINNSLRNLTPPDQ 171
>gi|448419687|ref|ZP_21580531.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
gi|445674601|gb|ELZ27138.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
Length = 835
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG S E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-------ESAEAERVNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L AP+ K + V R L++ AR +V+ D DREGE I
Sbjct: 60 PEYNDWRDVEPVELIDAPIDKHPTQENIVAALRRLSRNAR---RVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+T++++ +A N E + N A A +ARQ +DL G
Sbjct: 117 EAYELV-REVNE-EVPVDRVRFSSITQREVTEAFENPDELDFNLAAAGEARQIVDLVWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448725243|ref|ZP_21707711.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
gi|445799346|gb|EMA49726.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
Length = 827
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A +IA +LS G S +V +G+ + + + GHV DFP
Sbjct: 3 LLITEKETAASNIAEILSEG-------SADVERRNGVNVYKWGGRRCVGLSGHVVENDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y +W P++L A V + +I R L AR +++ D DREGE I E
Sbjct: 56 PEYANWRDVEPVELLDADVVVEPHESRENIVRTLRLLARDANGVIIATDYDREGELIGKE 115
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ +V+DA + RARFSS E+++ +A NL + + + A A +ARQEIDL G A
Sbjct: 116 AADIV-REVSDA--PIKRARFSSFAEREVREAFHNLDDLDYDLAAAGEARQEIDLVWGAA 172
Query: 187 FTRF 190
TRF
Sbjct: 173 LTRF 176
>gi|254167954|ref|ZP_04874802.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289596012|ref|YP_003482708.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622997|gb|EDY35564.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289533799|gb|ADD08146.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ +L++AEK + A IA +LSGG+ T +K + F G Y V + GH+
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGRYETIKKGRNAYYSFTK---GKDRYF-VVPLRGHILH 56
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+D+P ++ W+ + L + P+ + +I R L ++A L++ D DREGE
Sbjct: 57 MDYPDKFKRWSLGDLQRLVDEEPIKIIKEKGIANILRTLAKDA---DMLIIATDYDREGE 113
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E + T F + V RA+FS++TE++I A NLV+ N N A A + RQ+IDL
Sbjct: 114 LIGVESLSITNF-----KGPVKRAKFSALTEREIENAFSNLVDVNYNLASAAETRQKIDL 168
Query: 182 KVGVAFTRF 190
G + TRF
Sbjct: 169 AWGASLTRF 177
>gi|448714078|ref|ZP_21702095.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
gi|445788962|gb|EMA39658.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
Length = 827
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 72/204 (35%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PPEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANTVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ + R RFSS+TE ++ A N + + + A A +ARQ IDL G
Sbjct: 113 EAYEIVR-EVNETV-PIRRVRFSSITENEVTDAFENPDDIDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGDDFISV 190
>gi|254168173|ref|ZP_04875020.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622939|gb|EDY35507.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ +L++AEK + A IA +LSGG+ T +K + F G Y V + GH+
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGRYETIKKGRNAYYSFTK---GKDRYF-VVPLRGHILH 56
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
+D+P ++ W+ + L + P+ + +I R L ++A L++ D DREGE
Sbjct: 57 MDYPDEFKRWSLGDLQRLVDEEPIKIIKEKGIANILRTLAKDA---DMLIIATDYDREGE 113
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E + T F + V RA+FS++TE++I A NLV+ N N A A + RQ+IDL
Sbjct: 114 LIGVESLSITNF-----KGPVKRAKFSALTEREIENAFSNLVDVNYNLASAAETRQKIDL 168
Query: 182 KVGVAFTRF 190
G + TRF
Sbjct: 169 AWGASLTRF 177
>gi|429190846|ref|YP_007176524.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|448327153|ref|ZP_21516488.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
gi|429135064|gb|AFZ72075.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|445608936|gb|ELY62752.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
Length = 827
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 72/204 (35%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PPEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANTVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+A + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYEIVR-EVNEA-VPIRRVRFSSITENEVENAFDEPEDLDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGDDFISV 190
>gi|448579765|ref|ZP_21644759.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
gi|445723101|gb|ELZ74751.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
Length = 852
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G++ + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E +VN+ V R RFSS+T++++ +A N E + + A A +ARQ IDL G A
Sbjct: 118 AYELV-REVNED-VPVDRVRFSSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|448589917|ref|ZP_21649976.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
gi|445735032|gb|ELZ86585.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
Length = 855
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G++ + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E +VN+ V R RFSS+T++++ +A N E + + A A +ARQ IDL G A
Sbjct: 118 AYELV-REVNED-VPVDRVRFSSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|73669624|ref|YP_305639.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
gi|72396786|gb|AAZ71059.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
Length = 855
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 14/192 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHV 60
+ ++ AEK A IA++L G++ + + E V+EF + G V + GH+
Sbjct: 1 MTIVAFAEKNKAASQIASILGEGEV--ERITVEGLPVYEFK--WKGEEWL--VMGLSGHI 54
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DFP Y W NP L + K + + + A+ +VL D DREG
Sbjct: 55 MNYDFPEQYNKWKEVNPGVLLEIDPQKLVT--RTDYAAAVKNLAKRANKIVLACDYDREG 112
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
ENI FE N + RARFSS++ K++ KA +L+ P+ N A+A +ARQ +D
Sbjct: 113 ENIGFEAKTLAEKVTNVP---IERARFSSLSPKEVKKAFESLINPDYNMAMAAEARQILD 169
Query: 181 LKVGVAFTRFQT 192
LK+G AFTRF T
Sbjct: 170 LKMGAAFTRFVT 181
>gi|21226285|ref|NP_632207.1| DNA topoisomerase III [Methanosarcina mazei Go1]
gi|20904529|gb|AAM29879.1| DNA topoisomerase III [Methanosarcina mazei Go1]
Length = 832
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ V+ AEK A IA++L G++ K S E + ++ + G V + GH+
Sbjct: 1 MTVVAFAEKNKAAAQIASILGEGEV--DKISVEGLPAYEFKWKGEEWL--VMGLSGHIMN 56
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH-----LNQEARGCGHLVLWLDCD 117
DFP Y W+ +P L +P+ + R + A+ ++L D D
Sbjct: 57 YDFPEKYNKWSEVDPGTLLGV-------DPEKFVTRKEYEAAIKNLAKRADKIILACDYD 109
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENI FE + +V D V RARFS+++ K++ KA N V+P+ N A+A +ARQ
Sbjct: 110 REGENIGFEA-KTLAEEVTDV--PVARARFSALSPKEVRKAFENPVDPDHNLAMAAEARQ 166
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLD 203
+DLK+G AFTRF T + K D
Sbjct: 167 ILDLKMGAAFTRFVTLSVREKARTKD 192
>gi|452208804|ref|YP_007488918.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452098706|gb|AGF95646.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 832
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ V+ AEK A IA++L G++ K S E + ++ + G V + GH+
Sbjct: 1 MTVVAFAEKNKAAAQIASILGEGEV--DKISVEGLPAYEFKWKGEEWL--VMGLSGHIMN 56
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH-----LNQEARGCGHLVLWLDCD 117
DFP Y W+ +P L +P+ + R + A+ ++L D D
Sbjct: 57 YDFPEKYNKWSEVDPGTLLGV-------DPEKFVTRKEYEAAIKNLAKRADKIILACDYD 109
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGENI FE + +V D V RARFS+++ K++ KA N V+P+ N A+A +ARQ
Sbjct: 110 REGENIGFEA-KTLAEEVTDV--PVARARFSALSPKEVRKAFENPVDPDHNLAMAAEARQ 166
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLD 203
+DLK+G AFTRF T + K D
Sbjct: 167 ILDLKMGAAFTRFVTLSVREKARTKD 192
>gi|448510389|ref|ZP_21615890.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|448522099|ref|ZP_21618364.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
gi|445695956|gb|ELZ48052.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|445702373|gb|ELZ54327.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
Length = 865
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + K I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPT--KEGIVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|16081238|ref|NP_393542.1| DNA topoisomerase I [Thermoplasma acidophilum DSM 1728]
gi|14423969|sp|Q9HM08.1|TOP1_THEAC RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|10639209|emb|CAC11211.1| DNA topoisomerase III beta related protein [Thermoplasma
acidophilum]
Length = 770
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+++AEK IA LSGG++ + +A T EF+ + GS Y+ + GH+ DF
Sbjct: 6 IIIAEKADAGRRIAYFLSGGQVKSHRAKGTSYLEFE--YNGSKTYL--IPLSGHIVEADF 61
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARG-CGHLVLWLDCDREGENIC 124
Y DWN + DL A + K N K + Q RG +V+ D DREGE I
Sbjct: 62 ESGYSDWNKIDLSDLIDARIVK---NIKNKVAYQTLQAFRGKVEEIVIATDYDREGELIG 118
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E ++ + + + ++ RA+FS++T+ +IL + NL+ N + A A DAR+ IDL G
Sbjct: 119 VEALDI----IKEGKEEIRRAKFSALTKNEILDSFKNLIGVNYSLADAADARESIDLIWG 174
Query: 185 VAFTRFQTTYFQGKYGNLDSRFIS 208
TRF F G L F+S
Sbjct: 175 SVLTRF----FSVTTGRLGKSFLS 194
>gi|448467207|ref|ZP_21599409.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
gi|445812864|gb|EMA62851.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
Length = 865
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERENDVNVYKWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA + R RFSS+T+ ++ KA N E + + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PIDRVRFSSITDNEVQKAFANPDELDFDLAAAGEARQVIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448444924|ref|ZP_21590071.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
gi|445685679|gb|ELZ38029.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
Length = 864
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERENDVNVYKWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA + R RFSS+TE ++ +A N E + + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PIDRVRFSSITENEVREAFANPDELDFDLAAAGEARQVIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448457005|ref|ZP_21595579.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
gi|445811092|gb|EMA61102.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
Length = 865
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG T R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATTERQNDVNVYKWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA + R RFSS+T+ ++ +A N E + + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PIDRVRFSSITDNEVNEAFANPDELDFDLAAAGEARQVIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|298674695|ref|YP_003726445.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
gi|298287683|gb|ADI73649.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
Length = 772
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 24/203 (11%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEF--DGMFLGSHAYIKVTSVVGHV 60
+ ++ AEK A IA++LS G T V+EF DG ++ + GH+
Sbjct: 1 MSIVAFAEKNKAAAQIASILSEGNFERTTLEGVNVYEFKKDG------KQWRIMGLSGHI 54
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH-----LNQEARGCGHLVLWLD 115
D+P Y +W +P L ++ P+ I + +++ A+ ++L D
Sbjct: 55 MTYDYPQEYNNWKDVDPGVLI-------DTMPEQFITKQAFANAISRLAKDSDEIILACD 107
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
DREGENI FE N + RARFSS++ +I KA N VEP+ N A + A
Sbjct: 108 YDREGENIGFEAKSIAEKVCNSP---IKRARFSSLSTGEIKKAFQNPVEPDVNLANSAKA 164
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
RQ +DLK+GVAFTR+ T Q K
Sbjct: 165 RQILDLKMGVAFTRYITLSVQQK 187
>gi|20090640|ref|NP_616715.1| DNA topoisomerase [Methanosarcina acetivorans C2A]
gi|19915684|gb|AAM05195.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 843
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 10/201 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTE-VHEFDGMFLGSHAYIKVTSVVGHVFR 62
+ V+ AEK A IA++L G++ K S E + ++ + G V + GH+
Sbjct: 1 MTVVAFAEKNKAAAQIASILGDGEV--DKISVEGLPAYEFKWKGEEWL--VMGLSGHIMN 56
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
DFP Y W+ NP L K + + + + A+ ++L D DREGEN
Sbjct: 57 YDFPEQYNKWSEVNPGTLLGVDPEKFVT--RAEYATAIKKLAKRADKIILACDYDREGEN 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I FE + +V D V RARFS+++ K++ KA + V+P+ N A+A + RQ +DLK
Sbjct: 115 IGFEA-KTLAEEVTDV--PVARARFSALSPKEVRKAFESPVDPDHNLAMAAETRQILDLK 171
Query: 183 VGVAFTRFQTTYFQGKYGNLD 203
+G AFTRF T + K D
Sbjct: 172 MGAAFTRFVTLSVREKARTKD 192
>gi|448694566|ref|ZP_21697066.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
gi|445785151|gb|EMA35946.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
Length = 844
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PAEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D +V R RFSS+TE ++ A N E + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEEVPIRRVRFSSITENEVQDAFENPDELDFDLAAAGEARQIIDLIW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G A TRF + G L FIS+
Sbjct: 169 GAALTRFLSL----SAGQLGDDFISV 190
>gi|383622530|ref|ZP_09948936.1| DNA topoisomerase I, partial [Halobiforma lacisalsi AJ5]
Length = 709
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PAEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D +V R RFSS+TE ++ A N E + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEEVPIRRVRFSSITENEVQDAFENPDELDFDLAAAGEARQIIDLIW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G A TRF + G L FIS+
Sbjct: 169 GAALTRFLSL----SAGQLGDDFISV 190
>gi|399575540|ref|ZP_10769298.1| DNA topoisomerase i [Halogranum salarium B-1]
gi|399239808|gb|EJN60734.1| DNA topoisomerase i [Halogranum salarium B-1]
Length = 843
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG S E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIAAILSG-------ESAEAERMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI--- 123
Y DW P++L AP+ K + + +I L + AR G++V+ D DREGE I
Sbjct: 60 AEYNDWRDVEPVELIDAPIDKHPT--QENIVAALRRLARKAGNVVIATDYDREGELIGKE 117
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
+E++ VN + R RFSS+T++++ A N + + + A A +ARQ IDL
Sbjct: 118 AYELVREVNEDVN-----IDRVRFSSITKREVTDAFENPDDLDFDLAAAGEARQVIDLVW 172
Query: 184 GVAFTRF 190
G A TRF
Sbjct: 173 GAALTRF 179
>gi|389846116|ref|YP_006348355.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|448616266|ref|ZP_21664976.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|388243422|gb|AFK18368.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|445750921|gb|EMA02358.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
Length = 855
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G++ + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T++++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITKREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|392892251|ref|NP_001254382.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
gi|371571202|emb|CCF23413.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
Length = 733
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 136 NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYF 195
D V+RA FS++TEKDI AM NL P++N + +VDARQE+DL++G +FTRFQT +F
Sbjct: 6 QDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFF 65
Query: 196 QGKYGNLDSRFIS 208
QGKYG+LDS IS
Sbjct: 66 QGKYGDLDSNVIS 78
>gi|448481877|ref|ZP_21605192.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
gi|445821576|gb|EMA71365.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
Length = 865
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448450586|ref|ZP_21592405.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
gi|445811700|gb|EMA61703.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
Length = 865
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448498502|ref|ZP_21610852.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
gi|445698611|gb|ELZ50652.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
Length = 865
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVREAFANPDDLDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448424865|ref|ZP_21582643.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
gi|445681711|gb|ELZ34140.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
Length = 865
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|345006355|ref|YP_004809208.1| DNA topoisomerase [halophilic archaeon DL31]
gi|344321981|gb|AEN06835.1| DNA topoisomerase [halophilic archaeon DL31]
Length = 871
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+V EK + A IA +LS G + + +G+ + +V + GHV +DFP
Sbjct: 3 LIVTEKDNAARRIADILSDG-------TADAERVNGVNVYGWGGKRVIGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P +L APV + + I L + A+ +++ D DREGE I E
Sbjct: 56 PEYDDWRNVEPHELIDAPVDTQAT--QEGIVAALRRLAKDANRVIIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ VN+ V RARFSS+T++++ A N E + N A A +ARQ +DL G A
Sbjct: 114 AFDLV-RDVNETI-PVERARFSSITDREVHNAFDNTGEIDFNLAAAGEARQIVDLVWGAA 171
Query: 187 FTRFQTTYFQGKYGNLDSRFISL 209
TRF + G L FIS+
Sbjct: 172 LTRFLSL----SAGQLGDDFISV 190
>gi|448476502|ref|ZP_21603588.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
gi|445815365|gb|EMA65290.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
Length = 878
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERQNDVNVYKWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA + R RFSS+T+ ++ +A N E + + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PIDRVRFSSITDNEVQEAFANPDELDFDLAAAGEARQVIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|448613477|ref|ZP_21663357.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
gi|445740374|gb|ELZ91880.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
Length = 840
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG + +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-------ETATAERMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G++ + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T +++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|16554466|ref|NP_444190.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
gi|169235326|ref|YP_001688526.1| DNA topoisomerase I [Halobacterium salinarum R1]
gi|167726392|emb|CAP13175.1| DNA topoisomerase I [Halobacterium salinarum R1]
Length = 829
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+V EK + A IA +LS GG T+ A V+E+ G + + GHV +DF
Sbjct: 3 LIVTEKNNAARRIADILSEGGASTTQTAGVNVYEWGGR--------RCIGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P +L A V K + I L + AR +V+ D DREGE I
Sbjct: 55 PPEYNDWRDVEPAELIHADVVKDPTQED--IVNALQRLAREADDVVIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ + V+R RFSS+T+ ++ A + + + + A A +ARQ +DL G
Sbjct: 113 EAYELVR-EVNE-QAPVNRVRFSSITDTEVRSAFADPDDIDFDLAAAGEARQIVDLMWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
+ TRF + G + FIS+
Sbjct: 171 SLTRFLSL----SAGQMGEDFISV 190
>gi|335438421|ref|ZP_08561165.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
gi|334892042|gb|EGM30286.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
Length = 844
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+V EK + A IA +LSG R+ V+ + G +V + GHV LDF
Sbjct: 3 LIVTEKDNAARRIAEILSGDSASAERRNGVNVYRWGGQ--------RVVGLSGHVVGLDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y +W P++L A V + +I L+ AR +V+ D DREGE I
Sbjct: 55 PPEYSEWRDVEPIELIDADV--VTQPTRENIVATLHSLARKADEVVIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + DA V R RFSS+T++++ KA N E + + A A +ARQ +DL G
Sbjct: 113 EAYELIR-EETDA--PVERVRFSSITDREVQKAFENPDEIDFDLAAAGEARQIVDLIWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448492196|ref|ZP_21608790.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
gi|445691655|gb|ELZ43839.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
Length = 865
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R V+E+ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERMNDVNVYEWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L APV K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E +VN+ V R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 117 EAYELVR-EVNE-DVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQIIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|345285958|gb|AEN79294.1| DNA topoisomerase 3-beta-1 [Acanthisitta chloris]
gi|345285996|gb|AEN79313.1| DNA topoisomerase 3-beta-1 [Apus apus]
Length = 63
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/55 (74%), Positives = 46/55 (83%)
Query: 155 ILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
I AM +L EPNRNEAL+VDARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 1 ICNAMNHLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 55
>gi|448397774|ref|ZP_21569807.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
gi|445672873|gb|ELZ25444.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
Length = 826
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PPEYSDWRDVEPVELIDASVEKTPT--KENIVATLRLLARRAERVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ +A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--RGVDEDVPIRRVRFSSITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGEDFISV 190
>gi|448374321|ref|ZP_21558206.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
gi|445660998|gb|ELZ13793.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
Length = 832
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLY-TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG + TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGESMQSTRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PPEYGDWRDVEPVELIDASVEKRPT--KENIVATLRLLARRAEQVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + D + R RFSS+TE ++ +A + + A A +ARQ IDL G
Sbjct: 113 EAYEIV--RDVDEDVPIRRVRFSSITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
+ TRF + G L + FIS+
Sbjct: 171 SLTRFLSL----SAGQLGNDFISV 190
>gi|222478697|ref|YP_002564934.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222451599|gb|ACM55864.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 864
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG R+ V+++ G + + GHV +DF
Sbjct: 7 LIITEKDNAARRIADILSGESATAERENDVNVYKWGGK--------RCIGLSGHVVGVDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L AP+ K + I L + AR +V+ D DREGE I
Sbjct: 59 PAEYNDWRDVEPVELIDAPITKEPTQEG--IVAALRKLARNASRVVIATDYDREGELIGK 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E DA + R RFSS+T+ ++ +A N E + + A A +ARQ IDL G
Sbjct: 117 EAYELVREVNEDA--PIDRVRFSSITDNEVNEAFANPDELDFDLAAAGEARQVIDLTWGA 174
Query: 186 AFTRF 190
A TRF
Sbjct: 175 ALTRF 179
>gi|402585917|gb|EJW79856.1| hypothetical protein WUBG_09237, partial [Wuchereria bancrofti]
Length = 101
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVV 57
MAPL V+MVAEKP +A SIA +L+ GK+ RK V E+ G+F G A KVTS
Sbjct: 1 MAPLTVMMVAEKPMLAESIAKILADGKVEKRKGWNNVCSVSEYCGLFQGQSAIFKVTSTC 60
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHI 96
GH+ LDFP +W +P+ LF + K E+NPK+ +
Sbjct: 61 GHIMSLDFPSKMNNWEKVDPVMLFSSSTAKKEANPKMRM 99
>gi|448319100|ref|ZP_21508606.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
gi|445596714|gb|ELY50798.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
Length = 842
Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 71/204 (34%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSTRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K I L AR + + D DREGE I
Sbjct: 55 PAEYSDWRDVEPVELIDAEVEKTAT--KEDIVATLRILARRAERVAIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + DA + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDADVPIRRVRFSSITENEVKSAFEEPDELDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGDDFISV 190
>gi|322369955|ref|ZP_08044517.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
gi|320550291|gb|EFW91943.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
Length = 858
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG S E +G+ + + + GHV +DFP
Sbjct: 3 LIITEKDNAARRIADILSG-------ESAEADRQNGVNVYKWGGKRCIGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L A V K + K +I R L AR + + D DREGE I E
Sbjct: 56 PEYNDWRDVEPVELIDASVEKQPT--KENIVRTLRLLARDASRVTIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E +VN+ + R RFSS+T+ ++ A N E + + A A +ARQ IDL G A
Sbjct: 114 AWELVR-EVNE-DVPIQRVRFSSITKNEVSSAFENPDELDFDLAAAGEARQIIDLIWGAA 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|52549025|gb|AAU82874.1| DNA topoisomerase I [uncultured archaeon GZfos21B5]
Length = 681
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 8 MVAEKPSIALSIATVLSGGKLYTRKAST-EVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
++ EK + A IA +LS GK +K + HEFD V + GHVFRLDFP
Sbjct: 4 IITEKGTTAKKIAAILSNGKAKKKKIGGIDAHEFDEKV--------VIGLSGHVFRLDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+Y +W+ +P L A + K I + L Q A+ ++ + D DREGE I E
Sbjct: 56 DSYNNWSKVDPYKLIDAKI--VTVALKKDIVKTLGQIAKKADYITVATDYDREGELIGVE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ + + KV R R+S++TEKDI + E + N A + + RQ IDL G +
Sbjct: 114 AL--NSIKKINPELKVDRMRYSAITEKDIKDSFAARSEVDYNLAASAEVRQIIDLVWGAS 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|268325082|emb|CBH38670.1| DNA topoisomerase I [uncultured archaeon]
Length = 681
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 8 MVAEKPSIALSIATVLSGGKLYTRKAST-EVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
++ EK + A IA +LS GK +K + HEFD V + GHVFRLDFP
Sbjct: 4 IITEKGTTAKKIAAILSNGKAKKKKIGGIDAHEFDEKV--------VIGLSGHVFRLDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+Y +W+ +P L A + K I + L Q A+ ++ + D DREGE I E
Sbjct: 56 DSYNNWSKVDPYKLIDAKI--VTVALKKDIVKTLGQIAKKADYITVATDYDREGELIGVE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ + + KV R R+S++TEKDI + E + N A + + RQ IDL G +
Sbjct: 114 AL--NNIKKINPELKVDRMRYSAITEKDIKDSFAARSEVDYNLAASAEVRQIIDLVWGAS 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|448359807|ref|ZP_21548456.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
gi|445641874|gb|ELY94946.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
Length = 826
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D +HR RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDI--VREVDEEVPIHRVRFSSITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|302497864|ref|XP_003010931.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
gi|291174477|gb|EFE30291.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
Length = 563
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ +F P Y+ W + +P LF AP+ S+ + ++ + AR L +
Sbjct: 1 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDAPIEVFVSSDSQPVADNIKRHARRADVLFI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNE 169
W DCDREGE+I E I Q N A + RARFS++ I+ A V + +
Sbjct: 61 WTDCDREGEHIGTE-IRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQ 119
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
A AV +R E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 120 ADAVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLIS 162
>gi|336255063|ref|YP_004598170.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
gi|335339052|gb|AEH38291.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
Length = 826
Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 72/206 (34%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P +L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PDEYSDWRDVEPAELIDADVEKTAT--KENIVATLRIFARKATSVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D V R RFSS+TE ++ +A N + + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEDVPIRRVRFSSITENEVQEAFENPDDLDFDLAAAGEARQIIDLVW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G A TRF + G L + FIS+
Sbjct: 169 GAALTRFLSL----SAGQLGNDFISV 190
>gi|433638091|ref|YP_007283851.1| topoisomerase IA [Halovivax ruber XH-70]
gi|433289895|gb|AGB15718.1| topoisomerase IA [Halovivax ruber XH-70]
Length = 854
Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLY-TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSG + TR+ V+E+ G + + GHV +DF
Sbjct: 25 LIITEKDNAARRIADILSGESMQSTRENGVNVYEWGGT--------RCVGLSGHVVGVDF 76
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 77 PPEYGDWRDVEPVELIDASVEKRPT--KENIVATLRLLSRRAEQVTIATDYDREGELIGK 134
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + D + R RFSS+TE ++ +A + + A A +ARQ IDL G
Sbjct: 135 EAYEIV--RDVDEDVPIRRVRFSSITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWGA 192
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
+ TRF + G L + FIS+
Sbjct: 193 SLTRFLSL----SAGQLGNDFISV 212
>gi|414886208|tpg|DAA62222.1| TPA: hypothetical protein ZEAMMB73_837809 [Zea mays]
Length = 374
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 46/50 (92%)
Query: 159 MGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
M NLV PN++E+L+VDARQEIDLKVGVAFTRFQT YFQGKYGNLDSR IS
Sbjct: 1 MDNLVLPNKDESLSVDARQEIDLKVGVAFTRFQTRYFQGKYGNLDSRVIS 50
>gi|169622904|ref|XP_001804860.1| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
gi|160704874|gb|EAT77869.2| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
Length = 681
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 30/187 (16%)
Query: 38 HEFDGMFLG-SHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKA-------- 88
++FD F + + T V GH+ DFP ++ W++ P DLF AP+ +
Sbjct: 19 YKFDFRFQQWGQSNVTFTCVAGHIVAQDFPDRFRKWHSCQPADLFDAPIQSSIAEVRTNA 78
Query: 89 ---------ESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDAR 139
++ K + ++ +AR L +W DCDREGE+I E+ + +VN
Sbjct: 79 RVPASSLTDKTQDKKIVASNIEAQARYASILFIWTDCDREGEHIGTEIRDI-ALKVN-PN 136
Query: 140 RKVHRARFSSVTE----------KDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTR 189
+V+RARFS++ +++A N + + +A AV AR E+DL++G AFTR
Sbjct: 137 MQVYRARFSNIERAWVILFPVDFNHVIQASQNPIRLDEAQANAVSARIELDLRLGAAFTR 196
Query: 190 FQTTYFQ 196
QT Q
Sbjct: 197 MQTMALQ 203
>gi|224013088|ref|XP_002295196.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969158|gb|EED87500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1417
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 3 PLKVLMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEF-----DGMFLGSHAYIKVTSV 56
P+ V+ +AEKPSIA ++A LS GG + +EF + S +VTSV
Sbjct: 642 PIVVVHIAEKPSIAQAVAQGLSDGGDTKSGGKGLPTYEFTNPPFNKAPQASKVTHRVTSV 701
Query: 57 VGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
GHVF +DFP YQ W++ +P +LF APV + K + RHL A+G +VLW+DC
Sbjct: 702 AGHVFNVDFPSEYQSWDSVDPAELFHAPVVRKPC--KGSVVRHLQDVAKGVDFIVLWMDC 759
Query: 117 DR 118
DR
Sbjct: 760 DR 761
>gi|448365799|ref|ZP_21554053.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
gi|445654408|gb|ELZ07259.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
Length = 826
Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A I+ +LSGG TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGVNVYEWGGT--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATQVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + +V+D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIVR-EVDD-EVPIRRVRFSSITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|435845938|ref|YP_007308188.1| DNA topoisomerase I [Natronococcus occultus SP4]
gi|433672206|gb|AGB36398.1| DNA topoisomerase I [Natronococcus occultus SP4]
Length = 842
Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGSYDSTRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDADIEKTAT--KENIVATLRILARRAERVAIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEDVPIRRVRFSSITENEVKNAFDEPDELDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|261191759|ref|XP_002622287.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239589603|gb|EEQ72246.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 649
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 38 HEFDGMFLG-SHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHI 96
+EFD F H + +TSV+GH+ +F P Y+ W + +P LF A + + I
Sbjct: 16 YEFDYTFRQWGHCSVTMTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPI 75
Query: 97 CRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVH---RARFSSVTEK 153
++ + AR G L +W DCDREGE+I E I Q N A + RA FS++
Sbjct: 76 ADNIKRHARRAGVLFIWTDCDREGEHIGTE-IRSVAAQSNQALGRAGGTVRAHFSNIERT 134
Query: 154 DILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
I+ A + + +A AV +R E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 135 HIIHAAHRPADLDEAQANAVASRIELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLIS 193
>gi|194388136|dbj|BAG65452.1| unnamed protein product [Homo sapiens]
Length = 132
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+ Q A G V C
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLPQASVCTQAAPG----VRLHPCPPAAA 119
Query: 122 NICFEVIEC 130
+ V+ C
Sbjct: 120 RVADRVVPC 128
>gi|401881458|gb|EJT45758.1| DNA topoisomerase 3-beta [Trichosporon asahii var. asahii CBS 2479]
Length = 1049
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 102/216 (47%), Gaps = 57/216 (26%)
Query: 2 APLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEV---HEFD-----GMFLGSHAYIKV 53
A +KVL VAEKPSIA SI +LS +R++ + ++FD + G V
Sbjct: 230 ARMKVLCVAEKPSIAKSITAILSENNFTSRQSGHQYIRNYDFDYNLPPPLGGGRGTDFTV 289
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
TSV+GH+ LD + + E+N L EAR L++W
Sbjct: 290 TSVLGHLTSLD--------------------MKRVETN--------LKSEARRAQILMIW 321
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
DCDREGE+I E+ T Q++ A R+ GNL E N+A AV
Sbjct: 322 TDCDREGEHIGSEIESLTLSQIHQACRQA-----------------GNLDE---NQAKAV 361
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNL-DSRFIS 208
+AR E+DL++G AFTRF T Q + L D + +S
Sbjct: 362 EARTELDLRIGAAFTRFLTQTLQIRVPELGDQKLVS 397
>gi|448648053|ref|ZP_21679531.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
gi|445775923|gb|EMA26918.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
Length = 1364
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LS GG R+ V+ + +V + GHV +DF
Sbjct: 3 LIITEKDNAARRIAEILSEGGASANRRNGVNVYRW--------GNTRVVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + + +I L Q AR + D DREGE I
Sbjct: 55 PEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G
Sbjct: 113 EAYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|55378414|ref|YP_136265.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
gi|55231139|gb|AAV46558.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
Length = 1364
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LS GG R+ V+ + +V + GHV +DF
Sbjct: 3 LIITEKDNAARRIAEILSEGGASANRRNGVNVYRW--------GNTRVVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + + +I L Q AR + D DREGE I
