BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048704
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G L + K + VHE+ G F G K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 230 bits (587), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKA---STEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
VLMVAEKPS+A SIA +LS G + + K + VH++ G F G + K+TSV GHV
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMT 63
Query: 63 LDFPPAYQDWNASNPLDLF-QAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P +LF QAP K E+NPK+++ + L E RGC ++VLWLDCD+EGE
Sbjct: 64 LDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVNDA---RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
NICFEV++ +N+A + V RARFSS+T+ DI AM L EP+ NEAL+VDARQE
Sbjct: 124 NICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQE 183
Query: 179 IDLKVGVAFTRFQTTYFQGKYGNLDSRFISL 209
+DL++G AFTRFQT YFQGKYG+LDS IS
Sbjct: 184 LDLRIGCAFTRFQTKYFQGKYGDLDSSLISF 214
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKAS---TEVHEFDGMFLGSHA-YIKVTSVVGHVF 61
VLMVAEKPS+A S+A +LS G+ ++ + HE+ G F + + ++TSV GHV
Sbjct: 4 VLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVM 63
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
LDF Y W+ +P+ LF K E+NPK ++ + L EARGC +LVLWLDCD+EGE
Sbjct: 64 SLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGE 123
Query: 122 NICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
NICFEV++ +N+ + + +RA FS++TEKDI KAM L PN NEA +VDARQE+
Sbjct: 124 NICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQEL 183
Query: 180 DLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
DL++G AFTRFQT +FQ +YG+LDS IS
Sbjct: 184 DLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ R+ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K V I + L +E R C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
KVL VAEK A IA +LS G++ ++ ++ ++EFD G + + +TSV GH+
Sbjct: 35 KVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
DF ++ W + NPL LF+A + K + I + L +E C LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 122 NICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEID 180
NI FE+I C + N +V RARFS +T + A NL EP++ + AVD RQE+D
Sbjct: 155 NIGFEIIHVCKAVKPN---LRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELD 211
Query: 181 LKVGVAFTRFQTTYFQ 196
L++G AFTRFQT Q
Sbjct: 212 LRIGAAFTRFQTLRLQ 227
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAST---EVHEFDGMFLGSHAYIKVTSVVGHV 60
+K L VAEK A +IA +LS G R+ + +V +F+ G +A + +TSV GH+
Sbjct: 26 MKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHM 85
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+L F +Y++W +P LF APV K + I R L +E RGC L++W DCDREG
Sbjct: 86 MQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREG 145
Query: 121 ENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEI 179
ENI +E+I+ C + N + V+RA FS +T + +A+ L +P++ ++ AVD R E+
Sbjct: 146 ENIGYEIIDVCRAIKPNIS---VYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTEL 202
Query: 180 DLKVGVAFTRFQTTYFQ 196
DL+ G A TRFQT Q
Sbjct: 203 DLRTGAAITRFQTMRLQ 219
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 10/198 (5%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVH---EFDGMFLG-SHAYIKVTSVVGHV 60
++L VAEKPS A IA +LS + R+ ++ + +F L + + TSV GH+
Sbjct: 4 RILNVAEKPSAAKEIAAILSNKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 61 FRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREG 120
+D ++ W + +P+ LF AP+ K + K + + L +E + L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 121 ENICFEVIECTGFQVNDARRK--VHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQE 178
ENI FEV+E +A++K +RA FS++ ++I +A NL +PN +++AVD R E
