Query 048707
Match_columns 114
No_of_seqs 137 out of 1053
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 9E-25 2E-29 151.8 9.1 112 1-112 230-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 1.2E-22 2.5E-27 137.4 6.3 88 1-89 152-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.7 7.1E-16 1.5E-20 107.6 9.6 94 3-99 211-305 (306)
4 PF05891 Methyltransf_PK: AdoM 99.4 1.9E-12 4.2E-17 85.8 7.1 81 7-101 122-202 (218)
5 TIGR00740 methyltransferase, p 99.3 4.6E-13 1E-17 90.5 2.3 105 5-111 120-238 (239)
6 PLN02233 ubiquinone biosynthes 99.2 8.8E-11 1.9E-15 80.6 9.6 100 8-111 146-260 (261)
7 PRK15451 tRNA cmo(5)U34 methyl 99.2 7E-12 1.5E-16 85.3 2.3 108 5-112 123-242 (247)
8 PLN02232 ubiquinone biosynthes 99.2 1.2E-10 2.6E-15 74.6 7.8 100 8-111 45-159 (160)
9 PTZ00098 phosphoethanolamine N 99.2 5E-10 1.1E-14 76.9 10.0 91 4-102 112-204 (263)
10 PF13489 Methyltransf_23: Meth 99.1 2.3E-10 5E-15 72.3 6.9 82 8-97 79-160 (161)
11 PF01209 Ubie_methyltran: ubiE 99.1 2.2E-11 4.8E-16 82.3 2.0 100 8-112 117-233 (233)
12 COG2226 UbiE Methylase involve 99.1 2.3E-09 4.9E-14 72.6 10.0 104 4-112 114-237 (238)
13 PRK00216 ubiE ubiquinone/menaq 99.1 2E-09 4.4E-14 72.1 9.7 100 8-112 122-238 (239)
14 PLN02490 MPBQ/MSBQ methyltrans 99.0 2.2E-09 4.7E-14 76.1 9.3 81 8-103 179-259 (340)
15 TIGR00452 methyltransferase, p 99.0 3.1E-09 6.8E-14 74.7 9.7 87 7-101 188-274 (314)
16 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 3.8E-09 8.2E-14 70.1 9.3 100 8-112 107-223 (223)
17 PRK15068 tRNA mo(5)U34 methylt 99.0 5.1E-09 1.1E-13 73.9 9.6 87 8-102 190-276 (322)
18 TIGR02752 MenG_heptapren 2-hep 99.0 3.2E-09 7E-14 71.2 8.3 100 8-112 115-231 (231)
19 PRK11873 arsM arsenite S-adeno 98.9 1.2E-08 2.5E-13 70.3 9.5 84 8-100 147-230 (272)
20 PLN02336 phosphoethanolamine N 98.9 1E-08 2.3E-13 75.5 9.1 83 8-101 333-415 (475)
21 PLN02244 tocopherol O-methyltr 98.9 3.4E-08 7.3E-13 70.2 9.8 92 8-102 187-280 (340)
22 PF06080 DUF938: Protein of un 98.9 3.7E-08 8.1E-13 65.1 9.1 102 8-112 103-204 (204)
23 PLN02396 hexaprenyldihydroxybe 98.8 1.1E-08 2.4E-13 72.1 6.5 91 8-100 199-289 (322)
24 smart00828 PKS_MT Methyltransf 98.8 3.1E-08 6.8E-13 66.2 7.8 80 8-103 68-147 (224)
25 PRK14103 trans-aconitate 2-met 98.8 2.9E-08 6.4E-13 67.7 7.7 89 7-97 89-181 (255)
26 PRK08317 hypothetical protein; 98.7 1.2E-07 2.6E-12 63.3 8.0 88 8-100 88-176 (241)
27 PRK11036 putative S-adenosyl-L 98.7 7E-08 1.5E-12 65.9 6.5 94 8-103 113-210 (255)
28 KOG1540 Ubiquinone biosynthesi 98.7 1.9E-07 4E-12 63.6 7.7 88 4-97 172-278 (296)
29 PLN02336 phosphoethanolamine N 98.6 1.4E-07 3E-12 69.6 7.7 76 8-97 104-179 (475)
30 PRK11207 tellurite resistance 98.6 3.7E-07 8.1E-12 60.2 8.9 73 8-98 96-168 (197)
31 TIGR00477 tehB tellurite resis 98.5 1.5E-06 3.2E-11 57.3 9.2 74 7-99 94-168 (195)
32 TIGR01983 UbiG ubiquinone bios 98.5 5.1E-07 1.1E-11 60.2 6.4 86 7-100 112-203 (224)
33 KOG2361 Predicted methyltransf 98.5 5.9E-07 1.3E-11 60.7 6.6 87 9-98 146-235 (264)
34 PF08003 Methyltransf_9: Prote 98.5 1.5E-06 3.3E-11 60.6 8.6 85 8-101 183-268 (315)
35 PRK05134 bifunctional 3-demeth 98.5 7.5E-07 1.6E-11 59.9 7.0 88 8-100 115-205 (233)
36 PF08241 Methyltransf_11: Meth 98.4 1.8E-07 3.8E-12 53.8 2.7 35 8-44 61-95 (95)
37 PF02353 CMAS: Mycolic acid cy 98.4 5.8E-07 1.3E-11 62.2 4.4 93 7-102 127-219 (273)
38 PRK04266 fibrillarin; Provisio 98.3 5.4E-06 1.2E-10 56.0 8.4 80 8-113 142-226 (226)
39 PRK12335 tellurite resistance 98.3 7.9E-06 1.7E-10 56.9 9.3 74 8-99 185-258 (287)
40 smart00138 MeTrc Methyltransfe 98.3 1.1E-06 2.4E-11 60.6 4.6 40 8-47 204-243 (264)
41 PF11968 DUF3321: Putative met 98.3 1.1E-05 2.3E-10 53.9 8.8 74 8-103 105-184 (219)
42 PF08242 Methyltransf_12: Meth 98.2 8.8E-07 1.9E-11 51.9 2.7 34 7-42 66-99 (99)
43 PRK11705 cyclopropane fatty ac 98.2 9.2E-06 2E-10 58.8 7.9 87 7-102 228-314 (383)
44 PF05401 NodS: Nodulation prot 98.2 4.6E-06 1E-10 54.9 5.7 73 8-101 107-180 (201)
45 TIGR02021 BchM-ChlM magnesium 98.2 9.8E-06 2.1E-10 54.1 7.4 89 7-103 119-209 (219)
46 PRK06202 hypothetical protein; 98.2 6.6E-06 1.4E-10 55.4 6.3 84 8-101 130-223 (232)
47 KOG4300 Predicted methyltransf 98.2 2.1E-05 4.5E-10 52.4 8.3 90 8-103 146-235 (252)
48 TIGR03438 probable methyltrans 98.2 2.7E-05 5.8E-10 54.6 9.1 36 9-44 140-175 (301)
49 PF04672 Methyltransf_19: S-ad 98.1 1.7E-06 3.6E-11 59.5 2.8 80 10-97 153-233 (267)
50 PRK10611 chemotaxis methyltran 98.1 3.9E-06 8.4E-11 58.5 4.4 39 8-46 224-262 (287)
51 TIGR02072 BioC biotin biosynth 98.1 7.7E-06 1.7E-10 54.7 5.3 77 8-99 99-175 (240)
52 KOG1270 Methyltransferases [Co 98.1 3.5E-06 7.5E-11 57.6 3.5 87 7-100 158-249 (282)
53 PRK05785 hypothetical protein; 98.1 4.1E-05 8.9E-10 51.6 8.6 97 8-112 111-224 (226)
54 PRK07580 Mg-protoporphyrin IX 98.1 2.5E-05 5.5E-10 52.2 7.4 89 8-103 128-217 (230)
55 PF01739 CheR: CheR methyltran 98.1 2.8E-06 6.1E-11 56.2 2.7 39 8-46 137-175 (196)
56 PF12147 Methyltransf_20: Puta 98.1 5.1E-05 1.1E-09 52.8 8.7 96 8-112 210-311 (311)
57 COG2227 UbiG 2-polyprenyl-3-me 98.1 4.4E-06 9.6E-11 56.4 3.4 87 7-101 124-216 (243)
58 PF13847 Methyltransf_31: Meth 98.0 1.4E-06 3.1E-11 54.9 0.7 80 7-92 73-152 (152)
59 PF12847 Methyltransf_18: Meth 98.0 1.1E-05 2.3E-10 48.1 4.3 41 6-46 69-111 (112)
60 PRK01683 trans-aconitate 2-met 98.0 3.8E-05 8.2E-10 52.4 7.5 84 7-95 93-182 (258)
61 COG2230 Cfa Cyclopropane fatty 98.0 2.1E-05 4.5E-10 54.6 5.6 89 8-103 138-226 (283)
62 PLN02585 magnesium protoporphy 98.0 6.5E-05 1.4E-09 53.1 8.2 88 8-103 213-302 (315)
63 PTZ00146 fibrillarin; Provisio 98.0 0.00015 3.2E-09 50.8 9.7 83 7-113 202-287 (293)
64 TIGR00537 hemK_rel_arch HemK-r 98.0 0.00019 4.1E-09 46.5 9.7 77 7-112 82-177 (179)
65 PRK06922 hypothetical protein; 97.9 1.7E-05 3.7E-10 60.6 4.9 45 8-52 488-543 (677)
66 PRK10258 biotin biosynthesis p 97.9 5.8E-05 1.3E-09 51.3 6.8 79 8-95 104-182 (251)
67 TIGR03840 TMPT_Se_Te thiopurin 97.8 0.00033 7.2E-09 46.9 9.4 72 7-98 113-185 (213)
68 COG1352 CheR Methylase of chem 97.8 4.8E-05 1E-09 52.6 5.1 42 5-46 199-241 (268)
69 PF05148 Methyltransf_8: Hypot 97.8 0.00018 3.9E-09 48.0 7.3 76 8-113 123-198 (219)
70 PRK13255 thiopurine S-methyltr 97.8 0.0004 8.6E-09 46.7 8.8 74 6-99 115-189 (218)
71 PF13649 Methyltransf_25: Meth 97.8 2E-05 4.2E-10 46.4 2.2 34 7-40 67-101 (101)
72 PLN03075 nicotianamine synthas 97.7 4.7E-05 1E-09 53.3 4.3 79 7-113 195-275 (296)
73 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 7E-05 1.5E-09 51.4 4.6 82 5-100 155-239 (256)
74 PF03848 TehB: Tellurite resis 97.5 0.0003 6.5E-09 46.4 5.4 73 8-98 95-167 (192)
75 KOG3045 Predicted RNA methylas 97.5 0.0014 3.1E-08 45.2 8.2 77 8-114 229-305 (325)
76 TIGR02081 metW methionine bios 97.4 0.0008 1.7E-08 44.1 6.6 88 8-101 76-168 (194)
77 TIGR03587 Pse_Me-ase pseudamin 97.4 0.0007 1.5E-08 45.0 6.1 41 8-50 106-146 (204)
78 COG4627 Uncharacterized protei 97.3 6.7E-05 1.4E-09 47.8 0.7 40 8-47 48-87 (185)
79 PF05219 DREV: DREV methyltran 97.2 0.0034 7.4E-08 43.2 7.9 83 8-102 152-242 (265)
80 PRK00517 prmA ribosomal protei 97.2 0.008 1.7E-07 41.1 9.5 67 7-107 179-245 (250)
81 COG4798 Predicted methyltransf 97.2 0.002 4.4E-08 42.7 6.1 79 8-101 123-206 (238)
82 cd02440 AdoMet_MTases S-adenos 97.1 0.0016 3.5E-08 36.9 5.0 39 6-45 65-103 (107)
83 PRK13256 thiopurine S-methyltr 97.1 0.0031 6.8E-08 42.7 6.5 44 7-50 124-167 (226)
84 KOG2899 Predicted methyltransf 97.0 0.0085 1.8E-07 41.1 8.1 85 5-97 164-254 (288)
85 PRK08287 cobalt-precorrin-6Y C 96.9 0.0067 1.4E-07 39.5 6.8 57 8-98 98-154 (187)
86 PRK14968 putative methyltransf 96.8 0.024 5.2E-07 36.5 9.0 48 25-101 127-174 (188)
87 TIGR03534 RF_mod_PrmC protein- 96.7 0.013 2.8E-07 39.6 7.5 47 26-102 197-243 (251)
88 COG4106 Tam Trans-aconitate me 96.6 0.0095 2.1E-07 40.2 6.1 100 7-112 92-203 (257)
89 PRK09489 rsmC 16S ribosomal RN 96.5 0.0089 1.9E-07 42.8 5.6 40 8-47 262-304 (342)
90 PF05724 TPMT: Thiopurine S-me 96.4 0.0096 2.1E-07 40.1 5.2 72 8-99 117-189 (218)
91 PRK15001 SAM-dependent 23S rib 96.4 0.011 2.4E-07 43.0 5.7 40 7-46 298-340 (378)
92 KOG1975 mRNA cap methyltransfe 96.2 0.0089 1.9E-07 42.6 4.3 39 6-44 195-235 (389)
93 TIGR02469 CbiT precorrin-6Y C5 96.2 0.0073 1.6E-07 36.1 3.5 34 7-45 88-121 (124)
94 PRK11188 rrmJ 23S rRNA methylt 96.2 0.018 3.9E-07 38.4 5.4 40 8-47 118-166 (209)
95 PRK09328 N5-glutamine S-adenos 96.1 0.1 2.2E-06 35.8 9.0 57 25-111 217-274 (275)
96 COG4976 Predicted methyltransf 96.0 0.067 1.5E-06 36.6 7.5 91 8-114 189-287 (287)
97 PF07021 MetW: Methionine bios 96.0 0.1 2.3E-06 34.5 8.1 91 5-104 71-171 (193)
98 PF06859 Bin3: Bicoid-interact 95.9 0.0022 4.8E-08 38.5 0.1 86 8-101 2-93 (110)
99 PF07109 Mg-por_mtran_C: Magne 95.8 0.05 1.1E-06 32.0 5.6 84 15-106 3-88 (97)
100 PF05175 MTS: Methyltransferas 95.7 0.021 4.5E-07 36.7 4.0 45 2-46 91-140 (170)
101 PF03291 Pox_MCEL: mRNA cappin 95.6 0.013 2.8E-07 41.8 3.2 40 8-47 146-187 (331)
102 TIGR00138 gidB 16S rRNA methyl 95.6 0.016 3.5E-07 37.8 3.3 33 7-45 109-141 (181)
103 TIGR03439 methyl_EasF probable 95.5 0.036 7.8E-07 39.5 4.9 36 9-44 159-195 (319)
104 TIGR00027 mthyl_TIGR00027 meth 95.4 0.13 2.9E-06 35.5 7.5 88 9-98 160-248 (260)
105 COG2813 RsmC 16S RNA G1207 met 95.3 0.42 9.1E-06 33.8 9.6 79 2-113 218-300 (300)
106 PRK00121 trmB tRNA (guanine-N( 95.2 0.029 6.4E-07 37.1 3.6 39 8-46 112-156 (202)
107 PF11899 DUF3419: Protein of u 95.0 0.04 8.7E-07 40.1 4.0 43 8-50 296-338 (380)
108 PF09243 Rsm22: Mitochondrial 95.0 0.056 1.2E-06 37.6 4.5 45 4-50 99-143 (274)
109 PRK00107 gidB 16S rRNA methylt 94.9 0.055 1.2E-06 35.6 4.1 34 7-46 112-145 (187)
110 COG5459 Predicted rRNA methyla 94.9 0.025 5.4E-07 40.9 2.6 47 4-50 179-229 (484)
111 KOG1331 Predicted methyltransf 94.8 0.03 6.5E-07 39.1 2.7 40 8-47 104-144 (293)
112 PF07942 N2227: N2227-like pro 94.4 0.59 1.3E-05 32.6 8.5 76 8-100 166-242 (270)
113 PRK13944 protein-L-isoaspartat 94.3 0.072 1.6E-06 35.3 3.8 30 8-45 143-172 (205)
114 PF03141 Methyltransf_29: Puta 94.3 0.042 9.2E-07 41.2 2.8 46 2-47 421-468 (506)
115 TIGR00438 rrmJ cell division p 94.3 0.062 1.4E-06 35.0 3.4 38 8-45 99-145 (188)
116 COG3315 O-Methyltransferase in 94.2 0.33 7.1E-06 34.3 6.9 88 9-98 172-262 (297)
117 PRK00377 cbiT cobalt-precorrin 94.1 0.11 2.4E-06 34.1 4.2 33 7-44 111-143 (198)
118 TIGR00563 rsmB ribosomal RNA s 94.0 0.16 3.5E-06 37.4 5.3 44 8-51 310-373 (426)
119 TIGR00406 prmA ribosomal prote 93.7 0.11 2.3E-06 36.3 3.8 35 8-47 226-260 (288)
120 TIGR00091 tRNA (guanine-N(7)-) 93.3 0.12 2.6E-06 33.9 3.3 21 26-46 112-132 (194)
121 TIGR00417 speE spermidine synt 92.9 0.2 4.3E-06 34.7 4.1 38 8-45 146-185 (270)
122 PRK13942 protein-L-isoaspartat 92.8 0.18 3.8E-06 33.7 3.6 31 8-46 146-176 (212)
123 PF13659 Methyltransf_26: Meth 92.5 0.14 3.1E-06 30.2 2.7 40 7-46 70-115 (117)
124 COG2242 CobL Precorrin-6B meth 92.3 0.31 6.7E-06 32.1 4.1 37 4-46 99-135 (187)
125 KOG3010 Methyltransferase [Gen 92.3 0.15 3.2E-06 35.1 2.7 37 8-47 101-138 (261)
126 PRK14967 putative methyltransf 92.1 0.5 1.1E-05 31.6 5.2 23 25-47 138-160 (223)
127 PRK00811 spermidine synthase; 92.0 0.45 9.7E-06 33.2 5.0 38 8-45 151-190 (283)
128 PRK11088 rrmA 23S rRNA methylt 91.9 0.2 4.3E-06 34.6 3.1 31 8-47 152-182 (272)
129 PRK00312 pcm protein-L-isoaspa 91.6 0.39 8.6E-06 31.8 4.2 31 8-46 145-175 (212)
130 COG2521 Predicted archaeal met 91.5 1.4 3.1E-05 30.4 6.7 57 25-103 224-280 (287)
131 cd01842 SGNH_hydrolase_like_5 91.2 0.53 1.2E-05 30.9 4.3 37 9-45 52-98 (183)
132 PHA03411 putative methyltransf 91.2 1.2 2.6E-05 31.3 6.3 65 8-95 127-209 (279)
133 TIGR00080 pimt protein-L-isoas 91.1 0.49 1.1E-05 31.5 4.2 31 7-45 146-176 (215)
134 PRK14901 16S rRNA methyltransf 91.0 0.54 1.2E-05 34.8 4.8 27 25-51 363-389 (434)
135 KOG1269 SAM-dependent methyltr 90.9 0.26 5.7E-06 35.8 3.0 42 8-51 179-220 (364)
136 COG0275 Predicted S-adenosylme 90.8 0.29 6.2E-06 34.7 2.9 30 23-52 221-250 (314)
137 PRK04457 spermidine synthase; 90.7 0.45 9.8E-06 32.9 3.9 37 8-45 137-176 (262)
138 PRK14121 tRNA (guanine-N(7)-)- 90.6 0.53 1.1E-05 34.6 4.3 42 4-46 187-235 (390)
139 PF03141 Methyltransf_29: Puta 90.6 0.088 1.9E-06 39.5 0.3 44 4-48 176-221 (506)
140 COG0500 SmtA SAM-dependent met 90.3 0.83 1.8E-05 27.0 4.5 41 8-51 120-160 (257)
141 PF10294 Methyltransf_16: Puta 90.0 0.69 1.5E-05 29.9 4.1 39 8-48 120-158 (173)
142 COG4123 Predicted O-methyltran 89.9 2.3 5.1E-05 29.3 6.8 59 25-113 149-213 (248)
143 TIGR00006 S-adenosyl-methyltra 89.8 0.56 1.2E-05 33.3 3.8 30 23-52 217-246 (305)
144 KOG2940 Predicted methyltransf 89.8 0.24 5.2E-06 34.1 1.8 82 8-98 138-225 (325)
145 PF06325 PrmA: Ribosomal prote 89.6 1.3 2.8E-05 31.3 5.5 70 8-113 226-295 (295)
146 PRK14904 16S rRNA methyltransf 89.6 0.91 2E-05 33.7 5.0 26 26-51 357-382 (445)
147 PF08123 DOT1: Histone methyla 89.4 0.57 1.2E-05 31.3 3.4 44 6-52 121-164 (205)
148 PRK07402 precorrin-6B methylas 89.4 0.63 1.4E-05 30.4 3.6 23 25-47 121-143 (196)
149 TIGR00536 hemK_fam HemK family 89.3 1.2 2.7E-05 30.9 5.2 21 24-44 222-242 (284)
150 TIGR01177 conserved hypothetic 89.1 1 2.2E-05 32.0 4.8 39 8-46 249-294 (329)
151 KOG2798 Putative trehalase [Ca 89.1 4.8 0.0001 29.1 7.8 79 8-101 260-338 (369)
152 PF03269 DUF268: Caenorhabditi 89.0 2.4 5.2E-05 27.6 5.8 24 26-49 91-114 (177)
153 COG4301 Uncharacterized conser 88.5 1.3 2.7E-05 30.9 4.6 36 9-44 156-191 (321)
154 PRK00050 16S rRNA m(4)C1402 me 88.4 0.82 1.8E-05 32.3 3.8 30 23-52 213-242 (296)
155 PLN02781 Probable caffeoyl-CoA 88.2 1.7 3.6E-05 29.5 5.1 36 7-47 144-179 (234)
156 PRK01581 speE spermidine synth 87.8 1.4 3.1E-05 32.1 4.8 38 8-45 227-267 (374)
157 PF03059 NAS: Nicotianamine sy 87.7 0.91 2E-05 31.8 3.7 80 7-114 192-273 (276)
158 PLN02366 spermidine synthase 87.3 1.6 3.6E-05 31.0 4.8 38 8-45 166-205 (308)
159 KOG2539 Mitochondrial/chloropl 86.2 1.4 3.1E-05 33.1 4.1 41 8-48 275-317 (491)
160 PF10017 Methyltransf_33: Hist 86.2 1.8 3.9E-05 26.6 4.1 28 76-103 93-120 (127)
161 COG3963 Phospholipid N-methylt 85.6 3.9 8.4E-05 26.9 5.4 42 7-48 117-158 (194)
162 PRK10901 16S rRNA methyltransf 84.8 1.5 3.3E-05 32.4 3.8 25 26-50 352-376 (427)
163 PF01795 Methyltransf_5: MraW 84.2 0.7 1.5E-05 32.9 1.7 30 23-52 218-247 (310)
164 PRK03612 spermidine synthase; 84.2 2.1 4.6E-05 32.5 4.4 40 7-46 373-415 (521)
165 TIGR00446 nop2p NOL1/NOP2/sun 83.8 2 4.3E-05 29.6 3.8 25 26-50 179-203 (264)
166 PRK14966 unknown domain/N5-glu 83.7 15 0.00032 27.6 8.3 58 25-112 360-418 (423)
167 COG2264 PrmA Ribosomal protein 83.3 11 0.00024 26.8 7.3 62 8-103 230-291 (300)
168 COG2519 GCD14 tRNA(1-methylade 83.2 1.7 3.7E-05 30.1 3.2 31 18-50 169-199 (256)
169 PF08002 DUF1697: Protein of u 80.7 5.6 0.00012 24.8 4.7 36 73-109 12-48 (137)
170 PF03574 Peptidase_S48: Peptid 79.6 1.8 3.8E-05 26.7 2.1 31 14-44 11-41 (149)
171 PRK14902 16S rRNA methyltransf 79.6 2.5 5.4E-05 31.4 3.3 24 26-49 359-382 (444)
172 PRK11524 putative methyltransf 79.5 2.7 5.9E-05 29.3 3.3 20 26-45 60-79 (284)
173 PLN02476 O-methyltransferase 79.3 19 0.00042 25.3 8.0 36 8-48 195-230 (278)
174 PRK14903 16S rRNA methyltransf 79.1 3.3 7.2E-05 30.8 3.8 26 26-51 346-371 (431)
175 PRK13699 putative methylase; P 79.0 2.6 5.5E-05 28.6 3.0 20 25-44 51-70 (227)
176 PF05430 Methyltransf_30: S-ad 78.7 4.7 0.0001 24.7 3.8 33 81-113 92-124 (124)
177 PF01555 N6_N4_Mtase: DNA meth 78.2 1.5 3.3E-05 28.7 1.7 21 25-45 35-55 (231)
178 TIGR03533 L3_gln_methyl protei 78.1 3.3 7.2E-05 28.9 3.4 20 25-44 230-249 (284)
179 PRK11805 N5-glutamine S-adenos 77.9 3.4 7.4E-05 29.3 3.4 20 25-44 242-261 (307)
180 COG2518 Pcm Protein-L-isoaspar 75.8 6.8 0.00015 26.4 4.2 32 8-47 139-170 (209)
181 PRK11933 yebU rRNA (cytosine-C 75.4 3.1 6.6E-05 31.4 2.7 23 26-48 222-244 (470)
182 PF06962 rRNA_methylase: Putat 74.7 2.4 5.3E-05 26.7 1.8 25 23-47 69-93 (140)
183 TIGR03704 PrmC_rel_meth putati 74.1 5.8 0.00013 27.2 3.7 20 26-45 196-215 (251)
184 PRK13943 protein-L-isoaspartat 73.9 4.1 8.9E-05 29.2 3.0 31 8-46 150-180 (322)
185 PF13578 Methyltransf_24: Meth 72.6 2.6 5.6E-05 24.5 1.5 37 8-47 70-106 (106)
186 KOG2198 tRNA cytosine-5-methyl 72.3 5.3 0.00012 29.2 3.2 28 25-52 275-302 (375)
187 PF08468 MTS_N: Methyltransfer 72.0 7.6 0.00016 24.8 3.6 35 8-47 70-106 (155)
188 KOG0780 Signal recognition par 71.3 36 0.00079 25.5 7.2 44 8-51 184-227 (483)
189 PF08845 SymE_toxin: Toxin Sym 70.3 4 8.7E-05 21.6 1.7 13 86-98 31-43 (57)
190 COG0144 Sun tRNA and rRNA cyto 69.9 7.1 0.00015 28.3 3.5 27 25-51 267-293 (355)
191 PLN02672 methionine S-methyltr 69.5 22 0.00048 29.9 6.4 20 25-44 257-276 (1082)
192 COG3897 Predicted methyltransf 69.4 8.9 0.00019 25.8 3.5 39 6-47 141-180 (218)
193 PRK15001 SAM-dependent 23S rib 68.6 22 0.00049 26.1 5.8 44 3-49 101-145 (378)
194 PF13592 HTH_33: Winged helix- 67.8 5.1 0.00011 21.1 1.9 26 76-101 19-44 (60)
195 COG0503 Apt Adenine/guanine ph 67.7 20 0.00044 23.3 5.0 21 80-100 131-151 (179)
196 KOG2918 Carboxymethyl transfer 67.1 24 0.00052 25.5 5.5 85 10-101 191-278 (335)
197 PF00919 UPF0004: Uncharacteri 66.9 23 0.0005 20.7 4.8 46 6-51 35-81 (98)
198 COG4353 Uncharacterized conser 66.8 25 0.00054 22.9 5.0 61 25-102 72-132 (192)
199 PF07927 YcfA: YcfA-like prote 66.5 8.1 0.00018 19.7 2.5 17 82-98 2-18 (56)
200 PF14740 DUF4471: Domain of un 66.0 6.3 0.00014 27.9 2.5 60 9-97 224-286 (289)
201 TIGR03439 methyl_EasF probable 65.6 13 0.00029 26.6 4.1 30 74-103 283-312 (319)
202 COG4122 Predicted O-methyltran 64.8 11 0.00024 25.5 3.4 39 7-50 132-170 (219)
203 KOG3987 Uncharacterized conser 64.8 4.1 8.8E-05 27.8 1.3 82 8-100 170-260 (288)
204 PF01206 TusA: Sulfurtransfera 64.3 19 0.0004 19.2 3.8 27 81-107 40-66 (70)
205 PRK09489 rsmC 16S ribosomal RN 64.2 13 0.00029 26.8 4.0 36 8-48 77-114 (342)
206 PRK00536 speE spermidine synth 63.7 8.1 0.00017 26.9 2.7 33 7-46 139-171 (262)
207 KOG2352 Predicted spermine/spe 63.6 10 0.00022 28.8 3.2 45 8-52 115-169 (482)
208 PF01269 Fibrillarin: Fibrilla 62.3 29 0.00063 23.8 5.0 80 8-113 144-228 (229)
209 COG5379 BtaA S-adenosylmethion 62.3 20 0.00043 25.9 4.4 42 6-47 326-367 (414)
210 PF01135 PCMT: Protein-L-isoas 61.6 5.5 0.00012 26.7 1.5 31 8-46 142-172 (209)
211 PF02390 Methyltransf_4: Putat 60.9 4.9 0.00011 26.5 1.2 21 26-46 113-133 (195)
212 COG0220 Predicted S-adenosylme 60.0 13 0.00029 25.3 3.1 21 26-46 144-164 (227)
213 cd04911 ACT_AKiii-YclM-BS_1 AC 58.1 21 0.00045 20.0 3.2 37 2-40 32-71 (76)
214 cd01093 CRIB_PAK_like PAK (p21 57.6 6.5 0.00014 19.7 1.0 17 81-97 28-44 (46)
215 PF10006 DUF2249: Uncharacteri 57.0 24 0.00052 18.9 3.3 27 21-47 8-34 (69)
216 PF07090 DUF1355: Protein of u 56.9 8.1 0.00018 25.3 1.7 40 4-46 64-108 (177)
217 PF06557 DUF1122: Protein of u 56.8 17 0.00037 23.6 3.0 60 25-101 65-124 (170)
218 PRK01544 bifunctional N5-gluta 56.2 13 0.00028 28.3 2.9 20 25-44 248-267 (506)
219 PRK06132 hypothetical protein; 54.9 14 0.00031 27.0 2.7 23 27-49 322-344 (359)
220 PF09822 ABC_transp_aux: ABC-t 54.9 28 0.0006 23.9 4.1 39 3-45 192-231 (271)
221 PRK10556 hypothetical protein; 54.6 18 0.0004 21.3 2.7 22 80-101 4-25 (111)
222 KOG1661 Protein-L-isoaspartate 54.5 8.5 0.00018 26.2 1.5 29 8-44 163-191 (237)
223 smart00874 B5 tRNA synthetase 54.0 19 0.00042 19.2 2.7 22 75-96 15-36 (71)
224 PF01316 Arg_repressor: Argini 53.0 9.9 0.00022 20.9 1.4 19 78-96 19-37 (70)
225 PF03484 B5: tRNA synthetase B 52.9 18 0.00039 19.6 2.4 23 76-98 16-38 (70)
226 PLN02823 spermine synthase 52.8 19 0.0004 26.1 3.1 20 26-45 199-219 (336)
227 PF14814 UB2H: Bifunctional tr 52.6 12 0.00027 21.2 1.8 29 75-103 3-31 (85)
228 cd03421 SirA_like_N SirA_like_ 52.0 35 0.00077 18.0 4.4 22 81-103 38-59 (67)
229 PF10354 DUF2431: Domain of un 51.8 26 0.00056 22.6 3.4 21 26-46 105-125 (166)
230 PF08704 GCD14: tRNA methyltra 51.5 4.2 9E-05 28.1 -0.4 34 8-48 114-148 (247)
231 cd00291 SirA_YedF_YeeD SirA, Y 51.1 36 0.00079 17.9 3.9 24 80-103 38-61 (69)
232 COG0421 SpeE Spermidine syntha 51.1 22 0.00047 25.1 3.1 20 26-45 170-189 (282)
233 TIGR02764 spore_ybaN_pdaB poly 50.9 18 0.0004 23.3 2.6 57 18-98 131-187 (191)
234 PF05763 DUF835: Protein of un 50.8 30 0.00065 21.6 3.4 39 9-47 42-83 (136)
235 PRK13245 hetR heterocyst diffe 50.5 8.3 0.00018 26.4 0.9 31 12-42 62-92 (299)
236 PF11312 DUF3115: Protein of u 50.3 27 0.00059 25.1 3.5 26 22-47 218-243 (315)
237 COG1743 Adenine-specific DNA m 50.3 54 0.0012 26.8 5.4 23 25-47 567-589 (875)
238 PF06968 BATS: Biotin and Thia 50.2 28 0.0006 20.0 3.1 75 18-94 17-92 (93)
239 PF02636 Methyltransf_28: Puta 50.1 28 0.00061 23.7 3.5 26 24-49 172-197 (252)
240 COG2813 RsmC 16S RNA G1207 met 50.1 32 0.0007 24.6 3.8 37 8-47 38-74 (300)
241 PF01564 Spermine_synth: Sperm 49.7 9.6 0.00021 26.1 1.2 40 7-46 150-191 (246)
242 cd03413 CbiK_C Anaerobic cobal 49.6 22 0.00047 21.0 2.6 17 81-97 81-97 (103)
243 PRK04280 arginine repressor; P 49.5 18 0.00038 23.0 2.3 20 78-97 18-37 (148)
244 TIGR01033 DNA-binding regulato 49.5 33 0.00073 23.5 3.8 34 19-52 60-106 (238)
245 KOG3201 Uncharacterized conser 49.2 36 0.00078 22.4 3.6 35 8-44 104-138 (201)
246 PF06283 ThuA: Trehalose utili 49.1 36 0.00077 22.5 3.9 38 5-46 50-88 (217)
247 PF08351 DUF1726: Domain of un 48.6 35 0.00075 19.7 3.3 35 8-47 12-46 (92)
248 PRK13605 endoribonuclease SymE 48.1 26 0.00056 21.2 2.7 27 85-111 44-72 (113)
249 PRK14339 (dimethylallyl)adenos 47.5 49 0.0011 24.5 4.7 42 7-48 27-69 (420)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 47.2 7.9 0.00017 27.1 0.5 26 25-50 194-223 (283)
251 PF14258 DUF4350: Domain of un 47.0 18 0.00039 19.3 1.8 32 10-46 38-70 (70)
252 cd03423 SirA SirA (also known 46.9 46 0.00099 17.8 3.9 25 81-105 39-63 (69)
253 COG4822 CbiK Cobalamin biosynt 46.7 27 0.00059 23.9 2.9 19 79-97 216-234 (265)
254 PF00107 ADH_zinc_N: Zinc-bind 46.6 12 0.00026 22.2 1.2 23 27-49 70-92 (130)
255 COG1795 Formaldehyde-activatin 46.5 16 0.00035 23.4 1.7 29 9-37 107-135 (170)
256 cd03238 ABC_UvrA The excision 46.3 75 0.0016 20.5 4.9 7 40-46 108-114 (176)
257 COG1438 ArgR Arginine represso 46.2 21 0.00045 22.8 2.2 21 77-97 19-39 (150)
258 PF01870 Hjc: Archaeal hollida 45.5 19 0.0004 20.8 1.8 19 81-99 3-21 (88)
259 PRK10858 nitrogen regulatory p 45.5 52 0.0011 19.8 3.8 28 20-47 65-96 (112)
260 PF03698 UPF0180: Uncharacteri 45.2 25 0.00054 20.0 2.2 24 78-101 7-30 (80)
261 PF11305 DUF3107: Protein of u 45.2 28 0.0006 19.5 2.4 24 24-47 21-45 (74)
262 PLN02589 caffeoyl-CoA O-methyl 45.0 38 0.00082 23.4 3.5 35 8-48 157-191 (247)
263 PF01436 NHL: NHL repeat; Int 44.7 14 0.00031 16.1 1.0 11 37-47 10-20 (28)
264 cd02413 40S_S3_KH K homology R 44.4 58 0.0013 18.3 4.7 29 81-109 8-36 (81)
265 COG1092 Predicted SAM-dependen 44.4 41 0.00088 25.0 3.8 25 24-48 314-338 (393)
266 COG1724 Predicted RNA binding 44.2 40 0.00088 18.4 2.8 21 79-99 7-27 (66)
267 PF15585 Imm46: Immunity prote 44.1 61 0.0013 20.2 3.9 37 10-47 52-93 (129)
268 PF13319 DUF4090: Protein of u 43.6 29 0.00062 19.6 2.2 28 74-101 54-81 (84)
269 PRK00110 hypothetical protein; 43.4 52 0.0011 22.8 4.0 34 19-52 60-106 (245)
270 COG1888 Uncharacterized protei 43.4 38 0.00081 19.8 2.8 41 74-114 55-95 (97)
271 cd03422 YedF YedF is a bacteri 43.2 54 0.0012 17.6 3.9 23 81-103 39-61 (69)
272 KOG0964 Structural maintenance 43.1 25 0.00055 29.3 2.7 23 75-97 112-134 (1200)
273 cd08283 FDH_like_1 Glutathione 42.7 33 0.00071 24.8 3.1 22 26-47 286-307 (386)
274 PRK09213 pur operon repressor; 42.3 93 0.002 21.9 5.1 19 34-52 191-209 (271)
275 PRK06852 aldolase; Validated 42.2 28 0.0006 24.9 2.5 29 19-47 10-38 (304)
276 PF13670 PepSY_2: Peptidase pr 40.8 65 0.0014 17.8 5.5 34 78-111 28-61 (83)
277 PRK12378 hypothetical protein; 40.8 25 0.00053 24.2 2.1 34 19-52 58-103 (235)
278 TIGR00478 tly hemolysin TlyA f 40.8 1.2E+02 0.0025 20.7 6.0 70 6-101 142-218 (228)
279 PRK15128 23S rRNA m(5)C1962 me 40.5 38 0.00083 25.0 3.2 23 25-47 318-340 (396)
280 cd03143 A4_beta-galactosidase_ 40.3 66 0.0014 19.9 3.9 36 5-45 51-86 (154)
281 COG4301 Uncharacterized conser 40.3 22 0.00049 25.0 1.8 39 73-111 281-320 (321)
282 PF05711 TylF: Macrocin-O-meth 40.3 12 0.00026 25.9 0.5 25 25-49 191-215 (248)
283 cd01414 SAICAR_synt_Sc non-met 40.0 98 0.0021 21.9 5.0 49 39-96 202-251 (279)
284 COG1041 Predicted DNA modifica 39.3 50 0.0011 24.1 3.5 26 22-47 286-311 (347)
285 PF09400 DUF2002: Protein of u 39.2 26 0.00057 20.9 1.7 21 80-100 4-24 (111)
286 cd03420 SirA_RHOD_Pry_redox Si 39.2 64 0.0014 17.3 3.9 24 81-104 39-62 (69)
287 PRK04140 hypothetical protein; 39.0 54 0.0012 23.6 3.6 29 80-108 5-34 (317)
288 PRK13510 sulfur transfer compl 38.9 31 0.00067 20.1 2.0 30 17-46 2-31 (95)
289 PRK05225 ketol-acid reductoiso 38.6 42 0.00092 25.6 3.1 38 5-47 95-132 (487)
290 COG0217 Uncharacterized conser 38.4 45 0.00098 23.0 3.0 79 19-99 60-167 (241)
291 PF01709 Transcrip_reg: Transc 38.4 8.3 0.00018 26.4 -0.5 20 78-97 142-161 (234)
292 PRK11018 hypothetical protein; 38.3 72 0.0016 17.6 4.2 23 81-103 48-70 (78)
293 PF04816 DUF633: Family of unk 38.3 83 0.0018 21.0 4.3 34 80-113 104-140 (205)
294 PF09827 CRISPR_Cas2: CRISPR a 38.1 70 0.0015 17.4 4.0 29 19-47 38-67 (78)
295 CHL00123 rps6 ribosomal protei 38.0 83 0.0018 18.3 5.0 43 4-48 4-47 (97)
296 PF10672 Methyltrans_SAM: S-ad 37.9 20 0.00043 25.3 1.3 24 24-47 216-239 (286)
297 TIGR02873 spore_ylxY probable 37.9 33 0.00071 23.9 2.4 54 18-98 210-263 (268)
298 PRK05066 arginine repressor; P 37.6 26 0.00057 22.4 1.7 18 77-94 22-39 (156)
299 PRK01544 bifunctional N5-gluta 37.4 45 0.00098 25.5 3.2 20 26-45 442-461 (506)
300 PF03434 DUF276: DUF276 ; Int 37.2 40 0.00086 23.4 2.6 23 21-43 53-75 (291)
301 COG4421 Capsular polysaccharid 36.9 31 0.00068 25.1 2.2 24 79-102 241-264 (368)
302 PF15072 DUF4539: Domain of un 36.9 30 0.00066 19.8 1.8 22 26-47 38-59 (86)
303 PF11590 DNAPolymera_Pol: DNA 36.6 39 0.00084 16.5 1.8 16 82-97 1-16 (41)
304 COG0541 Ffh Signal recognition 36.5 98 0.0021 23.5 4.7 44 9-52 184-227 (451)
305 COG1889 NOP1 Fibrillarin-like 36.5 1.4E+02 0.003 20.4 8.9 70 22-113 156-230 (231)
306 PRK11783 rlmL 23S rRNA m(2)G24 36.4 56 0.0012 26.1 3.7 21 25-45 635-655 (702)
307 COG3288 PntA NAD/NADP transhyd 36.0 57 0.0012 23.7 3.3 38 4-43 241-278 (356)
308 PRK10665 nitrogen regulatory p 36.0 89 0.0019 18.8 3.8 28 20-47 65-96 (112)
309 TIGR01743 purR_Bsub pur operon 35.9 1.1E+02 0.0024 21.5 4.7 19 34-52 189-207 (268)
310 PRK03094 hypothetical protein; 35.9 48 0.001 18.8 2.4 24 77-100 6-29 (80)
311 KOG3924 Putative protein methy 35.9 74 0.0016 23.8 3.9 43 6-51 271-313 (419)
312 PF08373 RAP: RAP domain; Int 35.8 40 0.00087 17.1 2.0 16 84-99 23-38 (58)
313 TIGR03473 HpnK hopanoid biosyn 35.7 93 0.002 21.8 4.4 62 27-97 215-277 (283)
314 PF15603 Imm45: Immunity prote 35.5 82 0.0018 17.9 3.4 39 8-46 35-82 (82)
315 PF06897 DUF1269: Protein of u 35.4 69 0.0015 18.9 3.2 21 27-47 43-63 (102)
316 PF03793 PASTA: PASTA domain; 35.3 68 0.0015 16.5 3.1 22 78-99 8-29 (63)
317 PF00543 P-II: Nitrogen regula 35.0 40 0.00087 19.6 2.2 28 20-47 62-93 (102)
318 KOG1709 Guanidinoacetate methy 34.7 47 0.001 22.9 2.6 26 23-48 183-208 (271)
319 TIGR03675 arCOG00543 arCOG0054 34.4 97 0.0021 24.6 4.6 43 5-47 362-410 (630)
320 PF02479 Herpes_IE68: Herpesvi 34.4 36 0.00079 21.2 1.9 29 62-92 62-90 (132)
321 PF07685 GATase_3: CobB/CobQ-l 34.0 32 0.00069 21.7 1.7 37 5-41 5-44 (158)
322 PF01596 Methyltransf_3: O-met 33.9 23 0.0005 23.6 1.1 38 7-49 121-158 (205)
323 KOG1271 Methyltransferases [Ge 33.8 47 0.001 22.4 2.4 65 8-102 137-207 (227)
324 COG3019 Predicted metal-bindin 33.8 52 0.0011 20.9 2.5 18 82-99 40-57 (149)
325 PF10281 Ish1: Putative stress 33.7 54 0.0012 15.4 2.1 18 79-96 4-21 (38)
326 PF05762 VWA_CoxE: VWA domain 33.6 1.4E+02 0.0031 19.9 4.9 40 6-48 149-188 (222)
327 PF05772 NinB: NinB protein; 33.6 82 0.0018 19.5 3.4 28 73-101 55-87 (127)
328 PF02492 cobW: CobW/HypB/UreG, 33.5 47 0.001 21.3 2.5 37 6-43 141-177 (178)
329 PF02153 PDH: Prephenate dehyd 33.4 1.6E+02 0.0035 20.2 5.4 17 82-98 140-156 (258)
330 PRK08558 adenine phosphoribosy 33.3 93 0.002 21.3 4.0 65 34-99 171-235 (238)
331 PF06200 tify: tify domain; I 33.1 47 0.001 15.8 1.8 18 15-32 17-34 (36)
332 COG4004 Uncharacterized protei 32.6 1.1E+02 0.0023 17.9 4.4 38 75-112 8-49 (96)
333 cd03067 PDI_b_PDIR_N PDIb fami 32.5 1.2E+02 0.0025 18.3 3.9 27 23-49 34-60 (112)
334 PRK15450 signal transduction p 32.5 32 0.00069 19.6 1.3 18 75-92 68-85 (85)
335 PF11455 DUF3018: Protein of 32.3 62 0.0013 17.6 2.4 19 81-99 5-23 (65)
336 cd03142 GATase1_ThuA Type 1 gl 32.3 86 0.0019 21.2 3.6 39 5-47 56-96 (215)
337 PF09673 TrbC_Ftype: Type-F co 32.2 1.1E+02 0.0024 18.3 3.8 25 20-47 8-32 (113)
338 PRK09662 GspL-like protein; Pr 31.8 44 0.00095 23.7 2.2 21 81-101 7-27 (286)
339 PF08532 Glyco_hydro_42M: Beta 31.6 65 0.0014 21.2 3.0 36 5-45 55-90 (207)
340 PLN03155 cytochrome c oxidase 31.5 54 0.0012 17.6 2.0 27 15-44 34-60 (63)
341 TIGR00959 ffh signal recogniti 31.1 1.4E+02 0.0031 22.4 4.9 42 8-49 183-224 (428)
342 PF01728 FtsJ: FtsJ-like methy 30.7 53 0.0012 20.9 2.4 23 25-47 118-140 (181)
343 KOG1663 O-methyltransferase [S 30.6 1.1E+02 0.0024 21.1 3.9 29 23-51 160-188 (237)
344 PF06135 DUF965: Bacterial pro 30.6 35 0.00075 19.3 1.3 20 22-41 14-33 (79)
345 PF01536 SAM_decarbox: Adenosy 30.6 1.2E+02 0.0025 22.1 4.2 29 75-103 29-57 (331)
346 PRK15469 ghrA bifunctional gly 30.3 1.1E+02 0.0024 21.8 4.1 35 6-44 189-224 (312)
347 PF00724 Oxidored_FMN: NADH:fl 30.2 2.1E+02 0.0046 20.6 5.7 82 22-103 75-173 (341)
348 PF08714 Fae: Formaldehyde-act 30.0 53 0.0012 21.2 2.2 27 9-35 103-129 (159)
349 TIGR03709 PPK2_rel_1 polyphosp 30.0 72 0.0016 22.3 3.0 68 25-99 99-166 (264)
350 KOG2698 GTP cyclohydrolase I [ 29.9 87 0.0019 21.3 3.2 21 27-47 184-204 (247)
