BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048705
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 247 bits (631), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 236/485 (48%), Gaps = 65/485 (13%)
Query: 6 DYGDALSKCVLFFEGQRSGKLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNIKFSF 65
DY L +LF+E QRSG+LP+ Q++TWRKDSAL +KF F
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 66 PMAFTTTMLAWSILEF--GSHMGPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGEPNAD 123
PMA+T T+LAW +++F G + ++A+KW TDYF+KA + + QVG+ +AD
Sbjct: 64 PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDAD 123
Query: 124 HNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQRASQ 183
H W RPEDM R +Y ++T+ PG F++ + YS LL A Q
Sbjct: 124 HAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQ 183
Query: 184 VFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSA-FQDELIWAAAWLFKATNRQSYM 242
+F FA+ Y+G Y+ S+ NF SA ++DEL+WAAAWL++ATN +Y+
Sbjct: 184 LFDFANNYRGKYSDSITDA-----------RNFYASADYRDELVWAAAWLYRATNDNTYL 232
Query: 243 KYVVDNIHYLENSTMRQSKEALFVGGSFAEFG----WDAKHAGINVLISRLVMNTSKSDP 298
+ E+L+ +G WD+K +G+ VL+++L + D
Sbjct: 233 N----------------TAESLYDEFGLQNWGGGLNWDSKVSGVQVLLAKLTNKQAYKDT 276
Query: 299 FVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRS 358
+ + ++ + ++P L+ G L +H +F++
Sbjct: 277 VQSYVN-YLINNQQKTPKGLLYIDMWGTL--------RHAANAAFIM------------- 314
Query: 359 LECGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSIDTHP 418
LE + ++ S Q A+TQ DY LG S++ G+G P R HHR SS P P
Sbjct: 315 LEAAELGLSASSYRQFAQTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCP-----P 367
Query: 419 KHVKCLEGSIFFKSKYPNFNLLTGAIVGGPDINDQYNDTRINWSQSEPTTYINAPFVGVL 478
C + F S PN+++L+GA+VGGPD ND Y D R ++ +E T NA F L
Sbjct: 368 APATCDWNT--FNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSAL 425
Query: 479 SYFKA 483
+ A
Sbjct: 426 AALVA 430
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 209 bits (531), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 148/480 (30%), Positives = 215/480 (44%), Gaps = 52/480 (10%)
Query: 6 DYGDALSKCVLFFEGQRSGKLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNIKFSF 65
+Y +AL K + F+E QRSGKLP R++WR DS L ++KF F
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 66 PMAFTTTMLAWSILEF--GSHMGPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGEPNAD 123
PMAFT TMLAW +E G + ++ L+W DYF+KA P + QVG+ +AD
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDAD 124
Query: 124 HNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQRASQ 183
H W E M R S+ V+ + PG F + Y+ L+Q A Q
Sbjct: 125 HKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQ 184
Query: 184 VFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKATNRQSYM- 242
++ FAD Y+G Y+ V +G +Y + GY QDEL+W A WL+KAT SY+
Sbjct: 185 LYTFADTYRGVYSDCVPAGA--FYNSWSGY--------QDELVWGAYWLYKATGDDSYLA 234
Query: 243 --KYVVDNIHYLENSTMRQSKEALFVGGSFAEFGWDAKHAGINVLISRLVMNTSKSDPFV 300
+Y D + + + +R + + WD K G VL+++ D
Sbjct: 235 KAEYEYDFLSTEQQTDLRSYRWTI---------AWDDKSYGTYVLLAKETGKQKYIDDAN 285
Query: 301 RHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRSLE 360
R D + V + V YS GG+ ++ +F+ LVY++ +
Sbjct: 286 RWLDYWTVGVN----GQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI-------- 333