Sbjct: 124 ENIAFEVLEV----CKNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRME 179
Query: 179 IDLKVGVAFTRFQTTYFQ 196
IDL++G AFTRFQT Y +
Sbjct: 180 IDLRIGAAFTRFQTLYLK 197
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTE---VHEFDGMFLGSHAYIKVTSVVGHVF 61
+ L VAEK +A +A +LS G R+ ++ ++ + G I VTSV GH+
Sbjct: 3 RALFVAEKNDVAKGVAAILSNGTANRREGRSKFNKIYTLNTELFGQQTAISVTSVSGHMM 62
Query: 62 RLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGE 121
F +W ++ ++LF+APV + I + L ++A+ LV+W DCDREGE
Sbjct: 63 NFQFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGE 122
Query: 122 NICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDL 181
I E+++ + ++ R + RARFS +T+ I +A NL+ + AVD R E+DL
Sbjct: 123 AIGAEIVKVC--RDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDL 180
Query: 182 KVGVAFTRFQTTYFQGKYGNL 202
++G AFTR QT + + ++ +L
Sbjct: 181 RIGSAFTRLQTLHLRNRFRDL 201
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top3 PE=1 SV=2
Length = 622
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLY---TRKASTEVHEFDGMFLGS--HAYIKVTSVVG 58
++VL VAEK SIA S+A++L GG + TR + ++F F G+ + + +TSV G
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGHVRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVSG 60
Query: 59 HVFRLDFPPAYQDWNASNPLD-LFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCD 117
H+ FP Y W +S P D LF A + + S + ++ +EAR +L +W DCD
Sbjct: 61 HLTEASFPSEYSSW-SSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCD 119
Query: 118 REGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQ 177
REGE+I E+ + ++ +V RA F+++ I+ A + ++N A AVDAR
Sbjct: 120 REGEHIGVEISNVA--RASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARI 177
Query: 178 EIDLKVGVAFTRFQTTYFQGKYGNLDSRFIS 208
E+D ++G FTR QT Q + L ++ IS
Sbjct: 178 ELDFRLGAIFTRLQTIQLQKSFDILQNKIIS 208
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 23/214 (10%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLG-------SHAYIKVTS 55
+KVL VAEK SIA +++ +L GG+ +R + V +D MF G ++ + +TS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTSRDSGYMYVKNYDFMFSGFPFARNGANCEVTMTS 60
Query: 56 VVGHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
V GH+ +DF W +LF AP+++ +N + I ++ +EAR +L++W D
Sbjct: 61 VAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWTD 120
Query: 116 CDREGENICFEVIECTGFQVNDARR--------KVHRARFSSVTEKDILKAMGNLVEPNR 167
CDREGE I +E+ + +A+R +V+RA FS + + IL A N +
Sbjct: 121 CDREGEYIGWEIWQ-------EAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDM 173
Query: 168 NEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGN 201
AV R EIDL+ GV FTR T + K N
Sbjct: 174 KSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLRN 207
>sp|Q9HM08|TOP1_THEAC DNA topoisomerase 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=topA
PE=3 SV=1
Length = 770
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 17/204 (8%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKAS-TEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+++AEK IA LSGG++ + +A T EF+ + GS Y+ + GH+ DF
Sbjct: 6 IIIAEKADAGRRIAYFLSGGQVKSHRAKGTSYLEFE--YNGSKTYL--IPLSGHIVEADF 61
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARG-CGHLVLWLDCDREGENIC 124
Y DWN + DL A + K N K + Q RG +V+ D DREGE I
Sbjct: 62 ESGYSDWNKIDLSDLIDARIVK---NIKNKVAYQTLQAFRGKVEEIVIATDYDREGELIG 118
Query: 125 FEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
E ++ + + + ++ RA+FS++T+ +IL + NL+ N + A A DAR+ IDL G
Sbjct: 119 VEALDI----IKEGKEEIRRAKFSALTKNEILDSFKNLIGVNYSLADAADARESIDLIWG 174
Query: 185 VAFTRFQTTYFQGKYGNLDSRFIS 208
TRF F G L F+S
Sbjct: 175 SVLTRF----FSVTTGRLGKSFLS 194
>sp|O28469|TOP1_ARCFU DNA topoisomerase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=topA PE=3
