BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048709
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 133/168 (79%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
DTAGQERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I+L+GNK
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL + AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 212 bits (540), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 20 MIP-DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIK 78
++P DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IK
Sbjct: 11 LVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 70
Query: 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIIL 138
AQIWDTAGQERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I+L
Sbjct: 71 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 130
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
+GNKSDL + AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 131 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 133/176 (75%), Gaps = 1/176 (0%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D +FK+V+IGDS VGKS +LSRFTKNEF DSKSTIGVEF TRT+ I K IKAQIWDTA
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQERYRA+TSAYYRGA+GA++VYDI+K S+++ + ELR +AD ++ + LIGNKSDL
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKELECG 200
+ AV E+ FA++ L F+E SALN +NVD AF L+ IY +SK +++ G
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 141/180 (78%), Gaps = 1/180 (0%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQI 81
D DY+FK+V+IGDS VGKS +LSRFT++EF +SKSTIGVEF T+++ + N+KIIKAQI
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAGQERYRA+TSAYYRGA+GA++VYDITK+ SF+++ + ++ELR +ADS+I I+L+GN
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGN 201
KSDL + ++ D ++A+ + L F E SAL NV+ AF +LL EIY + +K+ N
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 132/168 (78%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
DTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I+L+GNK
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL + AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 132/169 (78%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQI
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I+L+GN
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
KSDL + AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 209 bits (533), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 131/168 (77%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
DTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I L+GNK
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL + AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 135/173 (78%), Gaps = 1/173 (0%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQERYR +TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I+L+GNKSDL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
+ AV ++ FAE L F E SAL+ NV+ AF +L EIY + S+K++
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/165 (61%), Positives = 129/165 (78%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++VYDI K ++++V R ++ELR HADS+I I L+GNKSDL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
+ AV ++ FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 199 bits (506), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 135/180 (75%), Gaps = 3/180 (1%)
Query: 20 MIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI 76
++P + ++VFKVV+IG+S VGK+ +LSRFT+NEF DS++TIGVEF TRTV + +
Sbjct: 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI 136
+KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++ V R ++EL HA+++I +
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
+L+GNKSDL V E+ FAE+ GL F E SAL+ NV+ AF +L+EI+A K+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 131/171 (76%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
++VFKVV+IG+S VGK+ +LSRFT+NEF DS++TIGVEF TRTV + + +KAQIWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++V+D+TK Q++ V R ++EL HA+++I ++L+GNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
V E+ FAE+ GL F E SAL+ NV+ AF +L+EI+A K+
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 127/170 (74%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+V+IGDS VGKS +LSRFT +EF +SKSTIGVEF TRT+ + +K IKAQIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++VYDI+K S+++ + ELR +AD ++ + LIGNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
+ AV ++ FA + + F+E SALN DNVD AF L+ I+ + K
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 117/169 (69%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
P Y+FK ++IGD VGKS +L +FT+ +F D TIGVEF TR + ++ + IK QI
Sbjct: 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++ + + R + + IILIGN
Sbjct: 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
K+DL V+ E+ +FAE+ GL F EASA G+NV+ AF ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 116/169 (68%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
P Y+FK ++IGD VGKS +L +FT+ +F D TIGVEF TR + ++ + IK QI
Sbjct: 24 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAGQ R+RAVT +YYRGA GA++VYDIT+R +++H++ + + R + + IILIGN
Sbjct: 84 WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
K+DL V+ E+ +FAE+ GL F EASA G+NV+ AF ++IY
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 111/164 (67%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
Y+FK ++IGD+ VGKS +L +FT F TIGVEF R +TI+ K IK QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
QE +R++T +YYRGA GA++VYDIT+R +F+H+ +E+ R H++S++ I+LIGNKSDL
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
V E+ FA + GL F E SA NV+ AF +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
++P + Y+FK ++IGD+ VGKS +L +FT F TIGVEF R V I+ K IK
Sbjct: 14 LVP-RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKL 72
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+ +E+ R H+ S++ I+LI
Sbjct: 73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
GNKSDL V E+ FA + GL F E SA NV+ AF +EIY
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
M P+ DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+++ +K +K
Sbjct: 2 MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
QIWDTAGQER+R +TS+YYRGA G ++VYD+T R SFD+V + ++E+ +A ++ +L+
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLV 120
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DLV V++++ E A+ G+ F E SA N NV+ AF + EI
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
+DY+FK+++IGDS VGK+ +L RF+++ F STIG++F+ RT+ ++ K IK QIWDT
Sbjct: 3 MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
AGQER+R +T+AYYRGA+G ++VYDIT +SFD++ + + HA + + +++GNK D
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
+ D VS E + A D G+ F E SA NV+ AFF L ++I A
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
M P+ DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK
Sbjct: 9 MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DL V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 114/166 (68%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGK+ +L RF+++ F STIG++F+ RT+ ++ K IK QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYDIT +SFD++ + + HA + + +++GNK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