351 PF07862 Nif11: Nitrogen fixat 29.9 70 0.0015 15.8 2.3 19 78-96 26-44 (49)
352 PRK05473 hypothetical protein; 29.8 47 0.001 19.1 1.7 21 21-41 16-36 (86)
353 PTZ00311 phosphoenolpyruvate c 29.7 1.8E+02 0.0039 22.9 5.2 47 9-55 97-143 (561)
354 COG1064 AdhP Zn-dependent alco 29.5 1.2E+02 0.0026 22.1 4.1 22 27-48 240-261 (339)
355 TIGR00150 HI0065_YjeE ATPase, 29.3 1.4E+02 0.003 18.5 4.0 26 21-46 4-29 (133)
356 PF13399 LytR_C: LytR cell env 28.9 64 0.0014 18.0 2.3 23 78-100 15-37 (90)
357 PF10087 DUF2325: Uncharacteri 28.9 86 0.0019 17.9 2.9 25 74-98 5-29 (97)
358 PRK00453 rpsF 30S ribosomal pr 28.9 1.3E+02 0.0028 17.7 4.4 40 6-47 2-42 (108)
359 COG2326 Uncharacterized conser 28.8 82 0.0018 22.2 3.1 65 25-99 117-184 (270)
360 PF13580 SIS_2: SIS domain; PD 28.7 59 0.0013 19.9 2.3 27 21-47 17-43 (138)
361 COG0686 Ald Alanine dehydrogen 28.5 56 0.0012 23.8 2.3 36 5-43 229-265 (371)
362 cd08258 Zn_ADH4 Alcohol dehydr 28.4 1.6E+02 0.0034 20.4 4.6 22 27-48 245-266 (306)
363 PF03514 GRAS: GRAS domain fam 28.2 40 0.00086 24.7 1.6 20 80-99 311-330 (374)
364 COG1245 Predicted ATPase, RNas 28.1 1.8E+02 0.0039 22.7 4.9 41 7-47 231-271 (591)
365 PF10726 DUF2518: Protein of f 28.1 84 0.0018 20.0 2.8 33 9-42 81-113 (145)
366 PF09382 RQC: RQC domain; Int 27.8 34 0.00074 19.8 1.0 66 23-94 4-72 (106)
367 PF05185 PRMT5: PRMT5 arginine 27.7 29 0.00063 26.1 0.8 36 7-43 258-294 (448)
368 PRK13587 1-(5-phosphoribosyl)- 27.7 1.6E+02 0.0035 20.0 4.4 24 74-98 197-220 (234)
369 cd04882 ACT_Bt0572_2 C-termina 27.6 64 0.0014 16.3 2.0 15 81-95 50-64 (65)
370 cd08237 ribitol-5-phosphate_DH 27.6 78 0.0017 22.4 3.0 21 27-47 237-257 (341)
371 cd02931 ER_like_FMN Enoate red 27.6 2.5E+02 0.0054 20.6 6.6 29 20-48 76-104 (382)
372 TIGR03707 PPK2_P_aer polyphosp 27.6 64 0.0014 22.1 2.4 68 25-99 74-141 (230)
373 PF08671 SinI: Anti-repressor 27.6 50 0.0011 15.0 1.3 10 82-91 3-12 (30)
374 TIGR03126 one_C_fae formaldehy 27.4 55 0.0012 21.1 1.9 27 9-35 105-131 (160)
375 COG3581 Uncharacterized protei 27.4 65 0.0014 24.1 2.5 22 81-102 90-111 (420)
376 PRK10628 LigB family dioxygena 27.3 1.4E+02 0.003 20.7 4.0 42 5-47 106-148 (246)
377 PRK07680 late competence prote 27.3 1.5E+02 0.0033 20.3 4.3 30 7-41 62-91 (273)
378 PRK10309 galactitol-1-phosphat 27.3 71 0.0015 22.5 2.7 22 27-48 241-262 (347)
379 TIGR01202 bchC 2-desacetyl-2-h 27.3 72 0.0016 22.2 2.7 21 27-47 212-232 (308)
380 PRK14862 rimO ribosomal protei 27.2 1.4E+02 0.0031 22.3 4.3 40 7-48 44-83 (440)
381 PF12646 DUF3783: Domain of un 27.1 86 0.0019 16.3 2.4 20 16-35 5-24 (58)
382 COG0523 Putative GTPases (G3E 27.0 88 0.0019 22.5 3.1 41 5-47 144-184 (323)
383 PF13709 DUF4159: Domain of un 26.9 1.1E+02 0.0025 20.4 3.5 25 19-47 66-90 (207)
384 smart00115 CASc Caspase, inter 26.8 1.9E+02 0.004 19.7 4.6 12 37-48 6-17 (241)
385 COG2240 PdxK Pyridoxal/pyridox 26.8 1.8E+02 0.0039 20.7 4.5 45 5-53 71-117 (281)
386 COG0347 GlnK Nitrogen regulato 26.7 1.3E+02 0.0028 18.3 3.3 28 20-47 65-96 (112)
387 COG2103 Predicted sugar phosph 26.6 69 0.0015 22.7 2.4 73 25-98 46-132 (298)
388 PRK01033 imidazole glycerol ph 26.6 1.6E+02 0.0035 20.2 4.3 25 74-98 201-225 (258)
389 COG2890 HemK Methylase of poly 26.6 2.3E+02 0.005 19.8 8.9 59 24-112 216-276 (280)
390 TIGR01744 XPRTase xanthine pho 26.5 2E+02 0.0042 19.0 4.9 67 34-101 112-178 (191)
391 PF00786 PBD: P21-Rho-binding 26.4 54 0.0012 17.1 1.5 18 79-96 25-42 (59)
392 PHA00457 inhibitor of host bac 26.3 92 0.002 16.7 2.3 14 88-101 47-60 (63)
393 cd05007 SIS_Etherase N-acetylm 26.1 86 0.0019 21.6 2.9 24 24-47 34-57 (257)
394 COG3797 Uncharacterized protei 25.8 45 0.00098 21.9 1.3 36 74-110 14-49 (178)
395 PRK09902 hypothetical protein; 25.7 30 0.00066 23.4 0.6 35 17-51 122-163 (216)
396 PF10727 Rossmann-like: Rossma 25.7 1.1E+02 0.0023 18.9 2.9 34 6-45 67-102 (127)
397 KOG1099 SAM-dependent methyltr 25.7 75 0.0016 22.2 2.4 38 7-44 115-161 (294)
398 cd04276 ZnMc_MMP_like_2 Zinc-d 25.5 93 0.002 20.7 2.8 20 79-98 28-47 (197)
399 PRK09219 xanthine phosphoribos 25.5 2E+02 0.0044 18.9 4.6 67 34-101 112-178 (189)
400 PF07647 SAM_2: SAM domain (St 25.2 86 0.0019 16.2 2.2 17 79-95 4-20 (66)
401 PRK09880 L-idonate 5-dehydroge 25.2 84 0.0018 22.2 2.8 21 27-47 247-267 (343)
402 KOG2972 Uncharacterized conser 25.2 81 0.0018 22.1 2.5 18 33-50 114-131 (276)
403 PRK13961 phosphoribosylaminoim 25.2 1.7E+02 0.0038 20.9 4.3 45 38-94 215-263 (296)
404 PF06733 DEAD_2: DEAD_2; Inte 25.1 58 0.0013 20.7 1.8 37 5-47 117-153 (174)
405 PF15496 DUF4646: Domain of un 25.1 1.2E+02 0.0027 18.5 3.2 27 16-42 43-71 (123)
406 PF05046 Img2: Mitochondrial l 25.0 69 0.0015 18.2 1.9 14 80-93 74-87 (87)
407 TIGR02822 adh_fam_2 zinc-bindi 25.0 91 0.002 22.0 2.9 21 27-47 235-255 (329)
408 cd04909 ACT_PDH-BS C-terminal 24.9 75 0.0016 16.5 2.0 16 80-95 54-69 (69)
409 cd04908 ACT_Bt0572_1 N-termina 24.8 79 0.0017 16.4 2.1 16 80-95 49-64 (66)
410 TIGR03366 HpnZ_proposed putati 24.8 94 0.002 21.2 2.9 22 27-48 199-220 (280)
411 PF11599 AviRa: RRNA methyltra 24.7 1.3E+02 0.0028 20.8 3.4 24 23-46 191-214 (246)
412 COG0293 FtsJ 23S rRNA methylas 24.5 93 0.002 21.0 2.7 26 23-48 136-161 (205)
413 COG4273 Uncharacterized conser 24.5 91 0.002 19.4 2.4 23 18-40 109-131 (135)
414 PF08245 Mur_ligase_M: Mur lig 24.5 1.9E+02 0.0041 18.3 4.1 37 9-45 73-114 (188)
415 PF02794 HlyC: RTX toxin acylt 24.3 1.3E+02 0.0028 18.7 3.1 40 11-52 48-91 (133)
416 cd00132 CRIB PAK (p21 activate 24.2 77 0.0017 15.3 1.8 14 81-94 28-41 (42)
417 PRK10867 signal recognition pa 24.2 2.2E+02 0.0047 21.5 4.8 42 8-49 184-225 (433)
418 PRK12480 D-lactate dehydrogena 24.0 1.6E+02 0.0036 21.1 4.1 35 7-44 198-232 (330)
419 KOG3451 Uncharacterized conser 24.0 83 0.0018 17.3 1.9 26 22-47 13-38 (71)
420 COG3870 Uncharacterized protei 23.9 1.6E+02 0.0034 17.6 3.2 26 79-104 11-36 (109)
421 PLN02688 pyrroline-5-carboxyla 23.8 1.8E+02 0.0039 19.7 4.1 31 8-44 62-92 (266)
422 PLN02668 indole-3-acetate carb 23.7 1.3E+02 0.0028 22.4 3.5 21 78-98 286-307 (386)
423 PRK03430 hypothetical protein; 23.7 96 0.0021 20.0 2.5 25 74-98 16-40 (157)
424 PF08484 Methyltransf_14: C-me 23.7 98 0.0021 19.8 2.6 19 26-44 139-157 (160)
425 PRK14755 transcriptional regul 23.7 41 0.00088 14.2 0.6 13 30-42 10-22 (26)
426 PF08952 DUF1866: Domain of un 23.6 45 0.00097 21.2 1.0 26 20-45 7-33 (146)
427 cd04883 ACT_AcuB C-terminal AC 23.6 1E+02 0.0022 16.0 2.4 17 80-96 53-69 (72)
428 PF00334 NDK: Nucleoside dipho 23.5 98 0.0021 18.9 2.5 21 80-100 16-36 (135)
429 PF06258 Mito_fiss_Elm1: Mitoc 23.4 1E+02 0.0023 22.0 2.9 32 16-47 158-190 (311)
430 cd07986 LPLAT_ACT14924-like Ly 23.3 1.1E+02 0.0023 20.2 2.8 21 24-44 83-103 (210)
431 PRK09424 pntA NAD(P) transhydr 23.3 1.7E+02 0.0036 22.7 4.1 39 6-47 247-286 (509)
432 PF09286 Pro-kuma_activ: Pro-k 23.3 1E+02 0.0022 18.9 2.6 21 79-99 62-82 (143)
433 PF06153 DUF970: Protein of un 23.2 1.3E+02 0.0028 18.1 2.9 26 80-105 12-37 (109)
434 PF13405 EF-hand_6: EF-hand do 23.0 78 0.0017 13.7 1.6 16 77-92 15-31 (31)
435 PF00017 SH2: SH2 domain; Int 22.8 1.4E+02 0.003 15.9 3.0 26 19-48 5-30 (77)
436 PF14117 DUF4287: Domain of un 22.8 96 0.0021 16.6 2.1 15 78-92 14-28 (61)
437 PRK14328 (dimethylallyl)adenos 22.8 2.2E+02 0.0048 21.2 4.7 43 6-48 37-82 (439)
438 COG5125 Uncharacterized conser 22.8 2.5E+02 0.0055 19.1 4.4 29 24-52 161-189 (259)
439 PF12780 AAA_8: P-loop contain 22.7 1.2E+02 0.0026 21.2 3.0 70 25-99 16-92 (268)
440 COG3910 Predicted ATPase [Gene 22.5 1.7E+02 0.0036 20.0 3.5 27 20-46 159-185 (233)
441 COG2085 Predicted dinucleotide 22.5 1.1E+02 0.0024 20.8 2.7 32 8-46 61-92 (211)
442 cd08230 glucose_DH Glucose deh 22.4 1.1E+02 0.0023 21.7 2.9 22 27-48 250-271 (355)
443 PF08676 MutL_C: MutL C termin 22.4 1.9E+02 0.0042 17.5 4.3 30 81-113 68-97 (144)
444 COG1060 ThiH Thiamine biosynth 22.4 1.1E+02 0.0024 22.5 3.0 25 77-101 335-359 (370)
445 PRK03341 arginine repressor; P 22.4 61 0.0013 21.0 1.5 18 78-95 29-46 (168)
446 TIGR00497 hsdM type I restrict 22.3 1.7E+02 0.0036 22.4 4.0 36 9-45 319-354 (501)
447 PF12419 DUF3670: SNF2 Helicas 22.3 2.1E+02 0.0045 17.8 5.3 76 20-97 11-101 (141)
448 PRK12557 H(2)-dependent methyl 22.3 2E+02 0.0042 20.9 4.2 34 7-47 81-115 (342)
449 PF00403 HMA: Heavy-metal-asso 22.3 95 0.0021 15.7 2.0 16 79-94 47-62 (62)
450 PRK13543 cytochrome c biogenes 22.3 2.4E+02 0.0051 18.5 4.6 6 41-46 157-162 (214)
451 PRK09347 folE GTP cyclohydrola 22.2 1.6E+02 0.0035 19.5 3.5 23 25-47 124-146 (188)
452 cd00595 NDPk Nucleoside diphos 22.2 1.3E+02 0.0029 18.3 3.0 22 80-101 16-37 (133)
453 PF01250 Ribosomal_S6: Ribosom 22.2 1.1E+02 0.0025 17.1 2.5 28 19-46 12-39 (92)
454 COG1243 ELP3 Histone acetyltra 22.2 3.8E+02 0.0082 20.8 6.5 30 8-37 135-164 (515)
455 PRK09019 translation initiatio 22.0 1.9E+02 0.0042 17.4 6.0 50 20-96 55-104 (108)
456 PRK11727 23S rRNA mA1618 methy 21.9 1.1E+02 0.0023 22.1 2.7 26 76-101 268-293 (321)
457 TIGR00872 gnd_rel 6-phosphoglu 21.9 2.3E+02 0.005 19.8 4.4 28 8-40 60-87 (298)
458 COG4746 Uncharacterized protei 21.8 75 0.0016 17.9 1.5 25 72-96 41-65 (80)
459 PF05706 CDKN3: Cyclin-depende 21.8 96 0.0021 20.3 2.3 22 24-45 118-139 (168)
460 KOG1500 Protein arginine N-met 21.7 1.4E+02 0.003 22.3 3.2 40 4-43 239-279 (517)
461 cd02412 30S_S3_KH K homology R 21.7 1.9E+02 0.0041 17.1 5.1 28 81-108 39-66 (109)
462 cd01919 PEPCK Phosphoenolpyruv 21.6 2.8E+02 0.0061 21.6 5.0 38 16-53 67-104 (515)
463 TIGR03521 GldG gliding-associa 21.5 1.8E+02 0.004 22.5 4.1 35 7-45 234-268 (552)
464 cd03319 L-Ala-DL-Glu_epimerase 21.5 3E+02 0.0065 19.3 5.4 27 75-101 234-260 (316)
465 COG0566 SpoU rRNA methylases [ 21.5 1.1E+02 0.0024 21.2 2.7 23 80-102 171-193 (260)
466 TIGR02819 fdhA_non_GSH formald 21.4 1.1E+02 0.0024 22.4 2.8 22 27-48 280-301 (393)
467 PF02491 SHS2_FTSA: SHS2 domai 21.1 1.3E+02 0.0029 16.4 2.6 27 19-45 20-46 (80)
468 TIGR00530 AGP_acyltrn 1-acyl-s 21.1 1.4E+02 0.003 17.4 2.9 21 24-44 74-94 (130)
469 COG2185 Sbm Methylmalonyl-CoA 21.1 1.1E+02 0.0024 19.4 2.4 22 76-97 24-45 (143)
470 TIGR03451 mycoS_dep_FDH mycoth 21.1 1.1E+02 0.0024 21.7 2.8 21 27-47 257-277 (358)
471 PRK12472 hypothetical protein; 21.0 73 0.0016 24.5 1.8 21 27-47 408-428 (508)
472 PF06180 CbiK: Cobalt chelatas 20.9 43 0.00092 23.4 0.6 17 80-96 221-237 (262)
473 smart00463 SMR Small MutS-rela 20.8 1.3E+02 0.0028 16.3 2.5 30 17-46 6-38 (80)
474 PRK00299 sulfur transfer prote 20.7 1.7E+02 0.0037 16.2 8.1 55 27-111 24-78 (81)
475 COG0279 GmhA Phosphoheptose is 20.7 1.5E+02 0.0033 19.5 3.0 25 23-47 25-49 (176)
476 TIGR00063 folE GTP cyclohydrol 20.7 1.9E+02 0.0041 19.1 3.5 23 25-47 116-138 (180)
477 PRK12570 N-acetylmuramic acid- 20.6 1.3E+02 0.0028 21.3 3.0 23 25-47 44-66 (296)
478 COG1236 YSH1 Predicted exonucl 20.6 1.5E+02 0.0032 22.3 3.3 42 9-50 182-227 (427)
479 COG1759 5-formaminoimidazole-4 20.4 1.5E+02 0.0032 21.8 3.1 87 4-100 57-144 (361)
480 PRK10148 hypothetical protein; 20.3 96 0.0021 19.4 2.1 18 27-44 97-114 (147)
481 TIGR02825 B4_12hDH leukotriene 20.3 1.3E+02 0.0028 20.9 2.9 20 28-47 219-238 (325)
482 PRK13243 glyoxylate reductase; 20.3 1E+02 0.0023 22.1 2.4 36 6-44 203-238 (333)
483 PF10673 DUF2487: Protein of u 20.2 1E+02 0.0023 19.5 2.2 21 81-101 73-93 (142)
484 PHA02126 hypothetical protein 20.2 70 0.0015 19.7 1.3 10 38-47 52-61 (153)
485 PF13344 Hydrolase_6: Haloacid 20.2 1.1E+02 0.0025 17.6 2.3 18 78-95 41-58 (101)
486 smart00562 NDK These are enzym 20.2 1.5E+02 0.0032 18.1 2.9 22 80-101 16-37 (135)
487 TIGR00274 N-acetylmuramic acid 20.0 1.5E+02 0.0033 21.0 3.2 22 25-46 43-64 (291)
488 PF00926 DHBP_synthase: 3,4-di 20.0 66 0.0014 21.4 1.3 19 30-48 2-20 (194)
489 PLN03044 GTP cyclohydrolase I; 20.0 1.9E+02 0.0042 19.2 3.5 23 25-47 122-144 (188)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.92 E-value=9e-25 Score=151.82 Aligned_cols=112 Identities=43% Similarity=0.762 Sum_probs=97.8
Q ss_pred CCCCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC-CCCCchhhhhhhhcchhhhhccCCceec
Q 048707 1 MFVSIPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPV-LPDPSLASKQVIHIDCIMLAHTTGGREM 79 (114)
Q Consensus 1 ~f~~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~r 79 (114)
||...|.+|+|+++++||||+|++|.++|+||+++|+|||.|+|.|.+.++ ...++..+.....+++.|+.++.+|++|
T Consensus 230 mfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 230 MFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred ccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 686699999999999999999999999999999999999999999998885 3222212233556788888778889999
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLK 112 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~ 112 (114)
+.+|++.++.++||.+.++...+..+++|+++|
T Consensus 310 t~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999999875
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.87 E-value=1.2e-22 Score=137.38 Aligned_cols=88 Identities=36% Similarity=0.644 Sum_probs=74.4
Q ss_pred CCCCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCC--CEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCcee
Q 048707 1 MFVSIPKADVIFMKWICHNWSEEACVKILKNCYEALPEN--GKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGRE 78 (114)
Q Consensus 1 ~f~~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pg--G~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 78 (114)
||+++|.+|+|+++++||+|+|++|.+||++++++|+|| |+|+|+|.+.++.+..+........+++.|++ ..+|++
T Consensus 152 ~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~-~~~G~~ 230 (241)
T PF00891_consen 152 FFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV-LTGGKE 230 (241)
T ss_dssp TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH-HHSSS-
T ss_pred HHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH-hcCCCC
Confidence 679999999999999999999999999999999999999 99999999998876554322223578999985 556999
Q ss_pred cCHHHHHHHHH
Q 048707 79 MTEQDFKTLAK 89 (114)
Q Consensus 79 rt~~e~~~ll~ 89 (114)
||.+||++||+
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 99999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.66 E-value=7.1e-16 Score=107.62 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-hcchhhhhccCCceecCH
Q 048707 3 VSIPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVI-HIDCIMLAHTTGGREMTE 81 (114)
Q Consensus 3 ~~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~rt~ 81 (114)
+++|.+|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++.. .+....... .....+. .+. ...++.
T Consensus 211 ~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 287 (306)
T TIGR02716 211 ESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMP-FSV-LGFKEQ 287 (306)
T ss_pred CCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccc-ccc-ccCCCH
Confidence 467778999999999999999999999999999999999999998776543 221111111 1111111 111 123458
Q ss_pred HHHHHHHHHcCCceeEEE
Q 048707 82 QDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (114)
+||.+||+++||+.+++.
T Consensus 288 ~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 288 ARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHcCCCeeEec
Confidence 999999999999988753
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.38 E-value=1.9e-12 Score=85.78 Aligned_cols=81 Identities=27% Similarity=0.416 Sum_probs=65.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+||+.+++-|++|++..+.|++|.++|+|||.|+|-|.+..... ..+| ...+...|+.+.|++
T Consensus 122 ~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D-----~~DsSvTRs~~~~~~ 187 (218)
T PF05891_consen 122 KYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD-----EEDSSVTRSDEHFRE 187 (218)
T ss_dssp -EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE-----TTTTEEEEEHHHHHH
T ss_pred cEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC-----CccCeeecCHHHHHH
Confidence 36999999999999999999999999999999999999999876431 1222 245667899999999
Q ss_pred HHHHcCCceeEEEEc
Q 048707 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
+|++||+++++...-
T Consensus 188 lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 188 LFKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHHCT-EEEEEEE-
T ss_pred HHHHcCCEEEEeccc
Confidence 999999999986543
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=4.6e-13 Score=90.51 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhh-------------
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLA------------- 71 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~------------- 71 (114)
++.+|+++++.++|++++++..+++++++++|+|||.+++.|.+..+++..... ...........
T Consensus 120 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~ 197 (239)
T TIGR00740 120 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL--LIDLHHQFKRANGYSELEISQKRT 197 (239)
T ss_pred CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455799999999999999888999999999999999999999876554321110 00000000000
Q ss_pred -ccCCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEE
Q 048707 72 -HTTGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFL 111 (114)
Q Consensus 72 -~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~ 111 (114)
....-+..|.+++.+++++|||+.+++......+.++.++
T Consensus 198 ~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 198 ALENVMRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 0011246799999999999999987765555555554444
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=8.8e-11 Score=80.58 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=67.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcch--hhhhccCC----------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDC--IMLAHTTG---------- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------- 75 (114)
+|+|+++.++|++++. .++|++++++|+|||++++.|...++.+...... ...+.. .......+
T Consensus 146 fD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261)
T PLN02233 146 FDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKS 221 (261)
T ss_pred EeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHH
Confidence 5999999999999875 4899999999999999999998655432111110 000100 00000000
Q ss_pred --ceecCHHHHHHHHHHcCCceeEEEEcCCce-eEEEEE
Q 048707 76 --GREMTEQDFKTLAKAAGFQGFKVVCSAFST-YIMEFL 111 (114)
Q Consensus 76 --g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-~ii~a~ 111 (114)
...++.+|+.++|+++||+.++.....++. .+..|+
T Consensus 222 s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 222 SINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 234689999999999999999888776544 455443
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=7e-12 Score=85.27 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchh-hh----hh--hhcchhhhh-----c
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLA-SK----QV--IHIDCIMLA-----H 72 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~-~~----~~--~~~~~~~~~-----~ 72 (114)
++.+|++++..++|++++++...++++++++|+|||.+++.|.+..++...... .. +. ..+...... .
T Consensus 123 ~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~ 202 (247)
T PRK15451 123 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML 202 (247)
T ss_pred CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345799999999999998888999999999999999999999765554322110 00 00 011100000 0
Q ss_pred cCCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 048707 73 TTGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLK 112 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~ 112 (114)
...-...|.++..+||++|||+.+.+......+..+.|+|
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 242 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 242 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence 0012245889999999999999887655544454444443
No 8
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=1.2e-10 Score=74.57 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=65.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhh--hc-cCC---------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIML--AH-TTG--------- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~--------- 75 (114)
.|+|++..++|+++|. .++|++++++|+|||.++|.|...++....... ..+....... +. ...
T Consensus 45 fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~ 120 (160)
T PLN02232 45 FDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKY 120 (160)
T ss_pred eeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHH
Confidence 5999999999999875 589999999999999999999865432110000 0000000000 00 000
Q ss_pred --ceecCHHHHHHHHHHcCCceeEEEEcCCce-eEEEEE
Q 048707 76 --GREMTEQDFKTLAKAAGFQGFKVVCSAFST-YIMEFL 111 (114)
Q Consensus 76 --g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-~ii~a~ 111 (114)
....+.+|+.++|+++||+.++......+. ++..+.
T Consensus 121 si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 121 SINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred HHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 123578999999999999999887775433 454443
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.16 E-value=5e-10 Score=76.95 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCH
Q 048707 4 SIPK--ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTE 81 (114)
Q Consensus 4 ~~p~--~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
++|. +|+|++..+++|++.++..++|+++++.|+|||++++.|........... ..... .. ...-...+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~--~~~~~----~~--~~~~~~~~~ 183 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE--EFKAY----IK--KRKYTLIPI 183 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH--HHHHH----HH--hcCCCCCCH
Confidence 3453 59999999999998777889999999999999999999986554211111 01100 00 011123588
Q ss_pred HHHHHHHHHcCCceeEEEEcC
Q 048707 82 QDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+++.++|+++||+.+......
T Consensus 184 ~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 184 QEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHHHCCCCeeeEEeCc
Confidence 999999999999999887754
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.13 E-value=2.3e-10 Score=72.28 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=60.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++.++|||++| ...+|+++++.|+|||.+++.+...... .. ..+..+ ..... .......++.++|.++
T Consensus 79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~---~~~~~~-~~~~~-~~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDP-SP---RSFLKW-RYDRP-YGGHVHFFSPDELRQL 150 (161)
T ss_dssp EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HH---HHHHHC-CGTCH-HTTTTEEBBHHHHHHH
T ss_pred hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcch-hh---hHHHhc-CCcCc-cCceeccCCHHHHHHH
Confidence 599999999999997 4699999999999999999999764321 10 001111 11111 1134567899999999
Q ss_pred HHHcCCceeE
Q 048707 88 AKAAGFQGFK 97 (114)
Q Consensus 88 l~~aGf~~~~ 97 (114)
++++||++++
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.12 E-value=2.2e-11 Score=82.29 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=37.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh-hhcc-hhh-hh--ccCC-------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQV-IHID-CIM-LA--HTTG------- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~-~~~~-~~~-~~--~~~~------- 75 (114)
.|+|.++..+|+++|.. +.|++++|+|||||+++|+|...++.+. ..... ..+. +.. ++ ...+
T Consensus 117 fD~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL 191 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL---LRALYKFYFKYILPLIGRLLSGDREAYRYL 191 (233)
T ss_dssp EEEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH---HHHHHHH-----------------------
T ss_pred eeEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch---hhceeeeeeccccccccccccccccccccc
Confidence 49999999999999854 7999999999999999999997775421 11111 0111 100 00 0001
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 048707 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSA-FSTYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~ii~a~~ 112 (114)
....+.+++.++|+++||+.++..+.. |..+++.++|
T Consensus 192 ~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 192 PESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCC
Confidence 112466899999999999999887764 4456666654
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.08 E-value=2.3e-09 Score=72.57 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchh-h---hhc--cCC
Q 048707 4 SIPK--ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCI-M---LAH--TTG 75 (114)
Q Consensus 4 ~~p~--~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~ 75 (114)
|+|. .|+|.++..|++++|. .++|++++|+|||||++++.|...+..+... .....+... . .+. ..+
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~ 188 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKD 188 (238)
T ss_pred CCCCCccCEEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecC
Confidence 4454 4999999999999985 5999999999999999999998766553221 111112211 1 000 001
Q ss_pred -----------ceecCHHHHHHHHHHcCCceeEEEEcCCce-eEEEEEe
Q 048707 76 -----------GREMTEQDFKTLAKAAGFQGFKVVCSAFST-YIMEFLK 112 (114)
Q Consensus 76 -----------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-~ii~a~~ 112 (114)
-...+.+++.++++++||+.+.......+. .+..+.|
T Consensus 189 ~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 189 AEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 112467899999999999999866665444 4554443
No 13
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.07 E-value=2e-09 Score=72.09 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=69.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhh---h-ccCC--------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIML---A-HTTG-------- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-------- 75 (114)
+|+|++++++|++++. ..+|+++.+.|+|||.+++.|...+.... .......+...+. . ...+
T Consensus 122 ~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 122 FDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 5999999999999885 48999999999999999999976543311 0000000000000 0 0000
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 048707 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSA-FSTYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~ii~a~~ 112 (114)
...++.++|.++|+++||+.+++.... +..+++.|+|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998864 5678998885
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.04 E-value=2.2e-09 Score=76.13 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=60.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++|++++.+ ++|+++++.|+|||++++.+...++... . ....+..+ ...+.+|+.++
T Consensus 179 FDvVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~----~--r~~~~~~~-------~~~t~eEl~~l 243 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWL----S--RFFADVWM-------LFPKEEEYIEW 243 (340)
T ss_pred eeEEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhH----H--HHhhhhhc-------cCCCHHHHHHH
Confidence 59999999999999875 7999999999999999998765432110 0 00111111 12579999999
Q ss_pred HHHcCCceeEEEEcCC
Q 048707 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
|+++||+.+++....+
T Consensus 244 L~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 244 FTKAGFKDVKLKRIGP 259 (340)
T ss_pred HHHCCCeEEEEEEcCh
Confidence 9999999999877644
No 15
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.03 E-value=3.1e-09 Score=74.68 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=61.1
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|++..+|||+++. ..+|++++++|+|||.+++.+.+.+............ +..+. ..-...+.+++.+
T Consensus 188 ~FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r---y~k~~---nv~flpS~~~L~~ 259 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR---YAKMK---NVYFIPSVSALKN 259 (314)
T ss_pred CcCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH---HHhcc---ccccCCCHHHHHH
Confidence 36999999999999886 4799999999999999999887665432211000000 00010 0012358999999
Q ss_pred HHHHcCCceeEEEEc
Q 048707 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
||+++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988654
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.02 E-value=3.8e-09 Score=70.13 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=67.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhh-------ccCC-----
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLA-------HTTG----- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----- 75 (114)
+|+|+++.++|+.++. ..+++++++.|+|||++++.+...+... ... .....+...+.. ...+
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--LLK-KFYKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--hhH-HHHHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 6999999999998875 5899999999999999999997544321 100 000000000000 0000
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEEe
Q 048707 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSAFS-TYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~ii~a~~ 112 (114)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999888765 45777664
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.00 E-value=5.1e-09 Score=73.89 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=61.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++||..+. ..+|+++++.|+|||.+++.+.+.+.+.......... + ..+. ..-..+|.+++.+|
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~--y-~~~~---~~~~lps~~~l~~~ 261 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDR--Y-AKMR---NVYFIPSVPALKNW 261 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhH--H-hcCc---cceeCCCHHHHHHH
Confidence 5999999999999876 4799999999999999998776655442211000000 0 0010 00124689999999
Q ss_pred HHHcCCceeEEEEcC
Q 048707 88 AKAAGFQGFKVVCSA 102 (114)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (114)
|+++||+.+++....