Query: 361 CGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSIDTHPKH 420
+ V R A Q +Y LG NP + SY+VG+G PR HHR + D+
Sbjct: 334 --DDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDS---- 387
Query: 421 VKCLEGSIFFKSKYPNFNLLTGAIVGGP-DINDQYNDTRINWSQSEPTTYINAPFVGVLS 479
S N ++L GA+VGGP ND Y D R ++ +E T NA F L+
Sbjct: 388 ---------IASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALA 438
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 191 bits (484), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 149/484 (30%), Positives = 218/484 (45%), Gaps = 61/484 (12%)
Query: 6 DYGDALSKCVLFFEGQRSGKLPS-TQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNIKFS 64
+YG+AL K + F+E QRSGKL S T R+ WR DS L ++KF+
Sbjct: 25 NYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFN 84
Query: 65 FPMAFTTTMLAWSILEFGS--HMGPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGEPNA 122
PM+++ ML W++ E+ + + +KW DYF+K QVG+ +A
Sbjct: 85 LPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHA 144
Query: 123 DHNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQRAS 182
DH W E M R SY V+ ++PG FK + +YSK L+ A
Sbjct: 145 DHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAK 204
Query: 183 QVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKATNRQSYM 242
++F+FAD T G Y +G+ N S F DEL WAA WL+ ATN SY+
Sbjct: 205 ELFEFAD------TTKSDDG----YTAANGFYNSW-SGFYDELSWAAVWLYLATNDSSYL 253
Query: 243 KYV---VDNIHYLENSTMRQSKEALFVGGSFAEFGWDAKHAGINVLISRLVMNTSK-SDP 298
D Y + + + K A WD G +L++R+ + K +
Sbjct: 254 DKAESYSDKWGYEPQTNIPKYKWAQC---------WDDVTYGTYLLLARIKNDNGKYKEA 304
Query: 299 FVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRS 358
RH D + E +TY+ GL + + ++ T +FL VYS +
Sbjct: 305 IERHLDWWTTGYNGER----ITYTPKGLAWLDQWGSLRYATTTAFLACVYSDW------- 353
Query: 359 LECGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHR---GSSLPSID 415
E G+ + L + A++QADY LGS S++VG+G P+R HHR GS S
Sbjct: 354 -ENGDKEKAKTYL-EFARSQADYALGST--GRSFVVGFGENPPKRPHHRTAHGSWADSQM 409
Query: 416 THPKHVKCLEGSIFFKSKYPNFNLLTGAIVGGPDINDQYNDTRINWSQSEPTTYINAPFV 475
P+H ++L GA+VGGPD D Y D N++ +E NA FV
Sbjct: 410 EPPEHR----------------HVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFV 453
Query: 476 GVLS 479
G+L+
Sbjct: 454 GLLA 457
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 215/494 (43%), Gaps = 64/494 (12%)
Query: 2 VASRDYGDALSKCVLFFEGQRSGKLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNI 61
+ +YG+AL K ++F+E QRSG LP+ +R WR DS ++ ++
Sbjct: 1 AGTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHV 60
Query: 62 KFSFPMAFTTTMLAWSILEFGS--HMGPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGE 119
KF+ PM++T+ MLAWS+ E + K + +KW DYF+K PG QVG+
Sbjct: 61 KFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGD 120
Query: 120 PNADHNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQ 179
DH+ W E M R S+ V+ + PG FKS++ Y++ +
Sbjct: 121 GGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCIS 180
Query: 180 RASQVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKATNRQ 239
A +F AD+ + + S + S+F D+L WAA WL+ ATN
Sbjct: 181 HAKNLFDMADKAKSDAGYTAAS------------GYYSSSSFYDDLSWAAVWLYLATNDS 228
Query: 240 SYMKYVVDNIHYLENSTMRQSKEALFVGGSFAEFG--WDAKHAGINVLISRLVMNTSKSD 297
+Y+ Y+ N Q + + ++G WD H G +L+++L D