Sbjct: 55 PEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G
Sbjct: 113 EAYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448355410|ref|ZP_21544162.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
gi|445635563|gb|ELY88731.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
Length = 843
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEEVPIRRVRFSSITENEVQDAFAEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448737373|ref|ZP_21719414.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
gi|445803833|gb|EMA54109.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
Length = 827
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A +IAT+LS G S +V +G+ + + + GHV DFP
Sbjct: 3 LLITEKETAASNIATILSEG-------SADVERRNGVNVYKWGGRRCVGLSGHVVENDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y +W P++L A V + +I R L AR +++ D DREGE I E
Sbjct: 56 PEYANWRDVEPVELLDADVVVEPHESRENIVRTLRLLARDADGVIIATDYDREGELIGKE 115
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ +V+DA + RARFSS E+++ +A NL + + + A A +ARQEIDL G A
Sbjct: 116 AADIV-REVSDA--PIKRARFSSFAEREVREAFDNLDDLDYDLAAAGEARQEIDLVWGAA 172
Query: 187 FTRF 190
TRF
Sbjct: 173 LTRF 176
>gi|448637090|ref|ZP_21675466.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
gi|445764637|gb|EMA15781.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
Length = 1364
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LS GG R+ V+ + +V + GHV +DF
Sbjct: 3 LIITEKDNAARRIAEILSEGGASANRRNGVNVYRW--------GDTRVVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + + +I L Q AR + D DREGE I
Sbjct: 55 PEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G
Sbjct: 113 EAYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|27882184|gb|AAH43953.1| MGC53016 protein, partial [Xenopus laevis]
Length = 698
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 45/54 (83%)
Query: 156 LKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L AM L EPN+NEAL+VDARQE+DL++G AFTRFQT YFQGKYGNLDS IS
Sbjct: 1 LNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISF 54
>gi|302658516|ref|XP_003020961.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
gi|291184833|gb|EFE40343.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
Length = 573
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ +F P Y+ W + +P LF AP+ S+ + ++ + AR L +
Sbjct: 1 MTSVLGHLLGHEFEPRYKSWTSCDPSALFDAPIEVFVSSDGEPVADNIKRHARRADVLFI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNE 169
W DCDREGE+I E I Q N A + RARFS++ I+ A V + +
Sbjct: 61 WTDCDREGEHIGTE-IRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQ 119
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
A AV +R E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 120 ADAVASRIELDLRVGASFTRHLTLSLRPLLQRGNLSEASQLIS 162
>gi|284164738|ref|YP_003403017.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
gi|284014393|gb|ADB60344.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
Length = 827
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PDEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILARKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A + + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--RDVDEEVPIRRVRFSSITENEVQSAFDDPDDLDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448310602|ref|ZP_21500418.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
gi|445607749|gb|ELY61625.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
Length = 827
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 71/206 (34%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTHDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDAEVEKTAT--KENIVATLRILARKAERVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D V R RFSS+TE ++ A + + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEDVPIRRVRFSSITENEVQSAFDEPEDLDFDLAAAGEARQIIDLVW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G A TRF + G L + FIS+
Sbjct: 169 GAALTRFLSL----SAGQLGNDFISV 190
>gi|448363205|ref|ZP_21551808.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
gi|445647174|gb|ELZ00154.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
Length = 826
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A I+ +LSGG TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGVNVYEWGGT--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + +V+D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV-HEVDD-EVPIRRVRFSSITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|289582117|ref|YP_003480583.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|448282469|ref|ZP_21473755.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
gi|289531670|gb|ADD06021.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|445576011|gb|ELY30470.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
Length = 843
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEEVPIRRVRFSSITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448349641|ref|ZP_21538473.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
gi|445639434|gb|ELY92545.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
Length = 801
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A I+ +LSGG TR+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGVNVYEWGGT--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATQVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + +V+D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV-REVDDGV-PIRRVRFSSITETEVKNAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448395862|ref|ZP_21568956.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
gi|445660443|gb|ELZ13239.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
Length = 826
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PDEYSDWRDVEPVELIDANVEKTAT--KENIVATLRILARKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A + + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--RDVDEEVPIRRVRFSSITENEVQSAFDDPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448412916|ref|ZP_21576807.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
gi|445667618|gb|ELZ20259.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
Length = 863
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGK-LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG T++ V+E+ + GHV +DF
Sbjct: 3 LIITEKNNAARRIAEILSGGSATTTQRNGVNVYEW--------GLTTCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K+ + +I R L Q AR + D DREGE I
Sbjct: 55 PEEYSDWRDVEPVELIDADIVKSPTQE--NIVRTLRQLAREADEATIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + DA V R RFSS+TE+++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYELIR-EETDA--PVKRVRFSSITEREVKSAFDEPDDIDFDLAAAGEARQVIDLVWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448630882|ref|ZP_21673337.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
gi|445755256|gb|EMA06646.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
Length = 827
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LS GG R+ V+ + +V + GHV +DF
Sbjct: 3 LIITEKDNAARRIAEILSEGGASANRQNGVNVYRW--------GDTRVVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + + +I L Q AR + D DREGE I
Sbjct: 55 PKEYNDWRDVEPVELIDADVTKEPT--QENIVATLKQLAREADEATIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G
Sbjct: 113 EAYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448305271|ref|ZP_21495203.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
gi|445589118|gb|ELY43354.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
Length = 828
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 97/206 (47%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P +L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPAELIDADVEKTAT--KENIVATLRILARKATQVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D V R RFSS+TE ++ A E + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEDVPIQRVRFSSITENEVKSAFDEPDELDFDLAAAGEARQIIDLIW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G + TRF + G L + FIS+
Sbjct: 169 GASLTRFLSL----SAGQLGNDFISV 190
>gi|300711966|ref|YP_003737780.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|448295656|ref|ZP_21485720.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
gi|299125649|gb|ADJ15988.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|445583755|gb|ELY38084.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
Length = 853
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG S EV +G+ + + + GHV +DFP
Sbjct: 3 LIITEKDNAARRIAAILSG-------ESAEVERQNGVNVYRWGGKRCIGLSGHVVAVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y DW P++L A V K + +I R + AR + + D DREGE I E
Sbjct: 56 SEYSDWRDVEPVELIGAAVEKTPTQE--NIVRTVRLLARDANRVTIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E VND ++ R RFSS+T+ ++ A + E + + A A +ARQ IDL G A
Sbjct: 114 AYEIVR-DVNDGA-EIDRVRFSSITDGEVHSAFDDPDEIDFDLAAAGEARQIIDLVWGAA 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|448344818|ref|ZP_21533720.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
gi|445636924|gb|ELY90081.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
Length = 1378
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDI--VRNVDEDVPIRRVRFSSITENEVQNAFDEPDELDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L FIS+
Sbjct: 171 ALTR----YLSLSAGQLGDDFISV 190
>gi|448319986|ref|ZP_21509474.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
gi|445606392|gb|ELY60296.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
Length = 827
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A + K + K +I L +R + + D DREGE I
Sbjct: 55 PAEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRRAERVAIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEDVPIRRVRFSSITENEVQNAFNEPDELDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|448301636|ref|ZP_21491627.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
gi|445583552|gb|ELY37882.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
Length = 847
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSREKGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--RDVDEEVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L + FIS+
Sbjct: 171 ALTRFLSL----SAGQLGNDFISV 190
>gi|85001333|ref|XP_955385.1| DNA topoisomerase iii [Theileria annulata strain Ankara]
gi|65303531|emb|CAI75909.1| DNA topoisomerase iii, putative [Theileria annulata]
Length = 607
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 32/213 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGG---KLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
L VL VAEKPS+A +I +LS G + T + V+ F F G+ + TSV GH+
Sbjct: 2 LNVLNVAEKPSVAKNITEILSCGNATRELTHSKTNPVYSFPHWFEGNMCKMYFTSVKGHL 61
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLN---QEARGCGHLVLWLDCD 117
LDF Y+ W+ + +DLF ++ +HI + R G+ +
Sbjct: 62 MNLDFDQPYRSWHRTAIIDLFTGKFYQ-----DLHIMSSTHSPIHHERLQGYRKKHIKIR 116
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVT----------EKDILKAMGNLVEPNR 167
+ +CF V + V RA FSSVT E DI A NL +PN+
Sbjct: 117 KNVLEVCFRV---------NKNMIVKRAIFSSVTSQFSFHYWNSESDIEHACVNLKQPNK 167
Query: 168 NEAL--AVDARQEIDLKVGVAFTRFQTTYFQGK 198
N A AV+ RQEIDL++G A TR+ T ++ +
Sbjct: 168 NLANVGAVETRQEIDLRIGSAITRYLTLKYKTQ 200
>gi|344212444|ref|YP_004796764.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
gi|343783799|gb|AEM57776.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
Length = 841
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LS G S +G+ + +V + GHV +DFP
Sbjct: 3 LIITEKDNAARRIAEILSEG-------SASASRQNGVNVYRWGNTRVVGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y DW P++L A V K + + +I L Q AR + D DREGE I E
Sbjct: 56 EEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G A
Sbjct: 114 AYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|290559067|gb|EFD92440.1| DNA topoisomerase I [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 263
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK + A +IA L+ K+ T++ V + G A V + GH+ + +P
Sbjct: 3 LIIAEKSTAAETIAKNLAETKIRTQEFGP-VKVWFTKINGEDAT--VIPLKGHIKNVKYP 59
Query: 67 PAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
++ WN + + A V+ + + + + ++ G +++ D D EGE+I F
Sbjct: 60 DTFKKWNEETLMKMVDSALVYAPSAEENIEVIKKFSE---GADKVIIATDYDTEGESIGF 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E I+ + A K++R+ FSS+T K++ +A NL +PN+N + + DAR+EIDL +G
Sbjct: 117 EAIDVVKSKNKTA--KIYRSVFSSLTTKELSEAFNNLQKPNKNLSDSADARREIDLILGA 174
Query: 186 AFTRF 190
TRF
Sbjct: 175 VLTRF 179
>gi|448306300|ref|ZP_21496208.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
gi|445598359|gb|ELY52418.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
Length = 828
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 70/206 (33%), Positives = 97/206 (47%), Gaps = 21/206 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P +L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPAELIDADVEKTAT--KENIVATLRILSRKATRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E E V D V R RFSS+TE ++ A E + + A A +ARQ IDL
Sbjct: 113 EAYEI----VRDVNEDVPIQRVRFSSITENEVQSAFDEPDELDFDLAAAGEARQIIDLIW 168
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G + TRF + G L + FIS+
Sbjct: 169 GASLTRFLSL----SAGQLGNDFISV 190
>gi|159040701|ref|YP_001539953.1| DNA topoisomerase type IA central domain-containing protein
[Caldivirga maquilingensis IC-167]
gi|157919536|gb|ABW00963.1| DNA topoisomerase type IA central domain protein [Caldivirga
maquilingensis IC-167]
Length = 610
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+VAEK S+A +IA L+ G R+ F F + Y + GH+ DF
Sbjct: 4 LIVAEKNSVAKAIAQYLAEGGYTLRRIGIVPVYF---FKVNGEYWASMGLRGHILDFDFE 60
Query: 67 PAYQDWNASNP---LDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
+Y +WN P LDL V + P V L+++AR ++L LD D EGE I
Sbjct: 61 HSYNNWNRVEPGKLLDLEPVMVIRGWDRPYVTALVELSKQAR---EIILALDSDVEGEAI 117
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
+EV+ T + R RA FS+VT DI +A L N N A V R IDLK
Sbjct: 118 AYEVMLVTRLRKPTLR--FRRALFSAVTRDDIRRAFSKLTTINVNLARKVFTRMVIDLKY 175
Query: 184 GVAFTRFQT 192
G FTR T
Sbjct: 176 GATFTRLLT 184
>gi|448685228|ref|ZP_21693220.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
gi|445781839|gb|EMA32690.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
Length = 827
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LS G S +G+ + +V + GHV +DFP
Sbjct: 3 LIITEKDNAARRIAEILSEG-------SASASRQNGVNVYRWGNTRVVGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y DW P++L A V K + + +I L Q AR + D DREGE I E
Sbjct: 56 EEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G A
Sbjct: 114 AYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|448328025|ref|ZP_21517341.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
gi|445616620|gb|ELY70240.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
Length = 826
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L +R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRLLSRRANRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A E + + A A +ARQ IDL G
Sbjct: 113 EAYDI--VRNVDEDVPIRRVRFSSITENEVQSAFDEPDELDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L + FIS+
Sbjct: 171 ALTR----YLSLSAGQLGNDFISV 190
>gi|257053792|ref|YP_003131625.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
gi|256692555|gb|ACV12892.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
Length = 844
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLY-TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+V EK + A IA +LS R+ V+++ G +V + GHV +DF
Sbjct: 3 LIVTEKDNAARRIAEILSDDSASGERRNGVNVYKWGGQ--------RVVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y +W P +L A V + + +I L AR +V+ D DREGE I
Sbjct: 55 PPEYAEWRDVEPAELIDADV--VTTPTRENIVATLRSLARKADEVVIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + DA V R RFSS+TE+++ KA N E + + A A +ARQ +DL G
Sbjct: 113 EAYELIR-EETDA--PVERVRFSSITEREVQKAFENPDEIDFDLAAAGEARQIVDLIWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|354611994|ref|ZP_09029946.1| DNA topoisomerase [Halobacterium sp. DL1]
gi|353191572|gb|EHB57078.1| DNA topoisomerase [Halobacterium sp. DL1]
Length = 828
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+V EK + A IA +LS GG A V+E+ G + + GHV +DF
Sbjct: 3 LIVTEKNNAARRIADILSEGGASTDTYAGVNVYEWGGR--------RCIGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P +L A V K + I L + AR +++ D DREGE I
Sbjct: 55 PPEYSDWRDVEPAELVHADVVKEPTQED--IVNALQRLAREADSVIIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + + V R RFSS+T+ ++ A N E + + A A +ARQ IDL G
Sbjct: 113 EAFELV--RAVNEEAPVKR-RFSSITDNEVRSAFANPDEIDFDLAAAGEARQTIDLMWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448561113|ref|ZP_21634465.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
gi|445721345|gb|ELZ73013.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
Length = 840
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGTVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T++++ +A N + + N A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITKREVTEAFDNPDDLDFNLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|448671391|ref|ZP_21687330.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
gi|445765994|gb|EMA17131.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
Length = 838
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LS G S +G+ + +V + GHV +DFP
Sbjct: 3 LIITEKDNAARRIAEILSEG-------SASASRQNGVNVYRWGNTRVVGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y DW P++L A V K + + +I L Q AR + D DREGE I E
Sbjct: 56 EEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G A
Sbjct: 114 AYELIREETD---APVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|448624140|ref|ZP_21670213.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
gi|445750107|gb|EMA01546.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
Length = 840
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T++++ +A N + + N A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|397775425|ref|YP_006542971.1| DNA topoisomerase [Natrinema sp. J7-2]
gi|397684518|gb|AFO58895.1| DNA topoisomerase [Natrinema sp. J7-2]
Length = 826
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELINADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + +D + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIVRNVDDDV--PIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L FIS+
Sbjct: 171 ALTR----YLSLSAGQLGDDFISV 190
>gi|448681338|ref|ZP_21691471.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
gi|445767871|gb|EMA18964.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
Length = 827
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LS G S +G+ + +V + GHV +DFP
Sbjct: 3 LIITEKDNAARRIAEILSEG-------SASASRQNGVNVYRWGNTRVVGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y DW P++L A V K + + +I L Q AR + D DREGE I E
Sbjct: 56 EEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E + + V R RFSS+TE+++ A N + + + A A +ARQ IDL G A
Sbjct: 114 AYELIREETD---VPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|448343257|ref|ZP_21532197.1| DNA topoisomerase I [Natrinema gari JCM 14663]
gi|445623652|gb|ELY77052.1| DNA topoisomerase I [Natrinema gari JCM 14663]
Length = 826
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + +D + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIVRNVDDDV--PIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L FIS+
Sbjct: 171 ALTR----YLSLSAGQLGDDFISV 190
>gi|403304311|ref|XP_003942748.1| PREDICTED: DNA topoisomerase 3-beta-1 [Saimiri boliviensis
boliviensis]
Length = 838
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 6/89 (6%)
Query: 69 YQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEV 127
Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGENICFEV
Sbjct: 108 YNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEV 167
Query: 128 IECTGFQVND----ARRKVHRARFSSVTE 152
++ GF V + + V RAR S T+
Sbjct: 168 LD-AGFPVMEKAYGGEKTVFRARTLSSTK 195
>gi|76801263|ref|YP_326271.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
gi|76557128|emb|CAI48702.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
Length = 832
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+V EK + A IA +LS G ASTE +G+ + + + GHV +DFP
Sbjct: 3 LIVTEKDNAARRIAEILSDGS-----ASTERR--NGVNVYRWGDKRCVGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y+DW P++L +A V K + + +I R L Q A + D DREGE I E
Sbjct: 56 PEYEDWRDVQPVELVEADVVKKPT--QENIVRTLKQLAGEADRATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E +A + R RFSS+TE ++ +A + + + A A +ARQ +DL G A
Sbjct: 114 AYELI---REEADIPIQRVRFSSITENEVKEAFATPDDLDFDLAAAGEARQIVDLLWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|164657941|ref|XP_001730096.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
gi|159103991|gb|EDP42882.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
Length = 694
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRK--VHRARFSSVTEK 153
I R+L EAR L++W DCDREGE I FE+ + A+R+ V RARFS+V
Sbjct: 7 IARNLTIEARSTDMLIIWTDCDREGEAIGFEIAQ----HCQKAQRRLIVKRARFSAVIAD 62
Query: 154 DILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
I A NLV+ + + AVDARQE+DL+ G AFTR QT G LDS +S
Sbjct: 63 QIHHACMNLVDLDLHAVDAVDARQEVDLRAGAAFTRLQTMRL-GPLLKLDSMLLS 116
>gi|365759377|gb|EHN01167.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 601
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV GH+ +DF W +LF AP+ + +N + I ++ +EA+ +L++
Sbjct: 1 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLDEIMNNNQKKIASNIKREAKNADYLMI 60
Query: 113 WLDCDREGENICFEVIECTGFQVNDARR--------KVHRARFSSVTEKDILKAMGNLVE 164
W DCDREGE I +EV + +A+R +V+RA FS + + IL A N
Sbjct: 61 WTDCDREGEYIGWEVWQ-------EAKRGNRRIQDDQVYRAVFSHLERQHILHAARNPSR 113
Query: 165 PNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AV R EIDL+ GV FTR T + K
Sbjct: 114 LDMKSVQAVGTRIEIDLRAGVTFTRLLTETLRSK 147
>gi|448582254|ref|ZP_21645758.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
gi|445731902|gb|ELZ83485.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
Length = 840
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGTVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T++++ +A N + + N A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|448731889|ref|ZP_21714172.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
gi|445805167|gb|EMA55390.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
Length = 836
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A +IA +LSG S +V +G+ + + + GHV DFP
Sbjct: 3 LIITEKETAARNIAEILSG-------ESADVERRNGVNVYKWGGRRCVGLSGHVVENDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y +W P++L A V + +I L AR +++ D DREGE I E
Sbjct: 56 AEYSNWRDVEPVELIDAEVVVEPHESRENIVSTLRLLARDADGVIIATDYDREGELIGKE 115
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ +V DA + RARFSS E ++ +A NL + + + A A +ARQEIDL G A
Sbjct: 116 AHDIV-REVTDA--PIRRARFSSFAEPEVREAFENLDDLDFDLAAAGEARQEIDLVWGAA 172
Query: 187 FTRFQTTYFQGKYGNLDSRFISL 209
TRF + + + S FIS+
Sbjct: 173 LTRFLSLSAK----QMGSDFISV 191
>gi|313127266|ref|YP_004037536.1| DNA topoisomerase i [Halogeometricum borinquense DSM 11551]
gi|448288260|ref|ZP_21479461.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|312293631|gb|ADQ68091.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|445570299|gb|ELY24865.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
Length = 850
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
M+ L++ EK + A IA +LSG S E +G+ + + + GHV
Sbjct: 1 MSKGPELIITEKDNAARRIADILSG-------ESAEADRINGVNVYKWGGKRCIGLSGHV 53
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+DFPP Y DW P++L AP+ K + + +I L + AR +V+ D DREG
Sbjct: 54 VGVDFPPEYNDWRDVEPVELIDAPIDKHPT--QENIVAALRRLARNARRVVIATDYDREG 111
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E I E E D V R RFSS+T++++ +A N + N A A +ARQ +D
Sbjct: 112 ELIGKEAYELVRDVNEDV--PVDRVRFSSITDREVTEAFDNPDGLDFNLAAAGEARQIVD 169
Query: 181 LKVGVAFTRF 190
L G A TRF
Sbjct: 170 LVWGAALTRF 179
>gi|448382895|ref|ZP_21562324.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
gi|445660075|gb|ELZ12872.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
Length = 843
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLTRRAERVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ +A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEDVPIRRVRFSSITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGDDFISV 190
>gi|448337838|ref|ZP_21526911.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
gi|445624798|gb|ELY78171.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
Length = 843
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ ++E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNIYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L AR + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIGADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--RNVDEDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L FIS+
Sbjct: 171 ALTR----YLSLSAGQLGDDFISV 190
>gi|433592040|ref|YP_007281536.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|448334373|ref|ZP_21523551.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
gi|433306820|gb|AGB32632.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|445620259|gb|ELY73765.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
Length = 843
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++ EK + A IA +LSGG +R+ V+E+ G + + GHV +DF
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSSRENGVNVYEWGGK--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y DW P++L A V K + K +I L R + + D DREGE I
Sbjct: 55 PSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLTRRAERVTIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + D + R RFSS+TE ++ A + + + A A +ARQ IDL G
Sbjct: 113 EAYDIV--REVDEDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L FIS+
Sbjct: 171 ALTRFLSL----SAGQLGDDFISV 190
>gi|257389049|ref|YP_003178822.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
gi|257171356|gb|ACV49115.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
Length = 863
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LS G A+T E +G+ + + + GHV +DFP
Sbjct: 3 LIITEKENAARRIAEILSDG------AATAERE-NGVNVYRWGTKRCMGLSGHVVGVDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P +L A V K+ + +I L + AR + D DREGE I E
Sbjct: 56 PEYSDWRDVEPAELVAADVVKSATQE--NIVATLRKLARRADEATIATDYDREGELIGKE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E + + V R RFSS+T++++ +A N E + + A A +ARQ IDL G A
Sbjct: 114 AYELIREETD---VPVDRVRFSSITDREVREAFANPDEIDFDLAAAGEARQVIDLVWGAA 170
Query: 187 FTRF 190
TRF
Sbjct: 171 LTRF 174
>gi|56754407|gb|AAW25391.1| SJCHGC04238 protein [Schistosoma japonicum]
Length = 114
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
V MVAEKPS+A SIA LS + +R+ + +HE+ G F+ K+TSV GHV
Sbjct: 4 VFMVAEKPSLAESIAKSLSNKRNSSRRGFNLACSIHEWTGQFMSEQVRFKMTSVCGHVMN 63
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE 103
+DF Y W+ +P +LF AP+ K E+NPK+ + L E
Sbjct: 64 VDFLSRYNSWDKVDPAELFVAPIEKKEANPKLKMVDFLRHE 104
>gi|448543354|ref|ZP_21624919.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|448550308|ref|ZP_21628759.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
gi|448559491|ref|ZP_21633565.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445706491|gb|ELZ58369.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|445710881|gb|ELZ62676.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445711751|gb|ELZ63540.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
Length = 840
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G++ + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGNVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T +++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|147919417|ref|YP_686844.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622240|emb|CAJ37518.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 728
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK A IA +L G T+ + +G+ + S + + GH+ +DFP
Sbjct: 3 LIITEKNITAKKIAQILFG-------KGTKETKVEGVSVYSSGDTSIVGLSGHIVNIDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y +W+ + P DL +A ++ K I L + ++ + + D DREGE I E
Sbjct: 56 EQYNNWSVTAPKDLIRAETEMRYTHKK--IATALKKLSKDATSVTIATDYDREGELIGVE 113
Query: 127 VIEC-TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
+GF+ + K RA+FS++T+ +I +A N V + N A A +ARQ+IDL G
Sbjct: 114 AYRIISGFKPD---IKFDRAKFSAITKPEIDRAFSNRVPLDFNLAAAGEARQKIDLVWGA 170
Query: 186 AFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L F+S+
Sbjct: 171 ALTR----YISLTCGRLGKSFLSV 190
>gi|452206874|ref|YP_007486996.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
gi|452082974|emb|CCQ36256.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
Length = 849
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+V EK + A IA +LS G T R+ V+ + + + GHV +DF
Sbjct: 3 LIVTEKDNAARRIAEILSDGSASTNRQFGVNVYRWGDT--------RCVGLSGHVVGVDF 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
PP Y DW P++L A V K + +I R L A + + D DREGE I
Sbjct: 55 PPEYADWRDVQPVELVDADVVKMPTQE--NIVRTLQGLAADADRITIATDYDREGELIGK 112
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E E + DA + R RFSS+TE ++ +A N + + A A +ARQ IDL G
Sbjct: 113 EAYELAR-EETDA--PIDRVRFSSITENEVREAFSNPEALDFDLAAAGEARQVIDLLWGA 169
Query: 186 AFTRF 190
A TRF
Sbjct: 170 ALTRF 174
>gi|448572840|ref|ZP_21640601.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
gi|445719612|gb|ELZ71291.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
Length = 840
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T +++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRGVNEDV--PVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|448606973|ref|ZP_21659230.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
gi|445738401|gb|ELZ89921.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
Length = 840
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T +++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|292654846|ref|YP_003534743.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448292935|ref|ZP_21483256.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448597061|ref|ZP_21654199.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
gi|291370931|gb|ADE03158.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445571910|gb|ELY26453.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445740942|gb|ELZ92447.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
Length = 840
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA +LSG AS E +G+ + + + GHV +DFP
Sbjct: 7 LIITEKDNAARRIADILSG-----ETASAE--RMNGVNVYKWGGKRCIGLSGHVVGVDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW P++L APV K + + +I L + AR G + + D DREGE I E
Sbjct: 60 PEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGELIGKE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
E D V R RFSS+T +++ +A N + + + A A +ARQ IDL G A
Sbjct: 118 AYELVRDVNEDV--PVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAA 175
Query: 187 FTRF 190
TRF
Sbjct: 176 LTRF 179
>gi|352682630|ref|YP_004893154.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
gi|350275429|emb|CCC82076.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
Length = 606
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF-----DGMFLGSHAYIKVTSVVGHV 60
+L+VAEK S+A +IA L+ Y + + + F + LG + GH+
Sbjct: 1 MLIVAEKRSVAQAIAKYLATSYSYFKISGVMAYRFKYKDRQAVSLG---------LSGHI 51
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
DFP WNA P++LF + + L AR + L LD D EG
Sbjct: 52 LDFDFPQELNKWNALEPVELFDKITVLVPRDETIKYLYALRALARDEDEVYLALDADSEG 111
Query: 121 ENICFEVIECTGFQVN--DARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
E I +EV+ QV + R + R RF++VT+KDI++A VE + V AR
Sbjct: 112 EAIAYEVV----LQVRAVNPRARFKRVRFNAVTKKDIVQAFERPVELDLKVVEKVFARMV 167
Query: 179 IDLKVGVAFTRFQT 192
DL +G AFTR T
Sbjct: 168 SDLTIGAAFTRLLT 181
>gi|170582709|ref|XP_001896251.1| GRF zinc finger family protein [Brugia malayi]
gi|158596576|gb|EDP34899.1| GRF zinc finger family protein [Brugia malayi]
Length = 355
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFD---GMFLGSHAYIKVTSVV 57
++ L VAEK A SIA +LS G R + ++++F G G H + +TSV
Sbjct: 103 MRALFVAEKNDAAKSIAAILSRGTSTRRDGRSRFNKIYQFTANVGQNPGCH--VAMTSVS 160
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ + DFP ++++W + LF V K+ + L +E + LV+W DCD
Sbjct: 161 GHLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDVRATLIEEIQKSDLLVIWTDCD 220
Query: 118 REGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDAR 176
REGE I EV+ CT QVN V+RARFS +T + +A+ N ++ AV+ R
Sbjct: 221 REGEAIGAEVVSVCT--QVN-RNLDVYRARFSEITSAAVNRALNNFGRIDQRLVDAVECR 277
>gi|343424117|emb|CCD17943.1| DNA topoisomerase III, putative [Trypanosoma vivax Y486]
Length = 726
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173
+DCDREGENICFEV+ + Q + + +V RA F+++T +D+ A+ NL PN+ + AV
Sbjct: 1 MDCDREGENICFEVM--SVVQTVNRQIEVCRAHFNALTRRDLFTAVHNLKTPNKALSDAV 58
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
+ARQEIDL +G F+RFQT F+ + ++
Sbjct: 59 EARQEIDLGIGAVFSRFQTIKFRDMFRDM 87
>gi|448728862|ref|ZP_21711183.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
gi|445796237|gb|EMA46748.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
Length = 861
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A +IA +LSG S +V +G+ + + + GHV DFP
Sbjct: 3 LIITEKETAARNIAEILSG-------ESADVDRRNGVNVYKWGGRRCVGLSGHVVENDFP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y +W P++L A V + +I R L AR +++ D DREGE I E
Sbjct: 56 PEYSNWRDVEPVELIDAEVVVEPHESRENIVRTLRLLARDADGVIIATDYDREGELIGKE 115
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ V DA + RARFSS E ++ +A +L + + A A +ARQEIDL G A
Sbjct: 116 AHDIVR-DVTDA--PIRRARFSSFAEPEVREAFDDLDDLDFELAAAGEARQEIDLVWGAA 172
Query: 187 FTRF 190
TRF
Sbjct: 173 LTRF 176
>gi|71026270|ref|XP_762816.1| DNA topoisomerase III [Theileria parva strain Muguga]
gi|68349768|gb|EAN30533.1| DNA topoisomerase III, putative [Theileria parva]
Length = 531
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 94/206 (45%), Gaps = 65/206 (31%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L VL VAEKPS+A +I +LS G A+ ++E K++ + H+
Sbjct: 2 LNVLNVAEKPSVAKNITEILSYGN-----ATRTLNE-------PRLPSKLSQLATHI--- 46
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
P + W+ + ++LWLDCDREGE I
Sbjct: 47 --NPGFIHWSDA----------------------------------IILWLDCDREGEAI 70
Query: 124 CFEVIE-CTGFQVNDARRKVHRARFSSVT----------EKDILKAMGNLVEPNRNEALA 172
FEV+E C + N V RA FSSVT E DI A NL EPN+N A A
Sbjct: 71 AFEVLEVCYKVKKNLI---VRRAIFSSVTSQFTFHNWNSEPDIEHACVNLKEPNKNLANA 127
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGK 198