T Consensus 262 L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 262 LERAGFKDVRIVDVS 276 (322)
T ss_pred HHHcCCceEEEEeCC
Confidence 999999999887653
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.99 E-value=3.2e-09 Score=71.23 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=67.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-hcchhhh--h-------------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVI-HIDCIML--A------------- 71 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~-~~~~~~~--~------------- 71 (114)
.|+|++..++|++++. .++|+++.+.|+|||.+++.|...+..+ ....... .+...+. .
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 5999999999999886 4899999999999999999886543321 1110000 0000000 0
Q ss_pred ccCCceecCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEEe
Q 048707 72 HTTGGREMTEQDFKTLAKAAGFQGFKVVCSA-FSTYIMEFLK 112 (114)
Q Consensus 72 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~ii~a~~ 112 (114)
........+.+++.++|+++||+.+++.... +..+++.++|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123578999999999999999998876 5567777765
No 19
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.94 E-value=1.2e-08 Score=70.27 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=61.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++|++++. .++++++++.|+|||++++.+...... .... ...+..+.. ...+..++.++|.++
T Consensus 147 fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~-----~~~~~~~~~-~~~~~~~~~~e~~~~ 217 (272)
T PRK11873 147 VDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGE-LPEE-----IRNDAELYA-GCVAGALQEEEYLAM 217 (272)
T ss_pred eeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCC-CCHH-----HHHhHHHHh-ccccCCCCHHHHHHH
Confidence 5999999999998875 479999999999999999999875432 1111 111222221 223446789999999
Q ss_pred HHHcCCceeEEEE
Q 048707 88 AKAAGFQGFKVVC 100 (114)
Q Consensus 88 l~~aGf~~~~~~~ 100 (114)
|+++||..+++..
T Consensus 218 l~~aGf~~v~i~~ 230 (272)
T PRK11873 218 LAEAGFVDITIQP 230 (272)
T ss_pred HHHCCCCceEEEe
Confidence 9999999987743
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.92 E-value=1e-08 Score=75.51 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=61.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..+++|+++. .++++++++.|+|||++++.|........... .... . ...+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~-----~-~~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEY-----I-KQRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHH-----H-HhcCCCCCCHHHHHHH
Confidence 5999999999999985 48999999999999999999986544321111 1111 1 1123346789999999
Q ss_pred HHHcCCceeEEEEc
Q 048707 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
++++||+.+.+...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877543
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=98.86 E-value=3.4e-08 Score=70.20 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-chh-hhhhhhcchhhhhccCCceecCHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDP-SLA-SKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
+|+|++..++||++|. .++++++++.|+|||+++|.+......... ... ......+...... ..--...+.++|.
T Consensus 187 FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~p~~~s~~~~~ 263 (340)
T PLN02244 187 FDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA-YYLPAWCSTSDYV 263 (340)
T ss_pred ccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh-ccCCCCCCHHHHH
Confidence 5999999999999985 489999999999999999998754322111 000 0001111100000 0000124799999
Q ss_pred HHHHHcCCceeEEEEcC
Q 048707 86 TLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~~ 102 (114)
++++++||..+++....
T Consensus 264 ~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 264 KLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHHHCCCCeeEeeeCc
Confidence 99999999999887553
No 22
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=3.7e-08 Score=65.11 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=79.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+..+++|-.+-+.+..+++.+.+.|+|||.|++.-+...+..-.++ -...+|............|+.+++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 59999999999999999999999999999999999998876554321111 123445444433334557999999999
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEe
Q 048707 88 AKAAGFQGFKVVCSAFSTYIMEFLK 112 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~ii~a~~ 112 (114)
.+++|++..+.+.++.+.-++..+|
T Consensus 180 A~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999999988776666654
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.83 E-value=1.1e-08 Score=72.13 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=58.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..+|||++|.+ .+|+++++.|+|||.++|.+.......-........+.............+.++.+|+.++
T Consensus 199 FD~Vi~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 199 FDAVLSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred CCEEEEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 69999999999999875 8999999999999999998753211000000000000111000000001235799999999
Q ss_pred HHHcCCceeEEEE
Q 048707 88 AKAAGFQGFKVVC 100 (114)
Q Consensus 88 l~~aGf~~~~~~~ 100 (114)
|+++||+++++..
T Consensus 277 L~~aGf~i~~~~G 289 (322)
T PLN02396 277 LQRASVDVKEMAG 289 (322)
T ss_pred HHHcCCeEEEEee
Confidence 9999999988843
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.81 E-value=3.1e-08 Score=66.17 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=59.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...++||+++. ..+++++++.|+|||.+++.+...+.. ..... . .......+.++|.++
T Consensus 68 fD~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~-------~------~~~~~~~s~~~~~~~ 131 (224)
T smart00828 68 YDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLL-SAIEH-------E------ETTSYLVTREEWAEL 131 (224)
T ss_pred CCEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccC-ccccc-------c------ccccccCCHHHHHHH
Confidence 6999999999999874 589999999999999999998753321 11000 0 001114578999999
Q ss_pred HHHcCCceeEEEEcCC
Q 048707 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
++++||+.++....+.
T Consensus 132 l~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 132 LARNNLRVVEGVDASL 147 (224)
T ss_pred HHHCCCeEEEeEECcH
Confidence 9999999998876643
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.81 E-value=2.9e-08 Score=67.74 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=54.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh--hhcchhhhh--ccCCceecCHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQV--IHIDCIMLA--HTTGGREMTEQ 82 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~g~~rt~~ 82 (114)
.+|+|+++.++|++++. .++++++++.|+|||++++......+.+......... ..+...... ...+....+.+
T Consensus 89 ~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 89 DTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 46999999999999875 5899999999999999998643211111000000000 001100000 01122346899
Q ss_pred HHHHHHHHcCCceeE
Q 048707 83 DFKTLAKAAGFQGFK 97 (114)
Q Consensus 83 e~~~ll~~aGf~~~~ 97 (114)
++.++|+++||++..
T Consensus 167 ~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 167 GYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999998543
No 26
>PRK08317 hypothetical protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=63.33 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch-hhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSL-ASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
+|+|++.+++|++++. ..+++++++.|+|||.+++.+........... .......... . ........+..+|.+
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 162 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--W-SDHFADPWLGRRLPG 162 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--H-HhcCCCCcHHHHHHH
Confidence 5999999999999986 47999999999999999998853222110000 0000111111 1 011122355679999
Q ss_pred HHHHcCCceeEEEE
Q 048707 87 LAKAAGFQGFKVVC 100 (114)
Q Consensus 87 ll~~aGf~~~~~~~ 100 (114)
+|+++||+.+++..
T Consensus 163 ~l~~aGf~~~~~~~ 176 (241)
T PRK08317 163 LFREAGLTDIEVEP 176 (241)
T ss_pred HHHHcCCCceeEEE
Confidence 99999999876643
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.68 E-value=7e-08 Score=65.91 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=58.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch----hhhhhhhcchhhhhccCCceecCHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSL----ASKQVIHIDCIMLAHTTGGREMTEQD 83 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (114)
+|+|++..++|++++.. .+++++++.|+|||.++|............. .......+..............+.++
T Consensus 113 fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 113 VDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 59999999999998864 8999999999999999997653221000000 00000000000000000122467899
Q ss_pred HHHHHHHcCCceeEEEEcCC
Q 048707 84 FKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 84 ~~~ll~~aGf~~~~~~~~~~ 103 (114)
+.++|+++||+++...-+.+
T Consensus 191 l~~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 191 VYQWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred HHHHHHHCCCeEeeeeeEEE
Confidence 99999999999987765543
No 28
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.65 E-value=1.9e-07 Score=63.59 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhh------------
Q 048707 4 SIPK--ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIM------------ 69 (114)
Q Consensus 4 ~~p~--~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~------------ 69 (114)
|+|. +|.|.++.-+-+|++.+ +.|++++|+|||||++.+.|+-..+.. +..++...+....
T Consensus 172 pFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDR 246 (296)
T ss_pred CCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhH
Confidence 3454 49999999999999964 999999999999999999997433321 1222221111111
Q ss_pred -----hhccCCceecCHHHHHHHHHHcCCceeE
Q 048707 70 -----LAHTTGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 70 -----~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
+.++. -+..+.+++..+.++|||..+.
T Consensus 247 ~sYqYLveSI-~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVESI-RRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhhh-hcCCCHHHHHHHHHHcCCcccc
Confidence 11111 1234678999999999999987
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.65 E-value=1.4e-07 Score=69.63 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=59.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+++.++|++++++..++++++++.|+|||.+++.|.......... . .......|+..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK---------R-----KNNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc---------c-----cCCCCeecChHHHHHH
Confidence 5999999999999998889999999999999999999997654331110 0 0112334678899999
Q ss_pred HHHcCCceeE
Q 048707 88 AKAAGFQGFK 97 (114)
Q Consensus 88 l~~aGf~~~~ 97 (114)
+.++||....
T Consensus 170 f~~~~~~~~~ 179 (475)
T PLN02336 170 FKECHTRDED 179 (475)
T ss_pred HHHheeccCC
Confidence 9999998864
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.64 E-value=3.7e-07 Score=60.20 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=55.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+++.++|++++++...++++++++|+|||.+++.+....++...+. ..-...+.+|+.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~----------------~~~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV----------------GFPFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCC----------------CCCCccCHHHHHHH
Confidence 69999999999999888899999999999999998877765433211000 00123578899999
Q ss_pred HHHcCCceeEE
Q 048707 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
++ ||+.+..
T Consensus 160 ~~--~~~~~~~ 168 (197)
T PRK11207 160 YE--GWEMVKY 168 (197)
T ss_pred hC--CCeEEEe
Confidence 96 8988776
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.52 E-value=1.5e-06 Score=57.29 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=55.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC-CCCchhhhhhhhcchhhhhccCCceecCHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVL-PDPSLASKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
.+|+|+++.++|++++++...+++++++.|+|||.++|.+....+. +.++ ......+.+|+.
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~-----------------~~~~~~~~~el~ 156 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM-----------------PFSFTFKEDELR 156 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC-----------------CcCccCCHHHHH
Confidence 3699999999999998888899999999999999988877643322 1100 001246789999
Q ss_pred HHHHHcCCceeEEE
Q 048707 86 TLAKAAGFQGFKVV 99 (114)
Q Consensus 86 ~ll~~aGf~~~~~~ 99 (114)
++|+ +|++....
T Consensus 157 ~~f~--~~~~~~~~ 168 (195)
T TIGR00477 157 QYYA--DWELLKYN 168 (195)
T ss_pred HHhC--CCeEEEee
Confidence 9995 68887765
No 32
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.49 E-value=5.1e-07 Score=60.23 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=57.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchh-hhhcc----C-CceecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCI-MLAHT----T-GGREMT 80 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~-~g~~rt 80 (114)
.+|+|++.+++|+..+.. .+|+++++.|+|||.+++.+..... ... ........ ..... . .....+
T Consensus 112 ~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (224)
T TIGR01983 112 SFDVVTCMEVLEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTP---KSY---LLAIVGAEYILRIVPKGTHDWEKFIK 183 (224)
T ss_pred CccEEEehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCc---hHH---HHHHHhhhhhhhcCCCCcCChhhcCC
Confidence 369999999999998864 7999999999999999987642111 000 00000000 00000 0 112357
Q ss_pred HHHHHHHHHHcCCceeEEEE
Q 048707 81 EQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~ 100 (114)
..+|.++++++||+++++..
T Consensus 184 ~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 184 PSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHHHHHcCCeeeeeee
Confidence 88999999999999988754
No 33
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=5.9e-07 Score=60.67 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=63.7
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCce---ecCHHHHH
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGR---EMTEQDFK 85 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e~~ 85 (114)
|.+.+-.+|--++++.-..++.++++.|||||.|++.|.-..+--- ....-...++.... ....|. ..+.+++.
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq--lRF~~~~~i~~nfY-VRgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ--LRFKKGQCISENFY-VRGDGTRAYFFTEEELD 222 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH--HhccCCceeecceE-EccCCceeeeccHHHHH
Confidence 9999999999999999999999999999999999999986554210 00000122222222 233443 35899999
Q ss_pred HHHHHcCCceeEE
Q 048707 86 TLAKAAGFQGFKV 98 (114)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (114)
+|+++|||..++.
T Consensus 223 ~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 223 ELFTKAGFEEVQL 235 (264)
T ss_pred HHHHhcccchhcc
Confidence 9999999998765
No 34
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.48 E-value=1.5e-06 Score=60.61 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=61.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCc-eecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGG-REMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~rt~~e~~~ 86 (114)
.|+|++-.||.|..++- ..|++++++|+|||.+++-..+.+.+.........++. ...|. ..-|.+-+..
T Consensus 183 FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-------~m~nv~FiPs~~~L~~ 253 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-------KMRNVWFIPSVAALKN 253 (315)
T ss_pred cCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-------CCCceEEeCCHHHHHH
Confidence 59999999999999874 89999999999999999977766654321100000100 11121 2458999999
Q ss_pred HHHHcCCceeEEEEc
Q 048707 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
||+++||+.+++...
T Consensus 254 wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 254 WLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHcCCceEEEecC
Confidence 999999999998765
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.47 E-value=7.5e-07 Score=59.90 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=56.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhh---hhhcchhhhhccCCceecCHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQ---VIHIDCIMLAHTTGGREMTEQDF 84 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~rt~~e~ 84 (114)
+|+|++++++++.++.. .+|+++.+.|+|||.+++.... ... ....... ..................+.++|
T Consensus 115 fD~Ii~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPA--SFVRACAKLVKPGGLVFFSTLN--RNL-KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL 189 (233)
T ss_pred ccEEEEhhHhhccCCHH--HHHHHHHHHcCCCcEEEEEecC--CCh-HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence 69999999999998754 7999999999999999987542 111 0000000 00011000000011234588999
Q ss_pred HHHHHHcCCceeEEEE
Q 048707 85 KTLAKAAGFQGFKVVC 100 (114)
Q Consensus 85 ~~ll~~aGf~~~~~~~ 100 (114)
.++++++||++++...
T Consensus 190 ~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 190 AAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999987753
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.43 E-value=1.8e-07 Score=53.83 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=31.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
.|+|++.+++|++++ ..+++++++|.|||||+++|
T Consensus 61 fD~v~~~~~~~~~~~--~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNSVLHHLED--PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEESHGGGSSH--HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccceeeccC--HHHHHHHHHHHcCcCeEEeC
Confidence 499999999999944 56999999999999999986
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.36 E-value=5.8e-07 Score=62.21 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=62.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|.|+.-.++.|+.++.....++++.+.|+|||++++......+.+..........++.-. .-++|...+.+++..
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILR 203 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHH
Confidence 46999999999999988888999999999999999999887665432100000000122222 135777788999999
Q ss_pred HHHHcCCceeEEEEcC
Q 048707 87 LAKAAGFQGFKVVCSA 102 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~ 102 (114)
.++++||++..+...+
T Consensus 204 ~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTT-EEEEEEE-H
T ss_pred HHhcCCEEEEEEEEcC
Confidence 9999999998876553
No 38
>PRK04266 fibrillarin; Provisional
Probab=98.33 E-value=5.4e-06 Score=55.96 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=52.2
Q ss_pred ceEEEeccccccCChH-HHHHHHHHHHHhCCCCCEEEEE-eeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHH
Q 048707 8 ADVIFMKWICHNWSEE-ACVKILKNCYEALPENGKVIVA-ECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~-~~~~~l~~~~~aL~pgG~lii~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
.|+++ |+.+++ ....+|+++++.|+|||+++|. .. ..-+... .. . +..++..
T Consensus 142 ~D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~d~~~------------------~~-~-~~~~~~~ 195 (226)
T PRK04266 142 VDVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSIDVTK------------------DP-K-EIFKEEI 195 (226)
T ss_pred CCEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccccCcC------------------CH-H-HHHHHHH
Confidence 47776 555543 3356789999999999999994 22 0000000 00 0 1124556
Q ss_pred HHHHHcCCceeEEEEcCCc---eeEEEEEeC
Q 048707 86 TLAKAAGFQGFKVVCSAFS---TYIMEFLKK 113 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~~~~---~~ii~a~~~ 113 (114)
++++++||+.++.....+. +..+.+++|
T Consensus 196 ~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 196 RKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred HHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 9999999999999887654 777777765
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.32 E-value=7.9e-06 Score=56.85 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=55.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++..++|++++++...+++++++.|+|||.++++.....++...+. .-...++.+|+.++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~----------------p~~~~~~~~el~~~ 248 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPM----------------PFSFTFKEGELKDY 248 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCC----------------CCCcccCHHHHHHH
Confidence 69999999999999888899999999999999998887654332211100 00123578899999
Q ss_pred HHHcCCceeEEE
Q 048707 88 AKAAGFQGFKVV 99 (114)
Q Consensus 88 l~~aGf~~~~~~ 99 (114)
++ +|++++..
T Consensus 249 ~~--~~~i~~~~ 258 (287)
T PRK12335 249 YQ--DWEIVKYN 258 (287)
T ss_pred hC--CCEEEEEe
Confidence 94 68888764
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.30 E-value=1.1e-06 Score=60.55 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=37.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|+|++.++||++++++..+++++++++|+|||.+++-..
T Consensus 204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 5999999999999999899999999999999999999553
No 41
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.29 E-value=1.1e-05 Score=53.89 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=60.5
Q ss_pred ceEEEeccccccCCh-HHHHHHHHHHHHhCCCCCE-----EEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCH
Q 048707 8 ADVIFMKWICHNWSE-EACVKILKNCYEALPENGK-----VIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTE 81 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~-----lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
+|+|.+|-||-++|+ .+..++|+++++.|+|+|. |+|+ +|.. +..|.+..+.
T Consensus 105 FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~-------------------Cv~NSRy~~~ 162 (219)
T PF11968_consen 105 FDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLP-------------------CVTNSRYMTE 162 (219)
T ss_pred eeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCch-------------------HhhcccccCH
Confidence 599999999999996 5588999999999999999 6663 2221 2346677789
Q ss_pred HHHHHHHHHcCCceeEEEEcCC
Q 048707 82 QDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
+.|.++++..||..++......
T Consensus 163 ~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 163 ERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHhCCcEEEEEEecCe
Confidence 9999999999999999866644
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.24 E-value=8.8e-07 Score=51.89 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=23.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKV 42 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~l 42 (114)
.+|+|++++++||+++ ...+++++++.|+|||+|
T Consensus 66 ~fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 66 SFDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred ccceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 4699999999999954 469999999999999986
No 43
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.21 E-value=9.2e-06 Score=58.76 Aligned_cols=87 Identities=8% Similarity=-0.064 Sum_probs=61.1
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|+...+++|++++....+++++++.|+|||.+++.+...+...... ..+++-.. -.+|...+.+++..
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~yi---fp~g~lps~~~i~~ 299 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKYI---FPNGCLPSVRQIAQ 299 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceeee---cCCCcCCCHHHHHH
Confidence 36999999999999887778999999999999999999876544322111 11111111 24556667888888
Q ss_pred HHHHcCCceeEEEEcC
Q 048707 87 LAKAAGFQGFKVVCSA 102 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~ 102 (114)
.++ .||.+.++...+
T Consensus 300 ~~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 300 ASE-GLFVMEDWHNFG 314 (383)
T ss_pred HHH-CCcEEEEEecCh
Confidence 766 589887776544
No 44
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.20 E-value=4.6e-06 Score=54.92 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=53.7
Q ss_pred ceEEEeccccccCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSE-EACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
+|+|+++-++|++++ ++...+++++.++|+|||.+++.... +. . +..-|.....+.+.+
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~----~--------------c~~wgh~~ga~tv~~ 166 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DA----N--------------CRRWGHAAGAETVLE 166 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HH----H--------------HHHTT-S--HHHHHH
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CC----c--------------ccccCcccchHHHHH
Confidence 599999999999986 67889999999999999999997752 11 0 112334456888899
Q ss_pred HHHHcCCceeEEEEc
Q 048707 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
+|++. |+.++....
T Consensus 167 ~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 167 MLQEH-LTEVERVEC 180 (201)
T ss_dssp HHHHH-SEEEEEEEE
T ss_pred HHHHH-hhheeEEEE
Confidence 99887 677766655
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.20 E-value=9.8e-06 Score=54.08 Aligned_cols=89 Identities=10% Similarity=0.011 Sum_probs=56.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhh--ccCCceecCHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLA--HTTGGREMTEQDF 84 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~rt~~e~ 84 (114)
..|+|++..+++++++++..++++++++.+++++.+.+ .+...... ....+...... .......++.+++
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKTAWLA----FLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCchHHH----HHHHHHhhCcCcccccceEEecHHHH
Confidence 36999999999999988888999999998876543332 12211100 00011111100 0112345689999
Q ss_pred HHHHHHcCCceeEEEEcCC
Q 048707 85 KTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 85 ~~ll~~aGf~~~~~~~~~~ 103 (114)
.++++++||+++.......
T Consensus 191 ~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 191 ERALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHHcCceeeeeecccc
Confidence 9999999999998876644
No 46
>PRK06202 hypothetical protein; Provisional
Probab=98.18 E-value=6.6e-06 Score=55.41 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=56.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhh---h--ccCC-----ce
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIML---A--HTTG-----GR 77 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~-----g~ 77 (114)
+|+|+++.+|||+++++..++|+++++.++ |.+++.|...+.. . . ......... . ...+ -+
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~-~----~~~~~~~~~~~~~~~~~~d~~~s~~~ 200 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A-Y----ALFWAGTRLLSRSSFVHTDGLLSVRR 200 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H-H----HHHHHHHHHhccCceeeccchHHHHh
Confidence 599999999999999888899999999987 6677766543311 0 0 000000000 0 0111 23
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEc
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.+|.+|+.+++++ ||++....+.
T Consensus 201 ~~~~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 201 SYTPAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred hcCHHHHHHHhhC-CCeEEeccce
Confidence 5799999999999 9998766554
No 47
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=2.1e-05 Score=52.38 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=62.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+...+|.-..|+ .+.|+++++.|+|||++++.|.+..+-..-... .....+-..- ....|...|++.|+ .
T Consensus 146 ~DtVV~TlvLCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i--~q~v~ep~~~-~~~dGC~ltrd~~e-~ 219 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWH-LESDGCVLTRDTGE-L 219 (252)
T ss_pred eeeEEEEEEEeccCCH--HHHHHHHHHhcCCCcEEEEEecccccchHHHHH--HHHHhchhhh-eeccceEEehhHHH-H
Confidence 4999999999977775 599999999999999999999887654211000 0001111001 23467778887776 5
Q ss_pred HHHcCCceeEEEEcCC
Q 048707 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
|++|-|+..+..+...
T Consensus 220 Leda~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 220 LEDAEFSIDSCKRFNF 235 (252)
T ss_pred hhhcccccchhhcccC
Confidence 6678899988877654
No 48
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.16 E-value=2.7e-05 Score=54.63 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=32.4
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
.++++...+++++++++.++|++++++|+|||.++|
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 466667899999999999999999999999999986
No 49
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.15 E-value=1.7e-06 Score=59.50 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=49.7
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHH
Q 048707 10 VIFMKWICHNWSE-EACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLA 88 (114)
Q Consensus 10 ~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (114)
.+++..+||+++| ++...+++.++++|.||+.|+|+....+..+. ... ......-. ....+..||.+|+.++|
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~--~~~---~~~~~~~~-~~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE--RAE---ALEAVYAQ-AGSPGRPRSREEIAAFF 226 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH--HHH---HHHHHHHH-CCS----B-HHHHHHCC
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH--HHH---HHHHHHHc-CCCCceecCHHHHHHHc
Confidence 7888999999998 67899999999999999999999986543321 111 11111111 23457789999999999
Q ss_pred HHcCCceeE
Q 048707 89 KAAGFQGFK 97 (114)
Q Consensus 89 ~~aGf~~~~ 97 (114)
.||+.++
T Consensus 227 --~g~elve 233 (267)
T PF04672_consen 227 --DGLELVE 233 (267)
T ss_dssp --TTSEE-T
T ss_pred --CCCccCC
Confidence 4888754
No 50
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.13 E-value=3.9e-06 Score=58.50 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=36.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.|+|++.++|.|++++...+++++++++|+|||.|++-.
T Consensus 224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 599999999999999999999999999999999887744
No 51
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.10 E-value=7.7e-06 Score=54.65 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=54.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+.++++|+.++. .++++++++.|+|||.+++.+...... .. ...... .......+.++|.++
T Consensus 99 fD~vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~---~~~~~~------~~~~~~~~~~~~~~~ 164 (240)
T TIGR02072 99 FDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTL---HE---LRQSFG------QHGLRYLSLDELKAL 164 (240)
T ss_pred eeEEEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCH---HH---HHHHHH------HhccCCCCHHHHHHH
Confidence 5999999999998775 489999999999999999976432211 00 000000 122335688999999
Q ss_pred HHHcCCceeEEE
Q 048707 88 AKAAGFQGFKVV 99 (114)
Q Consensus 88 l~~aGf~~~~~~ 99 (114)
++++ |+...+.
T Consensus 165 l~~~-f~~~~~~ 175 (240)
T TIGR02072 165 LKNS-FELLTLE 175 (240)
T ss_pred HHHh-cCCcEEE
Confidence 9988 8876553
No 52
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.10 E-value=3.5e-06 Score=57.64 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=59.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCc-----eecCH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGG-----REMTE 81 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~rt~ 81 (114)
.+|+|+++.|++|..|.. .+++.+.+.|+|||+++|.+....-..... ..+++-..+.....| +..+.
T Consensus 158 ~fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p 230 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINP 230 (282)
T ss_pred ccceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCH
Confidence 379999999999999874 899999999999999999886422110000 111111111111222 34678
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 048707 82 QDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~ 100 (114)
+|..++++.+|+++..+.-
T Consensus 231 ~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 231 EELTSILNANGAQVNDVVG 249 (282)
T ss_pred HHHHHHHHhcCcchhhhhc
Confidence 9999999999999877643
No 53
>PRK05785 hypothetical protein; Provisional
Probab=98.09 E-value=4.1e-05 Score=51.62 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=59.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcc--hhh-hh--ccCC-------
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHID--CIM-LA--HTTG------- 75 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~--~~~-~~--~~~~------- 75 (114)
.|+|+++.++|+++|.+ +++++++++|+| .+.|+|...++.+. ......++. +.. .+ ...+
T Consensus 111 fD~v~~~~~l~~~~d~~--~~l~e~~RvLkp--~~~ile~~~p~~~~---~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl 183 (226)
T PRK05785 111 FDVVMSSFALHASDNIE--KVIAEFTRVSRK--QVGFIAMGKPDNVI---KRKYLSFYLRYIMPYIACLAGAKCRDYKYI 183 (226)
T ss_pred EEEEEecChhhccCCHH--HHHHHHHHHhcC--ceEEEEeCCCCcHH---HHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 59999999999998864 899999999999 35566654433211 111111110 000 00 0111
Q ss_pred ----ceecCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEEe
Q 048707 76 ----GREMTEQDFKTLAKAAGFQGFKVVCSAFS-TYIMEFLK 112 (114)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~ii~a~~ 112 (114)
-...+.+++.++++++| ..++......+ -++..++|
T Consensus 184 ~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 184 YYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 11246799999999984 66777776554 46777766
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.07 E-value=2.5e-05 Score=52.18 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=55.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhh-hhccCCceecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIM-LAHTTGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ 86 (114)
.|+|++..++||+++++...+++++.+.++++ .++.. .+..+... .......... ..........+.++|.+
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~~i~~---~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLTRGS-LIFTF---APYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRR 200 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhcCCe-EEEEE---CCccHHHH---HHHHhccccCCccCCCCccccCHHHHHH
Confidence 59999999999999998999999999876433 33321 12111000 0000000000 00111234568899999
Q ss_pred HHHHcCCceeEEEEcCC
Q 048707 87 LAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~~ 103 (114)
+++++||++.++.....
T Consensus 201 ~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 201 ALAAAGFKVVRTERISS 217 (230)
T ss_pred HHHHCCCceEeeeeccc
Confidence 99999999998877643
No 55
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.07 E-value=2.8e-06 Score=56.17 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=34.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.|+|++.+||.+++++...+++++++++|+|||.|++-.
T Consensus 137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 599999999999999999999999999999999999954
No 56
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.06 E-value=5.1e-05 Score=52.83 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred ceEEEeccccccCChHH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCC----ceecCHH
Q 048707 8 ADVIFMKWICHNWSEEA-CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTG----GREMTEQ 82 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~rt~~ 82 (114)
-++++.|.++-.++|.+ ....|+.+++++.|||.|+-.-. |..|..+-.+..+ ..+..+ .+.||..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ-----PwHPQle~IAr~L----tsHr~g~~WvMRrRsq~ 280 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ-----PWHPQLEMIARVL----TSHRDGKAWVMRRRSQA 280 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC-----CCCcchHHHHHHH----hcccCCCceEEEecCHH
Confidence 38999999999999966 66689999999999999987432 2222111011111 101111 3579999
Q ss_pred HHHHHHHHcCCceeEEE-EcCCceeEEEEEe
Q 048707 83 DFKTLAKAAGFQGFKVV-CSAFSTYIMEFLK 112 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~-~~~~~~~ii~a~~ 112 (114)
|+.+|+++|||+-.+.. .--+.++|-.|+|
T Consensus 281 EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 281 EMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999976553 3345677777764
No 57
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.05 E-value=4.4e-06 Score=56.44 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=59.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcch-hhhhccCC-----ceecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDC-IMLAHTTG-----GREMT 80 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----g~~rt 80 (114)
++|+|++-.||+|++|++ .+++.|.+-+||||.+++....... . +.....+.. ..+...+. .+...
T Consensus 124 ~FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~--k----a~~~~i~~ae~vl~~vP~gTH~~~k~ir 195 (243)
T COG2227 124 QFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTL--K----AYLLAIIGAEYVLRIVPKGTHDYRKFIK 195 (243)
T ss_pred CccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCH--H----HHHHHHHHHHHHHHhcCCcchhHHHhcC
Confidence 469999999999999986 6999999999999999998764221 1 111111110 01111122 23456
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 048707 81 EQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.+|...++.++|+...+...+
T Consensus 196 p~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 196 PAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHHHHHhcccCCceEEeecce
Confidence 799999999999998877543
No 58
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.03 E-value=1.4e-06 Score=54.95 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=52.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|+...++|++++.. .+++++.+.|++||.+++.+......-. ........ +..........+. +.++|..
T Consensus 73 ~~D~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ 146 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELP-EQLEELMN-LYSEVWSMIYIGN--DKEEWKY 146 (152)
T ss_dssp TEEEEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHH-HHHHHHHH-HHHHHHHHCC-----CCCGHHH
T ss_pred CeeEEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHH-HHHHHHHH-HHHHHhhhhhccc--CHHHHHH
Confidence 579999999999999864 8999999999999999999987222100 01110011 1111110011122 8899999
Q ss_pred HHHHcC
Q 048707 87 LAKAAG 92 (114)
Q Consensus 87 ll~~aG 92 (114)
+|++||
T Consensus 147 ~~~~ag 152 (152)
T PF13847_consen 147 ILEEAG 152 (152)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 999998
No 59
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.02 E-value=1.1e-05 Score=48.07 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=34.8
Q ss_pred CcceEEEecc-ccccCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 6 PKADVIFMKW-ICHNWSE-EACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 6 p~~D~v~~~~-vlh~~~d-~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+.+|+|++.. .+|++.+ ++..++++++++.|+|||+++|.+
T Consensus 69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3479999999 6775554 678999999999999999999975
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.01 E-value=3.8e-05 Score=52.40 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=51.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhh---h--hhcchhhhh-ccCCceecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQ---V--IHIDCIMLA-HTTGGREMT 80 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~---~--~~~~~~~~~-~~~~g~~rt 80 (114)
..|+|+++.++|+++|. .+++++++++|+|||.+++.- ++....+..... . ..+...+.. ........+
T Consensus 93 ~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 167 (258)
T PRK01683 93 ALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPP 167 (258)
T ss_pred CccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCC
Confidence 46999999999999875 489999999999999998852 222111100000 0 000111100 000123356
Q ss_pred HHHHHHHHHHcCCce
Q 048707 81 EQDFKTLAKAAGFQG 95 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~ 95 (114)
.+++.+++.++|+.+
T Consensus 168 ~~~~~~~l~~~g~~v 182 (258)
T PRK01683 168 PHAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHHhCCCce
Confidence 789999999999875
No 61
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=2.1e-05 Score=54.63 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=69.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|-|+.-.+++|+..+.-...++++++.|+|||+++++....++.+... ...++.-. ...+|...+..+..+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~~~i~~y---iFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FPDFIDKY---IFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----chHHHHHh---CCCCCcCCCHHHHHHH
Confidence 6999999999999999899999999999999999999998766543211 11122111 2468888899999999
Q ss_pred HHHcCCceeEEEEcCC
Q 048707 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
.+++||.+.+....+.
T Consensus 211 ~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 211 ASEAGFVVLDVESLRP 226 (283)
T ss_pred HHhcCcEEehHhhhcH
Confidence 9999999988765543
No 62
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.97 E-value=6.5e-05 Score=53.09 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhcc--CCceecCHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHT--TGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt~~e~~ 85 (114)
+|+|++..++||++++....+++++.+ +.+| .++|.. .+....... .. .+.-...... ......+.++++
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~~~~~---l~-~~g~~~~g~~~~~r~y~~s~eel~ 284 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTLYYDI---LK-RIGELFPGPSKATRAYLHAEADVE 284 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcchHHHH---HH-HHHhhcCCCCcCceeeeCCHHHHH
Confidence 599999999999999887788888875 4554 445422 222110000 00 0000000000 011234899999
Q ss_pred HHHHHcCCceeEEEEcCC
Q 048707 86 TLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~~~ 103 (114)
++|+++||++.+..-...
T Consensus 285 ~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 285 RALKKAGWKVARREMTAT 302 (315)
T ss_pred HHHHHCCCEEEEEEEeec
Confidence 999999999987654433
No 63
>PTZ00146 fibrillarin; Provisional
Probab=97.97 E-value=0.00015 Score=50.75 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=51.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
..|+|++... ..++...++.++++.|+|||.++|.-. .......+ .-..+=.+|. +
T Consensus 202 ~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ik-a~~id~g~------------------~pe~~f~~ev-~ 257 (293)
T PTZ00146 202 MVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIISIK-ANCIDSTA------------------KPEVVFASEV-Q 257 (293)
T ss_pred CCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEEEe-ccccccCC------------------CHHHHHHHHH-H
Confidence 3699976653 123445677789999999999999321 11111110 0011112455 8
Q ss_pred HHHHcCCceeEEEEcCC---ceeEEEEEeC
Q 048707 87 LAKAAGFQGFKVVCSAF---STYIMEFLKK 113 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~~---~~~ii~a~~~ 113 (114)
+|+++||+.++.....+ .++++.++.+
T Consensus 258 ~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 258 KLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred HHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 89999999998887754 4567776654
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.96 E-value=0.00019 Score=46.46 Aligned_cols=77 Identities=22% Similarity=0.149 Sum_probs=57.1
Q ss_pred cceEEEeccccccCChHH-------------------HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcch
Q 048707 7 KADVIFMKWICHNWSEEA-------------------CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDC 67 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~-------------------~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~ 67 (114)
.+|+|+++..+|+.+++. ..++++++.+.|+|||++++++....
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------- 144 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------- 144 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence 469999998888776431 35789999999999999999763211
Q ss_pred hhhhccCCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEe
Q 048707 68 IMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLK 112 (114)
Q Consensus 68 ~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~ 112 (114)
...++.++|+++||+...+...+-.+--+.+.|
T Consensus 145 ------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 ------------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 145678889999999988877766555555544
No 65
>PRK06922 hypothetical protein; Provisional
Probab=97.93 E-value=1.7e-05 Score=60.61 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=38.9
Q ss_pred ceEEEeccccccC-----------ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 8 ADVIFMKWICHNW-----------SEEACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 8 ~D~v~~~~vlh~~-----------~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
+|+|+++.++|+| ++++..++|++++++|+|||+++|.|.+.++.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence 5999999999986 35678899999999999999999999765543
No 66
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.90 E-value=5.8e-05 Score=51.32 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=53.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+.+.++|+.+|. .++|+++++.|+|||.+++.....+.- +. ....+...-. ........+.+++.++
T Consensus 104 fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~e---l~~~~~~~~~-~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 104 FDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---PE---LHQAWQAVDE-RPHANRFLPPDAIEQA 174 (251)
T ss_pred EEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---HH---HHHHHHHhcc-CCccccCCCHHHHHHH
Confidence 5999999999877775 589999999999999999977643221 11 1111110000 0112234688999999
Q ss_pred HHHcCCce
Q 048707 88 AKAAGFQG 95 (114)
Q Consensus 88 l~~aGf~~ 95 (114)
++..|+..
T Consensus 175 l~~~~~~~ 182 (251)
T PRK10258 175 LNGWRYQH 182 (251)
T ss_pred HHhCCcee
Confidence 99988764
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.84 E-value=0.00033 Score=46.89 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=53.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-CchhhhhhhhcchhhhhccCCceecCHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPD-PSLASKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
..|.|+-..++|+++++...+.++++.++|+|||.+++.-...++... ++ -...+.+|+.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gp-------------------p~~~~~~eL~ 173 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGP-------------------PFSVSPAEVE 173 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCc-------------------CCCCCHHHHH
Confidence 359999999999999999999999999999999998887654432211 11 0135788888
Q ss_pred HHHHHcCCceeEE
Q 048707 86 TLAKAAGFQGFKV 98 (114)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (114)
++|+. +|.+...
