Query 048704
Match_columns 220
No_of_seqs 132 out of 1063
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7d_A DNA topoisomerase III; 100.0 6E-56 2E-60 425.9 13.2 197 6-219 2-205 (659)
2 1mw9_X DNA topoisomerase I; de 100.0 5.5E-53 1.9E-57 401.7 15.0 177 5-219 3-203 (592)
3 2gai_A DNA topoisomerase I; zi 100.0 1.3E-52 4.3E-57 401.7 12.5 171 4-219 5-175 (633)
4 1gku_B Reverse gyrase, TOP-RG; 100.0 1.6E-51 5.4E-56 413.3 16.4 194 4-219 505-723 (1054)
5 4ddu_A Reverse gyrase; topoiso 100.0 7.5E-51 2.6E-55 409.7 16.5 200 4-219 541-761 (1104)
6 2fcj_A Small toprim domain pro 96.5 0.0033 1.1E-07 47.7 4.7 66 96-165 40-107 (119)
7 1vdd_A Recombination protein R 96.4 0.0018 6E-08 54.2 3.1 57 105-165 132-196 (228)
8 1t6t_1 Putative protein; struc 94.8 0.035 1.2E-06 41.9 4.7 34 100-133 55-88 (118)
9 3vdp_A Recombination protein R 94.2 0.074 2.5E-06 44.0 5.7 55 105-163 148-210 (212)
10 3v7q_A Probable ribosomal prot 77.5 5.6 0.00019 28.4 5.9 75 94-181 25-99 (101)
11 3on1_A BH2414 protein; structu 74.5 8.9 0.00031 27.2 6.3 75 94-181 24-98 (101)
12 1dd9_A DNA primase, DNAG; topr 60.9 26 0.0009 30.4 7.6 59 95-157 197-256 (338)
13 1nui_A DNA primase/helicase; z 57.8 15 0.00052 30.1 5.3 30 104-133 196-225 (255)
14 4edg_A DNA primase; catalytic 55.4 17 0.00058 31.6 5.4 56 95-157 186-242 (329)
15 3v7e_A Ribosome-associated pro 52.3 20 0.00068 24.4 4.4 56 94-162 17-72 (82)
16 3m4i_A DNA gyrase subunit B; G 49.7 13 0.00044 31.1 3.5 25 107-131 91-115 (242)
17 3zy2_A Putative GDP-fucose pro 48.4 11 0.00038 33.4 3.0 36 93-132 264-301 (362)
18 2au3_A DNA primase; zinc ribbo 48.1 35 0.0012 30.1 6.4 47 107-157 287-334 (407)
19 3k9f_C DNA topoisomerase 4 sub 48.0 14 0.00048 31.3 3.5 56 107-162 119-192 (268)
20 3vi6_A 60S ribosomal protein L 43.4 53 0.0018 24.2 5.8 59 94-164 33-91 (125)
21 1q57_A DNA primase/helicase; d 42.7 18 0.00061 32.6 3.6 57 104-166 133-198 (503)
22 3j21_Z 50S ribosomal protein L 37.0 67 0.0023 22.3 5.3 42 94-144 21-62 (99)
23 3u5e_c L32, RP73, YL38, 60S ri 36.6 73 0.0025 22.5 5.5 57 94-162 28-84 (105)
24 3p04_A Uncharacterized BCR; SE 33.2 28 0.00096 24.4 2.6 36 152-187 18-55 (87)
25 3iz5_f 60S ribosomal protein L 33.0 58 0.002 23.5 4.5 56 94-161 32-87 (112)
26 4a18_G RPL30; ribosome, eukary 32.3 1.1E+02 0.0038 21.4 5.8 57 94-162 28-84 (104)
27 3nuh_B DNA gyrase subunit B; t 32.1 27 0.00091 31.5 2.9 25 107-131 106-130 (420)
28 1w41_A 50S ribosomal protein L 31.1 1.2E+02 0.004 21.1 5.7 56 94-161 22-77 (101)
29 3cpq_A 50S ribosomal protein L 31.0 1E+02 0.0035 21.8 5.5 57 94-162 27-83 (110)
30 1wzu_A Quinolinate synthetase 27.5 1.7E+02 0.0059 25.0 7.1 76 99-185 215-298 (300)
31 3jte_A Response regulator rece 26.9 98 0.0034 21.4 4.9 24 1-24 1-24 (143)
32 3eei_A 5-methylthioadenosine n 26.2 62 0.0021 25.7 4.0 44 1-47 1-44 (233)
33 4gfh_A DNA topoisomerase 2; to 25.4 45 0.0015 34.0 3.5 25 107-131 518-542 (1177)
34 2xzm_U Ribosomal protein L7AE 24.9 1.2E+02 0.004 22.3 5.0 56 94-161 30-85 (126)
35 3l4j_A DNA topoisomerase 2; to 22.9 56 0.0019 31.6 3.5 25 107-131 98-122 (757)
36 2xcs_B DNA gyrase subunit B, D 22.8 60 0.002 31.2 3.6 80 107-186 92-183 (692)
37 2kix_A BM2 protein; channel, t 22.5 5 0.00017 22.5 -2.3 12 52-63 20-31 (33)
38 1id1_A Putative potassium chan 22.4 1.3E+02 0.0043 21.8 4.8 29 104-132 69-97 (153)
39 4ap5_A GDP-fucose protein O-fu 22.4 64 0.0022 28.2 3.6 36 94-132 289-326 (408)
40 3u7r_A NADPH-dependent FMN red 21.7 55 0.0019 25.7 2.7 20 95-114 56-75 (190)
41 2xkj_E Topoisomerase IV; type 21.5 67 0.0023 31.2 3.7 56 107-162 114-183 (767)
42 3qx3_A DNA topoisomerase 2-bet 21.3 63 0.0022 31.5 3.5 25 107-131 131-155 (803)
43 2uvp_A HOBA; hypothetical prot 21.2 95 0.0032 24.8 3.9 43 98-143 45-89 (186)
44 3nm6_B MTA/SAH nucleosidase; h 20.3 1.5E+02 0.0052 23.2 5.2 41 4-47 2-43 (230)
45 2rjn_A Response regulator rece 20.1 2E+02 0.0069 20.1 5.5 23 3-25 7-29 (154)
No 1
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=6e-56 Score=425.90 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=162.0
Q ss_pred eEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceec-CCcceEEEEccccceecccCCCCC----CCCccCCCCCC
Q 048704 6 VLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFL-GSHAYIKVTSVVGHVFRLDFPPAY----QDWNASNPLDL 80 (220)
Q Consensus 6 ~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~vt~~~GHl~~l~~p~~y----~~w~~~~p~~l 80 (220)
.||||||||+|++||++||++ .++. +|||+ |+ +|+|||+.|||++|++|++| ++|+..+ .++
T Consensus 2 ~LiIaEKPs~Ak~Ia~~L~g~--~~r~--------~gy~e~g~--~~~Vt~~~GHl~~L~~p~~y~~~~k~W~~~~-lpi 68 (659)
T 1i7d_A 2 RLFIAEKPSLARAIADVLPKP--HRKG--------DGFIECGN--GQVVTWCIGHLLEQAQPDAYDSRYARWNLAD-LPI 68 (659)
T ss_dssp EEEEESSHHHHHHHHTTSCSC--CEEE--------TTEEEETT--TEEEEECSSCSEEECCHHHHCGGGGSCCSTT-CSC
T ss_pred EEEEEECHHHHHHHHHHhcCC--cccC--------CCcEeeCC--CEEEEeccchhhcCCCccccchhccccccCC-ccc
Confidence 699999999999999999643 2333 57787 77 89999999999999998765 5776543 112
Q ss_pred CCCCceeccCCCcHHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHh
Q 048704 81 FQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMG 160 (220)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~ 160 (220)
++.++......++.++++.|++++++||.||||||||||||+|+|+|+++++...+ ++++++|+|||++|+++|++||+
T Consensus 69 ~p~~~~~~v~~~~~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~-~~~~v~R~~fs~iT~~aI~~A~~ 147 (659)
T 1i7d_A 69 VPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPE-KRQQVQRCLINDLNPQAVERAID 147 (659)
T ss_dssp CCSSCCEEECGGGHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHH-HHHTCEECCCSCCSHHHHHHHHT
T ss_pred ccccceeeecccHHHHHHHHHHHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCcccc-CCCceEEEEEccCCHHHHHHHHh
Confidence 11111111234568899999999999999999999999999999999999986200 13689999999999999999999
Q ss_pred cCCCCC--cchHHHHHHHHHHHHHHHHhhhHHHHHHhhcccCCCCCCceeeccccceeccc
Q 048704 161 NLVEPN--RNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICF 219 (220)
Q Consensus 161 nl~~~~--~~l~~A~~aR~~~D~liG~nlTR~~t~~~~~~~~~~~~~~~S~GRvQtp~l~~ 219 (220)
||++++ .+|++||+||+++||+||||+||++|+.+++... +.++|+||||||||.+
T Consensus 148 nlr~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~lt~~~r~~~~---~~~lS~GRVQTPtL~l 205 (659)
T 1i7d_A 148 RLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGY---QGVLSVGRVQTPVLGL 205 (659)
T ss_dssp TCEEGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CSCCCCCTTHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCC---CCceecCccccchHHH
Confidence 999997 6999999999999999999999999998775321 3589999999999975
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=5.5e-53 Score=401.67 Aligned_cols=177 Identities=25% Similarity=0.260 Sum_probs=147.4
Q ss_pred ceEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceecCCcceEEEEccccceecccCC---------------CCC
Q 048704 5 KVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFP---------------PAY 69 (220)
Q Consensus 5 ~~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vt~~~GHl~~l~~p---------------~~y 69 (220)
+.||||||||+|++||++||. +|+||||+|||++|..| ++|
T Consensus 3 k~LiIaEkPs~Ak~Ia~~Lg~------------------------~~~Vt~~~GHl~~L~~~~~~~~~~~~~~~~~p~~y 58 (592)
T 1mw9_X 3 KALVIVESPAKAKTINKYLGS------------------------DYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKK 58 (592)
T ss_dssp CEEEEESCHHHHHHHHTTSCT------------------------TEEEEECCSCCEESCC-------------------
T ss_pred ceEEEEECHHHHHHHHHHhCC------------------------CcEEEeeccccccCCcccccccccccccccchhhh
Confidence 789999999999999999975 68999999999999875 455
Q ss_pred CC-----Ccc----CCCCCCCCCCceeccCCCcHHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCC
Q 048704 70 QD-----WNA----SNPLDLFQAPVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARR 140 (220)
Q Consensus 70 ~~-----w~~----~~p~~l~~~p~~~~~~~~~~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~ 140 (220)
+. |.. .+|.+.|...+.+ ..++.++++.|++++++||.||||||||||||+|+|+|+++++.. ++
T Consensus 59 ~~~~~~~~~~~~l~i~p~~~f~~~~~~--~~~k~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~----~~ 132 (592)
T 1mw9_X 59 PKKDERGALVNRMGVDPWHNWEAHYEV--LPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGD----DA 132 (592)
T ss_dssp ----CHHHHHHHHTEETTTTTEECCEE--CTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCSC----GG
T ss_pred chhhhcccchhcCCcCccccCceeEEE--cccHHHHHHHHHHHHhcCCeEEEcCCCCccccHHHHHHHHHhCCC----CC
Confidence 42 111 1122223222221 345789999999999999999999999999999999999999963 46
Q ss_pred cEEEEEecCcCHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhHHHHHHhhcccCCCCCCceeeccccceeccc
Q 048704 141 KVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICF 219 (220)
Q Consensus 141 ~v~R~~~sslt~~~I~~A~~nl~~~~~~l~~A~~aR~~~D~liG~nlTR~~t~~~~~~~~~~~~~~~S~GRvQtp~l~~ 219 (220)
+++|+|||++|+++|++||+|+++.+.+|++|++||+++||++|||+||++|..++ ..+|+||||||||.|
T Consensus 133 ~v~R~~fs~iT~~aI~~A~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~--------~~lS~GRVQtptL~l 203 (592)
T 1mw9_X 133 RYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIA--------RGLSAGRVQSVAVRL 203 (592)
T ss_dssp GEEECCCSSCSHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCCCTTHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhCCccccHHHHHHHHHHHHHHHHhhHhhhHHHHhhhc--------cccccCccchhHHHH
Confidence 89999999999999999999999999999999999999999999999999998652 369999999999965
No 3
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=1.3e-52 Score=401.66 Aligned_cols=171 Identities=23% Similarity=0.272 Sum_probs=148.0
Q ss_pred CceEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceecCCcceEEEEccccceecccCCCCCCCCccCCCCCCCCC
Q 048704 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASNPLDLFQA 83 (220)
Q Consensus 4 ~~~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vt~~~GHl~~l~~p~~y~~w~~~~p~~l~~~ 83 (220)
|+.||||||||+|++||++||. +|+|||+.|||++|..|+ + +|...+ .|..