V+ RQEIDL++G A TR+ T ++ +
Sbjct: 128 VETRQEIDLRIGSAITRYLTLKYKTQ 153
>gi|282165112|ref|YP_003357497.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157426|dbj|BAI62514.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 704
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+V EK A IA +L G S + + DG+ + V + GH+ +DFP
Sbjct: 3 LIVTEKNITARKIAQLLLG--------SAKERKVDGVSVYEGDDTAVVGLSGHIVNIDFP 54
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y +W ++ P DL A + K I L + A+ H+ + D DREGE I E
Sbjct: 55 DEYNNWQSTAPKDLIWANTEMRYTQKK--IATALKKLAKEATHVTIATDFDREGELIGVE 112
Query: 127 VIECTGFQVNDAR--RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
+ DA K RAR+S++T ++I A N V + + A A +ARQ+IDL G
Sbjct: 113 AYHI----IKDAAPAAKFDRARYSAITRQEIEHAFANTVPIDFDLAAAGEARQKIDLVWG 168
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L + F+S+
Sbjct: 169 AALTR----YISLTCGRLGNSFLSV 189
>gi|154315224|ref|XP_001556935.1| hypothetical protein BC1G_04651 [Botryotinia fuckeliana B05.10]
Length = 647
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K I +++ +AR L +W DCDREGE+I EV + N R ++ RARFS++
Sbjct: 31 KKDIAQNIEAQARDAKALFIWTDCDREGEHIGGEV-RAQALKGN-PRIEIKRARFSNIER 88
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
+++A N V ++ + AV AR E+DL++G AFTRFQTT Q G L ++ +S
Sbjct: 89 AHVIQAAKNPVNLDQRQVDAVAARIELDLRIGYAFTRFQTTNLQKLGGPLATKMLS 144
>gi|330506959|ref|YP_004383387.1| DNA topoisomerase I [Methanosaeta concilii GP6]
gi|328927767|gb|AEB67569.1| DNA topoisomerase I [Methanosaeta concilii GP6]
Length = 766
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT-RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEK A IA +LSG K R E +FD V + GH+ +D+
Sbjct: 3 LIIAEKHDAAKRIAQILSGNKPRPYRIGGVEAFKFDDKV--------VMGLSGHIVGVDY 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENIC 124
PP Y +W + +L +A + N K V+ R L +EA + + D DREGE I
Sbjct: 55 PPGYNNWQKVDCKELIRAEIVVRPINDKIVNALRSLGKEA---DRITVATDYDREGELIG 111
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E ++ + + R + R R+S++ + +ILKA N + + + A + +ARQ IDL G
Sbjct: 112 VEALKIA--KEANPRLREDRVRYSAIVKDEILKAFKNAGKVDYDLAASGEARQIIDLVWG 169
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
A TR Y G L F+S+
Sbjct: 170 AALTR----YISLTSGRLGKEFLSV 190
>gi|327293864|ref|XP_003231628.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326466256|gb|EGD91709.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 632
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ +F P Y+ W + +P LF AP+ S+ I ++ + AR L
Sbjct: 2 MTSVLGHLLSYEFEPRYKSWTSCDPSVLFDAPIEVFVSSDSEPIADNIKRHARRADVLFN 61
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNE 169
W DCDREGE+I E I Q N A + RA F ++ I+ A+ V + +
Sbjct: 62 WTDCDREGEHIDTE-IRSVAAQSNQALVRASGTVRAYFFNIERTHIIHAVHCPVNLDEAQ 120
Query: 170 ALAVDARQEIDLKVGVAFTRFQT 192
A AV +R E+DL+VG +FTR T
Sbjct: 121 ANAVASRIELDLRVGASFTRHLT 143
>gi|116753908|ref|YP_843026.1| DNA topoisomerase I [Methanosaeta thermophila PT]
gi|116665359|gb|ABK14386.1| DNA topoisomerase I [Methanosaeta thermophila PT]
Length = 744
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 19/205 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGK-LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEK A I+ +L+G K T+ + + FD V + GH+ LD+
Sbjct: 3 LIIAEKHDAAKRISEILAGKKPTVTKVSGIDTFRFDDRV--------VIGLSGHIVGLDY 54
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P Y +W+ + DL +A + + + V R L +EA + + D DREGE I
Sbjct: 55 PECYNNWHKVDYRDLIRAEIVSRPTQERIVSALRKLGREA---DRVTIATDYDREGELIG 111
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E + C +VN + K R RFS++T+ +IL+A E + N A + +ARQ IDL G
Sbjct: 112 VEAL-CILQEVNPSI-KADRVRFSAITKSEILRAFAQPEEVDFNLAASGEARQIIDLVWG 169
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
A TRF + G L F+S+
Sbjct: 170 AALTRFISI----TSGRLGKEFLSV 190
>gi|397641070|gb|EJK74455.1| hypothetical protein THAOC_03864, partial [Thalassiosira oceanica]
Length = 948
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 103/232 (44%), Gaps = 51/232 (21%)
Query: 1 MAPLKVLMVAEKPSIALSIATVL---SGGKLYTRKAS--TEVHEFD------------GM 43
MA VL VAEKPS+A ++A V G + A+ T++ E D G
Sbjct: 1 MAGPIVLNVAEKPSVARALADVFRSSPGAQQRNNHANGPTQIFECDNVRFPCLDQQGSGR 60
Query: 44 FLGSHAYIK-----VTSVVGHV--------------------------FRLDFPPAYQDW 72
++A ++ T+V GH+ R DFP +Y W
Sbjct: 61 LASNNARVEGHTMITTAVRGHLASQVRVLVYELTAVTCCCKLIACSSPLRQDFPSSY-GW 119
Query: 73 NASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEV--IEC 130
NP+ LF AP++ + R L AR L+LWLDCDREGE I EV +
Sbjct: 120 RRVNPVALFDAPINTTYKEDMQPLERMLRDLARRASALILWLDCDREGEAISDEVRTVCL 179
Query: 131 TGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
G ++ ++ RA+FS+V +I +A+ L N N AV+AR E DL+
Sbjct: 180 RGNARLGSQNRIFRAKFSTVMPGEIQRALRTLGRVNENLVKAVEARSEHDLR 231
>gi|432331507|ref|YP_007249650.1| topoisomerase IA [Methanoregula formicicum SMSP]
gi|432138216|gb|AGB03143.1| topoisomerase IA [Methanoregula formicicum SMSP]
Length = 942
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF---DGMFLGSHAYIKVTSVVGHVFRL 63
L+VAEK A IA +L+GGK + V + D + +G + GHV +
Sbjct: 3 LIVAEKNISARRIAEILAGGKKVAEQKDAGVSTYHFGDTITVG---------LRGHVVEI 53
Query: 64 DFPPAYQDWNA--SNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF P YQ+W + + P L A K + K I L + A+ + + D D EGE
Sbjct: 54 DFEPGYQNWRSETATPRSLIDAKTIKVPTEKK--IVSLLQKLAKKADRVTIATDFDTEGE 111
Query: 122 NICFEVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
I E E V A +KV RARFS++TE+++ A E + A A +ARQ I
Sbjct: 112 LIGKEAYEL----VRAANKKVTIDRARFSAITEQELKHAFSTTTELDFALAAAGEARQSI 167
Query: 180 DLKVGVAFTRF 190
DL G + TRF
Sbjct: 168 DLMWGASLTRF 178
>gi|303389042|ref|XP_003072754.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
gi|303301896|gb|ADM11394.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
Length = 622
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 13/88 (14%)
Query: 110 LVLWLDCDREGENICFEVIECTGFQVND-----ARRKVHRARFSSVTEKDILKAMGNLVE 164
+V+W DCDREGENI G Q+ D + +V RARFS +T +DI A+GNL E
Sbjct: 2 VVIWTDCDREGENI--------GRQIRDIVLGVKKVEVKRARFSGITLRDIEGALGNLGE 53
Query: 165 PNRNEALAVDARQEIDLKVGVAFTRFQT 192
N EA AV+ R E+DL++G AFTR QT
Sbjct: 54 INEAEAEAVEVRMELDLRIGSAFTRLQT 81
>gi|396081254|gb|AFN82872.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 622
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 58/97 (59%), Gaps = 14/97 (14%)
Query: 110 LVLWLDCDREGENICFEVIECTGFQVNDARRKVH-----RARFSSVTEKDILKAMGNLVE 164
+V+W DCDREGENI G Q+ D KV RARFS +T KDI +A+ NL E
Sbjct: 2 VVIWTDCDREGENI--------GRQIRDIVLKVKNVNVKRARFSGITLKDIEEALRNLGE 53
Query: 165 PNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
N EA AVD R E+DL++G AFTR QT GK G
Sbjct: 54 INEAEAEAVDVRMELDLRIGSAFTRLQTLSL-GKVGQ 89
>gi|108804786|ref|YP_644723.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
gi|108766029|gb|ABG04911.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
Length = 702
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRK-ASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+++EK + A IA L+ G + K S H F + G + GHV ++
Sbjct: 3 LIISEKANAARKIAQFLAEGPVKEGKHRSVPYHTF--TWRGEECV--SVGLKGHVLNPEY 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P Y +W +P +L A + K+ S V + A+ +++ D DREGE I
Sbjct: 59 PEEYSNWQKVDPRELIDARILKSVSEKGVAAA--VRSLAKKADRVIIATDFDREGELIGV 116
Query: 126 EVIECTGFQVNDA-RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E + F+ N A V RARFS++T+ ++ +A NLVE +R A A +ARQ+IDL G
Sbjct: 117 EALSLA-FEANPALMDHVERARFSALTKGEVTRAFENLVEVSRELADAGEARQDIDLIWG 175
Query: 185 VAFTRFQTTYFQGKYGNLDSRFISL 209
TR+ + + +YG S F+S+
Sbjct: 176 ATLTRWVSRAVK-RYG---SAFLSV 196
>gi|349806351|gb|AEQ18648.1| hypothetical protein [Hymenochirus curtipes]
Length = 90
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G +RK + VHE+ G F+G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGSASSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHVMS 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHK 87
LDF Y +W+ +P +LF +AP K
Sbjct: 64 LDFIGKYNNWDKVDPAELFSKAPTKK 89
>gi|222641861|gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
VI+CTG ++ R++ RA+FSSVTEKDI+ AM NLV P+++EALAVDARQEIDLK
Sbjct: 2 VIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDLK 57
>gi|269986154|gb|EEZ92467.1| DNA topoisomerase type IA central domain protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 703
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 13/187 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK + A +IA L+ K+ + V + G V + GH+ + +P
Sbjct: 24 LIIAEKSTAAETIAKNLAETKIRIQDFGP-VKVWYTQINGEETV--VMPLKGHIKNVRYP 80
Query: 67 PAYQDWNASNPLDLFQAPV---HKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
++ WN + + A + AE N V + + A+ +++ D D EGE+I
Sbjct: 81 ETFRKWNEETLMKMIDAKLVYYPTAEDNIAV-----IKKFAKKADKVIIATDYDTEGESI 135
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
FE I+ + + + KV+R+ FSS+T K++ +A NL +PN++ + + DAR+EIDL +
Sbjct: 136 GFEAIDVV--REENTKSKVYRSVFSSLTTKELSEAFKNLQKPNKDLSDSADARREIDLIL 193
Query: 184 GVAFTRF 190
G TRF
Sbjct: 194 GAVLTRF 200
>gi|327310010|ref|YP_004336907.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
gi|326946489|gb|AEA11595.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
Length = 602
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L+VAEK S+A +IA L G Y+ + V + + G+ A + GH+ DF
Sbjct: 1 MLIVAEKRSVAQAIAKYLGG--TYSSFKVSGVSAYRFKYDGASAV--SLGLSGHILDFDF 56
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P W A +P LF V + L ARG + L LD D EGE I +
Sbjct: 57 PQEMNRWGAVDPARLFDEAVVLTPRPETLKYLYALRSLARGQDVVYLALDADSEGEAIAY 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV+ VN A R R RF++VT+ +I +A V+ + V AR DL +G
Sbjct: 117 EVVLQVRV-VNPAAR-FKRVRFNAVTKAEITRAFARPVDLDLKVVEKVFARMASDLTIGA 174
Query: 186 AFTRFQT 192
AFTR T
Sbjct: 175 AFTRLLT 181
>gi|327400378|ref|YP_004341217.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
gi|327315886|gb|AEA46502.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
Length = 667
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA++L +K + S+AY V + GH+ LDFP
Sbjct: 4 LIITEKHNTARRIASILFNDVKQLKKYGVSYYHSPS----SNAY--VVGLKGHIVELDFP 57
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y W L +A + K E K I R L + AR + + D DREGE I FE
Sbjct: 58 KEYNSWKNVPLRSLLRAELVK-EVKEK-GIARLLKELAREVDRVTVATDYDREGELIGFE 115
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+E QVN KV RA++S++T DI KA N + + N A A + RQ IDL G
Sbjct: 116 ALEIVK-QVN-PDVKVDRAKYSAITPADIKKAFSNPSKVDINLAKAAETRQRIDLIWGAV 173
Query: 187 FTRF 190
TR
Sbjct: 174 LTRL 177
>gi|402580660|gb|EJW74609.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 159 MGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
M NL PN NE+L+VDARQE+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 1 MRNLGRPNINESLSVDARQELDLRIGCAFTRFQTRYFQGKYGDLDSTTISF 51
>gi|296810820|ref|XP_002845748.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238843136|gb|EEQ32798.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 637
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 30/223 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEV------------HEFDGMF-LGSHAYIK 52
VL VAEKPSIA +IA L G ++ T +V +EFD F H +
Sbjct: 6 VLCVAEKPSIAKAIANHL-GDRVITVLELMDVQHNIQGNPYVKNYEFDYTFPQWGHCSVT 64
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+TSV+GH+ +F P Y+ W + +P LF A + + I ++ + AR L +
Sbjct: 65 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRADVLFI 124
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVH---RARFSSVTEKDILKAMGNLVEPNRNE 169
W DC I Q N A + RA FS++ I+ A + + +
Sbjct: 125 WTDCTE---------IRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQ 175
Query: 170 ALAVDARQEIDLKVGVAFTRFQTTYFQG--KYGNLD--SRFIS 208
A +V +R E+DL+VG +FTR T + + GNL S+ IS
Sbjct: 176 ANSVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLIS 218
>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
Length = 932
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYT--RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L++AEK A IA +L+ K + R+ + FD + GHV +D
Sbjct: 3 LIIAEKNIAAQRIAGILAENKKPSVKREEGVNTYSFDDKV--------AIGLRGHVVEID 54
Query: 65 FPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F P Y +W + P L A K + + I + + + A+ H+++ D DREGE
Sbjct: 55 FEPGYSNWRSETHTPKSLIDAGTIKKPTEKR--IVQLIKRLAKKADHVIIATDFDREGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E + + + RARFS++T+++I A N E + N A A +ARQ +DL
Sbjct: 113 IGKEAYEI--VRAANKTVPIKRARFSAITKQEITSAFANPAELDFNLAEAGEARQVVDLI 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|336476645|ref|YP_004615786.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
gi|335930026|gb|AEH60567.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
Length = 762
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK A IA++L+ K + V+ D + V + GH+ +DFP
Sbjct: 3 LIIAEKNIAAKRIASILAPKK----PKQSRVNGVDTYQFKNKEETVVIGLSGHIVTVDFP 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y++W +L A + ++ K I L + A+ ++ + D DREGE I E
Sbjct: 59 PQYKNWQKVESRELIDAEIVTVATHSK--IVSVLKKMAKKATNVTIATDYDREGELIGVE 116
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ + + K R R+S++T K+I A N V + N A A +RQ IDL G +
Sbjct: 117 ALNI--LKKANPDLKFDRVRYSAITPKEINDAFSNPVSIDFNLAAAGHSRQVIDLVWGAS 174
Query: 187 FTRFQTTYFQGKYGNL 202
TR+ + G+ GN+
Sbjct: 175 LTRY-LSLVSGRLGNM 189
>gi|308813033|ref|XP_003083823.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
gi|116055705|emb|CAL57790.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
Length = 382
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 6/67 (8%)
Query: 148 SSVTEKDILK------AMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
+S++ D LK AM +L NRNEALAVDARQE+DLK+GVAFTRFQT YF KY
Sbjct: 16 TSLSSTDALKRADRENAMKSLGRANRNEALAVDARQELDLKMGVAFTRFQTQYFLNKYDR 75
Query: 202 LDSRFIS 208
LD+R +S
Sbjct: 76 LDARVVS 82
>gi|386001200|ref|YP_005919499.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
gi|357209256|gb|AET63876.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
Length = 738
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK ++A IA +L+G K ++ VH + + V + GH+ +D+P
Sbjct: 3 LIIAEKHNVAKRIAQILAGSKPKVKR----VHGIEAFYFDDKV---VMGLSGHIVGVDYP 55
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y +W + DL A V + K I L+ + + + D DREGE I E
Sbjct: 56 PGYNNWQKVDYRDLIHAEVVTRPTQGK--IVSALHDLGKDADRITIATDYDREGELIGVE 113
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ + + K R RFS++T+ +I A + E + + A + +ARQ +DL G A
Sbjct: 114 ALRIA--EDANPTIKADRVRFSAITKGEIQDAFESPGEVDFDLASSGEARQVVDLIWGAA 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|119871906|ref|YP_929913.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
gi|119673314|gb|ABL87570.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
Length = 604
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L+VAEK S+A +IA L G + + F G+ + + + GH+ DF
Sbjct: 2 ILIVAEKRSVAQAIARYLGGTYKVEKIYGVSAYRF---LYGNREAVAL-GLSGHIMDYDF 57
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
W+ P +LF+ + R L AR + L LD D EGE I +
Sbjct: 58 TARQNVWSWLPPEELFKTSPILVLREEAIKYVRALRSLARKAEEVYLALDADSEGEAISY 117
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
EV ++ + K++R RF++VT KDI A N + + + V +R +IDL +G
Sbjct: 118 EV--ALVVRLVNKNVKIYRVRFNAVTYKDIKIAFQNPTKLDLKQVEKVFSRMQIDLTLGA 175
Query: 186 AFTRFQT 192
FTRF T
Sbjct: 176 VFTRFLT 182
>gi|154150402|ref|YP_001404020.1| DNA topoisomerase [Methanoregula boonei 6A8]
gi|153998954|gb|ABS55377.1| DNA topoisomerase [Methanoregula boonei 6A8]
Length = 942
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+VAEK A IA +L+GG K V + S + GHV +DF
Sbjct: 3 LIVAEKNISAHRIAQILAGGTRVIEKKDAGVSTY------SFGDTITVGLRGHVVEVDFE 56
Query: 67 PAYQDWNAS--NPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P Y++W + P L A K + + I + + AR + + D D EGE I
Sbjct: 57 PGYENWRSEKYTPRSLIDAKTIKVPTEKR--IVSLVQKLARHADRVTIATDFDTEGELIG 114
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E E + + K+ RARFS++T ++I A N + + A A +ARQ IDL G
Sbjct: 115 KEAYEL--VRAVNKNVKIDRARFSAITAQEIGSAFANTTDLDFALAAAGEARQSIDLMWG 172
Query: 185 VAFTRF 190
+ TRF
Sbjct: 173 ASLTRF 178
>gi|383320621|ref|YP_005381462.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321991|gb|AFD00944.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 706
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 41 DGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESN-PKVHICRH 99
DG+ + V + GH+ +DFP Y +W +P +L A KAE+ + I
Sbjct: 29 DGVSVYEDGDTAVIGLSGHIVNIDFPAEYNNWQNVSPRELIWA---KAETRYTQKKIVSA 85
Query: 100 LNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKV--HRARFSSVTEKDILK 157
L + A+ + + D DREGE I E + DA V RAR+S++T+ +I
Sbjct: 86 LKKLAKEASRVTIATDFDREGELIGVEAYNI----IKDANPSVIFDRARYSAITKPEIEH 141
Query: 158 AMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
A N V + N A A +ARQ+IDL G A TRF + G+ GN
Sbjct: 142 AFANTVPLDFNLAAAGEARQKIDLVWGAALTRF-ISLTCGRLGN 184
>gi|449328939|gb|AGE95214.1| DNA topoisomerase III [Encephalitozoon cuniculi]
Length = 621
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 13/88 (14%)
Query: 110 LVLWLDCDREGENICFEVIECTGFQVNDARRKV-----HRARFSSVTEKDILKAMGNLVE 164
+++W DCDREGENI G Q+ D KV RARFS +T +D+ A+ NL E
Sbjct: 2 VIIWTDCDREGENI--------GRQIRDIVLKVKKIDVRRARFSGITLRDVESALRNLGE 53
Query: 165 PNRNEALAVDARQEIDLKVGVAFTRFQT 192
N EA AV+ R E+DL++G AFTR QT
Sbjct: 54 INEAEAEAVEVRIELDLRIGSAFTRLQT 81
>gi|19074185|ref|NP_584791.1| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 621
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 13/88 (14%)
Query: 110 LVLWLDCDREGENICFEVIECTGFQVNDARRKV-----HRARFSSVTEKDILKAMGNLVE 164
+++W DCDREGENI G Q+ D KV RARFS +T +D+ A+ NL E
Sbjct: 2 VIIWTDCDREGENI--------GRQIRDIVLKVKKIDVRRARFSGITLRDVESALRNLGE 53
Query: 165 PNRNEALAVDARQEIDLKVGVAFTRFQT 192
N EA AV+ R E+DL++G AFTR QT
Sbjct: 54 INEAEAEAVEVRIELDLRIGSAFTRLQT 81
>gi|126178720|ref|YP_001046685.1| DNA topoisomerase [Methanoculleus marisnigri JR1]
gi|125861514|gb|ABN56703.1| DNA topoisomerase I [Methanoculleus marisnigri JR1]
Length = 931
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L++AEK A IA +L+G + T+ S + FD V + GHV +D
Sbjct: 3 LIIAEKNISANRIAQILAGNEKVRATKDGSVSTYSFDTK--------TVVGLKGHVVEVD 54
Query: 65 FPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F P Y +W + P L A + K + K I + + +R + + D D EGE
Sbjct: 55 FEPGYTNWRSETHTPRTLIDAGIVKKPTEKK--IVNLIQKLSRKADLVTIATDYDTEGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E + + +++RARFS++T +I A NL + + + A A +ARQ +DL
Sbjct: 113 IGKEAYEL--VRAVNPNVRINRARFSAITPAEIRTAFENLTDLDFDLAAAGEARQTVDLM 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|379003817|ref|YP_005259489.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
gi|375159270|gb|AFA38882.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
Length = 602
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 12/190 (6%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L+VAEK S+A +IA L GG + + F+ + G A + GH+ DF
Sbjct: 2 ILIVAEKRSVAHAIAKFLGGGYKLEKIQGVAAYRFN--YGGREAV--ALGLSGHLMDFDF 57
Query: 66 PPAYQDWNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
W P +LF + V++ E+ V R L A + L LD D EGE
Sbjct: 58 AARQNVWTWIPPEELFASQPLIVYRPETMKYVKALRTL---AARTHEVYLALDADVEGEA 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +E ++ + R K++R RF++VT+++I A N N V R ++DL
Sbjct: 115 IAYEA--ALLVRLMNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKVFTRMQVDLT 172
Query: 183 VGVAFTRFQT 192
+G FTRF T
Sbjct: 173 LGAVFTRFIT 182
>gi|374629454|ref|ZP_09701839.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
gi|373907567|gb|EHQ35671.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
Length = 935
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 24/192 (12%)
Query: 7 LMVAEKPSIALSIATVLSG-GKLYTRKAST-EVHEFDG-MFLGSHAYIKVTSVVGHVFRL 63
L++AEK A IA LS GK T K + ++ FD + LG + GHV +
Sbjct: 3 LIIAEKNIAAQRIAGFLSSSGKPKTEKDNNVSIYRFDDKVALG---------LRGHVVEV 53
Query: 64 DFPPAYQDWNASN--PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREG 120
DF Y++W + P L A + + + K V + + L+++A + + D DREG
Sbjct: 54 DFEEGYKNWRSETHTPRTLIDAGIIRKPTEKKIVALIKKLSKKA---DLVTIATDYDREG 110
Query: 121 ENICFEVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
E I E E V +A +KV +RARFS++T+++I A N E + + A A +ARQE
Sbjct: 111 ELIGKEAYEI----VREANKKVPVNRARFSAITKQEISAAFDNPAEIDFDLAAAGEARQE 166
Query: 179 IDLKVGVAFTRF 190
IDL G + TRF
Sbjct: 167 IDLVWGASLTRF 178
>gi|219851924|ref|YP_002466356.1| DNA topoisomerase type IA central domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219546183|gb|ACL16633.1| DNA topoisomerase type IA central domain protein [Methanosphaerula
palustris E1-9c]
Length = 938
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK A IA +L+G K EV + G+ S V + GHV +DF
Sbjct: 3 LIITEKNIAADRIAHILAG------KTYVEVKKDGGVSTYSFNDTVVVGLRGHVVEVDFE 56
Query: 67 PAYQDWNA--SNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENI 123
P Y +W + + P L A KA ++ K V + + L ++A H+ + D D EGE I
Sbjct: 57 PGYTNWRSEVNTPRSLISARTIKAPTDKKIVTLIQKLTKKA---DHVTIATDFDTEGELI 113
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E + D R V R+RFS++TE++I A E + A A +ARQ IDL
Sbjct: 114 GKETYDLVKAVKPDVR--VDRSRFSAITEEEIQTAFAAPAELDFALAAAGEARQLIDLIW 171
Query: 184 GVAFTRF 190
G + TRF
Sbjct: 172 GASLTRF 178
>gi|288931982|ref|YP_003436042.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
gi|288894230|gb|ADC65767.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
Length = 653
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+V EK A IA +L G +K +L A V + GHV DFP
Sbjct: 3 LIVTEKNQTAKRIAQILFGSFQTKKKYGV------NYYLNGDAC--VVGLKGHVVEYDFP 54
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y DW L A + + I R L + A+ + + D DREGE I E
Sbjct: 55 PEYNDWKRVELKSLLNARIVRVVKEK--SIVRLLEELAKKADRVTIATDYDREGELIGLE 112
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
++ D R + R +FS++T ++I KA + + N N A A + RQ IDL G
Sbjct: 113 AVQIIKRVNPDVR--IDRVKFSAITPEEIRKAFSSPGKINVNLAKAAETRQIIDLLWGAV 170
Query: 187 FTRF 190
TR
Sbjct: 171 LTRL 174
>gi|435850997|ref|YP_007312583.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
gi|433661627|gb|AGB49053.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
Length = 753
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L+VAEK A IA +LS GKL R + ++F+ G +I ++ GH+ +LDF
Sbjct: 3 LIVAEKHIAAKRIANILSAGKLSQVRVNGVDTYQFEAED-GKKVFIGLS---GHIVKLDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P +Y +W +L A V + + I L + + + + D DREGE I
Sbjct: 59 PRSYNNWQKVEAKELVDADVITVST--EARIVAALKKLGKEATRVTIATDYDREGELIGV 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E ++ ++N + R +S++T K+I+ A N+ + N A A +RQ +DL G
Sbjct: 117 EALQIIR-EIN-PNVQFDRVHYSAITPKEIIDAFENVSNIDFNLADAGHSRQVLDLVWGA 174
Query: 186 AFTRFQTTYFQGKYGNL 202
+ TRF + G+ G L
Sbjct: 175 SLTRF-ISLAAGRLGKL 190
>gi|171186180|ref|YP_001795099.1| DNA topoisomerase type IA central domain-containing protein
[Pyrobaculum neutrophilum V24Sta]
gi|170935392|gb|ACB40653.1| DNA topoisomerase type IA central domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 604
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 7 LMVAEKPSIALSIATVLSG----GKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
L+VAEK S+A +IA L G G+LY V + +LG A + GH+
Sbjct: 3 LIVAEKRSVAQAIARYLGGSYKSGRLYG------VPFYSFTYLGREA--AALGLSGHIMD 54
Query: 63 LDFPPAYQDWNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
DF W P +LF+A V + E+ V R L ++A + L LD D E
Sbjct: 55 YDFTARENVWTWIPPEELFRATPVLVFRPETANYVKALRSLAKKAE---RVYLALDADVE 111
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
GE I +E ++ + R +++R RF++VT +D+ A + + + V R +I
Sbjct: 112 GEAIAYEA--ALVVKLVNRRAEIYRVRFNAVTYRDVRSAFQKPTKLDLRQVEKVFTRMQI 169
Query: 180 DLKVGVAFTRFQT 192
DL +G FTRF T
Sbjct: 170 DLTLGAVFTRFLT 182
>gi|294495850|ref|YP_003542343.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
gi|292666849|gb|ADE36698.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
Length = 737
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 8/184 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK A IA++LS K ++ S D G+ V + GH+ +LDFP
Sbjct: 3 LIIAEKQIAARRIASILSPKKPQKKRISG----IDSYEFGNDEKTIVIGLSGHIVQLDFP 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
PAY +W +L A + ++ K I L + + + + D DREGE I E
Sbjct: 59 PAYNNWQKVEAKELVDAELIITPTHAK--IVSALKKLGKKATKVTIATDYDREGELIGVE 116
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ VN++ + RA +S++T I +A N + + N A A +RQ IDL G +
Sbjct: 117 ALNIVK-GVNES-IEYERAVYSAITPAAIKEAFENTTKIDFNLADAGHSRQVIDLVWGAS 174
Query: 187 FTRF 190
TRF
Sbjct: 175 LTRF 178
>gi|13540850|ref|NP_110538.1| DNA topoisomerase I [Thermoplasma volcanium GSS1]
gi|14324233|dbj|BAB59161.1| DNA topoisomerase 1 [Thermoplasma volcanium GSS1]
Length = 770
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 15/203 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVH-EFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+++AEK IA LS G R+ + EF+ + + + GH+ DF
Sbjct: 7 VIIAEKVDAGRRIAYFLSNGTAKARRVKGLSYIEFES----NGKKTLLIPLSGHIVEADF 62
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P + +W ++ +L A + K N + + L+ +++ D DREGE I
Sbjct: 63 PENFSNWEKTDLKELIDADIVKKVKNKSAY--QTLSSFKGKADEIIIATDYDREGELIGV 120
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E ++ + + + KV RA+FSS+ ++I A ++ N N A A DAR+ IDL G
Sbjct: 121 EALDI----IKEGQEKVLRAKFSSLVGQEIRNAFEKPIDVNYNLADAADARESIDLIWGA 176
Query: 186 AFTRFQTTYFQGKYGNLDSRFIS 208
TRF F G L F+S
Sbjct: 177 VLTRF----FSLATGRLGRYFLS 195
>gi|383320605|ref|YP_005381446.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321975|gb|AFD00928.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 700
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 80/184 (43%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK A IA++L + +R V+ + A V + GHV LDFP
Sbjct: 21 LIITEKHDAASKIASILFQDCVASRVNGVPVYR------SNKADAAVIGLAGHVVELDFP 74
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
P Y W A P L APV + K I L A + + D DREGE I
Sbjct: 75 PEYGRWTAHPPSALIAAPVITVPT--KKDIIGALESLAPSATRVTIATDYDREGELIG-- 130
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+E ++ R R+SS ++IL A + + A A + RQEIDL G A
Sbjct: 131 -VEAYNIVRRLSKAPFDRVRYSSFARQEILGAFSKPTSLDFSLAAAGECRQEIDLVWGAA 189
Query: 187 FTRF 190
TRF
Sbjct: 190 LTRF 193
>gi|308159678|gb|EFO62200.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 895
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 98/244 (40%), Gaps = 61/244 (25%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA------------STEVHEFDGMFLGSHAYIKV 53
+L V EK S+A +++VLS G Y++K S E H D ++ HA
Sbjct: 5 ILCVTEKNSVAAEVSSVLSKGS-YSKKQLAQYFNEYKFIHSEEEHGPDQQYVVVHAQ--- 60
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLW 113
GH+ L+ Y+ W P DLF VH E+ + L A G L+L
Sbjct: 61 ----GHMLELEPDEGYE-WGKCAPSDLFTCGVHFKEN--AIFKKNVLKPNATGTNVLILM 113
Query: 114 LDCDREGENICFEVIEC--------TGFQVNDARRK------------------------ 141
LD DREGENI ++IE T + AR
Sbjct: 114 LDADREGENIGCDIIEIFCSILPTGTLLDIRPARLPKIRNPTEHTLQHILASDHVPSQTS 173
Query: 142 ------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYF 195
V RARF +T ++ A+ N + N AVD RQ DL++G + TR QT
Sbjct: 174 IKRTIVVKRARFFGLTYSELTSAIYNAGPIDMNVVDAVDVRQFTDLRLGYSITRLQTDKL 233
Query: 196 QGKY 199
+ +
Sbjct: 234 RSSF 237
>gi|159119187|ref|XP_001709812.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437929|gb|EDO82138.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 896
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 100/245 (40%), Gaps = 63/245 (25%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA------------STEVHEFDGMFLGSHAYIKV 53
+L V EK S+A ++ VLS G Y++K S E H ++ HA
Sbjct: 5 ILCVTEKNSVAAEVSNVLSKGS-YSKKQLVQYFNEYKFTHSEEEHGPAQQYVVVHAQ--- 60
Query: 54 TSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVH-KAESNPKVHICRHLNQEARGCGHLVL 112
GH+ L+ Y+ W +P DLF VH KA + K H+ R A LVL
Sbjct: 61 ----GHMLELEPDEGYE-WGKCSPSDLFTCGVHFKANAVFKKHVLR---PNAAETNVLVL 112
Query: 113 WLDCDREGENICFEVIEC--------TGFQVNDARRK----------------------- 141
LD DREGENI +++IE T + AR
Sbjct: 113 MLDADREGENIGYDIIEIFCSVLPADTLLDIRPARLPKIRSPTEHTLRHILAADHVPSQT 172
Query: 142 -------VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTY 194
V RARF +T ++ A+ N + N AVD RQ DL++G + TR QT
Sbjct: 173 SVKRTIIVKRARFFGLTYPELTSAVYNAGPIDMNVVDAVDVRQFTDLRLGYSITRLQTDK 232
Query: 195 FQGKY 199
+ +
Sbjct: 233 LRSSF 237
>gi|145591572|ref|YP_001153574.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
gi|145283340|gb|ABP50922.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
Length = 602
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L+VAEK S+A +IA L G + + F+ + G A + GH+ DF
Sbjct: 2 ILIVAEKRSVAHAIAKFLGGRYKLEKIQGVAAYRFN--YGGREAV--ALGLSGHLMDFDF 57
Query: 66 PPAYQDWNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
W P +LF + V++ E+ + R L A + L LD D EGE
Sbjct: 58 TARQNVWTWIPPEELFASQPLIVYRPETMKYIRALRTLAARAH---EVYLALDADVEGEA 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +E ++ + R K++R RF++VT+++I A N N V R ++DL
Sbjct: 115 IAYEA--ALLVRLVNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKVFTRMQVDLT 172
Query: 183 VGVAFTRFQT 192
+G FTRF T
Sbjct: 173 LGAVFTRFIT 182
>gi|147919524|ref|YP_686736.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622132|emb|CAJ37410.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 767
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 7 LMVAEKPSIALSIATVL---------SGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVV 57
L++ EK A IA +L +G Y KA+ D + +G +
Sbjct: 3 LIITEKHDAASKIAAILFKDRTPERINGVPAYRSKAA------DALVIG---------LA 47
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
GH+ LDFP AYQ W+A P +L +A V S K + L A + + D D
Sbjct: 48 GHILELDFPEAYQKWSAFPPRELIRAQVVTYPS--KKDLVGALATLATKVTRVTIATDYD 105
Query: 118 REGENI---CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
REGE I + +I+ D R R+SS T+++I KA + + + A A +
Sbjct: 106 REGEMIGVEAYNIIKKISSPTFD------RVRYSSFTKEEITKAFASPTAVDFDLAAAGE 159
Query: 175 ARQEIDLKVGVAFTRF 190
RQEIDL G A TRF
Sbjct: 160 CRQEIDLVWGAALTRF 175
>gi|384486567|gb|EIE78747.1| DNA topoisomerase [Rhizopus delemar RA 99-880]
Length = 480
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKD 154
I ++ E R L +W DCDREGE I +V + C + N ++ RA+FSS+
Sbjct: 4 IANNIKSEVRSADVLFIWTDCDREGEAIGGDVKDLCQSVKPNI---QIWRAQFSSMQPAA 60
Query: 155 ILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQT 192
I +A N VE + + AV+ RQE+DL++G AFTR QT
Sbjct: 61 IHRAARNHVELDMKQVYAVNTRQELDLRIGAAFTRLQT 98
>gi|307596564|ref|YP_003902881.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
gi|307551765|gb|ADN51830.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
Length = 618
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFL--GSHAYIKVTSVVGHVFRLD 64
L+VAEK S+A +IA L+ G + +K V+ + G ++ + + GH+ +D
Sbjct: 6 LVVAEKDSVAKAIAKYLAQGSISVKK----VYGVKSYWFTRGGRQWVSI-GLKGHMMDVD 60
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
FP W++ P LF A + R L++ + L LD D EGE I
Sbjct: 61 FPEELNKWHSVEPSKLFDAEPILVIREDTISYVRALSRLGASASVVYLALDADSEGEAIA 120
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
+E + + + R R FS+VT+ DI++A + N A V R +DL +G
Sbjct: 121 YEAMLV--IRNANPRAVFKRVLFSAVTKSDIIEAFNSPTSLNPGLAKRVFTRMILDLTLG 178
Query: 185 VAFTRFQT 192
FTR T
Sbjct: 179 AVFTRALT 186
>gi|116192151|ref|XP_001221888.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
gi|88181706|gb|EAQ89174.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
Length = 680
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYT---RKASTEVHEFDGMF--LGSHAYIKVTSVVGH 59
++L VAEKPSI+ ++A LSGG+ T R + + FD F H + +T+V GH
Sbjct: 3 RILCVAEKPSISKAVAGHLSGGQYQTNNTRNTYIKNYTFDYDFGPPWGHCSVTMTAVKGH 62
Query: 60 VFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL-DCDR 118
+ ++FP Y+ W P LF APV I +++ +AR W DR
Sbjct: 63 LTTVEFPSDYKQWEYPPPDRLFDAPVLTVIPPDNKSIAKNIEDQAR----RARWACHLDR 118
Query: 119 ---EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
E + ++ ++ RARFS++ +++ AV A
Sbjct: 119 FAIEKGETHRKARSGLPRGKGNSNIQIKRARFSNI---------------EKSQVDAVSA 163
Query: 176 RQEIDLKVGVAFTRFQTTYFQ---GKYGNLDSRFISLVFSSLFLI 217
R E+DL++G AFTRF T + G L + S F +L +
Sbjct: 164 RIELDLRIGYAFTRFLTLNLRPLGGPLSKLTLSYGSCQFPTLGFV 208
>gi|298674647|ref|YP_003726397.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
gi|298287635|gb|ADI73601.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
Length = 742
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAST------EVHEFDGMFLGSHAYIKVTSVVGHV 60
L++AEK A IA +L+ K + S E +E D + +G + GH+
Sbjct: 3 LIIAEKHIAAKRIAAILAPKKPKKVRVSGVDTYEYEDNEDDKIVMG---------LSGHI 53
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDFP Y +W N DL A + + +V I L + + + + D D EG
Sbjct: 54 VELDFPKEYNNWQKVNAEDLIDAELITKPT--QVKIVAALKKLGKKASKVTIATDYDGEG 111
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
E I E ++ D + R ++S++TEK+I A N V + N A A +RQ ID
Sbjct: 112 ELIGVEALDIIKKVNQDIQ--FDRVKYSAITEKEIKNAFSNPVNVDFNLADAGHSRQVID 169
Query: 181 LKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
L G + TR Y G L F+S+
Sbjct: 170 LVWGASLTR----YISLSAGRLGKMFLSV 194
>gi|11499394|ref|NP_070633.1| DNA topoisomerase I [Archaeoglobus fulgidus DSM 4304]
gi|14423959|sp|O28469.1|TOP1_ARCFU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2648740|gb|AAB89443.1| DNA topoisomerase I (topA) [Archaeoglobus fulgidus DSM 4304]
Length = 663
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 11/195 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA++L +K + + AY V + GH+ LDFP
Sbjct: 6 LIITEKDNTARRIASILFKDVKTLKKGRVSYYHSPS----NDAY--VVGLKGHIVELDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+W + L QA + K + I L + A+ + + D DREGE I E
Sbjct: 60 KELNNWTKTPLEKLLQAELVKKVK--ERTISSILKEIAKKADRVTVATDYDREGELIGVE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+E VN KV R R+S+VTEK+I A V+ + N A A ARQ+IDL G
Sbjct: 118 ALEIVK-SVNPTV-KVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALARQKIDLIWGAT 175
Query: 187 FTRFQTTYFQGKYGN 201
TR + + G+ G
Sbjct: 176 LTRLISVH-SGRMGK 189
>gi|48477819|ref|YP_023525.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
gi|48430467|gb|AAT43332.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
Length = 753
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK IA +LS T K F F ++ + + GHV DFP
Sbjct: 5 LIIAEKMDAGRRIAYILSKK---TSKQKRSKGSFYIEFESNNERNVLVPLSGHVLEADFP 61
Query: 67 PAYQDWNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
++DW S+ L+L V+ ++ ++ ++ + ++++ D DREGE I
Sbjct: 62 SDFKDWLKSD-LNLLIDSRIVYNVKNQRAINTLKNF----KDADNIIIATDYDREGELIG 116