T Consensus 174 ~~f~~-~~~i~~~ 185 (213)
T TIGR03840 174 ALYGG-HYEIELL 185 (213)
T ss_pred HHhcC-CceEEEE
Confidence 88863 4555544
No 68
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.80 E-value=4.8e-05 Score=52.57 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 5 IPK-ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 5 ~p~-~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+. .|+|++.|||-+++.+...+++++.++.|+|||.|+|=.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 444 599999999999999999999999999999999999944
No 69
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.79 E-value=0.00018 Score=48.00 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=54.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+++++-.|..-+ ....++++.|.|+|||.|+|.|.... . -+.++..+.
T Consensus 123 vDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SR---f------------------------~~~~~F~~~ 172 (219)
T PF05148_consen 123 VDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSR---F------------------------ENVKQFIKA 172 (219)
T ss_dssp EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S-HHHHHHH
T ss_pred eeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEeccc---C------------------------cCHHHHHHH
Confidence 39999988885433 45799999999999999999995211 0 035667888
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEeC
Q 048707 88 AKAAGFQGFKVVCSAFSTYIMEFLKK 113 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~ii~a~~~ 113 (114)
++..||+..........+.+++.+|+
T Consensus 173 ~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 173 LKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp HHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred HHHCCCeEEecccCCCeEEEEEEEEc
Confidence 89999999887767778899999886
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.76 E-value=0.0004 Score=46.67 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=53.3
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC-CCchhhhhhhhcchhhhhccCCceecCHHHH
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLP-DPSLASKQVIHIDCIMLAHTTGGREMTEQDF 84 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 84 (114)
+..|+|+-+.++|+++++...+.++++.++|+|||.++++....++.. .+++ ...+.+|+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el 175 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEV 175 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHH
Confidence 345999999999999999999999999999999998666544433221 1110 13578999
Q ss_pred HHHHHHcCCceeEEE
Q 048707 85 KTLAKAAGFQGFKVV 99 (114)
Q Consensus 85 ~~ll~~aGf~~~~~~ 99 (114)
.+++.. +|.+....
T Consensus 176 ~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 176 EALYAG-CFEIELLE 189 (218)
T ss_pred HHHhcC-CceEEEee
Confidence 999953 26665553
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.75 E-value=2e-05 Score=46.38 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.2
Q ss_pred cceEEEecc-ccccCChHHHHHHHHHHHHhCCCCC
Q 048707 7 KADVIFMKW-ICHNWSEEACVKILKNCYEALPENG 40 (114)
Q Consensus 7 ~~D~v~~~~-vlh~~~d~~~~~~l~~~~~aL~pgG 40 (114)
.+|+|+++. ++||+++++..++++++.+.|+|||
T Consensus 67 ~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 67 KFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 359999954 5999999999999999999999997
No 72
>PLN03075 nicotianamine synthase; Provisional
Probab=97.74 E-value=4.7e-05 Score=53.27 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|++. ++|+|+.++..++|+++++.|+|||.+++--. . +. +.+++-. -+.++.+
T Consensus 195 ~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~---~---G~-----r~~LYp~----------v~~~~~~- 251 (296)
T PLN03075 195 EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA---H---GA-----RAFLYPV----------VDPCDLR- 251 (296)
T ss_pred CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc---c---ch-----HhhcCCC----------CChhhCC-
Confidence 46999999 99999877788999999999999999998431 1 11 1122211 1122222
Q ss_pred HHHHcCCceeEEE-EcCC-ceeEEEEEeC
Q 048707 87 LAKAAGFQGFKVV-CSAF-STYIMEFLKK 113 (114)
Q Consensus 87 ll~~aGf~~~~~~-~~~~-~~~ii~a~~~ 113 (114)
||+...+. |.+. ..++|.++|+
T Consensus 252 -----gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 252 -----GFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred -----CeEEEEEECCCCCceeeEEEEEee
Confidence 99987664 4443 6789999886
No 73
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.70 E-value=7e-05 Score=51.45 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=57.3
Q ss_pred CCc-ceEEEeccccccCC--hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCH
Q 048707 5 IPK-ADVIFMKWICHNWS--EEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTE 81 (114)
Q Consensus 5 ~p~-~D~v~~~~vlh~~~--d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
+|+ +|+|++..+|.-.. .++-.+.++++.+.|||||.|++.... +.+. +...- .....-..++
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l-~~t~---------Y~vG~----~~F~~l~l~e 220 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL-GSTY---------YMVGG----HKFPCLPLNE 220 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES-S-SE---------EEETT----EEEE---B-H
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc-Ccee---------EEECC----EecccccCCH
Confidence 465 89999999987755 466889999999999999999998763 3220 00000 1122235689
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 048707 82 QDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~ 100 (114)
+.+++-|+++||.+.+...
T Consensus 221 e~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 221 EFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHcCCEEEeccc
Confidence 9999999999999988774
No 74
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.52 E-value=0.0003 Score=46.43 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=50.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+...|+++++.+...++++++.++++|||..++...+..++ .+.+ .. ....+...|+.+.
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~-------~~--------~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCP-------SP--------FPFLLKPGELREY 158 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--S-------S----------S--B-TTHHHHH
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCC-------CC--------CCcccCHHHHHHH
Confidence 599999899999999999999999999999999998866543222 1110 00 1123456788888
Q ss_pred HHHcCCceeEE
Q 048707 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
+ +|+.+++.
T Consensus 159 y--~dW~il~y 167 (192)
T PF03848_consen 159 Y--ADWEILKY 167 (192)
T ss_dssp T--TTSEEEEE
T ss_pred h--CCCeEEEE
Confidence 8 57888765
No 75
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.46 E-value=0.0014 Score=45.19 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=56.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+++.+-.|..-+ ....+.+++|.|+|||.++|.|.- ++.. +..++.+-
T Consensus 229 vDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~---SRf~------------------------dv~~f~r~ 278 (325)
T KOG3045|consen 229 VDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVK---SRFS------------------------DVKGFVRA 278 (325)
T ss_pred ccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehh---hhcc------------------------cHHHHHHH
Confidence 48888777664322 457999999999999999998852 1111 12336778
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEeCC
Q 048707 88 AKAAGFQGFKVVCSAFSTYIMEFLKKP 114 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~ii~a~~~~ 114 (114)
|+..||.+....-....+.+++..|.|
T Consensus 279 l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 279 LTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHcCCeeeehhhhcceEEEEEEecCC
Confidence 888999998877777788999988764
No 76
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.43 E-value=0.0008 Score=44.11 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=49.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch-hhh----hhhhcchhhhhccCCceecCHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSL-ASK----QVIHIDCIMLAHTTGGREMTEQ 82 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~g~~rt~~ 82 (114)
+|+|++++++||+++.. ++|+++.+.++ .+++.-........... ... ....+..... ...+.+..+.+
T Consensus 76 fD~Vi~~~~l~~~~d~~--~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~ 149 (194)
T TIGR02081 76 FDYVILSQTLQATRNPE--EILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIA 149 (194)
T ss_pred cCEEEEhhHhHcCcCHH--HHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHH
Confidence 69999999999998854 78888887654 44442111000000000 000 0000000000 01223467899
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 048707 83 DFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (114)
++.++++++||++++....
T Consensus 150 ~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHCCCEEEEEEEe
Confidence 9999999999999887654
No 77
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.40 E-value=0.0007 Score=45.02 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=35.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
+|+|++..+|||+++++..++++++++.+ ++.++|.|...+
T Consensus 106 fD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 106 FDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred EEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 59999999999999888899999999986 678888887543
No 78
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=6.7e-05 Score=47.81 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=37.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|+++..+|+-|++-++-...++.+++.|+|||.|-|.=+
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 5999999999999999999999999999999999988543
No 79
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.21 E-value=0.0034 Score=43.22 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=53.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC--------CCchhhhhhhhcchhhhhccCCceec
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLP--------DPSLASKQVIHIDCIMLAHTTGGREM 79 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~r 79 (114)
+|+|-+.|+|..-.++ ..+|+.++++|+|+|++++.=- +|=.+ ...+.+ .++ ......+-
T Consensus 152 fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e----~l~-----~~g~~~E~ 219 (265)
T PF05219_consen 152 FDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSE----LLP-----VKGATFEE 219 (265)
T ss_pred eEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchh----hcC-----CCCCcHHH
Confidence 6999999999887776 4899999999999999988542 22111 000100 111 01111122
Q ss_pred CHHHHHHHHHHcCCceeEEEEcC
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
..+.+.+.|+.+||++......+
T Consensus 220 ~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 220 QVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHHhcCCEEEEEeccC
Confidence 23344588999999999887654
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.17 E-value=0.008 Score=41.05 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=47.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|+.+.. .+....+++++.+.|+|||.+++.+.... ..+++.+
T Consensus 179 ~fD~Vvani~-----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~ 224 (250)
T PRK00517 179 KADVIVANIL-----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLE 224 (250)
T ss_pred CcCEEEEcCc-----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHH
Confidence 3588876422 23356789999999999999998643210 2456788
Q ss_pred HHHHcCCceeEEEEcCCceeE
Q 048707 87 LAKAAGFQGFKVVCSAFSTYI 107 (114)
Q Consensus 87 ll~~aGf~~~~~~~~~~~~~i 107 (114)
.+++.||+..++...+...++
T Consensus 225 ~l~~~Gf~~~~~~~~~~W~~~ 245 (250)
T PRK00517 225 AYEEAGFTLDEVLERGEWVAL 245 (250)
T ss_pred HHHHCCCEEEEEEEeCCEEEE
Confidence 999999999988776654443
No 81
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.16 E-value=0.002 Score=42.72 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=53.0
Q ss_pred ceEEEeccccccCC-----hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHH
Q 048707 8 ADVIFMKWICHNWS-----EEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQ 82 (114)
Q Consensus 8 ~D~v~~~~vlh~~~-----d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 82 (114)
.|+++....-|++. ...+.++-+.++++|||||.++|.|.......... + +..-..++.+
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------d------t~~~~ri~~a 187 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------D------TITLHRIDPA 187 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------h------hhhhcccChH
Confidence 37776654444432 45578999999999999999999998765432111 0 1111245677
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 048707 83 DFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (114)
-..+-.+.+||+..--..+
T Consensus 188 ~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 188 VVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHHhhcceeeeeehh
Confidence 8888899999998655443
No 82
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.13 E-value=0.0016 Score=36.92 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.3
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+.+|++++..+++++ .+....+++++.+.|+|||.+++.
T Consensus 65 ~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 346999999999885 445679999999999999999875
No 83
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.05 E-value=0.0031 Score=42.66 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=39.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
..|+|+=..+|+.++++...+-.+++.+.|+|||+++++-.-.+
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 35999999999999999999999999999999999999876443
No 84
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0085 Score=41.10 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCcceEEEecc----ccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecC
Q 048707 5 IPKADVIFMKW----ICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMT 80 (114)
Q Consensus 5 ~p~~D~v~~~~----vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 80 (114)
.|.+|+|++-. |=-+|.|+..+++++++++.|.|||.|++ .+++..+... .+.. ...++.+.--....
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-----EPQpWksY~k-aar~--~e~~~~ny~~i~lk 235 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-----EPQPWKSYKK-AARR--SEKLAANYFKIFLK 235 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-----cCCchHHHHH-HHHH--HHHhhcCccceecC
Confidence 45678777543 43468899999999999999999999887 3444443211 1111 10111122233456
Q ss_pred HHHHHHHHHHc--CCceeE
Q 048707 81 EQDFKTLAKAA--GFQGFK 97 (114)
Q Consensus 81 ~~e~~~ll~~a--Gf~~~~ 97 (114)
.+....|+.+. ||+.+.
T Consensus 236 p~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 236 PEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHhhhhhhhhheeeec
Confidence 78888999877 565543
No 85
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.89 E-value=0.0067 Score=39.49 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|++....+++ ..+++++++.|+|||++++.....+ +.++..++
T Consensus 98 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~ 143 (187)
T PRK08287 98 ADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAH 143 (187)
T ss_pred CCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHH
Confidence 6999988765433 3689999999999999988542110 13466678
Q ss_pred HHHcCCceeEE
Q 048707 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
++++||+.+++
T Consensus 144 l~~~g~~~~~~ 154 (187)
T PRK08287 144 LEKCGVSELDC 154 (187)
T ss_pred HHHCCCCcceE
Confidence 88889876665
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=96.82 E-value=0.024 Score=36.46 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
...+++++.+.|+|||.+++... .. ...+++.++++++||+...+...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~---~~--------------------------~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS---SL--------------------------TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc---cc--------------------------CCHHHHHHHHHHCCCeeeeeeec
Confidence 46789999999999999887531 00 12356788999999998876544
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.73 E-value=0.013 Score=39.59 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEcC
Q 048707 26 VKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
..+++++.+.|+|||.+++.. + ....+++.++|+++||+.+++....
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~---~---------------------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI---G---------------------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE---C---------------------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 478999999999999988721 0 0124678899999999998886653
No 88
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0095 Score=40.24 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch--hhh-hhh--hcchhhhhc-cCCceecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSL--ASK-QVI--HIDCIMLAH-TTGGREMT 80 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~--~~~-~~~--~~~~~~~~~-~~~g~~rt 80 (114)
..|+++.+.+||-++|- .++|.++...|.|||.|.+.= +++...+. ..+ ... -+...+-.. ...+...+
T Consensus 92 ~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 92 PTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred ccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCC
Confidence 46999999999988875 489999999999999999953 33222110 000 000 011111000 01122457
Q ss_pred HHHHHHHHHHcCCceeEEEEc------CCceeEEEEEe
Q 048707 81 EQDFKTLAKAAGFQGFKVVCS------AFSTYIMEFLK 112 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~------~~~~~ii~a~~ 112 (114)
.+.|.++|...+-++ +++++ .+...|++..|
T Consensus 167 ~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 167 PAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHHHhCccccee-eeeeeeccccCCCccchhhhee
Confidence 899999998887444 66544 45567777765
No 89
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.47 E-value=0.0089 Score=42.84 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.5
Q ss_pred ceEEEeccccccC---ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNW---SEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~---~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|+|+++-.+|+. +.+...++++++.+.|+|||.++|+-.
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5999999899863 345578999999999999999999653
No 90
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.42 E-value=0.0096 Score=40.07 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=51.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC-CCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVL-PDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.|+|+=...|+-++++...+-.+.+.+.|+|||+++++-...+.. ..+++ ...+.+|+++
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP-------------------f~v~~~ev~~ 177 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP-------------------FSVTEEEVRE 177 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHH
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC-------------------CCCCHHHHHH
Confidence 599999999999999999999999999999999955544433322 11222 1236789999
Q ss_pred HHHHcCCceeEEE
Q 048707 87 LAKAAGFQGFKVV 99 (114)
Q Consensus 87 ll~~aGf~~~~~~ 99 (114)
++. .+|++....
T Consensus 178 l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 178 LFG-PGFEIEELE 189 (218)
T ss_dssp HHT-TTEEEEEEE
T ss_pred Hhc-CCcEEEEEe
Confidence 998 788876654
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.41 E-value=0.011 Score=42.99 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=32.7
Q ss_pred cceEEEeccccc---cCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICH---NWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh---~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|+++--+| .++++.+.++++.+++.|+|||+++|+-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 369999975554 3566777899999999999999999973
No 92
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.23 E-value=0.0089 Score=42.57 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=33.5
Q ss_pred CcceEEEecccccc-CC-hHHHHHHHHHHHHhCCCCCEEEE
Q 048707 6 PKADVIFMKWICHN-WS-EEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 6 p~~D~v~~~~vlh~-~~-d~~~~~~l~~~~~aL~pgG~lii 44 (114)
|..|+|=+..++|+ |. .+.++.+|+++.+.|+|||..+=
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 44799999999998 55 46689999999999999998875
No 93
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.23 E-value=0.0073 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
..|+|++....+ ...++++++++.|+|||.+++.
T Consensus 88 ~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 369998866443 3458999999999999999874
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.16 E-value=0.018 Score=38.38 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred ceEEEeccccccCChHH---------HHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEA---------CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~---------~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|+|+...+.|...+.. ...+|+.+++.|+|||.+++...
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 59999876665543321 25799999999999999999764
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.07 E-value=0.1 Score=35.75 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc-CC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS-AF 103 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 103 (114)
..++++++.+.|+|||.+++ +. +. ...+++.+++++.||+.+++..- .+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~-e~--g~---------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL-EI--GY---------------------------DQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE-EE--Cc---------------------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence 46789999999999999988 11 00 01345888999999997776433 33
Q ss_pred ceeEEEEE
Q 048707 104 STYIMEFL 111 (114)
Q Consensus 104 ~~~ii~a~ 111 (114)
.--++.++
T Consensus 267 ~~r~~~~~ 274 (275)
T PRK09328 267 RDRVVLGR 274 (275)
T ss_pred CceEEEEE
Confidence 33344443
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.00 E-value=0.067 Score=36.60 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=63.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|....||-++.+-+ .++.-+...|+|||.+..+-.-.++... +-+... +. -..++.-.+++
T Consensus 189 ~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~----------f~l~ps-~R---yAH~~~YVr~~ 252 (287)
T COG4976 189 FDLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGG----------FVLGPS-QR---YAHSESYVRAL 252 (287)
T ss_pred ccchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCC----------eecchh-hh---hccchHHHHHH
Confidence 69999999999999854 8999999999999999886544443310 110000 00 12467888999
Q ss_pred HHHcCCceeEEEEcCC--------ceeEEEEEeCC
Q 048707 88 AKAAGFQGFKVVCSAF--------STYIMEFLKKP 114 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~--------~~~ii~a~~~~ 114 (114)
++..||+++++.+++- .-.++.|+||+
T Consensus 253 l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 253 LAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred HHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 9999999999876521 12466777664
No 97
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.95 E-value=0.1 Score=34.49 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=58.3
Q ss_pred CCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC-------CC-chhhhhhhhcchhhhhccC
Q 048707 5 IPK--ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLP-------DP-SLASKQVIHIDCIMLAHTT 74 (114)
Q Consensus 5 ~p~--~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~ 74 (114)
+|. .|.|+++.+|.++..++ ++|+++.|. |.+.+|.=+...-=+ .+ .+.+ ..+..... .+.
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt---~~lPy~WY-dTP 141 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVT---KALPYEWY-DTP 141 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCC---CCCCCccc-CCC
Confidence 454 49999999999998875 789988776 667776443111000 00 0000 00011111 255
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEcCCc
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFKVVCSAFS 104 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 104 (114)
|-+..|..+.+++.++.|+++.+.....+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 667789999999999999999998776543
No 98
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.90 E-value=0.0022 Score=38.53 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=43.1
Q ss_pred ceEEEecccc---c-cCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHH
Q 048707 8 ADVIFMKWIC---H-NWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQD 83 (114)
Q Consensus 8 ~D~v~~~~vl---h-~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (114)
+|+|++-.|- | ++.|+...++++++++.|+|||.+++ |+ ++..+. .. .....-.+. .....-....++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w~sY-~~-~~~~~~~~~-~n~~~i~lrP~~ 73 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPWKSY-KK-AKRLSEEIR-ENYKSIKLRPDQ 73 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------HHHH-HT-TTTS-HHHH-HHHHH----GGG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCcHHH-HH-HhhhhHHHH-hHHhceEEChHH
Confidence 4777765542 2 46788899999999999999999887 32 222111 00 000000000 111122233456
Q ss_pred HHHHHHH--cCCceeEEEEc
Q 048707 84 FKTLAKA--AGFQGFKVVCS 101 (114)
Q Consensus 84 ~~~ll~~--aGf~~~~~~~~ 101 (114)
..++|.+ .||+..+....
T Consensus 74 F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHTSTTT---EEEEE--
T ss_pred HHHHHHhcccceEEEEEccc
Confidence 7787877 69999876544
No 99
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=95.82 E-value=0.05 Score=32.00 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=51.2
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcc-hhhhhc-cCCceecCHHHHHHHHHHcC
Q 048707 15 WICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHID-CIMLAH-TTGGREMTEQDFKTLAKAAG 92 (114)
Q Consensus 15 ~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~rt~~e~~~ll~~aG 92 (114)
++|-|++.++..++|+++... -.|++++ .+.|.++.- . ...... +..-.. +.......++++.+.++++|
T Consensus 3 DvLIHYp~~d~~~~l~~La~~--t~~~~if--TfAP~T~~L---~-~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g 74 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASR--TRGSLIF--TFAPRTPLL---A-LMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAG 74 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHh--ccCcEEE--EECCCCHHH---H-HHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCC
Confidence 467789999999999998764 3556666 344554211 0 011111 010000 01122456799999999999
Q ss_pred CceeEEEEcCCcee
Q 048707 93 FQGFKVVCSAFSTY 106 (114)
Q Consensus 93 f~~~~~~~~~~~~~ 106 (114)
|++.+...+..+++
T Consensus 75 ~~~~r~~ris~gFY 88 (97)
T PF07109_consen 75 WRIGRTERISSGFY 88 (97)
T ss_pred CeeeecccccCcCh
Confidence 99999888866553
No 100
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.69 E-value=0.021 Score=36.73 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCCCC--cceEEEeccccccCCh---HHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 2 FVSIP--KADVIFMKWICHNWSE---EACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 2 f~~~p--~~D~v~~~~vlh~~~d---~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
++.++ .+|+|+++=-+|.-.+ +-..++++++.+.|+|||.++++-
T Consensus 91 ~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 91 FEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 45555 3599999877776554 346899999999999999998744
No 101
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.64 E-value=0.013 Score=41.84 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=33.6
Q ss_pred ceEEEecccccc-CC-hHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHN-WS-EEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~-~~-d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|+|=+...||+ +. .+.++.+|+++.+.|+|||.++..-+
T Consensus 146 FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 146 FDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999 44 55588899999999999999998654
No 102
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.60 E-value=0.016 Score=37.79 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=25.4
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
.+|+|++.. +|++ ..+++.+++.|+|||++++.
T Consensus 109 ~fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 109 QFDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence 469988765 5543 34788889999999999985
No 103
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.47 E-value=0.036 Score=39.46 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=32.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHH-hCCCCCEEEE
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYE-ALPENGKVIV 44 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~-aL~pgG~lii 44 (114)
-++++..++.+++++++..+|+++++ .|+|||.++|
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 46666779999999999999999999 9999998887
No 104
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.42 E-value=0.13 Score=35.48 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=54.1
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhh-hhccCCceecCHHHHHHH
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIM-LAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~l 87 (114)
-++++-.++.+++.++..++|+.+.+...||+.|++ |.+.+-...... ........... .....--...+.++..++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRA-GMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHH-HHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 478888899999999999999999998888887775 554331111100 00000000000 000000112568999999
Q ss_pred HHHcCCceeEE
Q 048707 88 AKAAGFQGFKV 98 (114)
Q Consensus 88 l~~aGf~~~~~ 98 (114)
|++.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998664
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.42 Score=33.80 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCCCCc-ceEEEeccccccCC---hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCce
Q 048707 2 FVSIPK-ADVIFMKWICHNWS---EEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGR 77 (114)
Q Consensus 2 f~~~p~-~D~v~~~~vlh~~~---d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 77 (114)
+++.+. +|+|+++=-+|.=- +.-..++++.+.+.|++||.|.|+=. .. .+
T Consensus 218 ~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~--l~--------------------- 271 (300)
T COG2813 218 YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN---RH--LP--------------------- 271 (300)
T ss_pred cccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc---CC--CC---------------------
Confidence 344444 69999888888532 33456999999999999999999654 11 11
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEeC
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLKK 113 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~~ 113 (114)
+...|++. |..+++....+.+.|+.|+|.
T Consensus 272 ------y~~~L~~~-Fg~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 272 ------YEKKLKEL-FGNVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred ------hHHHHHHh-cCCEEEEEeCCCEEEEEEecC
Confidence 12223333 556666777777788877763
No 106
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.22 E-value=0.029 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.6
Q ss_pred ceEEEecccccc------CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHN------WSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~------~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.|+|++....+. ........+++++++.|+|||.+++..
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 488887654321 111124679999999999999999854
No 107
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.97 E-value=0.04 Score=40.12 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=38.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
.|.+++++++--+++++..+..+++.++++|||+++.-....+
T Consensus 296 ~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 296 FDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred eeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4999999999989999999999999999999999999765433
No 108
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.96 E-value=0.056 Score=37.59 Aligned_cols=45 Identities=11% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 4 SIPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
+++..|+|+++++|-.+++++..++++++.+.+.+ .|+|+|.-.+
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 34456999999999999998899999999887766 8999997444
No 109
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=94.86 E-value=0.055 Score=35.57 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=26.9
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|++..+ .+ ...+++++++.|+|||++++.+
T Consensus 112 ~fDlV~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 112 KFDVVTSRAV----AS--LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CccEEEEccc----cC--HHHHHHHHHHhcCCCeEEEEEe
Confidence 3699998652 22 3579999999999999999874
No 110
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.025 Score=40.91 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCcceEEEeccccccCChHHHH----HHHHHHHHhCCCCCEEEEEeeecC
Q 048707 4 SIPKADVIFMKWICHNWSEEACV----KILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~d~~~~----~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
++|.+|.|-+..++|.+-++... -.++++...+.|||.++|+|.-.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 56667777776666665444433 489999999999999999997433
No 111
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.76 E-value=0.03 Score=39.10 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=34.6
Q ss_pred ceEEEeccccccCChHH-HHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEA-CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|..+...++|||+... ..++++++.+.|+|||..+|.-.
T Consensus 104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 59999999999999644 77999999999999999777544
No 112
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.43 E-value=0.59 Score=32.61 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=49.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE-EeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV-AECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.|+|+....+. +-....+-|..+++.||||| ++| .-+..-.. . +.. . ......+.+.+|+.+
T Consensus 166 ~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~---------~---~~~-~-~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 166 FDVVVTCFFID--TAENIIEYIETIEHLLKPGG-YWINFGPLLYHF---------E---PMS-I-PNEMSVELSLEEIKE 228 (270)
T ss_pred ccEEEEEEEee--chHHHHHHHHHHHHHhccCC-EEEecCCccccC---------C---CCC-C-CCCcccCCCHHHHHH
Confidence 48888775553 22337789999999999999 444 22211111 0 000 0 012235789999999
Q ss_pred HHHHcCCceeEEEE
Q 048707 87 LAKAAGFQGFKVVC 100 (114)
Q Consensus 87 ll~~aGf~~~~~~~ 100 (114)
+.+..||++++-..
T Consensus 229 l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 229 LIEKLGFEIEKEES 242 (270)
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999987654
No 113
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.34 E-value=0.072 Score=35.28 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=24.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++..+++++++ ++.+.|+|||++++.
T Consensus 143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred ccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 699999998876653 466789999999884
No 114
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.33 E-value=0.042 Score=41.16 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=37.6
Q ss_pred CCCCCc-ceEEEeccccccCCh-HHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 2 FVSIPK-ADVIFMKWICHNWSE-EACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 2 f~~~p~-~D~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
|...|. +|++...+++-.+.+ -+...+|-++-|.|+|||.++|-|.
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 445665 599999999988775 3356899999999999999999775
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.31 E-value=0.062 Score=34.96 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=26.9
Q ss_pred ceEEEeccccc---cCC------hHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICH---NWS------EEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh---~~~------d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
.|+|+.....| .|+ .+...++++++++.|+|||++++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 59999754322 111 122468999999999999999985
No 116
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.19 E-value=0.33 Score=34.27 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=55.0
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhc---chhhhhccCCceecCHHHHH
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHI---DCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~rt~~e~~ 85 (114)
=+.++..++.+++.++..++|+++....+||+.++..-..................+ +.... ...-......++.
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~~~~e~~ 249 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRG--ELVYFGDDPAEIE 249 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccc--cceeccCCHHHHH
Confidence 388889999999999999999999999999988877543111111110000000000 00000 0011134589999
Q ss_pred HHHHHcCCceeEE
Q 048707 86 TLAKAAGFQGFKV 98 (114)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (114)
.++.+.||+....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999998766
No 117
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.06 E-value=0.11 Score=34.14 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=25.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
.+|+|++.. ...+...+++.+.+.|+|||++++
T Consensus 111 ~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 368888743 223346899999999999999986
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.00 E-value=0.16 Score=37.43 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=33.1
Q ss_pred ceEEEe------ccccccCCh-------H-------HHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 8 ADVIFM------KWICHNWSE-------E-------ACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 8 ~D~v~~------~~vlh~~~d-------~-------~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
+|.|++ ..++++.++ + ...++|.++.+.|+|||+++++.+....
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 598885 346665544 1 1368999999999999999999876543
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.68 E-value=0.11 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|+|+++... +....+++++++.|+|||.+++...
T Consensus 226 fDlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 226 ADVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ceEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5999875432 2345799999999999999999764
No 120
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=93.28 E-value=0.12 Score=33.91 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 048707 26 VKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d 46 (114)
..+++++++.|+|||.+++..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 479999999999999998854
No 121
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.93 E-value=0.2 Score=34.68 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=27.4
Q ss_pred ceEEEeccccccCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICHNWSEEA--CVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~--~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++....+.-+... ..+.++++++.|+|||.+++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 69998765533222222 357889999999999999985
No 122
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.82 E-value=0.18 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|+|++....++++ +.+.+.|+|||++++..
T Consensus 146 fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 146 YDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 59999988776543 34566899999999853
No 123
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=92.53 E-value=0.14 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=28.2
Q ss_pred cceEEEeccccccCCh------HHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICHNWSE------EACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d------~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|+++--.+.... +....+++++.+.|+|||.++++-
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 3699998876664321 124688999999999999998863
No 124
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=92.30 E-value=0.31 Score=32.14 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=28.7
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 4 SIPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
++|..|.+++...- + ...+|+.+.+.|+|||+|++.=
T Consensus 99 ~~~~~daiFIGGg~---~---i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 99 DLPSPDAIFIGGGG---N---IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCCCEEEECCCC---C---HHHHHHHHHHHcCcCCeEEEEe
Confidence 45556888888762 2 3479999999999999999843
No 125
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=92.28 E-value=0.15 Score=35.05 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCC-EEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENG-KVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG-~lii~d~ 47 (114)
.|+|....++|-++-+ +..+.+++.|++.| .+.+--.
T Consensus 101 VDlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred eeeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 4999999999987775 79999999999976 5555433
No 126
>PRK14967 putative methyltransferase; Provisional
Probab=92.13 E-value=0.5 Score=31.62 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
...+++++.+.|+|||+++++..
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEe
Confidence 45688999999999999998654
No 127
>PRK00811 spermidine synthase; Provisional
Probab=91.99 E-value=0.45 Score=33.23 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=26.3
Q ss_pred ceEEEeccccccCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICHNWSEEA--CVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~--~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++-..-+.-+... ..+.++.+++.|+|||.+++.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 69998754333222221 357899999999999998863
No 128
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=91.90 E-value=0.2 Score=34.58 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=23.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|+|+.... + ..+++++++|+|||.++++..
T Consensus 152 fD~I~~~~~-----~----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 152 LDAIIRIYA-----P----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eeEEEEecC-----C----CCHHHHHhhccCCCEEEEEeC
Confidence 599986432 1 246788999999999998753
No 129
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.56 E-value=0.39 Score=31.75 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=24.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|+|++...++++ .+.+.+.|+|||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 6999988776654 345678999999999854
No 130
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=91.50 E-value=1.4 Score=30.40 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEcCC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
..++-+++++.|+|||+++= .+-.+. . . .+..| -.....+.|+++||..++......
T Consensus 224 seefY~El~RiLkrgGrlFH--YvG~Pg--~-r----yrG~d-------------~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 224 SEEFYRELYRILKRGGRLFH--YVGNPG--K-R----YRGLD-------------LPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHHHHHHHHHcCcCCcEEE--EeCCCC--c-c----cccCC-------------hhHHHHHHHHhcCceeeeeehhcc
Confidence 45788999999999999874 322221 1 0 11111 245778999999999887765543
No 131
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=91.24 E-value=0.53 Score=30.87 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.8
Q ss_pred eEEEeccccccCCh----------HHHHHHHHHHHHhCCCCCEEEEE
Q 048707 9 DVIFMKWICHNWSE----------EACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 9 D~v~~~~vlh~~~d----------~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
|+|++++.||+++- +...++++++.+.|+|+..++-.
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~ 98 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWN 98 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEe
Confidence 99999999999875 33567777777777777554443
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=91.16 E-value=1.2 Score=31.27 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=42.6
Q ss_pred ceEEEeccccccCChHHHH------------------HHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhh
Q 048707 8 ADVIFMKWICHNWSEEACV------------------KILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIM 69 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~------------------~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~ 69 (114)
.|+|++.--+++.+.++.. +.++.....|+|+|.+.++ ....+. +.
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~~----------y~--- 190 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRPY----------YD--- 190 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eecccc----------cc---
Confidence 6999998888876654322 4556666778888866665 222110 00
Q ss_pred hhccCCceecCHHHHHHHHHHcCCce
Q 048707 70 LAHTTGGREMTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 70 ~~~~~~g~~rt~~e~~~ll~~aGf~~ 95 (114)
...+.+|++++|+++||..
T Consensus 191 -------~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 191 -------GTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred -------ccCCHHHHHHHHHhcCcEe
Confidence 1246889999999999865
No 133
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=91.08 E-value=0.49 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
.+|+|++.....+.+ +.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 369999887655443 4567889999999984
No 134
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=91.01 E-value=0.54 Score=34.78 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
..++|+++.+.|+|||+|+.+.+....
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 368999999999999999998865543
No 135
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=90.90 E-value=0.26 Score=35.78 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
+|.+....+..|.++.. .++++++++++|||..++.|.+.-.
T Consensus 179 fd~v~~ld~~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred cCcEEEEeecccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 48999999999999864 8999999999999999999976543
No 136
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.76 E-value=0.29 Score=34.70 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
++..+.|..+.+.|+|||+|+|+-+..-++
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 447789999999999999999999876554
No 137
>PRK04457 spermidine synthase; Provisional
Probab=90.72 E-value=0.45 Score=32.86 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=26.2
Q ss_pred ceEEEeccccccC--ChH-HHHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICHNW--SEE-ACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh~~--~d~-~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++. .++.- +.. ...++++++++.|+|||.+++.
T Consensus 137 yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 137 TDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 6999874 33321 111 1268999999999999999984
No 138
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=90.64 E-value=0.53 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.443 Sum_probs=27.6
Q ss_pred CCCc--ceEEEeccccccCChH-----HHHHHHHHHHHhCCCCCEEEEEe
Q 048707 4 SIPK--ADVIFMKWICHNWSEE-----ACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 4 ~~p~--~D~v~~~~vlh~~~d~-----~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|. .|.|++.... -|+.. ....+|+.++++|+|||.+.+..
T Consensus 187 ~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 187 LLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred hCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3454 3888764332 13221 12478999999999999999854
No 139
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.57 E-value=0.088 Score=39.52 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCCc--ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 4 SIPK--ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 4 ~~p~--~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
|+|. .|+|..++++..|...+ ..+|-++-|.|+|||.+++.-.-
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 4555 39999999999999876 47999999999999999887653
No 140
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.28 E-value=0.83 Score=27.00 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=30.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
.|++ .....+++.+ ....++++.+.++|+|.+++.+.....
T Consensus 120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4888 4554444444 568999999999999999998875443
No 141
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.01 E-value=0.69 Score=29.86 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=29.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+|+|+.+.++++ ++....+++-+.+.|+|+|.+++....
T Consensus 120 ~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 120 FDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp BSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 699999999974 555788999999999999998876654
No 142
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=89.92 E-value=2.3 Score=29.32 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEcCC-
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSAF- 103 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~- 103 (114)
-..+++.+.+.|||||++.++-. .. ...|+.+++.+.+|...++..+.+
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r---~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHR---PE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEec---HH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence 45789999999999999998542 21 134677888888888877765532
Q ss_pred -----ceeEEEEEeC
Q 048707 104 -----STYIMEFLKK 113 (114)
Q Consensus 104 -----~~~ii~a~~~ 113 (114)
.+-++++.|.
T Consensus 199 ~~k~A~~vLv~~~k~ 213 (248)
T COG4123 199 IGKAANRVLVEAIKG 213 (248)
T ss_pred CCCcceEEEEEEecC
Confidence 4567888764
No 143
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.83 E-value=0.56 Score=33.31 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
++..+.|+.+.+.|+|||+|+|+-+..-++
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 346788999999999999999999875554
No 144
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=89.76 E-value=0.24 Score=34.07 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=50.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCce-----ecC-H
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGR-----EMT-E 81 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~rt-~ 81 (114)
.|+++.+..+|-.+| ...-+.+|..+|||+|.++- .+...+ ...+.+....+.-+ ...+|. ..+ .
T Consensus 138 ~DLiisSlslHW~Nd--LPg~m~~ck~~lKPDg~Fia--smlggd----TLyELR~slqLAel-ER~GGiSphiSPf~qv 208 (325)
T KOG2940|consen 138 VDLIISSLSLHWTND--LPGSMIQCKLALKPDGLFIA--SMLGGD----TLYELRCSLQLAEL-EREGGISPHISPFTQV 208 (325)
T ss_pred hhhhhhhhhhhhhcc--CchHHHHHHHhcCCCccchh--HHhccc----cHHHHHHHhhHHHH-HhccCCCCCcChhhhh
Confidence 499999999985554 35778899999999986654 222322 11122222233222 222332 122 3
Q ss_pred HHHHHHHHHcCCceeEE
Q 048707 82 QDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (114)
.++-.+|..|||....+
T Consensus 209 rDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 209 RDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhHHhhcCccccee
Confidence 68889999999998654
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=89.62 E-value=1.3 Score=31.30 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=46.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+.+ ++ .+....+...+.+.|+|||.++++-.... . .+++.+.
T Consensus 226 ~dlvvAN-I~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-~----------------------------~~~v~~a 271 (295)
T PF06325_consen 226 FDLVVAN-IL----ADVLLELAPDIASLLKPGGYLILSGILEE-Q----------------------------EDEVIEA 271 (295)
T ss_dssp EEEEEEE-S-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-G----------------------------HHHHHHH
T ss_pred CCEEEEC-CC----HHHHHHHHHHHHHhhCCCCEEEEccccHH-H----------------------------HHHHHHH
Confidence 5888843 33 33456788889999999999999655322 1 3345666
Q ss_pred HHHcCCceeEEEEcCCceeEEEEEeC
Q 048707 88 AKAAGFQGFKVVCSAFSTYIMEFLKK 113 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~ii~a~~~ 113 (114)
+++ ||+..+....+. -..+.++||
T Consensus 272 ~~~-g~~~~~~~~~~~-W~~l~~~Kk 295 (295)
T PF06325_consen 272 YKQ-GFELVEEREEGE-WVALVFKKK 295 (295)
T ss_dssp HHT-TEEEEEEEEETT-EEEEEEEE-
T ss_pred HHC-CCEEEEEEEECC-EEEEEEEeC
Confidence 666 999988776654 445556655
No 146
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=89.61 E-value=0.91 Score=33.74 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 26 VKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
.++|+++.+.|+|||+++...+....