SV=1
Length = 663
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 11/195 (5%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L++ EK + A IA++L +K + + AY V + GH+ LDFP
Sbjct: 6 LIITEKDNTARRIASILFKDVKTLKKGRVSYYHSPS----NDAY--VVGLKGHIVELDFP 59
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFE 126
+W + L QA + K + I L + A+ + + D DREGE I E
Sbjct: 60 KELNNWTKTPLEKLLQAELVKKVK--ERTISSILKEIAKKADRVTVATDYDREGELIGVE 117
Query: 127 VIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVA 186
+E VN KV R R+S+VTEK+I A V+ + N A A ARQ+IDL G
Sbjct: 118 ALEIVK-SVNPTV-KVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALARQKIDLIWGAT 175
Query: 187 FTRFQTTYFQGKYGN 201
TR + + G+ G
Sbjct: 176 LTRLISVH-SGRMGK 189
>sp|Q9UYS8|TOP1_PYRAB DNA topoisomerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=topA PE=3 SV=1
Length = 685
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKP++A IA LS + RK V ++ +F I V S VGH++ L
Sbjct: 2 ILVIAEKPNVARKIAGALS-ERRPIRKTIFGVPYYE-VFRDGKKLI-VASAVGHLYGL-- 56
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESN---PKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
QD+ D+ PV+ AE N K +I + L+ A+ ++ D D EGE
Sbjct: 57 -APKQDFFGYPIFDIEWVPVYIAEKNKDYAKDYI-KALSVLAKRVKEFIVACDYDTEGEV 114
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEID 180
I + ++ V+ +R K R +FS++T++D+L A NL EP N +A AR +D
Sbjct: 115 IGYTALK-YACGVDPSRAK--RMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARHVLD 170
Query: 181 LKVGVAFTRFQT 192
GV +R T
Sbjct: 171 WYWGVNLSRALT 182
>sp|P96583|TOP3_BACSU DNA topoisomerase 3 OS=Bacillus subtilis (strain 168) GN=topB PE=3
SV=1
Length = 727
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 37/207 (17%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDQYI-VTWALGHLVTLA 49
Query: 65 FPPAY----QDWNASN------PLDLFQAPVHKAESNP-KVHICRHLNQEARGCGHLVLW 113
P Y Q W + PL L + N K + R + +V+
Sbjct: 50 DPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTR------KDVNQIVIA 103
Query: 114 LDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL-- 171
D REGE + +IE + R+ + R SSVT+K I + L E L
Sbjct: 104 TDAGREGELVARWIIEKA-----NVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYH 158
Query: 172 AVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D VG+ TR TT F +
Sbjct: 159 SAVARAEADWIVGINATRALTTKFNAQ 185
>sp|Q59046|TOP1_METJA DNA topoisomerase 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=topA PE=3 SV=1
Length = 761
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+ L++ EKPS+A IA L K +K+ V ++ G I V S VGH+F L
Sbjct: 5 MTALIICEKPSVAKKIANALGKAK---KKSIDGVPYYELERDGKK--IIVASAVGHLFTL 59
Query: 64 --------DFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
F P + + A V K + +I + L + ++ + D
Sbjct: 60 VEKENKEFGFYPVFD-------IKWVPASVDKGKEYVNKYI-KALKKLSKDADEFYIATD 111
Query: 116 CDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD 174
D EGE I + ++ C G R K R RFSS+T+K+I++A N E + A +
Sbjct: 112 WDIEGELIGYHALKYCCG------REKAKRMRFSSLTKKEIVRAFENPDEIDYGLVDAGE 165
Query: 175 ARQEIDLKVGVAFTR 189
+R +D G+ +R
Sbjct: 166 SRHILDWYFGINLSR 180
>sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topB PE=3 SV=1
Length = 711
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 35/222 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARGCGHLVLWL 114
P P+Y++WN DL P V +++N + I + L + + +++
Sbjct: 48 ATPEQYNPSYKEWNLE---DLPIIPKKMKTVVISKTNRQFKIVKSLILD-KNVKEIIIAT 103
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--A 172
D REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 104 DAGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEA 158
Query: 173 VDARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I +V S