Sbjct: 229 TYLDKAE---SYVPNWGKEQQTDIIAY-----KWGQCWDDVHYGAELLLAKLTNKQLYKD 280
Query: 298 PFVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHR 357
+ D + V + T+ V+Y+ GL + + +H T +FL VY+ +
Sbjct: 281 SIEMNLDFWTTGV---NGTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE----- 331
Query: 358 SLECGNIAVTPSRL---IQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSI 414
TPS++ K+Q DY LGS S++VGYG P+ HHR
Sbjct: 332 -------GCTPSKVSVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHR------- 375
Query: 415 DTHPKHVKCLEGSIFFKSKYPNFNLLT--GAIVGGPDINDQYNDTRINWSQSEPTTYINA 472
GS + P ++ T GA+VGGPD D Y D N+ +E NA
Sbjct: 376 --------TAHGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNA 427
Query: 473 PFVGVLSYFKAYPH 486
F G L+ K Y H
Sbjct: 428 GFTGALA--KMYKH 439
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 215/494 (43%), Gaps = 64/494 (12%)
Query: 2 VASRDYGDALSKCVLFFEGQRSGKLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNI 61
+ +YG+AL K ++F+E QRSG LP+ +R WR DS ++ ++
Sbjct: 1 AGTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHV 60
Query: 62 KFSFPMAFTTTMLAWSILEFGS--HMGPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGE 119
KF+ PM++T+ MLAWS+ E + K + +KW DYF+K PG QVG+
Sbjct: 61 KFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGD 120
Query: 120 PNADHNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQ 179
DH+ W E M R S+ V+ + PG FKS++ Y++ +
Sbjct: 121 GGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCIS 180
Query: 180 RASQVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKATNRQ 239
A +F AD+ + + S + S+F D+L WAA WL+ ATN
Sbjct: 181 HAKNLFDMADKAKSDAGYTAAS------------GYYSSSSFYDDLSWAAVWLYLATNDS 228
Query: 240 SYMKYVVDNIHYLENSTMRQSKEALFVGGSFAEFG--WDAKHAGINVLISRLVMNTSKSD 297
+Y+ Y+ N Q + + ++G WD H G +L+++L D
Sbjct: 229 TYLDKAE---SYVPNWGKEQQTDIIAY-----KWGQXWDDVHYGAELLLAKLTNKQLYKD 280
Query: 298 PFVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHR 357
+ D + V + T+ V+Y+ GL + + +H T +FL VY+ +
Sbjct: 281 SIEMNLDFWTTGV---NGTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE----- 331
Query: 358 SLECGNIAVTPSRL---IQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSI 414
TPS++ K+Q DY LGS S++VGYG P+ HHR
Sbjct: 332 -------GCTPSKVSVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHR------- 375
Query: 415 DTHPKHVKCLEGSIFFKSKYPNFNLLT--GAIVGGPDINDQYNDTRINWSQSEPTTYINA 472
GS + P ++ T GA+VGGPD D Y D N+ +E NA
Sbjct: 376 --------TAHGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNA 427
Query: 473 PFVGVLSYFKAYPH 486
F G L+ K Y H
Sbjct: 428 GFTGALA--KMYKH 439
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 206/490 (42%), Gaps = 69/490 (14%)
Query: 3 ASRDYGDALSKCVLFFEGQRSGKLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXNIK 62
S +YG+AL K ++F+E Q SGKLP+ R WR DSAL+ ++K
Sbjct: 24 GSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVK 83
Query: 63 FSFPMAFTTTMLAWSILEFGSHM--GPEQKNAQEALKWGTDYFLKATSVPGKVIAQVGEP 120
F+ PM++T TML+W++ E+ + ++ ++W DYF+K QVG+
Sbjct: 84 FNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDG 143
Query: 121 NADHNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKILLQR 180
+ DH W E M R S+ V ++PG K N + LQ
Sbjct: 144 SKDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQH 203