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
EV++ + + RA+FS++TEK+I A N + + N A + AR+EIDL G
Sbjct: 117 TEVLKFLN------AKNIKRAKFSALTEKEINDAFSNTINVDYNLADSAQAREEIDLIWG 170
Query: 185 VAFTRF 190
TRF
Sbjct: 171 AVLTRF 176
>gi|397781506|ref|YP_006545979.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
gi|396940008|emb|CCJ37263.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
Length = 931
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLY--TRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L++AEK A IA +L+G + ++ + FD V + GHV +D
Sbjct: 3 LIIAEKNISANRIAQILAGNEKVRAVKEGGVSTYSFDTK--------TVVGLKGHVVEVD 54
Query: 65 FPPAYQDWNAS--NPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F P Y +W + P L A K + K I + + A+ + + D D EGE
Sbjct: 55 FEPGYTNWRSKVHTPRTLIDAGTVKKPTEKK--IVNLIQKLAKKADLVTIATDYDTEGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E VN A R ++RARFS++T +I A NL + + A A + RQ +DL
Sbjct: 113 IGKEAYELV-RAVNPAVR-INRARFSAITPAEIRSAFDNLTDLDFALAAAGEVRQMVDLM 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|18313747|ref|NP_560414.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
gi|18161303|gb|AAL64596.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
Length = 602
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+VAEK S+A SIA L G+ Y + V + + G A + GH+ DF
Sbjct: 3 LIVAEKRSVAQSIAKFL--GRSYKSQKLYGVSVYRFNYGGGEAV--AIGLSGHIMDFDFA 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
W P +LF A + + L A + L LD D EGE I +E
Sbjct: 59 ARQNVWTWLPPEELFNATPILVLRGETLKYVKALKSLATKADEVYLALDADVEGEAIAYE 118
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
++ + R +++R RF++VT K+I+ A + + V R ++DL +G
Sbjct: 119 T--ALVVKMVNPRARLYRVRFNAVTYKEIVSAFQKPTYIDLKKVEKVFTRMQVDLTLGAV 176
Query: 187 FTRFQT 192
FTRF T
Sbjct: 177 FTRFLT 182
>gi|355572493|ref|ZP_09043605.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
gi|354824533|gb|EHF08778.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
Length = 946
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAY--IKVTSVVGHVFRLD 64
L+VAEK A IA++L+G K V E + S+++ V + GHV +D
Sbjct: 3 LIVAEKNISARRIASILAGEK--------NVRELKDGGISSYSFNGTTVVGLRGHVVEVD 54
Query: 65 FPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F Y +W + + P L AP K + K I L + A+ + + D D EGE
Sbjct: 55 FVEGYSNWRSESKTPRSLIDAPTIKVPTEKK--IVALLQKLAKKATRVTIATDFDTEGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E + + V R RFS++T +I A + E + A A +ARQ IDL
Sbjct: 113 IGKEAYEL--VRAVNPSVPVDRVRFSAITPGEIRHAFASPTEIDFALASAGEARQVIDLM 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|410670057|ref|YP_006922428.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
gi|409169185|gb|AFV23060.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
Length = 741
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 10/197 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKL-YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEK A IA++L+ KL R + + +E+ G +I ++ GH+ +LDF
Sbjct: 3 LIIAEKHIAAKRIASILAQDKLKQVRVSGVDTYEY-GTGEDRKVFIGLS---GHIVKLDF 58
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
P AY +W +L A V ++ +V I L + + + D DREGE I
Sbjct: 59 PKAYNNWQKVEAKELIDAQV--ITTSTQVKIVSALKKLGKEATKATIATDYDREGELIGV 116
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E ++ + + + R +S++T K+I N + + + A A +RQ IDL G
Sbjct: 117 EAVDI--LKSVNPDIEFDRVHYSAITPKEIHDTFENPAKIDFSLADAGHSRQVIDLVWGA 174
Query: 186 AFTRFQTTYFQGKYGNL 202
+ TR+ + G+ GN+
Sbjct: 175 SLTRY-ISLAAGRLGNM 190
>gi|395645621|ref|ZP_10433481.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
gi|395442361|gb|EJG07118.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
Length = 942
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRK--ASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L+VAEK A IA +L+G T K + + FD L + GHV +D
Sbjct: 3 LIVAEKNISARRIAAMLAGNNHVTNKKEGGVDTYAFDDTVL--------VGLKGHVVEVD 54
Query: 65 FPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F Y +W + P L A + K + + I L + A+ + + D D EGE
Sbjct: 55 FVEGYTNWRSEERPPRSLIDAGIVKRPTEKR--IVSLLQKLAKKADLVTIATDFDTEGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E VN R + RARFS++T ++I +A L E + A A ++RQ IDL
Sbjct: 113 IGKEAYELV-RAVNKGVR-ILRARFSAITPQEIKRAFSELTELDFALAAAGESRQIIDLM 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|315425546|dbj|BAJ47207.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
gi|343484402|dbj|BAJ50056.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 606
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 31/192 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+++VAEK S+A +I V+S K A V+SV GH+ D
Sbjct: 14 KLIIVAEKASVARAIKAVVSAAK---------------------ANAVVSSVRGHMMEAD 52
Query: 65 FPPAYQDWNASNPLDL--FQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
P Y+ W A +P ++ + V K N + L + G G LV+ D D EGE
Sbjct: 53 LPDGYE-WGAKHPFEIIKLRKVVDKISDN---RVFEQLVKVFSGGGVLVIATDNDSEGEL 108
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--RQEID 180
I +E+++ +V V+R RF+SV +++ ++ NL E N A RQ D
Sbjct: 109 IGYEILQVYR-RVTGGEPVVYRMRFNSVDRRELFASLRNL-EKGLNMRWVEKARFRQIFD 166
Query: 181 LKVGVAFTRFQT 192
L G AFTR T
Sbjct: 167 LVTGAAFTRLLT 178
>gi|346310924|ref|ZP_08852936.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
gi|345897172|gb|EGX67103.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
Length = 862
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 104/242 (42%), Gaps = 50/242 (20%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEK A IA +L+ GK K +T V+ FD + ++ + + GH+ DF
Sbjct: 3 LVIAEKNIAAQKIAQLLATGKPKNDKVYNTPVYRFD---VEGEEWVSM-GLAGHILAPDF 58
Query: 66 PPAY-----QDW----------NASNPLDLFQAPVH----------------KAESNP-- 92
P + W NA P L + P K ES P
Sbjct: 59 PDEILFDKKEGWYSLTEDGEVLNAQVPDGLARPPYDTKRKPFLANGINIKGWKVESLPYL 118
Query: 93 ----------KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKV 142
+ I R L A+ +V+ D DREGE I + + C D V
Sbjct: 119 TWAPIIKNPAEKEIIRVLKNLAKKADSVVIATDFDREGELIGSDALSCVREVAPDV--PV 176
Query: 143 HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNL 202
RAR+S++ + ++ +A NLVE ++N A A ++RQ IDL G TR+ T G +GN+
Sbjct: 177 SRARYSALIKGEVTEAFNNLVELDQNLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNV 236
Query: 203 DS 204
S
Sbjct: 237 RS 238
>gi|88602302|ref|YP_502480.1| DNA topoisomerase [Methanospirillum hungatei JF-1]
gi|88187764|gb|ABD40761.1| DNA topoisomerase I [Methanospirillum hungatei JF-1]
Length = 931
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEF---DGMFLGSHAYIKVTSVVGHVFRL 63
L++AEK A IA +LSG + K V+ + D + +G + GHV +
Sbjct: 3 LIIAEKNIAANRIAQILSGKDKVSAKKEGGVNVYTFGDKISIG---------LRGHVVEV 53
Query: 64 DFPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF Y +W + P L A K + P I + +++ A+ + + D D EGE
Sbjct: 54 DFVEGYTNWRSQERPPRSLIDAETIKRPTEP--AIVKLIHKIAKKANRVTIATDFDTEGE 111
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E E + + + + RARFS++T+++I +A + + + A A +ARQ +DL
Sbjct: 112 LIGKEAYEL--VRAVNPKVPIDRARFSAITKEEINRAFSEPSDLDFDLAAAGEARQVVDL 169
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
G + TRF + + GN+
Sbjct: 170 IWGASLTRFISLAAKRGGGNI 190
>gi|257065031|ref|YP_003144703.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
gi|256792684|gb|ACV23354.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
Length = 837
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 80 LFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138
L AP+ K NPK I R L A+ +++ D DREGE I + + C +VN
Sbjct: 119 LVYAPIQK---NPKEKDIIRSLKNLAKKADDIIIATDFDREGELIGSDALSCI-REVN-T 173
Query: 139 RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
V RAR+S++ + +I A NLVE + N A A ++RQEIDL G TR+ T
Sbjct: 174 TAPVSRARYSALIKPEITHAFENLVELDMNLAHAGESRQEIDLIWGAVLTRYLTIVKFAG 233
Query: 199 YGNLDS 204
YGN+ S
Sbjct: 234 YGNVRS 239
>gi|170289862|ref|YP_001736678.1| DNA topoisomerase I [Candidatus Korarchaeum cryptofilum OPF8]
gi|170173942|gb|ACB06995.1| DNA topoisomerase I [Candidatus Korarchaeum cryptofilum OPF8]
Length = 710
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++ EKP++A IA++LS G R+ +EFD G Y V GH+ L
Sbjct: 1 MTTLILTEKPNVAKRIASILSEGAKAKREGKVYYYEFD---TGGERYY-VAPAAGHLLEL 56
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
D+PP ++ + P + E K + L + + +++ D D EG +I
Sbjct: 57 DYPPGKWEYPSIVPPERLVL----KEIKGKREYLKILEKLGKLSNRIIVATDLDSEGSSI 112
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
E+I+ +N +++ R FSS+T+++I + +L + A A R+ IDL+
Sbjct: 113 ALEIIKA----LNWEGKEILRMEFSSLTKEEIRSSFRDLKPFDYPRAYAGWVRRVIDLEW 168
Query: 184 GVAFTRFQT 192
G +R T
Sbjct: 169 GANVSRGLT 177
>gi|403222791|dbj|BAM40922.1| DNA topoisomerase III [Theileria orientalis strain Shintoku]
Length = 619
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKL---YTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
L V VAEKPS+A +I +LS G+ +T V F + TSV GH+
Sbjct: 2 LSVFNVAEKPSVANNITEILSNGRKNREFTHSRMNPVFSFQYYIESRMCKMYFTSVRGHL 61
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
LDF P Y++W+ + DLF H + + I + L+ +R+
Sbjct: 62 MGLDFEPNYRNWSRTAIEDLFTGKFHTSTHSADDFIGKQR-------------LEGNRK- 107
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN--------EALA 172
E I A R + R++ + DI A+ NL EPNRN E A
Sbjct: 108 -----EYI---------ALRTLSRSKCAG---SDIEHALNNLKEPNRNLANVSIKSEYGA 150
Query: 173 VDARQEIDLKVG 184
V+ RQEIDL++G
Sbjct: 151 VETRQEIDLRIG 162
>gi|124485959|ref|YP_001030575.1| hypothetical protein Mlab_1139 [Methanocorpusculum labreanum Z]
gi|124363500|gb|ABN07308.1| DNA topoisomerase, type IA, central domain protein
[Methanocorpusculum labreanum Z]
Length = 935
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGK--LYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L++AEK +A IA L+G TR + + FD V + GHV +D
Sbjct: 3 LIIAEKNIVAERIAAFLAGKAKVQVTRDGAAAHYVFDDTV--------VMGLRGHVVEVD 54
Query: 65 FPPAYQDWNASN--PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
F Y +W + P L A + K + K I + + + + + D D EGE
Sbjct: 55 FVEGYNNWRSVEHPPRSLINADIVKKPTEKK--IVGLMQKFGKKATRVTIATDYDTEGEL 112
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I E E + + + + RARFS++T+ +I+K++ + N A A ++RQ IDL
Sbjct: 113 IGKEAFEL--IRAANPKVPIDRARFSAITKDEIVKSIKEATSLDFNLASAGESRQIIDLV 170
Query: 183 VGVAFTRF 190
G + TRF
Sbjct: 171 WGASLTRF 178
>gi|257075816|ref|ZP_05570177.1| DNA topoisomerase I [Ferroplasma acidarmanus fer1]
Length = 748
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+ S+ GH+ DFP ++DW S+ L + + +N + + + G ++++
Sbjct: 38 MVSLSGHILGADFPEEFKDWVKSDLDKLIDSNIIYKVTNQRAYSAL---KSFSGIDNIII 94
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
D DREGE I E ++ + + RA+FS++T +++ A NL++ N A +
Sbjct: 95 ATDYDREGELIGVEALKF----IEPGYTNIRRAKFSALTSQEVKDAFDNLLDVNYGLADS 150
Query: 173 VDARQEIDLKVGVAFTRF 190
AR+EIDL G TRF
Sbjct: 151 AKAREEIDLLWGAVLTRF 168
>gi|405982831|ref|ZP_11041142.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
gi|404389540|gb|EJZ84616.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
Length = 846
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 80 LFQAPVHKAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138
L AP+ K PK I R L A+ +++ D DREGE I + + C +VND
Sbjct: 118 LAYAPIEK---KPKEKDIIRSLKNLAKKSDEIIIATDFDREGELIGSDALSCMK-EVNDT 173
Query: 139 RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
V RAR+S++T+ +I A +LVE + + A A ++RQ+IDL G TR+ T
Sbjct: 174 A-PVFRARYSAITKDEIQHAFSHLVELDNDLAQAGESRQDIDLIWGAVLTRYLTIVKFAG 232
Query: 199 YGNLDS 204
YGN+ S
Sbjct: 233 YGNVRS 238
>gi|452211571|ref|YP_007491685.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452101473|gb|AGF98413.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 752
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 31 RKASTEVHEFDGMFLGSHAYIKVTSVVG---HVFRLDFPPAYQDWNASNPLDLFQAPVHK 87
R + +V+ ++ +GS + T+VVG H+ +DFP Y +W + DL A +
Sbjct: 28 RVSGVDVYRYE---IGSGENKQETAVVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEITT 84
Query: 88 AESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRAR 146
N K V + L +EA + + D DREGE I E + QVN + R R
Sbjct: 85 TPINRKIVTALKSLGKEA---DRVTIATDYDREGELIGVEALNIIK-QVN-PKIPFDRVR 139
Query: 147 FSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRF 206
+S++T K I A N + N A A +RQ IDL G A TR Y G L F
Sbjct: 140 YSAITPKAIEAAFSNPTNVDFNLADAGHSRQVIDLVWGAALTR----YISLAAGRLGKMF 195
Query: 207 ISL 209
+S+
Sbjct: 196 LSV 198
>gi|339444649|ref|YP_004710653.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
gi|338904401|dbj|BAK44252.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
Length = 850
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 80 LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDAR 139
L AP+ K + I R L A+ +++ D DREGE I + + C Q +
Sbjct: 117 LVYAPIKKLPK--EKEIIRSLKNLAKKADSVIIATDFDREGELIGSDALSC--IQEVNPT 172
Query: 140 RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
V RAR+S+ T+++I A NLVE + N A A +RQ+IDL G TR+ T Y
Sbjct: 173 APVSRARYSAFTKEEITHAFSNLVELDTNLASAGASRQDIDLIWGAVLTRYLTLVKFAGY 232
Query: 200 GNLDS 204
GN+ S
Sbjct: 233 GNVRS 237
>gi|253744105|gb|EET00358.1| DNA topoisomerase III [Giardia intestinalis ATCC 50581]
Length = 893
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 45/236 (19%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFL----GSHAYIKVTSVVGHVF 61
+L V EK S+A ++++LS ++ + E+ + G + V GH+
Sbjct: 5 ILCVTEKNSVAAEVSSILSKRSYSKKQLAQYFSEYRFIHPAEEHGPNQQYVVVHAQGHML 64
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
L+ Y+ W P DLF VH E+ V L A L+L LD DREGE
Sbjct: 65 ELEPDEGYE-WGNCAPSDLFTCGVHFKEN--AVFRRSVLKPNAAETNVLILMLDADREGE 121
Query: 122 NICFEVIE--CTGFQVN---DARRK---------------------------------VH 143
NI +++IE C+ N D R V
Sbjct: 122 NIGYDIIEIFCSVLPANTLLDIRPANLPKIRSPTEHILRHILSADHTPAHAPNARTIIVR 181
Query: 144 RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
RARF +T ++ A+ N + N AVD RQ DL++G + TR QT + +
Sbjct: 182 RARFFGLTYSELTAAIYNAGPIDMNVVDAVDVRQFTDLRLGYSITRLQTDKLRSSF 237
>gi|257790892|ref|YP_003181498.1| DNA topoisomerase type IA central domain-containing protein
[Eggerthella lenta DSM 2243]
gi|317488397|ref|ZP_07946951.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325830508|ref|ZP_08163961.1| DNA topoisomerase [Eggerthella sp. HGA1]
gi|257474789|gb|ACV55109.1| DNA topoisomerase type IA central domain protein [Eggerthella lenta
DSM 2243]
gi|316912501|gb|EFV34056.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325487417|gb|EGC89858.1| DNA topoisomerase [Eggerthella sp. HGA1]
Length = 849
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 80 LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDAR 139
L AP++K + I R L A+ +++ D DREGE I + + C Q +
Sbjct: 117 LVYAPINKLPK--EKEIIRSLKNLAKKADSVIIATDFDREGELIGSDALSC--IQEVNPT 172
Query: 140 RKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKY 199
V RAR+S+ T+++I A NLVE + N A A +RQ+IDL G TR+ T Y
Sbjct: 173 APVSRARYSAFTKEEITHAFDNLVELDVNLASAGASRQDIDLIWGAVLTRYLTLVKFAGY 232
Query: 200 GNLDS 204
GN+ S
Sbjct: 233 GNVRS 237
>gi|255514071|gb|EET90334.1| DNA topoisomerase I [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 727
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYT----RKASTEVHEFDGMFLGSHAYIKVTSVVGH 59
+K L++AEKPS+AL IA L G+ + R + DG I V + VGH
Sbjct: 1 MKTLIIAEKPSVALRIAIALGNGQHKSVRNGRITYYTMPHGDGE-------IYVAAAVGH 53
Query: 60 VFRLD-------FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+F + +P +W S + + + + L QE C +
Sbjct: 54 LFTIRQKGKERAYPITEIEWAPS-----YLTNKRSEYTKEYLFTLKKLAQE---CSTFIN 105
Query: 113 WLDCDREGENICFEVI-ECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
D D EG I +I E +G Q R +FS+ T KD+L + G+L+ P+ N
Sbjct: 106 ACDYDIEGTVIGTNIIKELSGLQAEAIGSVSKRMKFSTTTPKDLLDSFGSLLPPDINNFY 165
Query: 172 AVDARQEIDLKVGVAFTRFQTTYF--QGKYGNL 202
A +AR +D G+ F+R T+ G+Y L
Sbjct: 166 AGEARHMLDWLWGINFSRALTSALSSSGQYKQL 198
>gi|91772172|ref|YP_564864.1| DNA topoisomerase I [Methanococcoides burtonii DSM 6242]
gi|91711187|gb|ABE51114.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 743
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEK A IA +L+ + + S + F+ + I V + GH+ +LDFP
Sbjct: 3 LIIAEKHIAAKRIAKILAPKEPKQVRVSG-MDTFEYKNPDAEDRIIVMGLSGHIVQLDFP 61
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENICF 125
AY +W + +L A V ++ K V R L +EA H+ + D DREGE I
Sbjct: 62 KAYNNWQKIDANELIDAEVITTPTHVKIVAALRKLGKEAT---HVTIATDYDREGELIGV 118
Query: 126 EVIECTGFQVNDARRKVH------RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
E + RKV+ R +S++T+ +I A N + + A A +RQ I
Sbjct: 119 EALNII--------RKVNPDVEFDRVFYSAITKTEIEGAFANPASIDFDLADAGHSRQVI 170
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
DL G + TR Y G L F+S+
Sbjct: 171 DLVWGASLTR----YLSISAGRLGKLFLSV 196
>gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1]
gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1]
Length = 752
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 31 RKASTEVHEFDGMFLGSHAYIKVTSVVG---HVFRLDFPPAYQDWNASNPLDLFQAPVHK 87
R + +V+ ++ +GS + T+VVG H+ +DFP Y +W + DL A +
Sbjct: 28 RVSGVDVYRYE---IGSGENRQETAVVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEITT 84
Query: 88 AESNPK-VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRAR 146
N K V + L +EA + + D DREGE I E + +VN + R R
Sbjct: 85 TPINRKIVTALKSLGKEA---DRVTIATDYDREGELIGVEALNIIK-KVN-PKIPFDRVR 139
Query: 147 FSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRF 206
+S++T K I A N + N A A +RQ IDL G A TR Y G L F
Sbjct: 140 YSAITPKAIEAAFSNPTNVDFNLADAGHSRQVIDLVWGAALTR----YISLAAGRLGKMF 195
Query: 207 ISL 209
+S+
Sbjct: 196 LSV 198
>gi|328955028|ref|YP_004372361.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
gi|328455352|gb|AEB06546.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
Length = 869
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
VL++AEK A IA +L+ G T K ST+V+ F + ++ + + GH+ D
Sbjct: 2 VLVIAEKNIAAKKIAQLLADGAPKTDKVYSTQVYRFS---VDGEEWVSM-GLAGHILAPD 57
Query: 65 FP-------------------------------PAY--------------QDWNASNPLD 79
FP P Y + W +
Sbjct: 58 FPEAILFDAERGWYSLTDDGEILPADVPDGLARPPYDSKRRPYLPDGINIKSWKVDSLPY 117
Query: 80 LFQAPV--HKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVND 137
L APV H AE I R L A+ +++ D DREGE I + + D
Sbjct: 118 LTWAPVVKHPAEK----EIIRVLKNLAKKADSIIIATDFDREGELIGADALSQVREVAPD 173
Query: 138 ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQG 197
V RAR+S++ + ++ A NLVE +R+ A A ++RQ IDL G TR+ T G
Sbjct: 174 V--PVARARYSALIKGEVCGAFDNLVELDRDLADAGESRQHIDLIWGAVLTRYLTLAKFG 231
Query: 198 KYGNLDS 204
+GN+ S
Sbjct: 232 GFGNVRS 238
>gi|315427545|dbj|BAJ49146.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 608
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 31/192 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
++++VAEK S+A +I V+S K A V+SV GH+ D
Sbjct: 14 QLIIVAEKASVARAIKAVVSAAK---------------------ANAVVSSVRGHMMEAD 52
Query: 65 FPPAYQDWNASNPLDL--FQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
P Y+ W A +P ++ + V K N + L + G LV+ D D EGE
Sbjct: 53 LPDGYE-WGAKHPFEIIKLRKVVDKISDN---RVFEQLVKVFSRGGVLVIATDNDSEGEL 108
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--RQEID 180
I +E+++ +V V+R RF+SV +++ ++ NL E N A RQ D
Sbjct: 109 IGYEILQVYR-RVTGGEPVVYRMRFNSVDRRELFASLRNL-EKGLNMRWVEKARFRQIFD 166
Query: 181 LKVGVAFTRFQT 192
L G AFTR T
Sbjct: 167 LVTGAAFTRLLT 178
>gi|147862218|emb|CAN82589.1| hypothetical protein VITISV_038261 [Vitis vinifera]
Length = 617
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 3 PLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIK 52
P K+LMVA KP+ ALSIA+ LS G + TR +STEVHEF+G F GS+A K
Sbjct: 227 PHKILMVAXKPNSALSIASALSSGHMSTRCSSTEVHEFNGTFRGSNAQYK 276
>gi|402828130|ref|ZP_10877021.1| DNA topoisomerase I [Slackia sp. CM382]
gi|402286731|gb|EJU35193.1| DNA topoisomerase I [Slackia sp. CM382]
Length = 836
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 68 AYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEV 127
A W L AP+ K + I R L A+ +++ D DREGE I +
Sbjct: 104 ALNTWKMDTLPYLTYAPIEKLPK--EKDIIRSLKNLAKKADEIIIATDFDREGELIGSDA 161
Query: 128 IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAF 187
+ C Q + V RAR+S+ T+ +I A +LV + N A A ++RQ+IDL G
Sbjct: 162 LSC--IQEVNPDAPVARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAVL 219
Query: 188 TRFQTTYFQGKYGNLDS 204
TRF T YGN+ S
Sbjct: 220 TRFLTIVKFAGYGNVRS 236
>gi|417412874|gb|JAA52796.1| Putative dna topoisomerase iii alpha, partial [Desmodus rotundus]
Length = 837
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 141 KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
+V RARFS +T + I A NL EP++ + AVD RQE+DL++G AFTRFQT Q
Sbjct: 10 QVLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQ 65
>gi|256827343|ref|YP_003151302.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
gi|256583486|gb|ACU94620.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
Length = 834
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 80 LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDAR 139
L AP+ K + I R L A+ +V+ D DREGE I + + Q+++A
Sbjct: 117 LTYAPIEKLPK--EKDIIRSLKNLAKKADSVVIATDFDREGELIGSDALS----QIHEAN 170
Query: 140 R--KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQG 197
V RAR+S+ T+++I A NLV+ + N A A +RQ+IDL G TR+ TT
Sbjct: 171 PLLPVSRARYSAFTKQEITTAFDNLVQLDGNLAQAGASRQDIDLIWGAVLTRYLTTVKFA 230
Query: 198 KYGNLDS 204
YGN+ S
Sbjct: 231 GYGNVRS 237
>gi|282165000|ref|YP_003357385.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157314|dbj|BAI62402.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 679
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 79/184 (42%), Gaps = 11/184 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK A IA +L + S E H ++ A V + GH+ LDFP
Sbjct: 3 LIITEKHDAANKIAGILFPDR------SAERHGGVTVYRSKAAGAAVVGLAGHIVALDFP 56
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
Y W+A P L AP+ + K I L A + + D DREGE I E
Sbjct: 57 GEYSRWSAHPPSTLIGAPIVSVPT--KKDIIGALASLAPSATKVTIATDYDREGELIGVE 114
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+VH +SS +++I +A V + N A A + RQEIDL G A
Sbjct: 115 AYNIIHRLTKAPFERVH---YSSFAKQEIEQAFARPVPLDFNLAAAGECRQEIDLVWGAA 171
Query: 187 FTRF 190
TRF
Sbjct: 172 LTRF 175
>gi|269217134|ref|ZP_06160988.1| DNA topoisomerase [Slackia exigua ATCC 700122]
gi|269129271|gb|EEZ60356.1| DNA topoisomerase [Slackia exigua ATCC 700122]
Length = 838
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 68 AYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEV 127
A W L AP+ K + I R L A+ +++ D DREGE I +
Sbjct: 106 ALNTWKMDTLPYLTYAPIEKLPK--EKDIIRSLKNLAKKADEIIIATDFDREGELIGSDA 163
Query: 128 IECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAF 187
+ C Q + V RAR+S+ T+ +I A +LV + N A A ++RQ+IDL G
Sbjct: 164 LSC--IQEVNPDVPVARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAVL 221
Query: 188 TRFQTTYFQGKYGNLDS 204
TRF T YGN+ S
Sbjct: 222 TRFLTIVKFAGYGNVRS 238
>gi|119576051|gb|EAW55647.1| topoisomerase (DNA) III alpha, isoform CRA_b [Homo sapiens]
Length = 171
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHK 87
DF ++ W + NPL LF+A + K
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEK 120
>gi|357489373|ref|XP_003614974.1| DNA topoisomerase [Medicago truncatula]
gi|355516309|gb|AES97932.1| DNA topoisomerase [Medicago truncatula]
Length = 302
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 55 SVVGHVFRLDFPPAYQD-WNASNPLDLF--QAPVHKAESNPKVHICRHLNQEARGCGHLV 111
S GH+ F + WN N L + V ++ K+ + L EA+ C LV
Sbjct: 12 STNGHIKETKFEKQSDNVWNEGNTKKLLSPETVVVRSVLGDKIDVENKLRDEAKKCKWLV 71
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
LW D D EGE I +EV E Q + V RARFSS+ + + ++ + N L
Sbjct: 72 LWFDNDPEGEYIAYEVHEICVQQ--NYEIIVKRARFSSLNPTAVDATIKTSLD-DLNPCL 128
Query: 172 --AVDARQEIDLKVGVAFTRFQT 192
AV R+E+D K G +TRFQ+
Sbjct: 129 LDAVAYRKEVDFKTGRVWTRFQS 151
>gi|257784895|ref|YP_003180112.1| DNA topoisomerase type IA central domain-containing protein
[Atopobium parvulum DSM 20469]
gi|257473402|gb|ACV51521.1| DNA topoisomerase type IA central domain protein [Atopobium
parvulum DSM 20469]
Length = 837
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 100/246 (40%), Gaps = 55/246 (22%)
Query: 6 VLMVAEKPSIALSIATVLS-GGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+L+V EK A IA +LS GK K +T V+ F G Y+ + + GH+ +
Sbjct: 2 ILVVTEKNDAAQQIARLLSESGKPEADKVYNTPVYRF---RRGGEDYVAI-GLRGHILQP 57
Query: 64 DFP-------------------------------PAYQ--------------DWNASNPL 78
DFP P Y+ W +
Sbjct: 58 DFPLALKFDKEEGWYGETAEGEHLPADVPDGLERPPYKVKRKPFMADGVDLKGWKIPSLP 117
Query: 79 DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138
L APV K + + I R L A+ +++ D DREGE I + + VN
Sbjct: 118 YLIWAPVDKQPA--EKEIIRALKNLAKKAESVIIGTDFDREGELIGSDALAQV-LSVN-P 173
Query: 139 RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
V RAR+S+ T+ +I A NLV+ + N A A ++RQ IDL G TR+ TT G
Sbjct: 174 NLAVFRARYSAFTKTEIETAFNNLVDLDYNLAAAGESRQYIDLIWGAVLTRYLTTARFGG 233
Query: 199 YGNLDS 204
GN S
Sbjct: 234 LGNTRS 239
>gi|355753822|gb|EHH57787.1| DNA topoisomerase 3-alpha, partial [Macaca fascicularis]
Length = 839
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 141 KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQ 196
+V RARFS +T + A NL EP++ + AVD RQE+DL++G AFTRFQT Q
Sbjct: 10 QVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQ 65
>gi|381211521|ref|ZP_09918592.1| DNA topoisomerase III [Lentibacillus sp. Grbi]
Length = 719
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 29/203 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ IA VL+ T+K + FL YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDIARVLN----CTKKGNG--------FLEGSKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICR-HLNQEARGCGHLVLWLDCD 117
P Y+D W DL P V +S + ++ + LN+ + G +V+ D
Sbjct: 50 DPEMYEDKWKTWRLDDLPMLPNRLKLVVIKKSGKQFNVVKTQLNR--KDAGDVVIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--A 175
REGE + +IE +VN + V R SSVT+K I + NL + E L A
Sbjct: 108 REGELVARWIIEKA--RVN---KSVKRLWISSVTDKAIREGFKNLKPGKQYENLYASAVA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR TT F +
Sbjct: 163 RSEADWYVGLNATRALTTKFNAQ 185
>gi|148548134|ref|YP_001268236.1| DNA topoisomerase III [Pseudomonas putida F1]
gi|397696966|ref|YP_006534849.1| DNA topoisomerase III [Pseudomonas putida DOT-T1E]
gi|148512192|gb|ABQ79052.1| DNA topoisomerase III [Pseudomonas putida F1]
gi|397333696|gb|AFO50055.1| DNA topoisomerase III [Pseudomonas putida DOT-T1E]
Length = 654
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL H DG G + + +T VGH+ P
Sbjct: 3 LFICEKPSQARDIARVLQAS-----------HRADGCLKGQN--VTITWCVGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGENIC 124
Y D+ + DL P K + PKV + ++Q R C +V+ D DREGE I
Sbjct: 50 ETYGDYKRWSLDDLPIIPSQWKLVAKPKVAGQLKVISQLLRTCSEVVIATDADREGEMIA 109
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQEIDLK 182
E++E +Q + R S++ E I +A+G L L AR D
Sbjct: 110 REILERCQYQ-----GPILRLWLSALDEASIRRALGALRPGEETLPLYHCALARSRADWL 164
Query: 183 VGVAFTRF 190
VG+ +R
Sbjct: 165 VGINLSRL 172
>gi|266620014|ref|ZP_06112949.1| DNA topoisomerase III [Clostridium hathewayi DSM 13479]
gi|288868374|gb|EFD00673.1| DNA topoisomerase III [Clostridium hathewayi DSM 13479]
Length = 740
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 31/220 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G YI VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARVLRCGK-----------NLNGALEGDQ-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ P Y+ W + P+ D F+ V K + L + + G +++ D
Sbjct: 48 ADPEDYDPKYKTWRMEDLPMMPDQFKLEVIKQTGKQFSAVKAQLQR--KDTGEIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + ++E G R+ + R SSVT+K I L + + L A
Sbjct: 106 GREGELVARLILEKAG-----CRKPIKRLWISSVTDKAIKDGFAKLKNGHEYDNLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
R E D VG+ TR T + + G + + ++++ S
Sbjct: 161 CRAEADWLVGINATRALTCKYNAQLSCGRVQTPTLAIIAS 200
>gi|409095789|ref|ZP_11215813.1| DNA topoisomerase I [Thermococcus zilligii AN1]
Length = 1233
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEKP++A IA L+ GK RK+ +V ++ F I V VGH+F L
Sbjct: 3 TLIIAEKPNVARKIAHALAEGKP-VRKSIGKVSYYE--FTRDGKRIIVAPAVGHLFSL-- 57
Query: 66 PPAYQDWNASNPL-DLFQAPVHKAESNP---KVHICRHLNQEARGCGHLVLWLDCDREGE 121
A +D P+ D+ PV+ AE K +I R L A+ ++ D D EGE
Sbjct: 58 --APRDKTYGYPVFDIEWVPVYVAEKGKGYAKDYI-RALAVLAKQADEFIVACDYDTEGE 114
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEI 179
I + ++ + K R +FS++T+KDIL A NL EP N +A AR +
Sbjct: 115 VIGYTALK---YACGVDPSKAKRMKFSALTKKDILNAWYNL-EPTINFGMADAGIARHVL 170
Query: 180 DLKVGVAFTR 189
D GV +R
Sbjct: 171 DWYWGVNLSR 180
>gi|225387636|ref|ZP_03757400.1| hypothetical protein CLOSTASPAR_01406 [Clostridium asparagiforme
DSM 15981]
gi|225046252|gb|EEG56498.1| hypothetical protein CLOSTASPAR_01406 [Clostridium asparagiforme
DSM 15981]
Length = 735
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 41/210 (19%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL G+ + +G G AYI VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARVLKCGR-----------QINGAIEGG-AYI-VTWGLGHLVEL 47
Query: 64 DFP----PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHL 110
P P Y++W + L + P K+ + R ++ + G +
Sbjct: 48 ADPEAYDPKYKEWKMED-LPMMPEPF-------KLEVIRQTTKQYQAVKAQIHRKDVGEI 99
Query: 111 VLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
++ D REGE + +++ G Q + + R SSVT+K I + NL + E
Sbjct: 100 IIATDAGREGELVARLILKKAGSQ-----KPLKRLWISSVTDKAIREGFANLRDGRDYEN 154
Query: 171 L--AVDARQEIDLKVGVAFTRFQTTYFQGK 198
L A R E D VG+ TR T + +
Sbjct: 155 LYDAAMCRAEADWLVGINATRALTCKYNAQ 184
>gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
Length = 771
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 53 VTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
V + GH+ +DFP Y +W L A + N K I L + + +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVESKTLINADIITTPINRK--IVTALKGLGKKASRVTI 107
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
D DREGE I E + QVN R R+S++T K I A N + + N A A
Sbjct: 108 ATDYDREGELIGVEALNIIK-QVN-PDVPFDRVRYSAITPKAIEAAFSNATDVDFNLADA 165
Query: 173 VDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+RQ IDL G A TR Y G L F+S+
Sbjct: 166 GHSRQVIDLVWGAALTR----YISLAAGRLGKMFLSV 198
>gi|221195634|ref|ZP_03568688.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
gi|221184400|gb|EEE16793.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
Length = 842
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 101/246 (41%), Gaps = 55/246 (22%)
Query: 6 VLMVAEKPSIALSIATVLS-GGKLYTRKA-STEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+L+V EK A IA +LS GK K +T V+ F G Y+ + + GH+ +
Sbjct: 2 ILIVTEKNDAAQQIARLLSESGKPEADKVYNTPVYRFRK---GGEEYVTI-GLRGHILQP 57
Query: 64 DFP-------------------------------PAYQD--------------WNASNPL 78
DFP P Y++ W +
Sbjct: 58 DFPTQLLFDADEGWYGATEDGEHIPADVPDGLARPPYKEKRKPYLKAGIDLKGWKIPSLP 117
Query: 79 DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138
L APV K + + I R L A+ +++ D DREGE I + + V A
Sbjct: 118 YLIWAPVEKEPA--EKEIIRSLKNLAKKSDAVIIATDFDREGELIGSDALAQV-LSVK-A 173
Query: 139 RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
V RAR+S+ T+ +I A NLVE + + A A ++RQ IDL G TR+ T G
Sbjct: 174 DLPVSRARYSAFTKYEIDTAFNNLVELDYDLAAAGESRQFIDLIWGAVLTRYLTCVRFGG 233
Query: 199 YGNLDS 204
+GN S
Sbjct: 234 FGNTRS 239
>gi|320101228|ref|YP_004176820.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
gi|319753580|gb|ADV65338.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
Length = 691
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
+VL++AEKP A IA LS G + R S V+E + + I V S VGH++ L+
Sbjct: 21 RVLVIAEKPKAARKIAEALSPGYVTRRIGSIPVYEINAY----GSMILVASSVGHLYELN 76
Query: 65 -----FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH----LNQEARGCGHLVLWLD 115
+P +W P H NP R L + RG + V D
Sbjct: 77 TGVKGYPVYSYEW----------VPSHLV--NPGKRHAREYLEVLKKLCRGVDYYVNACD 124
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA 175
D EG I + +I+ G + K RA+FSS+T +++ +A NL + + A
Sbjct: 125 YDIEGSVIGYLIIKFNGDE-----EKALRAKFSSLTREELRQAFNNLAKLDYEMIEAGLC 179
Query: 176 RQEIDLKVGVAFTR 189
R E+D G+ +R
Sbjct: 180 RHELDWLWGINVSR 193
>gi|296109817|ref|YP_003616766.1| DNA topoisomerase I [methanocaldococcus infernus ME]
gi|295434631|gb|ADG13802.1| DNA topoisomerase I [Methanocaldococcus infernus ME]
Length = 776
Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 20/188 (10%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A IA L K +K +V ++ + G I V S VGH+F L
Sbjct: 2 ILIIAEKPSVAKKIANALGKAK---KKKIYDVPYYEVDYNGKK--IVVASAVGHLFTL-- 54
Query: 66 PPAYQDWNASNP-LDLFQAP--VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
++ + S P ++ AP + K +S K +I R L + ++ + + D D EGE
Sbjct: 55 --VEKNKSFSYPTFEIKWAPAYIEKGKSYVKNYI-RALKELSKYADEIYIATDYDIEGEL 111
Query: 123 ICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I + ++ C G R K R +FSS+T+++I+KA N + + A ++R +D
Sbjct: 112 IGYHALKFCCG------RDKGKRMKFSSLTKREIIKAFENPISMDYGLVDAGESRHIVDW 165
Query: 182 KVGVAFTR 189
G+ +R
Sbjct: 166 YFGINLSR 173
>gi|341581825|ref|YP_004762317.1| DNA topoisomerase I [Thermococcus sp. 4557]
gi|340809483|gb|AEK72640.1| DNA topoisomerase I [Thermococcus sp. 4557]
Length = 719
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 18/200 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKP++A IA L+ GK RK +V ++ F I V VGH+F L
Sbjct: 4 LIIAEKPNVARKIAYALAEGKP-VRKTIGKVGYYE--FTRDGKRIIVAPAVGHLFSL--A 58
Query: 67 PAYQDWNASNPL-DLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
P + + P+ D+ PV+ AE S K +I + L A+ V+ D D EGE
Sbjct: 59 PKVKTYGY--PIFDIEWVPVYVAEKGKSYAKDYI-KALATLAKRADEFVVACDYDTEGEV 115
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEID 180
I + ++ ++ +R K R +FS++T+KD+LKA NL EP N +A AR +D
Sbjct: 116 IGYTALK-YACGIDPSRAK--RMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHVLD 171
Query: 181 LKVGVAFTRFQTTYFQGKYG 200
GV +R T+ + G
Sbjct: 172 WYWGVNLSRALTSAIKRASG 191
>gi|374327011|ref|YP_005085211.1| DNA topoisomerase [Pyrobaculum sp. 1860]
gi|356642280|gb|AET32959.1| DNA topoisomerase (topA) [Pyrobaculum sp. 1860]
Length = 598
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L+VAEK S+A +IA L R V+ F + G A + GH+ DF
Sbjct: 2 ILIVAEKRSVAQAIAKYLGRSYRVQRIHGVPVYSFS--YGGREA--AALGLSGHIMDFDF 57
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICF 125
W P +LF A + + L A + L LD D EGE I +
Sbjct: 58 AARQNVWTWLPPEELFNATPLLVVRREALDYVKALRALAAKADEVYLALDADVEGEAIAY 117
Query: 126 EVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGV 185
E + + R + R F++VT ++I A + + + V R +IDL +G
Sbjct: 118 EA--ALVVRSVNKRAPIRRVLFNAVTPREITAAFQRPTKLDLKKVEKVFTRMQIDLTLGA 175