Sbjct: 159 ALARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQIVKS 200
>sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topB PE=3 SV=1
Length = 711
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 35/222 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+ IA L+ + + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVGRDIANALN------------LQQKSNGYIEGKQYI-VTWALGHLVTN 47
Query: 64 DFP----PAYQDWNASNPLDLFQAP-----VHKAESNPKVHICRHLNQEARGCGHLVLWL 114
P P+Y++WN DL P V +++N + I + L + + +++
Sbjct: 48 ATPEQYNPSYKEWNLE---DLPIIPKKMKTVVISKTNRQFKIVKSLILD-KNVKEIIIAT 103
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--A 172
D REGE + +++ G ++ + R SSVT+K I + L N + L A
Sbjct: 104 DAGREGELVARLILDKVG-----NKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYEA 158
Query: 173 VDARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLVFS 212
AR E D VG+ TR TT + Q G + + I +V S
Sbjct: 159 ALARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQIVKS 200
>sp|Q73E74|TOP3_BACC1 DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 10987) GN=topB
PE=3 SV=1
Length = 729
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ ++N + + R SSVT+K I NL +P R N
Sbjct: 102 VATDAGREGELVARWIID--KVRIN---KPIKRLWISSVTDKAIKDGFANL-KPGRAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>sp|Q81IH1|TOP3_BACCR DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=topB PE=3 SV=1
Length = 729
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 45/226 (19%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ + + R SSVT+K I NL +P + N
Sbjct: 102 VATDAGREGELVARWIIDKVKLN-----KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGKY--GNLDSRFISLVFS 212
+ AR E D +G+ TR TT F + G + + ++++ S
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQLNCGRVQTPTVAMIAS 201
>sp|Q6HP19|TOP3_BACHK DNA topoisomerase 3 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=topB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ ++N + + R SSVT+K I NL +P + N
Sbjct: 102 VATDAGREGELVARWIID--KVRIN---KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>sp|Q63GK5|TOP3_BACCZ DNA topoisomerase 3 OS=Bacillus cereus (strain ZK / E33L) GN=topB
PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ ++N + + R SSVT+K I NL +P + N
Sbjct: 102 VATDAGREGELVARWIID--KVRIN---KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>sp|Q81Z97|TOP3_BACAN DNA topoisomerase 3 OS=Bacillus anthracis GN=topB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ ++N + + R SSVT+K I NL +P + N
Sbjct: 102 VATDAGREGELVARWIID--KVRIN---KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>sp|A0R979|TOP3_BACAH DNA topoisomerase 3 OS=Bacillus thuringiensis (strain Al Hakam)
GN=topB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+A IA VL K + +G GS YI VT +GH+ L
Sbjct: 3 KSVVIAEKPSVARDIARVLKCDK-----------KGNGYLEGSK-YI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQE---------ARGCGHLV 111
P + Y+ WN DL P K+ + + ++ + ++
Sbjct: 50 DPESYDVKYKKWNLE---DLPMLP-----ERLKLTVIKQTGKQFNAVKSQLLRKDVNEII 101
Query: 112 LWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNR---N 168
+ D REGE + +I+ ++N + + R SSVT+K I NL +P + N
Sbjct: 102 VATDAGREGELVARWIID--KVRIN---KPIKRLWISSVTDKAIKDGFANL-KPGKAYDN 155
Query: 169 EALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
+ AR E D +G+ TR TT F +
Sbjct: 156 LYASAVARSEADWYIGLNATRALTTRFNAQ 185
>sp|O58356|TOP1_PYRHO DNA topoisomerase 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=topA PE=3
SV=1
Length = 686
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDF 65
+L++AEKP++A IA LS + +K+ V ++ G + V S VGH++ L
Sbjct: 2 ILIIAEKPNVARKIAGALS-ERRPIKKSLFGVPYYEIFREGKK--LIVASAVGHLYGL-- 56