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 47999999999999999998875543
No 147
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=89.37 E-value=0.57 Score=31.32 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=25.9
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
.+||+|++++.. |+++-..++ ++....||+|.+++-.....+..
T Consensus 121 s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 121 SDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp HC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT
T ss_pred cCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCC
Confidence 457999999986 676655444 67778899999988766665544
No 148
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.37 E-value=0.63 Score=30.41 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
...+++++++.|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 46899999999999999999764
No 149
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=89.28 E-value=1.2 Score=30.95 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 048707 24 ACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii 44 (114)
...++++++.+.|+|||.+++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEE
Confidence 467899999999999998765
No 150
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=89.10 E-value=1 Score=32.03 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=27.1
Q ss_pred ceEEEecccc-------ccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWIC-------HNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vl-------h~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.|+|++.--. .+...+...++|+++++.|+|||++++.-
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 4888874211 11122335789999999999999998853
No 151
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.08 E-value=4.8 Score=29.06 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=53.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
.|+|+....+. +-....+-++-++..|+|||.-+-.-+.+-.....+ +. ....+.+.+.+++.++
T Consensus 260 ~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~----~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 260 YDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV----ENEMSIELSLEDLKRV 324 (369)
T ss_pred cceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC----cccccccccHHHHHHH
Confidence 48888885543 233467889999999999998776554433221100 00 1223457899999999
Q ss_pred HHHcCCceeEEEEc
Q 048707 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
.+.-||++.+-..+
T Consensus 325 ~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 325 ASHRGFEVEKERGI 338 (369)
T ss_pred HHhcCcEEEEeeee
Confidence 99999999876543
No 152
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.99 E-value=2.4 Score=27.57 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeec
Q 048707 26 VKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
.+.+.++.+.|||||.+++.=++-
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecC
Confidence 578889999999999999977654
No 153
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=1.3 Score=30.94 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=32.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
=.+++...|-++++++|...|.+++.+|.||-.+++
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 467788899999999999999999999999977766
No 154
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=88.38 E-value=0.82 Score=32.33 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
++...+|..+.+.|+|||+++|+-+..-++
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 446789999999999999999999876554
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=88.17 E-value=1.7 Score=29.52 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=25.7
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.+|+|++ +-..+.-...+..+.+.|+|||.|++-+.
T Consensus 144 ~fD~Vfi-----Da~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 144 EFDFAFV-----DADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCEEEE-----CCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 3588775 33345556889999999999997666443
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=87.85 E-value=1.4 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=25.6
Q ss_pred ceEEEecccc---ccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWIC---HNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vl---h~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++-..- +..+.--..+.++.+++.|+|||.+++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 5888876311 0011122357899999999999998885
No 157
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=87.71 E-value=0.91 Score=31.79 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=38.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHH
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKT 86 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (114)
.+|+|++.... ..+.++..++|.++.+.|+||++|++--. . + .+.+++-.. +.++.+
T Consensus 192 ~~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rsa---~---G-----lR~~LYp~v----------d~~~l~- 248 (276)
T PF03059_consen 192 EYDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRSA---H---G-----LRSFLYPVV----------DPEDLR- 248 (276)
T ss_dssp --SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE--------G-----GGGGSS--------------TGGGT-
T ss_pred cCCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEecc---h---h-----hHHHcCCCC----------ChHHCC-
Confidence 45888877755 34555678999999999999998888521 1 1 122222110 111111
Q ss_pred HHHHcCCceeEE-EEcCC-ceeEEEEEeCC
Q 048707 87 LAKAAGFQGFKV-VCSAF-STYIMEFLKKP 114 (114)
Q Consensus 87 ll~~aGf~~~~~-~~~~~-~~~ii~a~~~~ 114 (114)
||....+ .|.+. ..++|.++|++
T Consensus 249 -----gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 249 -----GFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp -----TEEEEEEE---TT---EEEEE----
T ss_pred -----CeEEEEEECCCCCceeEEEEEEecc
Confidence 9999655 45543 67999999874
No 158
>PLN02366 spermidine synthase
Probab=87.31 E-value=1.6 Score=30.96 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=25.8
Q ss_pred ceEEEeccccccCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 048707 8 ADVIFMKWICHNWSEE--ACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~--~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+|+|++-..-+.-+.. -..+.++.+++.|+|||.+++.
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 6999874332222211 1357899999999999998764
No 159
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=86.20 E-value=1.4 Score=33.08 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=32.2
Q ss_pred ceEEEeccccccCChHH-HHHHHHHHH-HhCCCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWSEEA-CVKILKNCY-EALPENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-~~~~l~~~~-~aL~pgG~lii~d~~ 48 (114)
+|+++++++||++.... ...+.++.+ .+.++|+.++|++.-
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 59999999999988543 445555554 688999999999973
No 160
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=86.20 E-value=1.8 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.4
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEEcCC
Q 048707 76 GREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
...++.++..+++++|||++.+.+.-..
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 5578999999999999999999877654
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=85.64 E-value=3.9 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..|.|+..--+-.++.....++|+++...|++||.++-...-
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 369999999888999999999999999999999999887764
No 162
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=84.79 E-value=1.5 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 26 VKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
.++|+++.+.|+|||++++..+...
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5799999999999999999886443
No 163
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=84.20 E-value=0.7 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
++....|.++.+.|+|||+++|+-+..-++
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 457789999999999999999998865444
No 164
>PRK03612 spermidine synthase; Provisional
Probab=84.20 E-value=2.1 Score=32.54 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=26.6
Q ss_pred cceEEEeccccccCChH---HHHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICHNWSEE---ACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~---~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|++...-...+.. -..+.++++++.|+|||.+++.-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 36999876432221111 12468999999999999988853
No 165
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=83.78 E-value=2 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 26 VKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
.++|+++.+.|+|||+|+...+...
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5699999999999999998776544
No 166
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=83.73 E-value=15 Score=27.55 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc-CC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS-AF 103 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 103 (114)
.+++++.+.+.|+|||.+++ |. +.+ -.++..+++++.||+.+++.+- .+
T Consensus 360 yr~Ii~~a~~~LkpgG~lil-Ei--G~~---------------------------Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLL-EH--GFD---------------------------QGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEE-EE--Ccc---------------------------HHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 34677777788888888654 22 111 1346678888899998777554 34
Q ss_pred ceeEEEEEe
Q 048707 104 STYIMEFLK 112 (114)
Q Consensus 104 ~~~ii~a~~ 112 (114)
..-++.+++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 334444543
No 167
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=83.31 E-value=11 Score=26.83 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=43.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTL 87 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (114)
+|+|+. |+| -+. ..++...+.+.++|||+++++-.+ .+. .+...+-
T Consensus 230 ~DvIVA-NIL---A~v-l~~La~~~~~~lkpgg~lIlSGIl-~~q----------------------------~~~V~~a 275 (300)
T COG2264 230 FDVIVA-NIL---AEV-LVELAPDIKRLLKPGGRLILSGIL-EDQ----------------------------AESVAEA 275 (300)
T ss_pred ccEEEe-hhh---HHH-HHHHHHHHHHHcCCCceEEEEeeh-HhH----------------------------HHHHHHH
Confidence 588874 444 232 458999999999999999986532 211 3344666
Q ss_pred HHHcCCceeEEEEcCC
Q 048707 88 AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 l~~aGf~~~~~~~~~~ 103 (114)
++++||.++++.....
T Consensus 276 ~~~~gf~v~~~~~~~e 291 (300)
T COG2264 276 YEQAGFEVVEVLEREE 291 (300)
T ss_pred HHhCCCeEeEEEecCC
Confidence 7778999988876644
No 168
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=83.16 E-value=1.7 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=25.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 18 HNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 18 h~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
-+++++- +++.++.++|+|||.+++.-+..+
T Consensus 169 LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 169 LDLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EcCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4778764 899999999999999998655433
No 169
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=80.65 E-value=5.6 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.392 Sum_probs=23.5
Q ss_pred cCCce-ecCHHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 048707 73 TTGGR-EMTEQDFKTLAKAAGFQGFKVVCSAFSTYIME 109 (114)
Q Consensus 73 ~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~ 109 (114)
+.+|+ ...-++++++|+++||+.++. .+.++.-+++
T Consensus 12 NVGG~nki~MaeLr~~l~~~Gf~~V~T-yi~SGNvvf~ 48 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALEDLGFTNVRT-YIQSGNVVFE 48 (137)
T ss_dssp SBTTBS---HHHHHHHHHHCT-EEEEE-ETTTTEEEEE
T ss_pred ecCCCCcccHHHHHHHHHHcCCCCceE-EEeeCCEEEe
Confidence 34553 468899999999999999884 4555555555
No 170
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=79.64 E-value=1.8 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=21.5
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 14 KWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 14 ~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
..-|||+.+.-..-+.++++++|..|..+=.
T Consensus 11 TGHLHHiEPKRVKvIVeEv~qaltegklLkm 41 (149)
T PF03574_consen 11 TGHLHHIEPKRVKVIVEEVRQALTEGKLLKM 41 (149)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHSSS-----
T ss_pred eccccccCchhhhhHHHHHHHHHhhhhHHHH
Confidence 3458999999999999999999999976643
No 171
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=79.62 E-value=2.5 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeec
Q 048707 26 VKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
.++|+++.+.|+|||+++...+..
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCC
Confidence 468999999999999999876544
No 172
>PRK11524 putative methyltransferase; Provisional
Probab=79.51 E-value=2.7 Score=29.31 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 048707 26 VKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~ 45 (114)
...+..+++.|+|||.++|.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 47899999999999999985
No 173
>PLN02476 O-methyltransferase
Probab=79.33 E-value=19 Score=25.32 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=26.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+|+|++ +-+..+-...+..+.+.|+|||.|++-+..
T Consensus 195 FD~VFI-----Da~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 195 YDFAFV-----DADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 476654 344566788999999999999987774443
No 174
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=79.07 E-value=3.3 Score=30.77 Aligned_cols=26 Identities=15% Similarity=0.525 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 26 VKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
.++|.++.+.|+|||.++.+.+....
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 67899999999999999888875443
No 175
>PRK13699 putative methylase; Provisional
Probab=78.99 E-value=2.6 Score=28.56 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 048707 25 CVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii 44 (114)
....+++++++|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45889999999999998876
No 176
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=78.68 E-value=4.7 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEEeC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLKK 113 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~~ 113 (114)
....++-|.++||.+.+....++-..++.|.|+
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 367899999999999888877777888888863
No 177
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.22 E-value=1.5 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 048707 25 CVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~ 45 (114)
....++++++.|+|||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 568899999999999999883
No 178
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=78.13 E-value=3.3 Score=28.92 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 048707 25 CVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii 44 (114)
..++++++.+.|+|||++++
T Consensus 230 ~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 46889999999999998875
No 179
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=77.91 E-value=3.4 Score=29.27 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 048707 25 CVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii 44 (114)
...+++++.+.|+|||++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 46899999999999999887
No 180
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.83 E-value=6.8 Score=26.39 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|.|+.....-..|+ .++ +.|+|||++++...
T Consensus 139 yD~I~Vtaaa~~vP~----~Ll----~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE----ALL----DQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH----HHH----HhcccCCEEEEEEc
Confidence 599999998877776 344 47999999999655
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=75.37 E-value=3.1 Score=31.41 Aligned_cols=23 Identities=17% Similarity=0.595 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCCCEEEEEeee
Q 048707 26 VKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
.+||.++.+.|+|||+|+-+.+.
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCC
Confidence 68999999999999999777663
No 182
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=74.70 E-value=2.4 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 23 EACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+.-.+.++++.+.|+|||.+.|+=.
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEe
Confidence 4467899999999999999999554
No 183
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=74.13 E-value=5.8 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 048707 26 VKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~ 45 (114)
.++++.+.+.|+|||++++.
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 58888889999999999874
No 184
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=73.86 E-value=4.1 Score=29.17 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=22.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 58888876554433 34567899999998854
No 185
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=72.62 E-value=2.6 Score=24.46 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=24.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|++++=. -|. .+....-++.+.+.|+|||.|++.|.
T Consensus 70 ~dli~iDg-~H~--~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 70 IDLIFIDG-DHS--YEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EEEEEEES------HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred EEEEEECC-CCC--HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 36665433 243 34467889999999999999998763
No 186
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=72.25 E-value=5.3 Score=29.23 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
..+||++..++|++||+++-+.+-..+.
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 3589999999999999999988765543
No 187
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=71.95 E-value=7.6 Score=24.79 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=24.1
Q ss_pred ceEEEeccccccCC--hHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWS--EEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~--d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|.++ -.|| .+++.-+|..+...|++||.|+|+-.
T Consensus 70 ~D~vv-----ly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 70 FDTVV-----LYWPKAKAEAQYLLANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp -SEEE-----EE--SSHHHHHHHHHHHHTTS-TT-EEEEEEE
T ss_pred CCEEE-----EEccCcHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 46554 4577 46788999999999999999999654
No 188
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.26 E-value=36 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=30.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
+|+|+.-..=-|-.+.+.-+=+..+.++++|+-.|++.|...+.
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 47777665444445555556667788899999888888865554
No 189
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=70.26 E-value=4 Score=21.56 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=10.0
Q ss_pred HHHHHcCCceeEE
Q 048707 86 TLAKAAGFQGFKV 98 (114)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (114)
.||++|||..-+-
T Consensus 31 ~WL~~aGF~~G~~ 43 (57)
T PF08845_consen 31 KWLEEAGFTIGDP 43 (57)
T ss_pred hhhHHhCCCCCCE
Confidence 6899999976443
No 190
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=69.93 E-value=7.1 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
..++|..+.+.|||||.|+-+.+....
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 358999999999999999998875543
No 191
>PLN02672 methionine S-methyltransferase
Probab=69.47 E-value=22 Score=29.91 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 048707 25 CVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii 44 (114)
.+++++++.+.|+|||.+++
T Consensus 257 yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 257 IARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 46788888888999887664
No 192
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=69.39 E-value=8.9 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=25.8
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCC-EEEEEee
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENG-KVIVAEC 47 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG-~lii~d~ 47 (114)
|..|+++++.++. +.....++++ ..+.|+..| .++|-|.
T Consensus 141 ~~~Dl~LagDlfy--~~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 141 PAFDLLLAGDLFY--NHTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cceeEEEeeceec--CchHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 4469999999986 4444568888 555565544 5554443
No 193
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=68.57 E-value=22 Score=26.11 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=30.9
Q ss_pred CCCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 3 VSIPK-ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 3 ~~~p~-~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
+++|. +|+|++..-= +.+.....|+.+.+.|+||+.|++.+...
T Consensus 101 ~~~~~~~d~vl~~~PK---~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 101 ADYPQQPGVVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred ccccCCCCEEEEEeCC---CHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 34555 4877754321 13557889999999999999988777643
No 194
>PF13592 HTH_33: Winged helix-turn helix
Probab=67.76 E-value=5.1 Score=21.08 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=21.9
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 76 GREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
|..++...+..+|.+.||+-.+..+.
T Consensus 19 gv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 19 GVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred CCEEcHHHHHHHHHHcCCccccCCCC
Confidence 66789999999999999998765544
No 195
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=67.74 E-value=20 Score=23.32 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 048707 80 TEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~ 100 (114)
|.....++++++|++++.+..
T Consensus 131 T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 131 TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred HHHHHHHHHHHCCCEEEEEEE
Confidence 566778899999988887744
No 196
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.08 E-value=24 Score=25.47 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=56.4
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch-hhhhhhhcchhhhhccCCc--eecCHHHHHH
Q 048707 10 VIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSL-ASKQVIHIDCIMLAHTTGG--REMTEQDFKT 86 (114)
Q Consensus 10 ~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~rt~~e~~~ 86 (114)
+++.--+|-++++++...+++-+....+ .+..++.|.+.+.++.+.- ...+. ..+ +...| ..-|.+..++
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg~vM~~nlk-~r~-----~~L~gle~y~s~Esq~~ 263 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFGKVMLANLK-RRG-----CPLHGLETYNSIESQRS 263 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHHHHHHHHHH-hcC-----CCCchhhhcccHHHHHH
Confidence 5566668889999999999999887654 6778888988766543311 00000 011 11112 2357899999
Q ss_pred HHHHcCCceeEEEEc
Q 048707 87 LAKAAGFQGFKVVCS 101 (114)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (114)
-+.++||+.+.+..+
T Consensus 264 Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 264 RFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHhcCCceeehhhH
Confidence 999999999887654
No 197
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=66.92 E-value=23 Score=20.68 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=27.5
Q ss_pred CcceEEEecccc-ccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 6 PKADVIFMKWIC-HNWSEEACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 6 p~~D~v~~~~vl-h~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
.+||+++++..- -+-.+.+....++++.+.=+|+.+|++.-.+...
T Consensus 35 e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~ 81 (98)
T PF00919_consen 35 EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQR 81 (98)
T ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCcccc
Confidence 458999988843 2222333444555544443478888887776443
No 198
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=66.83 E-value=25 Score=22.85 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEcC
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
-.+++.-+++.|.|||.|++ +.+.+.. . ...+ ..|..-...-+--.|-.+||+..+-+..+
T Consensus 72 E~~l~~~l~~~lspg~~lfV-eYv~DrE--T--------~~~l------qkG~~p~atrLGfeL~k~GftwfkdWY~P 132 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFV-EYVRDRE--T--------RYRL------QKGKPPVATRLGFELLKAGFTWFKDWYFP 132 (192)
T ss_pred HHHHHHHHHHhcCCCCceEE-EEEechh--H--------HHHH------HcCCCCccchhhHHHHhCcceeeeeeecc
Confidence 35788889999999999887 5543321 1 0110 12222223334455667999998876653
No 199
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=66.53 E-value=8.1 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCceeEE
Q 048707 82 QDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (114)
.|+..+|+++||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58899999999999754
No 200
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.04 E-value=6.3 Score=27.89 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=35.6
Q ss_pred eEEEecc-ccccCChHHHHHHHHHHHHhCCCCCEEEEEeeec--CCCCCCchhhhhhhhcchhhhhccCCceecCHHHHH
Q 048707 9 DVIFMKW-ICHNWSEEACVKILKNCYEALPENGKVIVAECIL--PVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 9 D~v~~~~-vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
|++++++ ..|.+.++ +.++++|+|.|++ |... -+-+.. ...--.+...
T Consensus 224 d~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKfmvdLrKE--------------------q~~~F~~kv~ 274 (289)
T PF14740_consen 224 DLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKFMVDLRKE--------------------QLQEFVKKVK 274 (289)
T ss_pred CEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-EcchhheeCCHH--------------------HHHHHHHHHH
Confidence 6655555 77777775 5567899976665 5421 111100 0011256788
Q ss_pred HHHHHcCCceeE
Q 048707 86 TLAKAAGFQGFK 97 (114)
Q Consensus 86 ~ll~~aGf~~~~ 97 (114)
+|.++|||+...
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998753
No 201
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=65.61 E-value=13 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCceecCHHHHHHHHHHcCCceeEEEEcCC
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
.+...||.++...++++|||++.+.+.-..
T Consensus 283 e~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~ 312 (319)
T TIGR03439 283 ECSGKYDKDEREKLCQSAGLKVVDVWTNED 312 (319)
T ss_pred EeeeCCCHHHHHHHHHHCCCeeeEEEECCC
Confidence 345679999999999999999999877653
No 202
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=64.80 E-value=11 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=27.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
.+|+|++ +-....-.+.+..+.+.|+|||.+++-+...+
T Consensus 132 ~fDliFI-----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 132 SFDLVFI-----DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred CccEEEE-----eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 3576663 44555567899999999999998777554433
No 203
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=64.79 E-value=4.1 Score=27.80 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=49.6
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCC-CCEEEEEeeecCCC------CCCchhhhhhhhcchhhhhccCCceecC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPE-NGKVIVAECILPVL------PDPSLASKQVIHIDCIMLAHTTGGREMT 80 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~p-gG~lii~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~rt 80 (114)
.|+|.+-++|..-.++ .++|..++.+|+| +|++++.= ++|-. ..+.+.. .-..+ ..+|+.+.
T Consensus 170 ~dli~clNlLDRc~~p--~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~~r------Pdn~L--e~~Gr~~e 238 (288)
T KOG3987|consen 170 LDLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLPLR------PDNLL--ENNGRSFE 238 (288)
T ss_pred eehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCcCC------chHHH--HhcCccHH
Confidence 4888888888765554 4899999999999 78887743 33321 1110000 00111 23454332
Q ss_pred --HHHHHHHHHHcCCceeEEEE
Q 048707 81 --EQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 81 --~~e~~~ll~~aGf~~~~~~~ 100 (114)
.+.+.++|+.|||.+.....
T Consensus 239 e~v~~~~e~lr~~g~~veawTr 260 (288)
T KOG3987|consen 239 EEVARFMELLRNCGYRVEAWTR 260 (288)
T ss_pred HHHHHHHHHHHhcCchhhhhhc
Confidence 24567889999999865443
No 204
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=64.28 E-value=19 Score=19.24 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeE
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFSTYI 107 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~i 107 (114)
..++..|+++.|++.+.+...++.+.+
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 567899999999998888886554433
No 205
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=64.23 E-value=13 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=28.0
Q ss_pred ceEEEeccccccCC--hHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWS--EEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~--d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+|+++ -.|| .+++...|.++.+.|+|||.|++.-..
T Consensus 77 ~d~~~-----~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 77 CDTLI-----YYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCEEE-----EECCCCHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 46555 3456 356889999999999999999997754
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=63.71 E-value=8.1 Score=26.91 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=24.0
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|+.=.. .+ ....+.++++|+|||.++..-
T Consensus 139 ~fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQE----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 3698885432 23 257788999999999998853
No 207
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=63.60 E-value=10 Score=28.83 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=34.4
Q ss_pred ceEEEeccccccCC-hHH-------HHHHHHHHHHhCCCCCEEEEEeee--cCCC
Q 048707 8 ADVIFMKWICHNWS-EEA-------CVKILKNCYEALPENGKVIVAECI--LPVL 52 (114)
Q Consensus 8 ~D~v~~~~vlh~~~-d~~-------~~~~l~~~~~aL~pgG~lii~d~~--~~~~ 52 (114)
.|+|+....++++- |++ +...+.++.+.|+|||+++.+-.. .+..
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 49999999999865 332 234688999999999999998874 4444
No 208
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=62.30 E-value=29 Score=23.78 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=47.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee--cCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHH
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI--LPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFK 85 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (114)
.|+++ ..|- .+++.+-++.++..-||+||.++|.=.. .+... . +.. .-++-.
T Consensus 144 VDvI~-~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~-~-p~~--------------------vf~~e~ 197 (229)
T PF01269_consen 144 VDVIF-QDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTA-D-PEE--------------------VFAEEV 197 (229)
T ss_dssp EEEEE-EE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS-S-HHH--------------------HHHHHH
T ss_pred ccEEE-ecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC-C-HHH--------------------HHHHHH
Confidence 47665 3443 2345667888888999999999885321 12211 1 100 122335
Q ss_pred HHHHHcCCceeEEEEcCC---ceeEEEEEeC
Q 048707 86 TLAKAAGFQGFKVVCSAF---STYIMEFLKK 113 (114)
Q Consensus 86 ~ll~~aGf~~~~~~~~~~---~~~ii~a~~~ 113 (114)
+.|++.||+..+...+.+ .+.++.++.+
T Consensus 198 ~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 198 KKLKEEGFKPLEQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp HHHHCTTCEEEEEEE-TTTSTTEEEEEEEE-
T ss_pred HHHHHcCCChheEeccCCCCCCcEEEEEEec
Confidence 566778999999888755 5577777654
No 209
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=62.29 E-value=20 Score=25.87 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=35.9
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
...|-|++..+=.-++|.+...++.++.+.+.||.+++.-..
T Consensus 326 g~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 326 GNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred CCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 345999999997777888899999999999999999988653
No 210
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=61.61 E-value=5.5 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=22.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|.|+........+. . ..+.|++||+|++.-
T Consensus 142 fD~I~v~~a~~~ip~----~----l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 142 FDRIIVTAAVPEIPE----A----LLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEEESSBBSS--H----H----HHHTEEEEEEEEEEE
T ss_pred cCEEEEeeccchHHH----H----HHHhcCCCcEEEEEE
Confidence 599999988865554 2 344789999999943
No 211
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=60.93 E-value=4.9 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 048707 26 VKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d 46 (114)
...|..+++.|+|||.|.+..
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred chHHHHHHHHcCCCCEEEEEe
Confidence 378999999999999997743
No 212
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=60.03 E-value=13 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 048707 26 VKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d 46 (114)
...|+.+.+.|+|||.|.+..
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEe
Confidence 368999999999999998854
No 213
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.14 E-value=21 Score=20.04 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCCCcc-eEEEeccccc--cCChHHHHHHHHHHHHhCCCCC
Q 048707 2 FVSIPKA-DVIFMKWICH--NWSEEACVKILKNCYEALPENG 40 (114)
Q Consensus 2 f~~~p~~-D~v~~~~vlh--~~~d~~~~~~l~~~~~aL~pgG 40 (114)
||.+|.+ |= ++-+++ .+.++...++++++.+.|.|+-
T Consensus 32 ~Eh~PSGID~--~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 32 YEHMPSGIDD--ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred EeeecCCCcc--EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 3567776 42 122222 2345456789999999999974
No 214
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=57.64 E-value=6.5 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCceeE
Q 048707 81 EQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~ 97 (114)
..||.++|..+|.+..+
T Consensus 28 P~eW~~ll~~sgis~~e 44 (46)
T cd01093 28 PEEWQRLLKSSGITKEE 44 (46)
T ss_pred CHHHHHHHHHcCCCHHH
Confidence 58999999999987543
No 215
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=56.97 E-value=24 Score=18.94 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 21 SEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 21 ~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+.++....+-+..+.|+||..+.++..
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~d 34 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVND 34 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEeC
Confidence 444455666677888999988888554
No 216
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=56.93 E-value=8.1 Score=25.29 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCCcceEEEeccccccCC-----hHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 4 SIPKADVIFMKWICHNWS-----EEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~-----d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+..+|+|+++++=..-- .+...+.|++. .+.||.|+++-
T Consensus 64 ~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~y---V~~GGgLlmig 108 (177)
T PF07090_consen 64 ELNRYDVVILSDVPANSLLKSRRSPNQLELLADY---VRDGGGLLMIG 108 (177)
T ss_dssp HHCT-SEEEEES--HHHHHT----HHHHHHHHHH---HHTT-EEEEE-
T ss_pred HHhcCCEEEEeCCCchhcccccCCHHHHHHHHHH---HHhCCEEEEEe
Confidence 455679999988643311 22233444444 44588888754
No 217
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=56.83 E-value=17 Score=23.60 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-..+++-+++.|.|||+|.| +.+.+ +.. ... + ..|..-...-+-..|..+||+.++-+..
T Consensus 65 E~~l~~~~~~~l~pg~~lfV-eY~~D--~eT------~~~-----L---~~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 65 EDELYKLFSRYLEPGGRLFV-EYVED--RET------RRQ-----L---QRGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp HHHHHHHHHTT----SEEEE-E-TT---HHH------HHH-----H---HTT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred HHHHHHHHHHHhhhcCeEEE-EEecC--HHH------HHH-----H---HcCCCcccchhHHHHHhCCcEEEeeeec
Confidence 36899999999999999998 44322 110 000 1 1222223345667788899999988654
No 218
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=56.22 E-value=13 Score=28.31 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 048707 25 CVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii 44 (114)
..++++++.+.|+|||.+++
T Consensus 248 ~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 45688999999999999876
No 219
>PRK06132 hypothetical protein; Provisional
Probab=54.94 E-value=14 Score=27.00 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCCEEEEEeeec
Q 048707 27 KILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
++.+++...|.||+.|+|.|.-.
T Consensus 322 ~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 322 DFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHhcCCCceEEEcCCCC
Confidence 68999999999999999999644
No 220
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=54.87 E-value=28 Score=23.94 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 3 VSIPK-ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 3 ~~~p~-~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+.+|. +|++++..--..+++.+. ..+.+.|..||++++.
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~----~~l~~yl~~GG~ll~~ 231 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEEL----YALDQYLMNGGKLLIL 231 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHH----HHHHHHHHcCCeEEEE
Confidence 35665 799999998888898764 3444466678888773
No 221
>PRK10556 hypothetical protein; Provisional
Probab=54.58 E-value=18 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..+|..+.|+.+||....+...
T Consensus 4 RPDEVArVLe~aGF~~D~vt~~ 25 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQK 25 (111)
T ss_pred ChHHHHHHHHhcCceEEEeech
Confidence 4689999999999999777544
No 222
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.46 E-value=8.5 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=21.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
+|.|..... +.++.+++..-|+|||+++|
T Consensus 163 YDaIhvGAa--------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 163 YDAIHVGAA--------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence 476665532 34677778889999999999
No 223
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=54.04 E-value=19 Score=19.22 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.0
Q ss_pred CceecCHHHHHHHHHHcCCcee
Q 048707 75 GGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
-|...+.+++.++|+..||...
T Consensus 15 lG~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 15 LGLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred HCCCCCHHHHHHHHHHCCCeEE
Confidence 3567889999999999999874
No 224
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=53.00 E-value=9.9 Score=20.93 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=10.3
Q ss_pred ecCHHHHHHHHHHcCCcee
Q 048707 78 EMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~ 96 (114)
..|.+|+.+.|++.||.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp --SHHHHHHHHHHTT-T--
T ss_pred cCCHHHHHHHHHHcCCCcc
Confidence 4567777777777777653
No 225
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=52.94 E-value=18 Score=19.59 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=16.2
Q ss_pred ceecCHHHHHHHHHHcCCceeEE
Q 048707 76 GREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 56788999999999999998764
No 226
>PLN02823 spermine synthase
Probab=52.82 E-value=19 Score=26.07 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=16.3
Q ss_pred HHHHH-HHHHhCCCCCEEEEE
Q 048707 26 VKILK-NCYEALPENGKVIVA 45 (114)
Q Consensus 26 ~~~l~-~~~~aL~pgG~lii~ 45 (114)
.+.++ .+.+.|+|||.+++.
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 36777 889999999988763
No 227
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=52.57 E-value=12 Score=21.16 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=17.9
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEcCC
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
.|...+.+++.+.|+..|++-+.-...+|
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~~~~pG 31 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSNPDRPG 31 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS--STT
T ss_pred CCcccCHHHHHHHHHHcCCCcCCCCCCCe
Confidence 46778999999999999999885444444
No 228
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.98 E-value=35 Score=18.01 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCceeEEEEcCC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
.+.+.+|+++.|++. .+....+
T Consensus 38 ~~~i~~~~~~~G~~~-~~~~~~~ 59 (67)
T cd03421 38 KENVSRFAESRGYEV-SVEEKGG 59 (67)
T ss_pred HHHHHHHHHHcCCEE-EEEecCC
Confidence 457788999999999 6555555
No 229
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=51.75 E-value=26 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 048707 26 VKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d 46 (114)
...++.+.+.|+++|.|.|.-
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 456777888999999999954
No 230
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=51.46 E-value=4.2 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhC-CCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEAL-PENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL-~pgG~lii~d~~ 48 (114)
+|+|+ -|++++- ..+..+.++| +|||++.+.-+.
T Consensus 114 ~Davf-----LDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 114 FDAVF-----LDLPDPW--EAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEE-----EESSSGG--GGHHHHHHHE-EEEEEEEEEESS
T ss_pred ccEEE-----EeCCCHH--HHHHHHHHHHhcCCceEEEECCC
Confidence 47554 4778764 7999999999 899999886553
No 231
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.08 E-value=36 Score=17.86 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCC
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
+..++.+|+++.|++.......++
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCC
Confidence 366788999999999877766654
No 232
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=51.07 E-value=22 Score=25.08 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 048707 26 VKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~ 45 (114)
.+..+.|+++|+|+|.++..
T Consensus 170 ~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 58999999999999999987
No 233
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=50.93 E-value=18 Score=23.34 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=36.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeE
Q 048707 18 HNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 18 h~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
.+|......++.+++.+.++||+.|+++|. +.... + ......+...|++.||+.+.
T Consensus 131 ~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~---~~~~~-----------------t----~~~l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 131 RDWKNPGVESIVDRVVKNTKPGDIILLHAS---DSAKQ-----------------T----VKALPTIIKKLKEKGYEFVT 186 (191)
T ss_pred CccCCCCHHHHHHHHHhcCCCCCEEEEeCC---CCcHh-----------------H----HHHHHHHHHHHHHCCCEEEE
Confidence 456544456788999999999988888762 11100 0 01245677888888988765
Q ss_pred E
Q 048707 98 V 98 (114)
Q Consensus 98 ~ 98 (114)
+
T Consensus 187 l 187 (191)
T TIGR02764 187 I 187 (191)
T ss_pred H
Confidence 4
No 234
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=50.83 E-value=30 Score=21.58 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=31.2
Q ss_pred eEEEeccccc--cCChHHHHHHHHHHHHhCCC-CCEEEEEee
Q 048707 9 DVIFMKWICH--NWSEEACVKILKNCYEALPE-NGKVIVAEC 47 (114)
Q Consensus 9 D~v~~~~vlh--~~~d~~~~~~l~~~~~aL~p-gG~lii~d~ 47 (114)
.++|++.+=+ -.++.+...+...+.+.|+. |+.++++|.
T Consensus 42 ~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 42 PVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred cEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec
Confidence 5889988864 46677778888999999988 667888896
No 235
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=50.54 E-value=8.3 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=25.9
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCCEE
Q 048707 12 FMKWICHNWSEEACVKILKNCYEALPENGKV 42 (114)
Q Consensus 12 ~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~l 42 (114)
=+..-|||+.+..+.-|+++++++|..|..|
T Consensus 62 RMTGHLHHiEPKRVKvIVeEv~qaltegklL 92 (299)
T PRK13245 62 RMTGHLHHLEPKRVKIIVEEVRQALTEGKLL 92 (299)
T ss_pred eeeccccccChhhhhHHHHHHHHHHhhhhHH
Confidence 3456689999999999999999999998543
No 236
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=50.35 E-value=27 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 22 EEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+..++|.++-+.++||..|+|+|.
T Consensus 218 ~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 218 ISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 34567999999999999999999996
No 237
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=50.25 E-value=54 Score=26.78 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+.|+++++.|+++|++++.=.
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y~a 589 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTYYA 589 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEe
Confidence 45788999999999999998443
No 238
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=50.20 E-value=28 Score=20.01 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=36.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhc-cCCceecCHHHHHHHHHHcCCc
Q 048707 18 HNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAH-TTGGREMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 18 h~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~rt~~e~~~ll~~aGf~ 94 (114)
+..+++++.+++. +.|.+-|...|.+.-.-....++..... +...-+-.+.+. ...+..++.++-.+++++.||+
T Consensus 17 ~~l~~~e~lr~ia-~~Rl~~P~a~I~la~gr~~~~~~~~~~~-~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 17 PPLSDEEFLRIIA-AFRLLLPEAGIRLAGGREALLRDLQPLT-FMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ----HHHHHHHHH-HHHHHSTTSEEEEECCHHHCSCCHHHHH-HCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHH-HHHHHCCCcceEeecCccccCHHHHHHH-HhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 4578888888888 5666777777777554222111110000 000011111100 0112247889999999999985
No 239
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=50.10 E-value=28 Score=23.72 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 24 ACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
.+..+++++.+.++.||.++++|.-.
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~ 197 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGY 197 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCC
Confidence 46789999999999889999999866
No 240
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=50.09 E-value=32 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=27.0
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|++++..-= +..+.+..|.++.+.++|||.|++.-.
T Consensus 38 ~d~~l~~~pK---~~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 38 FDAVLLYWPK---HKAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCEEEEEccC---chHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 4666543322 145678899999999999999999654
No 241
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=49.65 E-value=9.6 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=25.4
Q ss_pred cceEEEeccccccCChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 048707 7 KADVIFMKWICHNWSEEA--CVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~--~~~~l~~~~~aL~pgG~lii~d 46 (114)
.+|+|++-..--.-+... ..+.++.+++.|+|||.+++.-
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 368887532211111111 2579999999999999999865
No 242
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=49.60 E-value=22 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCceeE
Q 048707 81 EQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~ 97 (114)
.+.|+..|+++||++.-
T Consensus 81 ~~SW~~~l~~~g~~v~~ 97 (103)
T cd03413 81 PDSWKSILEAAGIKVET 97 (103)
T ss_pred chhHHHHHHHCCCeeEE
Confidence 56899999999998853
No 243
>PRK04280 arginine repressor; Provisional
Probab=49.52 E-value=18 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=15.3
Q ss_pred ecCHHHHHHHHHHcCCceeE
Q 048707 78 EMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (114)
..|.+|+.+.|++.||.+.+
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred CCCHHHHHHHHHHcCCCeeh
Confidence 45788888888888887644
No 244
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=49.47 E-value=33 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=22.1
Q ss_pred cCChHHHHHHHHHHHH-------------hCCCCCEEEEEeeecCCC
Q 048707 19 NWSEEACVKILKNCYE-------------ALPENGKVIVAECILPVL 52 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~-------------aL~pgG~lii~d~~~~~~ 52 (114)
.+|.+...+.+++... ...|||.-+|+|...+..
T Consensus 60 ~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~gP~GvaiiVe~lTDN~ 106 (238)
T TIGR01033 60 NMPKDNIERAIKKGAGELDGSNYEEITYEGYAPGGVAIIVECLTDNK 106 (238)
T ss_pred CCCHHHHHHHHHHhcCCCCccceEEEEEEEEcCCceEEEEEEecCCH
Confidence 4566656666666542 234889999999876643
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.21 E-value=36 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=28.4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
.|.|+.+.++ +=|+....+.+-+...|+|.|+-++
T Consensus 104 FDiIlaADCl--FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 104 FDIILAADCL--FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ccEEEeccch--hHHHHHHHHHHHHHHHhCcccceeE
Confidence 5999999987 3455567899999999999998555
No 246
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=49.13 E-value=36 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCcceEEEeccccc-cCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 5 IPKADVIFMKWICH-NWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 5 ~p~~D~v~~~~vlh-~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+..+|++++...-. .++++. .+.|++ .++.||.++.+.