Query: 181 ASQVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKATNRQS 240
A ++++FA+ T +G Y +GY N S F DEL WAA WL+ ATN +
Sbjct: 204 AKELYEFAEV------TKSDAG----YTAANGYYNSW-SGFYDELSWAAVWLYLATNDST 252
Query: 241 YM---KYVVDNIHYLENSTMRQSKEALFVGGSFAEFGWDAKHAGINVLISRLVMNTSKSD 297
Y+ + V N + S K A WD H G +L++++
Sbjct: 253 YLTKAESYVQNWPKISGSNTIDYKWA---------HCWDDVHNGAALLLAKITGKDIYKQ 303
Query: 298 PFVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHR 357
H D + E + Y+ GL + + ++ T +FL VYS ++
Sbjct: 304 IIESHLDYWTTGYNGER----IKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV----- 354
Query: 358 SLECGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGS-------- 409
G + + ++Q DY LGS S++VG+G P+R HHR +
Sbjct: 355 ----GCPSTKKEIYRKFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHSSWADSQ 408
Query: 410 SLPSIDTHPKHVKCLEGSIFFKSKYPNFNLLTGAIVGGPDINDQYNDTRINWSQSEPTTY 469
S+PS H L GA+VGGP +D Y D N+ +E
Sbjct: 409 SIPSYHRH---------------------TLYGALVGGPGSDDSYTDDISNYVNNEVACD 447
Query: 470 INAPFVGVLS 479
NA FVG L+
Sbjct: 448 YNAGFVGALA 457
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 130/485 (26%), Positives = 200/485 (41%), Gaps = 68/485 (14%)
Query: 2 VASRDYGDALSKCVLFFEGQRSG-KLPSTQRMTWRKDSALRXXXXXXXXXXXXXXXXXXN 60
+ DY AL ++FF+ + G + WR +
Sbjct: 1 AGTHDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDH 60
Query: 61 IKFSFPMAFTTTMLAWSILEFGSHM---GPEQKNAQEALKWGTDYFLKATSVPGKVIAQV 117
+KF P ++ +L WS+ EF G K Q+ LK+ TDYFLK+ QV
Sbjct: 61 VKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQ-LKYFTDYFLKSHPNSTTFYYQV 119
Query: 118 GEPNADHNCWERPEDMDTPRTS-YVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQYSKI 176
GE NADH W PE+ R S Y + ++P +K+ +S Y+
Sbjct: 120 GEGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATK 179
Query: 177 LLQRASQVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWLFKAT 236
L A +++ G N VG+G Y ++F D+L WAA WL+ AT
Sbjct: 180 CLNAAKELYAM-----GKANQGVGNGQSFYQA----------TSFGDDLAWAATWLYTAT 224
Query: 237 NRQSYMKYVVDNIHYLE-NSTMRQSKEALFVGGSFAEFGWDAKHAGINVLISRLVMNTSK 295
N + Y+ D ++ +TM ++K WD + + RL T K
Sbjct: 225 NDST---YITDAEQFITLGNTMNENKMQ-----DKWTMCWDDMYVPAAL---RLAQITGK 273
Query: 296 SDPFVRHADKFICSVLPESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRF 355
+ A +F + VT + GGL + ++ A S ++LVY +
Sbjct: 274 Q--IYKDAIEFNFNYWKTQ----VTTTPGGLKWLSNWGVLRYAAAESMVMLVYCK----- 322
Query: 356 HRSLECGNIAVTPSR-LIQVAKTQADYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSI 414
P + L+ +AK Q DY+LG NP +MSY++GYG + HHR ++ +
Sbjct: 323 ----------QNPDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTY 372
Query: 415 DTHPKHVKCLEGSIFFKSKYPNFNLLTGAIVGGPDINDQYNDTRINWSQSEPTTYINAPF 474
+ + K P +LLTGA+VGGPD ND++ D + +E NA
Sbjct: 373 -ANGDNAK------------PAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGL 419
Query: 475 VGVLS 479
VGVL+
Sbjct: 420 VGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 180/438 (41%), Gaps = 65/438 (14%)
Query: 60 NIKFSFPMAFTTTMLAWSILEFGSHMGP--EQKNAQEALKWGTDYFLKAT--SVPGKVIA 115
++KF P A+ + + W EF + +A+ L++ DYF++ T G V+A
Sbjct: 120 HVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVA 179
Query: 116 ---QVGEPNADHNCWERPEDMDTPRTSYVVNTTNPGXXXXXXXXXXXXXXXXXFKSANSQ 172
QVG+ + DH W PE+ R + + PG FK + Q