T Consensus 5 mk~LvIaEkPs~Ak~Ia~~Lg~------------------------~y~Vt~s~GHl~~l~~~~-~-~~~~~~---~f~p 55 (633)
T 2gai_A 5 VKKYIVVESPAKAKTIKSILGN------------------------EYEVFASMGHIIDLPKSK-F-GVDLEK---DFEP 55 (633)
T ss_dssp --CEEEESCHHHHHHHHHHHGG------------------------GSEEEECCSCSEESCSSS-C-CEETTT---TSEE
T ss_pred CcEEEEEeCHHHHHHHHHHhCC------------------------CCEEEecccccccCCccC-C-CCCccc---CcCc
Confidence 6789999999999999999964 679999999999997763 2 454322 2321
Q ss_pred CceeccCCCcHHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcCC
Q 048704 84 PVHKAESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLV 163 (220)
Q Consensus 84 p~~~~~~~~~~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl~ 163 (220)
.+. ...++.++++.|++++++|| ||||||||||||+|+|+|+++++. +++++|+|||++|+++|++||+||+
T Consensus 56 ~~~--~~~~~~~~~~~lk~l~k~ad-iiiAtD~DREGE~I~~~i~~~~~~-----~~~v~R~~fs~iT~~aI~~a~~~~~ 127 (633)
T 2gai_A 56 EFA--VIKGKEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNT-----LGRKNRIVFSEITPRVIREAVKNPR 127 (633)
T ss_dssp CCE--ECTTCHHHHHHHHHHHHHSC-EEECCCSSHHHHHHHHHHHHHHTC-----TTSSCBCCCSSCCHHHHHHHHHSCB
T ss_pred eEE--ECccHHHHHHHHHHHHhhCC-EEEcCCCCcccCHHHHHHHHHcCC-----CCCeEEEEEccCCHHHHHHHHhCCC
Confidence 111 23467899999999999999 999999999999999999999986 4789999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhHHHHHHhhcccCCCCCCceeeccccceeccc
Q 048704 164 EPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICF 219 (220)
Q Consensus 164 ~~~~~l~~A~~aR~~~D~liG~nlTR~~t~~~~~~~~~~~~~~~S~GRvQtp~l~~ 219 (220)
+++.+|++|++||+++|||+|||+||++|+.++ ..+|+||||||||.+
T Consensus 128 ~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~--------~~lS~GRVQtptL~l 175 (633)
T 2gai_A 128 EIDMKKVRAQLARRILDRIVGYSLSPVLWRNFK--------SNLSAGRVQSATLKL 175 (633)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhHHHHHhhHHHCHHHHHhhh--------cccccCccchHHHHH
Confidence 999999999999999999999999999999763 369999999999965
No 4
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.6e-51 Score=413.29 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=161.0
Q ss_pred CceEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceecCCcceEEEEccccceecccCCCCCC-CCccCCCCCCCC
Q 048704 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQ-DWNASNPLDLFQ 82 (220)
Q Consensus 4 ~~~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vt~~~GHl~~l~~p~~y~-~w~~~~p~~l~~ 82 (220)
++.||||||||+|++||++||.. ..++.+++++|+|. .|+ +.++|||+.|||++|++|++|. .|. .+++
T Consensus 505 ~~~LiIaEkPs~ak~ia~~Lg~~-~~~~~~~~~~ye~~---~~~-~~~~vt~~~GHl~~l~~~~~~~~~~~-~~~~---- 574 (1054)
T 1gku_B 505 KPALFIVESPTKARQISRFFGKP-SVKVLDGAVVYEIP---MQK-YVLMVTASIGHVVDLITNRGFHGVLV-NGRF---- 574 (1054)
T ss_dssp EEEEEEESCHHHHHHHHGGGEEC-EEEEETTEEEEEEE---CSS-EEEEEEECCSCSEEECSSSSTTSSCC-SSSC----
T ss_pred CCEEEEEECHHHHHHHHHHhCCC-cccCCCCceeEEee---cCC-ceEEEEEeccccccCCCchhhcCccc-ccCc----
Confidence 46899999999999999999863 23344777777653 233 2469999999999999998753 454 2211
Q ss_pred CCceec------------------------cCCCcHHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCC
Q 048704 83 APVHKA------------------------ESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDA 138 (220)
Q Consensus 83 ~p~~~~------------------------~~~~~~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~ 138 (220)
+|+.+. ...++.++++.|++++++||.||||||||||||+|+|+|+++++.
T Consensus 575 ~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~l~~~~d~ii~atD~DrEGE~I~~~i~~~~~~----- 649 (1054)
T 1gku_B 575 VPVYASIKRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLSG----- 649 (1054)
T ss_dssp CCEEEECC------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHTT-----
T ss_pred CCcccccccccchhhhcccccccccccccccCccHHHHHHHHHHHHhcCCEEEECCCCChhhhHHHHHHHHHhCC-----
Confidence 233221 123568899999999999999999999999999999999999965
Q ss_pred CCcEEEEEecCcCHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhHHHHHHhhcccCCCCCCceeeccccceecc
Q 048704 139 RRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLIC 218 (220)
Q Consensus 139 ~~~v~R~~~sslt~~~I~~A~~nl~~~~~~l~~A~~aR~~~D~liG~nlTR~~t~~~~~~~~~~~~~~~S~GRvQtp~l~ 218 (220)
+++++|+|||++|+++|++||+||++++++|++||+||+++||++|||+||++|..+. +..+|+||||||||.
T Consensus 650 ~~~~~R~~~~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-------~~~lS~GRVQtptL~ 722 (1054)
T 1gku_B 650 CGAVKRAEFHEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFN-------NRNLSAGRAQTLVLG 722 (1054)
T ss_dssp SSEEEECCCSBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------CSSCCCCTTHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHhCCCCCcHhHHHHHHhHHHHHHHHHHHhCHHHHHhcc-------CceeeeccccchHHH
Confidence 5799999999999999999999999999999999999999999999999999997542 357999999999997
Q ss_pred c
Q 048704 219 F 219 (220)
Q Consensus 219 ~ 219 (220)
|
T Consensus 723 ~ 723 (1054)
T 1gku_B 723 W 723 (1054)
T ss_dssp H
T ss_pred H
Confidence 5
No 5
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=7.5e-51 Score=409.72 Aligned_cols=200 Identities=21% Similarity=0.226 Sum_probs=163.0
Q ss_pred CceEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceecCCcceEEEEccccceecccCCCCCCCCccCC-CC-CC-
Q 048704 4 LKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGSHAYIKVTSVVGHVFRLDFPPAYQDWNASN-PL-DL- 80 (220)
Q Consensus 4 ~~~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vt~~~GHl~~l~~p~~y~~w~~~~-p~-~l- 80 (220)
|++||||||||+|++||++||.+ .+++.+++.+|+|. .|+ ..++|||+.|||++|..|++|.+|...+ ++ +.
T Consensus 541 ~~~LvIaEkPs~Ak~ia~~Lg~~-~~~~~~~~~~ye~~---~~~-~~~~v~~~~GHl~~l~~~~~~~~~~~~~~~~~p~y 615 (1104)
T 4ddu_A 541 RSLLIIVESPTKAETLSRFLGRA-SSRKERNIIVHEAV---TGE-GVILFTATRGHVYDLVTKGGIHGVEEENGKFVPVY 615 (1104)
T ss_dssp BCEEEEESCHHHHHHHHHHHTCC-EEEEETTEEEEEEE---ETT-EEEEEEECCSCCEEECSSSTBTTBEEETTEEECEE
T ss_pred CCeEEEEECHHHHHHHHHHhCCC-ccccCCCceeEEEe---cCC-ceEEEEEeccccccCCCccccCccccccCCcCccc
Confidence 47999999999999999999874 22344677777652 243 1459999999999999999886554322 11 11
Q ss_pred ------------CC-----CCceec-cCCCcHHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcE
Q 048704 81 ------------FQ-----APVHKA-ESNPKVHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKV 142 (220)
Q Consensus 81 ------------~~-----~p~~~~-~~~~~~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v 142 (220)
|. +|.... ...++.++++.|++++++||.||+|||||||||+|+|+|+++++.. ++++
T Consensus 616 ~~~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~~----~~~~ 691 (1104)
T 4ddu_A 616 NSLKRCRDCGYQFTEDRDECPVCSSKNIDDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLPS----TRSL 691 (1104)
T ss_dssp EECEEETTTCCEECSCCSSCTTTCCSCEEEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTTT----CSCE
T ss_pred cccccccchhhhhccccccccccccccCccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhccc----CCCe
Confidence 11 011000 0125688999999999999999999999999999999999999853 5789
Q ss_pred EEEEecCcCHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhHHHHHHhhcccCCCCCCceeeccccceeccc
Q 048704 143 HRARFSSVTEKDILKAMGNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRFISLVFSSLFLICF 219 (220)
Q Consensus 143 ~R~~~sslt~~~I~~A~~nl~~~~~~l~~A~~aR~~~D~liG~nlTR~~t~~~~~~~~~~~~~~~S~GRvQtp~l~~ 219 (220)
+|+|||++|+++|++||+||++++++|++|++||+++||++|||+||++|..++ +.++|+||||||||.+
T Consensus 692 ~R~~f~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-------~~~lS~GRVQtptL~l 761 (1104)
T 4ddu_A 692 RRIEMHEITRYGFKKARESVRFVDFNLVKAQIVRRVQDRWIGFELSGKLQKRFG-------RSNLSAGRVQSTVLGW 761 (1104)
T ss_dssp EECCCSSSSHHHHHHHHHTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CSCCCCCHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhCCCcCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhC-------CcccccCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999998763 2479999999999975
No 6
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=96.45 E-value=0.0033 Score=47.68 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=48.2
Q ss_pred HHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccC--CCCcEEEEEecCcCHHHHHHHHhcCCCC
Q 048704 96 ICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVND--ARRKVHRARFSSVTEKDILKAMGNLVEP 165 (220)
Q Consensus 96 ~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~--~~~~v~R~~~sslt~~~I~~A~~nl~~~ 165 (220)
.++.|+++. +-..||+.||||+.||.|-..|.+++....-. ++.+. =+..+++++|++|+++....