T Consensus 50 L~~~Dvvv~~~~~~~~l~~~~-~~al~~---~v~~Ggglv~lH 88 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDELTDEQ-RAALRD---YVENGGGLVGLH 88 (217)
T ss_dssp HCT-SEEEEE-SSCCGS-HHH-HHHHHH---HHHTT-EEEEEG
T ss_pred hcCCCEEEEECCCCCcCCHHH-HHHHHH---HHHcCCCEEEEc
Confidence 44579999988875 366654 344443 444588887777
No 247
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=48.60 E-value=35 Score=19.73 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=20.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.|++++-. .+.++. ..|..+...++.||.+++.-+
T Consensus 12 ~~~~i~d~-~~g~~p----nal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 12 FDLLIFDA-FEGFDP----NALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp BSSEEEE--SS---H----HHHHHHHTTB-TT-EEEEEES
T ss_pred cCEEEEEc-cCCCCH----HHHHHHhcceecCeEEEEEcC
Confidence 36555433 455655 578888999999999998654
No 248
>PRK13605 endoribonuclease SymE; Provisional
Probab=48.09 E-value=26 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=16.4
Q ss_pred HHHHHHcCCceeEEEEc--CCceeEEEEE
Q 048707 85 KTLAKAAGFQGFKVVCS--AFSTYIMEFL 111 (114)
Q Consensus 85 ~~ll~~aGf~~~~~~~~--~~~~~ii~a~ 111 (114)
-.||++|||..-.-..+ ..+.-+|.+.
T Consensus 44 G~WLeeAGF~tG~~V~V~V~~G~LVIt~~ 72 (113)
T PRK13605 44 GQWLEAAGFATGTAVDVRVMEGCIVLTAQ 72 (113)
T ss_pred chhHHhhCCCCCCeEEEEEeCCEEEEEeC
Confidence 36999999998544332 3344455443
No 249
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.51 E-value=49 Score=24.55 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=26.2
Q ss_pred cceEEEeccc-cccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 7 KADVIFMKWI-CHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 7 ~~D~v~~~~v-lh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+||+|+++.+ +-+-.+.+..+.++++.+.-+|+..|++.-++
T Consensus 27 ~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~ 69 (420)
T PRK14339 27 EADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCT 69 (420)
T ss_pred cCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCc
Confidence 4899998874 33333444555566665546677777776653
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=47.19 E-value=7.9 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhC----CCCCEEEEEeeecC
Q 048707 25 CVKILKNCYEAL----PENGKVIVAECILP 50 (114)
Q Consensus 25 ~~~~l~~~~~aL----~pgG~lii~d~~~~ 50 (114)
..++|+++.+.+ +|||+++-.-+-..
T Consensus 194 Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 194 QREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred HHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 358999999999 99999999887543
No 251
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=47.02 E-value=18 Score=19.31 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=18.5
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 10 VIFMKWICHNWSE-EACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 10 ~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
++++..- ..+++ ++..++ .+-+..||+|+|.+
T Consensus 38 ll~i~~~-~~~~~~~~~~~l----~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 38 LLVIGPD-LRLSEPEEAEAL----LEWVEAGNTLVLAA 70 (70)
T ss_pred EEEEeCC-CCCCchHHHHHH----HHHHHcCCEEEEeC
Confidence 4444444 34664 554444 34556799999863
No 252
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.93 E-value=46 Score=17.82 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCce
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFST 105 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~ 105 (114)
.+++.+|+++.|++.+.....++.+
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~~~ 63 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDEPY 63 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCCEE
Confidence 5677888999999998877754433
No 253
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.72 E-value=27 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.1
Q ss_pred cCHHHHHHHHHHcCCceeE
Q 048707 79 MTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~ 97 (114)
-+.++|...|+++||++.-
T Consensus 216 ddedswk~il~~~G~~v~~ 234 (265)
T COG4822 216 DDEDSWKNILEKNGFKVEV 234 (265)
T ss_pred cchHHHHHHHHhCCceeEE
Confidence 4668999999999999843
No 254
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=46.58 E-value=12 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCEEEEEeeec
Q 048707 27 KILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
..++.+.+.|+|||+++++-...
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 58889999999999999977643
No 255
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=46.49 E-value=16 Score=23.43 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.5
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCC
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALP 37 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~ 37 (114)
|++++.+++-|++-++.+++.+.-|++.|
T Consensus 107 d~vvi~svfv~~~a~d~~kiY~ynY~A~k 135 (170)
T COG1795 107 DVVVIVSVFVHPEAEDKRKIYQYNYGATK 135 (170)
T ss_pred CEEEEEEeEeCcccccHHHHHHHhHHHHH
Confidence 89999999999998888899888777644
No 256
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=46.30 E-value=75 Score=20.54 Aligned_cols=7 Identities=14% Similarity=0.672 Sum_probs=3.2
Q ss_pred CEEEEEe
Q 048707 40 GKVIVAE 46 (114)
Q Consensus 40 G~lii~d 46 (114)
..+++.|
T Consensus 108 p~llLlD 114 (176)
T cd03238 108 GTLFILD 114 (176)
T ss_pred CCEEEEe
Confidence 4444444
No 257
>COG1438 ArgR Arginine repressor [Transcription]
Probab=46.18 E-value=21 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=14.0
Q ss_pred eecCHHHHHHHHHHcCCceeE
Q 048707 77 REMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~ 97 (114)
+..|.+|+.+.|++.||.+.+
T Consensus 19 ~i~TQ~Elv~~L~~~Gi~vTQ 39 (150)
T COG1438 19 KISTQEELVELLQEEGIEVTQ 39 (150)
T ss_pred CCCCHHHHHHHHHHcCCeEeh
Confidence 345777777777777777543
No 258
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=45.55 E-value=19 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCceeEEE
Q 048707 81 EQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~ 99 (114)
+.|+.++|.+.||.+++.-
T Consensus 3 Erel~~~L~~~Gf~v~R~~ 21 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAA 21 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHhCCcEEEEec
Confidence 5688999999999998753
No 259
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=45.53 E-value=52 Score=19.77 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHhCCCC----CEEEEEee
Q 048707 20 WSEEACVKILKNCYEALPEN----GKVIVAEC 47 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pg----G~lii~d~ 47 (114)
.+|++..++++-+.++.+.| |++++++.
T Consensus 65 v~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10858 65 VPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 46777788888888777765 99999874
No 260
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=45.22 E-value=25 Score=19.96 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=19.8
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEc
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+.+..+.++.|++.||+++.....
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCc
Confidence 456789999999999999887544
No 261
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=45.21 E-value=28 Score=19.46 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCC-CEEEEEee
Q 048707 24 ACVKILKNCYEALPEN-GKVIVAEC 47 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pg-G~lii~d~ 47 (114)
...++.+.+.+||..| |.|-+.|.
T Consensus 21 s~dev~~~v~~Al~~~~~~l~LtD~ 45 (74)
T PF11305_consen 21 SADEVEAAVTDALADGSGVLTLTDE 45 (74)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEeC
Confidence 3457888999999999 88887774
No 262
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=45.02 E-value=38 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=24.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+|+|++- -+.+.-...+..+.+.|+|||.|++ |.+
T Consensus 157 fD~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 157 FDFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred ccEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 5766643 3355566788888899999998666 543
No 263
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=44.67 E-value=14 Score=16.08 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=9.0
Q ss_pred CCCCEEEEEee
Q 048707 37 PENGKVIVAEC 47 (114)
Q Consensus 37 ~pgG~lii~d~ 47 (114)
.++|.|+|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 47899999984
No 264
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=44.36 E-value=58 Score=18.31 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFSTYIME 109 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ii~ 109 (114)
++-+...+..||++.+.+...+....+..
T Consensus 8 re~l~k~~~~agis~IeI~Rt~~~i~I~I 36 (81)
T cd02413 8 NEFLTRELAEDGYSGVEVRVTPTRTEIII 36 (81)
T ss_pred HHHHHHHHHhCCeeeEEEEEcCCeEEEEE
Confidence 34556678899999999988765444433
No 265
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=44.35 E-value=41 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 24 ACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+-..++..+.+.|+|||.++++.+.
T Consensus 314 dy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 314 DYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3568999999999999999998763
No 266
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=44.18 E-value=40 Score=18.37 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.9
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 048707 79 MTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (114)
.+..|....|+..||..++..
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEee
Confidence 467899999999999998763
No 267
>PF15585 Imm46: Immunity protein 46
Probab=44.15 E-value=61 Score=20.18 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=23.3
Q ss_pred EEEeccccccCCh---HHHHHHHHHHHHhCCCC--CEEEEEee
Q 048707 10 VIFMKWICHNWSE---EACVKILKNCYEALPEN--GKVIVAEC 47 (114)
Q Consensus 10 ~v~~~~vlh~~~d---~~~~~~l~~~~~aL~pg--G~lii~d~ 47 (114)
.++-...+++-.. ++...+++++.+ +.|| |.|++.|-
T Consensus 52 ~~l~~~g~~NHr~~~~~eii~lf~~i~e-~aPGSYGlLy~rDD 93 (129)
T PF15585_consen 52 YFLHFGGLSNHRGQEAPEIIELFERIAE-IAPGSYGLLYIRDD 93 (129)
T ss_pred EEEEEccccCCCccchHHHHHHHHHHHH-hCCCceeEEEEecC
Confidence 3333344444443 447888888887 4677 78888764
No 268
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=43.58 E-value=29 Score=19.59 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.+++..+.+++-++|.+|||...+-..+
T Consensus 54 ~GaKH~~q~~Lnq~L~~Ag~~~LK~KEI 81 (84)
T PF13319_consen 54 IGAKHFDQEELNQRLIDAGWEGLKDKEI 81 (84)
T ss_pred hccccCCHHHHHHHHHHcCccccchhhh
Confidence 4566788999999999999987665443
No 269
>PRK00110 hypothetical protein; Validated
Probab=43.39 E-value=52 Score=22.77 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred cCChHHHHHHHHHHHH-------------hCCCCCEEEEEeeecCCC
Q 048707 19 NWSEEACVKILKNCYE-------------ALPENGKVIVAECILPVL 52 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~-------------aL~pgG~lii~d~~~~~~ 52 (114)
.+|.+...+.+++... ...|||.-+|+|...+..
T Consensus 60 nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~gP~GvaiiVe~lTDN~ 106 (245)
T PRK00110 60 NMPKDNIERAIKKGTGELDGANYEEIRYEGYGPGGVAIIVEALTDNR 106 (245)
T ss_pred CCCHHHHHHHHHHhcCCCCccceEEEEEEEEcCCCeEEEEEEecCCH
Confidence 4566666666666542 335889999999876653
No 270
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.37 E-value=38 Score=19.80 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEEeCC
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLKKP 114 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~~~ 114 (114)
-.|....-+++.+.+++.|-.+..+...-.+..++|..++|
T Consensus 55 IeG~~ldydei~~~iE~~Gg~IHSiDevvaGk~ivE~~~t~ 95 (97)
T COG1888 55 IEGTNLDYDEIEEVIEELGGAIHSIDEVVAGKRIVEEVRTP 95 (97)
T ss_pred EEcCCCCHHHHHHHHHHcCCeeeehhhhhhcceeeeccccC
Confidence 34667788999999999998887777777778888887765
No 271
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.23 E-value=54 Score=17.59 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCceeEEEEcCC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
...+.+|+++.|+++......++
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~~ 61 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSGP 61 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 56778899999999987766554
No 272
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.08 E-value=25 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.8
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
+++.-|..|...+|+.|||+...
T Consensus 112 D~k~Vtk~evvnLLESAGFSrsN 134 (1200)
T KOG0964|consen 112 DNKMVTKGEVVNLLESAGFSRSN 134 (1200)
T ss_pred ccccccHHHHHHHHHhcCcccCC
Confidence 46678999999999999999854
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=42.74 E-value=33 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCCEEEEEee
Q 048707 26 VKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~ 47 (114)
...++.+.+.|+|+|++++...
T Consensus 286 ~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 286 PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred hHHHHHHHHHhccCCEEEEEcC
Confidence 3578889999999999999854
No 274
>PRK09213 pur operon repressor; Provisional
Probab=42.27 E-value=93 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.0
Q ss_pred HhCCCCCEEEEEeeecCCC
Q 048707 34 EALPENGKVIVAECILPVL 52 (114)
Q Consensus 34 ~aL~pgG~lii~d~~~~~~ 52 (114)
++|++|.+++|+|-+....
T Consensus 191 ~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred hhcCCcCEEEEEeeecccC
Confidence 6788999999998776543
No 275
>PRK06852 aldolase; Validated
Probab=42.18 E-value=28 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 19 NWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|.+++....+.++.+.++..|+++|+=.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~sGr~~ivp~ 38 (304)
T PRK06852 10 DVPEEMREEYIENYLEITKGTGRLMLFAG 38 (304)
T ss_pred cCChhcChhHHHHHHHhhCCCCCEEEEec
Confidence 57777778999999999999999999653
No 276
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=40.82 E-value=65 Score=17.85 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=23.8
Q ss_pred ecCHHHHHHHHHHcCCceeEEEEcCCceeEEEEE
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEFL 111 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~ 111 (114)
..+.++..+.+++.|+++.++.....+.+=+++.
T Consensus 28 ~~~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~ 61 (83)
T PF13670_consen 28 WLSIEQAVAKLEAQGYQVREVEFDDDGCYEVEAR 61 (83)
T ss_pred cCCHHHHHHHHHhcCCceEEEEEcCCCEEEEEEE
Confidence 4479999999999999776666634444444443
No 277
>PRK12378 hypothetical protein; Provisional
Probab=40.80 E-value=25 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=22.6
Q ss_pred cCChHHHHHHHHHHH------------HhCCCCCEEEEEeeecCCC
Q 048707 19 NWSEEACVKILKNCY------------EALPENGKVIVAECILPVL 52 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~------------~aL~pgG~lii~d~~~~~~ 52 (114)
.+|.+...+.+++.. +...|||.-+|+|...+..
T Consensus 58 nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~ 103 (235)
T PRK12378 58 NVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNV 103 (235)
T ss_pred CCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCH
Confidence 456666666666654 2335899999999876653
No 278
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=40.77 E-value=1.2e+02 Score=20.72 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=41.1
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCcee-------
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGRE------- 78 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------- 78 (114)
+.+|+.++|..+ +|..+.++|+| |.+++ .+.|.-..+.. . . ..+|..
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~--L~KPqFE~~~~------~-----~--~~~giv~~~~~~~ 195 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP-NDLTL--LFKPQFEAGRE------K-----K--NKKGVVRDKEAIA 195 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc-CeEEE--EcChHhhhcHh------h-----c--CcCCeecCHHHHH
Confidence 345877777654 47888899999 66655 22232211110 0 0 112322
Q ss_pred cCHHHHHHHHHHcCCceeEEEEc
Q 048707 79 MTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.-.++...++.+.||+.....+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 196 LALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred HHHHHHHHHHHcCCCeEeeEEEC
Confidence 33467778888899998877654
No 279
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=40.49 E-value=38 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
-..+++.+.+.|+|||.++.+.+
T Consensus 318 y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 318 YKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Confidence 34566778899999999998764
No 280
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=40.35 E-value=66 Score=19.89 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+..+|++++-++.+ ++++ ..+++.+-.+.||.++.-
T Consensus 51 l~~y~~vi~P~~~~-~~~~----~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 51 LSGYKLVVLPDLYL-LSDA----TAAALRAYVENGGTLVAG 86 (154)
T ss_pred cccCCEEEECchhc-CCHH----HHHHHHHHHHCCCEEEEe
Confidence 33468999988865 4553 344444455569966653
No 281
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=40.26 E-value=22 Score=24.99 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=28.7
Q ss_pred cCCceecCHHHHHHHHHHcCCceeEEEEc-CCceeEEEEE
Q 048707 73 TTGGREMTEQDFKTLAKAAGFQGFKVVCS-AFSTYIMEFL 111 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~ii~a~ 111 (114)
+...+.++..+.++.++++||..++.+.- ...++++.+.
T Consensus 281 tE~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l~~ 320 (321)
T COG4301 281 TEISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSLAA 320 (321)
T ss_pred hhhhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhheec
Confidence 34466788899999999999999987654 3455555544
No 282
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=40.25 E-value=12 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 25 CVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
....|..++..|.|||.|++-|...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 5789999999999999999977543
No 283
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=40.01 E-value=98 Score=21.87 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCEEEEEeee-cCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCcee
Q 048707 39 NGKVIVAECI-LPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 39 gG~lii~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
+|.|++.|-+ .+++ .++++......-..-..++.+-++.||.+.|+...
T Consensus 202 ~g~ivL~DEi~TPDs---------~R~W~~~~~~~g~~~~~lDK~~~R~~l~~~~~~~~ 251 (279)
T cd01414 202 NGEIILIDEVLTPDS---------SRFWPADSYEPGKEQPSFDKQFVRDWLEASGWDKQ 251 (279)
T ss_pred CCcEEEEEecCCCCc---------ceeeeccccccCCCccccChHHHHHHHHhcCCCcc
Confidence 5888888877 4443 12333221100001135788999999999998753
No 284
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=39.26 E-value=50 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 22 EEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
++--.+.|+.+.+.|++||++++.-.
T Consensus 286 ~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 286 DELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 34467899999999999999988544
No 285
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=39.24 E-value=26 Score=20.94 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 048707 80 TEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~ 100 (114)
..+|..+.|+.+||....+..
T Consensus 4 rpdeva~vle~~gf~~d~v~~ 24 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTD 24 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEET
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 368999999999999977654
No 286
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=39.23 E-value=64 Score=17.27 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCc
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFS 104 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~ 104 (114)
..++.+|.++.|++.......++.
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~~~ 62 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEKGK 62 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCE
Confidence 567789999999999877665443
No 287
>PRK04140 hypothetical protein; Provisional
Probab=39.01 E-value=54 Score=23.62 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHcCCceeEEEEc-CCceeEE
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCS-AFSTYIM 108 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~-~~~~~ii 108 (114)
-.++..++|.++||.+...... +..+.++
T Consensus 5 li~~v~~~L~~~gf~vs~~~~~~~~~fdi~ 34 (317)
T PRK04140 5 LISEVIALLEDAGFKVSDRCPIRPSCFDLV 34 (317)
T ss_pred HHHHHHHHHHHCCCEEEeeccCCCceEEEE
Confidence 3578899999999999873333 4456665
No 288
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=38.92 E-value=31 Score=20.06 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.6
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 17 CHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 17 lh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
||.++..-...-|+.+.+.+.||-.|++++
T Consensus 2 Lhtv~~Sp~~~~l~~~l~~~~~~D~iLLie 31 (95)
T PRK13510 2 LHTLSRSPWLTDFAALLRLLKEGDDLLLLQ 31 (95)
T ss_pred eeeecCCCchhHHHHHHHhcCCCCEEEEeh
Confidence 455443222347888899999986666664
No 289
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=38.56 E-value=42 Score=25.63 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|.||+|++. .||.....+-+++...|+||..|...+.
T Consensus 95 ~~~ADvVviL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 95 IPQADLVINL-----TPDKQHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HHhCCEEEEc-----CChHHHHHHHHHHHhhCCCCCEEEecCC
Confidence 4557887743 4666667788999999999999988774
No 290
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=38.40 E-value=45 Score=23.03 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred cCChHHHHHHHHHHH-------------HhCCCCCEEEEEeeecCCCCCCchhhhhhhhcc---hhh--------h-h--
Q 048707 19 NWSEEACVKILKNCY-------------EALPENGKVIVAECILPVLPDPSLASKQVIHID---CIM--------L-A-- 71 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~-------------~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~---~~~--------~-~-- 71 (114)
.+|.+...+.+++.. +.-.|||.-+|+|.+.+..... .+..+..+. -.| + .
T Consensus 60 nmPkd~IerAI~ka~G~~d~~~~~ei~YEGygP~GvaiiVe~LTDN~NRT--as~vR~~F~K~GG~lg~~GSV~~mF~~k 137 (241)
T COG0217 60 NMPKDNIERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRT--ASNVRSAFNKNGGNLGEPGSVSYMFDRK 137 (241)
T ss_pred CCCHHHHHHHHHhccCCCCccceEEEEEEeECCCceEEEEEeccCCcchh--HHHHHHHHHhcCCccCCCceEEEEEecc
Confidence 455555555555544 3456899999999876654221 111111111 000 0 0
Q ss_pred --ccCCceecCHHHHHHHHHHcCCceeEEE
Q 048707 72 --HTTGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 72 --~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
....+...+.+++.+.+-++|-..+...
T Consensus 138 Gvi~~~~~~~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 138 GVIVVEKNEIDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCchhhhcC
Confidence 0111223688999999999998877655
No 291
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=38.39 E-value=8.3 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.2
Q ss_pred ecCHHHHHHHHHHcCCceeE
Q 048707 78 EMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (114)
..+.+++.+..-++|-..++
T Consensus 142 ~~~~d~~~e~aIe~GaeDve 161 (234)
T PF01709_consen 142 DLDEDELMEDAIEAGAEDVE 161 (234)
T ss_dssp CS-HHHHHHHHHHHTESEEE
T ss_pred CCChHHHHHHHHhCCCcEee
Confidence 45667788887788877776
No 292
>PRK11018 hypothetical protein; Provisional
Probab=38.33 E-value=72 Score=17.63 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCceeEEEEcCC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
...+.+|+++.|++++......+
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~g 70 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDGP 70 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 55778899999999987766544
No 293
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=38.28 E-value=83 Score=21.01 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHcCCceeEEEEc---CCceeEEEEEeC
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCS---AFSTYIMEFLKK 113 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~---~~~~~ii~a~~~ 113 (114)
....+++||.+.||.+.+-.-+ +..+.|+.|.+.
T Consensus 104 ~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 104 HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERG 140 (205)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeC
Confidence 5689999999999999865433 335567777654
No 294
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=38.06 E-value=70 Score=17.41 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHHHHhCCCC-CEEEEEee
Q 048707 19 NWSEEACVKILKNCYEALPEN-GKVIVAEC 47 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pg-G~lii~d~ 47 (114)
..+..+..++.+++.+.+.|+ +.+.|...
T Consensus 38 ~~~~~~~~~l~~~l~~~i~~~~d~i~i~~l 67 (78)
T PF09827_consen 38 NLTNAELRKLRRELEKLIDPDEDSIRIYPL 67 (78)
T ss_dssp EE-HHHHHHHHHHHHHHSCTTTCEEEEEEE
T ss_pred EcCHHHHHHHHHHHHhhCCCCCCEEEEEEe
Confidence 346677789999999999998 99888765
No 295
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=38.04 E-value=83 Score=18.27 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCC-CCEEEEEeee
Q 048707 4 SIPKADVIFMKWICHNWSEEACVKILKNCYEALPE-NGKVIVAECI 48 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~p-gG~lii~d~~ 48 (114)
+.-.+.++++-+. ..++++...++.++...++. ||.++-.|..
T Consensus 4 ~mr~YE~~~Il~p--~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~w 47 (97)
T CHL00123 4 KLNKYETMYLLKP--DLNEEELLKWIENYKKLLRKRGAKNISVQNR 47 (97)
T ss_pred cccceeEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 3444544444333 35888899999999999977 6777776653
No 296
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=37.86 E-value=20 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 048707 24 ACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+-.++++++.+.|+|||.|+.+-+
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 456899999999999999987665
No 297
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=37.85 E-value=33 Score=23.90 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=35.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeE
Q 048707 18 HNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 18 h~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
.+|.......+.+++.+.++||+.|+++|.. .. . ....++...|++.||+.+.
T Consensus 210 ~Dw~~~~~~~i~~~v~~~~~~G~IILmHd~~------~T-~--------------------~aL~~iI~~Lk~kGy~fvt 262 (268)
T TIGR02873 210 IDWKNPSPSVMVNRVLSKIHPGAMVLMHPTA------SS-T--------------------EGLEEMITIIKEKGYKIGT 262 (268)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCcEEEEcCCc------cH-H--------------------HHHHHHHHHHHHCCCEEEe
Confidence 5665444567888888889998888776531 00 0 0145667778888887765
Q ss_pred E
Q 048707 98 V 98 (114)
Q Consensus 98 ~ 98 (114)
+
T Consensus 263 l 263 (268)
T TIGR02873 263 I 263 (268)
T ss_pred H
Confidence 4
No 298
>PRK05066 arginine repressor; Provisional
Probab=37.58 E-value=26 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=13.1
Q ss_pred eecCHHHHHHHHHHcCCc
Q 048707 77 REMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~ 94 (114)
...|.+|+.+.|++.||.
T Consensus 22 ~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 22 KFGSQGEIVTALQEQGFD 39 (156)
T ss_pred CCCCHHHHHHHHHHCCCC
Confidence 346777777777777777
No 299
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=37.43 E-value=45 Score=25.48 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 048707 26 VKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~ 45 (114)
...|+.+++.|+|||.+.+.
T Consensus 442 ~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 442 KERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 46889999999999999874
No 300
>PF03434 DUF276: DUF276 ; InterPro: IPR005096 This family is specific to Borrelia burgdorferi (Lyme disease spirochete). The protein is encoded on extrachromosomal DNA and is of unknown function.
Probab=37.25 E-value=40 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEE
Q 048707 21 SEEACVKILKNCYEALPENGKVI 43 (114)
Q Consensus 21 ~d~~~~~~l~~~~~aL~pgG~li 43 (114)
-+++....|..+++.|+|||..+
T Consensus 53 ie~eii~~ln~lFsk~K~~g~Yw 75 (291)
T PF03434_consen 53 IEEEIINELNLLFSKMKPGGTYW 75 (291)
T ss_pred HHHHHHHHHHHHHHhcCCCchHH
Confidence 36778899999999999999865
No 301
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=36.91 E-value=31 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHcCCceeEEEEcC
Q 048707 79 MTEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
-.++|++++++++||++++-...+
T Consensus 241 vnE~evE~~~q~~G~~IVrPEtl~ 264 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPETLG 264 (368)
T ss_pred hCHHHHHHHHHhcCcEEEechhcC
Confidence 357899999999999998865543
No 302
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=36.89 E-value=30 Score=19.82 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEee
Q 048707 26 VKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii~d~ 47 (114)
++++.+-...|.+|+.|++.+-
T Consensus 38 ~~v~~~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 38 RKVLEEYGDELSPGAVLLLKDV 59 (86)
T ss_pred HHHHhhcCCccccCEEEEEeee
Confidence 4678887889999999999995
No 303
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=36.56 E-value=39 Score=16.51 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCceeE
Q 048707 82 QDFKTLAKAAGFQGFK 97 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~ 97 (114)
+++.+.+..|||..+.
T Consensus 1 ~e~a~Rl~~AgF~~i~ 16 (41)
T PF11590_consen 1 EETAERLRSAGFATIG 16 (41)
T ss_dssp -HHHHHHHHTT-EEEC
T ss_pred ChHHHHHHHHhHHHhc
Confidence 3677889999998754
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.48 E-value=98 Score=23.52 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.5
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
|+++.-..=-+--|++...=++++.++++|.-.|+++|...+.+
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 77766543222336666777888999999999999999877654
No 305
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=36.46 E-value=1.4e+02 Score=20.44 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeee--cCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEE
Q 048707 22 EEACVKILKNCYEALPENGKVIVAECI--LPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~lii~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
++++.=+..++..-|++||.++|.=.. .+.+.. +. . --++-.+-|++.||++.++.
T Consensus 156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d--p~-------------------~-vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD--PE-------------------E-VFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred chHHHHHHHHHHHhcccCCeEEEEEEeecccccCC--HH-------------------H-HHHHHHHHHHhcCceeeEEe
Confidence 445666777888999999976664321 222211 10 0 01223456677899999987
Q ss_pred EcCC---ceeEEEEEeC
Q 048707 100 CSAF---STYIMEFLKK 113 (114)
Q Consensus 100 ~~~~---~~~ii~a~~~ 113 (114)
.+.+ .+.++.++.+
T Consensus 214 ~LePye~DH~~i~~~~~ 230 (231)
T COG1889 214 DLEPYEKDHALIVAKYK 230 (231)
T ss_pred ccCCcccceEEEEEeec
Confidence 7754 5678877754
No 306
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=36.38 E-value=56 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 048707 25 CVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~ 45 (114)
-..+++.+.+.|+|||.+++.
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 567899999999999988774
No 307
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=36.00 E-value=57 Score=23.73 Aligned_cols=38 Identities=3% Similarity=0.106 Sum_probs=25.7
Q ss_pred CCCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEE
Q 048707 4 SIPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVI 43 (114)
Q Consensus 4 ~~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~li 43 (114)
...+.|+|+-...+-.=+-+ .-+-++..++||||+.++
T Consensus 241 ~~~~~DivITTAlIPGrpAP--~Lvt~~mv~sMkpGSViV 278 (356)
T COG3288 241 QAKEVDIVITTALIPGRPAP--KLVTAEMVASMKPGSVIV 278 (356)
T ss_pred HhcCCCEEEEecccCCCCCc--hhhHHHHHHhcCCCcEEE
Confidence 34556888877766433333 356677889999998655
No 308
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=36.00 E-value=89 Score=18.75 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHhCCCC----CEEEEEee
Q 048707 20 WSEEACVKILKNCYEALPEN----GKVIVAEC 47 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pg----G~lii~d~ 47 (114)
.+|+++.++++.+.++.+-| |++++++.
T Consensus 65 v~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10665 65 IADDQLDEVIDIISKAAYTGKIGDGKIFVAEL 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 46777778888887776543 99999874
No 309
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=35.93 E-value=1.1e+02 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=14.8
Q ss_pred HhCCCCCEEEEEeeecCCC
Q 048707 34 EALPENGKVIVAECILPVL 52 (114)
Q Consensus 34 ~aL~pgG~lii~d~~~~~~ 52 (114)
++|++|.+++|+|-+....
T Consensus 189 ~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred hhCCCcCEEEEEeeecccC
Confidence 5788999999988766543
No 310
>PRK03094 hypothetical protein; Provisional
Probab=35.91 E-value=48 Score=18.84 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=19.7
Q ss_pred eecCHHHHHHHHHHcCCceeEEEE
Q 048707 77 REMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
.+.+...+++.|++.||++++...
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCc
Confidence 355678899999999999988754
No 311
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.86 E-value=74 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=34.4
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
++|++++++++. ++++...++- ++..-+++|-+++-.+.+.+.
T Consensus 271 ~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 271 TEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred hcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEecccccccc
Confidence 457899999987 6776665655 888889999999999887764
No 312
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=35.78 E-value=40 Score=17.14 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.8
Q ss_pred HHHHHHHcCCceeEEE
Q 048707 84 FKTLAKAAGFQGFKVV 99 (114)
Q Consensus 84 ~~~ll~~aGf~~~~~~ 99 (114)
=.++|+..||.++.+-
T Consensus 23 k~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 23 KHRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHHCCCEEEEec
Confidence 3678899999998774
No 313
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=35.74 E-value=93 Score=21.82 Aligned_cols=62 Identities=15% Similarity=-0.033 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCCEEEEEeeecCCCCCCchhh-hhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeE
Q 048707 27 KILKNCYEALPENGKVIVAECILPVLPDPSLAS-KQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
+.+++..+.+++|+..+++.+-..++....... ...+...+ ...+..++++++++.|.+.+.
T Consensus 215 ~~~~~~l~~l~~g~~eimcHPg~~d~~l~~~s~~~~~R~~E~---------~~L~sp~~~~~l~~~~I~Li~ 277 (283)
T TIGR03473 215 ARLLAALERLPEGVSEIYFHPATAQDAEITPSMPGYRHADEL---------AALLSPRVKAALKELGITLGG 277 (283)
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCChHhhccCCCCCccHHHH---------HHHcCHHHHHHHHHCCCEEec
Confidence 567778888898887777765433321000000 00000011 123568999999999977754
No 314
>PF15603 Imm45: Immunity protein 45
Probab=35.47 E-value=82 Score=17.92 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=29.0
Q ss_pred ceEEEeccccccC---------ChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNW---------SEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~---------~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|.|+..+.+-+| ++.+.+++++.+.+.+...|..+..|
T Consensus 35 ~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 35 GDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred cCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 4666767777644 45678899999999999888776543
No 315
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=35.39 E-value=69 Score=18.94 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++++.+.|+||...++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 589999999999988777654
No 316
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=35.28 E-value=68 Score=16.46 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=16.4
Q ss_pred ecCHHHHHHHHHHcCCceeEEE
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..+.++..+.|+++||......
T Consensus 8 g~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 8 GMTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp TSBHHHHHHHHHHTT-EEEEEE
T ss_pred CCcHHHHHHHHHHCCCEEEEEE
Confidence 3688999999999999654443
No 317
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=34.95 E-value=40 Score=19.55 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHhCCC---C-CEEEEEee
Q 048707 20 WSEEACVKILKNCYEALPE---N-GKVIVAEC 47 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~p---g-G~lii~d~ 47 (114)
.+|++..++++.+.+++.. | |++++.+.
T Consensus 62 v~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 62 VPDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred ECHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 3566666777777666555 3 88988774
No 318
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=34.65 E-value=47 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 23 EACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
++....-+.+.+.|||+|.+-.....
T Consensus 183 Edl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 183 EDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred HHHHHHHHHHhhhcCCCceEEEecCc
Confidence 44678889999999999998876654
No 319
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=34.45 E-value=97 Score=24.56 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCcceEEEecccccc----CC-h-HHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADVIFMKWICHN----WS-E-EACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~----~~-d-~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
++..|+.++-...-+ .+ . +...++++.+.++++.||+++|--+
T Consensus 362 ~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~f 410 (630)
T TIGR03675 362 FPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVF 410 (630)
T ss_pred CCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 355788888665442 12 2 2245677888899999999999543
No 320
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=34.36 E-value=36 Score=21.24 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=22.5
Q ss_pred hhhcchhhhhccCCceecCHHHHHHHHHHcC
Q 048707 62 VIHIDCIMLAHTTGGREMTEQDFKTLAKAAG 92 (114)
Q Consensus 62 ~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 92 (114)
...+|+.+++ +.+...+.+.|+++|+-.|
T Consensus 62 R~l~D~YlmG--y~~~Rl~~~~We~lLQlsp 90 (132)
T PF02479_consen 62 RLLLDFYLMG--YTRQRLTPACWERLLQLSP 90 (132)
T ss_pred HHHHHHHHHh--hccCCCCHHHHHHHHhhCc
Confidence 4567888875 5566778999999998665
No 321
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=33.99 E-value=32 Score=21.71 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCcceEEEeccccccCCh---HHHHHHHHHHHHhCCCCCE
Q 048707 5 IPKADVIFMKWICHNWSE---EACVKILKNCYEALPENGK 41 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d---~~~~~~l~~~~~aL~pgG~ 41 (114)
++.+|+|++-.-.-...+ .+...+...++++.+.|+.
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~p 44 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGP 44 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCc
Confidence 345799999875433333 2345666777777776654
No 322
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=33.92 E-value=23 Score=23.63 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=27.1
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
.+|+|++-. +..+-...+..+.+.|+|||.|++-+...
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 358777543 44556778888889999999888755443
No 323
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=33.80 E-value=47 Score=22.38 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=39.8
Q ss_pred ceEEEeccccccCC------hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCH
Q 048707 8 ADVIFMKWICHNWS------EEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTE 81 (114)
Q Consensus 8 ~D~v~~~~vlh~~~------d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (114)
.|+|+=+..+.-++ +.....-+..+.+.|+|||.++|.-+ ..|.
T Consensus 137 fdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~ 186 (227)
T KOG1271|consen 137 FDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTK 186 (227)
T ss_pred eeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccH
Confidence 47777666554332 11112335566677788888777433 2356
Q ss_pred HHHHHHHHHcCCceeEEEEcC
Q 048707 82 QDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+|+.+.++.-||......+.+
T Consensus 187 dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 187 DELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred HHHHHHHhcCCeEEEEeeccc
Confidence 777777777778887776654
No 324
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=33.80 E-value=52 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCceeEEE
Q 048707 82 QDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (114)
.+|.+.|+..||++..+.
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~ 57 (149)
T COG3019 40 DEWAQHMKANGFEVKVVE 57 (149)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 689999999999996654
No 325
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=33.74 E-value=54 Score=15.37 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.5
Q ss_pred cCHHHHHHHHHHcCCcee
Q 048707 79 MTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (114)
.+.+++++||++.|...-
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 467899999999996653
No 326
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=33.64 E-value=1.4e+02 Score=19.93 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=26.5
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+.+++++++.....-.++...+.++++.+. +.+++...+.
T Consensus 149 ~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r---~~rviwLnP~ 188 (222)
T PF05762_consen 149 RRTTVVIISDGWDTNDPEPLAEELRRLRRR---GRRVIWLNPL 188 (222)
T ss_pred cCcEEEEEecccccCChHHHHHHHHHHHHh---CCEEEEECCc
Confidence 346888888875545555566666666665 7777776654
No 327
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=33.56 E-value=82 Score=19.50 Aligned_cols=28 Identities=36% Similarity=0.518 Sum_probs=15.8
Q ss_pred cCCceecCHHHHHHHHHHcCC-----ceeEEEEc
Q 048707 73 TTGGREMTEQDFKTLAKAAGF-----QGFKVVCS 101 (114)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf-----~~~~~~~~ 101 (114)
.-+|+.++.++|.++|..+ | ...++.+-
T Consensus 55 ~~~G~k~~~e~WK~~~~~~-~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 55 EWNGRKLDPEDWKELFTAA-FLIATGEEQRVVPG 87 (127)
T ss_dssp -BTTB---HHHHHHHHHHH-H-----S--EEEE-
T ss_pred HhcCccCCHHHHHHHHHHH-HhhhccchhhhccC
Confidence 3479999999999999854 5 44455543
No 328
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=33.49 E-value=47 Score=21.27 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=21.5
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEE
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVI 43 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~li 43 (114)
..||+++++.+= ..++++..+-+++..+.+.|+..++
T Consensus 141 ~~ADvIvlnK~D-~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 141 AFADVIVLNKID-LVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp CT-SEEEEE-GG-GHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred hhcCEEEEeccc-cCChhhHHHHHHHHHHHHCCCCEEe
Confidence 346999998872 2344433466777777888887765
No 329
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=33.45 E-value=1.6e+02 Score=20.17 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCceeEE
Q 048707 82 QDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (114)
+.+.++++..|.+.+..
T Consensus 140 ~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 140 ELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHCCCEEEEc
Confidence 56788899999877654
No 330
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=33.35 E-value=93 Score=21.29 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=31.7
Q ss_pred HhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEE
Q 048707 34 EALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 34 ~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
+++++|.+++|+|-+.................+....+ ..--..+....|+++.++.|+.+..+.