Query: 66 PPAYQDWNASNPLDLFQAPVHKAESNPKV--HICRHLNQEARGCGHLVLWLDCDREGENI 123
+D D+ PV+ AE + + L+ A+ ++ D D EGE I
Sbjct: 57 -APKRDVFGYPIFDIEWVPVYIAEKGKEYAREYIKALSVLAKRVREFIVACDYDTEGEVI 115
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQEIDL 181
+ ++ + R R +FS++T++D+L A NL EP N +A AR +D
Sbjct: 116 GYTALK---YACGVDPRVAKRMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARHILDW 171
Query: 182 KVGVAFTRFQT 192
GV +R T
Sbjct: 172 YWGVNLSRALT 182
>sp|O73954|TOP1_PYRFU DNA topoisomerase 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=topA PE=3 SV=2
Length = 1060
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 38/203 (18%)
Query: 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAY--------IKVTSVV 57
+L++AEKP++A IA L+ EV G Y + V S V
Sbjct: 2 ILVIAEKPNVARKIAMALA-----------EVKPIKKTLFGVPYYELIRDGKRLIVASAV 50
Query: 58 GHVFRLDFPPAYQDWNASNPLDLFQAPVHKAESNPK-----VHICRHLNQEARGCGHLVL 112
GH++ L D+ D+ PV+ AE + + + L++ R ++
Sbjct: 51 GHLYGL---APKNDFFGYPIFDVEWVPVYIAEKGKEYAKDYIKLLSVLSKRVR---EFIV 104
Query: 113 WLDCDREGENICFEVIE-CTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL 171
D D EGE I + ++ G A+R +FS++T++D++KA NL EP N +
Sbjct: 105 ACDYDTEGEVIGYTALKYACGVDPGVAKR----MKFSALTKRDLIKAWYNL-EPTINFGM 159
Query: 172 AVD--ARQEIDLKVGVAFTRFQT 192
A AR +D GV +R T
Sbjct: 160 ANAGIARHILDWYWGVNLSRALT 182
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K +++AEKPS+ +A VL + H+ +L YI VT +GH+ L
Sbjct: 3 KTVVLAEKPSVGRDLARVL------------KCHKKGNGYLEGDRYI-VTWALGHLVTLA 49
Query: 65 FPPA----YQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDC 116
P YQ W + P L + K + + + ++ + +V+ D
Sbjct: 50 DPEGYGKEYQSWRLEDLPIIPEPLKLVVIKKTGKQFQAVKSQLIRKDVK---DIVIATDA 106
Query: 117 DREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AVD 174
REGE + +IE + + R SSVT+K I NL E L +
Sbjct: 107 GREGELVARWIIEKA-----KVTKPLKRLWISSVTDKAIKDGFKNLKNGKDFENLYHSAV 161
Query: 175 ARQEIDLKVGVAFTRFQTTYFQGK 198
AR E D VG+ TR TT F +
Sbjct: 162 ARAEADWIVGINATRALTTKFNAQ 185
>sp|Q7A075|TOP3_STAAW DNA topoisomerase 3 OS=Staphylococcus aureus (strain MW2) GN=topB
PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q6G767|TOP3_STAAS DNA topoisomerase 3 OS=Staphylococcus aureus (strain MSSA476)
GN=topB PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q7A455|TOP3_STAAN DNA topoisomerase 3 OS=Staphylococcus aureus (strain N315) GN=topB
PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q99S17|TOP3_STAAM DNA topoisomerase 3 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topB PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q5HDV4|TOP3_STAAC DNA topoisomerase 3 OS=Staphylococcus aureus (strain COL) GN=topB
PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q2FW03|TOP3_STAA8 DNA topoisomerase 3 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topB PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q2FEN5|TOP3_STAA3 DNA topoisomerase 3 OS=Staphylococcus aureus (strain USA300)
GN=topB PE=3 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|P0C2W6|TOP3_STAAB Putative DNA topoisomerase 3 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=topB PE=5 SV=1
Length = 711
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKYLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I ++ NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPLRRLWISSVTKKAIQQSFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q6GEH9|TOP3_STAAR DNA topoisomerase 3 OS=Staphylococcus aureus (strain MRSA252)
GN=topB PE=3 SV=1
Length = 711
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRL 63
+K L++AEKPS+A IA L ++++ + ++ YI VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIADAL------------QINQKRNGYFENNQYI-VTWALGHLVTN 47