T Consensus 40 ~l~~I~~~~-~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~---gVE~a~~~~I~~aL~~~~~~ 107 (119)
T 2fcj_A 40 RLEELADEL-EGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR---EVAAAPIWHLAQVLLRARFD 107 (119)
T ss_dssp HHHHHHHHT-TTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC---STTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh-cCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc---CcccCCHHHHHHHHHhcccc
Confidence 345565554 35689999999999999999999988763200 11222 36688999999999998754
No 7
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=96.38 E-value=0.0018 Score=54.21 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=47.2
Q ss_pred ccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEE--------ecCcCHHHHHHHHhcCCCC
Q 048704 105 RGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRAR--------FSSVTEKDILKAMGNLVEP 165 (220)
Q Consensus 105 ~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~--------~sslt~~~I~~A~~nl~~~ 165 (220)
..+++||+||+|+-|||..++.|.+.++.. ..+|.|+- +-=+++-.+.+||++.++.
T Consensus 132 ~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~~----~vkVTRiA~GiPvGgeLEY~De~TL~~Al~~R~~~ 196 (228)
T 1vdd_A 132 GQGMEVILATGTTVEGDATALYLQRLLEPL----GAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTV 196 (228)
T ss_dssp CTTCEEEECCCSSHHHHHHHHHHHHHHTTS----SCEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEEE
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHHHHHc----CCCEEEecccCCCCcceeeccHHHHHHHHHcCccc
Confidence 578999999999999999999999999864 46788863 2345688999999987654
No 8
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=94.77 E-value=0.035 Score=41.86 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHhccCCeEEEecCCChhHhHHHHHHHHHhCC
Q 048704 100 LNQEARGCGHLVLWLDCDREGENICFEVIECTGF 133 (220)
Q Consensus 100 lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~ 133 (220)
++.+.+..+.||+.||+|+.|+.|...+.+++..
T Consensus 55 i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l~~ 88 (118)
T 1t6t_1 55 VDMLEGKWEKVILLFDLDTHGERINQKMKELLSS 88 (118)
T ss_dssp HHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEECCChhHHHHHHHHHHhcCc
Confidence 3344345667999999999999999999999875
No 9
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=94.19 E-value=0.074 Score=43.96 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=43.0
Q ss_pred ccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEE--------ecCcCHHHHHHHHhcCC
Q 048704 105 RGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRAR--------FSSVTEKDILKAMGNLV 163 (220)
Q Consensus 105 ~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~--------~sslt~~~I~~A~~nl~ 163 (220)
.++++||+||+|.-|||.-+..|.+.++.. ..+|.|+= +-=+++-.+.+||++.+
T Consensus 148 ~~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~----~vkvTRiA~GiPvGgeLEY~D~~TL~~Al~~R~ 210 (212)
T 3vdp_A 148 GSVKEVILATNPDIEGEATAMYIAKLLKPF----GVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRR 210 (212)
T ss_dssp SCCSEEEECCCSSHHHHHHHHHHHHHHTTT----TCEEEECCBSBCTTCCGGGSCHHHHHHHHHTCE
T ss_pred CCCcEEEEECCCCccHHHHHHHHHHHhhhc----CCCeeeccccCcCCcchhhccHHHHHHHHHhCc
Confidence 468999999999999999999999999974 45677753 22345777778877654
No 10
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=77.54 E-value=5.6 Score=28.38 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcCCCCCcchHHHH
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl~~~~~~l~~A~ 173 (220)
.+..+.|++ .++..||+|.|++..+ -.++..+|... +.|+..+ .|.+++=.|+-.-.-.--.+.+++
T Consensus 25 ~~v~kai~~--gka~lViiA~D~~~~~---~~~i~~~c~~~----~vp~~~~----~s~~eLG~A~Gk~~~~~~ai~D~g 91 (101)
T 3v7q_A 25 DLVIKEIRN--ARAKLVLLTEDASSNT---AKKVTDKCNYY----KVPYKKV----ESRAVLGRSIGKEARVVVAVTDQG 91 (101)
T ss_dssp HHHHHHHHT--TCCSEEEEETTSCHHH---HHHHHHHHHHT----TCCEEEE----SCHHHHHHHTTSSCCSEEEECCHH
T ss_pred hhhHHHHhc--CceeEEEEeccccccc---hhhhccccccc----CCCeeee----chHHHHHhhhCccceEEEEEeccH
Confidence 455666654 5789999999999863 45666666542 4566533 689999999875421223556777
Q ss_pred HHHHHHHH
Q 048704 174 DARQEIDL 181 (220)
Q Consensus 174 ~aR~~~D~ 181 (220)
.|+...+.
T Consensus 92 ~a~~i~~~ 99 (101)
T 3v7q_A 92 FANKLISL 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
No 11
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=74.49 E-value=8.9 Score=27.19 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcCCCCCcchHHHH
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVEPNRNEALAV 173 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl~~~~~~l~~A~ 173 (220)
.+..+.|++ .++..||+|.|++.. +-.+|..+|... ..|+.. ..|.+++=.|+-.-.-.--.+.+++
T Consensus 24 ~~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~~----~ip~~~----~~s~~eLG~a~Gk~~~~~vai~d~g 90 (101)
T 3on1_A 24 EQVVKAVQN--GQVTLVILSSDAGIH---TKKKLLDKCGSY----QIPVKV----VGNRQMLGRAIGKHERVVIGVKDAG 90 (101)
T ss_dssp HHHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHHH----TCCEEE----ESCHHHHHHHTTSSCCSEEEECCHH
T ss_pred HHHHHHHHc--CCCcEEEEeCCCCHH---HHHHHHHHHHHc----CCCEEE----eCCHHHHHHHhCCcCeEEEEEECcc
Confidence 455666654 578999999999985 345677777653 456652 2689999998865311113556777
Q ss_pred HHHHHHHH
Q 048704 174 DARQEIDL 181 (220)
Q Consensus 174 ~aR~~~D~ 181 (220)
.|+.....
T Consensus 91 ~a~~i~~~ 98 (101)
T 3on1_A 91 FSRKLAAL 98 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 12
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=60.86 E-value=26 Score=30.40 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEec-CcCHHHHHH
Q 048704 95 HICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFS-SVTEKDILK 157 (220)
Q Consensus 95 ~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~s-slt~~~I~~ 157 (220)
+.++.|++ .+++||+|.|.|.-|..-++.+++.+..... ....++.+.+. ..++.++..