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvg-v~vlv~~~~~~~~~l~~~~~vpv~sl~ 235 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVG-VFFLIAVGEVGIDRAREETDAPVDALY 235 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEE-EEEEEecCchHHHHHhHhcCCCEEEEE
Confidence 46889999999998776542110000000011100000 000012333458888888887776554
No 331
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=33.07 E-value=47 Score=15.77 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=13.3
Q ss_pred cccccCChHHHHHHHHHH
Q 048707 15 WICHNWSEEACVKILKNC 32 (114)
Q Consensus 15 ~vlh~~~d~~~~~~l~~~ 32 (114)
.|+++++.+.+..++.-+
T Consensus 17 ~Vfd~v~~~Ka~~im~lA 34 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLLA 34 (36)
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 366778988888887644
No 332
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.56 E-value=1.1e+02 Score=17.94 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=27.5
Q ss_pred CceecCHHHHHHHHHHcCCceeE----EEEcCCceeEEEEEe
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFK----VVCSAFSTYIMEFLK 112 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~----~~~~~~~~~ii~a~~ 112 (114)
.|..-+.+.+.+.|++.|+.+.. +....++.+.|++.+
T Consensus 8 rGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 8 RGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred cCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 46677889999999999977632 344556677777653
No 333
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=32.50 E-value=1.2e+02 Score=18.32 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 23 EACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
+...+++++++++++.-|.+..+|+-.
T Consensus 34 ~~~Lk~~~~~A~~vkG~gT~~~vdCgd 60 (112)
T cd03067 34 EALLKLLSDVAQAVKGQGTIAWIDCGD 60 (112)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEecCC
Confidence 335689999999999999999999853
No 334
>PRK15450 signal transduction protein PmrD; Provisional
Probab=32.48 E-value=32 Score=19.56 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.8
Q ss_pred CceecCHHHHHHHHHHcC
Q 048707 75 GGREMTEQDFKTLAKAAG 92 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aG 92 (114)
++..|+.+||.++.+.+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 467899999999987664
No 335
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=32.34 E-value=62 Score=17.61 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCceeEEE
Q 048707 81 EQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~ 99 (114)
...+++-|.++|++-++++
T Consensus 5 V~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 5 VRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHcCCCcceee
Confidence 3567889999999999874
No 336
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=32.32 E-value=86 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCcceEEEe-cccc-ccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADVIFM-KWIC-HNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~v~~-~~vl-h~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+..+|+++. ++.= ..+++++..++.+ +.+.||.++.+..
T Consensus 56 L~~~D~lV~~~~~~~~~l~~eq~~~l~~----~V~~GgGlv~lHs 96 (215)
T cd03142 56 LAETDVLLWWGHIAHDEVKDEIVERVHR----RVLDGMGLIVLHS 96 (215)
T ss_pred HhcCCEEEEeCCCCcCcCCHHHHHHHHH----HHHcCCCEEEECC
Confidence 445698887 3333 4577765444433 4555766666664
No 337
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=32.16 E-value=1.1e+02 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 20 WSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
++++..+++++.+.++ |+.+++.-.
T Consensus 8 MP~~~L~~l~~~a~~~---~~~~V~RG~ 32 (113)
T PF09673_consen 8 MPDASLRNLLKQAERA---GVVVVFRGF 32 (113)
T ss_pred CCHHHHHHHHHHHHhC---CcEEEEECC
Confidence 4787777888887776 777777443
No 338
>PRK09662 GspL-like protein; Provisional
Probab=31.76 E-value=44 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 048707 81 EQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (114)
-..|.++|+++|++..++.|-
T Consensus 7 mq~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 7 MRNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHHcCCcceeecCC
Confidence 368999999999999988763
No 339
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=31.57 E-value=65 Score=21.23 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=16.9
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
+..+.++++-.+. .++++ ..+++.+..+.||.|++.
T Consensus 55 L~~Ykllv~P~~~-~l~~~----~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 55 LSGYKLLVLPSLY-ILSPE----FAERLRAYVENGGTLILT 90 (207)
T ss_dssp -TT-SEEEES--S-C--HH----H---HHHHHT-SS-EEE-
T ss_pred cccCcEEEEeeEE-EEChH----HHHHHHHHHHCCCEEEEE
Confidence 4446788888775 35553 556666677779999874
No 340
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=31.55 E-value=54 Score=17.58 Aligned_cols=27 Identities=26% Similarity=0.715 Sum_probs=17.9
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 15 WICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 15 ~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
+=+|||+.. +=-+..|+.|..|-.=++
T Consensus 34 WKmhHWn~q---rkt~~fY~~LekgeisVv 60 (63)
T PLN03155 34 WKMHHWNEQ---RKTRSFYDLLEKGEISVV 60 (63)
T ss_pred HHHhhhhhH---HHHHHHHHHHhcCceEEe
Confidence 346999985 455677888886644333
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.11 E-value=1.4e+02 Score=22.43 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=27.7
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
+|+|++=..=....|+....-|+++.+++.|.+.++++|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 466665543322245555677788888888888888888643
No 342
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=30.70 E-value=53 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+...|.-+.+.|+|||.+++--.
T Consensus 118 ~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 118 ILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCEEEEEec
Confidence 34445555567999999888443
No 343
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.64 E-value=1.1e+02 Score=21.11 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPV 51 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~ 51 (114)
+.......++.+.+++||.|++-....+.
T Consensus 160 ~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 160 DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 33558889999999999988885544444
No 344
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=30.60 E-value=35 Score=19.34 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhCCCCCE
Q 048707 22 EEACVKILKNCYEALPENGK 41 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~ 41 (114)
..+..++|+.+++||+.-|.
T Consensus 14 ~~~~~~iL~~Vy~AL~EKGY 33 (79)
T PF06135_consen 14 EKEIREILKQVYAALEEKGY 33 (79)
T ss_pred hhhHHHHHHHHHHHHHHcCC
Confidence 45688999999999998654
No 345
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=30.60 E-value=1.2e+02 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.1
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEcCC
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFKVVCSAF 103 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (114)
+-+..++++|.++|+.|+-+++.......
T Consensus 29 ~LR~i~~~~w~~~L~~a~C~Ils~~sn~~ 57 (331)
T PF01536_consen 29 GLRSIPREFWDEMLDLAGCEILSEISNEH 57 (331)
T ss_dssp -GGGS-HHHHHHHHHHCT-EEEEEEE-SS
T ss_pred ccccCCHHHHHHHHHhcCCEEEEEEccCc
Confidence 34567899999999999999988876544
No 346
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=30.29 E-value=1.1e+02 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=19.5
Q ss_pred CcceEEEeccccccCChHHHHHHH-HHHHHhCCCCCEEEE
Q 048707 6 PKADVIFMKWICHNWSEEACVKIL-KNCYEALPENGKVIV 44 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l-~~~~~aL~pgG~lii 44 (114)
+++|+|++.--+ +++ ...++ ++..+.|+||..++-
T Consensus 189 ~~aDvvv~~lPl---t~~-T~~li~~~~l~~mk~ga~lIN 224 (312)
T PRK15469 189 SQTRVLINLLPN---TPE-TVGIINQQLLEQLPDGAYLLN 224 (312)
T ss_pred hcCCEEEECCCC---CHH-HHHHhHHHHHhcCCCCcEEEE
Confidence 346777644332 233 33444 457788999865443
No 347
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=30.18 E-value=2.1e+02 Score=20.56 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-------hcchhhhhccCCceecCHHHHHHH-------
Q 048707 22 EEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVI-------HIDCIMLAHTTGGREMTEQDFKTL------- 87 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~rt~~e~~~l------- 87 (114)
+++...-++++.++++..|..+++...-......+....... .............++.|.+|+.++
T Consensus 75 ~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~A 154 (341)
T PF00724_consen 75 DDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQA 154 (341)
T ss_dssp SHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHH
Confidence 445678899999999998888888764322111100000000 000000000011256677777654
Q ss_pred ---HHHcCCceeEEEEcCC
Q 048707 88 ---AKAAGFQGFKVVCSAF 103 (114)
Q Consensus 88 ---l~~aGf~~~~~~~~~~ 103 (114)
.++|||..+++.-.-+
T Consensus 155 A~~A~~AGfDGVEIH~ahG 173 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHG 173 (341)
T ss_dssp HHHHHHTT-SEEEEEESTT
T ss_pred HHHHHHhccCeEeecccch
Confidence 5689999999876543
No 348
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=30.01 E-value=53 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=17.0
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHh
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEA 35 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~a 35 (114)
|++++..|+-||.-.+..++.+.=|++
T Consensus 103 dl~Iiv~Vfi~p~a~D~~kiy~~NY~A 129 (159)
T PF08714_consen 103 DLVIIVSVFIHPDALDDKKIYRYNYEA 129 (159)
T ss_dssp GEEEEEEEE--TT---HHHHHHHHHHH
T ss_pred cEEEEEEEEeCccccCHHHHHHHHHHH
Confidence 888888888888866667777766654
No 349
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=29.96 E-value=72 Score=22.33 Aligned_cols=68 Identities=18% Similarity=-0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEE
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..-.|.+..+.|++.|.|.|-+.-.-+..... +..-..+- .....+......++++|.+.|..++++.
T Consensus 99 ~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~---rv~g~~~~----~~~~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 99 DHDFLWRIHKALPERGEIGIFNRSHYEDVLVV---RVHGLIPK----AIWERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred cCchHHHHHHhCCCCCeEEEEcCccccchhhh---hhcCCCCH----HHHHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 44567777777777777777665333321100 00000000 0001122345678888888888888774
No 350
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=29.94 E-value=87 Score=21.30 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|-..+.++++|+|..++.|.
T Consensus 184 QIA~a~s~~v~p~gVaVV~Ea 204 (247)
T KOG2698|consen 184 QIAVALSQAVQPAGVAVVVEA 204 (247)
T ss_pred HHHHHHHHhcCccceEEEEec
Confidence 455556679999999999984
No 351
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=29.87 E-value=70 Score=15.77 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.6
Q ss_pred ecCHHHHHHHHHHcCCcee
Q 048707 78 EMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~ 96 (114)
+.+.++..++.++.||...
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFT 44 (49)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 3488999999999998763
No 352
>PRK05473 hypothetical protein; Provisional
Probab=29.77 E-value=47 Score=19.11 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCE
Q 048707 21 SEEACVKILKNCYEALPENGK 41 (114)
Q Consensus 21 ~d~~~~~~l~~~~~aL~pgG~ 41 (114)
...+..++|..+++||+.-|.
T Consensus 16 ~~~~v~eiL~~Vy~AL~EKGY 36 (86)
T PRK05473 16 KKKDVREILTTVYDALEEKGY 36 (86)
T ss_pred cHHHHHHHHHHHHHHHHHcCC
Confidence 345688999999999987554
No 353
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=29.67 E-value=1.8e+02 Score=22.87 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=36.1
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDP 55 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~ 55 (114)
|-|+-..+=.-+++++...+.+++.+.|..+-.+++.|...+.++..
T Consensus 97 d~i~Wg~vN~p~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~~ 143 (561)
T PTZ00311 97 DDIWWGKVNIPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPKY 143 (561)
T ss_pred cccccCccCccCCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCccc
Confidence 44444455455778888899999999998888899999988876543
No 354
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=29.54 E-value=1.2e+02 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..+....++|++||+++++-..
T Consensus 240 ~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhHHHHHHHHhcCCEEEEECCC
Confidence 4567778899999999998765
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=29.26 E-value=1.4e+02 Score=18.51 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 21 SEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 21 ~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+.++..++-+++.+.|++|..+++.-
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G 29 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKG 29 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 34556778888888898887766643
No 356
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=28.92 E-value=64 Score=18.02 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=18.1
Q ss_pred ecCHHHHHHHHHHcCCceeEEEE
Q 048707 78 EMTEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~ 100 (114)
.--...+.++|+..||+...+-.
T Consensus 15 ~GlA~~~a~~L~~~Gf~v~~~~n 37 (90)
T PF13399_consen 15 SGLAARVADALRNRGFTVVEVGN 37 (90)
T ss_pred cCHHHHHHHHHHHCCCceeecCC
Confidence 33467899999999999977643
No 357
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.92 E-value=86 Score=17.90 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.8
Q ss_pred CCceecCHHHHHHHHHHcCCceeEE
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
-+|..+...++++++++.|++....
T Consensus 5 VGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 5 VGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred EcCCcccHHHHHHHHHHcCCEEEEE
Confidence 4677788899999999999888665
No 358
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=28.86 E-value=1.3e+02 Score=17.66 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCC-CCEEEEEee
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPE-NGKVIVAEC 47 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~p-gG~lii~d~ 47 (114)
+.+.++++.+. +.++++..++++++...+.. ||.+.-.+.
T Consensus 2 ~~YE~~~il~~--~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~ 42 (108)
T PRK00453 2 RKYEIVFILRP--DLSEEQVKALVERFKGVITENGGTIHKVED 42 (108)
T ss_pred CceeEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34445554443 25788899999999998887 566666664
No 359
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=28.84 E-value=82 Score=22.15 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCC---ceecCHHHHHHHHHHcCCceeEEE
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTG---GREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..--|++..+.|+.+|.++|-|.-.-+. .+- ...+++ |+.. -..+...+++++|.+.|-.+++.+
T Consensus 117 ~qwY~qRy~~~lPa~GeiviFdRSwYnr-~gV-----eRVmGf----ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 117 GQWYFQRYVAHLPAAGEIVIFDRSWYNR-AGV-----ERVMGF----CTPKQYKRFLREIPEFERMLVESGIILVKFW 184 (270)
T ss_pred ccHHHHHHHHhCCCCCeEEEechhhccc-cCe-----eecccc----CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEE
Confidence 3456777777777777777776533322 110 001110 0000 112345678888999998877764
No 360
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=28.70 E-value=59 Score=19.92 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 21 SEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 21 ~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+...++.+.+.++++.||+|+++-.
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345567778888889999999999774
No 361
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=28.49 E-value=56 Score=23.84 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCcceEEEeccccccCChHH-HHHHHHHHHHhCCCCCEEE
Q 048707 5 IPKADVIFMKWICHNWSEEA-CVKILKNCYEALPENGKVI 43 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~-~~~~l~~~~~aL~pgG~li 43 (114)
++++|+++- .|| .+-.+ -.-+.++..+.|+||+.|+
T Consensus 229 v~~aDlvIg-aVL--IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 229 VKKADLVIG-AVL--IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred hhhccEEEE-EEE--ecCCCCceehhHHHHHhcCCCcEEE
Confidence 455787774 444 23222 2356677789999998776
No 362
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=28.37 E-value=1.6e+02 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..++...+.|+++|+++.+-..
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEccc
Confidence 4677788899999999987654
No 363
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.23 E-value=40 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCceeEEE
Q 048707 80 TEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (114)
+.+.|++.++.|||+.+...
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 55899999999999987764
No 364
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=28.14 E-value=1.8e+02 Score=22.70 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=34.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+||+|++--.-.+++-.+...+-+-+++.++++-.++++|.
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 47999998888888888888888888888888888888875
No 365
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=28.07 E-value=84 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEE
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKV 42 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~l 42 (114)
|.++++-- -++++++...-|+++..-|.++||.
T Consensus 81 ~~vVi~v~-~~i~~~~leaTL~QaA~nL~s~GR~ 113 (145)
T PF10726_consen 81 DQVVIAVP-PDITPEALEATLEQAASNLFSGGRS 113 (145)
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHHhccccCcc
Confidence 66665543 5789999999999999999998764
No 366
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=27.80 E-value=34 Score=19.76 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHH---HcCCc
Q 048707 23 EACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAK---AAGFQ 94 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~---~aGf~ 94 (114)
+++..+++-+.+.=..=|.-.++|.+.+....... . ..+.-+..-..|+.++.++|++++. ..|+=
T Consensus 4 ~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i~----~--~~~~~l~~yG~gk~~~~~~~~~li~~Li~~g~L 72 (106)
T PF09382_consen 4 EEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKIR----E--KGHDQLPTYGIGKDMSKDDWERLIRQLILEGYL 72 (106)
T ss_dssp HHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCCH----H--TTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHhccchhhh----h--cCCCcCcccCCcccCCHHHHHHHHHHHHHcCCc
Confidence 34677888777763434666666766555432210 1 1111111112366789999998877 44544
No 367
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.65 E-value=29 Score=26.12 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred cceEEEeccccccCCh-HHHHHHHHHHHHhCCCCCEEE
Q 048707 7 KADVIFMKWICHNWSE-EACVKILKNCYEALPENGKVI 43 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d-~~~~~~l~~~~~aL~pgG~li 43 (114)
.+|+++.-.. =.+.+ |-..+.|..+.+-|+|||.++
T Consensus 258 kvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3698885543 22333 224456777788999997654
No 368
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.65 E-value=1.6e+02 Score=19.99 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=17.9
Q ss_pred CCceecCHHHHHHHHHHcCCceeEE
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
.+|..++.+++.++++ +|...+-+
T Consensus 197 ~~GGi~s~edi~~l~~-~G~~~viv 220 (234)
T PRK13587 197 ASGGIRHQQDIQRLAS-LNVHAAII 220 (234)
T ss_pred EeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 4577899999999884 78776543
No 369
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.64 E-value=64 Score=16.29 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCce
Q 048707 81 EQDFKTLAKAAGFQG 95 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~ 95 (114)
.+...+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 779999999999975
No 370
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=27.63 E-value=78 Score=22.41 Aligned_cols=21 Identities=5% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++.+.+.|++||++++.-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEee
Confidence 467888899999999998764
No 371
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=27.63 E-value=2.5e+02 Score=20.62 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 20 WSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+.+++...-++++.+++...|..++....
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEcc
Confidence 34555678899999999988877777764
No 372
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=27.58 E-value=64 Score=22.07 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEE
Q 048707 25 CVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (114)
..-.|.+..+.|++.|.+.|-+.-.-+.... .+..-..+-. ....+.....++++.|.+.|..++++.
T Consensus 74 ~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv---~rv~~~~~~~----~~~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 74 TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV---ERVMGFCTDE----EYEEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred cChHHHHHHHhCCCCCeEEEEeCchhhhHHH---HHhcCCCCHH----HHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4556777777777777777766433322100 0000000000 001122345678888889998888874
No 373
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.56 E-value=50 Score=15.00 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.1
Q ss_pred HHHHHHHHHc
Q 048707 82 QDFKTLAKAA 91 (114)
Q Consensus 82 ~e~~~ll~~a 91 (114)
.||.+++.+|
T Consensus 3 ~EW~~Li~eA 12 (30)
T PF08671_consen 3 EEWVELIKEA 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788887754
No 374
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=27.38 E-value=55 Score=21.15 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=18.7
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHh
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEA 35 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~a 35 (114)
|++++..|+-||.-++..++.+-=|++
T Consensus 105 dl~Iiv~Vfi~p~a~D~~kiy~~NY~A 131 (160)
T TIGR03126 105 DLVIIVSVFIHPEAKDDRKIYKYNYEA 131 (160)
T ss_pred cEEEEEEEEeccccccHHHHHHHHHHH
Confidence 788888888888755555666655554
No 375
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.36 E-value=65 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCceeEEEEcC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
...++.+|.++||..+.++...
T Consensus 90 i~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 90 IELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred HHHHHHHHHHcCCCCCcEEEee
Confidence 3688999999999999987654
No 376
>PRK10628 LigB family dioxygenase; Provisional
Probab=27.34 E-value=1.4e+02 Score=20.72 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCcceE-EEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADV-IFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~-v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+|++|+ |+--.+-..++.+ ..--|.++.+.|+..|.++|.-.
T Consensus 106 ~P~adIPVvqlSl~~~~~~~-~h~~lG~aL~~LR~~gvLIigSG 148 (246)
T PRK10628 106 YPDADIPMVQLSIDSTKPAA-WHFEMGRKLAALRDEGIMLVASG 148 (246)
T ss_pred CCCCCCCeEEeecCCCCCHH-HHHHHHHHHHhhccCCEEEEecC
Confidence 577775 3322243445444 45566777777888899888553
No 377
>PRK07680 late competence protein ComER; Validated
Probab=27.33 E-value=1.5e+02 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGK 41 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~ 41 (114)
.+|+|++.- ++.....+++++...++++..
T Consensus 62 ~aDiVilav-----~p~~~~~vl~~l~~~l~~~~~ 91 (273)
T PRK07680 62 QSDLIFICV-----KPLDIYPLLQKLAPHLTDEHC 91 (273)
T ss_pred hCCEEEEec-----CHHHHHHHHHHHHhhcCCCCE
Confidence 357776543 666678889988888887763
No 378
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=27.32 E-value=71 Score=22.48 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..+..+.++|++||++++.-..
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEccC
Confidence 4778888999999999987643
No 379
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=27.26 E-value=72 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++.+.+.|++||++++.-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 467888899999999998754
No 380
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=27.16 E-value=1.4e+02 Score=22.33 Aligned_cols=40 Identities=38% Similarity=0.562 Sum_probs=25.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
+||+|+++.+ .+..+...++++.+.++.+.++.+++.-+.
T Consensus 44 ~aD~ivinTC--~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~ 83 (440)
T PRK14862 44 GADLVIVNTC--GFIDSAVQESLEAIGEALAENGKVIVTGCL 83 (440)
T ss_pred cCCEEEEecc--cccchHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 4899999843 244444466777777766666666664443
No 381
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.11 E-value=86 Score=16.29 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.0
Q ss_pred ccccCChHHHHHHHHHHHHh
Q 048707 16 ICHNWSEEACVKILKNCYEA 35 (114)
Q Consensus 16 vlh~~~d~~~~~~l~~~~~a 35 (114)
+++.+++++..++|+.+++.
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 56788999999999988886
No 382
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=27.00 E-value=88 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+..||+++++.+ ++-+++..+.+++..+.|+|..+++-...
T Consensus 144 ia~AD~ivlNK~--Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 144 LAFADVIVLNKT--DLVDAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred HHhCcEEEEecc--cCCCHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 445799999987 34444447888889999999999886443
No 383
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=26.92 E-value=1.1e+02 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 19 NWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.++++ -.+++++.|..||.|++-+.
T Consensus 66 ~~s~~----e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 66 PLSDE----EIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred CCCHH----HHHHHHHHHHcCCEEEEECC
Confidence 56664 45667778888999999776
No 384
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=26.79 E-value=1.9e+02 Score=19.67 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=7.0
Q ss_pred CCCCEEEEEeee
Q 048707 37 PENGKVIVAECI 48 (114)
Q Consensus 37 ~pgG~lii~d~~ 48 (114)
+|-|..+|+...
T Consensus 6 ~p~g~alII~n~ 17 (241)
T smart00115 6 KPRGLALIINNE 17 (241)
T ss_pred CCCcEEEEEECc
Confidence 355666666543
No 385
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=26.78 E-value=1.8e+02 Score=20.69 Aligned_cols=45 Identities=9% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCC--CEEEEEeeecCCCC
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPEN--GKVIVAECILPVLP 53 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pg--G~lii~d~~~~~~~ 53 (114)
+.++|+|+..+. +..+..+.+.++.+++|.. =.++++|++.++..
T Consensus 71 ~~~~davltGYl----gs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~g 117 (281)
T COG2240 71 LGECDAVLTGYL----GSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPG 117 (281)
T ss_pred ccccCEEEEccC----CCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCC
Confidence 345688886654 4333344555555555543 37899999998864
No 386
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=26.74 E-value=1.3e+02 Score=18.30 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHhCC---CC-CEEEEEee
Q 048707 20 WSEEACVKILKNCYEALP---EN-GKVIVAEC 47 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~---pg-G~lii~d~ 47 (114)
.+|+...+++..+.++++ +| |++++++.
T Consensus 65 V~de~ve~vie~I~~~a~tG~~GDGkIFV~~V 96 (112)
T COG0347 65 VSDEDVDEVIEAIKKAARTGKIGDGKIFVSPV 96 (112)
T ss_pred EChHHHHHHHHHHHHHHhcCCCCCeEEEEEEh
Confidence 457777788888887777 43 89998774
No 387
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=26.62 E-value=69 Score=22.73 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeee-------cCCCCCCchhh-hhhhhcc------hhhhhccCCceecCHHHHHHHHHH
Q 048707 25 CVKILKNCYEALPENGKVIVAECI-------LPVLPDPSLAS-KQVIHID------CIMLAHTTGGREMTEQDFKTLAKA 90 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~~-------~~~~~~~~~~~-~~~~~~~------~~~~~~~~~g~~rt~~e~~~ll~~ 90 (114)
....+..+..+|+.||||+-.--- ++-..-++... ....... -.+. ....|-+-+.+.=.+-+++
T Consensus 46 Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~-~avEGaED~~~~g~~dl~~ 124 (298)
T COG2103 46 IAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAIL-KAVEGAEDDEELGEADLKN 124 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHH-HhhcCccccHHHHHHHHHH
Confidence 345667778899999999875431 11110111000 0000011 0111 2334667778888888888
Q ss_pred cCCceeEE
Q 048707 91 AGFQGFKV 98 (114)
Q Consensus 91 aGf~~~~~ 98 (114)
.++...++
T Consensus 125 ~~lt~~Dv 132 (298)
T COG2103 125 IGLTAKDV 132 (298)
T ss_pred cCCCcCCE
Confidence 99887665
No 388
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.59 E-value=1.6e+02 Score=20.22 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=20.5
Q ss_pred CCceecCHHHHHHHHHHcCCceeEE
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
.+|..++.+++.+++++.|..-+-+
T Consensus 201 asGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 201 ALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4677899999999998888877654
No 389
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=2.3e+02 Score=19.84 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcC-CceeEEEEcC
Q 048707 24 ACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAG-FQGFKVVCSA 102 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~~~~ 102 (114)
...+++.++.+.|+|||.+++ +. +.+ ..+...+++.+.| |..+...+-.
T Consensus 216 ~~~~i~~~a~~~l~~~g~l~l-e~--g~~---------------------------q~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 216 VYRRILGEAPDILKPGGVLIL-EI--GLT---------------------------QGEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred HHHHHHHhhHHHcCCCcEEEE-EE--CCC---------------------------cHHHHHHHHHhcCCceEEEEEecC
Confidence 356778888888888766665 22 111 1456688888889 6666665543
Q ss_pred -CceeEEEEEe
Q 048707 103 -FSTYIMEFLK 112 (114)
Q Consensus 103 -~~~~ii~a~~ 112 (114)
+..-++.+.+
T Consensus 266 ~g~~rv~~~~~ 276 (280)
T COG2890 266 FGRDRVVLAKL 276 (280)
T ss_pred CCceEEEEEEe
Confidence 3444555443
No 390
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=26.47 E-value=2e+02 Score=18.98 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=32.6
Q ss_pred HhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 34 EALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 34 ~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
.++++|.+++|+|-+...........+........... ..--..+....+++.+++.|.....+...
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvg-v~~lvd~~~~~g~~~l~~~gvpv~sL~~~ 178 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAG-IGIVIEKSFQNGRQELVELGYRVESLARI 178 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEE-EEEEEEecCccHHHHHHhcCCcEEEEEEE
Confidence 35789999999998776542211000000000000000 00001244345788888888776655443
No 391
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=26.40 E-value=54 Score=17.14 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHcCCcee
Q 048707 79 MTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (114)
--.++|..+|..+|.+..
T Consensus 25 glp~ew~~~l~~~~it~~ 42 (59)
T PF00786_consen 25 GLPPEWEKLLKSSGITEE 42 (59)
T ss_dssp S--HHHHHHHHSCTTSHH
T ss_pred cCCHHHHhhccccCCCHH
Confidence 347899999999987753
No 392
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=26.26 E-value=92 Score=16.65 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.3
Q ss_pred HHHcCCceeEEEEc
Q 048707 88 AKAAGFQGFKVVCS 101 (114)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (114)
-+++||.+.++.|.
T Consensus 47 Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 47 YVPAGFVVTRIRPE 60 (63)
T ss_pred hhccCcEEEEeccc
Confidence 45899999998764
No 393
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=26.14 E-value=86 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 048707 24 ACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
...+.+..+.++|+.||+|+++-.
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~~Ga 57 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIYVGA 57 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcC
Confidence 356777888899999999998653
No 394
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.76 E-value=45 Score=21.88 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCceecCHHHHHHHHHHcCCceeEEEEcCCceeEEEE
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTYIMEF 110 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a 110 (114)
.+|+.---+|++.++++.||+.++..-- ++.-++++
T Consensus 14 Ggg~kV~MAdLka~~~dlGf~~v~T~ia-SGNlvf~s 49 (178)
T COG3797 14 GGGRKVVMADLKAALTDLGFANVRTYIA-SGNLVFES 49 (178)
T ss_pred cCCceEeHHHHHHHHHHcCcchhhHhhh-cCCEEEEc
Confidence 3466677899999999999999875433 33444444
No 395
>PRK09902 hypothetical protein; Provisional
Probab=25.73 E-value=30 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred cccCChHHHHHHHHHHHHhCCC-------CCEEEEEeeecCC
Q 048707 17 CHNWSEEACVKILKNCYEALPE-------NGKVIVAECILPV 51 (114)
Q Consensus 17 lh~~~d~~~~~~l~~~~~aL~p-------gG~lii~d~~~~~ 51 (114)
+..++......+++++.++++. -|.+.+.+.....
T Consensus 122 ~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~ 163 (216)
T PRK09902 122 VSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKT 163 (216)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecC
Confidence 3334455456777777766654 3778888876653
No 396
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.70 E-value=1.1e+02 Score=18.86 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=19.6
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHh--CCCCCEEEEE
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEA--LPENGKVIVA 45 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~a--L~pgG~lii~ 45 (114)
..+|+|++. .+|+....+.+++.+. .+|| .++++
T Consensus 67 ~~aDlv~ia-----vpDdaI~~va~~La~~~~~~~g-~iVvH 102 (127)
T PF10727_consen 67 RDADLVFIA-----VPDDAIAEVAEQLAQYGAWRPG-QIVVH 102 (127)
T ss_dssp CC-SEEEE------S-CCHHHHHHHHHHCC--S-TT--EEEE
T ss_pred ccCCEEEEE-----echHHHHHHHHHHHHhccCCCC-cEEEE
Confidence 446888864 5777777777777765 5555 56664
No 397
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.69 E-value=75 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=24.1
Q ss_pred cceEEEecc-----ccccCChHHHHHH----HHHHHHhCCCCCEEEE
Q 048707 7 KADVIFMKW-----ICHNWSEEACVKI----LKNCYEALPENGKVIV 44 (114)
Q Consensus 7 ~~D~v~~~~-----vlh~~~d~~~~~~----l~~~~~aL~pgG~lii 44 (114)
.+|+|+.-. -+|++++=-..++ |+-....|+|||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 367777644 4787776333333 3334468999999774
No 398
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=25.50 E-value=93 Score=20.70 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.5
Q ss_pred cCHHHHHHHHHHcCCceeEE
Q 048707 79 MTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~ 98 (114)
...++|.+.|+++||+....
T Consensus 28 ~A~~~Wn~~fe~~Gf~~a~~ 47 (197)
T cd04276 28 EGVLYWNKAFEKAGFKNAII 47 (197)
T ss_pred HHHHHHHHHHHhcCCCccEE
Confidence 34689999999999998654
No 399
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=25.46 E-value=2e+02 Score=18.87 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=33.1
Q ss_pred HhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 34 EALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 34 ~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..+++|-+++|+|-+...........+........... ..--..++...+++.+++.|+....+...
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvg-v~~lvd~~~~~g~~~l~~~g~~~~sl~~~ 178 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAG-IGIVIEKSFQDGRKLLEEKGYRVESLARI 178 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEE-EEEEEEccCccHHHHHHhcCCcEEEEEEe
Confidence 46789999999998766542110000000000000000 00001244456788888888877666543
No 400
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=25.19 E-value=86 Score=16.20 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=11.9
Q ss_pred cCHHHHHHHHHHcCCce
Q 048707 79 MTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~ 95 (114)
.+.++..+||+..||..
T Consensus 4 w~~~~v~~WL~~~gl~~ 20 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLEQ 20 (66)
T ss_dssp HCHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHCCcHH
Confidence 35677777888777743
No 401
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=25.17 E-value=84 Score=22.18 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++.+.++|++||++++.-.
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 467778889999999998764
No 402
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.17 E-value=81 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=11.4
Q ss_pred HHhCCCCCEEEEEeeecC
Q 048707 33 YEALPENGKVIVAECILP 50 (114)
Q Consensus 33 ~~aL~pgG~lii~d~~~~ 50 (114)
|+++.|||.-+|++...+
T Consensus 114 ye~~gp~GV~liVealTd 131 (276)
T KOG2972|consen 114 YEAMGPSGVGLIVEALTD 131 (276)
T ss_pred EeeecCCceEEEEEeeec
Confidence 446667777777776544
No 403
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=25.16 E-value=1.7e+02 Score=20.88 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=27.8
Q ss_pred CCCEEEEEeee-cCCCCCCchhhhhhhhcchhhhhccCCc---eecCHHHHHHHHHHcCCc
Q 048707 38 ENGKVIVAECI-LPVLPDPSLASKQVIHIDCIMLAHTTGG---REMTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 38 pgG~lii~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~rt~~e~~~ll~~aGf~ 94 (114)
.+|.|++.|-+ .+++ .++++.... ..| ...+.+-++.|+++.|+.
T Consensus 215 ~~g~iiL~DEI~TPDs---------~R~Wd~~~~---e~g~~~~~lDKq~~R~~l~~~~~~ 263 (296)
T PRK13961 215 EDGTLTLMDEVLTPDS---------SRFWPADSY---QPGTSQPSFDKQFVRDWLETSGWD 263 (296)
T ss_pred CCCcEEEEeeccCCCc---------ceecccccc---ccCCcccccCHHHHHHHHHhcCCC
Confidence 35788888877 4443 133443211 112 246789999999998876
No 404
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=25.15 E-value=58 Score=20.67 Aligned_cols=37 Identities=8% Similarity=0.257 Sum_probs=20.9
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 5 IPKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 5 ~p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.+.+|+|++.+-. -+++.. . +... .+.+.+.++|+|-
T Consensus 117 ~~~adivi~~y~y-l~~~~~-~---~~~~-~~~~~~~ivI~DE 153 (174)
T PF06733_consen 117 AKNADIVICNYNY-LFDPSI-R---KSLF-GIDLKDNIVIFDE 153 (174)
T ss_dssp GGG-SEEEEETHH-HHSHHH-H---HHHC-T--CCCEEEEETT
T ss_pred cccCCEEEeCHHH-HhhHHH-H---hhhc-cccccCcEEEEec
Confidence 3557999998753 344432 2 2222 5677888888774
No 405
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=25.14 E-value=1.2e+02 Score=18.45 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.8
Q ss_pred ccccCChHHHHHHHHHHHHh--CCCCCEE
Q 048707 16 ICHNWSEEACVKILKNCYEA--LPENGKV 42 (114)
Q Consensus 16 vlh~~~d~~~~~~l~~~~~a--L~pgG~l 42 (114)
.=||++.+|..+.+..+..+ |.++..+
T Consensus 43 ~~~DVs~eDW~~F~~dl~~aa~ls~~~~~ 71 (123)
T PF15496_consen 43 ASHDVSEEDWTRFLNDLSEAASLSPSQSI 71 (123)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCcccce
Confidence 55899999999999999987 6666533
No 406
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=24.98 E-value=69 Score=18.25 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHcCC
Q 048707 80 TEQDFKTLAKAAGF 93 (114)
Q Consensus 80 t~~e~~~ll~~aGf 93 (114)
-.++..+||.+.||
T Consensus 74 ~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 74 HVEEVKKWLLEKGF 87 (87)
T ss_pred cHHHHHHHHHHCcC
Confidence 37899999999998
No 407
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=24.96 E-value=91 Score=21.96 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++...++|++||++++.-.
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEec
Confidence 468888899999999988764
No 408
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.87 E-value=75 Score=16.47 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHcCCce
Q 048707 80 TEQDFKTLAKAAGFQG 95 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (114)
..+...+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3578899999999963
No 409
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.78 E-value=79 Score=16.41 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHcCCce
Q 048707 80 TEQDFKTLAKAAGFQG 95 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (114)
..+...+.|+++||++
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 3568889999999986
No 410
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=24.76 E-value=94 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..++.+.+.|+|+|++++.-..
T Consensus 199 ~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 199 AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHHHHHHHHhcCCCEEEEeccC
Confidence 4677888899999999987654
No 411
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=24.70 E-value=1.3e+02 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 23 EACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+-..++|..++++|.+++.|.+++
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEec
Confidence 347799999999996667666644
No 412
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.52 E-value=93 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 23 EACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
.-+..++.-+.+.|+|||.+++-.+-
T Consensus 136 ~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 136 YLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 33667777788899999999997763
No 413
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=91 Score=19.42 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC
Q 048707 18 HNWSEEACVKILKNCYEALPENG 40 (114)
Q Consensus 18 h~~~d~~~~~~l~~~~~aL~pgG 40 (114)
-+..|++..+++..+.++|.+++
T Consensus 109 ~D~~~edv~kv~~~i~e~l~~~~ 131 (135)
T COG4273 109 SDCKDEDVEKVARTIKEALTIKL 131 (135)
T ss_pred CCCCHHHHHHHHHHHHHHhhhcc
Confidence 35778999999999999998864
No 414
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=24.45 E-value=1.9e+02 Score=18.31 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=22.9
Q ss_pred eEEEecccccc----CC-hHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 9 DVIFMKWICHN----WS-EEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 9 D~v~~~~vlh~----~~-d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
|+.++.++-.+ ++ -++..+...++.+.++++|.+++.
T Consensus 73 ~i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n 114 (188)
T PF08245_consen 73 DIAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLN 114 (188)
T ss_dssp SEEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEE
T ss_pred heeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEec
Confidence 66677776543 32 355667777788888899988874
No 415
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=24.32 E-value=1.3e+02 Score=18.73 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=24.7
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCC----CCEEEEEeeecCCC
Q 048707 11 IFMKWICHNWSEEACVKILKNCYEALPE----NGKVIVAECILPVL 52 (114)
Q Consensus 11 v~~~~vlh~~~d~~~~~~l~~~~~aL~p----gG~lii~d~~~~~~ 52 (114)
-++++.. ++++.-.+.++.-...+.+ |.+++|+|.+.|-.
T Consensus 48 af~~WA~--ls~e~e~~~l~~~~~l~~~dW~sG~rlWiiD~iAPfG 91 (133)
T PF02794_consen 48 AFCSWAF--LSEEAEARYLEDPRSLSPEDWNSGDRLWIIDWIAPFG 91 (133)
T ss_pred EEEEhhc--CCHHHHHHHHcCCCCCCchhcCCCCeEEEEEEECCCC
Confidence 3444443 5665555666665433322 89999999987753
No 416
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=24.23 E-value=77 Score=15.33 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCc
Q 048707 81 EQDFKTLAKAAGFQ 94 (114)
Q Consensus 81 ~~e~~~ll~~aGf~ 94 (114)
..+|..+++.+|.+
T Consensus 28 p~~w~~l~~~~~is 41 (42)
T cd00132 28 PPDLQSLFQTAGIS 41 (42)
T ss_pred CHHHHHHHHHccCC
Confidence 45999999998864
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=24.19 E-value=2.2e+02 Score=21.52 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=26.5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECIL 49 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~ 49 (114)
+|+|++=..=....|+....-|.++.+.+.|...++++|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 466665543222234445566777788888888888888643
No 418
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=23.99 E-value=1.6e+02 Score=21.09 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=21.3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
.+|+|++.--+ +++....+.++..+.|+||..++-
T Consensus 198 ~aDiVil~lP~---t~~t~~li~~~~l~~mk~gavlIN 232 (330)
T PRK12480 198 DADIISLHVPA---NKESYHLFDKAMFDHVKKGAILVN 232 (330)
T ss_pred cCCEEEEeCCC---cHHHHHHHhHHHHhcCCCCcEEEE
Confidence 46877754433 333345566778888998864443
No 419
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.97 E-value=83 Score=17.26 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 22 EEACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 22 d~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
|+...+++=++-..+.||..++|.+.