Sbjct: 180 FCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQ 239
Query: 173 YSKILLQRASQVFQFADQYQGSYNTSVGSGVCPYYCDFDGYMNFMDSAFQDELIWAAAWL 232
Y+ L A +F FA++ GV GY + S +QD+ WAAAWL
Sbjct: 240 YAAKSLDYAKALFDFAEKNP--------KGVVQGEDGPKGY--YGSSKWQDDYCWAAAWL 289
Query: 233 FKATNRQSYMKYVVDNIHYLENSTMRQSKEALFVGGSFAEFGWDAKHAGINVLISRLVMN 292
+ AT + Y+ Y ++ G + A IN L + N
Sbjct: 290 YLATQNEHYLDEAFKYYDYYAPPGWIHCWNDVWSGTA-------CILAEINDLYDKDSQN 342
Query: 293 TSKSDPFVRHADKFICSVLP-ESPTK--LVTYSSGGLLFKPGG-------SNSQHVTAMS 342
D + R ++K + P + L +S GG+ PGG ++++ TA
Sbjct: 343 F--EDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQ 400
Query: 343 FLLLVYSRYLTRFHRSLECGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVGYGRKFPR 402
+ LVY ++ TPS+ A++Q DYLLG NPL+ Y+VGY +
Sbjct: 401 LIALVYDKHH------------GDTPSKYANWARSQMDYLLGKNPLNRCYVVGYSSNSVK 448
Query: 403 RIHHRGSS-LPSIDTHPKHVKCLEGSIFFKSKYPNFNLLTGAIVGGPDINDQYNDTRINW 461
HHR +S L + H KY +L GA+VGGPD +DQ+ D ++
Sbjct: 449 YPHHRAASGLKDANDSSPH------------KY----VLYGALVGGPDASDQHVDRTNDY 492
Query: 462 SQSEPTTYINAPFVGVLS 479
+E NA FVG +
Sbjct: 493 IYNEVAIDYNAAFVGACA 510
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 113/300 (37%), Gaps = 71/300 (23%)
Query: 216 FMDSAFQDELIWAAAWLFKATNRQSYMKYVVDNIHYLE-NSTMRQSKEALFV-GGSFAEF 273
+ D DE WAA L+ T + Y Y++++ HYLE + M ++ A G + F
Sbjct: 348 YNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGCF 407
Query: 274 GWDAKHAGINVLISRLVMN-------TSKSDPFVRHADKFICSVLPES---PTKLVTYSS 323
W G+ + LV N + + AD+++ ++ + P K
Sbjct: 408 TWGTTQ-GLGTITLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQAEDER 466
Query: 324 GGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRSLECGNIAVTPSRLIQVAKTQADYLL 383
GG P GSNS + M +++ Y+ T + L+ ++ YLL
Sbjct: 467 GGY---PWGSNSFILNQM--IVMGYAYDFTGDSKYLDGMFDGIS-------------YLL 508
Query: 384 GSNPLSMSYMVGYGRKFPRRIHHRGSSLPSIDTHPKHVKCLEGSIFFKSKYPNFNLLTGA 443
G N + SY+ GYG + + H R + S F + P G
Sbjct: 509 GRNAMDQSYVTGYGERPLQNPHDR-------------FWTPQTSKRFPAPPP------GI 549
Query: 444 IVGGPDINDQYNDTRIN-------------------WSQSEPTTYINAPFVGVLSYFKAY 484
I GGP N ++ D IN WS +E T NAPF V +Y Y
Sbjct: 550 ISGGP--NSRFEDPTINAAVKKDTPPQKCFIDHTDSWSTNEITVNWNAPFAWVTAYLDQY 607
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 111/283 (39%), Gaps = 60/283 (21%)
Query: 211 DGYM--NFMDSAFQDELIWAAAWLFKATNRQSYMKYVVDNIHYLENSTMRQSKEALFVGG 268
DG + + D+ +DEL+WA+ L + T ++ + E L
Sbjct: 293 DGILTGEYGDAELRDELLWASCALLRMTGDSAWARVC----------------EPLLDLD 336
Query: 269 SFAEFGW-DAKHAGI-------NVLISRLVMNTSKSDPFVRHADKFICSVLPESPTKLVT 320
E GW D G+ +S V N KS +R D + + ES +
Sbjct: 337 LPWELGWADVALYGVMDYLRTPRAAVSDDVRNKVKSR-LLRELDAL--AAMAESHPFGIP 393
Query: 321 YSSGGLLFKPGGSNSQHVT-AMSFLLLVYSRYLTRFHRSLECGNIAVTPSRLIQVAKTQA 379
++ GSN + AM+FLL + V VA+ A
Sbjct: 394 MRDDDFIW---GSNMVLLNRAMAFLL---------------AEGVGVLHPAAHTVAQRAA 435
Query: 380 DYLLGSNPLSMSYMVGYGRKFPRRIHHRGSSLPSIDTHPKHVKCLEGSIFFKSKYPNFNL 439
DYL G+NPL Y+ G+G++ R HHR S +D HP + G PN +L
Sbjct: 436 DYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADDVD-HPVPGMVVGG--------PNRHL 486
Query: 440 ---LTGAIVGGPDINDQYNDTRINWSQSEPTTYINAPFVGVLS 479
+ A + G + Y D + ++S +E Y N+P V V++
Sbjct: 487 QDEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIA 529