Query: 186 AFTRFQT 192
AFTRF T
Sbjct: 176 AFTRFLT 182
>gi|57505990|ref|ZP_00371914.1| DNA topoisomerase III [Campylobacter upsaliensis RM3195]
gi|57015790|gb|EAL52580.1| DNA topoisomerase III [Campylobacter upsaliensis RM3195]
Length = 723
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 26/204 (12%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKP +A +IA LSG ++ R+ S H G + +HA+ GH+ L P
Sbjct: 3 LFIAEKPELARAIAEGLSG-EIKERQRS---HIIKGENIITHAF-------GHILELKKP 51
Query: 67 ----PAYQDWNASN-PLDLFQ--APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY+ W+ ++ PL+L + + KAE+ ++ + + +AR +V D D E
Sbjct: 52 ELYNKAYEKWSLNDLPLNLPRPLKRIAKAEAKNQLSVIVNFINDAR-VKEIVHCGDADEE 110
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
G+ + E++ + N+ + V R + +T K I KA+ N + L+ AR
Sbjct: 111 GQILIDEIL---AYARNN--KPVMRCLINDLTPKAIAKAIKEKQSNNEFKNLSASGFARN 165
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGN 201
E D VG+ FTR T Q GN
Sbjct: 166 EADFLVGLNFTRLYTLLNQNNGGN 189
>gi|390938860|ref|YP_006402598.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
gi|390191967|gb|AFL67023.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
Length = 678
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL- 63
++L++AEKP A IA+ LS R S ++E D S VGH+++L
Sbjct: 13 RILVIAEKPKAAKKIASALSPTHTMKRIGSITIYEVDSYSSSIII----ASSVGHLYQLH 68
Query: 64 ----DFPPAYQDWNASNPLDLFQAPVHKAESNPKV--HICRHLNQEARGCGHLVLWLDCD 117
+P +W P+H A+ + K L + RG + V D D
Sbjct: 69 TSLRGYPVYSYEW----------IPLHLADPSKKYIREYLEVLGKLCRGVDYYVNACDYD 118
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EG I + +I+ G + RK RARFSS+T +++ KA NL + A R
Sbjct: 119 IEGSVIGYLIIKFNGDE-----RKAFRARFSSLTIEELRKAFNNLTRLDYEMIEAGLCRH 173
Query: 178 EIDLKVGVAFTR 189
E+D G+ +R
Sbjct: 174 ELDWIWGINVSR 185
>gi|366162462|ref|ZP_09462217.1| DNA topoisomerase III [Acetivibrio cellulolyticus CD2]
Length = 721
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 29/203 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA VL+ ++ FL YI VT +GH+ L
Sbjct: 3 KTLVLAEKPSVARDIAKVLNS------------NQKGNGFLAGPKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P +Y D + N DL P V E++ + + ++L LV+ D R
Sbjct: 50 DPESYSDRYKTWNIEDLPMLPKKMELVVIRETSKQFGVVKNLMHRD-DIDELVIATDSGR 108
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVDA 175
EGE + +I GF R+ + R SS T+K I NL +P R N + +
Sbjct: 109 EGELVARWIIIKAGF-----RKPIKRLWISSQTDKAIKDGFANL-KPARDYDNLFFSAQS 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T F +
Sbjct: 163 RSEADWLVGLNVTRALTCKFNAQ 185
>gi|390960560|ref|YP_006424394.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
gi|390518868|gb|AFL94600.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
Length = 716
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKP++A IA L+ GK RK +V ++ F I V VGH+F L
Sbjct: 4 LIIAEKPNVARKIAYALAEGKP-VRKTIGKVSYYE--FTRDGKRIIVAPAVGHLFSL--A 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAESN---PKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
P + + D+ PV+ AE K +I + L A+ V+ D D EGE I
Sbjct: 59 PKTKTYGYP-VFDIEWVPVYVAEKGKGYAKDYI-KALATLAKRADEFVVACDYDTEGEVI 116
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEIDL 181
+ ++ V+ R K R +FS++T+KD+LKA NL EP N +A AR +D
Sbjct: 117 GYTALK-YACGVDPTRAK--RMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHVLDW 172
Query: 182 KVGVAFTRFQTTYFQGKYG 200
GV +R T+ + G
Sbjct: 173 YWGVNLSRALTSAIKRASG 191
>gi|57641026|ref|YP_183504.1| DNA topoisomerase I [Thermococcus kodakarensis KOD1]
gi|57159350|dbj|BAD85280.1| DNA topoisomerase I [Thermococcus kodakarensis KOD1]
Length = 1229
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEKP++A IA L+ GK RK +V ++ F + V VGH+F L
Sbjct: 3 TLIIAEKPNVARKIAYALAEGKP-VRKTIGKVSYYE--FTRDGKKVIVAPAVGHLFSL-- 57
Query: 66 PPAYQDWNASNPL-DLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
A + P+ D+ PV+ AE S K +I + L A+ V+ D D EGE
Sbjct: 58 --APKTKTYGYPVFDIEWVPVYVAEKGKSYAKDYI-KALATLAKQADEFVVACDYDTEGE 114
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEI 179
I + ++ + K R +FS++T+KD+LKA N+ EP N +A AR +
Sbjct: 115 VIGYTALK---YACGVDPSKAKRMKFSALTKKDLLKAWYNM-EPTINFGMADAGIARHVL 170
Query: 180 DLKVGVAFTRFQTT 193
D GV +R T+
Sbjct: 171 DWYWGVNLSRALTS 184
>gi|240103365|ref|YP_002959674.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
gi|239910919|gb|ACS33810.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
Length = 712
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 14/198 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKP++A IA L+ GK RK +V ++ F + V VGH+F L
Sbjct: 4 LIIAEKPNVARKIAYALAEGKP-VRKTIGKVSYYE--FTRDGKKVIVAPAVGHLFSL--A 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAES--NPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
P + + D+ PV+ AE N + L A+ ++ D D EGE I
Sbjct: 59 PKTKTYGYP-VFDIEWVPVYVAEKGKNYAKDYIKALATLAKRADEFIVACDYDTEGEVIG 117
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEIDLK 182
+ ++ + K R +FS++T+KD+LKA NL EP N +A AR +D
Sbjct: 118 YTALK---YACGVDPSKAKRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHVLDWY 173
Query: 183 VGVAFTRFQTTYFQGKYG 200
GV +R T+ + G
Sbjct: 174 WGVNLSRALTSAIKRASG 191
>gi|424067807|ref|ZP_17805263.1| DNA topoisomerase III in PFGI-1-like cluster [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
gi|424072436|ref|ZP_17809857.1| DNA topoisomerase III inPFGI-1-like cluster [Pseudomonas syringae
pv. avellanae str. ISPaVe037]
gi|407997733|gb|EKG38167.1| DNA topoisomerase III inPFGI-1-like cluster [Pseudomonas syringae
pv. avellanae str. ISPaVe037]
gi|407999822|gb|EKG40193.1| DNA topoisomerase III in PFGI-1-like cluster [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
Length = 655
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL + DG +G+ + VT +GH+ P
Sbjct: 3 LFLCEKPSQGRDIAKVLGANR-----------RGDGCLIGTDS--TVTWCIGHLLETASP 49
Query: 67 PAYQDWNASNPLD-LFQAPVH-KAESNPKV----HICRHLNQEARGCGHLVLWLDCDREG 120
AY D S LD L P + E PK I +HL EA G +V+ D DREG
Sbjct: 50 QAYGDQYKSWSLDHLPIIPAQWQVEVKPKTAAQFKIIKHLLSEASG---VVIATDADREG 106
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E I E++E + R V R S++ E I KA+ +L L + AR
Sbjct: 107 EMIARELLELCQY-----RGPVQRLWLSALNEASIRKALSSLKSGQETFPLYHSALARSR 161
Query: 179 IDLKVGVAFTRFQT 192
D +G+ +R T
Sbjct: 162 ADWLIGMNLSRLFT 175
>gi|237749118|ref|ZP_04579598.1| DNA topoisomerase III [Oxalobacter formigenes OXCC13]
gi|229380480|gb|EEO30571.1| DNA topoisomerase III [Oxalobacter formigenes OXCC13]
Length = 879
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 35/202 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA L G +T++ G + S Y+ +TS VGH+ +
Sbjct: 3 KTLIIAEKPSVANDIAKSLGG---FTKQ---------GDYFESDQYV-LTSAVGHLLEIR 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQ--EARGCGHLVLWL 114
P Y+ W+ +N P D P+ K ES K+ LN+ + + ++
Sbjct: 50 APEEYEVKRGKWSFANLPVIPPDFALEPIAKTESRLKM-----LNKLIKRKDISEIINAC 104
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D REGE + F +I Q A++ V R S+T I + +L + LA
Sbjct: 105 DAGREGE-LIFRLIA----QYTKAKQPVKRLWLQSMTPNAIREGFKHLRGDEEMQPLAKA 159
Query: 175 A--RQEIDLKVGVAFTRFQTTY 194
A R E D +G+ TR T +
Sbjct: 160 ARSRSEADWLIGINGTRAMTAF 181
>gi|51246469|ref|YP_066353.1| DNA topoisomerase III [Desulfotalea psychrophila LSv54]
gi|50877506|emb|CAG37346.1| probable DNA topoisomerase III [Desulfotalea psychrophila LSv54]
Length = 820
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+L++AEKPS+A +A VL GK +K E S ++I V+ VGH+ L
Sbjct: 4 KILIIAEKPSVAGDLAKVLP-GKFTKQKTHYE----------SDSHI-VSYAVGHLVSLC 51
Query: 65 FP----PAYQDWNASNPLDLFQAPVHKAESNPKVHI--CRHLNQEARGCGHLVLWLDCDR 118
+P P YQ W +N L ++ KA N K + + L + + ++ D R
Sbjct: 52 YPEEIDPIYQKWGLANLPILPESFPLKAVENTKSQLNALKKLIRR-KDVTEIINACDAGR 110
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE + F+ I + + A++ + R S+T + I K NL E + ++L A R
Sbjct: 111 EGE-LIFKYILKYVWNTSVAKKTIKRLWLQSMTAESIKKGFNNLRENDTMQSLEDAALCR 169
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
E D +G+ TR T + K G
Sbjct: 170 SESDWLIGLNATRALTGFNSRKGG 193
>gi|315639461|ref|ZP_07894619.1| DNA topoisomerase TopB [Campylobacter upsaliensis JV21]
gi|315480473|gb|EFU71119.1| DNA topoisomerase TopB [Campylobacter upsaliensis JV21]
Length = 724
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 26/204 (12%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKP +A +IA LS G+L R+ S H G + +HA+ GH+ L P
Sbjct: 3 LFIAEKPELARAIADGLS-GELKERQRS---HIIKGENIITHAF-------GHILELAKP 51
Query: 67 ----PAYQDWNASN-PLDLFQ--APVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY+ WN S+ PL L + V K E+ ++++ + +AR +V D D E
Sbjct: 52 ESYNKAYEKWNLSDLPLKLARPLKRVAKMEAKTQLNLIINFINDAR-VKEIVHCGDADEE 110
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMG--NLVEPNRNEALAVDARQ 177
G+ + E++ + N + V RA + +T K I KA+ E N + + AR
Sbjct: 111 GQILIDEIL---AYARNT--KPVFRALINDITPKAIAKAINEKKANEEFSNLSQSGFARS 165
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGN 201
E D VG+ FTR T Q G+
Sbjct: 166 EADFLVGLNFTRLYTLLNQKNGGS 189
>gi|380083459|ref|YP_005351473.1| hypothetical protein PZB18_p07 [Enterococcus faecium]
gi|359465437|dbj|BAL40907.1| hypothetical protein [Enterococcus faecium]
Length = 704
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 17/202 (8%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ +++AEKP AT L+G + +EF+ G + VT +GH+ L
Sbjct: 1 MGTVILAEKPDQGKKFATALAGKTPVNKGGK---YEFESEVFG---HTIVTWGIGHLVGL 54
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---ARGC----GHLVLWLDC 116
P Y+ DL P E+ + + + +Q+ + C +++ D
Sbjct: 55 SLPEKYEWLPNKEKWDLANLPFLPKENELRYEVSKGKSQQYSTVKSCLENADMIIIATDP 114
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
DREGENI + + + ++ + R + R +S+ + +ILK NL E L +
Sbjct: 115 DREGENIAYNIFKLCKKKIFE--RPIKRLWINSLVKTEILKGFKNLREAEETVDLFKEAN 172
Query: 175 ARQEIDLKVGVAFTRFQTTYFQ 196
ARQ D VG+ +T T Q
Sbjct: 173 ARQIADYLVGMNYTELFTLKLQ 194
>gi|325968322|ref|YP_004244514.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
gi|323707525|gb|ADY01012.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
Length = 618
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 13/190 (6%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFL--GSHAYIKVTSVVGHVFRLD 64
L+VAEK S+A +IA L+ G + R+ ++ + + ++ + + GH+ +D
Sbjct: 6 LVVAEKDSVARAIAKYLAQGSISIRR----IYGIKAYWFTRDNRQWVSI-GLKGHIMNVD 60
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENIC 124
F W++ P LF ++ R L + L LD D EGE I
Sbjct: 61 FSEELNKWHSVEPSKLFDVEPILVIRGDDLNYVRALTHLGASANTVYLALDADPEGEAIA 120
Query: 125 FEVIECTGFQVNDARRKV--HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
+E + F + + R FS+VT I++A + N A V R +DL
Sbjct: 121 YEAM----FVIRNVNPGAVFKRVLFSAVTRNAIIEAFNSPTNLNPGLAKRVFTRMVLDLT 176
Query: 183 VGVAFTRFQT 192
+G FTR T
Sbjct: 177 LGAVFTRALT 186
>gi|357054019|ref|ZP_09115111.1| hypothetical protein HMPREF9467_02083 [Clostridium clostridioforme
2_1_49FAA]
gi|355385645|gb|EHG32697.1| hypothetical protein HMPREF9467_02083 [Clostridium clostridioforme
2_1_49FAA]
Length = 736
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 31/205 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA +L GK +G G Y+ VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARILKCGK-----------NINGAIEGER-YV-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARG-CGHLVLWLD 115
D+ Y++W + P+ ++F+ V K S + NQ RG G +++ D
Sbjct: 48 ADPEDYDKKYKEWKMEDLPIMPEVFKIEVIKQTSKQYQAV---KNQIYRGDVGDIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ TG + + R SSVT+K I + NL + L A
Sbjct: 105 AGREGELVARLILKKTG-----CNKPIRRLWISSVTDKAIREGFANLKDGREYNNLYDAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 160 MCRAEADWLVGINATRALTCKYNAQ 184
>gi|223476951|ref|YP_002581633.1| DNA topoisomerase I [Thermococcus sp. AM4]
gi|214032177|gb|EEB73007.1| DNA topoisomerase I [Thermococcus sp. AM4]
Length = 719
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 16/199 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKP++A IA L+ GK RK +V ++ F + V VGH+F L
Sbjct: 4 LIIAEKPNVARKIAYALAEGKP-VRKTIGKVSYYE--FTRDGKKVIVAPAVGHLFSL--A 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAESN---PKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
P + + D+ PV+ AE K +I + L A+ ++ D D EGE I
Sbjct: 59 PKTKTYGYP-VFDIEWVPVYVAEKGKGYAKDYI-KALATLAKKADEFIVACDYDTEGEVI 116
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEIDL 181
+ ++ + K R +FS++T+KD+LKA NL EP N +A AR +D
Sbjct: 117 GYTALK---YACGVDPSKAKRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHVLDW 172
Query: 182 KVGVAFTRFQTTYFQGKYG 200
GV +R T+ + G
Sbjct: 173 YWGVNLSRALTSAIKRASG 191
>gi|302336222|ref|YP_003801429.1| DNA topoisomerase I [Olsenella uli DSM 7084]
gi|301320062|gb|ADK68549.1| DNA topoisomerase I [Olsenella uli DSM 7084]
Length = 839
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 72 WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECT 131
W + L AP+ K + + I R L A+ +V+ D DREGE I + +
Sbjct: 111 WKVPSLPYLVWAPIEKLPA--ERGIIRALKNLAKKADSIVIGTDFDREGELIGSDALRQM 168
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
D V RAR+S+ T+ +I A NLV+ +++ A A ++RQ IDL G TR+
Sbjct: 169 RQVAPDV--PVSRARYSAFTKAEIDHAFANLVDLDQDLADAGESRQYIDLIWGAVLTRYL 226
Query: 192 TTYFQGKYGNLDS 204
T G +GN+ S
Sbjct: 227 TMARFGGFGNVRS 239
>gi|355575535|ref|ZP_09045005.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817547|gb|EHF02052.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
Length = 845
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 70 QDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIE 129
+ W ++ L P+ K + + I R L A+ +V+ D DREGE I + +
Sbjct: 109 KGWKVASLPYLVWTPIQKEPA--EKGIIRALKNLAKKADSIVIGTDFDREGELIGSDALR 166
Query: 130 CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTR 189
D V RAR+S+ T+ +I A NLVE +++ A A ++RQ IDL G TR
Sbjct: 167 QMREVAPDT--PVSRARYSAFTKAEIDHAFQNLVELDQDLADAGESRQYIDLIWGAVLTR 224
Query: 190 FQTTYFQGKYGNLDS 204
+ T G +GN+ S
Sbjct: 225 YLTMARFGGFGNVRS 239
>gi|337283960|ref|YP_004623434.1| DNA topoisomerase I [Pyrococcus yayanosii CH1]
gi|334899894|gb|AEH24162.1| DNA topoisomerase I [Pyrococcus yayanosii CH1]
Length = 1156
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 14/191 (7%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKP++A IA+ L+ G+ +K+ V ++ G + V VGH++ L
Sbjct: 2 ILIIAEKPNVARKIASALAEGRP-VKKSIYGVPYYELTRDGKR--LIVAPAVGHLYGL-- 56
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKV--HICRHLNQEARGCGHLVLWLDCDREGENI 123
+D+ D+ PV+ AE + + L+ A+ V+ D D EGE I
Sbjct: 57 -APKRDFFGYPIFDIEWVPVYVAEKGKEYAKDYIKALSVLAKRAKEFVVATDYDTEGEVI 115
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEIDL 181
+ ++ + RK R +FS++T++D+LKA NL EP N +A AR +D
Sbjct: 116 GYTALK---YACGVDPRKAKRMKFSALTKRDLLKAWYNL-EPTINFGMAGAGIARHVLDW 171
Query: 182 KVGVAFTRFQT 192
GV +R T
Sbjct: 172 YWGVNLSRALT 182
>gi|134045820|ref|YP_001097306.1| DNA topoisomerase I [Methanococcus maripaludis C5]
gi|132663445|gb|ABO35091.1| DNA topoisomerase I [Methanococcus maripaludis C5]
Length = 812
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 34/195 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G I V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYELERQGE--TIVVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH---LNQEARGCGHLVLWL 114
D+P W ++ LD K +I ++ L + ++G +
Sbjct: 59 TKTKFGDYPVYDIQWVPASTLD------------EKKYIQKYIDALKKVSKGANKFYVAT 106
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D D EGE I + + T Q N HR RFSS+T+K+I KA N E + A D
Sbjct: 107 DWDIEGELIGYHALNFTCGQKN-----AHRLRFSSLTKKEIAKAYENPNEIDFGLVDAGD 161
Query: 175 ARQEIDLKVGVAFTR 189
+R +ID G+ +R
Sbjct: 162 SRHKIDWYFGINVSR 176
>gi|385858204|ref|YP_005904715.1| DNA topoisomerase I [Mycoplasma hyorhinis MCLD]
gi|423262871|ref|YP_007012896.1| DNA topoisomerase I [Mycoplasma hyorhinis SK76]
gi|330723293|gb|AEC45663.1| DNA topoisomerase I [Mycoplasma hyorhinis MCLD]
gi|422035408|gb|AFX74250.1| DNA topoisomerase I [Mycoplasma hyorhinis SK76]
Length = 617
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 52 KVTSVVGHVFRLDFPPAY------QDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR 105
KV + VGHV L +Y Q+W PV++ ESN K I + L ++ +
Sbjct: 30 KVVASVGHVVNLKTSGSYGLGIDMQNW----------EPVYEVESNKK-EIVKSLKEDVK 78
Query: 106 GCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEP 165
+++ D DREGE I ++E + K R +++ +TE IL+++ N ++
Sbjct: 79 NSDMVIIATDADREGEAIGHTLVEILKIE-----NKYQRIKYNEITEAAILQSLKNPLKI 133
Query: 166 NRNEALAVDARQEIDLKVGVAF-----TRFQTTYFQGKYGNLDSRFISLVF 211
+ N A +R+ ID +G T+ + T G + S + LV
Sbjct: 134 DANLVNAQKSRRMIDRIIGFRLSSLLATKIKNTPITPSAGRVQSVALKLVI 184
>gi|378835765|ref|YP_005205041.1| DNA topoisomerase I [Mycoplasma hyorhinis GDL-1]
gi|367460550|gb|AEX14073.1| DNA topoisomerase I [Mycoplasma hyorhinis GDL-1]
Length = 612
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 52 KVTSVVGHVFRLDFPPAY------QDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR 105
KV + VGHV L +Y Q+W PV++ ESN K I + L ++ +
Sbjct: 25 KVVASVGHVVNLKTSGSYGLGIDMQNW----------EPVYEVESNKK-EIVKSLKEDVK 73
Query: 106 GCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEP 165
+++ D DREGE I ++E + K R +++ +TE IL+++ N ++
Sbjct: 74 NSDMVIIATDADREGEAIGHTLVEILKIE-----NKYQRIKYNEITEAAILQSLKNPLKI 128
Query: 166 NRNEALAVDARQEIDLKVGVAF-----TRFQTTYFQGKYGNLDSRFISLVF 211
+ N A +R+ ID +G T+ + T G + S + LV
Sbjct: 129 DANLVNAQKSRRMIDRIIGFRLSSLLATKIKNTPITPSAGRVQSVALKLVI 179
>gi|402579055|gb|EJW73008.1| hypothetical protein WUBG_16085 [Wuchereria bancrofti]
Length = 280
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 159 MGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTY 194
M NL PN NE+L+VDARQE+DL++G AFTRFQT Y
Sbjct: 1 MRNLGRPNINESLSVDARQELDLRIGCAFTRFQTRY 36
>gi|315646633|ref|ZP_07899750.1| DNA topoisomerase III [Paenibacillus vortex V453]
gi|315277959|gb|EFU41280.1| DNA topoisomerase III [Paenibacillus vortex V453]
Length = 761
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKP + +IA V+ R +L YI +T +GH+ L
Sbjct: 1 MKTLVIAEKPDMGRNIAAVIEPRAKNNR-----------TYLEGEQYI-ITWAIGHLVGL 48
Query: 64 DFP----PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCD 117
P P Y+ WN DL P K NPK + + + A+ C H+V D
Sbjct: 49 AEPDAYDPKYKRWNLR---DLPIIPEQFKIIPNPKTKDQLKVIGEVAKRCSHIVNACDAG 105
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDA 175
REG+ I F +I+ Q R+ V R S +T + I K L + E L A A
Sbjct: 106 REGQYI-FALIQ----QQLKLRQPVKRLWISDLTAESIAKGFAELKDGVEFEYLTQAARA 160
Query: 176 RQEIDLKVGVAFTRFQTTYFQG--KYGNLDSRFISLVF 211
R E D +G+ +R TT Q G + + ++L++
Sbjct: 161 RSEADWLIGMNASRAFTTRHQTLLSVGRVQTPVLALIY 198
>gi|388547724|ref|ZP_10150985.1| DNA topoisomerase III [Pseudomonas sp. M47T1]
gi|388274163|gb|EIK93764.1| DNA topoisomerase III [Pseudomonas sp. M47T1]
Length = 660
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 79/192 (41%), Gaps = 25/192 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL G+ +G LG A + VT VGH+ P
Sbjct: 3 LFICEKPSQARDIARVLQAGR-----------RAEGCLLG--AGVTVTWCVGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARG----CGHLVLWLDCDREGEN 122
Y L+ + + PK + L + RG CG +V+ D DREGE
Sbjct: 50 ETYGSHLKRWALEDLPILPQQWKVLPKPKVASQL-KVIRGLLGRCGEVVIATDADREGEM 108
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQEID 180
I E++E G+ R V R S++ + I +A+ L L + AR D
Sbjct: 109 IAREILELEGY-----RGPVQRLWLSALNDASIRQALAALKPGAETLPLYHSALARSRAD 163
Query: 181 LKVGVAFTRFQT 192
VG+ +R T
Sbjct: 164 WLVGINLSRLFT 175
>gi|330818847|ref|YP_004351064.1| TraE [Burkholderia gladioli BSR3]
gi|327374389|gb|AEA65741.1| TraE [Burkholderia gladioli BSR3]
Length = 751
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 38/231 (16%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHV 60
M ++L++AEKP++AL +A ++G + + DG F S + +TS GH+
Sbjct: 1 MVSQRILVIAEKPALALDVANAIAG----------QYKKLDGYF--SSNEMDITSGFGHL 48
Query: 61 FRL----DFPPAYQDWNASN-----PLDLFQAPVHKAESNPKVHICRHL---NQEARGCG 108
L + P Y+ WN + P PV K P + L Q +
Sbjct: 49 IGLVDAKVYDPRYEKWNLGDLPVLPPAYQKAVPVEKKTKKPNPGAVKRLALIGQLLKQAK 108
Query: 109 HLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR- 167
++ D DREG+ I E++E + R V R ++ T I A + +
Sbjct: 109 LVIHVGDPDREGQLIVDEILEHHKY-----RGPVQRMWLNAQTPSGIKHAYKTMKDNGEY 163
Query: 168 -NEALAVDARQEIDLKVGVAFTRFQTTYFQGK-------YGNLDSRFISLV 210
N A AR+E+D +G+ TR + ++ K G + S I LV
Sbjct: 164 ANLTRAAKAREELDWLIGINGTRGYSALWRKKGHEGMLIVGRVKSAVIGLV 214
>gi|126459728|ref|YP_001056006.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
gi|126249449|gb|ABO08540.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
Length = 596
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L+VAEK S+A +IA L G R V+ F ++GH+ DF
Sbjct: 3 LIVAEKRSVAKAIAQFLGGSYRAQR-----VYGVPAYFFNYGGEAVSLGLMGHIMDFDFA 57
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
W P LF A + + L AR + L LD D EGE I +E
Sbjct: 58 ARENVWTWIPPEQLFHATPLLVIRDEAAQYVKALQSLARRADEVYLALDADVEGEAIAYE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+ + R +++R +F++VT KDI A N V R +IDL +G
Sbjct: 118 AAIAV--RAVNRRARLYRVKFNAVTPKDIRAAFQKPDTLNLKLVEKVFTRMQIDLTLGAV 175
Query: 187 FTRFQT 192
FTR T
Sbjct: 176 FTRALT 181
>gi|374292307|ref|YP_005039342.1| DNA topoisomerase III [Azospirillum lipoferum 4B]
gi|357424246|emb|CBS87113.1| DNA topoisomerase III [Azospirillum lipoferum 4B]
Length = 752
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 50 YIKVTSVVGHVFRLDFP----PAYQDWNAS--NPLDLFQAPVHKAESNPKVHICRHLNQE 103
Y ++ GH+ RL P PA++ W+ + P L+ P + K + +
Sbjct: 24 YGRILPAEGHLLRLAEPDEVDPAWKRWSPTLLKPDGLY--PTRPDQGGNKAAKLQAITAA 81
Query: 104 ARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLV 163
R C ++L DCDREG+ I E++E G+ R KV RA F++ K + A L
Sbjct: 82 LRACDEVILATDCDREGQLIGQEILEHVGY-----RGKVRRALFTAQDPKTLRDAFSAL- 135
Query: 164 EPN---RNEALAVDARQEIDLKVGVAFTRFQT 192
+PN R A ARQ+ D ++ TR T
Sbjct: 136 KPNDSMRPLYEAAVARQQADQIYNLSLTRTAT 167
>gi|354582839|ref|ZP_09001740.1| DNA topoisomerase III [Paenibacillus lactis 154]
gi|353199131|gb|EHB64597.1| DNA topoisomerase III [Paenibacillus lactis 154]
Length = 760
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKP + +IA V+ R +L YI +T +GH+ L
Sbjct: 1 MKTLVIAEKPDMGRNIAAVIEPRAKNHR-----------TYLEGEQYI-ITWAIGHLVGL 48
Query: 64 DFP----PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCD 117
P P Y+ WN DL P K NPK + + + A+ C H+V D
Sbjct: 49 AEPDAYDPKYKRWNLR---DLPIIPEQFKIVPNPKTKDQLKVIGEVAKRCSHIVNACDAG 105
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDA 175
REG+ I F +I+ Q R+ V R S +T + I K L + E L A A
Sbjct: 106 REGQYI-FALIQ----QQLKLRQPVKRLWISDLTPESIAKGFAELKDGAEFEDLTQAARA 160
Query: 176 RQEIDLKVGVAFTRFQTTYFQG--KYGNLDSRFISLVF 211
R E D +G+ +R TT Q G + + ++L++
Sbjct: 161 RSEADWLIGMNASRAFTTRHQTLLSVGRVQTPVLALIY 198
>gi|375082250|ref|ZP_09729318.1| DNA topoisomerase I [Thermococcus litoralis DSM 5473]
gi|374743138|gb|EHR79508.1| DNA topoisomerase I [Thermococcus litoralis DSM 5473]
Length = 840
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 20/193 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++AEKP++A IA L+ K RK +V ++ G I V VGH+F L
Sbjct: 1 MTTLIIAEKPNVARKIAYALAEKKP-IRKTIGKVPYYELTRDGKK--IIVAPAVGHLFSL 57
Query: 64 DFPPAYQDWNASNPL-DLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
A ++ P+ D+ PV+ AE S K +I + L + A+ V+ D D E
Sbjct: 58 ----APKEKTYGYPVFDIEWVPVYVAEKGKSYAKDYI-KALRELAKRADEFVVACDYDTE 112
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--AR 176
GE I + ++ G + A+R +FS++T+KD+L+A NL EP N +A AR
Sbjct: 113 GEVIGYTALKYACGVDPSKAKR----MKFSALTKKDLLRAWYNL-EPTINFGMADAGIAR 167
Query: 177 QEIDLKVGVAFTR 189
+D GV +R
Sbjct: 168 HILDWYWGVNLSR 180
>gi|33152093|ref|NP_873446.1| DNA topoisomerase III [Haemophilus ducreyi 35000HP]
gi|33148315|gb|AAP95835.1| DNA topoisomerase III [Haemophilus ducreyi 35000HP]
Length = 503
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL K DG + + VT +GH+ P
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGDGCLSSGNGQVFVTWGIGHLVEQLNP 51
Query: 67 ----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P ++ W+ P AP K E+ + +I L ++A +++ D DR
Sbjct: 52 EQYHPEWKKWSLETLPIIPGQWQLAP--KKETKKQYNIVIKLIKQA---SEVIIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL----AVD 174
EGE I E++E GF + K+ R S++ + I KA+ L++PN +E L A
Sbjct: 107 EGETIARELLELAGF-----KGKIQRLWLSALDDASIRKALA-LLKPN-HETLPLYYAGL 159
Query: 175 ARQEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
R D +G+ F+R Q +QGK G + S ++LV +
Sbjct: 160 GRSRADWLIGMNFSRLFTLLAQQQGYQGKPLSVGRVQSPTLALVVN 205
>gi|160940953|ref|ZP_02088293.1| hypothetical protein CLOBOL_05845 [Clostridium bolteae ATCC
BAA-613]
gi|158436197|gb|EDP13964.1| hypothetical protein CLOBOL_05845 [Clostridium bolteae ATCC
BAA-613]
Length = 733
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G Y+ VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARVLKCGK-----------NINGAIEGDR-YV-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARG-CGHLVLWLD 115
D+ Y++W + P+ ++F+ V K S + Q RG G +++ D
Sbjct: 48 ADPEDYDKKYKEWKMEDLPMMPEVFKLEVIKQTSKQYQAV---KTQIYRGDVGDIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ TG + + R SSVT+K I + NL + L A
Sbjct: 105 AGREGELVARLILKKTG-----CNKPIRRLWISSVTDKAIREGFANLKDGREYNNLYDAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 160 MCRAEADWLVGINATRALTCKYNAQ 184
>gi|421504366|ref|ZP_15951308.1| DNA topoisomerase III [Pseudomonas mendocina DLHK]
gi|400344921|gb|EJO93289.1| DNA topoisomerase III [Pseudomonas mendocina DLHK]
Length = 819
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G+ G S A I VT +GH+ P
Sbjct: 3 LFLCEKPSQGKDIARVLGAGQ-------------RGSGCYSGAGIVVTWCIGHLIEAAPP 49
Query: 67 PAYQDWNASNPLDLFQAPV--------HKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + L+ Q P+ KA + ++ I + L +A LV+ D DR
Sbjct: 50 EAYGEQYKRWSLE--QLPIIPERWRVEPKAATAAQLKIVKQLVSQA---SELVIATDADR 104
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I E+IE G+ R + R S++ + I KA+G L + L A AR
Sbjct: 105 EGEMIAREIIELCGY-----RGPIQRLWLSALNDASIRKALGALSPSSETLPLYAAALAR 159
Query: 177 QEIDLKVGVAFTRFQT 192
D VG+ +R T
Sbjct: 160 SRADWLVGMNLSRLFT 175
>gi|163790183|ref|ZP_02184616.1| DNA topoisomerase III [Carnobacterium sp. AT7]
gi|159874458|gb|EDP68529.1| DNA topoisomerase III [Carnobacterium sp. AT7]
Length = 701
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA VL T+K+ T + D + VT +GH+ L
Sbjct: 11 MKTLIIAEKPSVGKEIARVLGA----TQKSKTHIEGKD---------VIVTWALGHLLGL 57
Query: 64 DFPPAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y+ W+ + P + P+ S K + L + + G V+ D
Sbjct: 58 KMPEEYKKEWATWDLNTLPLIPEKMLTTPLKNTRSQLKA--IKQL-ADRKDIGSAVIATD 114
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD- 174
REGE + ++E F + + R SS T+K I + N ++P++ D
Sbjct: 115 AGREGELVARWILEYVHFN-----KPIKRLWISSQTDKAIKEGF-NQLQPSKKYDTLYDS 168
Query: 175 --ARQEIDLKVGVAFTRFQTTYFQ 196
AR E D +G+ TR T +Q
Sbjct: 169 AVARSEADWLIGLNVTRALTVKYQ 192
>gi|302384701|ref|YP_003820523.1| DNA topoisomerase III [Clostridium saccharolyticum WM1]
gi|302195329|gb|ADL02900.1| DNA topoisomerase III [Clostridium saccharolyticum WM1]
Length = 734
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL T+ H DG+ G AY+ VT +GH+ L
Sbjct: 1 MKSLIIAEKPSVARDIARVLH---------CTKNH--DGVIEG-EAYV-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ P Y++W + P+ D F+ V K + +++ G +++ D
Sbjct: 48 ADPEDYDPKYKEWKMEDLPMMPDQFRLEVIKQTGKQYRVVKAQIHRS--DVGEIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + ++E G ++ + R SSVT+K I + + + + L A
Sbjct: 106 GREGELVARLILEKAG-----NKKPIKRLWISSVTDKAIKEGFAKIKNGHEYDNLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYF 195
R E D VG+ TR T +
Sbjct: 161 CRAEADWLVGINATRALTCKY 181
>gi|229816419|ref|ZP_04446720.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
gi|229807961|gb|EEP43762.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
Length = 860
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 51/243 (20%)
Query: 7 LMVAEKPSIALSIATVLS--GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
L+VAEK A IA +L+ G + +T+V+ F +G ++ + + GH+ D
Sbjct: 3 LVVAEKNIAAQKIAQLLADAGAPKNDKVYNTQVYRFK---VGGEDWVSM-GLAGHILAPD 58
Query: 65 FP---------------------PA-YQDWNASNPLDLFQAPV---------HKAESNP- 92
FP PA D A P D + P K ES P
Sbjct: 59 FPDEILFDKKMGWYSLTEDGEVLPAGVPDGLARPPYDTKRKPFLANGINIKGWKVESLPY 118
Query: 93 -----------KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRK 141
+ I R L A+ +++ D DREGE I + + +
Sbjct: 119 LTWSPIIKNPAEKEIIRVLKNLAKKADEVIIATDFDREGELIGSDALNM--IREVAPELP 176
Query: 142 VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
RAR+S++ + ++ +A NLVE +++ A A ++RQ IDL G TR+ T G +GN
Sbjct: 177 ARRARYSALIKGEVTEAFANLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGN 236
Query: 202 LDS 204
+ S
Sbjct: 237 VRS 239
>gi|168178782|ref|ZP_02613446.1| DNA topoisomerase III [Clostridium botulinum NCTC 2916]
gi|182670642|gb|EDT82616.1| DNA topoisomerase III [Clostridium botulinum NCTC 2916]
Length = 731
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D K ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKKMKTTVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|408357463|ref|YP_006845994.1| DNA topoisomerase III [Amphibacillus xylanus NBRC 15112]
gi|407728234|dbj|BAM48232.1| DNA topoisomerase III [Amphibacillus xylanus NBRC 15112]
Length = 718
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 31/204 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K++++AEKPS+ +A VL ++ +G F G+ YI VT +GH+ L
Sbjct: 3 KIVVLAEKPSVGRDMARVLKCQ-----------NKQNGYFEGAK-YI-VTWALGHLVTLA 49
Query: 65 FP----PAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P P Y+ W + + P+ D + V + ++N + + + L + +++ D
Sbjct: 50 DPEAYDPKYKQWRSEDLPMLPDRLKTVVIR-QTNRQFQVVKKLLNR-KDVSQVIIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNE---ALAVD 174
REGE + +IE T ++N + + R SSVT+K I NL +P LA
Sbjct: 108 REGELVARWIIEKT--RIN---KPIKRLWISSVTDKAIQAGFRNL-QPGEKYYPLYLAAA 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR E D VG+ TR TT Q +
Sbjct: 162 ARSEADWYVGLNATRALTTTHQAQ 185
>gi|187780094|ref|ZP_02996567.1| hypothetical protein CLOSPO_03690 [Clostridium sporogenes ATCC
15579]
gi|187773719|gb|EDU37521.1| DNA topoisomerase [Clostridium sporogenes ATCC 15579]
Length = 731
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D K ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKKMKTTVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|306520348|ref|ZP_07406695.1| putative DNA topoisomerase [Clostridium difficile QCD-32g58]
Length = 571
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-RVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V KA + + +I + L + + ++ D R
Sbjct: 50 DAYDEKYAKWNMADLPIIPSD-YKYEVAKA-TKKQFNILKKLMND-KEVDTVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|45358519|ref|NP_988076.1| DNA topoisomerase I [Methanococcus maripaludis S2]
gi|44921277|emb|CAF30512.1| DNA topoisomerase I [Methanococcus maripaludis S2]
Length = 823
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G I V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYELERNGES--IVVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH---LNQEARGCGHLVLWL 114
D+P +W ++ LD K +I ++ L + ++ +
Sbjct: 59 TKTKFGDYPVYDINWVPASTLD------------EKKYIQKYIDALKKVSKDANKFYVAT 106
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D D EGE I + + + Q N HR RFSS+T+K+ILKA N E + A D
Sbjct: 107 DWDIEGELIGYHALNFSCGQKN-----AHRLRFSSLTKKEILKAYENPNEIDFGLVDAGD 161
Query: 175 ARQEIDLKVGVAFTR 189
+R +ID G+ +R
Sbjct: 162 SRHKIDWYFGINVSR 176
>gi|340624276|ref|YP_004742729.1| DNA topoisomerase I [Methanococcus maripaludis X1]
gi|339904544|gb|AEK19986.1| DNA topoisomerase I [Methanococcus maripaludis X1]
Length = 823
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G I V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYELERNGES--IVVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRH---LNQEARGCGHLVLWL 114
D+P +W ++ LD K +I ++ L + ++ +
Sbjct: 59 TKTKFGDYPVYDINWVPASTLD------------EKKYIQKYIDALKKVSKDANKFYVAT 106
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D D EGE I + + + Q N HR RFSS+T+K+ILKA N E + A D
Sbjct: 107 DWDIEGELIGYHALNFSCGQKN-----AHRLRFSSLTKKEILKAYENPNEIDFGLVDAGD 161
Query: 175 ARQEIDLKVGVAFTR 189
+R +ID G+ +R
Sbjct: 162 SRHKIDWYFGINVSR 176
>gi|254976976|ref|ZP_05273448.1| putative DNA topoisomerase [Clostridium difficile QCD-66c26]
gi|255651894|ref|ZP_05398796.1| putative DNA topoisomerase [Clostridium difficile QCD-37x79]
gi|260687149|ref|YP_003218283.1| DNA topoisomerase [Clostridium difficile R20291]
gi|260213166|emb|CBE04617.1| putative DNA topoisomerase [Clostridium difficile R20291]
Length = 568
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-RVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V KA + + +I + L + + ++ D R
Sbjct: 50 DAYDEKYAKWNMADLPIIPSD-YKYEVAKA-TKKQFNILKKLMND-KEVDTVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|95929067|ref|ZP_01311812.1| DNA topoisomerase [Desulfuromonas acetoxidans DSM 684]
gi|95134968|gb|EAT16622.1| DNA topoisomerase [Desulfuromonas acetoxidans DSM 684]
Length = 810
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 92 PKVHIC----RH---LNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHR 144
PK HI +H L +E C L+L D DREGE I + ++E G N + KV R
Sbjct: 52 PKYHILPESQKHIELLTKEVAKCEELLLATDLDREGEAIAWHLLEALGIDENSDKPKVKR 111
Query: 145 ARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDS 204
F +T+ ILKA+ +R+ A AR +D VG + F + + +YG
Sbjct: 112 VTFHEITKPAILKAVAEPHHISRDLVNAQQARVILDYLVGFTLSPF--LWKKIRYGLSAG 169
Query: 205 RFISLVFSSLFLIC 218
R S+ +L L+C
Sbjct: 170 RVQSV---ALRLVC 180
>gi|218884347|ref|YP_002428729.1| DNA topoisomerase I [Desulfurococcus kamchatkensis 1221n]
gi|218765963|gb|ACL11362.1| DNA topoisomerase I family A [Desulfurococcus kamchatkensis 1221n]
Length = 679
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL- 63
++L++AEKP A IA+ LS R S ++E D S VGH+++L
Sbjct: 14 RILVIAEKPKAAKKIASALSPTHNAKRIGSITIYEVDSYSSSIII----ASSVGHLYQLH 69
Query: 64 ----DFPPAYQDWNASNPLDLFQAPVHKAESNPKV--HICRHLNQEARGCGHLVLWLDCD 117
+P +W P+H + + K L + RG + V D D
Sbjct: 70 TSLRGYPVYSYEW----------IPLHLTDPSKKYIREYLEVLGKLCRGVDYYVNACDYD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EG I + +I+ G + RK RARFSS+T +++ KA NL + A R
Sbjct: 120 IEGSVIGYLIIKFNGDE-----RKAFRARFSSLTIEELRKAFNNLTRLDYEMIEAGLCRH 174
Query: 178 EIDLKVGVAFTR 189
E+D G+ +R
Sbjct: 175 ELDWIWGINVSR 186
>gi|160946658|ref|ZP_02093861.1| hypothetical protein PEPMIC_00616 [Parvimonas micra ATCC 33270]
gi|158447042|gb|EDP24037.1| DNA topoisomerase [Parvimonas micra ATCC 33270]
Length = 568