Query: 64 DFPPAY----QDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLD 115
P Y ++W + P + + K K L+ + + +++ D
Sbjct: 48 ATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVK---DIIIATD 104
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + +++ G ++ + R SSVT+K I + NL + + L A
Sbjct: 105 AGREGELVARLILDKVG-----NKKPLRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAA 159
Query: 174 DARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 160 LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q9YB01|TOP1_AERPE DNA topoisomerase 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=topA PE=3 SV=1
Length = 673
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 8 MVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVF-----R 62
MVAEKP A IA LS G+ R + V + + A I V GH+F
Sbjct: 1 MVAEKPKAAAKIAYALSDGRGVLRCSEYGVPYW--IVRRDGAAIVVAPSAGHLFGPHTDS 58
Query: 63 LDFPPAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGEN 122
FP +W D + K R L++ G V D D EG
Sbjct: 59 RGFPVFDFEWRPIFEFDRGAGYLSK--------FYRMLSRILPGASLYVNACDYDIEGSV 110
Query: 123 ICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLK 182
I F++IE G VN AR R +FS++ +DI +A + + A AR E+D
Sbjct: 111 IGFKIIEAFG-DVNRAR----RMKFSTLAPQDIRRAYARMERLDVEMIEAGMARSEMDWL 165
Query: 183 VGVAFTR 189
G+ +R
Sbjct: 166 WGINVSR 172
>sp|P47368|TOP1_MYCGE DNA topoisomerase 1 OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=topA PE=3 SV=1
Length = 709
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 19/166 (11%)
Query: 43 MFLGSHAYIKVTSVVGHV-------FRLD---FPPAYQDWNASNPLDLFQAPVHKAESNP 92
+L S + ++ S VGH+ F D + P ++DW + + Q +
Sbjct: 19 QYLPSDEF-EIVSTVGHIREMVYKNFGFDENTYTPIWEDWTKNKQKNPKQKHLL-----S 72
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K I + + +A ++ L D DREGE I + V + + K R F+ +T+
Sbjct: 73 KFEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLD---QKDKAKCKRITFNEITK 129
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGK 198
K ++ A+ + N + ARQ +D +G +R +Y Q K
Sbjct: 130 KAVVDALKQPRNIDLNWVESQFARQILDRMIGFRLSRLLNSYLQAK 175
>sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=topA PE=3 SV=1
Length = 853
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 76 NPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQV 135
NP ++A H K I L A ++ L D DREGE I + + E G
Sbjct: 68 NPYKNWKAEYHILPGKEK--IISELKNIANKVHYIYLATDLDREGEAIAWHLKEVIGGNS 125
Query: 136 NDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
RR V F+ +T+K I KA N+ + N N + AR+ +D VG
Sbjct: 126 LKFRRVV----FNEITKKSIEKAFQNIGKINMNRVYSQQARRFMDRIVG 170
>sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis GN=topX PE=3 SV=2
Length = 870
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 40 FDGMFLGSHAYIKVTSVVGHVFRLDFP----PAYQDWNASNPLDLFQAPVHKA--ESNPK 93
+ G + H YI V+ GH+ L P P Y+ + + +FQ P +K E+ +
Sbjct: 18 YYGYYENDH-YI-VSWCRGHLLELKNPEEMDPKYKLFQLEHLPLIFQ-PSYKVIQENAEQ 74
Query: 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEK 153
+ I L Q H V D DREGE I EV E G VN + +V+++ F +
Sbjct: 75 LQILVKLLQRP-DVDHAVNICDADREGELIYREVYEYAG--VNKKQSRVYKSSFEAA--- 128
Query: 154 DILKAMGNLVEPNRNEALA--VDARQEIDLKVGVAFTRFQTT 193
++ A+ L ++ + LA ARQ +D +G+ TR TT
Sbjct: 129 ELEAALNRLESASKYDGLAYSAKARQYLDYLLGMNITRGCTT 170
>sp|P14294|TOP3_ECOLI DNA topoisomerase 3 OS=Escherichia coli (strain K12) GN=topB PE=1
SV=1
Length = 653
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKPS+A +IA VL RK DG + + VT +GH+ P
Sbjct: 3 LFIAEKPSLARAIADVLPKPH---RKG-------DGFIECGNGQV-VTWCIGHLLEQAQP 51
Query: 67 PAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDRE 119
AY WN + DL P K + P+ + + LN R +V D DRE