T Consensus 197 ~~~~~L~r---~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~-~g~~v~v~~lP~gkDpdd~l~ 256 (338)
T 1dd9_A 197 DHIQLLFR---ATNNVICCYDGDRAGRDAAWRALETALPYMT-DGRQLRFMFLPDGEDPDTLVR 256 (338)
T ss_dssp HHHHHHHH---HCSEEEEEEESSHHHHHHHHHHHHHHGGGCC-TTCEEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHh---cCCeEEEEeCCCHHHHHHHHHHHHHHHHHHh-CCCEEEEecCCCCCChHHHHH
Confidence 44444443 3588999999999999999999887321100 13467666665 566666553
No 13
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=57.76 E-value=15 Score=30.11 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=26.2
Q ss_pred hccCCeEEEecCCChhHhHHHHHHHHHhCC
Q 048704 104 ARGCGHLVLWLDCDREGENICFEVIECTGF 133 (220)
Q Consensus 104 ~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~ 133 (220)
+....+||+|.|.|.-|+.-+..+.+.+..
T Consensus 196 l~~~~~iil~~D~D~aG~~aa~~~~~~l~~ 225 (255)
T 1nui_A 196 FDQFEQIILMFDMDEAGRKAVEEAAQVLPA 225 (255)
T ss_dssp HTTBSCEEEECCSSHHHHHHHHHHHHHSCT
T ss_pred hcCCCEEEEEeCCCHHHHHHHHHHHHhccC
Confidence 455689999999999999999999998863
No 14
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=55.37 E-value=17 Score=31.61 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEec-CcCHHHHHH
Q 048704 95 HICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFS-SVTEKDILK 157 (220)
Q Consensus 95 ~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~s-slt~~~I~~ 157 (220)
..++.|++. +++||+|.|.|.-|..-++.+++.+... ...++.+.+. ..++.++..
T Consensus 186 ~~~~~L~r~---~~~Vil~~D~D~AG~~Aa~r~~~~l~~~----g~~v~v~~lP~gkDpdd~l~ 242 (329)
T 4edg_A 186 EHITFIRKL---TSNITLMFDGDFAGSEATLKTGQHLLQQ----GLNVFVIQLPSGMDPDEYIG 242 (329)
T ss_dssp HHHHHHHHH---CSEEEECCCSSHHHHHHHHHHHHHHHHT----TCEEEECCCCTTCCHHHHHH
T ss_pred HHHHHHHhc---CCeEEEEeCCCHHHHHHHHHHHHHHHhc----CCeEEEEECCCCCCHHHHHH
Confidence 445555443 6789999999999999999998887642 2345544443 567777653
No 15
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=52.31 E-value=20 Score=24.40 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcC
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNL 162 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl 162 (220)
.+..+.|++ +++..||+|.|+|. .+-.++..+|... +.|+. .+. |.+++=+|.-..
T Consensus 17 ~~v~kai~~--gkaklViiA~D~~~---~~~~~i~~lc~~~----~Ip~~--~v~--sk~eLG~a~Gk~ 72 (82)
T 3v7e_A 17 KQTVKALKR--GSVKEVVVAKDADP---ILTSSVVSLAEDQ----GISVS--MVE--SMKKLGKACGIE 72 (82)
T ss_dssp HHHHHHHTT--TCEEEEEEETTSCH---HHHHHHHHHHHHH----TCCEE--EES--CHHHHHHHHTCS
T ss_pred HHHHHHHHc--CCeeEEEEeCCCCH---HHHHHHHHHHHHc----CCCEE--EEC--CHHHHHHHhCCC
Confidence 445556654 46889999999998 3777888888763 45654 222 778887776543
No 16
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=49.73 E-value=13 Score=31.12 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHh
Q 048704 107 CGHLVLWLDCDREGENICFEVIECT 131 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~ 131 (220)
...|||.||+|-.|..|.-.++..+
T Consensus 91 Y~kIiIMTDADvDGsHI~~LLltff 115 (242)
T 3m4i_A 91 YHKIVLMADADVDGQHISTLLLTLL 115 (242)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH
T ss_pred cceEEEecCCCcccccchhHHHHHH
Confidence 5679999999999999986665433
No 17
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=48.42 E-value=11 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHhc--cCCeEEEecCCChhHhHHHHHHHHHhC
Q 048704 93 KVHICRHLNQEAR--GCGHLVLWLDCDREGENICFEVIECTG 132 (220)
Q Consensus 93 ~~~~~~~lk~~~~--~ad~ii~AtD~DrEGE~I~~~Il~~~~ 132 (220)
.+.++++|++.++ +++.|++|||++.| -.++-+.++
T Consensus 264 le~I~rqIk~~vk~~~lksVFIATDa~~~----~~ELk~~L~ 301 (362)
T 3zy2_A 264 KQQILEQIVEKVGSIGAKSVFVASDKDHM----IDEINEALK 301 (362)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESSCCC----HHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHHhh
Confidence 3556666666554 68899999999984 245555554
No 18
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=48.12 E-value=35 Score=30.11 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=33.3
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEec-CcCHHHHHH
Q 048704 107 CGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFS-SVTEKDILK 157 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~s-slt~~~I~~ 157 (220)
+++||+|.|.|.-|+.-++.+++.+... ...++.+.+. ..++.++..
T Consensus 287 ~~~vil~~D~D~AG~~Aa~r~~~~l~~~----g~~~~v~~lP~gkDpdd~l~ 334 (407)
T 2au3_A 287 TKKVYILYDGDDAGRKAMKSAIPLLLSA----GVEVYPVYLPEGYDPDEFIK 334 (407)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHT----TCEEEEECCCTTCCHHHHHH
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHhC----CCeEEEEECCCCCChHHHHH
Confidence 5899999999999999999988887642 2345544443 455555443
No 19
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=47.95 E-value=14 Score=31.32 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=35.7
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHhCCcccC---------CCCcEEEEEe---------cCcCHHHHHHHHhcC
Q 048704 107 CGHLVLWLDCDREGENICFEVIECTGFQVND---------ARRKVHRARF---------SSVTEKDILKAMGNL 162 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~---------~~~~v~R~~~---------sslt~~~I~~A~~nl 162 (220)
...|||.||+|-.|-.|.-.++..+-...+. ...|++|++- -.+++++..+.++++
T Consensus 119 Y~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~y~e~E~~~~~~~~ 192 (268)
T 3k9f_C 119 YDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQF 192 (268)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECSHHHHHHHHHHS
T ss_pred cceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEEeCHHHHHHHHHhc
Confidence 4579999999999999986665543211000 1235666653 245777777777664
No 20
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=43.36 E-value=53 Score=24.25 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcCCC
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNLVE 164 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl~~ 164 (220)
.+.++.|++ .++..||+|.|++.+ +-.+|..++... ..++.- + ..|.+++=.|+-.-..
T Consensus 33 ~~v~kaIr~--gkakLVIiA~Das~~---~~~ki~~~~~~~----~~~V~~--~-~~sk~eLG~A~Gk~~~ 91 (125)
T 3vi6_A 33 KQTLKMIRQ--GKAKLVILANNCPAL---RKSEIEYYAMLA----KTGVHH--Y-SGNNIELGTACGKYYR 91 (125)
T ss_dssp HHHHHHHHT--TCCSEEEECTTSCHH---HHHHHHHHHHHT----TCEEEE--C-SSCHHHHHHHTTCSSC
T ss_pred HHHHHHHHc--CCceEEEEeCCCCHH---HHHHHHHHHHHh----CCCcEE--E-cCCHHHHHHHhCCccc
Confidence 455666654 478999999999985 556776665432 345542 3 6689999998876443
No 21
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.70 E-value=18 Score=32.64 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred hccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcC---------HHHHHHHHhcCCCCC
Q 048704 104 ARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVT---------EKDILKAMGNLVEPN 166 (220)
Q Consensus 104 ~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt---------~~~I~~A~~nl~~~~ 166 (220)
++..+.||+|.|.|+.|+.-+..+.+.+.. . .++.+.+...+ .+++++.+++..+..