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-RVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V KA + + +I + L + + ++ D R
Sbjct: 50 DAYDEKYAKWNMADLPIIPSD-YKYEVAKA-TKKQFNILKKLMND-KEVDTVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|139439563|ref|ZP_01772995.1| Hypothetical protein COLAER_02022 [Collinsella aerofaciens ATCC
25986]
gi|133775116|gb|EBA38936.1| DNA topoisomerase [Collinsella aerofaciens ATCC 25986]
Length = 785
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 72 WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECT 131
W + L APV K + + + R L A+ +++ D DREGE I + +
Sbjct: 32 WKLESLPYLTWAPVIKLPA--EKELIRSLKNLAKKSDSVIIATDFDREGELIGSDALNKV 89
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
D V RA++SS T+ +I +A NLV ++N A A ++RQ IDL G TR+
Sbjct: 90 REVAPDL--PVARAQYSSFTKAEITQAFDNLVSLDQNLADAGESRQHIDLIWGAVLTRYL 147
Query: 192 TTYFQGKYGNLDS 204
T G +GN+ S
Sbjct: 148 TLAKFGGFGNVRS 160
>gi|114330417|ref|YP_746639.1| DNA topoisomerase III [Nitrosomonas eutropha C91]
gi|114307431|gb|ABI58674.1| DNA topoisomerase III [Nitrosomonas eutropha C91]
Length = 832
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 31/200 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA VL G +T++ G + S Y+ ++S +GH+ L
Sbjct: 3 KKLIIAEKPSVANDIARVLGG---FTKQ---------GDYFESDEYV-LSSAIGHLLELI 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P Y+ W+ + P AP+ K K+ + + + + + L+ D
Sbjct: 50 VPEEYEVKRGKWSFDHLPVIPPRFDLAPIEKTMDRLKL-LSKLIKR--KDVDVLINACDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA- 175
REGE I ++ TG +++ + R S+T I +A NL+E + + LA A
Sbjct: 107 GREGELIFRYIVRHTG-----SKKPIKRLWLQSMTPVAIREAFTNLLEDSEVQPLADAAV 161
Query: 176 -RQEIDLKVGVAFTRFQTTY 194
R E D VG+ TR T +
Sbjct: 162 SRSEADWLVGINGTRVMTAF 181
>gi|288958724|ref|YP_003449065.1| DNA topoisomerase III [Azospirillum sp. B510]
gi|288911032|dbj|BAI72521.1| DNA topoisomerase III [Azospirillum sp. B510]
Length = 760
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 52 KVTSVVGHVFRLDFP----PAYQDWNAS--NPLDLFQAPVHKAESNPKVHICRHLNQEAR 105
++ GH+ RL P PA++ W+ + P L+ P + K + + R
Sbjct: 26 RILPAEGHLLRLAEPDEVDPAWKRWSPTLLKPDGLY--PTRPDQGGNKAAKLQAITTALR 83
Query: 106 GCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEP 165
C ++L DCDREG+ I E++E G+ R KV RA F++ K + A L +P
Sbjct: 84 ACDEVILATDCDREGQLIGQEILEHVGY-----RGKVRRALFTAQDPKTLRDAFAAL-KP 137
Query: 166 N---RNEALAVDARQEIDLKVGVAFTRFQT 192
N R A ARQ+ D ++ TR T
Sbjct: 138 NDSMRPLYEAAVARQQADQIYNLSLTRTAT 167
>gi|355672940|ref|ZP_09058661.1| DNA topoisomerase 3 [Clostridium citroniae WAL-17108]
gi|354814967|gb|EHE99565.1| DNA topoisomerase 3 [Clostridium citroniae WAL-17108]
Length = 735
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G YI VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARVLKCGK-----------NQNGAIEGDR-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ Y++W + P+ D+F+ V ++ + H + + G +++ D
Sbjct: 48 ADPEDYDKKYKEWKMEDLPMLPDVFKLEVI-GQTAKQYHAVK-TQIHRKDVGLIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + +++ G + + + R SSVT+K I + NL + ++L A
Sbjct: 106 GREGELVARLILKKAG-----SNKPIKRLWISSVTDKAIREGFANLKDGKEYDSLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 161 CRAEADWMVGINATRALTCKYNAQ 184
>gi|126090274|ref|YP_001041729.1| DNA topoisomerase III [Shewanella baltica OS155]
gi|125999905|gb|ABN63974.1| DNA topoisomerase III [Shewanella baltica OS155]
Length = 707
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA+VL DG+F G I VT VGHV + P
Sbjct: 3 LFLCEKPSQAKDIASVLG------------CKRGDGVFTGDG--IAVTFCVGHVLQQAEP 48
Query: 67 PAYQ-DWNASNPLDLFQAP-VHKAESNPKVHICRHL-NQEARGCGHLVLWLDCDREGENI 123
Y D+ N +DL P V K +PK + ++ +++ D DREGE I
Sbjct: 49 ENYNPDFETWNIVDLPIIPTVWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVI 108
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA---RQEID 180
EV+E + + + R S++ + I KA+ +L PN A DA R D
Sbjct: 109 AREVLEYVNY-----KGPIQRLWLSALDDASIKKALASL-RPNHETAKLYDAGLGRSRGD 162
Query: 181 LKVGVAFTRFQTTYFQGKYG 200
+G+ TR T +YG
Sbjct: 163 WLIGMNMTRL-CTLLSREYG 181
>gi|323483685|ref|ZP_08089068.1| DNA topoisomerase [Clostridium symbiosum WAL-14163]
gi|355622736|ref|ZP_09046796.1| DNA topoisomerase 3 [Clostridium sp. 7_3_54FAA]
gi|323403021|gb|EGA95336.1| DNA topoisomerase [Clostridium symbiosum WAL-14163]
gi|354822784|gb|EHF07135.1| DNA topoisomerase 3 [Clostridium sp. 7_3_54FAA]
Length = 735
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G YI VT +GH+ L
Sbjct: 1 MKSLVLAEKPSVARDIARVLKCGK-----------SLNGAMEGQE-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ P Y++W + P+ D F+ V K + L + +++ D
Sbjct: 48 ADPEDYHPRYKEWKMEDLPMLPDEFKLEVIKQTGKQYNAVKTQLYRN--DVKDIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + +++ G +R+ + R SSVT+K I + +L + + L A
Sbjct: 106 GREGELVARLILKKAG-----SRKPIRRLWISSVTDKAIREGFAHLKDGREYDNLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 161 CRAEADWMVGINATRALTCKYNAQ 184
>gi|386343343|ref|YP_006039708.1| DNA topoisomerase III [Shewanella baltica OS117]
gi|334865871|gb|AEH16340.1| DNA topoisomerase III [Shewanella baltica OS117]
Length = 711
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA+VL DG+F G I VT VGHV + P
Sbjct: 3 LFLCEKPSQAKDIASVLG------------CKRGDGVFTGDG--IAVTFCVGHVLQQAEP 48
Query: 67 PAYQ-DWNASNPLDLFQAP-VHKAESNPKVHICRHL-NQEARGCGHLVLWLDCDREGENI 123
Y D+ N +DL P V K +PK + ++ +++ D DREGE I
Sbjct: 49 ENYNPDFETWNIVDLPIIPTVWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVI 108
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA---RQEID 180
EV+E + + + R S++ + I KA+ +L PN A DA R D
Sbjct: 109 AREVLEYVNY-----KGPIQRLWLSALDDASIKKALASL-RPNHETAKLYDAGLGRSRGD 162
Query: 181 LKVGVAFTRFQTTYFQGKYG 200
+G+ TR T +YG
Sbjct: 163 WLIGMNMTRL-CTLLSREYG 181
>gi|451811881|ref|YP_007448335.1| DNA topoisomerase III [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451777783|gb|AGF48731.1| DNA topoisomerase III [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 818
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 28/198 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A I+ L G K D F + Y+ + S +GH+ L
Sbjct: 3 KQLIIAEKPSVANDISKALGGFKK------------DNDFYENEEYV-IASSIGHLLTLS 49
Query: 65 FP--PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P P+ WN S+ P P+ K +S+ ++ I + + + ++ D R
Sbjct: 50 APNEPSKGKWNLSSLPIIPNKFELVPIDK-KSSERLKILNKIIKR-KDITSIINACDAGR 107
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I +IE + +++++R F S+T+ I A NL + ++L A +R
Sbjct: 108 EGELIFRYIIE-----FSKTKKQIYRLWFQSMTKDAIQTAFKNLKNDEQLKSLEYAARSR 162
Query: 177 QEIDLKVGVAFTRFQTTY 194
E D +G+ TR T +
Sbjct: 163 AEADWLIGINGTRAMTAF 180
>gi|153938192|ref|YP_001390639.1| DNA topoisomerase III [Clostridium botulinum F str. Langeland]
gi|384461699|ref|YP_005674294.1| DNA topoisomerase III [Clostridium botulinum F str. 230613]
gi|152934088|gb|ABS39586.1| DNA topoisomerase III [Clostridium botulinum F str. Langeland]
gi|295318716|gb|ADF99093.1| DNA topoisomerase III [Clostridium botulinum F str. 230613]
Length = 731
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ-----EARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|212223461|ref|YP_002306697.1| topA [Thermococcus onnurineus NA1]
gi|212008418|gb|ACJ15800.1| topA [Thermococcus onnurineus NA1]
Length = 717
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKP++A IA L+ G+ RK +V ++ F I V VGH+F L
Sbjct: 4 LIIAEKPNVARKIAYALAEGRP-VRKTIGKVPYYE--FTRDGKRIIVAPAVGHLFSL--A 58
Query: 67 PAYQDWNASNPLDLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVLWLDCDREGENI 123
P + + D+ PV+ AE S K +I + L A+ V+ D D EGE I
Sbjct: 59 PKTKTYGYP-VFDIEWVPVYVAEKGKSYAKDYI-KALATLAKRADEFVVACDYDTEGEVI 116
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEP-NRNEALAVDARQEIDLK 182
+ ++ + K R +FS++T+KD+LKA NL N A A AR +D
Sbjct: 117 GYTALK---YACGVDPSKAKRMKFSALTKKDLLKAWYNLESTINFGMADAGIARHVLDWY 173
Query: 183 VGVAFTRFQTTYFQGKYG 200
GV +R T+ + G
Sbjct: 174 WGVNLSRALTSAIKRASG 191
>gi|152974194|ref|YP_001373711.1| DNA topoisomerase III [Bacillus cytotoxicus NVH 391-98]
gi|152022946|gb|ABS20716.1| DNA topoisomerase III [Bacillus cytotoxicus NVH 391-98]
Length = 729
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL T+K + FL YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIAKVLK----CTKKGNG--------FLEGDKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARG-CGHLVLWLDCD 117
P AY + + N DL P V ++ + H +H Q +R +++ D
Sbjct: 50 DPEAYDNKYKTWNLEDLPMLPERMKLVVIKQTGKQFHAVKH--QLSRNDVNEIIVATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVD 174
REGE + +IE ++ + R SSVT+K I NL +P + N +
Sbjct: 108 REGELVARWIIEKA-----KVKKPIKRLWISSVTDKAIKDGFRNL-KPGKTYDNLYASAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
AR E D +G+ TR TT F + G + + ++++ S
Sbjct: 162 ARSEADWYIGLNATRALTTKFNAQLNCGRVQTPTVAIIAS 201
>gi|300521518|gb|ADK25970.1| topoisomerase IA [Candidatus Nitrososphaera gargensis]
Length = 685
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
L L+V EKP A IA L G ++ A V FD S + KV S +GH++ L
Sbjct: 1 LYTLVVCEKPDAARRIAQAL-GDPKESKPAGISV--FD--VANSDCHYKVCSALGHLYGL 55
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKV-HICRHLNQEARGCGHLVLWLDCDREGEN 122
+ ++ + LDL APV K NP+ + +++ ++ V D D+EGE
Sbjct: 56 --ADSTKNRSVYPVLDLEWAPVDK---NPRAARAIKVISELSKNASAFVHACDYDQEGEV 110
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +++ + K RA+FS++T+++I ++ +L P+ A A +R +D
Sbjct: 111 IGHNILQ---YACGGKYEKALRAKFSTLTDEEIRESFASLERPSGGLAEAGRSRHMLDFI 167
Query: 183 VGVAFTR 189
GV +R
Sbjct: 168 YGVNLSR 174
>gi|225019441|ref|ZP_03708633.1| hypothetical protein CLOSTMETH_03394 [Clostridium methylpentosum
DSM 5476]
gi|224947770|gb|EEG28979.1| hypothetical protein CLOSTMETH_03394 [Clostridium methylpentosum
DSM 5476]
Length = 720
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+L++AEKPS+ IA VL G K R A G L YI VT +GH+ L
Sbjct: 3 KILVLAEKPSVGREIARVL-GCK---RNA--------GGALSGEKYI-VTWALGHLVELA 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHK------AESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P Y D + ++ HK E++ + + + L + LV+ D R
Sbjct: 50 EPEHYGDQYKTWSMETLPMMPHKMALKVIPETSKQYSVVKRLLRSPE-VSSLVIATDAGR 108
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--R 176
EGE + +IE GF + + R SS T+K I + +L + E L + A R
Sbjct: 109 EGELVARWIIEMAGFH-----KPIKRLWISSQTDKAIKEGFAHLRDGREYENLYMSAQSR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 AEADWLVGLNVTRALTCKYNAQ 185
>gi|423456012|ref|ZP_17432865.1| DNA topoisomerase 3 [Bacillus cereus BAG5X1-1]
gi|401133268|gb|EJQ40900.1| DNA topoisomerase 3 [Bacillus cereus BAG5X1-1]
Length = 729
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA VL K + +G FL YI VT +GH+ L
Sbjct: 3 KSLVLAEKPSVARDIANVLKCNK-----------KGNG-FLEGDKYI-VTWALGHLVTLA 49
Query: 65 FP----PAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P YQ WN + P+ D + V K + LN+ +++ D
Sbjct: 50 DPEMYDKKYQKWNLEDLPMLPDRLKLSVIKQSGKQFNSVKSQLNR--NDVNEIIIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVD 174
REGE + +I + +VN + + R SSVT+K I NL +P + N A
Sbjct: 108 REGELVARWIIAKS--KVN---KPIKRLWISSVTDKAIKDGFNNL-KPGKAYENLYFAAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR E D +G+ TR TT + +
Sbjct: 162 ARSEADWYIGLNATRALTTKYNAQ 185
>gi|304373083|ref|YP_003856292.1| DNA topoisomerase I [Mycoplasma hyorhinis HUB-1]
gi|304309274|gb|ADM21754.1| DNA topoisomerase I [Mycoplasma hyorhinis HUB-1]
Length = 617
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 52 KVTSVVGHVFRLDFPPAY------QDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR 105
KV + VGHV L +Y Q+W PV++ ES+ K I + L ++ +
Sbjct: 30 KVVASVGHVVNLKTSGSYGLGIDMQNW----------EPVYEVESDKK-EIVKSLKEDVK 78
Query: 106 GCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEP 165
+++ D DREGE I ++E + K R +++ +TE IL+++ N ++
Sbjct: 79 NSDMVIIATDADREGEAIGHTLVEILKIE-----NKYQRIKYNEITEAAILQSLKNPLKI 133
Query: 166 NRNEALAVDARQEIDLKVGVAF-----TRFQTTYFQGKYGNLDSRFISLVF 211
+ N A +R+ ID +G T+ + T G + S + LV
Sbjct: 134 DANLVNAQKSRRMIDRIIGFRLSSLLATKIKNTPITPSAGRVQSVALKLVI 184
>gi|323692649|ref|ZP_08106881.1| DNA topoisomerase [Clostridium symbiosum WAL-14673]
gi|323503346|gb|EGB19176.1| DNA topoisomerase [Clostridium symbiosum WAL-14673]
Length = 735
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G YI VT +GH+ L
Sbjct: 1 MKSLVLAEKPSVARDIARVLKCGK-----------SLNGAMEGQE-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ P Y++W + P+ D F+ V K + L + +++ D
Sbjct: 48 ADPEDYHPRYKEWKMEDLPMLPDEFKLEVIKQTGKQYNAVRTQLYRN--DVKDIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + +++ G +R+ + R SSVT+K I + +L + + L A
Sbjct: 106 GREGELVARLILKKAG-----SRKPIRRLWISSVTDKAIREGFAHLKDGREYDNLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 161 CRAEADWMVGINATRALTCKYNAQ 184
>gi|418627222|ref|ZP_13189802.1| DNA topoisomerase III [Staphylococcus epidermidis VCU126]
gi|374830085|gb|EHR93874.1| DNA topoisomerase III [Staphylococcus epidermidis VCU126]
Length = 650
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K +N + I + L + + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISK--TNRQFKIVKSLILD-KNVKEIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDRVG-----NKKPIKRLWISSVTKKAIQEGFKRLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|387817567|ref|YP_005677912.1| DNA topoisomerase III [Clostridium botulinum H04402 065]
gi|322805609|emb|CBZ03174.1| DNA topoisomerase III [Clostridium botulinum H04402 065]
Length = 731
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ-----EARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|159906081|ref|YP_001549743.1| DNA topoisomerase I [Methanococcus maripaludis C6]
gi|159887574|gb|ABX02511.1| DNA topoisomerase I [Methanococcus maripaludis C6]
Length = 814
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G + + V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYEVERSGEN--VIVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
D+P DW ++ LD K + + +++EA + D D
Sbjct: 59 NKAKFGDYPVYDIDWVPASTLD------EKKYIQKYIDALKKVSKEAN---KFYVATDWD 109
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I + + + Q N HR RFSS+T+K+I+KA E + A D+R
Sbjct: 110 IEGELIGYHALNFSCGQKN-----AHRLRFSSLTKKEIVKAYETPNEIDFGLVDAGDSRH 164
Query: 178 EIDLKVGVAFTR 189
+ID G+ +R
Sbjct: 165 KIDWYFGINVSR 176
>gi|150402130|ref|YP_001329424.1| DNA topoisomerase I [Methanococcus maripaludis C7]
gi|150033160|gb|ABR65273.1| DNA topoisomerase I [Methanococcus maripaludis C7]
Length = 814
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G + + V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYEVERSGEN--VIVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
D+P DW ++ LD K + + +++EA + D D
Sbjct: 59 TKTKFGDYPVYDIDWVPASTLD------EKKYIQKYIDALKKVSKEAN---KFYVATDWD 109
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
EGE I + + + Q N HR RFSS+T+K+I+KA E + A D+R
Sbjct: 110 IEGELIGYHALNFSCGQKN-----AHRLRFSSLTKKEIVKAYETPNEIDFGLVDAGDSRH 164
Query: 178 EIDLKVGVAFTR 189
+ID G+ +R
Sbjct: 165 KIDWYFGINVSR 176
>gi|226948556|ref|YP_002803647.1| DNA topoisomerase III [Clostridium botulinum A2 str. Kyoto]
gi|226842749|gb|ACO85415.1| DNA topoisomerase III [Clostridium botulinum A2 str. Kyoto]
Length = 731
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ-----EARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|170756266|ref|YP_001780912.1| DNA topoisomerase III [Clostridium botulinum B1 str. Okra]
gi|169121478|gb|ACA45314.1| DNA topoisomerase III [Clostridium botulinum B1 str. Okra]
Length = 731
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ-----EARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|168185036|ref|ZP_02619700.1| DNA topoisomerase III [Clostridium botulinum Bf]
gi|182671913|gb|EDT83874.1| DNA topoisomerase III [Clostridium botulinum Bf]
Length = 731
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQ-----EARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSIDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|42557740|emb|CAF28714.1| putative DNA topoisomerase I [uncultured crenarchaeote]
Length = 715
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 11/206 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EKP A I+ VL + +K S + F+ + ++ V S +GH++ L
Sbjct: 14 LVICEKPLAAKRISQVLGSKNIIEKKYSLGIVVFEITSDKNQRFV-VCSALGHMYSLI-- 70
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDREGENI 123
P ++ + +P H +N + I L AR G + D D EGE I
Sbjct: 71 PLEKNRKKYPIYETVWSPKHSTVANQRKRILETLKVIARISEGASGYIHACDYDLEGELI 130
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKV 183
+ ++E + + RA+FSS+T+ +I ++ NL + + A A AR +D
Sbjct: 131 GYNILE---YACKHKYEQSRRAKFSSLTDSEINQSFNNLQQTDIRIAEAGKARHLVDFVF 187
Query: 184 GVAFTRFQTTYFQGKYGNLDSRFISL 209
G+ +R N D+R+ +L
Sbjct: 188 GINLSRALVNCLS--VANQDNRYYNL 211
>gi|378696167|ref|YP_005178125.1| DNA topoisomerase III [Haemophilus influenzae 10810]
gi|301168690|emb|CBW28281.1| dna topoisomerase iii (ec 5.99.1.2). dna topoisomerase iii (ec
5.99.1.2) [Haemophilus influenzae 10810]
gi|309750583|gb|ADO80567.1| DNA topoisomerase III [Haemophilus influenzae R2866]
Length = 681
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL----AVD 174
EGE I E+++ GF R ++ R S++ + I KA+G L N E L A
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDTSIRKALGAL--KNNEETLPLYYAGL 159
Query: 175 ARQEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
AR D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 160 ARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|145639532|ref|ZP_01795136.1| DNA topoisomerase III [Haemophilus influenzae PittII]
gi|145271323|gb|EDK11236.1| DNA topoisomerase III [Haemophilus influenzae PittII]
Length = 681
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL----AVD 174
EGE I E+++ GF R ++ R S++ + I KA+G L N E L A
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDTSIRKALGAL--KNNEETLPLYYAGL 159
Query: 175 ARQEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
AR D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 160 ARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|145631184|ref|ZP_01786958.1| DNA topoisomerase III [Haemophilus influenzae R3021]
gi|144983282|gb|EDJ90773.1| DNA topoisomerase III [Haemophilus influenzae R3021]
Length = 681
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL----AVD 174
EGE I E+++ GF R ++ R S++ + I KA+G L N E L A
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDTSIRKALGAL--KNNEETLPLYYAGL 159
Query: 175 ARQEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
AR D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 160 ARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|117925830|ref|YP_866447.1| DNA topoisomerase III [Magnetococcus marinus MC-1]
gi|117609586|gb|ABK45041.1| DNA topoisomerase III [Magnetococcus marinus MC-1]
Length = 744
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L + EKPS I VL +T HE G G A + VT +GH+ +
Sbjct: 2 ILYLCEKPSQGRDIGRVL---------GATSRHE--GYVAG--AGVCVTWCIGHLMEMVA 48
Query: 66 P----PAYQDWNASN-PLDLFQAPVH-KAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
P P ++ W P+ Q + A + + + L +G +VL D DRE
Sbjct: 49 PDGYRPEWKSWRLDTLPIIPQQWQLELTARGRKQFKVIQGL---LKGVTEVVLATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE I EV+E + R K+ R S++ + I KA+GNL+ + E L A R
Sbjct: 106 GETIGREVLERCQY-----RGKISRLWLSALDDASIRKALGNLLPGEQTEPLYQAGLGRS 160
Query: 178 EIDLKVGVAFTRFQTTY-FQGKYGNLDS 204
D VG+ TR T QG Y + S
Sbjct: 161 RADWMVGMNLTRAYTLLGRQGGYAGVLS 188
>gi|68248647|ref|YP_247759.1| DNA topoisomerase III [Haemophilus influenzae 86-028NP]
gi|68056846|gb|AAX87099.1| DNA topoisomerase III [Haemophilus influenzae 86-028NP]
Length = 686
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 8 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 56
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 57 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 111
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL----AVD 174
EGE I E+++ GF R ++ R S++ + I KA+G L N E L A
Sbjct: 112 EGETIARELLDLAGF-----RGQIKRLWLSALDDTSIRKALGAL--KNNEETLPLYYAGL 164
Query: 175 ARQEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
AR D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 165 ARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 210
>gi|170761575|ref|YP_001786678.1| DNA topoisomerase III [Clostridium botulinum A3 str. Loch Maree]
gi|169408564|gb|ACA56975.1| DNA topoisomerase III [Clostridium botulinum A3 str. Loch Maree]
Length = 731
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D K ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKKMKTAVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|410690003|ref|YP_006963723.1| DNA topoisomerase III [Salmonella sp. 14]
gi|389597123|gb|AFK89876.1| DNA topoisomerase III [Salmonella sp. 14]
Length = 501
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L +AEKPS+A + A+ L G + + S G ++ + VT + GH+ R
Sbjct: 3 ISTLWIAEKPSMAEAFASQL--GVINNKDHSL------GAYVSQDKSVVVTWLYGHLVRD 54
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDREG 120
P Y S L+ + P+ ++ H + + ++VL D DREG
Sbjct: 55 LMPEEYDPEMKSWKLETLPFFPQNWKKTPRENVVSHFQKVKKLIQAATNIVLATDFDREG 114
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E I E+++ G+ R KV R + K I K + N + N L A R+
Sbjct: 115 EVIGRELLDECGY-----RGKVERVNITGTDAKSISKCIENRFDGNIGLPLYYAGKGRER 169
Query: 179 IDLKVGVAFTR 189
D VG+ FTR
Sbjct: 170 ADWLVGLNFTR 180
>gi|451936139|ref|YP_007459993.1| DNA topoisomerase III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777062|gb|AGF48037.1| DNA topoisomerase III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 819
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A I+ L G K E++E + Y+ +TS +GH+ L
Sbjct: 3 KQLIIAEKPSVANDISKALGG-----FKKCNELYE-------NEDYV-ITSSIGHLLTLS 49
Query: 65 FP--PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQ--EARGCGHLVLWLDC 116
P P+ W+ S+ P P+ K S ++ I LN+ + + ++ D
Sbjct: 50 APNEPSRGKWSLSSLPIIPSKFELIPIDKKASE-RLKI---LNKSIKRKDITSIINACDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE I +IE +G +++++R F S+T+ I A NL + ++L A
Sbjct: 106 GREGELIFKYIIEFSG-----TKKQIYRLWFQSMTKDAIQTAFKNLKTDEQLKSLEYAAR 160
Query: 175 ARQEIDLKVGVAFTRFQTTY 194
+R E D +G+ TR T +
Sbjct: 161 SRAEADWLIGINGTRAMTAF 180
>gi|20091341|ref|NP_617416.1| DNA topoisomerase I [Methanosarcina acetivorans C2A]
gi|19916471|gb|AAM05896.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 752
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 31 RKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAES 90
R + +V+ ++ S V + GH+ +DF Y +W + L A +
Sbjct: 28 RVSGVDVYRYELGKGKSRQETAVVGLSGHIVGIDFQKEYNNWQKVDARALIDAEITTTPI 87
Query: 91 NPK-VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSS 149
N K V R L +EA + + D DREGE I E + +VN R R+S+
Sbjct: 88 NRKIVTALRTLGKEA---DRVTIATDYDREGELIGVEALNIIK-KVN-PEVPFDRVRYSA 142
Query: 150 VTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+T K I A N + + A A +RQ IDL G A TR Y G L F+S+
Sbjct: 143 ITPKAIDAAFTNPTSVDFDLADAGHSRQVIDLVWGAALTR----YISLAAGRLGKMFLSV 198
>gi|424065930|ref|ZP_17803403.1| DNA topoisomerase III [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440722628|ref|ZP_20903005.1| DNA topoisomerase III [Pseudomonas syringae BRIP34876]
gi|440726796|ref|ZP_20907046.1| DNA topoisomerase III [Pseudomonas syringae BRIP34881]
gi|408002834|gb|EKG43063.1| DNA topoisomerase III [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440361070|gb|ELP98316.1| DNA topoisomerase III [Pseudomonas syringae BRIP34876]
gi|440365557|gb|ELQ02653.1| DNA topoisomerase III [Pseudomonas syringae BRIP34881]
gi|449041170|gb|AGE82120.1| DNA topoisomerase III [Pseudomonas syringae pv. actinidiae]
gi|449041287|gb|AGE82236.1| DNA topoisomerase III [Pseudomonas syringae pv. actinidiae]
Length = 673
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G+ + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCIKGNG--VAVTWGIGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQA-PVH-----KAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
AY D + LD PV K +++ + I + L ++A LV+ D DREG
Sbjct: 50 DAYGDHLKNWSLDTLPILPVEWKVLVKPKTSSQFKIVKQLLKQAT---ELVIATDADREG 106
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQE 178
E I E+IE G+ R + R S++ E I +A+ + + + L + AR
Sbjct: 107 EMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSR 161
Query: 179 IDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 162 ADWLIGMNFSRLFT 175
>gi|328956997|ref|YP_004374383.1| DNA topoisomerase 3 [Carnobacterium sp. 17-4]
gi|328673321|gb|AEB29367.1| DNA topoisomerase 3 [Carnobacterium sp. 17-4]
Length = 691
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 27/201 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA VL T+K+ T + D + VT +GH+ L
Sbjct: 1 MKTLIIAEKPSVGKEIARVLGA----TQKSKTHIEGKD---------VIVTWALGHLLGL 47
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHI---CRHLNQEA--RGCGHLVLWLDCDR 118
P Y+ A+ L+ K + P + + + Q A + G V+ D R
Sbjct: 48 KMPEDYKAEWATWDLNALPLIPEKMTTKPLTNTRGQLKAIKQLANRKDIGSAVIATDAGR 107
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD---A 175
EGE + ++E F + V R SS T+K I N ++P++ D A
Sbjct: 108 EGELVARWILEYVNFN-----KPVKRLWISSQTDKAIKDGF-NQLQPSKKYDTLYDSAVA 161
Query: 176 RQEIDLKVGVAFTRFQTTYFQ 196
R E D +G+ TR T +Q
Sbjct: 162 RSEADWLIGLNVTRALTVKYQ 182
>gi|420170739|ref|ZP_14677298.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM070]
gi|394239791|gb|EJD85224.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM070]
Length = 645
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K +N + I + L + + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISK--TNRQFKIVKSLILD-KNVKEIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I +V S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQIVKS 200
>gi|326483026|gb|EGE07036.1| DNA topoisomerase III [Trichophyton equinum CBS 127.97]
Length = 137
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKAS----TEVHEFDGMFL-GSHAYIKVTS 55
M VL VAEKPSIA +IA L G ++ T + +EFD FL H + +TS
Sbjct: 1 MGVRTVLCVAEKPSIAKAIANHL-GDRVMTHNIQGNPYVKNYEFDYTFLQWGHCSVTMTS 59
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQA 83
V+GH+ DF P Y+ W + +P LF A
Sbjct: 60 VLGHLLSHDFEPRYKSWTSCDPSVLFNA 87
>gi|424826798|ref|ZP_18251654.1| DNA topoisomerase III [Clostridium sporogenes PA 3679]
gi|365980828|gb|EHN16852.1| DNA topoisomerase III [Clostridium sporogenes PA 3679]
Length = 731
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|345020404|ref|ZP_08784017.1| DNA topoisomerase III [Ornithinibacillus scapharcae TW25]
Length = 725
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 92/208 (44%), Gaps = 39/208 (18%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+ IA VL K + +G GS+ YI VT +GH+ L
Sbjct: 3 KTLVLAEKPSVGRDIARVLKCTK-----------QGNGFMEGSN-YI-VTWALGHLVTLA 49
Query: 65 FPPAYQDWNASNPL-DLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLVLWL 114
P AY D + L DL P SN K+ + + ++ + +V+
Sbjct: 50 DPEAYDDKYKTWRLEDLPMLP-----SNLKLVVMKQTGKQFSTVKTQMNRKDVNEIVIAT 104
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN----EA 170
D REGE + +IE + + V R SSVT+K I L +P +N A
Sbjct: 105 DAGREGELVARWIIEKARVE-----KPVKRLWISSVTDKAIRDGFKQL-KPGKNYENLYA 158
Query: 171 LAVDARQEIDLKVGVAFTRFQTTYFQGK 198
AV AR E D VG+ TR TT F +
Sbjct: 159 SAV-ARSEADWYVGLNATRALTTKFNAQ 185
>gi|408402639|ref|YP_006860622.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363235|gb|AFU56965.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 685
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L+V EKP A IA L G ++ A V FD S + KV S +GH++ L
Sbjct: 1 MYTLVVCEKPDAARRIAQAL-GDPKESKPAGISV--FD--VANSDCHYKVCSALGHLYGL 55
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKV-HICRHLNQEARGCGHLVLWLDCDREGEN 122
+ ++ + LDL APV K NP+ + +++ ++ V D D+EGE
Sbjct: 56 --ADSTKNRSVYPVLDLEWAPVDK---NPRAARAIKVISELSKNASAFVHACDYDQEGEV 110
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I +++ + K RA+FS++T+++I ++ +L P+ A A +R +D
Sbjct: 111 IGHNILQ---YACGGKYEKALRAKFSTLTDEEIRESFASLERPSGGLAEAGRSRHMLDFI 167
Query: 183 VGVAFTR 189
GV +R
Sbjct: 168 YGVNLSR 174
>gi|170722461|ref|YP_001750149.1| DNA topoisomerase III [Pseudomonas putida W619]
gi|169760464|gb|ACA73780.1| DNA topoisomerase III [Pseudomonas putida W619]
Length = 655
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL + DG G + + VT VGH+ P
Sbjct: 3 LFICEKPSQARDIARVLQASR-----------RGDGCLTGQN--LTVTWCVGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGENIC 124
Y D+ + DL P + + PKV + ++Q R C +V+ D DREGE I
Sbjct: 50 ETYGDYKRWSLDDLPIIPSRWQLVAKPKVAGQLKVISQLLRTCSEVVIATDADREGEMIA 109
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQEIDLK 182
E++E +Q + R S++ E I +A+ L + L AR D
Sbjct: 110 REILERCQYQG-----PILRLWLSALDETSIRRALSALRPGEQTLPLYHCALARSRADWL 164
Query: 183 VGVAFTRF 190
VG+ +R
Sbjct: 165 VGINLSRL 172
>gi|452744988|ref|ZP_21944827.1| DNA topoisomerase III [Mannheimia haemolytica serotype 6 str. H23]
gi|452087043|gb|EME03427.1| DNA topoisomerase III [Mannheimia haemolytica serotype 6 str. H23]
Length = 683
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 31/202 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS A +A+VL + DG+ + I VT GH+
Sbjct: 3 LFICEKPSQARDLASVLGA-----------TSKGDGLLATNDKSIIVTWGFGHLVEQYQP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
D+ ++ W P AP K ES + ++ L ++A +V+ D DR
Sbjct: 52 EDYDEVWKRWAFETLPIIPAQWKMAP--KKESKKQYNVVIGLIKKA---SLVVIATDADR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I E+++ G+ R ++ R S++ + I KA+ L EAL A R
Sbjct: 107 EGEMIARELLDLAGY-----RGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
D +G+ F+R T Q K
Sbjct: 162 SRSDWLIGMNFSRLFTLMAQAK 183
>gi|226324171|ref|ZP_03799689.1| hypothetical protein COPCOM_01950 [Coprococcus comes ATCC 27758]
gi|225207720|gb|EEG90074.1| DNA topoisomerase [Coprococcus comes ATCC 27758]
Length = 733
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 41/210 (19%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK + +G G YI VT +GH+ L
Sbjct: 1 MKALVIAEKPSVARDIARVLKCGK-----------KINGAIEGER-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHL 110
D+ Y++W + L + AP K+ + + ++ + +
Sbjct: 48 ADPEDYDKKYKEWKI-DVLPMKPAPF-------KLEVIKQTGKQFAAVKTQIHRKDVNEI 99
Query: 111 VLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
++ D REGE + ++E G +++ + R SSVT+K I + L + +A
Sbjct: 100 IIATDAGREGELVARLILEKAG-----SKKPIKRLWISSVTDKAIREGFAKLKNGHEYDA 154
Query: 171 L--AVDARQEIDLKVGVAFTRFQTTYFQGK 198
L A R E D VG+ TR T + +
Sbjct: 155 LYDAAMCRAEADWLVGINATRALTCKYNAQ 184
>gi|37525022|ref|NP_928366.1| DNA topoisomerase III [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784448|emb|CAE13332.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 676
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 80/197 (40%), Gaps = 34/197 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL K G G + VT VGH+ P
Sbjct: 3 LFLCEKPSQGRDIAVVLGATK-----------RGQGYLTGPG--VTVTWAVGHLLETASP 49
Query: 67 PAYQD-----WNASNPLDL---FQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
Y + W AS L +Q V K ++ ICR L Q +V+ D DR
Sbjct: 50 EVYGEQYGAPWRASVLPILPASWQMVVKKETADQFTVICRLLKQ----ADEVVIATDADR 105
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA---LAVDA 175
EGE I E+++ FQ K+ R S++ E I A+ N++ P A LA
Sbjct: 106 EGEVIARELLDYCQFQ-----GKISRLWLSALDEVSIRAALANIL-PGEQTASLYLAGLG 159
Query: 176 RQEIDLKVGVAFTRFQT 192
R D +G+ FTR T
Sbjct: 160 RARADWLIGMNFTRLYT 176
>gi|14521628|ref|NP_127104.1| DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|14423980|sp|Q9UYS8.1|TOP1_PYRAB RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5458847|emb|CAB50334.1| topA DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|380742240|tpe|CCE70874.1| TPA: DNA topoisomerase I [Pyrococcus abyssi GE5]
Length = 685
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKP++A IA LS + RK V ++ +F I V S VGH++ L
Sbjct: 2 ILVIAEKPNVARKIAGALS-ERRPIRKTIFGVPYYE-VFRDGKKLI-VASAVGHLYGL-- 56
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESN---PKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
QD+ D+ PV+ AE N K +I + L+ A+ ++ D D EGE
Sbjct: 57 -APKQDFFGYPIFDIEWVPVYIAEKNKDYAKDYI-KALSVLAKRVKEFIVACDYDTEGEV 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEID 180
I + ++ V+ +R K R +FS++T++D+L A NL EP N +A AR +D
Sbjct: 115 IGYTALK-YACGVDPSRAK--RMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARHVLD 170
Query: 181 LKVGVAFTRFQT 192
GV +R T
Sbjct: 171 WYWGVNLSRALT 182
>gi|148379270|ref|YP_001253811.1| DNA topoisomerase III [Clostridium botulinum A str. ATCC 3502]
gi|153931636|ref|YP_001383644.1| DNA topoisomerase III [Clostridium botulinum A str. ATCC 19397]
gi|153934966|ref|YP_001387193.1| DNA topoisomerase III [Clostridium botulinum A str. Hall]
gi|148288754|emb|CAL82838.1| putative DNA topoisomerase [Clostridium botulinum A str. ATCC 3502]
gi|152927680|gb|ABS33180.1| DNA topoisomerase III [Clostridium botulinum A str. ATCC 19397]
gi|152930880|gb|ABS36379.1| DNA topoisomerase III [Clostridium botulinum A str. Hall]
Length = 731
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|395207825|ref|ZP_10397230.1| DNA topoisomerase III [Oribacterium sp. ACB8]
gi|394706418|gb|EJF13931.1| DNA topoisomerase III [Oribacterium sp. ACB8]
Length = 568
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-RVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V KA + + +I + L + + ++ D R
Sbjct: 50 DAYDEKYAKWNMADLPIIPSD-YKYEVAKA-TKKQFNILKKLMND-KEVDTVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLKDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|395444048|ref|YP_006384301.1| DNA topoisomerase III [Pseudomonas putida ND6]
gi|388558045|gb|AFK67186.1| DNA topoisomerase III [Pseudomonas putida ND6]
Length = 655
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 22/188 (11%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL + DG G + + VT VGH+ P
Sbjct: 3 LFICEKPSQARDIARVLQASR-----------RGDGYLEGQN--LTVTWCVGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCDREGENIC 124
Y D+ + DL P K S PKV ++Q R C +V+ D DREGE I
Sbjct: 50 ETYGDYKRWSLDDLPIIPSQWKLVSKPKVAGQLNAISQLLRTCSEVVIATDADREGEMIA 109
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQEIDLK 182
E++E + + R S++ E I +A+ L + +L AR D
Sbjct: 110 REILERCQYH-----GPILRLWLSALDEASIRRALSALRPGEQTLSLYHCALARSRADWL 164
Query: 183 VGVAFTRF 190
VG+ +R
Sbjct: 165 VGINLSRL 172
>gi|418966048|ref|ZP_13517800.1| DNA topoisomerase III [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340925|gb|EID19204.1| DNA topoisomerase III [Streptococcus constellatus subsp.