Sbjct: 52 DAYDSRYARWNLA---DLPIVP-EKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDRE 107
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
G+ + EV++ + R++V R + + + + +A+ L + L V AR
Sbjct: 108 GQLLVDEVLDYLQL-APEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARA 166
Query: 178 EIDLKVGVAFTRFQT 192
D G+ TR T
Sbjct: 167 RADWLYGINMTRAYT 181
>sp|Q8Z6F5|TOP3_SALTI DNA topoisomerase 3 OS=Salmonella typhi GN=top3 PE=3 SV=1
Length = 649
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKPS+ +IA VL RK DG + + VT +GH+ P
Sbjct: 3 LFIAEKPSLGRAIADVLPKPH---RKG-------DGFIECGNGQV-VTWCIGHLLEQAQP 51
Query: 67 PAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDRE 119
AY WN + DL P K + P+ + + LN R G ++ D DRE
Sbjct: 52 DAYDSRYARWNLA---DLPIVP-EKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAGDPDRE 107
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
G+ + EV++ + R++V R + + + + +A+ L + L V AR
Sbjct: 108 GQLLVDEVLDYLQLPA-EKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCVSALARA 166
Query: 178 EIDLKVGVAFTRFQT 192
D G+ TR T
Sbjct: 167 RADWLYGINMTRAYT 181
>sp|P40687|TOP3_SALTY DNA topoisomerase 3 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=topB PE=3 SV=2
Length = 649
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKPS+ +IA VL RK DG + + VT +GH+ P
Sbjct: 3 LFIAEKPSLGRAIADVLPKPH---RKG-------DGFIECGNGQV-VTWCIGHLLEQAQP 51
Query: 67 PAYQD----WNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDRE 119
AY WN + DL P K + P+ + + LN R G ++ D DRE
Sbjct: 52 DAYDSRYARWNLA---DLPIVP-EKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAGDPDRE 107
Query: 120 GENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVD--ARQ 177
G+ + EV++ + R++V R + + + + +A+ L + L V AR
Sbjct: 108 GQLLVDEVLDYLQLPA-EKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCVSALARA 166
Query: 178 EIDLKVGVAFTRFQT 192
D G+ TR T
Sbjct: 167 RADWLYGINMTRAYT 181
>sp|P43704|TOP3_HAEIN DNA topoisomerase 3 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=topB PE=3 SV=1
Length = 651
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 19/192 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKPS+A +IA VL + H+ F+ VT VGH+ P
Sbjct: 3 LFIAEKPSLARAIADVLP-----------KPHQRGDGFIKCGDNDVVTWCVGHLLEQAEP 51
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLNQEAR---GCGHLVLWLDCDREGENI 123
AY L+ K + P+ + + L+ + LV D DREG+ +
Sbjct: 52 DAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVNAGDPDREGQLL 111
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN---EALAVDARQEID 180
EV + R K+ R S + + KA+ L +PNRN A + AR D
Sbjct: 112 VDEVFSYANLSA-EKRDKILRCLISDLNPSAVEKAVKKL-QPNRNFIPLATSALARARAD 169
Query: 181 LKVGVAFTRFQT 192
G+ TR T
Sbjct: 170 WLYGINMTRAYT 181
>sp|P57371|TOP1_BUCAI DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=topA PE=3 SV=1
Length = 861
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K I L A H+ L D DREGE I + + E G D+ K R F+ +T+
Sbjct: 88 KEKIISELKYIANQVKHIYLATDLDREGEAIAWHLKEVIG---GDS-SKFSRVVFNEITQ 143
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
I KA N+ N N A AR+ +D VG
Sbjct: 144 HSIQKAFKNVGHINMNRVHAQQARRFMDRIVG 175
>sp|Q5WAX6|TOP3_BACSK DNA topoisomerase 3 OS=Bacillus clausii (strain KSM-K16) GN=topB
PE=3 SV=1
Length = 729
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Query: 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLD 64
K ++AEKPS+A IA VL ++ +L + YI +T +GH+
Sbjct: 3 KKAVLAEKPSVARDIARVLG------------CNQKGNGYLEGNGYI-ITWALGHLVTHA 49
Query: 65 FP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRH-LNQEARGCGHLVLWLD 115
P Y+ W P L + ++ + H +H LN++ G +V+ D
Sbjct: 50 DPEHYGKQYKTWKLEELPMLPKRLELVVIK--QTAKQFHAVKHVLNRQ--DVGEVVIATD 105