T Consensus 133 l~~~~~ivl~~D~D~aG~~aa~~~~~~l~~-----~-~~~~~~~p~kD~nd~l~~~g~~~~~~~i~~a~~~~ 198 (503)
T 1q57_A 133 FDQFEQIILMFDMDEAGRKAVEEAAQVLPA-----G-KVRVAVLPCKDANECHLNGHDREIMEQVWNAGPWI 198 (503)
T ss_dssp HHTEEEEEEECCSSHHHHHHHHHHHHHSCG-----G-GEEECCCSSSSHHHHHTTSCHHHHHHHHTTCCCCC
T ss_pred hcCCCEEEEEeCCCHHHHHHHHHHHHhccc-----C-cEEEEeCCCCCHHHHHHhcCHHHHHHHHHhcCCCC
Confidence 355689999999999999999999998874 1 34333222333 345666777666653
No 22
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.97 E-value=67 Score=22.35 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEE
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHR 144 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R 144 (220)
.+..+.|++ .++..||+|.|++ +.+-.+|..+|... +.|+..
T Consensus 21 ~~v~kai~~--gka~lViiA~D~~---~~~~~~i~~~c~~~----~ip~~~ 62 (99)
T 3j21_Z 21 NETIRLAKT--GGAKLIIVAKNAP---KEIKDDIYYYAKLS----DIPVYE 62 (99)
T ss_dssp HHHHHHHHH--TCCSEEEEECCCC---HHHHHHHHHHHHHT----TCCEEE
T ss_pred HHHHHHHHc--CCccEEEEeCCCC---HHHHHHHHHHHHHc----CCCEEE
Confidence 456666664 5789999999976 44567777777653 456543
No 23
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=36.58 E-value=73 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcC
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNL 162 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl 162 (220)
.+.++.|++ .++..||+|.|++.+ +-.+|..+|... +.|+. ....|.+++=+|+-..
T Consensus 28 ~~v~kai~~--gkaklVilA~D~~~~---~~~~i~~~c~~~----~ip~~---~~~~s~~eLG~A~Gk~ 84 (105)
T 3u5e_c 28 KSTVKSLRQ--GKSKLIIIAANTPVL---RKSELEYYAMLS----KTKVY---YFQGGNNELGTAVGKL 84 (105)
T ss_dssp HHHHHHHHT--TCCSEEEECTTSCHH---HHHHHHHHHHHH----TCEEE---ECSSCHHHHHHHTTCS
T ss_pred HHHHHHHHc--CCceEEEEeCCCCHH---HHHHHHHHHHHc----CCCEE---EeCCCHHHHHHHhCCc
Confidence 456666664 578899999999754 457777777652 34442 1356888888887643
No 24
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=33.20 E-value=28 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCC--CcchHHHHHHHHHHHHHHHHhh
Q 048704 152 EKDILKAMGNLVEP--NRNEALAVDARQEIDLKVGVAF 187 (220)
Q Consensus 152 ~~~I~~A~~nl~~~--~~~l~~A~~aR~~~D~liG~nl 187 (220)
..+|-++|++-++. |-.-.+...||+..||+-|..+
T Consensus 18 a~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~y 55 (87)
T 3p04_A 18 AQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCF 55 (87)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceE
Confidence 34555666555543 2233477889999999998754
No 25
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=32.96 E-value=58 Score=23.54 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhc
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGN 161 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~n 161 (220)
...++.|++ .++..||+|.|++. .+-.+|..+|... +.|+. +-+-|..++=+|+-.
T Consensus 32 ~~t~kai~~--gkakLVilA~D~~~---~~~~~i~~~c~~~----~ipv~---~~~~s~~eLG~A~Gk 87 (112)
T 3iz5_f 32 KTVLKTLRS--SLGKLIILANNCPP---LRKSEIETYAMLA----KISVH---HFHGNNVDLGTACGK 87 (112)
T ss_dssp HHHHHHHHT--TCCSEEEECSCCCH---HHHHHHHHHHHHT----TCCEE---CCCCTTCTHHHHHCT
T ss_pred HHHHHHHHc--CCceEEEEeCCCCH---HHHHHHHHHHHHc----CCcEE---EeCCCHHHHHHHhCC
Confidence 455666654 57899999999985 5778888888763 34554 223466667777654
No 26
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=32.34 E-value=1.1e+02 Score=21.44 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcC
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNL 162 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl 162 (220)
.+..+.|++ .++..||+|.|++.. .-.+|..+|... +.|+. .-..|.+++=.|+-.-
T Consensus 28 ~~v~kai~~--gkaklViiA~D~~~~---~~~~i~~~c~~~----~ip~~---~~~~s~~eLG~a~Gk~ 84 (104)
T 4a18_G 28 KSTIKAIRN--GTAKLVFISNNCPTV---RKSEIEYYASLA----QISIH---HFVGSNVELGTACGKY 84 (104)
T ss_dssp HHHHHHHHH--TCCCEEEECTTSCHH---HHHHHHHHHHHH----TCEEE---ECSSCHHHHHHHTTCS
T ss_pred HHHHHHHHc--CCceEEEEeCCCCHH---HHHHHHHHHHHc----CCcEE---EecCCHHHHHHHhCCc
Confidence 455666654 578999999999964 356666666542 34542 1255888888887644
No 27
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=32.07 E-value=27 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHh
Q 048704 107 CGHLVLWLDCDREGENICFEVIECT 131 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~ 131 (220)
...|||.||+|-.|-+|--.++..+
T Consensus 106 Y~kIiIMTDaDvDGsHIr~LLltff 130 (420)
T 3nuh_B 106 YHSIIIMTDADVDGSHIRTLLLTFF 130 (420)
T ss_dssp CSEEEECCCSSTTTTHHHHHHHHHH
T ss_pred cCeEEEecCCCCCcccchhHHHHHH
Confidence 5689999999999999976665543
No 28
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=31.07 E-value=1.2e+02 Score=21.09 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhc
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGN 161 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~n 161 (220)
.+..+.|++ +++..||+|.|++. .+-.+|..+|... ..|+. .-..|.+++-+|+-.