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~eL 38 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEEL 38 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEEe
Confidence 44567788888899999999999764
No 420
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=1.6e+02 Score=17.65 Aligned_cols=26 Identities=8% Similarity=0.117 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHcCCceeEEEEcCCc
Q 048707 79 MTEQDFKTLAKAAGFQGFKVVCSAFS 104 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~~~~ 104 (114)
...+++.+-|.+.||+..+.-..+|+
T Consensus 11 ~da~~l~~~L~d~~fraTkLAsTGGF 36 (109)
T COG3870 11 QDANELEDALTDKNFRATKLASTGGF 36 (109)
T ss_pred ccHHHHHHHHHhCCceeEEeeccCce
Confidence 35678899999999999988777653
No 421
>PLN02688 pyrroline-5-carboxylate reductase
Probab=23.75 E-value=1.8e+02 Score=19.71 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
+|+|++.- +++....+++.+...++||. ++|
T Consensus 62 aDvVil~v-----~~~~~~~vl~~l~~~~~~~~-~iI 92 (266)
T PLN02688 62 SDVIILAV-----KPQVVKDVLTELRPLLSKDK-LLV 92 (266)
T ss_pred CCEEEEEE-----CcHHHHHHHHHHHhhcCCCC-EEE
Confidence 57776543 56667888888877777765 444
No 422
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=23.75 E-value=1.3e+02 Score=22.40 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=16.5
Q ss_pred ecCHHHHHHHHHHcC-CceeEE
Q 048707 78 EMTEQDFKTLAKAAG-FQGFKV 98 (114)
Q Consensus 78 ~rt~~e~~~ll~~aG-f~~~~~ 98 (114)
.++.+|+++.+++.| |.+.++
T Consensus 286 ~ps~eEv~~~Ie~~gsF~I~~l 307 (386)
T PLN02668 286 APSLQDFKEVVEANGSFAIDKL 307 (386)
T ss_pred CCCHHHHHHHHhhcCCEEeeee
Confidence 478899999999888 655444
No 423
>PRK03430 hypothetical protein; Validated
Probab=23.72 E-value=96 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCceecCHHHHHHHHHHcCCceeEE
Q 048707 74 TGGREMTEQDFKTLAKAAGFQGFKV 98 (114)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (114)
....+...+++.+.|.+|||...++
T Consensus 16 d~~~~pd~~~L~~~L~~aGF~~~eI 40 (157)
T PRK03430 16 EAELRVDQDKLEDDLTDAGFHREDI 40 (157)
T ss_pred ccccCCCHHHHHHHHHHcCCCHHHH
Confidence 3345667889999999999987655
No 424
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=23.69 E-value=98 Score=19.78 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 048707 26 VKILKNCYEALPENGKVIV 44 (114)
Q Consensus 26 ~~~l~~~~~aL~pgG~lii 44 (114)
.++++++.+.++.||++++
T Consensus 139 ~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 139 DEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp HHHHHHTHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHhcCCEEEE
Confidence 3688888888888999987
No 425
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=23.68 E-value=41 Score=14.25 Aligned_cols=13 Identities=15% Similarity=0.274 Sum_probs=8.1
Q ss_pred HHHHHhCCCCCEE
Q 048707 30 KNCYEALPENGKV 42 (114)
Q Consensus 30 ~~~~~aL~pgG~l 42 (114)
+.+...|+.||..
T Consensus 10 qhvasvlrsgg~~ 22 (26)
T PRK14755 10 QHVASVLRSGGXX 22 (26)
T ss_pred HHHHHHHHcCCcc
Confidence 3455677777754
No 426
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=23.64 E-value=45 Score=21.23 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=5.1
Q ss_pred CChHHHHHHHHHHHHhCCC-CCEEEEE
Q 048707 20 WSEEACVKILKNCYEALPE-NGKVIVA 45 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~p-gG~lii~ 45 (114)
.+.+.++++++.+.+.+.| +|.+++.
T Consensus 7 Vd~~~r~~Vf~eVi~~~GPpDaTVvVs 33 (146)
T PF08952_consen 7 VDEEKRESVFEEVISSQGPPDATVVVS 33 (146)
T ss_dssp -------------S-----TT-EEEEE
T ss_pred eCHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 4556678888888888877 7887774
No 427
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.58 E-value=1e+02 Score=16.00 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHcCCcee
Q 048707 80 TEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~ 96 (114)
..++..+.|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 45689999999999874
No 428
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=23.48 E-value=98 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 048707 80 TEQDFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~ 100 (114)
...++.+.++++||.++....
T Consensus 16 ~~g~Ii~~l~~~Gf~I~~~k~ 36 (135)
T PF00334_consen 16 HAGEIIDRLEEAGFEIVAMKM 36 (135)
T ss_dssp -HHHHHHHHHHHT-EEEEEEE
T ss_pred chHHHHHHHHHcCCeeeehhh
Confidence 457889999999999988754
No 429
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=23.41 E-value=1e+02 Score=21.97 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCC-EEEEEee
Q 048707 16 ICHNWSEEACVKILKNCYEALPENG-KVIVAEC 47 (114)
Q Consensus 16 vlh~~~d~~~~~~l~~~~~aL~pgG-~lii~d~ 47 (114)
-=|.|+++...++++.+.+..+.+| .++|.-.
T Consensus 158 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttS 190 (311)
T PF06258_consen 158 KHYRWDEEDAERLLDQLAALAAAYGGSLLVTTS 190 (311)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 3466888888899999888887765 6776543
No 430
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=23.33 E-value=1.1e+02 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 048707 24 ACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii 44 (114)
...+.++++.+.|+.|+.++|
T Consensus 83 ~~~~~~~~~~~~L~~G~~l~I 103 (210)
T cd07986 83 KNRESLREALRHLKNGGALII 103 (210)
T ss_pred hhHHHHHHHHHHHhCCCEEEE
Confidence 456789999999999987766
No 431
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=23.31 E-value=1.7e+02 Score=22.66 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=24.8
Q ss_pred CcceEEEeccccccCChHHHHHH-HHHHHHhCCCCCEEEEEee
Q 048707 6 PKADVIFMKWICHNWSEEACVKI-LKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~-l~~~~~aL~pgG~lii~d~ 47 (114)
..+|+++-..-. +......+ .++..+.++|||+++.+-.
T Consensus 247 ~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 346888755432 22111234 5889999999999887643
No 432
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=23.28 E-value=1e+02 Score=18.94 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 048707 79 MTEQDFKTLAKAAGFQGFKVV 99 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (114)
-+.+.+.+||++.|++...+.
T Consensus 62 ~~v~~V~~wL~~~G~~~~~~~ 82 (143)
T PF09286_consen 62 EDVAAVKSWLKSHGLTVVEVS 82 (143)
T ss_dssp HHHHHHHHHHHHCT-EEEEEE
T ss_pred HHHHHHHHHHHHcCCceeEEe
Confidence 356889999999999987733
No 433
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=23.21 E-value=1.3e+02 Score=18.13 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCCce
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCSAFST 105 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~~ 105 (114)
+.+.+.+-|.++||+..+....++++
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFL 37 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFL 37 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTT
T ss_pred hHHHHHHHHHHCCceEEEEeccccee
Confidence 45677888999999999998887743
No 434
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.00 E-value=78 Score=13.71 Aligned_cols=16 Identities=6% Similarity=0.297 Sum_probs=12.7
Q ss_pred eecCHHHHHHHHH-HcC
Q 048707 77 REMTEQDFKTLAK-AAG 92 (114)
Q Consensus 77 ~~rt~~e~~~ll~-~aG 92 (114)
...+.+|++.+|+ ..|
T Consensus 15 G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 15 GFIDFEELRAILRKSLG 31 (31)
T ss_dssp SEEEHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHhcC
Confidence 3678999999998 565
No 435
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=22.79 E-value=1.4e+02 Score=15.90 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=19.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 048707 19 NWSEEACVKILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pgG~lii~d~~ 48 (114)
.++.+++.++|++ -++.|..+|-..-
T Consensus 5 ~isr~~Ae~~L~~----~~~~G~FLvR~s~ 30 (77)
T PF00017_consen 5 FISRQEAERLLMQ----GKPDGTFLVRPSS 30 (77)
T ss_dssp SSHHHHHHHHHHT----TSSTTEEEEEEES
T ss_pred CCCHHHHHHHHHh----cCCCCeEEEEecc
Confidence 3556677777776 6778999997764
No 436
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=22.77 E-value=96 Score=16.57 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=11.6
Q ss_pred ecCHHHHHHHHHHcC
Q 048707 78 EMTEQDFKTLAKAAG 92 (114)
Q Consensus 78 ~rt~~e~~~ll~~aG 92 (114)
.++.++|.+++++.|
T Consensus 14 Gk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 14 GKTLDEWLALAREGG 28 (61)
T ss_pred CcCHHHHHHHHHHhC
Confidence 367888888888874
No 437
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.77 E-value=2.2e+02 Score=21.25 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=24.6
Q ss_pred CcceEEEeccc-cccCChHHHHHHHHHHHHh--CCCCCEEEEEeee
Q 048707 6 PKADVIFMKWI-CHNWSEEACVKILKNCYEA--LPENGKVIVAECI 48 (114)
Q Consensus 6 p~~D~v~~~~v-lh~~~d~~~~~~l~~~~~a--L~pgG~lii~d~~ 48 (114)
.+||+|+++.+ +.+-.+.+....++.++++ ..|+..+++.-+.
T Consensus 37 ~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC~ 82 (439)
T PRK14328 37 EEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGCM 82 (439)
T ss_pred CcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECch
Confidence 45899998884 3333344445444555543 3466666665553
No 438
>COG5125 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=2.5e+02 Score=19.12 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 048707 24 ACVKILKNCYEALPENGKVIVAECILPVL 52 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~d~~~~~~ 52 (114)
+..+.+.++.+.|.|.|.+=..-++.++.
T Consensus 161 e~~K~~~~iSrlL~~~g~~N~fKFIidP~ 189 (259)
T COG5125 161 EEPKILAQISRLLAEKGRTNYFKFIIDPR 189 (259)
T ss_pred chhhHHHHHHHHhcccCCcceeEEecCcc
Confidence 36789999999999999998888777665
No 439
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.75 E-value=1.2e+02 Score=21.21 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhC-CCCCEEEEEeeecCCCCCCc-hhhhhhhhc-chhhhhccCCceecCH----HHHHHHHHHcCCceeE
Q 048707 25 CVKILKNCYEAL-PENGKVIVAECILPVLPDPS-LASKQVIHI-DCIMLAHTTGGREMTE----QDFKTLAKAAGFQGFK 97 (114)
Q Consensus 25 ~~~~l~~~~~aL-~pgG~lii~d~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~~rt~----~e~~~ll~~aGf~~~~ 97 (114)
+.+-+.++.|+| .|+|..+++-. .+ .+. ...+.+..+ ++.+. +..-.+.|+. ++++.++.+||.+...
T Consensus 16 ai~hi~ri~RvL~~~~Gh~LLvG~-~G---sGr~sl~rLaa~i~~~~~~-~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~ 90 (268)
T PF12780_consen 16 AIEHIARISRVLSQPRGHALLVGV-GG---SGRQSLARLAAFICGYEVF-QIEITKGYSIKDFKEDLKKALQKAGIKGKP 90 (268)
T ss_dssp HHHHHHHHHHHHCSTTEEEEEECT-TT---SCHHHHHHHHHHHTTEEEE--TTTSTTTHHHHHHHHHHHHHHHHHCS-S-
T ss_pred HHHHHHHHHHHHcCCCCCeEEecC-CC---ccHHHHHHHHHHHhccceE-EEEeeCCcCHHHHHHHHHHHHHHHhccCCC
Confidence 345556666666 57888887442 12 221 122222111 11111 1111233544 4566777889988765
Q ss_pred EE
Q 048707 98 VV 99 (114)
Q Consensus 98 ~~ 99 (114)
+.
T Consensus 91 ~v 92 (268)
T PF12780_consen 91 TV 92 (268)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 440
>COG3910 Predicted ATPase [General function prediction only]
Probab=22.53 E-value=1.7e+02 Score=19.99 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 20 WSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+++....++|..+++.-+.|+.++|..
T Consensus 159 LSp~RQlella~l~~la~sGaQ~IiAT 185 (233)
T COG3910 159 LSPSRQLELLAILRDLADSGAQIIIAT 185 (233)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455556789999999999999999865
No 441
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.47 E-value=1.1e+02 Score=20.76 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=23.2
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+|+|++.-=++++++ +++.+++.+. |+++|--
T Consensus 61 aDVVvLAVP~~a~~~-----v~~~l~~~~~--~KIvID~ 92 (211)
T COG2085 61 ADVVVLAVPFEAIPD-----VLAELRDALG--GKIVIDA 92 (211)
T ss_pred CCEEEEeccHHHHHh-----HHHHHHHHhC--CeEEEec
Confidence 689988766655554 7888888876 7887733
No 442
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=22.38 E-value=1.1e+02 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..+..+.+.|++||+++++-..
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecC
Confidence 4678888999999999987654
No 443
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=22.38 E-value=1.9e+02 Score=17.52 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEEeC
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFSTYIMEFLKK 113 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ii~a~~~ 113 (114)
..++.+.|++.||.... .++...++.+.|.
T Consensus 68 l~~~~~~L~~~Gf~~~~---~~~~~~~v~~vP~ 97 (144)
T PF08676_consen 68 LEENKEELEKLGFEIEE---FGENSIIVRSVPA 97 (144)
T ss_dssp HHHHHHHHHHTT-EEEE---ESTTEEEEEEEEC
T ss_pred HHHHHHHHHhCCeEEEE---ecCCEEEEEEeCc
Confidence 46889999999998854 5555566666553
No 444
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=22.37 E-value=1.1e+02 Score=22.51 Aligned_cols=25 Identities=16% Similarity=0.035 Sum_probs=21.0
Q ss_pred eecCHHHHHHHHHHcCCceeEEEEc
Q 048707 77 REMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..++.+|+.++++++||..+.....
T Consensus 335 ~~~~~eel~~~i~~aG~~p~~Rdt~ 359 (370)
T COG1060 335 DWRSVEELAALIKEAGRIPVERDTL 359 (370)
T ss_pred CCCCHHHHHHHHHHcCCCeeeeccc
Confidence 3678899999999999999876554
No 445
>PRK03341 arginine repressor; Provisional
Probab=22.36 E-value=61 Score=21.04 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=11.4
Q ss_pred ecCHHHHHHHHHHcCCce
Q 048707 78 EMTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~ 95 (114)
..|.+|+.+.|++.||.+
T Consensus 29 i~tQ~eL~~~L~~~Gi~v 46 (168)
T PRK03341 29 VRSQAELAALLADEGIEV 46 (168)
T ss_pred CccHHHHHHHHHHcCCcc
Confidence 346666666666666664
No 446
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=22.34 E-value=1.7e+02 Score=22.36 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=23.3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 9 DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
|-.+..+++...++.+ ...+......|++||+..++
T Consensus 319 d~~~~~~~l~~~~~~~-~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 319 VRFKDAGTLAPNSKAD-LAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cchhcccCCCCCchhh-HHHHHHHHHhcCCCCeEEEE
Confidence 4444444444455554 57788888899999975554
No 447
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.34 E-value=2.1e+02 Score=17.78 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC--C-----------Cc--hhhhhhhhcchhhhhccCCceecCHHHH
Q 048707 20 WSEEACVKILKNCYEALPENGKVIVAECILPVLP--D-----------PS--LASKQVIHIDCIMLAHTTGGREMTEQDF 84 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~--~-----------~~--~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 84 (114)
++++++..+|.+....|+.-|.-++.-....... . .. ...-....+++..- ...|+...|.+|+
T Consensus 11 L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~-lalGd~~Ls~eEf 89 (141)
T PF12419_consen 11 LTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWE-LALGDEELSEEEF 89 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEE-EEECCEECCHHHH
Confidence 6788899999998888888777666543221110 0 00 00000112222211 2457889999999
Q ss_pred HHHHHHcCCceeE
Q 048707 85 KTLAKAAGFQGFK 97 (114)
Q Consensus 85 ~~ll~~aGf~~~~ 97 (114)
.+++++.. ..++
T Consensus 90 ~~L~~~~~-~LV~ 101 (141)
T PF12419_consen 90 EQLVEQKR-PLVR 101 (141)
T ss_pred HHHHHcCC-CeEE
Confidence 99998665 3433
No 448
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=22.32 E-value=2e+02 Score=20.91 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=22.7
Q ss_pred cceEEEeccccccCChHH-HHHHHHHHHHhCCCCCEEEEEee
Q 048707 7 KADVIFMKWICHNWSEEA-CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~-~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
.+|+|++. .++.. ...++..+...+++|. ++| |.
T Consensus 81 ~ADvVIla-----VP~~~~v~~Vl~~L~~~L~~g~-IVI-d~ 115 (342)
T PRK12557 81 HGEIHILF-----TPFGKKTVEIAKNILPHLPENA-VIC-NT 115 (342)
T ss_pred CCCEEEEE-----CCCcHHHHHHHHHHHhhCCCCC-EEE-Ee
Confidence 35888876 34434 6788889999997764 444 44
No 449
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.28 E-value=95 Score=15.75 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.5
Q ss_pred cCHHHHHHHHHHcCCc
Q 048707 79 MTEQDFKTLAKAAGFQ 94 (114)
Q Consensus 79 rt~~e~~~ll~~aGf~ 94 (114)
.+.+++.+.++++||.
T Consensus 47 ~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 47 TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp SCHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHhCcC
Confidence 4678999999999984
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.25 E-value=2.4e+02 Score=18.47 Aligned_cols=6 Identities=0% Similarity=0.152 Sum_probs=2.6
Q ss_pred EEEEEe
Q 048707 41 KVIVAE 46 (114)
Q Consensus 41 ~lii~d 46 (114)
.+++.|
T Consensus 157 ~llllD 162 (214)
T PRK13543 157 PLWLLD 162 (214)
T ss_pred CEEEEe
Confidence 344444
No 451
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=22.21 E-value=1.6e+02 Score=19.50 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+|...+.+.|+|.|..++++.
T Consensus 124 T~qIa~al~~~l~p~gV~V~ieA 146 (188)
T PRK09347 124 TAQIADALQEILGPRGVAVVIEA 146 (188)
T ss_pred HHHHHHHHHHhhCCCceEEEEEE
Confidence 45777778888999999999985
No 452
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=22.20 E-value=1.3e+02 Score=18.31 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
...++.+.++++||.++....+
T Consensus 16 ~~g~Il~~i~~~Gf~I~~~k~~ 37 (133)
T cd00595 16 LLGEIIMRIEDAGFEIVAMKEL 37 (133)
T ss_pred cHHHHHHHHHHcCCEEEEeeee
Confidence 4578899999999999987654
No 453
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=22.17 E-value=1.1e+02 Score=17.14 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 048707 19 NWSEEACVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pgG~lii~d 46 (114)
+.++++..++++++...+...|..+..-
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~ 39 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSV 39 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688889999999999888865544433
No 454
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=22.17 E-value=3.8e+02 Score=20.80 Aligned_cols=30 Identities=23% Similarity=0.125 Sum_probs=27.9
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALP 37 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~ 37 (114)
.+++++..++--.+.+-....++.+.++|.
T Consensus 135 vEliimGGTFta~~~~yqe~Fi~~~~~amn 164 (515)
T COG1243 135 VELIIMGGTFTALSLEYQEWFLKVALKAMN 164 (515)
T ss_pred EEEEEecccccCCCHHHHHHHHHHHHHhhh
Confidence 389999999999999888999999999999
No 455
>PRK09019 translation initiation factor Sui1; Validated
Probab=21.96 E-value=1.9e+02 Score=17.36 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCcee
Q 048707 20 WSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 20 ~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
.++.+..++++.+.+.+.-||.+- |... ...| --++.+.++|.+.||+..
T Consensus 55 ~~~~dlk~l~K~lKkk~gcGGtvk--~~~I-----------------------elQG--D~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 55 LDDAELKKLAAELKKKCGCGGAVK--DGVI-----------------------EIQG--DKRDLLKSLLEAKGMKVK 104 (108)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEE--cCEE-----------------------EEcC--cHHHHHHHHHHHCCCeEE
Confidence 456678888888888888898875 1000 0111 125678999999999875
No 456
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=21.89 E-value=1.1e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=22.0
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 76 GREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
|+.-+.+.+.+.|++.|.+.+.+..+
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 44558999999999999988888776
No 457
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=21.88 E-value=2.3e+02 Score=19.80 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=20.1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhCCCCC
Q 048707 8 ADVIFMKWICHNWSEEACVKILKNCYEALPENG 40 (114)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG 40 (114)
+|+|++. .++.....++.++...|++|-
T Consensus 60 ~dvIi~~-----vp~~~~~~v~~~l~~~l~~g~ 87 (298)
T TIGR00872 60 PRVVWVM-----VPHGIVDAVLEELAPTLEKGD 87 (298)
T ss_pred CCEEEEE-----cCchHHHHHHHHHHhhCCCCC
Confidence 4666654 455567788889888888874
No 458
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.80 E-value=75 Score=17.89 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.8
Q ss_pred ccCCceecCHHHHHHHHHHcCCcee
Q 048707 72 HTTGGREMTEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 72 ~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (114)
+..+|.+.+..|...++.++.|-..
T Consensus 41 c~~G~~e~tA~E~~kLlT~~DFPfk 65 (80)
T COG4746 41 CESGGVEVTAAEAGKLLTDADFPFK 65 (80)
T ss_pred ccCCCeeeeHHHHHhhccccCCCCC
Confidence 4567889999999999999998653
No 459
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=21.76 E-value=96 Score=20.25 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCCEEEEE
Q 048707 24 ACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii~ 45 (114)
.+.+++.++...|+.|.+++|+
T Consensus 118 ~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 118 AAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEE
Confidence 3667899999999999888873
No 460
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=21.74 E-value=1.4e+02 Score=22.27 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCc-ceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEE
Q 048707 4 SIPK-ADVIFMKWICHNWSEEACVKILKNCYEALPENGKVI 43 (114)
Q Consensus 4 ~~p~-~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~li 43 (114)
.+|+ +|+++..-+=..+-++.-.+---.+++-|+|.|...
T Consensus 239 eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 239 ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 3565 588875443333333322222334568999998765
No 461
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.70 E-value=1.9e+02 Score=17.10 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEE
Q 048707 81 EQDFKTLAKAAGFQGFKVVCSAFSTYIM 108 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ii 108 (114)
++-+...+.+||++.+++........+.
T Consensus 39 R~yL~k~~~~agis~I~I~R~~~~i~I~ 66 (109)
T cd02412 39 RKFIKKKLKKAGISRIEIERKADRVEVT 66 (109)
T ss_pred HHHHHHHHhhCCccEEEEEEcCCCEEEE
Confidence 3556677899999999998865544443
No 462
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=21.62 E-value=2.8e+02 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 048707 16 ICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLP 53 (114)
Q Consensus 16 vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~ 53 (114)
+=+-+++++...+++++.+.+-.|-.++++|...+.++
T Consensus 67 ~N~~~~~~~~~~~~~~~~~~~m~gr~myV~d~~~G~~~ 104 (515)
T cd01919 67 LNRWLSEEDFEKAFNARFPGLMKGRTLFVVDFFMGPGS 104 (515)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeceECCCC
Confidence 33445677788899999999977888999999887653
No 463
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.51 E-value=1.8e+02 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=24.8
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 7 KADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
.+|++++.+-=-.+++.+. .++.+.+..||++++.
T Consensus 234 d~d~LvI~~P~~~ls~~e~----~~Ldqfl~~GG~ll~~ 268 (552)
T TIGR03521 234 KFDLIVIAKPTEAFSEREK----YILDQYIMNGGKALFL 268 (552)
T ss_pred CcCEEEEeCCCccCCHHHH----HHHHHHHHcCCeEEEE
Confidence 5799998887667888663 3344466678887774
No 464
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.47 E-value=3e+02 Score=19.33 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=21.0
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEEc
Q 048707 75 GGREMTEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (114)
+....+..+++++++..+...++....
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 445678899999999888888777554
No 465
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=1.1e+02 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHcCCceeEEEEcC
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCSA 102 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~ 102 (114)
+..++.++++++||+++-....+
T Consensus 171 ~~~~~~~~~~~~G~~v~~t~~~~ 193 (260)
T COG0566 171 LARTLLELLKEAGFWVVATSLDG 193 (260)
T ss_pred cHHHHHHHHHHcCeEEEEECCCC
Confidence 57799999999999998775554
No 466
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=21.37 E-value=1.1e+02 Score=22.36 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCCEEEEEeee
Q 048707 27 KILKNCYEALPENGKVIVAECI 48 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~ 48 (114)
..++.+.+.+++||+++++-..
T Consensus 280 ~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHHHHHHHhhCCCEEEEeeec
Confidence 4788889999999999997753
No 467
>PF02491 SHS2_FTSA: SHS2 domain inserted in FTSA; InterPro: IPR003494 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains [].; GO: 0007049 cell cycle; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=21.13 E-value=1.3e+02 Score=16.42 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEE
Q 048707 19 NWSEEACVKILKNCYEALPENGKVIVA 45 (114)
Q Consensus 19 ~~~d~~~~~~l~~~~~aL~pgG~lii~ 45 (114)
..+.++..++++.+.+...|.++-+|.
T Consensus 20 ~I~~~Dv~~~~~~a~~~~~~~~~~iih 46 (80)
T PF02491_consen 20 EITESDVDRLLEQARRKALPPDREIIH 46 (80)
T ss_dssp E--HHHHHHHHHHHHHHHCHTTEEEEE
T ss_pred EECHHHHHHHHHHhhcccCCCCCEEEE
Confidence 356788899999999876666776664
No 468
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=21.12 E-value=1.4e+02 Score=17.36 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 048707 24 ACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 24 ~~~~~l~~~~~aL~pgG~lii 44 (114)
+...+++.+.++|+.|..++|
T Consensus 74 ~~~~~~~~~~~~l~~g~~v~i 94 (130)
T TIGR00530 74 AIATALKAAIEVLKQGRSIGV 94 (130)
T ss_pred HHHHHHHHHHHHHhCCCEEEE
Confidence 456788999999999887665
No 469
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.09 E-value=1.1e+02 Score=19.36 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=12.7
Q ss_pred ceecCHHHHHHHHHHcCCceeE
Q 048707 76 GREMTEQDFKTLAKAAGFQGFK 97 (114)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~ 97 (114)
|..+..+-..+.|+++||.++.
T Consensus 24 gHd~gakvia~~l~d~GfeVi~ 45 (143)
T COG2185 24 GHDRGAKVIARALADAGFEVIN 45 (143)
T ss_pred ccccchHHHHHHHHhCCceEEe
Confidence 4445555666666666666543
No 470
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=21.07 E-value=1.1e+02 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++.+.+++++||++++.-.
T Consensus 257 ~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 257 ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHHHHHhccCCEEEEECC
Confidence 356777889999999998764
No 471
>PRK12472 hypothetical protein; Provisional
Probab=21.04 E-value=73 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 048707 27 KILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~ 47 (114)
+++.+|...+-||+.|||.|.
T Consensus 408 ev~~ri~~~~~p~ssiivsde 428 (508)
T PRK12472 408 EVLDRIAPTALPRSSIIVSDE 428 (508)
T ss_pred HHHHhhcccccCCceEEecCC
Confidence 689999999999999999995
No 472
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.92 E-value=43 Score=23.39 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHcCCcee
Q 048707 80 TEQDFKTLAKAAGFQGF 96 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~ 96 (114)
..+.|++.|+++||++.
T Consensus 221 e~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 221 EEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp STTSHHHHHHHTT-EEE
T ss_pred CcchHHHHHHHCCCEEE
Confidence 45799999999999873
No 473
>smart00463 SMR Small MutS-related domain.
Probab=20.77 E-value=1.3e+02 Score=16.33 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=20.5
Q ss_pred cccCChHHHHHHHHHHHHhCCCCC---EEEEEe
Q 048707 17 CHNWSEEACVKILKNCYEALPENG---KVIVAE 46 (114)
Q Consensus 17 lh~~~d~~~~~~l~~~~~aL~pgG---~lii~d 46 (114)
||.++-+++...|.+..+.+...| .+.|+.
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~ 38 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLKGLEQKLVIIT 38 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 688998888888877776555544 455544
No 474
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=20.72 E-value=1.7e+02 Score=16.22 Aligned_cols=55 Identities=5% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHHHHHHHHHHcCCceeEEEEcCCcee
Q 048707 27 KILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQDFKTLAKAAGFQGFKVVCSAFSTY 106 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (114)
-.+++..+.|++|+.|.|. .++. -+.+++..|.++.|.+.......++ .+
T Consensus 24 l~~kk~l~~l~~G~~l~V~---~dd~--------------------------~~~~di~~~~~~~G~~~~~~~~~~g-~~ 73 (81)
T PRK00299 24 MMVRKTVRNMQPGETLLII---ADDP--------------------------ATTRDIPSFCRFMDHELLAQETEQL-PY 73 (81)
T ss_pred HHHHHHHHcCCCCCEEEEE---eCCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCC-EE
Confidence 3466666777888876662 1221 0255678888899999987655433 34
Q ss_pred EEEEE
Q 048707 107 IMEFL 111 (114)
Q Consensus 107 ii~a~ 111 (114)
.+..+
T Consensus 74 ~~~I~ 78 (81)
T PRK00299 74 RYLIR 78 (81)
T ss_pred EEEEE
Confidence 33333
No 475
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.69 E-value=1.5e+02 Score=19.49 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEee
Q 048707 23 EACVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 23 ~~~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
+...++-+.+.++|+.|++++++-.
T Consensus 25 ~~I~~aa~~i~~~l~~G~Kvl~cGN 49 (176)
T COG0279 25 EAIERAAQLLVQSLLNGNKVLACGN 49 (176)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3456777788889999999999764
No 476
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=20.65 E-value=1.9e+02 Score=19.06 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+|...+.+.|.|.|..++++.
T Consensus 116 T~qIa~~l~~~l~p~gV~V~ieA 138 (180)
T TIGR00063 116 TQQIAEALQEILEPNGVAVVVEA 138 (180)
T ss_pred HHHHHHHHHHhhCCCCEEEEEEE
Confidence 44677777788999999999985
No 477
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.61 E-value=1.3e+02 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..++...+.++|+.||+|+++-.
T Consensus 44 I~~a~~~~~~~l~~ggrl~~~Ga 66 (296)
T PRK12570 44 IAQAVDKIVAAFKKGGRLIYMGA 66 (296)
T ss_pred HHHHHHHHHHHHHcCCeEEEECC
Confidence 45566677889999999988653
No 478
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=1.5e+02 Score=22.26 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=28.9
Q ss_pred eEEEecc----ccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 048707 9 DVIFMKW----ICHNWSEEACVKILKNCYEALPENGKVIVAECILP 50 (114)
Q Consensus 9 D~v~~~~----vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~ 50 (114)
|+.++-. ..|.-.++....+...+.+++.+||.++|--+-.+
T Consensus 182 DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~g 227 (427)
T COG1236 182 DVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALG 227 (427)
T ss_pred cEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 7777655 34444444445578888899999999999665443
No 479
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.39 E-value=1.5e+02 Score=21.77 Aligned_cols=87 Identities=15% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCCcc-eEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhcchhhhhccCCceecCHH
Q 048707 4 SIPKA-DVIFMKWICHNWSEEACVKILKNCYEALPENGKVIVAECILPVLPDPSLASKQVIHIDCIMLAHTTGGREMTEQ 82 (114)
Q Consensus 4 ~~p~~-D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 82 (114)
.+|.+ |.++....- +.-+++.++-|++....+-|+|.++..=..-.-..... . ..+=+-.++. + +-.++
T Consensus 57 ~f~~a~e~i~v~~f~-dil~~~iqe~L~~~n~I~IP~gSfv~Y~G~d~ie~~~~-v---P~fGnR~lLr-w----E~~~~ 126 (361)
T COG1759 57 KFPVADEVIIVDKFS-DILNEEIQEELRELNAIFIPHGSFVAYVGYDGIENEFE-V---PMFGNRELLR-W----EEDRK 126 (361)
T ss_pred hhchhheEEEechhH-HHhhHHHHHHHHHcCeEEecCCceEEEecchhhhhccc-C---cccccHhHhh-h----hcchh
Confidence 45556 555544433 33334455667777777888887776433211110000 0 0011112221 1 11566
Q ss_pred HHHHHHHHcCCceeEEEE
Q 048707 83 DFKTLAKAAGFQGFKVVC 100 (114)
Q Consensus 83 e~~~ll~~aGf~~~~~~~ 100 (114)
-...||++||.+.-+...
T Consensus 127 ~~~~lLekAgi~~P~~~~ 144 (361)
T COG1759 127 LEYKLLEKAGLRIPKKYK 144 (361)
T ss_pred hHHHHHHHcCCCCCcccC
Confidence 788999999998866544
No 480
>PRK10148 hypothetical protein; Provisional
Probab=20.30 E-value=96 Score=19.36 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 048707 27 KILKNCYEALPENGKVIV 44 (114)
Q Consensus 27 ~~l~~~~~aL~pgG~lii 44 (114)
+-+++++++|..||.++.
T Consensus 97 ee~~~~~~aLa~gg~v~m 114 (147)
T PRK10148 97 EEGKRWFDNLAANGKIEM 114 (147)
T ss_pred HHHHHHHHHhhCCCEEEe
Confidence 345788889999999874
No 481
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.28 E-value=1.3e+02 Score=20.93 Aligned_cols=20 Identities=5% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCCCEEEEEee
Q 048707 28 ILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 28 ~l~~~~~aL~pgG~lii~d~ 47 (114)
.+....+.|++||++++.-.
T Consensus 219 ~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 219 FSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred HHHHHHHHhCcCcEEEEecc
Confidence 45777889999999998754
No 482
>PRK13243 glyoxylate reductase; Reviewed
Probab=20.26 E-value=1e+02 Score=22.09 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=19.0
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhCCCCCEEEE
Q 048707 6 PKADVIFMKWICHNWSEEACVKILKNCYEALPENGKVIV 44 (114)
Q Consensus 6 p~~D~v~~~~vlh~~~d~~~~~~l~~~~~aL~pgG~lii 44 (114)
+++|+|++.--+ +++....+-++..+.|+||..++-
T Consensus 203 ~~aDiV~l~lP~---t~~T~~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 203 RESDFVSLHVPL---TKETYHMINEERLKLMKPTAILVN 238 (333)
T ss_pred hhCCEEEEeCCC---ChHHhhccCHHHHhcCCCCeEEEE
Confidence 346777654432 232222333566777888765543
No 483
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=20.22 E-value=1e+02 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 048707 81 EQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (114)
..+|.+-+++.||+.+-....
T Consensus 73 L~~w~~~l~~~GFkhV~~lT~ 93 (142)
T PF10673_consen 73 LNDWCEELKESGFKHVFYLTS 93 (142)
T ss_pred HHHHHHHHHhcCCcEEEEEec
Confidence 689999999999999866544
No 484
>PHA02126 hypothetical protein
Probab=20.18 E-value=70 Score=19.69 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=8.8
Q ss_pred CCCEEEEEee
Q 048707 38 ENGKVIVAEC 47 (114)
Q Consensus 38 pgG~lii~d~ 47 (114)
|||.|++.|.
T Consensus 52 pggalivadr 61 (153)
T PHA02126 52 PGGALIVADR 61 (153)
T ss_pred CCceEEEecH
Confidence 7999999985
No 485
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.17 E-value=1.1e+02 Score=17.60 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=10.6
Q ss_pred ecCHHHHHHHHHHcCCce
Q 048707 78 EMTEQDFKTLAKAAGFQG 95 (114)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~ 95 (114)
.++.+++.+.|+..||..
T Consensus 41 ~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 41 SRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp SS-HHHHHHHHHHTTTT-
T ss_pred CCCHHHHHHHHHhcCcCC
Confidence 456666666677777664
No 486
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=20.16 E-value=1.5e+02 Score=18.09 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCceeEEEEc
Q 048707 80 TEQDFKTLAKAAGFQGFKVVCS 101 (114)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (114)
...++.+.+.++||.++....+
T Consensus 16 ~~g~Il~~i~~~gf~I~~~k~~ 37 (135)
T smart00562 16 LIGEIISRFERKGFKIVAMKML 37 (135)
T ss_pred cHHHHHHHHHHCCCEEEEEeee
Confidence 3467888999999999988654
No 487
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.04 E-value=1.5e+02 Score=20.96 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEEe
Q 048707 25 CVKILKNCYEALPENGKVIVAE 46 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d 46 (114)
..+....+.++|+.||+|++.-
T Consensus 43 I~~av~~~~~~l~~gGrl~~~G 64 (291)
T TIGR00274 43 IAAAVEQIVQAFQQGGRLIYIG 64 (291)
T ss_pred HHHHHHHHHHHHhcCCEEEEEC
Confidence 3456667778899999998865
No 488
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=20.03 E-value=66 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=14.5
Q ss_pred HHHHHhCCCCCEEEEEeee
Q 048707 30 KNCYEALPENGKVIVAECI 48 (114)
Q Consensus 30 ~~~~~aL~pgG~lii~d~~ 48 (114)
+++.++|+.|+-++|.|.-
T Consensus 2 e~ai~al~~G~~Viv~D~~ 20 (194)
T PF00926_consen 2 EEAIEALKAGKPVIVVDDE 20 (194)
T ss_dssp HHHHHHHHTTS-EEEECSS
T ss_pred HHHHHHHHCCCeEEEEeCC
Confidence 5677888999999998863
No 489
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=20.00 E-value=1.9e+02 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 048707 25 CVKILKNCYEALPENGKVIVAEC 47 (114)
Q Consensus 25 ~~~~l~~~~~aL~pgG~lii~d~ 47 (114)
..+|...+.+.|.|.|..++++.
T Consensus 122 T~qIa~~l~~~l~p~gVaV~ieA 144 (188)
T PLN03044 122 TRQIADAIVESVEPLGVMVVVEA 144 (188)
T ss_pred HHHHHHHHHHhhCCCceEEEEEE
Confidence 44677777788999999999985
Done!