Query: 116 CDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--AV 173
REGE + ++E ++ V R SSVT+K I L + R E L A
Sbjct: 106 AGREGELVARWILEKA-----HVKKPVKRLWISSVTDKAIKDGFKQLKDGKRYETLYAAA 160
Query: 174 DARQEIDLKVGVAFTRFQTT 193
AR E D VG+ TR TT
Sbjct: 161 AARAEADWYVGINGTRALTT 180
>sp|P0A2I1|TOP1_SALTY DNA topoisomerase 1 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=topA PE=3 SV=1
Length = 865
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K + L Q A H+ L D DREGE I + + E G +DAR R F+ +T+
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG--DDAR--YSRVVFNEITK 144
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
I +A E N N A AR+ +D VG
Sbjct: 145 NAIRQAFEQPGELNINRVNAQQARRFMDRVVG 176
>sp|P0A2I2|TOP1_SALTI DNA topoisomerase 1 OS=Salmonella typhi GN=topA PE=3 SV=1
Length = 865
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K + L Q A H+ L D DREGE I + + E G +DAR R F+ +T+
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG--DDAR--YSRVVFNEITK 144
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
I +A E N N A AR+ +D VG
Sbjct: 145 NAIRQAFEQPGELNINRVNAQQARRFMDRVVG 176
>sp|Q4L8B8|TOP3_STAHJ DNA topoisomerase 3 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topB PE=3 SV=1
Length = 711
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 4 LKVLMVAEKPSIALSIATVLS-GGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFR 62
+K L++AEKPS+A IA ++ GK R E + Y+ VT +GH+
Sbjct: 1 MKSLILAEKPSVARDIAEAMNIKGK---RNGYIE----------NEKYV-VTWALGHLVT 46
Query: 63 LDFP----PAYQDWNASN----PLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWL 114
P AY++W + P + + K K L+++ + +++
Sbjct: 47 NAQPEHYDKAYKEWKLEDLPIIPKRMQTVVIGKTSKQFKTVKSLILDKKVK---EVIIAT 103
Query: 115 DCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEAL--A 172
D REGE + +++ +V++ ++ + R SSVT+K I + L + + L A
Sbjct: 104 DAGREGELVARLILD----KVHN-KKPIKRLWISSVTKKAIQEGFKKLKDGREFQHLYEA 158
Query: 173 VDARQEIDLKVGVAFTRFQTTYF--QGKYGNLDSRFISLV 210
AR E D VG+ TR TT + Q G + + I LV
Sbjct: 159 ALARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLV 198
>sp|Q9CP53|TOP3_PASMU DNA topoisomerase 3 OS=Pasteurella multocida (strain Pm70) GN=topB
PE=3 SV=1
Length = 650
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 19/192 (9%)
Query: 7 LMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP 66
L +AEKPS+A +IA VL + H+ F+ A VT +GH+ P
Sbjct: 3 LFIAEKPSLARAIADVLP-----------KPHQRGDGFIKCGADDYVTWCIGHLLEQAEP 51
Query: 67 PAYQDWNASNPLDLFQAPVHKAESNPKVHICRHLN---QEARGCGHLVLWLDCDREGENI 123
AY L+ K + P+ + + L + L+ D DREG+ +
Sbjct: 52 DAYDPKFKQWRLEHLPIIPEKWQLIPRKDVHKQLTIVEKLIHQADILINAGDPDREGQLL 111
Query: 124 CFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRN---EALAVDARQEID 180
EV V D ++ R S + + KA+ N ++ NRN A + AR D
Sbjct: 112 VDEVFSYANLSV-DKLNQIQRCLISDLNPSAVEKAV-NKLQSNRNFIPLATSALARARAD 169
Query: 181 LKVGVAFTRFQT 192
G+ TR T
Sbjct: 170 WLYGINMTRAYT 181
>sp|P06612|TOP1_ECOLI DNA topoisomerase 1 OS=Escherichia coli (strain K12) GN=topA PE=1
SV=2
Length = 865
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 93 KVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTE 152
K + L Q A H+ L D DREGE I + + E G +DAR R F+ +T+
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG--DDAR--YSRVVFNEITK 144
Query: 153 KDILKAMGNLVEPNRNEALAVDARQEIDLKVG 184
I +A E N + A AR+ +D VG
Sbjct: 145 NAIRQAFNKPGELNIDRVNAQQARRFMDRVVG 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,013,340
Number of Sequences: 539616
Number of extensions: 3143516
Number of successful extensions: 9216
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 9168
Number of HSP's gapped (non-prelim): 76
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)