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 111/297 (37%), Gaps = 71/297 (23%)
Query: 216 FMDSAFQDELIWAAAWLFKATNRQSYMKYVVDNIHYLE-NSTMRQSKEALFV-GGSFAEF 273
+ D DE WAA L+ T + Y Y++++ HYLE + M ++ A G + F
Sbjct: 348 YNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGCF 407
Query: 274 GWDAKHAGINVLISRLVMN-------TSKSDPFVRHADKFICSVLPES---PTKLVTYSS 323
W G+ + LV N + + AD+++ ++ + P K
Sbjct: 408 TWGTTQ-GLGTITLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQAEDER 466
Query: 324 GGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRSLECGNIAVTPSRLIQVAKTQADYLL 383
GG P GSNS + M +++ Y+ T + L+ ++ YLL
Sbjct: 467 GGY---PWGSNSFILNQM--IVMGYAYDFTGDSKYLDGMFDGIS-------------YLL 508
Query: 384 GSNPLSMSYMVGYGRKFPRRIHHRGSSLPSIDTHPKHVKCLEGSIFFKSKYPNFNLLTGA 443
G N + SY+ GYG + + H R + S F + P G
Sbjct: 509 GRNAMDQSYVTGYGERPLQNPHDR-------------FWTPQTSKRFPAPPP------GI 549
Query: 444 IVGGPDINDQYNDTRIN-------------------WSQSEPTTYINAPFVGVLSYF 481
I GGP N ++ D IN W ++ T NAPF V +Y
Sbjct: 550 ISGGP--NSRFEDPTINAAVKKDTPPQKCFIDHTDSWGTNQITVNWNAPFAWVTAYL 604
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 342 SFLLLVYSRYL--TRFHRSLECGNIAVTPSRLIQVAKTQADYLLGSNPLSMSYMVG---Y 396
SFL L +Y T FHR + I + L Q +K + + +P S+S G +
Sbjct: 33 SFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE---VQQSPRSISGFPGGAPF 89
Query: 397 GRKFPRRIHHRGSSLPSIDTHPKHVKCLEGSIFFKS--KYPNFNLLTGAIVGGPDINDQY 454
+F R+ H+G + S+ KH E I FKS N + + G +VGG D+ Q+
Sbjct: 90 EDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQW 149
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
Length = 345
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 313 ESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRS-----LECGNIAV 366
+SPT+++ + L +KP N + + A L L Y+T FH S L GNI V
Sbjct: 159 DSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICV 217
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
Length = 346
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 313 ESPTKLVTYSSGGLLFKPGGSNSQHVTAMSFLLLVYSRYLTRFHRS-----LECGNIAV 366
+SPT+++ + L +KP N + + A L L Y+T FH S L GNI V
Sbjct: 159 DSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICV 217
>pdb|3H3E|A Chain A, Crystal Structure Of Tm1679, A Metal-Dependent Hydrolase
Of The Beta-Lactamase Superfamily
Length = 267
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 274 GWDAKHAGINVLISRLVMNTSKSDPFVRHADKFICSVLPESPTKLVTYS----SGGLLFK 329
G++++H G +VL+ ++ +T KSD F+++A K LP+ L+++ +GGLL+
Sbjct: 26 GFESEH-GFSVLVDSVLFDTGKSDVFLKNARKLGID-LPKDV--LISHGHYDHAGGLLYL 81
Query: 330 PG 331
G
Sbjct: 82 SG 83
>pdb|4F7U|Q Chain Q, Macromolecular Machine 6
pdb|4F7U|P Chain P, Macromolecular Machine 6
Length = 129
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 74 LAWSILEFGSHMGPEQK---------NAQEALKWGTDYFLKATSVPGKVIAQVGEPNADH 124
L+W E + E K N ++ + + D+ ++ V G V Q GE
Sbjct: 42 LSWQPTELAEGISIEWKQVSLHGISSNPRKCIYFMLDHKVEWNGVYGDVDEQFGEVT--- 98
Query: 125 NCWERPEDMDTPRTSYVVNTT 145
CW PED+ T T Y TT
Sbjct: 99 ECWLMPEDIATVDTMYSAMTT 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,312,847
Number of Sequences: 62578
Number of extensions: 564706
Number of successful extensions: 1398
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 21
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)