constellatus SK53]
Length = 567
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y+ V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGYM-VSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V KA + + +I + L + ++ D R
Sbjct: 50 NAYDEKYAKWNMADLPIIPSD-YKYEVAKA-TKKQFNILKKL-MNNKEIDMVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|418605528|ref|ZP_13168846.1| DNA topoisomerase [Staphylococcus epidermidis VCU041]
gi|374401976|gb|EHQ73022.1| DNA topoisomerase [Staphylococcus epidermidis VCU041]
Length = 504
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K +N + I + L + + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISK--TNRQFKIVKSLILD-KNVKEIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I +V S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQIVKS 200
>gi|440746017|ref|ZP_20925304.1| DNA topoisomerase III [Pseudomonas syringae BRIP39023]
gi|440371838|gb|ELQ08670.1| DNA topoisomerase III [Pseudomonas syringae BRIP39023]
Length = 673
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 31/195 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G+ + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCIKGNG--VAVTWGIGHLLETAPP 49
Query: 67 PAYQD----WNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY D W+ L + A + K +++ + I + L ++A LV+ D DRE
Sbjct: 50 DAYGDHLKNWSLET-LPILPAEWKVLVKPKTSSQFKIVKQLLKQAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R V R S++ E I +A+ + E + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPVQRLWLSALNEASIRQALNTVKEGSETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 161 RADWLIGMNFSRLFT 175
>gi|417645730|ref|ZP_12295623.1| DNA topoisomerase [Staphylococcus epidermidis VCU144]
gi|329731195|gb|EGG67565.1| DNA topoisomerase [Staphylococcus epidermidis VCU144]
Length = 504
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNDYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K +N + I + L + + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISK--TNRQFKIVKSLILD-KNVKEIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I +V S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQIVKS 200
>gi|255517796|ref|ZP_05385472.1| putative DNA topoisomerase [Clostridium difficile QCD-97b34]
Length = 622
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFVPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEYEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|124265458|ref|YP_001019462.1| DNA topoisomerase III [Methylibium petroleiphilum PM1]
gi|124258233|gb|ABM93227.1| DNA topoisomerase [Methylibium petroleiphilum PM1]
Length = 879
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A I L+ S + + D F H Y+ VTS VGH+ +
Sbjct: 19 KALVIAEKPSVAQDIVRALT-------PTSGKFEKHDDHFENEH-YV-VTSAVGHLVEIK 69
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P Y W+ ++ P AP+ KA+S + + + + + G L+ D
Sbjct: 70 APEEYDVKRGKWSFAHLPVIPPHFDLAPIDKAKSRLNA-VVKQVKR--KDVGELINACDA 126
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
REGE I +++ G + + V R S+T + I L R A A
Sbjct: 127 GREGELIFRLIVQYAGTEKKPIDKPVRRLWLQSMTPQAIRDGFERLRSDADLRGLADAAR 186
Query: 175 ARQEIDLKVGVAFTRFQTTY 194
+R E D VG+ TR T +
Sbjct: 187 SRSEADWLVGINGTRAMTAF 206
>gi|410690199|ref|YP_006963918.1| DNA topoisomerase III [Salmonella sp. 40]
gi|389597500|gb|AFK90251.1| DNA topoisomerase III [Salmonella sp. 40]
Length = 668
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L +AEKPS+A + A L G + + S G ++ + VT + GH+ R
Sbjct: 3 ISTLWIAEKPSMAEAFANQL--GVINNKDHSL------GAYVSQDKSVVVTWLYGHLVRD 54
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDREG 120
P Y S L+ + P+ ++ H + + ++VL D DREG
Sbjct: 55 LMPEEYDPEMKSWKLETLPFFPQNWKKTPRENVVSHFQKVKKLIQAATNIVLATDFDREG 114
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E I E+++ G+ R KV R + K I K + N + N L A R+
Sbjct: 115 EVIGRELLDECGY-----RGKVERVNITGTDAKSISKCIENRFDGNIGLPLYYAGKGRER 169
Query: 179 IDLKVGVAFTR 189
D VG+ FTR
Sbjct: 170 ADWLVGLNFTR 180
>gi|229847015|ref|ZP_04467121.1| DNA topoisomerase III [Haemophilus influenzae 7P49H1]
gi|229810099|gb|EEP45819.1| DNA topoisomerase III [Haemophilus influenzae 7P49H1]
Length = 681
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I E+++ GF R ++ R S++ + I KA+G L + L A AR
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDASIRKALGALKDNEETLPLYYAGLAR 161
Query: 177 QEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 162 SRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|451945667|ref|YP_007466262.1| DNA topoisomerase III [Desulfocapsa sulfexigens DSM 10523]
gi|451905015|gb|AGF76609.1| DNA topoisomerase III [Desulfocapsa sulfexigens DSM 10523]
Length = 821
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 38/212 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A +A VL G +T+ T+ H S ++I V+ +GH+ +
Sbjct: 4 KTLIIAEKPSVAADLAKVLPGK--FTK---TKTH------YESDSHI-VSYAIGHLVAIQ 51
Query: 65 FP----PAYQDWNASN--------PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVL 112
+P P Y+ W+ SN PL Q + + K+ + + + C
Sbjct: 52 YPEEIDPKYKSWDLSNLPILPEEFPLKGLQGTTAQLNALQKLIRRKDVTEIINAC----- 106
Query: 113 WLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALA 172
D REGE + F+ I + + + +K+ R S+T I +A NL E +E LA
Sbjct: 107 --DAGREGE-LIFKYILRYVWNKSVSGKKLKRLWLQSMTRDSIKEAFANLRE--NDEMLA 161
Query: 173 VD----ARQEIDLKVGVAFTRFQTTYFQGKYG 200
++ R E D +G+ TR T + K G
Sbjct: 162 LEDAALCRSESDWLIGLNATRALTGFNSRKGG 193
>gi|242398970|ref|YP_002994394.1| DNA topoisomerase I [Thermococcus sibiricus MM 739]
gi|242265363|gb|ACS90045.1| DNA topoisomerase I [Thermococcus sibiricus MM 739]
Length = 1228
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++AEKP++A IA L+ K RK +V ++ G I V VGH+F L
Sbjct: 1 MTTLIIAEKPNVAKKIAYALAERKP-IRKTIGKVPYYELTRDGKK--IIVAPAVGHLFSL 57
Query: 64 DFPPAYQDWNASNPL-DLFQAPVHKAE---SNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
A ++ P+ D+ PV+ AE S K +I + L + A+ V+ D D E
Sbjct: 58 ----APKERTYGYPVFDIDWVPVYLAEKGKSYTKDYI-KALKELAKQADEFVIACDYDTE 112
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--- 175
GE I + ++ G + + A+R +FS++T++D+L+A NL EP N +A DA
Sbjct: 113 GEVIGYTALKYACGVEPSKAKR----MKFSALTKQDLLRAWYNL-EPTINFGMA-DAGIT 166
Query: 176 RQEIDLKVGVAFTR 189
R +D GV +R
Sbjct: 167 RHILDWYWGVNLSR 180
>gi|209947528|ref|YP_002291025.1| DNA topoisomerase III [Haemophilus influenzae]
gi|51507270|emb|CAF29019.1| DNA topoisomerase III [Haemophilus influenzae]
Length = 681
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA VL K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKVLGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I E+++ GF R ++ R S++ + I KA+G L + L A AR
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDASIRKALGALKDNEETLPLYYAGLAR 161
Query: 177 QEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 162 SRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|239625257|ref|ZP_04668288.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519487|gb|EEQ59353.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 732
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL GK +G G YI VT +GH+ L
Sbjct: 1 MKSLVIAEKPSVARDIARVLKCGK-----------NINGAIEGDR-YI-VTWGLGHLVTL 47
Query: 64 ----DFPPAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
D+ Y++W + P+ D+F+ V + + ++++ G +++ D
Sbjct: 48 ADPEDYDKKYKEWKMEDLPMVPDVFKLEVIGQTAKQYHAVKAQIHRQ--DVGEIIIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + +++ G + + + R SSVT+K I + +L + ++L A
Sbjct: 106 GREGELVARLILKKAG-----SSKPIKRLWISSVTDKAIREGFAHLKDGREYDSLYDAAM 160
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T + +
Sbjct: 161 CRAEADWLVGINATRALTCKYNAQ 184
>gi|313890983|ref|ZP_07824604.1| DNA topoisomerase [Streptococcus pseudoporcinus SPIN 20026]
gi|416850930|ref|ZP_11908271.1| DNA topoisomerase III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120607|gb|EFR43725.1| DNA topoisomerase [Streptococcus pseudoporcinus SPIN 20026]
gi|356740609|gb|EHI65832.1| DNA topoisomerase III [Streptococcus pseudoporcinus LQ 940-04]
Length = 570
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 4 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 50
Query: 66 PPAYQD----WNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P AY + WN S+ P+ + ++ V KA + + +I + L + + ++ D R
Sbjct: 51 PDAYDEKYAKWNISDLPIIPNQYKFEVAKA-TKKQFNILKKLMND-KEIETVINACDAGR 108
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 109 EGESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGEDYDKLFESAQAR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + ++ Y
Sbjct: 164 AIADWLVGMNISRLYSCLYKQNYS 187
>gi|418034477|ref|ZP_12672949.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351468730|gb|EHA28939.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 727
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L S YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLESDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|237794580|ref|YP_002862132.1| DNA topoisomerase III [Clostridium botulinum Ba4 str. 657]
gi|229260917|gb|ACQ51950.1| DNA topoisomerase III [Clostridium botulinum Ba4 str. 657]
Length = 731
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
KVL++AEKPS+ +A VL K + +G +L + YI VT +GH+ L
Sbjct: 3 KVLVLAEKPSVGRDLAKVLKCNK-----------KGNG-YLEGNKYI-VTWALGHLITLS 49
Query: 65 FPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE-----ARGCGHLVLWLDCDRE 119
P +Y + +D + ++ +H ++ + LV+ D RE
Sbjct: 50 DPESYDEKYKKWSIDTLPMLPKRMKTTVIKKTSKHFSEVRKVMIRKDVEELVIATDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN-EALAVDA--R 176
GE + +I+ GF ++ + R SS T+K IL NL +P +N E L A R
Sbjct: 110 GELVARWIIDKVGF-----KKPIKRLWISSQTDKAILDGFRNL-KPGKNYENLYHSAVCR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
E D VG+ TR T + +
Sbjct: 164 SEADWIVGLNVTRALTCRYNAQ 185
>gi|403071249|ref|ZP_10912581.1| DNA topoisomerase 3 [Oceanobacillus sp. Ndiop]
Length = 206
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
L++AEKPS A + A L +T+K + DG F AYI T GH+ L
Sbjct: 4 TLILAEKPSQAKAYADALQ----HTKKQDGYIEVNDGRFFKEKAYI--TWGYGHLVELLS 57
Query: 66 PPAYQD----WNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P Y + W P+ + F+ V K + + R LN A +++ DCDR
Sbjct: 58 PEQYNETWKIWRLDQLPMFPEQFRFQVSKDKKKQFNIVKRLLNDSA----EIIVATDCDR 113
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--R 176
EGENI +I G + + R +S+ +I K +L +L +A R
Sbjct: 114 EGENIARSIISLAG----ASHKPTKRLWINSLEVDEIQKGFRHLNNGINYLSLYKEAQTR 169
Query: 177 QEIDLKVGVAFTRFQTTYFQGK 198
Q D VG+ +R T Q K
Sbjct: 170 QYSDWLVGMNASRLYTLLLQKK 191
>gi|343525813|ref|ZP_08762768.1| DNA topoisomerase III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343396083|gb|EGV08621.1| DNA topoisomerase III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 568
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-KVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN + P D ++ V KA + + +I + L + + ++ D R
Sbjct: 50 DAYNEKYAKWNIEDLPIIPSD-YKYEVAKA-TKKQFNILKKLMND-KEIDTVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 107 EGESI-FRLV----YSEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGEDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNYS 185
>gi|386343544|ref|YP_006035239.1| DNA topoisomerase III [Shewanella baltica OS117]
gi|334865960|gb|AEH16413.1| DNA topoisomerase III [Shewanella baltica OS117]
Length = 707
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA+VL DG+F G I VT VGHV + P
Sbjct: 3 LFLCEKPSQAKDIASVLG------------CKRGDGVFTGDG--IAVTFCVGHVLQQAEP 48
Query: 67 PAYQ-DWNASNPLDLFQAPVH-KAESNPKVHICRHL-NQEARGCGHLVLWLDCDREGENI 123
Y D+ N +DL P K +PK + ++ +++ D DREGE I
Sbjct: 49 ENYNPDFETWNIVDLPIIPTAWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVI 108
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA---RQEID 180
EV+E + + + R S++ + I KA+ +L PN A DA R D
Sbjct: 109 AREVLEYVNY-----KGPIQRLWLSALDDASIKKALASL-RPNHETAKLYDAGLGRSRGD 162
Query: 181 LKVGVAFTRFQTTYFQGKYG 200
+G+ TR T +YG
Sbjct: 163 WLIGMNMTRL-CTLLSREYG 181
>gi|378951247|ref|YP_005208735.1| protein TopB [Pseudomonas fluorescens F113]
gi|359761261|gb|AEV63340.1| TopB [Pseudomonas fluorescens F113]
Length = 656
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 79/194 (40%), Gaps = 29/194 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL + DG +G VT +GH+ P
Sbjct: 3 LFLCEKPSQGRDIAKVLGASR-----------RGDGCLIGRET--TVTWCIGHLLETAPP 49
Query: 67 PAYQDWNASNPLD-LFQAPVH-KAESNPKV----HICRHLNQEARGCGHLVLWLDCDREG 120
AY D + LD L P + E PK I +HL EA +V+ D DREG
Sbjct: 50 EAYGDQYKTWSLDHLPIIPAQWRVEVKPKTVAQFKIIKHLLSEAT---TVVIATDADREG 106
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E I E++E + R V R S++ E I KA+ +L L + AR
Sbjct: 107 EMIARELLELCNY-----RGSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARSR 161
Query: 179 IDLKVGVAFTRFQT 192
D +G+ +R T
Sbjct: 162 ADWLIGMNLSRLFT 175
>gi|423566637|ref|ZP_17542909.1| DNA topoisomerase III [Bacillus cereus MSX-A1]
gi|401189404|gb|EJQ96455.1| DNA topoisomerase III [Bacillus cereus MSX-A1]
Length = 519
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 53 VTSVVGHVFRLDFPPAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCG 108
+T +GH+ L P Y + WN + L + + SN KV + + +
Sbjct: 45 LTWAIGHLVTLYDPVDYDEKLKYWNLKD-LPIIPSEFKFKVSNNKVEQFNTIKKLMKDAS 103
Query: 109 HLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN 168
+V+ D DREGENI + +I TG + + R +S+ EK++ K NL + N+
Sbjct: 104 DVVIATDADREGENIAYSIIRLTG----GGEKPLRRLWINSLVEKEVRKGFENLKDANQF 159
Query: 169 EAL--AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ ARQ D VG+ TR + Q K
Sbjct: 160 VSYYHEAQARQVSDWLVGLNGTRLYSGLLQKK 191
>gi|399924940|ref|ZP_10782298.1| DNA topoisomerase [Peptoniphilus rhinitidis 1-13]
Length = 606
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 27/202 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 40 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 86
Query: 66 PPAYQD----WNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
P AY + WN S+ P+ Q A++ K +I + L + + ++ D RE
Sbjct: 87 PDAYDEKYAKWNISDLPIIPKQYKFEVAKATKKQFNILKKLMND-KEIDTVINACDAGRE 145
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 146 GESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGKDYDKLFESAQARA 200
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + ++ Y
Sbjct: 201 IADWLVGMNISRLYSCLYKQNY 222
>gi|342217727|ref|ZP_08710366.1| DNA topoisomerase [Megasphaera sp. UPII 135-E]
gi|341593390|gb|EGS36240.1| DNA topoisomerase [Megasphaera sp. UPII 135-E]
Length = 570
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 4 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 50
Query: 66 PPAYQD----WNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
P AY + WN S+ P+ Q A++ K +I + L + + ++ D RE
Sbjct: 51 PDAYDEKYAKWNISDLPIIPKQYKFEVAKATKKQFNILKKLMND-KEIDTVINACDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 110 GESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGEDYDKLFESAQARA 164
Query: 178 EIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + ++ Y
Sbjct: 165 IADWLVGMNISRLYSCLYKQNYS 187
>gi|332800409|ref|YP_004461908.1| DNA topoisomerase III [Tepidanaerobacter acetatoxydans Re1]
gi|332698144|gb|AEE92601.1| DNA topoisomerase III [Tepidanaerobacter acetatoxydans Re1]
Length = 732
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA V++ GK +G +L YI +T +GH+ L
Sbjct: 3 KTLVLAEKPSVARDIARVMNCGK-----------NGNG-YLEGQKYI-ITWALGHLVTLA 49
Query: 65 FPPA----YQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P A Y+ W + P DL + ++ + + +N+ +V+ D
Sbjct: 50 EPEAYGNRYKSWRMEDLPILPKDLKLEIIKQSRRQFNI-VKEQMNRN--DVNSIVIATDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD-- 174
REGE + +I ++ + ++ + R SSVT+K I NL + + E L
Sbjct: 107 GREGELVARWII-----KMANVKKPIKRLWISSVTDKAIRDGFNNLKDGKQYENLYASAV 161
Query: 175 ARQEIDLKVGVAFTRFQT 192
AR E D VG+ TR T
Sbjct: 162 ARAEADWLVGINATRALT 179
>gi|423602120|ref|ZP_17578120.1| DNA topoisomerase 3 [Bacillus cereus VD078]
gi|401226835|gb|EJR33366.1| DNA topoisomerase 3 [Bacillus cereus VD078]
Length = 728
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA VL K + +G FL YI VT +GH+ L
Sbjct: 3 KSLVLAEKPSVARDIANVLKCNK-----------KGNG-FLEGDKYI-VTWALGHLVTLA 49
Query: 65 FP----PAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P YQ WN + P+ D + V K + LN+ +++ D
Sbjct: 50 DPEMYDKKYQKWNLEDLPMLPDRLKLSVIKQSGKQFNSVKSQLNRN--DVNEIIIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVD 174
REGE + +I + +VN + + R SSVT+K I NL +P + N
Sbjct: 108 REGELVARWIIAKS--KVN---KPIKRLWISSVTDKAIKDGFNNL-KPGKAYENLYFTAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR E D +G+ TR TT + +
Sbjct: 162 ARSEADWYIGLNATRALTTKYNAQ 185
>gi|431795310|ref|YP_007222215.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785536|gb|AGA70819.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 727
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 29/216 (13%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++ EKPS+ IA +L + +G F+GS YI VT +GH+ L
Sbjct: 3 KSLVLTEKPSVGRDIAKLLGCN-----------QKGNGCFIGSR-YI-VTWALGHLVTLA 49
Query: 65 FPPAYQDWNASNPL-DLFQAP-----VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P AY D + L DL P V E++ + + L ++ L++ D R
Sbjct: 50 EPEAYGDQYKTWRLEDLPMLPKQMELVVIKETSKQYSAVKQLLRQP-DVEELIIATDAGR 108
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE + +I+ G+ R+ + R SS T+K I + NL E+L A + R
Sbjct: 109 EGELVARWIIQKAGW-----RKPIKRLWISSQTDKAIKEGFNNLKPGKAYESLYAAAECR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
+ D VG+ TR T + + G + + ++LV
Sbjct: 164 AQADWYVGLNVTRALTCKYNAQLSAGRVQTPTLALV 199
>gi|229589478|ref|YP_002871597.1| DNA topoisomerase III [Pseudomonas fluorescens SBW25]
gi|229361344|emb|CAY48214.1| DNA topoisomerase III [Pseudomonas fluorescens SBW25]
Length = 655
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IATVL TR+ DG +G+ VT +GH+ P
Sbjct: 3 LFLCEKPSQGRDIATVLGA----TRRG-------DGCLIGTET--TVTWCIGHLLETAPP 49
Query: 67 PAY----QDWNASN-PLDLFQAPVH-KAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
AY ++W+ + P+ Q V K ++ + + + L EA +V+ D DREG
Sbjct: 50 EAYGIQYKNWSLDHLPIIPAQWKVEVKHKTAAQFKVIKRLLSEASA---VVIATDADREG 106
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E I E++E + R V R S++ E ILKA+ +L L + AR
Sbjct: 107 EMIARELLELCNY-----RGPVERLWLSALNEVSILKALSSLKSGQETFPLYHSALARSR 161
Query: 179 IDLKVGVAFTRFQT 192
D +G+ +R T
Sbjct: 162 ADWLIGMNLSRLFT 175
>gi|393202220|ref|YP_006464062.1| topoisomerase IA [Solibacillus silvestris StLB046]
gi|327441551|dbj|BAK17916.1| topoisomerase IA [Solibacillus silvestris StLB046]
Length = 732
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL + H+ FL YI VT +GH+ L
Sbjct: 5 VKSLVLAEKPSVARDIANVL------------KCHKKGNGFLEGDKYI-VTWALGHLVTL 51
Query: 64 DFPPAYQD----WNASN-PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P +Y + W+ ++ P+ + + + K + +++ D R
Sbjct: 52 ADPESYDEKYKKWDLADLPMLPERLKLTTIKQTSKQYNAVKSQLTRNDVNEIIIATDAGR 111
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE + +IE +VN + V R SSVT+K I + NL E L A AR
Sbjct: 112 EGELVARWIIERA--KVN---KPVKRLWISSVTDKAIKEGFANLKPGKAYENLYYAAVAR 166
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
E D +G+ +R +T F + G + + +++V
Sbjct: 167 SEADWYIGLNASRALSTKFNAQLNTGRVQTPVVAMV 202
>gi|406665530|ref|ZP_11073303.1| DNA topoisomerase 3 [Bacillus isronensis B3W22]
gi|405386770|gb|EKB46196.1| DNA topoisomerase 3 [Bacillus isronensis B3W22]
Length = 729
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL + H+ FL YI VT +GH+ L
Sbjct: 2 VKSLVLAEKPSVARDIANVL------------KCHKKGNGFLEGDKYI-VTWALGHLVTL 48
Query: 64 DFPPAYQD----WNASN-PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P +Y + W+ ++ P+ + + + K + +++ D R
Sbjct: 49 ADPESYDEKYKKWDLADLPMLPERLKLTTIKQTSKQYNAVKSQLTRNDVNEIIIATDAGR 108
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE + +IE +VN + V R SSVT+K I + NL E L A AR
Sbjct: 109 EGELVARWIIERA--KVN---KPVKRLWISSVTDKAIKEGFANLKPGKAYENLYYAAVAR 163
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
E D +G+ +R +T F + G + + +++V
Sbjct: 164 SEADWYIGLNASRALSTKFNAQLNTGRVQTPVVAMV 199
>gi|438003797|ref|YP_007273540.1| DNA topoisomerase III [Tepidanaerobacter acetatoxydans Re1]
gi|432180591|emb|CCP27564.1| DNA topoisomerase III [Tepidanaerobacter acetatoxydans Re1]
Length = 732
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA V++ GK +G +L YI +T +GH+ L
Sbjct: 3 KTLVLAEKPSVARDIARVMNCGK-----------NGNG-YLEGQKYI-ITWALGHLVTLA 49
Query: 65 FPPA----YQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P A Y+ W + P DL + ++ + + +N+ +V+ D
Sbjct: 50 EPEAYGNRYKSWRMEDLPILPKDLKLEIIKQSRRQFNI-VKEQMNRN--DVNSIVIATDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD-- 174
REGE + +I ++ + ++ + R SSVT+K I NL + + E L
Sbjct: 107 GREGELVARWII-----KMANVKKPIKRLWISSVTDKAIRDGFNNLKDGKQYENLYASAV 161
Query: 175 ARQEIDLKVGVAFTRFQT 192
AR E D VG+ TR T
Sbjct: 162 ARAEADWLVGINATRALT 179
>gi|295093476|emb|CBK82567.1| DNA topoisomerase III, bacteria and conjugative plasmid
[Coprococcus sp. ART55/1]
Length = 703
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A SIA VL + DG F G Y+ V+ VGH+ L P
Sbjct: 3 LVIAEKPSVAKSIADVLGA-----------LDRQDGYFEGG-GYL-VSWCVGHLIELAEP 49
Query: 67 PAY-QDWNASNPLDLFQAPVH-----KAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+Y + W L P H K ++ + + L ++R +V D REG
Sbjct: 50 ESYGEQWKKWTYESLPVNPEHWQYEIKEDTKEQYDVLYGLLHDSR-VDEVVCATDAGREG 108
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--RQE 178
E + F ++ + + ++ + R SS+ E I + + NL + + L A RQE
Sbjct: 109 E-LIFRLV----YNMASCKKPMKRLWISSMEESAIREGVENLKPGSDYDHLYHSALCRQE 163
Query: 179 IDLKVGVAFTRFQTTYFQGK 198
D VG+ TR T + GK
Sbjct: 164 ADWLVGINGTRLFTVLYGGK 183
>gi|317500032|ref|ZP_07958267.1| DNA topoisomerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087737|ref|ZP_08336663.1| hypothetical protein HMPREF1025_00246 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438166|ref|ZP_08617807.1| hypothetical protein HMPREF0990_00201 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898517|gb|EFV20553.1| DNA topoisomerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409718|gb|EGG89154.1| hypothetical protein HMPREF1025_00246 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015210|gb|EGN45034.1| hypothetical protein HMPREF0990_00201 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 680
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L +AEKPS+A A L KL TR+A DG A I T VGH+ +
Sbjct: 3 KQLYIAEKPSVAQEFAKAL---KLKTRRA-------DGYLESDEAVI--TWCVGHLVTMS 50
Query: 65 FP----PAYQDWNASN-PLDLFQAPVHKAESNPKVH-----ICRHLNQEARGCGHLVLWL 114
+P PA + W+ P F K E P V + LN+E + +
Sbjct: 51 YPEEYDPALKKWSLQTLP---FIPSEFKYEVIPSVAKQFQIVSSLLNRE--DVDTIYVCT 105
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D REGE I + ++E QV+ +R R S TE++IL+ + + + + L+
Sbjct: 106 DSGREGEYI-YRLVEQKA-QVSGKKR--LRVWIDSQTEEEILRGIREAKDLSEYDNLSAS 161
Query: 175 A--RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFS 212
A R + D +G+ F+R T KYGN S +++ +S
Sbjct: 162 AYLRAKEDYLMGINFSRLLTL----KYGNSISNYLNTKYS 197
>gi|329921999|ref|ZP_08277806.1| DNA topoisomerase [Paenibacillus sp. HGF5]
gi|328942459|gb|EGG38722.1| DNA topoisomerase [Paenibacillus sp. HGF5]
Length = 763
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKP + +IA V+ R +L YI +T +GH+ L
Sbjct: 1 MKTLVIAEKPDMGRNIAAVIEPRAKNNR-----------TYLEGEQYI-ITWAIGHLVGL 48
Query: 64 DFP----PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCD 117
P P Y+ WN DL P K NPK + + + A+ C H+V D
Sbjct: 49 AEPDAYDPKYKRWNLR---DLPIIPEQFKIIPNPKTKDQLKVIGEVAKRCSHIVNACDAG 105
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDA 175
REG+ I F +I+ Q ++ V R S +T + I + L + E L A A
Sbjct: 106 REGQYI-FALIQ----QQLKLKQPVKRLWISDLTPESIGRGFAELKDGVEFENLTQAARA 160
Query: 176 RQEIDLKVGVAFTRFQTTYFQG--KYGNLDSRFISLVF 211
R E D +G+ +R TT Q G + + ++L++
Sbjct: 161 RSEADWLIGMNASRAFTTRHQTLLSVGRVQTPVLALIY 198
>gi|335050236|ref|ZP_08543210.1| DNA topoisomerase [Megasphaera sp. UPII 199-6]
gi|333757567|gb|EGL35127.1| DNA topoisomerase [Megasphaera sp. UPII 199-6]
Length = 570
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 4 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 50
Query: 66 PPAYQD----WNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
P AY + WN S+ P+ Q A++ K +I + L + + ++ D RE
Sbjct: 51 PDAYDEKYAKWNISDLPIIPKQYKFEVAKATKKQFNILKKLMND-KEIDTVINACDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 110 GESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGKDYDKLFESAQARA 164
Query: 178 EIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + ++ Y
Sbjct: 165 IADWLVGMNISRLYSCLYKQNYS 187
>gi|261406252|ref|YP_003242493.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
gi|261282715|gb|ACX64686.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
Length = 762
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKP + +IA V+ R +L YI +T +GH+ L
Sbjct: 1 MKTLVIAEKPDMGRNIAAVIEPRAKNNR-----------TYLEGEQYI-ITWAIGHLVGL 48
Query: 64 DFP----PAYQDWNASNPLDLFQAPVH-KAESNPKVH-ICRHLNQEARGCGHLVLWLDCD 117
P P Y+ WN DL P K NPK + + + A+ C H+V D
Sbjct: 49 AEPDAYDPKYKRWNLR---DLPIIPEQFKIIPNPKTKDQLKVIGEVAKRCSHIVNACDAG 105
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDA 175
REG+ I F +I+ Q ++ V R S +T + I + L + E L A A
Sbjct: 106 REGQYI-FALIQ----QQLKLKQPVKRLWISDLTPESIGRGFAELKDGVEFENLTQAARA 160
Query: 176 RQEIDLKVGVAFTRFQTTYFQG--KYGNLDSRFISLVF 211
R E D +G+ +R TT Q G + + ++L++
Sbjct: 161 RSEADWLIGMNASRAFTTRHQTLLSVGRVQTPVLALIY 198
>gi|153814317|ref|ZP_01966985.1| hypothetical protein RUMTOR_00527 [Ruminococcus torques ATCC 27756]
gi|145848713|gb|EDK25631.1| DNA topoisomerase [Ruminococcus torques ATCC 27756]
Length = 680
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L +AEKPS+A A L KL TR+A DG A I T VGH+ +
Sbjct: 3 KQLYIAEKPSVAQEFAKAL---KLKTRRA-------DGYLESDEAVI--TWCVGHLVTMS 50
Query: 65 FP----PAYQDWNASN-PLDLFQAPVHKAESNPKVH-----ICRHLNQEARGCGHLVLWL 114
+P PA + W+ P F K E P V + LN+E + +
Sbjct: 51 YPEEYDPALKKWSLQTLP---FIPSEFKYEVIPSVAKQFQIVSSLLNRE--DVDTIYVCT 105
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D REGE I + ++E QV+ +R R S TE++IL+ + + + + L+
Sbjct: 106 DSGREGEYI-YRLVEQKA-QVSGKKR--LRVWIDSQTEEEILRGIREAKDLSEYDNLSAS 161
Query: 175 A--RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFS 212
A R + D +G+ F+R T KYGN S +++ +S
Sbjct: 162 AYLRAKEDYLMGINFSRLLTL----KYGNSISNYLNTKYS 197
>gi|345429783|ref|YP_004822901.1| DNA topoisomerase III [Haemophilus parainfluenzae T3T1]
gi|301155844|emb|CBW15312.1| dna topoisomerase iii (ec 5.99.1.2) [Haemophilus parainfluenzae
T3T1]
Length = 681
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS IA +L K +G + VT +GH+
Sbjct: 3 LFLCEKPSQGNDIAKILGATK-----------RGEGCLSTPDGQLTVTWGIGHLVEQFNP 51
Query: 64 -DFPPAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
++ PA++ W P +P K E+ + ++ L ++A+ +V+ D DR
Sbjct: 52 EEYDPAFKKWAFETLPIIPGKWGLSP--KKETKKQFNVVMKLIKQAK---LVVIATDIDR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I E+++ GF R ++ R S++ + I KA+G L + L A AR
Sbjct: 107 EGETIARELLDLAGF-----RGQIKRLWLSALDDASIRKALGALKDNEETLPLYYAGLAR 161
Query: 177 QEIDLKVGVAFTRF-----QTTYFQGK---YGNLDSRFISLVFS 212
D +G+ F+R Q +QGK G + + +SLV +
Sbjct: 162 SRADWLIGMNFSRIYTLLAQQQGYQGKPLSVGRVQTPTLSLVVN 205
>gi|256810677|ref|YP_003128046.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
gi|256793877|gb|ACV24546.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
Length = 759
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++ EKPS+A IA L K +K+ V ++ G I V S VGH+F L
Sbjct: 1 MTALIICEKPSVAKKIANALGKAK---KKSIDGVPYYELERDGKK--IIVASAVGHLFTL 55
Query: 64 DFPPAYQDWNASNPLDLFQAPVH----KAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+++ D+ P K N + + L++EA + D D E
Sbjct: 56 -VEKENKEFGTYPVFDVKWVPASVDKGKEYVNKYIKALKKLSKEAN---EFYVATDWDIE 111
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GE I + ++ C G R K R RFSS+T+K+I+KA N E + A ++R
Sbjct: 112 GELIGYHALKYCCG------REKAKRMRFSSLTKKEIVKAFENPDEIDYGLVDAGESRHI 165
Query: 179 IDLKVGVAFTR 189
+D G+ +R
Sbjct: 166 VDWYFGINLSR 176
>gi|350565412|ref|ZP_08934182.1| DNA topoisomerase TopB [Peptoniphilus indolicus ATCC 29427]
gi|348663803|gb|EGY80346.1| DNA topoisomerase TopB [Peptoniphilus indolicus ATCC 29427]
Length = 568
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 31/204 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-KVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P D ++ V K+ + + I + L + + ++ D R
Sbjct: 50 DAYHEKYAKWNMADLPIIPKD-YKYEVAKS-TKKQFAILKKLMND-KEIDTIINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ + ++K+ R SS+ + I GNL + + L + AR
Sbjct: 107 EGESI-FRLV----YNEAKCKKKMKRLWISSMEDSAIRDGFGNLKDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKYG 200
D VG+ +R + ++ Y
Sbjct: 162 AIADWLVGMNISRLYSCLYKQNYS 185
>gi|240147294|ref|ZP_04745895.1| DNA topoisomerase III [Roseburia intestinalis L1-82]
gi|257200520|gb|EEU98804.1| DNA topoisomerase III [Roseburia intestinalis L1-82]
Length = 701
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A SIA V+ + RK DG ++ + YI V+ VGH+ L P
Sbjct: 3 LVIAEKPSVAQSIAGVIGANE---RK--------DG-YMEGNGYI-VSWCVGHLVELAQP 49
Query: 67 PAYQD-WNASNPLDLFQAPVH-----KAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
AY D W + L P K ++ + + + L EAR +V D REG
Sbjct: 50 DAYFDAWKKWSYESLPMIPEQWKHEVKKDTAAQYRVLKELMHEAR-VDSVVCATDAGREG 108
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA--RQE 178
E I V E G + + R SS+ E I + L + + L A RQ+
Sbjct: 109 ELIFRLVYEMAG-----CNKPMKRLWISSMEESAIREGFAELKPGSDYDHLYESALCRQQ 163
Query: 179 IDLKVGVAFTRFQTTYFQGK 198
D VG+ TR T + GK
Sbjct: 164 ADWLVGLNGTRLFTVLYGGK 183
>gi|403668042|ref|ZP_10933339.1| DNA topoisomerase III [Kurthia sp. JC8E]
Length = 728
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+ ++AEKPS+A IA VL K + +G G YI VT +GH+ L
Sbjct: 3 KIAVLAEKPSVARDIARVLKCNK-----------KGNGYLEGDR-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWN-ASNPL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P + Y+ W+ S P+ + + V K ++ + + +H+ + A ++ D
Sbjct: 50 DPESYDKKYKTWDLESLPMMPEKLKLTVIK-QTGKQFNAVKHVLERA-DVSSCIIGTDSG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR--NEALAVDA 175
REGE + ++E F ++ + R SSVT+K I + NL N+ N A A
Sbjct: 108 REGELVARWILEKIKF-----KKPIQRLWISSVTDKAIKEGFENLKPGNQYMNLYYAAVA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
R E D +G+ TR TT F + G + + +++V
Sbjct: 163 RSEADWYIGLNATRALTTRFNAQLNCGRVQTPVVAMV 199
>gi|424682573|ref|ZP_18119338.1| DNA topoisomerase [Enterococcus faecalis ERV129]
gi|402366789|gb|EJV01148.1| DNA topoisomerase [Enterococcus faecalis ERV129]
Length = 606
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 40 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 86
Query: 66 PPAYQD----WNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
P AY + WN S+ P+ ++ V KA + + +I + L + + ++ D R
Sbjct: 87 PDAYDEKYAKWNISDLPIIPKEYKFEVAKA-TKKQFNILKKLMND-KEIDTVINACDAGR 144
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 145 EGESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGEDYDKLFESAQAR 199
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + ++ Y
Sbjct: 200 AIADWLVGMNISRLYSCLYKQNY 222
>gi|334342323|ref|YP_004547303.1| DNA topoisomerase III [Desulfotomaculum ruminis DSM 2154]
gi|334093677|gb|AEG62017.1| DNA topoisomerase III [Desulfotomaculum ruminis DSM 2154]
Length = 731
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A +A VL+ GK + +G F G YI VT +GH+ L
Sbjct: 3 KTLVLAEKPSVARDLARVLNCGK-----------KGNGYFEGDQ-YI-VTWALGHLVTLA 49
Query: 65 FPPAY-QDWNASNPLDLFQAP------VHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P AY Q +++ DL P V K S + +N+ + +V+ D
Sbjct: 50 DPEAYDQKYHSWRLEDLPILPSYLKLVVIKQSSRQFYTVTAQMNR--KDVAEIVIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--A 175
REGE + +IE QV A + R SSVT+K I +L + E L A
Sbjct: 108 REGELVARWIIEKA--QVKKA---IKRLWISSVTDKAIRDGFRSLKKGQAYEHLYASAVA 162
Query: 176 RQEIDLKVGVAFTRFQT 192
R E D VG+ TR T
Sbjct: 163 RAEADWLVGINATRALT 179
>gi|303233186|ref|ZP_07319859.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
gi|302480771|gb|EFL43858.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
Length = 918
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 72 WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECT 131
W + L AP+ K S + I R L A+ +V+ D DREGE I + +
Sbjct: 111 WKLDSLPYLIWAPIEKLPS--EKGIIRALKNLAKKASSIVIATDFDREGELIGSDALHQM 168
Query: 132 GFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQ 191
D V RAR+S+ T+++I A +LV ++N A A ++RQ IDL G TR+
Sbjct: 169 QQVAPDI--PVFRARYSAFTKQEIDTAFSHLVTLDQNLADAGESRQYIDLVWGAVLTRYL 226
Query: 192 TTYFQGKYGNLDS 204
T GN+ S
Sbjct: 227 TMARFSGLGNVRS 239
>gi|377819461|ref|YP_004975832.1| DNA topoisomerase III [Burkholderia sp. YI23]
gi|357934296|gb|AET87855.1| DNA topoisomerase III [Burkholderia sp. YI23]
Length = 882
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA L G +T+ H+ + S Y+ ++S VGH+ +
Sbjct: 3 KALIIAEKPSVANDIARALGG---FTK------HD---EYFESDDYV-ISSAVGHLLEIA 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P Y W+ +N P P+ K+ES KV + R + + + L+ D
Sbjct: 50 APEEYDVKRGKWSFTNLPVIPPHFDLNPIAKSESRLKV-LTRLMKR--KDIDRLINACDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA- 175
REGE + F +I Q A++ V R S+T I + NL + LA A
Sbjct: 107 GREGE-LIFRLIA----QHAKAKQPVQRLWLQSMTPAAIREGFANLRSDADMQPLADAAR 161
Query: 176 -RQEIDLKVGVAFTRFQTTY 194
R E D VG+ TR T +
Sbjct: 162 CRSEADWLVGINGTRAMTAF 181
>gi|228906152|ref|ZP_04070041.1| DNA topoisomerase 3 [Bacillus thuringiensis IBL 200]
gi|228853561|gb|EEM98329.1| DNA topoisomerase 3 [Bacillus thuringiensis IBL 200]
Length = 729
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL T+K + FL YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIAKVLK----CTKKGNG--------FLEGDKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARG-CGHLVLWLDCD 117
P AY + + N DL P V ++ + + +H Q R +++ D
Sbjct: 50 DPEAYDNKYKTWNLEDLPMLPERMKLVVIKQTGKQFNAVKH--QLTRNDVNEVIVATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--A 175
REGE + +IE +VN + + R SSVT+K I NL E L A
Sbjct: 108 REGELVARWIIEKA--KVN---KPIKRLWISSVTDKAIKDGFNNLKPGKAYENLYASAVA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
R E D +G+ TR TT F + G + + ++++ S
Sbjct: 163 RSEADWYIGLNATRALTTKFNAQLNCGRVQTPTVAMIAS 201
>gi|303256333|ref|ZP_07342349.1| DNA topoisomerase III [Burkholderiales bacterium 1_1_47]
gi|330999028|ref|ZP_08322753.1| DNA topoisomerase [Parasutterella excrementihominis YIT 11859]
gi|302861062|gb|EFL84137.1| DNA topoisomerase III [Burkholderiales bacterium 1_1_47]
gi|329575770|gb|EGG57296.1| DNA topoisomerase [Parasutterella excrementihominis YIT 11859]
Length = 841
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA + G K G +YI V S VGH+ L
Sbjct: 3 KTLVIAEKPSVAGDIARAIGGLKKV------------GDHYEGDSYI-VASAVGHLLELK 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P Y+ W+ +N P AP+ K+E+ ++E ++ D
Sbjct: 50 EPAEYEVKRGKWSFANLPVIPSHFDLAPIKKSETKLNGLKKLLKSKE---VDKVINACDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE I ++E T ++ ++R S+T+ IL A +L + + L A
Sbjct: 107 GREGELIFRYIMEAT-----KNKKPIYRLWLQSMTKGAILDAFKHLRTDAQMQPLADAAK 161
Query: 175 ARQEIDLKVGVAFTRFQTTY 194
+R E D VG+ TR T +
Sbjct: 162 SRSEADWLVGINGTRAMTAF 181
>gi|218235662|ref|YP_002365211.1| DNA topoisomerase III [Bacillus cereus B4264]
gi|218163619|gb|ACK63611.1| DNA topoisomerase III [Bacillus cereus B4264]
Length = 729
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL T+K + FL YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIAKVLK----CTKKGNG--------FLEGDKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARG-CGHLVLWLDCD 117
P AY + + N DL P V ++ + + +H Q R +++ D
Sbjct: 50 DPEAYDNKYKTWNLEDLPMLPERMKLVVIKQTGKQFNAVKH--QLTRNDVNEVIVATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--A 175
REGE + +IE +VN + + R SSVT+K I NL E L A
Sbjct: 108 REGELVARWIIEKA--KVN---KPIKRLWISSVTDKAIKDGFNNLKPGKAYENLYASAVA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
R E D +G+ TR TT F + G + + ++++ S
Sbjct: 163 RSEADWYIGLNATRALTTKFNAQLNCGRVQTPTVAMIAS 201
>gi|419952643|ref|ZP_14468790.1| DNA topoisomerase III [Pseudomonas stutzeri TS44]
gi|387970688|gb|EIK54966.1| DNA topoisomerase III [Pseudomonas stutzeri TS44]
Length = 648
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 37/198 (18%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL + DG + G A + VT +GH+ P
Sbjct: 6 LFLCEKPSQAKDIAKVLGANR-----------RGDGCWQG--AGVSVTWCIGHLLETAPP 52
Query: 67 PAY----QDWNASNPLDLFQAPVH-KAESNPKVH-----ICRHLNQEARGCGHLVLWLDC 116
AY + WN + DL P K + PK + R L + C LV+ D
Sbjct: 53 DAYDARYKRWNLA---DLPIVPQQWKMQVKPKTASQFKAVKRLLGE----CAELVIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR--NEALAVD 174
DREGE I E++E + R + R S++ E I KA+G L N A
Sbjct: 106 DREGEMIARELVEHCRY-----RGPIQRLWLSALDEASIRKALGALKPGGETFNLYQAAL 160
Query: 175 ARQEIDLKVGVAFTRFQT 192
R D +G+ +R T
Sbjct: 161 GRSRADWLIGMNMSRLFT 178
>gi|303237776|ref|ZP_07324334.1| DNA topoisomerase [Prevotella disiens FB035-09AN]
gi|302482001|gb|EFL45038.1| DNA topoisomerase [Prevotella disiens FB035-09AN]
Length = 503
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 48/230 (20%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ + ++AEKPS+A IA ++ ++ DG GS Y+ VT +GH+ L
Sbjct: 1 MNICIIAEKPSVARDIARIVGA-----------TNKQDGYLEGS-GYL-VTWAMGHLITL 47
Query: 64 DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEA---------------RGC- 107
P AY ++A DL P NP + + R + ++ R C
Sbjct: 48 AMPEAY-GFSAYKAEDLPIRP------NPFLLVVRQVRKDKEYISDPAALKQLKVIRSCF 100
Query: 108 ---GHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVE 164
+++ D REGE + F I +Q R+ R SS+T+K I + + NL
Sbjct: 101 DKADRIIVATDAGREGE-LIFRYI----YQHLGCRKPFDRLWISSLTDKAIREGLSNLKP 155
Query: 165 PNRNEAL--AVDARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLV 210
N + L + +R E D VG+ +R +T +G Y G + + +++V
Sbjct: 156 GNNYDNLYYSAKSRSEADWLVGINASRALSTVREGGYSLGRVQTPTLAMV 205
>gi|329117910|ref|ZP_08246624.1| DNA topoisomerase TopB [Neisseria bacilliformis ATCC BAA-1200]
gi|327465991|gb|EGF12262.1| DNA topoisomerase TopB [Neisseria bacilliformis ATCC BAA-1200]
Length = 633
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 33/206 (16%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A I VL G L R DG F VT GH+ P
Sbjct: 3 LFLCEKPSQAKDIGKVL--GVLGGRN--------DGYF--RKGDTAVTWAFGHILS-QMP 49
Query: 67 PA-----YQDWNASNPLDL----FQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
PA Y D+ + L + +Q V K + + + + L EA +V+ D D
Sbjct: 50 PAAYGEQYADFGNTAALPVIPQTWQMEVSKGAAK-QFKVIQKLLAEA---DEVVIATDAD 105
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA--LAVDA 175
REGE I E+++ G+ R+KV R S + + KA+ N++ ++ E LA A
Sbjct: 106 REGEVIAREILDYCGY-----RKKVSRFWTSGLDTASVKKALANILPGSKTEGLYLAGLA 160
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D VG+ +R T + YG
Sbjct: 161 RGRADWLVGMNLSRAYTAAYAEGYGK 186
>gi|336437112|ref|ZP_08616821.1| hypothetical protein HMPREF0988_02406 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336006246|gb|EGN36282.1| hypothetical protein HMPREF0988_02406 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 701
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K + +AEKPS+A A L KL TR+ DG FL S I VT VGH+ +
Sbjct: 3 KSVYIAEKPSVAQEFAKAL---KLKTRRG-------DG-FLESEEAI-VTWCVGHLVTMS 50
Query: 65 FP----PAYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
+P PA + W+ + P + F+ V A + + LN+E + + D
Sbjct: 51 YPEEYDPALKRWSLNTLPFIPEEFKYEVIPAVAKQFRIVSDILNRE--DVERIYVCTDSG 108
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA-- 175
REGE I + ++E RR+V S TE++IL+ + + + + L+ A
Sbjct: 109 REGEYI-YRLVEQQAHVTGKERRRVW---IDSQTEEEILRGIREAKDLSEYDNLSASAYL 164
Query: 176 RQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFI 207
R + D +G+ F+R T KYGN S F+
Sbjct: 165 RAKEDYLMGINFSRLLTL----KYGNSISNFL 192