D VS E + A D G+ F E SA NV+ AFF L ++I A
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 111/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++S+ +V + ++E+ +A ++ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ AF + EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 111/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++S+ +V + ++E+ +A ++ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ AF + EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 111/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 110/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D++FK +VIG + GKS +L +F +N+F DS TIGVEF +R V + K +K QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R+VT +YYRGA GA++VYDIT R++++ +A + + R A +I +IL GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V+ + FA++ L F E SAL G+NV+ AF + + I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 111/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
M P+ DY+FK+++IGDS VGK+ +L RF + + STIGV+F+ RT+ ++ K IK
Sbjct: 9 MNPE-YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DL V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++ K +K QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V ++E+ +A S++ +L+GNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
D V + EFA+ + F E SAL+ NV+ AF + ++I
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++ K +K QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V ++E+ +A S++ +L+GNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
D V + EFA+ + F E SAL+ NV+ AF + ++I
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 119/172 (69%), Gaps = 2/172 (1%)
Query: 20 MIP--DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKII 77
++P + DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++ K +
Sbjct: 11 LVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 70
Query: 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII 137
K QIWDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V ++E+ +A S++ +
Sbjct: 71 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 130
Query: 138 LIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
L+GNK DL D V + EFA+ + F E SAL+ NV+ AF + ++I
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 91 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+G K DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 124/181 (68%), Gaps = 5/181 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV IN K +K Q+WDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYD+T ++F ++ + + + HA+ +++L+GNKSD+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQEIYALSKKELECGNG 202
+ V+A+ A++ G+ F E+SA N DNV+ FF +L+QE S K + GNG
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-SNKLVGVGNG 195
Query: 203 K 203
K
Sbjct: 196 K 196
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D +FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV IN K +K QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYDIT ++F ++ + + + HA+ +++L+GNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 112/169 (66%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+ + D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + K +K Q
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
IWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ + + + R A +I IIL G
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
NK DL V+ + FA++ L F E SAL G+NV+ AF + ++I
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Query: 22 PD-KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
PD + D++FK+V++GD++VGK+ ++ RF F STIGV+F +T+ I K +K Q
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
IWDTAGQER+R +T +YYR A GA++ YDITKR SF V +E++R +A S+I +LIG
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
NKSDL ++ VS + AE + + E SA + NV+ AF R+ E+
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 107/160 (66%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 116/164 (70%), Gaps = 4/164 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ K+++IGDS VGKS +L RF +++F +TIG++F+ +TV IN K +K Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
ER+R +T+AYYRGA+G ++VYD+T ++F ++ + + + HA+ +++L+GNKSD+ +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 111/170 (65%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
++P DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +TV + K IK
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
QIWDTAGQERYR +T+AYYRGA+G +++YDI ++SF V +++ ++ + ++IL+
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DL D V AED A+D G F EASA NV F RL+ I
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 115/166 (69%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV IN K +K QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA G ++VYDIT ++F ++ + + + HA+ +++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 110/164 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + K +K QIWDTA
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R+VT +YYRGA GA++VYDIT R++++ + + + R A +I IIL GNK DL
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V+ + FA++ L F E SAL G++V+ AF + ++I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D++FK+++IGDS VGKS +L RF N F +TIGV+F+ RTV IN + +K QIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS YYRG G +VVYD+T +SF +V R + E+ + D R IL+GNK+D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKNDD 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
+ V ED +FA G+ E SA NV+ F + E+ +KK+
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVE-EMFNCITELVLRAKKD 175
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 107/167 (64%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD GKS ++ RF K++F +STIG F ++T+ +N +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
Y ++ YYRGA A++V+D+T + SF+ + V+EL+A + ++ + L GNKSDL+D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
V+AED +A++ GLFF E SA NV F+ + + + + E
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 115/166 (69%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV IN K +K Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA G ++VYD+T ++F ++ + + + HA+ +++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
P D+ +V++IG VGK+ ++ RFT + FC KST+GV+F+ +TV + K I+ QI
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + + ++ + +A ++L+GN
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 142 KSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
K D ++ + +FA+ G+ F EASA + NVD F +L+ +I
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 110/165 (66%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +T+ N K IK QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
AGQERYR +T+AYYRGA+G +++YDIT +SF+ V +++ ++ + +++L+GNK D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ D VS+E + A+ G F EASA + NV F RL+ I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + K +K QIWDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
G ER+R+VT +YYRGA GA++VYDIT R++++ + + + R A +I IIL GNK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V+ + FA++ L F E SAL G++V+ AF + ++I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 104/160 (65%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D++FK+V+IG++ VGK+ ++ RFT+ F +TIGV+F +TV IN + +K QIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