T Consensus 22 ~~v~kai~~--gka~lViiA~D~~~---~~~~~l~~~c~~~----~vp~~---~~~~s~~eLG~a~G~ 77 (101)
T 1w41_A 22 RKSIQYAKM--GGAKLIIVARNARP---DIKEDIEYYARLS----GIPVY---EFEGTSVELGTLLGR 77 (101)
T ss_dssp HHHHHHHHH--TCCSEEEEETTSCH---HHHHHHHHHHHHH----TCCEE---EESSCHHHHHHHTTC
T ss_pred HHHHHHHHc--CCCcEEEEeCCCCH---HHHHHHHHHHHhc----CCCEE---EecCCHHHHHHHhCC
Confidence 455666654 57899999999764 4556777777642 34554 223478888887764
No 29
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=31.00 E-value=1e+02 Score=21.84 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhcC
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGNL 162 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~nl 162 (220)
.+..+.|++ .++..||+|.|+.. .+-.+|..+|... ..|+. .-..|.+++=.|+-.-
T Consensus 27 ~~v~kai~~--gka~lViiA~D~~~---~~~~~l~~~c~~~----~Vp~~---~~~~sk~eLG~a~G~~ 83 (110)
T 3cpq_A 27 KRTIKFVKH--GEGKLVVLAGNIPK---DLEEDVKYYAKLS----NIPVY---QHKITSLELGAVCGKP 83 (110)
T ss_dssp HHHHHHHHT--TCCSEEEECTTCBH---HHHHHHHHHHHHT----TCCEE---ECCSCHHHHHHHTTCS
T ss_pred HHHHHHHHc--CCceEEEEeCCCCH---HHHHHHHHHHHHc----CCCEE---EEcCCHHHHHHHhCCc
Confidence 345556654 57889999999944 4456677777652 34544 3335888888887754
No 30
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=27.48 E-value=1.7e+02 Score=24.95 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=46.7
Q ss_pred HHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEE-------EEEecCcCHHHHHHHHhcCCCC-CcchH
Q 048704 99 HLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVH-------RARFSSVTEKDILKAMGNLVEP-NRNEA 170 (220)
Q Consensus 99 ~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~-------R~~~sslt~~~I~~A~~nl~~~-~~~l~ 170 (220)
.|.+.++..+++|++|+.+ |...+.... |.+.+. --|..-.|.+.|..+++++.+. .-.-.
T Consensus 215 ~ii~~~~~~~~~iv~TE~g-----~~~~l~~~~------p~k~f~~~~~~~~C~~Mk~~tl~~l~~~L~~~~~ei~v~~~ 283 (300)
T 1wzu_A 215 GMIKRACEWDEWVVFTERE-----MVYRLRKLY------PQKKFYPAREDAFCIGMKAITLKNIYESLKDMKYKVEVPEE 283 (300)
T ss_dssp HHHHHGGGCSEEEEESCTH-----HHHHHHHHC------TTSEEEETTTTCCC----CCCHHHHHHHHHHTCSBCCCCHH
T ss_pred HHHHHHHhCCCEEEEechH-----HHHHHHHHC------CCCEEEeCCCCCcCcCchhcCHHHHHHHHhcCCCeEEcCHH
Confidence 3445555666999999875 333333322 234333 2355668999999999998742 23556
Q ss_pred HHHHHHHHHHHHHHH
Q 048704 171 LAVDARQEIDLKVGV 185 (220)
Q Consensus 171 ~A~~aR~~~D~liG~ 185 (220)
-+..||.-+|+.+-+
T Consensus 284 ~~~~A~~~l~rMl~~ 298 (300)
T 1wzu_A 284 IARKARKAIERMLEM 298 (300)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 677888888887643
No 31
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.89 E-value=98 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCCceEEEEeChHHHHHHHHHcC
Q 048704 1 MAPLKVLMVAEKPSIALSIATVLS 24 (220)
Q Consensus 1 m~~~~~LiIaEKPs~Ak~ia~~L~ 24 (220)
|..+++|||-.-|.....+...|.
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~l~ 24 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLE 24 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHH
Confidence 664566776677888888999885
No 32
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=26.16 E-value=62 Score=25.68 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=28.1
Q ss_pred CCCCceEEEEeChHHHHHHHHHcCCCCcccccCCeeeeeecceecCC
Q 048704 1 MAPLKVLMVAEKPSIALSIATVLSGGKLYTRKASTEVHEFDGMFLGS 47 (220)
Q Consensus 1 m~~~~~LiIaEKPs~Ak~ia~~L~~~~~~~~~~~~~~~~~~~~~~g~ 47 (220)
|..|++.||+==|.-++.+.+.|.... ....++..+| .|.|.|.
T Consensus 1 m~~~~i~ii~A~~~E~~~l~~~l~~~~-~~~~~~~~~~--~G~~~g~ 44 (233)
T 3eei_A 1 MSLKTVAVIGAMEQEIELLREMMENVK-AVSFGRFSAY--EGELAGK 44 (233)
T ss_dssp --CCEEEEEESSHHHHHHHHHHCEEEE-EEEETTEEEE--EEEETTE
T ss_pred CCCCEEEEEecCHHHHHHHHHHhcccc-eeeeCCeEEE--EEEECCE
Confidence 665689999999999999999997521 1122344443 5666665
No 33
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=25.41 E-value=45 Score=34.03 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHh
Q 048704 107 CGHLVLWLDCDREGENICFEVIECT 131 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~ 131 (220)
...|||.||+|-.|.+|.-.++..+
T Consensus 518 Y~KIiIMTDADvDGsHIrtLLltfF 542 (1177)
T 4gfh_A 518 YGHLMIMTDQDHDGSHIKGLIINFL 542 (1177)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCcchHHHHHHHHH
Confidence 4579999999999999998887644
No 34
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=24.93 E-value=1.2e+02 Score=22.33 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCcccCCCCcEEEEEecCcCHHHHHHHHhc
Q 048704 94 VHICRHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQVNDARRKVHRARFSSVTEKDILKAMGN 161 (220)
Q Consensus 94 ~~~~~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~~~~~v~R~~~sslt~~~I~~A~~n 161 (220)
...++.|++ +++..||+|.|+|.+ .+-.+|-.+|... ..|+.. +. +.+++=+|.-.
T Consensus 30 ~~v~Kai~~--gka~LViiA~D~~p~--~~~~~i~~lc~~~----~Ip~~~--v~--sk~~LG~a~G~ 85 (126)
T 2xzm_U 30 HEVLRTIEA--KQALFVCVAEDCDQG--NYVKLVKALCAKN----EIKYVS--VP--KRASLGEYLGH 85 (126)
T ss_dssp HHHHHHHHH--TCCSEEEEESSCCST--THHHHHHHHHHHT----TCCEEE--ES--CSHHHHHHHTC
T ss_pred HHHHHHHHc--CCceEEEEeCCCChH--HHHHHHHHHHHHh----CCCEEE--EC--CHHHHHHHHCC
Confidence 455666654 589999999999874 3445666677653 456652 22 67778887763
No 35
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=22.95 E-value=56 Score=31.65 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHh
Q 048704 107 CGHLVLWLDCDREGENICFEVIECT 131 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~ 131 (220)
...|||.||+|-.|-+|--.++..+
T Consensus 98 Y~kiiImtDaD~DG~HI~~Llltff 122 (757)
T 3l4j_A 98 YGHLMIMTDQDHDGSHIKGLIINFL 122 (757)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH
T ss_pred cceEEEecCcccccccchhHHHHHH
Confidence 5679999999999999988776644
No 36
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=22.83 E-value=60 Score=31.17 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHhCCcccC--CCCcEEEE----Eec---CcCHHHHHHHHhcCCCCC---cchHHHHH
Q 048704 107 CGHLVLWLDCDREGENICFEVIECTGFQVND--ARRKVHRA----RFS---SVTEKDILKAMGNLVEPN---RNEALAVD 174 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~~--~~~~v~R~----~~s---slt~~~I~~A~~nl~~~~---~~l~~A~~ 174 (220)
...|||.||+|-.|.+|--.++..+-...+. ....++-+ +|- +++++++.+-+-|+..-. -.+-++..