>gi|237801941|ref|ZP_04590402.1| DNA topoisomerase III, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024799|gb|EGI04855.1| DNA topoisomerase III [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 253
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G+ + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCIKGNG--VAVTWGIGHLLETAPP 49
Query: 67 PAY----QDWNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY ++W+ + L + A + K ++ + + + L +EA LV+ D DRE
Sbjct: 50 DAYGEHLKNWSL-DTLPILPAQWKVIVKPKTAGQFKVVKQLLKEAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R + R S++ E I +A+ ++ + + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALSSVKQGSETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 161 RADWLIGMNFSRLFT 175
>gi|409395834|ref|ZP_11246885.1| DNA topoisomerase III [Pseudomonas sp. Chol1]
gi|409119563|gb|EKM95941.1| DNA topoisomerase III [Pseudomonas sp. Chol1]
Length = 648
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 37/198 (18%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS A IA VL + DG + G A + VT +GH+ P
Sbjct: 6 LFLCEKPSQAKDIAKVLGANR-----------RGDGCWQG--AGVSVTWCIGHLLETAPP 52
Query: 67 PAY----QDWNASNPLDLFQAPVH-KAESNPKVH-----ICRHLNQEARGCGHLVLWLDC 116
AY + WN + DL P K + PK + R L + C LV+ D
Sbjct: 53 DAYDARYKRWNLA---DLPIVPQQWKMQVKPKTASQFKAVKRLLGE----CAELVIATDA 105
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR--NEALAVD 174
DREGE I E++E + R + R S++ E I KA+G L N A
Sbjct: 106 DREGEMIARELVEHCRY-----RGPIQRLWLSALDEASIRKALGALKPGGETFNLYQAAL 160
Query: 175 ARQEIDLKVGVAFTRFQT 192
R D +G+ +R T
Sbjct: 161 GRSRADWLIGMNMSRLFT 178
>gi|229829877|ref|ZP_04455946.1| hypothetical protein GCWU000342_01983 [Shuttleworthia satelles DSM
14600]
gi|229791175|gb|EEP27289.1| hypothetical protein GCWU000342_01983 [Shuttleworthia satelles DSM
14600]
Length = 568
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 31/203 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G + Y +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEG-NGY-RVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDR 118
AY + WN ++ P + ++ V KA + + +I + L + ++ D R
Sbjct: 50 DAYDEKYAKWNMADLPIIPRE-YKYEVAKA-TKKQFNILKKL-MNGKEIDMVINACDAGR 106
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDAR 176
EGE I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 107 EGEAI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQAR 161
Query: 177 QEIDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + +Q Y
Sbjct: 162 AIADWLVGMNISRLYSCLYQQNY 184
>gi|416014141|ref|ZP_11562039.1| DNA topoisomerase III [Pseudomonas syringae pv. glycinea str. B076]
gi|320326200|gb|EFW82255.1| DNA topoisomerase III [Pseudomonas syringae pv. glycinea str. B076]
Length = 673
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCLRGPG--VAVTWGIGHLLETAAP 49
Query: 67 PAYQD----WNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY D W+ L + A + K ++ + + + L +EA LV+ D DRE
Sbjct: 50 DAYGDHLKNWSLDT-LPILPAQWKVIVKPKTASQFKVVKQLLKEAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R + R S++ E I +A+ ++ + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALSSVKQGAETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 161 RADWLIGMNFSRLFT 175
>gi|289192085|ref|YP_003458026.1| DNA topoisomerase I [Methanocaldococcus sp. FS406-22]
gi|288938535|gb|ADC69290.1| DNA topoisomerase I [Methanocaldococcus sp. FS406-22]
Length = 973
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++ EKPS+A IA L K +K+ V ++ G I V S VGH+F L
Sbjct: 1 MTALIICEKPSVAKKIANALGKAK---KKSIDGVPYYELERNGKK--IIVASAVGHLFTL 55
Query: 64 DFPPAYQDWNASNPLDLFQAPVH----KAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
+++ + D+ P K N + + L++EA + D D E
Sbjct: 56 -VEKENKEFGSYPVFDIKWVPASVEKGKEYVNKYIKALKKLSKEA---DEFYIATDWDIE 111
Query: 120 GENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
GE I + ++ C G + K R RFSS+T+K+I+KA N E + A ++R
Sbjct: 112 GELIGYHALKYCCG------KEKAKRMRFSSLTKKEIVKAFENPDEIDYGLVDAGESRHI 165
Query: 179 IDLKVGVAFTR 189
+D G+ +R
Sbjct: 166 VDWYFGINLSR 176
>gi|210630404|ref|ZP_03296439.1| hypothetical protein COLSTE_00323 [Collinsella stercoris DSM 13279]
gi|210160486|gb|EEA91457.1| DNA topoisomerase [Collinsella stercoris DSM 13279]
Length = 863
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 7 LMVAEKPSIALSIATVLS-GGKLYTRKA-STEVHEF--DG-----MFLGSHAYIK----- 52
L+VAEK A IA +L+ GK K +T+V+ F DG M L H
Sbjct: 16 LVVAEKNIAAQKIAQLLADAGKPKNDKVYNTQVYRFTVDGEDWVSMGLAGHILAPDFPDE 75
Query: 53 ----------VTSVVGHVFRLDFP-----PAY--------------QDWNASNPLDLFQA 83
S G V D P P Y + W + L A
Sbjct: 76 ILFDKQNGWYSVSAEGEVLPADVPDGLARPPYDTKRKPFLANGISIKGWKVESLPYLTWA 135
Query: 84 PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVH 143
P+ K + + I R L A+ +++ D DREGE I + + +
Sbjct: 136 PIVKLPA--EKEIIRVLKNLAKKADEVIIATDFDREGELIGADALNMVREVAPEL--PAR 191
Query: 144 RARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLD 203
RAR+S++ + ++ +A NLVE +++ A A ++RQ IDL G TR+ T G +GN+
Sbjct: 192 RARYSALIKGEVTEAFNNLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNVR 251
Query: 204 S 204
S
Sbjct: 252 S 252
>gi|423084143|ref|ZP_17072648.1| DNA topoisomerase [Clostridium difficile 002-P50-2011]
gi|423086800|ref|ZP_17075191.1| DNA topoisomerase [Clostridium difficile 050-P50-2011]
gi|357543190|gb|EHJ25223.1| DNA topoisomerase [Clostridium difficile 002-P50-2011]
gi|357545909|gb|EHJ27872.1| DNA topoisomerase [Clostridium difficile 050-P50-2011]
Length = 742
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFVPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEDEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|296450172|ref|ZP_06891933.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296878553|ref|ZP_06902558.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
gi|296260935|gb|EFH07769.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296430360|gb|EFH16202.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
Length = 742
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFIPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEDEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|255307430|ref|ZP_05351601.1| putative DNA topoisomerase [Clostridium difficile ATCC 43255]
gi|423092430|ref|ZP_17080234.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
gi|357553932|gb|EHJ35668.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
Length = 742
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFVPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEDEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|255101561|ref|ZP_05330538.1| putative DNA topoisomerase [Clostridium difficile QCD-63q42]
Length = 742
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFVPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEDEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|126700019|ref|YP_001088916.1| DNA topoisomerase type IA [Clostridium difficile 630]
gi|115251456|emb|CAJ69289.1| DNA topoisomerase type IA [Clostridium difficile 630]
Length = 742
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL-DF 65
L++AEKPS+A +IA+ L G K TR+ DG F G+ YI +T VGH+ L D
Sbjct: 3 LVLAEKPSVAKTIASFL-GAK--TRQ--------DGYFEGND-YI-ITYAVGHLVSLYDM 49
Query: 66 PPAYQD-----WNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
+D W +N P D F+ + +++ + + LN+ + +++ D
Sbjct: 50 KDYDKDKYSGSWKMNNFPFVPEDKFKFKIDSSKTKQFNTVKKLLNR--KDVEYVINATDN 107
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPN--RNEALAVD 174
DREGE I F + F + ++ V R + T +DI + + NL + + RN A
Sbjct: 108 DREGELIAFLI-----FLLAKNKKPVKRILVNEWTPEDITRGIKNLKDEDEMRNLQAAGY 162
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKYGN 201
R D +G+ FT T KYGN
Sbjct: 163 TRLITDWLIGINFTSVATL----KYGN 185
>gi|449041662|gb|AGE82608.1| DNA topoisomerase III [Pseudomonas syringae pv. actinidiae]
Length = 673
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G+ + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCIKGNG--VVVTWGIGHLLETAPP 49
Query: 67 PAYQDWNASNPLDLFQAPVHKAE----SNPKV----HICRHLNQEARGCGHLVLWLDCDR 118
AY D + LD P+ AE PK I + L ++A LV+ D DR
Sbjct: 50 DAYGDHLKNWSLDTL--PILPAEWKVLVKPKTASQFKIVKQLLKQAT---ELVIATDADR 104
Query: 119 EGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--AR 176
EGE I E+IE G+ R + R S++ E I +A+ + + + L + AR
Sbjct: 105 EGEMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALAR 159
Query: 177 QEIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 160 SRADWLIGMNFSRLFT 175
>gi|451344595|ref|ZP_21913648.1| hypothetical protein HMPREF9943_01873 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449336679|gb|EMD15854.1| hypothetical protein HMPREF9943_01873 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 261
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 27/201 (13%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++AEKPS+A+SIA V+ K + DG + G+ +V+ VGH+ ++ P
Sbjct: 3 LVIAEKPSVAISIAKVIGANK-----------KKDGYYEGNG--YRVSWCVGHLIQMANP 49
Query: 67 PAYQD----WNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDREG 120
AY + WN ++ P+ A+S K +I + L + + ++ D REG
Sbjct: 50 DAYDEKYAKWNMADLPIVPKNYKYEIAKSTRKQFNILKKLMND-KEIDMVINACDAGREG 108
Query: 121 ENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQE 178
E+I F ++ QVN ++K+ R SS+ + I + NL + + L + AR
Sbjct: 109 ESI-FRLVYN---QVN-CKKKMKRLWISSMEDSAIKEGFDNLTDGKDYDNLFESAQARAI 163
Query: 179 IDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + +Q Y
Sbjct: 164 ADWLVGMNISRLYSCLYQQNY 184
>gi|338795812|emb|CBX20765.1| DNA topoisomerase IA [Streptococcus pyogenes]
Length = 604
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 40 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 86
Query: 66 PPAYQD----WNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
P AY + WN S+ P+ Q A++ K +I + L + + ++ D RE
Sbjct: 87 PDAYDEKYAKWNISDLPIIPKQYKFEVAKATKKQFNILKKLMND-KEIDTVINACDAGRE 145
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE+I F ++ + ++K+ R SS+ + I NL + L + AR
Sbjct: 146 GESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKGGFSNLKNGKDYDKLFESAQARA 200
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + ++ Y
Sbjct: 201 IADWLVGMNISRLYSCLYKQNY 222
>gi|290969264|ref|ZP_06560789.1| DNA topoisomerase [Megasphaera genomosp. type_1 str. 28L]
gi|290780770|gb|EFD93373.1| DNA topoisomerase [Megasphaera genomosp. type_1 str. 28L]
Length = 570
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKPS+A+SIA V+ K + DG + G + Y KV+ VGH+ ++
Sbjct: 4 ILVIAEKPSVAISIAKVIGATK-----------KKDGYYEG-NGY-KVSWCVGHLIQMAN 50
Query: 66 PPAYQ----DWNASN-PLDLFQAPVHKAESNPK-VHICRHLNQEARGCGHLVLWLDCDRE 119
P AY WN S+ P+ Q A++ K +I + L + + ++ D RE
Sbjct: 51 PDAYDGKYAKWNISDLPIIPKQYKFEVAKATKKQFNILKKLMND-KEIDTVINACDAGRE 109
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE+I F ++ + ++K+ R SS+ + I + NL + L + AR
Sbjct: 110 GESI-FRLV----YNEAKCKKKMQRLWISSMEDSAIKEGFSNLKNGEDYDKLFESAQARA 164
Query: 178 EIDLKVGVAFTRFQTTYFQGKY 199
D VG+ +R + ++ Y
Sbjct: 165 IADWLVGMNISRLYSCLYKQNY 186
>gi|319653386|ref|ZP_08007486.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
gi|317394870|gb|EFV75608.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
Length = 697
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA VL + ++ YI VT +GH+ L
Sbjct: 1 MKSLVLAEKPSVAREIARVLG------------CRQSHKSYMEGDKYI-VTWALGHLIEL 47
Query: 64 DFPP----AYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEA--RGCGHLVLWL 114
P Y++WN + P+ D V K S H + + A + +++
Sbjct: 48 KMPEHYDTKYKNWNLEDLPIIPDQMGLKVMKQTS----HQYKAIENLAKRKDIKEIIIAT 103
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D REGE + ++E + R+ + R SSVT++ I NL + E L
Sbjct: 104 DAGREGELVARWILEKIRW-----RKTIKRLWISSVTDRAIRDGFQNLKPGKQFEDLYES 158
Query: 175 A--RQEIDLKVGVAFTRFQTTYFQG--KYGNLDSRFISLVFSSLFLI 217
A R E D +G+ TR TT ++ G + + ++LV LI
Sbjct: 159 AVCRAEADWLIGLNVTRALTTKYKDPLSAGRVQTPTLALVMEREALI 205
>gi|398309529|ref|ZP_10513003.1| DNA topoisomerase III [Bacillus mojavensis RO-H-1]
Length = 727
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRNGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|399888120|ref|ZP_10773997.1| DNA topoisomerase III [Clostridium arbusti SL206]
Length = 729
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 29/203 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+L++AEKPS+ IA VL+ K + +G GS YI VT +GH+ L
Sbjct: 3 KILVLAEKPSVGRDIARVLNCSK-----------KGNGFIEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAPVHK-----AESNPKVHICR-HLNQEARGCGHLVLWLDCD 117
P AY + + A DL P H +S + ++ + +N+ + +V+ D
Sbjct: 50 DPEAYDERYKAWRIEDLPMMPDHLKLVVIKQSGRQFNVVKAQMNR--KDVEEIVIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--A 175
REGE + +IE R+ + R SSVT+K I L E L A
Sbjct: 108 REGELVARWIIEKA-----HVRKPLKRLWISSVTDKAIRDGFNKLKNAREYENLYASAVA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQGK 198
R E D VG+ TR T F +
Sbjct: 163 RSEADWFVGINATRALTCKFNAQ 185
>gi|423456008|ref|ZP_17432861.1| DNA topoisomerase 3 [Bacillus cereus BAG5X1-1]
gi|401133264|gb|EJQ40896.1| DNA topoisomerase 3 [Bacillus cereus BAG5X1-1]
Length = 198
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSIVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y++WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKNWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLIRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ Q + + R SSVT+K I NL +P + N
Sbjct: 102 IATDAGREGELVARWIIDKVKMQ-----KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>gi|452854457|ref|YP_007496140.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452078717|emb|CCP20468.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 738
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 13 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 59
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 60 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 113
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 114 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 168
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 169 SAVARAEADWIVGINATRALTTKFNAQ 195
>gi|82701530|ref|YP_411096.1| DNA topoisomerase III [Nitrosospira multiformis ATCC 25196]
gi|82409595|gb|ABB73704.1| DNA topoisomerase III [Nitrosospira multiformis ATCC 25196]
Length = 846
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA L G +T + + Y+ V+S VGH+ L
Sbjct: 3 KTLIIAEKPSVAADIARALGGFTKHTD------------YFENDEYV-VSSAVGHLLELA 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
PP ++ W+ +N P P+ K ES K+ + R + + + L+ D
Sbjct: 50 VPPEHEVKRGKWSFTNLPVIPPHFDLNPIEKTESRLKL-LTRLIKR--KDVDALINACDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA- 175
REGE I + G ++ V R S+T I + L++ LA A
Sbjct: 107 GREGELIFRYITRHVG-----TKKPVKRLWLQSMTPASIREGFNKLLDDEDVWPLAEAAV 161
Query: 176 -RQEIDLKVGVAFTRFQTTY 194
R E D VG+ TR T +
Sbjct: 162 SRSEADWLVGINGTRAMTAF 181
>gi|422609172|ref|ZP_16681126.1| DNA topoisomerase III, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330894799|gb|EGH27460.1| DNA topoisomerase III [Pseudomonas syringae pv. mori str. 301020]
Length = 172
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 31/192 (16%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCLRGPG--VAVTWGIGHLLETAAP 49
Query: 67 PAYQD----WNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY D W+ + L + A + K ++ + + + L +EA LV+ D DRE
Sbjct: 50 DAYGDHLKNWSL-DTLPILPAQWKVIVKPKTASQFKVVKQLLKEAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R + R S++ E I +A+ ++ + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPIQRLGLSALNEASIRQALNSVKQGAETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTR 189
D +G+ F+R
Sbjct: 161 RADWLIGMNFSR 172
>gi|237746964|ref|ZP_04577444.1| DNA topoisomerase III [Oxalobacter formigenes HOxBLS]
gi|229378315|gb|EEO28406.1| DNA topoisomerase III [Oxalobacter formigenes HOxBLS]
Length = 872
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K L++AEKPS+A IA L G +T++ G + S Y+ +TS VGH+ +
Sbjct: 3 KTLIIAEKPSVANDIAKSLGG---FTKQ---------GDYFESDQYV-LTSAVGHLLEIR 49
Query: 65 FPPAYQ----DWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P Y+ W+ +N P P+ K E P++ + L + + +V D
Sbjct: 50 APEEYEVKRGKWSFANLPVIPPSFALEPIAKTE--PRLKMLSRLIRR-KDITAIVNACDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA- 175
REGE + F +I Q A++ + R S+T I L + LA A
Sbjct: 107 GREGE-LIFRLIA----QYTKAKQPIKRLWLQSMTPAAIRDGFKRLRDDEEMLPLARAAR 161
Query: 176 -RQEIDLKVGVAFTRFQTTYFQGKYGNL 202
R E D +G+ TR T F K G
Sbjct: 162 SRSEADWLIGINGTRAMTA-FNSKEGGF 188
>gi|387896924|ref|YP_006327220.1| DNA topoisomerase III [Bacillus amyloliquefaciens Y2]
gi|387171034|gb|AFJ60495.1| DNA topoisomerase III [Bacillus amyloliquefaciens Y2]
Length = 738
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 13 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 59
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 60 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 113
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 114 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 168
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 169 SAVARAEADWIVGINATRALTTKFNAQ 195
>gi|403388889|ref|ZP_10930946.1| DNA topoisomerase III [Clostridium sp. JC122]
Length = 733
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 88/202 (43%), Gaps = 29/202 (14%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K+L++AEKPS+ +A VL K + K S ++ + YI VT +GH+ L
Sbjct: 3 KILVLAEKPSVGRDLARVL---KCNSNKRS---------YIEGNKYI-VTWALGHLVTLA 49
Query: 65 FPPAYQD----WNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
P +Y D WN N P+ + + V K S I + L + +V+ D
Sbjct: 50 SPESYDDKYKSWNMENLPMLPNKMKLEVIKKSSKQFYEIKKLLGRN--DIESVVIATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDA 175
REGE + +++ + R + R SS T+K IL NL E L A A
Sbjct: 108 REGELVARWILDKCHY-----RGSLSRLWISSQTDKAILDGFKNLKNGKEYENLYKAATA 162
Query: 176 RQEIDLKVGVAFTRFQTTYFQG 197
R E D VG+ TR T +
Sbjct: 163 RAEADWVVGLNVTRALTCRYNA 184
>gi|394994501|ref|ZP_10387215.1| DNA topoisomerase III [Bacillus sp. 916]
gi|393804601|gb|EJD66006.1| DNA topoisomerase III [Bacillus sp. 916]
Length = 728
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|385263542|ref|ZP_10041629.1| TopB [Bacillus sp. 5B6]
gi|385148038|gb|EIF11975.1| TopB [Bacillus sp. 5B6]
Length = 738
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 13 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 59
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 60 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 113
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 114 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRNGKEYENLYH 168
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 169 SAVARAEADWIVGINATRALTTKFNAQ 195
>gi|423363928|ref|ZP_17341423.1| DNA topoisomerase III [Bacillus cereus VD022]
gi|401073841|gb|EJP82252.1| DNA topoisomerase III [Bacillus cereus VD022]
Length = 717
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 53 VTSVVGHVFRLDFPPAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCG 108
+T +GH+ L P Y + WN + L + + SN KV + + +
Sbjct: 45 LTWAIGHLVTLYDPVDYDEKLKYWNLKD-LPIIPSEFKFKVSNNKVEQFNTIKKLMKDAS 103
Query: 109 HLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR- 167
+V+ D DREGENI + +I TG + + R +S+ EK++ K NL + N+
Sbjct: 104 DVVIATDADREGENIAYSIIRLTG----GGEKPLRRLWINSLVEKEVRKGFENLKDANQF 159
Query: 168 ----NEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+EA ARQ D VG+ TR + Q K
Sbjct: 160 VSYYHEA---QARQVSDWLVGLNGTRLYSGLLQKK 191
>gi|213971943|ref|ZP_03400042.1| DNA topoisomerase III [Pseudomonas syringae pv. tomato T1]
gi|302131388|ref|ZP_07257378.1| DNA topoisomerase III [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213923314|gb|EEB56910.1| DNA topoisomerase III [Pseudomonas syringae pv. tomato T1]
Length = 673
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCLRGPG--VAVTWGIGHLLETAAP 49
Query: 67 PAYQD----WNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY D W+ L + A + K ++ + + + L +EA LV+ D DRE
Sbjct: 50 DAYGDHLKNWSLDT-LPILPAQWKVIVKPKTASQFKVVKQLLKEAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R + R S++ E I +A+ + + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALSTVKQGAETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 161 RADWLIGMNFSRLFT 175
>gi|208701957|ref|YP_002267164.1| DNA topoisomerase 3 [Bacillus cereus H3081.97]
gi|208658249|gb|ACI30615.1| DNA topoisomerase 3 [Bacillus cereus H3081.97]
Length = 717
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 53 VTSVVGHVFRLDFPPAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCG 108
+T +GH+ L P Y + WN + L + + SN KV + + +
Sbjct: 45 LTWAIGHLVTLYDPVDYDEKLKYWNLKD-LPIIPSEFKFKVSNNKVEQFNTIKKLMKDAS 103
Query: 109 HLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR- 167
+V+ D DREGENI + +I TG + + R +S+ EK++ K NL + N+
Sbjct: 104 DVVIATDADREGENIAYSIIRLTG----GGEKPLRRLWINSLVEKEVRKGFENLKDANQF 159
Query: 168 ----NEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+EA ARQ D VG+ TR + Q K
Sbjct: 160 VSYYHEA---QARQVSDWLVGLNGTRLYSGLLQKK 191
>gi|421732932|ref|ZP_16172048.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451348221|ref|YP_007446852.1| DNA topoisomerase III [Bacillus amyloliquefaciens IT-45]
gi|407073293|gb|EKE46290.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449851979|gb|AGF28971.1| DNA topoisomerase III [Bacillus amyloliquefaciens IT-45]
Length = 728
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|386757024|ref|YP_006230240.1| protein TopB [Bacillus sp. JS]
gi|384930306|gb|AFI26984.1| TopB [Bacillus sp. JS]
Length = 727
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|384264016|ref|YP_005419723.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|380497369|emb|CCG48407.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
Length = 736
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 11 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 57
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 58 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 111
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 112 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 166
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 167 SAVARAEADWIVGINATRALTTKFNAQ 193
>gi|150398914|ref|YP_001322681.1| DNA topoisomerase I [Methanococcus vannielii SB]
gi|150011617|gb|ABR54069.1| DNA topoisomerase I [Methanococcus vannielii SB]
Length = 817
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L++ EKP++A IA L K +K+ V ++ G I V S VGH++ L
Sbjct: 4 LIICEKPNVAKKIAEALGKPK---KKSHNSVPYYELERNGED--IIVASAVGHLYTLQEK 58
Query: 64 ------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
D+P +W ++ LD K + + +++EA + D D
Sbjct: 59 EKTKFGDYPVYDIEWVPASTLD------DKKYIQKYIDTLKKVSKEA---SKFYVATDFD 109
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDA-- 175
EGE I + + Q N HR RFSS+T+K+I+K+ N PN+ + VDA
Sbjct: 110 IEGELIGYHALSHACGQKN-----AHRLRFSSLTKKEIIKSFEN---PNQIDFGLVDAGD 161
Query: 176 -RQEIDLKVGVAFTR 189
R +ID G+ +R
Sbjct: 162 SRHKIDWYFGINVSR 176
>gi|170717997|ref|YP_001785040.1| DNA topoisomerase III [Haemophilus somnus 2336]
gi|378773985|ref|YP_005176228.1| DNA topoisomerase III [Pasteurella multocida 36950]
gi|168826126|gb|ACA31497.1| DNA topoisomerase III [Haemophilus somnus 2336]
gi|356596533|gb|AET15259.1| DNA topoisomerase III [Pasteurella multocida 36950]
Length = 683
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL--- 63
L + EKPS A +A VL + +G+ + I VT GH+
Sbjct: 3 LFICEKPSQARDLAGVLGA-----------TSKGEGLLATADKSIIVTWGFGHLVEQYQP 51
Query: 64 -DFPPAYQDWNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
D+ A++ W A L + A K ES + + L ++A +V+ D DRE
Sbjct: 52 EDYDEAWKRW-AFETLPIIPAQWKMTPKKESKKQYSVVIGLIKKAT---SVVIATDADRE 107
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVDARQ 177
GE I E+++ G+ R ++ R S++ + I KA+ L EAL A R
Sbjct: 108 GEMIARELLDLAGY-----RGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRS 162
Query: 178 EIDLKVGVAFTRFQTTYFQGK 198
D +G+ F+R T Q K
Sbjct: 163 RSDWLIGMNFSRLFTLMAQAK 183
>gi|353328548|ref|ZP_08970875.1| DNA topoisomerase I [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 816
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ E P+ A +I LS EF KV + GHV D P
Sbjct: 3 LLIVESPAKAKTIGKYLS-------------KEF-----------KVAASFGHV--RDLP 36
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+ N + + KAE + L +EA + L D DREGE I +
Sbjct: 37 AKNGSVDPDNDFAMKYEIIEKAE-----KYVKELVKEASKTSDIYLATDPDREGEAIAWN 91
Query: 127 VIECTGFQ--VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
VIE + +ND +HR F+ +T++ + +A+ N E N + A AR+ +D VG
Sbjct: 92 VIEALKERKAIND-ESNIHRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVG 150
Query: 185 VAFTRFQTTYFQG 197
+ + T G
Sbjct: 151 FSLSPLLWTKLSG 163
>gi|339633995|ref|YP_004725636.1| topoisomerase IA [Weissella koreensis KACC 15510]
gi|420161339|ref|ZP_14668104.1| topoisomerase IA [Weissella koreensis KCTC 3621]
gi|420161476|ref|ZP_14668240.1| topoisomerase IA [Weissella koreensis KCTC 3621]
gi|338853791|gb|AEJ22957.1| topoisomerase IA [Weissella koreensis KACC 15510]
gi|394745014|gb|EJF33910.1| topoisomerase IA [Weissella koreensis KCTC 3621]
gi|394745316|gb|EJF34200.1| topoisomerase IA [Weissella koreensis KCTC 3621]
Length = 730
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHE--FDGMFLGSHAYIKVTSVVGHVF 61
++ +++AEKP+ A++ + K R+ EV FDG YI T GH+
Sbjct: 1 MRTIILAEKPTQAVAYSKAFKSSK--KREGYIEVSNEYFDG-----ETYI--TYGFGHLV 51
Query: 62 RLDFPP----AYQDWNASN-PL--DLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
L P Y++W+ +N P+ D F+ K ++ + I ++L EA +++
Sbjct: 52 ELYLPEQYDEKYKNWSINNLPIIPDQFKFKTGKGKAE-QFKIVKNLLSEA---DQIIIAT 107
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D DREGENI + +I +G +N + + R +S+ I + NL E ++ + ++
Sbjct: 108 DADREGENIAWSIINQSG--INPQEKIMKRLWINSLESSAIRDGLTNLHEAKQHYSAYIE 165
Query: 175 AR 176
A+
Sbjct: 166 AQ 167
>gi|418635969|ref|ZP_13198327.1| DNA topoisomerase III [Staphylococcus lugdunensis VCU139]
gi|374841454|gb|EHS04927.1| DNA topoisomerase III [Staphylococcus lugdunensis VCU139]
Length = 716
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L H+ +G ++ + YI VT +GH+
Sbjct: 6 MKSLILAEKPSVARDIADALH-----------ITHKKNG-YIENEKYI-VTWALGHLVTN 52
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P YQ WN ++ P + + K K LN++ ++++ D
Sbjct: 53 AQPEHYDKRYQTWNLNDLPIIPKHMKTIVIGKTSKQFKTVKSLLLNKQV---NNVIIATD 109
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 110 AGREGELVARLILDKVG-----NKKPIQRLWISSVTKKAIQQGFKNLQDGRKYNHLYQAA 164
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVF 211
AR E D VG+ TR TT + Q G + + I LV+
Sbjct: 165 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVY 204
>gi|385783714|ref|YP_005759887.1| putative DNA topoisomerase [Staphylococcus lugdunensis N920143]
gi|418415034|ref|ZP_12988241.1| DNA topoisomerase 3 [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339893970|emb|CCB53217.1| putative DNA topoisomerase [Staphylococcus lugdunensis N920143]
gi|410875807|gb|EKS23722.1| DNA topoisomerase 3 [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 711
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L H+ +G ++ + YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADALH-----------ITHKKNG-YIENEKYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P YQ WN ++ P + + K K LN++ ++++ D
Sbjct: 48 AQPEHYDKRYQTWNLNDLPIIPKHMKTIVIGKTSKQFKTVKSLLLNKQV---NNVIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIQRLWISSVTKKAIQQGFKNLQDGRKYNHLYQAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVF 211
AR E D VG+ TR TT + Q G + + I LV+
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVY 199
>gi|315659231|ref|ZP_07912095.1| DNA topoisomerase TopB [Staphylococcus lugdunensis M23590]
gi|315495656|gb|EFU83987.1| DNA topoisomerase TopB [Staphylococcus lugdunensis M23590]
Length = 716
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L H+ +G ++ + YI VT +GH+
Sbjct: 6 MKSLILAEKPSVARDIADALH-----------ITHKKNG-YIENEKYI-VTWALGHLVTN 52
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P YQ WN ++ P + + K K LN++ ++++ D
Sbjct: 53 AQPEHYDKRYQTWNLNDLPIIPKHMKTIVIGKTSKQFKTVKSLLLNKQV---NNVIIATD 109
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 110 AGREGELVARLILDKVG-----NKKPIQRLWISSVTKKAIQQGFKNLQDGRKYNHLYQAA 164
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVF 211
AR E D VG+ TR TT + Q G + + I LV+
Sbjct: 165 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVY 204
>gi|289550139|ref|YP_003471043.1| DNA topoisomerase III [Staphylococcus lugdunensis HKU09-01]
gi|289179671|gb|ADC86916.1| DNA topoisomerase III [Staphylococcus lugdunensis HKU09-01]
Length = 716
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L H+ +G ++ + YI VT +GH+
Sbjct: 6 MKSLILAEKPSVARDIADALH-----------ITHKKNG-YIENEKYI-VTWALGHLVTN 52
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P YQ WN ++ P + + K K LN++ ++++ D
Sbjct: 53 AQPEHYDKRYQTWNLNDLPIIPKHMKTIVIGKTSKQFKTVKSLLLNKQV---NNVIIATD 109
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 110 AGREGELVARLILDKVG-----NKKPIQRLWISSVTKKAIQQGFKNLQDGRKYNHLYQAA 164
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVF 211
AR E D VG+ TR TT + Q G + + I LV+
Sbjct: 165 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVY 204
>gi|428277877|ref|YP_005559612.1| DNA topoisomerase III [Bacillus subtilis subsp. natto BEST195]
gi|291482834|dbj|BAI83909.1| DNA topoisomerase III [Bacillus subtilis subsp. natto BEST195]
Length = 727
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|190571637|ref|YP_001975995.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019040|ref|ZP_03334847.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357909|emb|CAQ55370.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995149|gb|EEB55790.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 816
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ E P+ A +I LS EF KV + GHV D P
Sbjct: 3 LLIVESPAKAKTIGKYLS-------------KEF-----------KVAASFGHV--RDLP 36
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+ N + + KAE + L +EA + L D DREGE I +
Sbjct: 37 AKNGSVDPDNDFAMKYEIIEKAE-----KYVKELVKEASKTSDIYLATDPDREGEAIAWN 91
Query: 127 VIECTGFQ--VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
VIE + +ND +HR F+ +T++ + +A+ N E N + A AR+ +D VG
Sbjct: 92 VIEALKERKAIND-ESNIHRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVG 150
Query: 185 VAFTRFQTTYFQG 197
+ + T G
Sbjct: 151 FSLSPLLWTKLSG 163
>gi|16077493|ref|NP_388307.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. 168]
gi|221308245|ref|ZP_03590092.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. 168]
gi|221312567|ref|ZP_03594372.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221321767|ref|ZP_03603061.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. SMY]
gi|402774671|ref|YP_006628615.1| DNA topoisomerase III [Bacillus subtilis QB928]
gi|452916519|ref|ZP_21965142.1| DNA topoisomerase III family protein [Bacillus subtilis MB73/2]
gi|81345907|sp|P96583.1|TOP3_BACSU RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|1881236|dbj|BAA19263.1| PROBABLE DNA TOPOISOMERASE III [Bacillus subtilis]
gi|2632726|emb|CAB12233.1| DNA topoisomerase III [Bacillus subtilis subsp. subtilis str. 168]
gi|402479856|gb|AFQ56365.1| DNA topoisomerase III [Bacillus subtilis QB928]
gi|407956121|dbj|BAM49361.1| DNA topoisomerase III [Bacillus subtilis BEST7613]
gi|407963392|dbj|BAM56631.1| DNA topoisomerase III [Bacillus subtilis BEST7003]
gi|452114659|gb|EME05058.1| DNA topoisomerase III family protein [Bacillus subtilis MB73/2]
Length = 727
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|373449965|ref|ZP_09542052.1| DNA topoisomerase 1 [Wolbachia pipientis wAlbB]
gi|371932830|emb|CCE77039.1| DNA topoisomerase 1 [Wolbachia pipientis wAlbB]
Length = 816
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ E P+ A +I LS EF KV + GHV D P
Sbjct: 3 LLIVESPAKAKTIGKYLS-------------KEF-----------KVAASFGHV--RDLP 36
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+ N + + KAE + L +EA + L D DREGE I +
Sbjct: 37 AKNGSVDPDNDFAMKYEIIEKAE-----KYVKELVKEASKTSDIYLATDPDREGEAIAWN 91
Query: 127 VIECTGFQ--VNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
VIE + +ND +HR F+ +T++ + +A+ N E N + A AR+ +D VG
Sbjct: 92 VIEALKERKAIND-ESNIHRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVG 150
Query: 185 VAFTRFQTTYFQG 197
+ + T G
Sbjct: 151 FSLSPLLWTKLSG 163
>gi|418413224|ref|ZP_12986467.1| DNA topoisomerase 3 [Staphylococcus epidermidis BVS058A4]
gi|410879312|gb|EKS27162.1| DNA topoisomerase 3 [Staphylococcus epidermidis BVS058A4]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|420191147|ref|ZP_14697082.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM037]
gi|420205092|ref|ZP_14710627.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM015]
gi|394257956|gb|EJE02855.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM037]
gi|394271172|gb|EJE15670.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM015]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|420185841|ref|ZP_14691918.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM040]
gi|394253195|gb|EJD98208.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM040]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|418634454|ref|ZP_13196848.1| DNA topoisomerase III [Staphylococcus epidermidis VCU129]
gi|374836984|gb|EHS00557.1| DNA topoisomerase III [Staphylococcus epidermidis VCU129]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|375361074|ref|YP_005129113.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|371567068|emb|CCF03918.1| DNA topoisomerase III [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
Length = 736
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 11 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 57
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 58 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLVR------KDVSQIVIA 111
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 112 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 166
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 167 SAVARAEADWIVGINATRALTTKFNAQ 193
>gi|418328988|ref|ZP_12940078.1| DNA topoisomerase III [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614964|ref|ZP_13177920.1| DNA topoisomerase III [Staphylococcus epidermidis VCU118]
gi|365231314|gb|EHM72366.1| DNA topoisomerase III [Staphylococcus epidermidis 14.1.R1.SE]
gi|374818719|gb|EHR82866.1| DNA topoisomerase III [Staphylococcus epidermidis VCU118]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|416125884|ref|ZP_11596231.1| DNA topoisomerase III family protein [Staphylococcus epidermidis
FRI909]
gi|420199219|ref|ZP_14704899.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM031]
gi|319400627|gb|EFV88852.1| DNA topoisomerase III family protein [Staphylococcus epidermidis
FRI909]
gi|394272375|gb|EJE16837.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM031]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|296332791|ref|ZP_06875251.1| DNA topoisomerase III [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673136|ref|YP_003864808.1| DNA topoisomerase III [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296150071|gb|EFG90960.1| DNA topoisomerase III [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411380|gb|ADM36499.1| DNA topoisomerase III [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 728
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>gi|242243943|ref|ZP_04798386.1| DNA topoisomerase III [Staphylococcus epidermidis W23144]
gi|418631120|ref|ZP_13193590.1| DNA topoisomerase III [Staphylococcus epidermidis VCU128]
gi|420175825|ref|ZP_14682255.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM061]
gi|420191512|ref|ZP_14697428.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM023]
gi|242232576|gb|EES34888.1| DNA topoisomerase III [Staphylococcus epidermidis W23144]
gi|374835888|gb|EHR99484.1| DNA topoisomerase III [Staphylococcus epidermidis VCU128]
gi|394242512|gb|EJD87903.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM061]
gi|394266545|gb|EJE11177.1| DNA topoisomerase III [Staphylococcus epidermidis NIHLM023]
Length = 711
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P P+Y++WN + P + + K KV L++ + +++ D
Sbjct: 48 ATPEQYNPSYKEWNLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVK---EIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I LV S
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVKS 200
>gi|423473375|ref|ZP_17450117.1| DNA topoisomerase 3 [Bacillus cereus BAG6O-2]
gi|402426148|gb|EJV58286.1| DNA topoisomerase 3 [Bacillus cereus BAG6O-2]
Length = 729
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 43/226 (19%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 2 VKSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTL 48
Query: 64 DFPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHL 110
P + Y++WN DL P K+ + + ++ + +
Sbjct: 49 ADPESYDVKYKNWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEI 100
Query: 111 VLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEA 170
++ D REGE + +I+ Q + + R SSVT+K I NL E
Sbjct: 101 IIATDAGREGELVARWIIDKVKMQ-----KPIKRLWISSVTDKAIKDGFANLKPGKAYEN 155
Query: 171 LAVD--ARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
L AR E D +G+ TR TT F + G + + ++++ S
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQLNCGRVQTPTVAMIAS 201
>gi|229042282|ref|ZP_04190034.1| DNA topoisomerase 3 [Bacillus cereus AH676]
gi|228727073|gb|EEL78278.1| DNA topoisomerase 3 [Bacillus cereus AH676]
Length = 729
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G F G YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIAKVLKCTK-----------KGNGFFEGDK-YI-VTWALGHLVTLA 49
Query: 65 FPPAYQD-WNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARG-CGHLVLWLDCD 117
P AY + + N DL P V ++ + ++ + NQ R ++ D
Sbjct: 50 DPEAYDNKYKTWNLEDLPMLPERMKLVVIKQTGKQFNVVK--NQLTRSDVNEAIVATDAG 107
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---NEALAVD 174
REGE + +IE +VN + + R SSVT+K I NL +P + N +
Sbjct: 108 REGELVARWIIEKA--KVN---KPIKRLWISSVTDKAIKDGFNNL-KPGKAYDNLYASAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
AR E D +G+ TR TT F + G + + ++++ S
Sbjct: 162 ARSEADWYIGLNATRALTTKFNAQLNCGRVQTPTVAIIAS 201
>gi|422407903|ref|ZP_16484866.1| DNA topoisomerase III, partial [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330885773|gb|EGH19922.1| DNA topoisomerase III [Pseudomonas syringae pv. glycinea str. race
4]
Length = 601
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L + EKPS IA VL G K TR DG G + VT +GH+ P
Sbjct: 3 LYLCEKPSQGKDIAAVL-GAK--TRG--------DGCLRGPG--VAVTWGIGHLLETAAP 49
Query: 67 PAYQD----WNASNPLDLFQAP---VHKAESNPKVHICRHLNQEARGCGHLVLWLDCDRE 119
AY D W+ L + A + K ++ + + + L +EA LV+ D DRE
Sbjct: 50 DAYGDHLKNWSLDT-LPILPAQWKVIVKPKTASQFKVVKQLLKEAT---ELVIATDADRE 105
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
GE I E+IE G+ R + R S++ E I +A+ ++ + L + AR
Sbjct: 106 GEMIARELIEYCGY-----RGPIQRLWLSALNEASIRQALNSVKQGAETYPLYLSALARS 160
Query: 178 EIDLKVGVAFTRFQT 192
D +G+ F+R T
Sbjct: 161 RADWLIGMNFSRLFT 175
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,315,225,494
Number of Sequences: 23463169
Number of extensions: 131447120
Number of successful extensions: 355241
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 3267
Number of HSP's that attempted gapping in prelim test: 352328
Number of HSP's gapped (non-prelim): 4176
length of query: 220
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 83
effective length of database: 9,144,741,214
effective search space: 759013520762
effective search space used: 759013520762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)