T Consensus 92 Y~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~ 171 (692)
T 2xcs_B 92 YHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIE 171 (692)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCSSCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHH
T ss_pred cceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCchhhcccccCCHHHHHHHhcCccceeEEEEecCchhh
Confidence 4689999999999999987665543211000 01122222 243 688999999888763211 12234555
Q ss_pred HHHHHHHHHHHh
Q 048704 175 ARQEIDLKVGVA 186 (220)
Q Consensus 175 aR~~~D~liG~n 186 (220)
+-..+|.+.|=+
T Consensus 172 ~~~~~~~lmg~~ 183 (692)
T 2xcs_B 172 ADQTFEMLMGDV 183 (692)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHHcCCC
Confidence 667777776644
No 37
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=22.54 E-value=5 Score=22.47 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.3
Q ss_pred EEEccccceecc
Q 048704 52 KVTSVVGHVFRL 63 (220)
Q Consensus 52 ~vt~~~GHl~~l 63 (220)
.+.|+.|||-+.
T Consensus 20 f~awtighlnqi 31 (33)
T 2kix_A 20 FIAWTIGHLNQI 31 (33)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 467999998664
No 38
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=22.43 E-value=1.3e+02 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=20.6
Q ss_pred hccCCeEEEecCCChhHhHHHHHHHHHhC
Q 048704 104 ARGCGHLVLWLDCDREGENICFEVIECTG 132 (220)
Q Consensus 104 ~~~ad~ii~AtD~DrEGE~I~~~Il~~~~ 132 (220)
+.++|.||++|+.|..-..+...+.+..+
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~ 97 (153)
T 1id1_A 69 IDRCRAILALSDNDADNAFVVLSAKDMSS 97 (153)
T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHTS
T ss_pred hhhCCEEEEecCChHHHHHHHHHHHHHCC
Confidence 57899999999988766666555444433
No 39
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=22.39 E-value=64 Score=28.24 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhc--cCCeEEEecCCChhHhHHHHHHHHHhC
Q 048704 94 VHICRHLNQEAR--GCGHLVLWLDCDREGENICFEVIECTG 132 (220)
Q Consensus 94 ~~~~~~lk~~~~--~ad~ii~AtD~DrEGE~I~~~Il~~~~ 132 (220)
..+++.|++.++ +.+.|+||||++.. ..+++.+.+.
T Consensus 289 ~~~~~~i~~~~~~~~~~~VyiATD~~~~---~~~~l~~~~~ 326 (408)
T 4ap5_A 289 EGAVRKIRSLMKTHRLDKVFVATDAVRK---EYEELKKLLP 326 (408)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEECCCHH---HHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCchh---HHHHHHHhCC
Confidence 445666665554 67889999998753 2344444443
No 40
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.67 E-value=55 Score=25.72 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCCeEEEec
Q 048704 95 HICRHLNQEARGCGHLVLWL 114 (220)
Q Consensus 95 ~~~~~lk~~~~~ad~ii~At 114 (220)
..++.+++.+..||-||++|
T Consensus 56 ~~~~~l~~~i~~aD~~ii~t 75 (190)
T 3u7r_A 56 ESVLRLKDRIEHSDAVLAIT 75 (190)
T ss_dssp HHHHHHHHHHHTSSEEEEEC
T ss_pred HHHHHHHHHHHhCCcEEEec
Confidence 34555666677777777776
No 41
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=21.55 E-value=67 Score=31.21 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHhCCccc---------CCCCcEEEEE-----ecCcCHHHHHHHHhcC
Q 048704 107 CGHLVLWLDCDREGENICFEVIECTGFQVN---------DARRKVHRAR-----FSSVTEKDILKAMGNL 162 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~~~~~~---------~~~~~v~R~~-----~sslt~~~I~~A~~nl 162 (220)
...|||.||+|-.|.+|--.++..+-...+ -...|++|+. +...|+.+..+..+++
T Consensus 114 Y~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~pPl~kv~~gk~~~y~~~~~e~~~~~~~~ 183 (767)
T 2xkj_E 114 YGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELETILKNV 183 (767)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEESSHHHHHHHHHTC
T ss_pred cceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEecCCEEEEEECCEEEeeeCHHHHHHHHHHh
Confidence 457999999999999998766554321100 0123555553 3456777777777655
No 42
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=21.35 E-value=63 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.4
Q ss_pred CCeEEEecCCChhHhHHHHHHHHHh
Q 048704 107 CGHLVLWLDCDREGENICFEVIECT 131 (220)
Q Consensus 107 ad~ii~AtD~DrEGE~I~~~Il~~~ 131 (220)
...|||.||+|-.|.+|.-.++..+
T Consensus 131 Y~kIiIMTDADvDGsHI~~LLltff 155 (803)
T 3qx3_A 131 YGKIMIMTDQDQDGSHIKGLLINFI 155 (803)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH
T ss_pred cceEEEecCCCcccccchhHHHHHH
Confidence 5679999999999999987776654
No 43
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=21.18 E-value=95 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=26.7
Q ss_pred HHHHHHhccCCeEEEecCCChhHhHHHHHHHHHhCCc-c-cCCCCcEE
Q 048704 98 RHLNQEARGCGHLVLWLDCDREGENICFEVIECTGFQ-V-NDARRKVH 143 (220)
Q Consensus 98 ~~lk~~~~~ad~ii~AtD~DrEGE~I~~~Il~~~~~~-~-~~~~~~v~ 143 (220)
..|+..+. -..+|+.||.+|| +-...|+..++.. . .+|-.|+.
T Consensus 45 ~~l~~il~-G~s~iviTD~~R~--WF~~Yil~~IN~~~~~~RP~lPi~ 89 (186)
T 2uvp_A 45 QTISHVLN-GGSLLVSADSSRH--WFLNYILSNLNPKDLKERPLLSVI 89 (186)
T ss_dssp HHHHHHHT-TCEEEEEECGGGH--HHHHHHHHHHSCSCCTTCCCCCEE
T ss_pred HHHHHHhC-CCeEEEEeCchHH--HHHHHHHHHhcCccccCCCcceEE
Confidence 45555554 4579999999997 4445566666754 2 23444554
No 44
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=20.32 E-value=1.5e+02 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=28.2
Q ss_pred CceEEEEeChHHHHHHHH-HcCCCCcccccCCeeeeeecceecCC
Q 048704 4 LKVLMVAEKPSIALSIAT-VLSGGKLYTRKASTEVHEFDGMFLGS 47 (220)
Q Consensus 4 ~~~LiIaEKPs~Ak~ia~-~L~~~~~~~~~~~~~~~~~~~~~~g~ 47 (220)
|++.||+==|.-++.+.+ .|.... ....++..+| .|.++|.
T Consensus 2 ~~I~Ii~A~~~E~~~l~~~~l~~~~-~~~~~~~~~~--~G~~~g~ 43 (230)
T 3nm6_B 2 QKIGILGAMREEITPILELFGVDFE-EIPLGGNVFH--KGVYHNK 43 (230)
T ss_dssp CEEEEEESSHHHHHHHHHHHCCCCE-EEEETTEEEE--EEEETTE
T ss_pred cEEEEEeeCHHHHHHHHHHhccccc-EEEECCEEEE--EEEECCE
Confidence 689999999999999999 997631 1222444444 4666654
No 45
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.11 E-value=2e+02 Score=20.07 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCceEEEEeChHHHHHHHHHcCC
Q 048704 3 PLKVLMVAEKPSIALSIATVLSG 25 (220)
Q Consensus 3 ~~~~LiIaEKPs~Ak~ia~~L~~ 25 (220)
.+++|||-..+..+..+...|..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~ 29 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKR 29 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH
Confidence 35788888888889999999854
Done!