GQER+R++T +YYR A ++ YDIT +SF + + E+ +A + + +L+GNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
+ VS + EF+E Q +++ E SA DNV+ F L
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T++V ++ +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +++F V+EL+ A SI I L GNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V E+ +A+D L F E SA NV+ F + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 107/165 (64%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +TV + K +K QIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
AGQERYR +T+AYYRGA+G +++YDIT +SF+ V +++ ++ + ++IL+GNK D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ + V E AE G F EASA +V AF RL+ I
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV +++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+ ++ YYRG+ AV+VYDITK+ SF + + V+EL+ H +I + + GNK DL D+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
V +D E+AE G E SA N N++ F + ++I L E
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
DY FK+++IG+S+VGK+ L R+ + F ST+G++F+ +T+ N K IK QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
AG ERYR +T+AYYRGA G ++ YDIT +SF+ V +++ ++ + +++L+GNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGN 201
D VS+E + A+ G F EASA + NV F RL+ I + L+ +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTAD 181
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 100/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F V+EL+ A +I I L GNK+DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF V+EL+ A +I I L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 3/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++G++AVGKS I+ RF N+F + + TIG F T+ VTIN +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
+ ++ YYR A A+VVYD+TK QSF V+EL A I I L+GNK D +
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 150 A---VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V+ E+ + AE++GL F E SA G+NV+ F + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F V+EL+ A +I I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STI F T+TV ++ +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F V+EL+ A +I I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AV ++ +A+D L F E SA NV+ F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 96/161 (59%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV +++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+RA+ YYRG+ A++VYDITK ++F + V ELR H SI + + GNK DL D+
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V D ++A+ F E SA N N++ F + + I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 95/161 (59%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV +++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+RA+ YYRG+ A++VYDITK ++F + V ELR H SI + + GNK DL D+
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V D ++A+ F E SA N N++ F + + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQI 81
D D FKV+++GDS VGK+ +L RF F + ST+G++F+ + + ++ +K Q+
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
WDTAGQER+R+VT AYYR A +++YD+T + SFD++ + E+ +A + ++L+GN
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
K D V ED + A++ GL F E SA G NVD AF + +E+ S K
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 86/115 (74%)
Query: 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++ K IK QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
R +TS+YYRGA G +VVYD+T ++SF++V + ++E+ +A ++ +L+GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 101/154 (65%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+V +G+ AVGK+ I++RF + F + +STIG++F ++T+ ++ ++ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + A+VVYDIT RQSF++ + ++++ + I L+GNK+DL D+
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
V+ E+ + A++ F E SA G N+ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V N++
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
+ Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V + +L+A+A +
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+LIGNK+DL D V+ E A+ G+ + E SA G NV+ A LL I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+V+ GD+AVGKS L R KNEF + +T+GV+FQ +T+ ++ + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y+R A G +++YD+T +SF ++ V+ + A ++ I+L+GNK+D+ D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 149 WAVSAEDVV------EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
A + V + A G F E SA +G N+ A L +E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 100/157 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + I+ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF + ++++R S + I+L+GNK+DL D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----------K 75
DY+ K + +GDS VGK+ +L ++T +F +T+G++F+ + V + +
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
I Q+WDTAG ER+R++T+A++R A+G ++++D+T QSF +V + +L+ HA S +
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+L GNKSDL D AV E+ E AE G+ + E SA NG N+ A LL I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 102/157 (64%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF ++ ++++R S + I+L+GNK+DL D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
++ E+ + A++ + F E SA G NV F R+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 101/157 (64%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF ++ ++++R S + I+L+GNK+DL D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K+++IG+S VGKS +L RFT + F + +TIGV+F+ +T++++ K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
R+R +T +YYRGA G ++VYD+T+R +F + + EL + + I L+GNK D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + ++FA F EASA D V AF L+++I
Sbjct: 136 R-EVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 100/157 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF + ++++R S + I+L+GNK+DL D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 99/157 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + I+ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF + ++++R S + I+L+GNK+DL D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V +++
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSI 134
+ Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V + +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
I+LIGNK+DL D V+ E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 KELE 198
K +E
Sbjct: 189 KCVE 192
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V +++
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
+ Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V + +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
I+LIGNK+DL D V+ E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 KELE 198
K +E
Sbjct: 189 KCVE 192
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 99/157 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF + ++++R S + I+L+GNK+DL D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 99/157 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF + ++++R S + I+L+GNK+DL D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
VS E+ A++ + F E SA G NV F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V +++
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
+ Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
I+LIGNK+DL D V+ E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 195 KELE 198
K +E
Sbjct: 189 KCVE 192
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V +++
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSI 134
+ Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
I+LIGNK+DL D V+ E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 195 KELE 198
K +E
Sbjct: 189 KCVE 192
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+G F T+ + I K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V V+ELR + I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ +AE G SA ++ F L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+FK++VIGDS VGK+ + RF F +++TIGV+F+ R V I+ + IK Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 88 ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDL 145
ER+R ++ YYR V VYD+T SF + +EE + H ++ I IL+GNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
V + +FA+ + E SA N D+V+ F L ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+P +FK++VIGDS VGK+ + RF F +++TIGV+F+ R V I+ + IK Q
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 81 IWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIIL 138
+WDTAGQER+R ++ YYR V VYD T SF + +EE + H ++ I IL
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL 141
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
+GNK DL V + +FA+ E SA N D+V+ F L ++
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+ F T+ + I K + IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V V+ELR + I + ++GNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ +AE G SA ++ F L + +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+ F T+ + I K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V V+ELR + I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ +AE G SA ++ F L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 101/164 (61%), Gaps = 11/164 (6%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAG 86
+ KV+++GDS VGK+ ++ R+ +++ K+TIG +F T+ VT++ K+ Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNK 142
QER++++ A+YRGA V+VYD+T SF+++ +E HA+ + +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 143 SDLVDMWAV----SAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
D + + SA+++ + D LF + SA N NVDTAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLT--SAKNAINVDTAF 169
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 40/199 (20%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------- 72
+K V++G+S+VGKS I+ R TK+ F ++ +TIG F T V +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 73 ---------------------NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111
N IK IWDTAGQERY ++ YYRGA A+VV+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 112 KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEAS 171
+ D V +L+ S+ IIL+ NK D + + V +V ++A+D L F + S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 172 ALNGDNVDTAFFRLLQEIY 190
A G N+ F+ L +EIY
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K+VV+G+ AVGKS ++ R+ K F D K TIGV+F R + +N + ++ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
+ A+T AYYRGA V+V+ T R+SF+ ++ E++ A I L+ NK DL+D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
+ E+ A+ L F S NV F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+FK++++GD VGKS +++R+ N+F TIGVEF + + ++ + QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ +E +AD S +++GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
D+ + VS E+ + +D G + + E SA + NV AF ++ I A
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ KV+++GD VGKS +++R+ N+F + TIGVEF R + ++ + + QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
ER++++ + +YRGA ++ + + RQSF+++ +E +AD +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
D D + E E+ + E SA + NV AF ++++ A+ ++
Sbjct: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+FKV+++GD VGKS +++R+ N+F TIGVEF + + ++ + QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ +E +AD S +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
D+ + VS E+ + D G + + E SA + NV AF ++ + A
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+FKV+++GD VGKS +++R+ N+F TIGVEF + + ++ + QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ +E +AD S +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
D+ + VS E+ + D G + + E SA + NV AF ++ + A
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A E+ LR D ++ +L+GNKSDL D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
VS E+ AE + + E SA NVD FF L++EI A
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A E+ LR D ++ +L+GNKSDL D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
VS E+ AE + + E SA NVD FF L++EI A
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A E+ LR D ++ +L+GNKSDL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
VS E+ AE + + E SA NVD FF L++EI A
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
D + + + + E SA NV+ AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A E+ LR D ++ +L+GNKSDL D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
VS E+ A+ + + E SA NVD FF L++EI A
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A E+ LR D ++ +L+GNKSDL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
VS E+ AE + + E SA NVD FF L++EI A
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y+R G ++V+ IT+ +SF A E+ LR A+ I ++++GNKSDL +
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V E+ AE+ G+ + E SA NVD FF L++EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++ + ++ I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y+R G ++V+ IT+ +SF A E+ LR A+ I ++++GNKSDL +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V E+ AE+ G+ + E SA NVD FF L++EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI-IKAQIWDTAGQ 87
K+VV+GD A GK+ + + F + F K TIG++F R +T+ + + QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA---RGVEELRAHADSSIRIILIGNKSD 144
+ Y GA G ++VYDIT QSF+++ V+++ +++ + L+GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192
L M + E + F ++ G SA GD+V F ++ EI +
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
+Y + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+K+ +IGD VGK+ ++R F + +T+G V + +IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
E+ + YY GA GA++ +D+T R + ++AR V+E +A + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
+S + V+E + + + E SA N F L
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 122
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 123 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 135 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++ +D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 126 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 131
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 132 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + E+++ DS + ++L+GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R E +T+GVE N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ +V F + L + + SA + N + F L +++
Sbjct: 135 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ +
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ + F + L + + SA + N + F L +++
Sbjct: 125 -KVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ +
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 123
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ + F + L + + SA + N + F L +++
Sbjct: 124 -KVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V +L +I I+L GNK D+ +
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 131
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A+ + F + L + + SA + N + F L +++
Sbjct: 132 -KVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KVV++G VGK+ + +F + EF T+ + ++ VT+ + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR-AHADSSIRIILIGNKSDLVDM 148
Y + ++ G G V+VY +T SF + ++L H + + ++L+GNK+DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A + + AE G F E+SA F +++QEI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F + V ++ + +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA ++ + + + S+++VA+ + ELR H + IIL+G K DL D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRD 124
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+ + G + VGKS ++ RF F ++ T+ ++ + TI+ +++ +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV---ARGVEELRAHADSSIRIILIGNKSDLV 146
+ R G V+VYDIT R SF+ V ++E++ ++ +IL+GNK+DL
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
VS E+ + A + F E SA G+ N+ F+ L +E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F + V +N + +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA ++ + + + S+++V++ + EL+ H + I+L+G K DL D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRD 126
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTK--NEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW--DTA 85
KV V+G++ VGKS ++S FT ++F D T GVE VTI + +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL---RAHADSSIRIILIGNK 142
G + Y+ S Y+ G A++V+D++ +SF+ E L R + +R +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 143 SDLVDM-WAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIY 190
+DL V + ++A L FF ++ G + D F + Y
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K V +GD AVGK+ +L +T N+F D T+ F V ++ +I+ +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA V+ + + + S+++V + + ELR A ++ I+L+G K DL D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F + TI ++ + V ++ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++++ +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
V E A F E+SA + NV+ F+ L+++I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 41 KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F ++ F D TI + T+ +++ + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
G ++V+ I RQSF+ V + + LR ++L+GNK+DL V + F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
+ + EASA NVD AF +L++ + ++EL
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F V ++ + +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA ++ + + + S++++ + + EL+ H I I+L+G K DL D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRD 124
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 41 KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F ++ F D TI + T+ I+ + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
G ++V+ +T R SF+ + + + LR +ILIGNK+DL V+ E+ +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
A + + EASA NVD AF L++ I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNKSDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++SK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+ E+R H S+ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
K+ K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WD
Sbjct: 3 KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 61
Query: 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNK 142
TAGQE Y + Y +++ + + SF++V A+ E+R H ++ IIL+G K
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTK 120
Query: 143 SDLVD----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
DL D + + + + QGL + E SAL + T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ +I I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 123
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNKSDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF + E+++ DS + ++L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
V + E A+ G+ F E SA V+ AF+ L++EI K+L
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++SK + +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+ E+R H S+ IIL+G K DL D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 127
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + E+++ DS + ++L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ F E SA VD AF+ L++EI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++SK + +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+ E+R H S+ IIL+G K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+N + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V G + L I I+L+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
+S E+ AE F E+SA F R++ E K + C GK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE---AEKMDGACSQGK 178
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 41 KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + + +N F + TI ++ + V I+ + I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVDMWAVSAEDVVEF 159
G + V+ I +SF+ + + E+++ DS + ++L+GNK DL V + +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
A G+ + E SA V+ AF+ L++EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 90
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 132
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 140
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F + TI F T+ +T+N + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V G + L I I+L+GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
+S E+ AE F E+SA F R++ E
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+ E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
D + + + + QGL + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+ E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
D + + + + QGL + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+ E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
D + + + + QGL + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 128
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GN+ DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + +I ++ + V I+ + I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 127
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGK+ + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+N + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V G + L I I+L+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
+S E+ AE F E+SA F R++ E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + +I ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
V + + A G+ + E SA V+ AF+ L++E
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+N + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V G + L I I+L+GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
+S E+ AE F E+SA F R++ E
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N + T+ + + V ++ K + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM 148
Y + Y ++ + + SF++V A+ E+R H + I+L+G K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD- 121
Query: 149 WAVSAEDVVEFAEDQGL 165
+D +E D+ L
Sbjct: 122 ----DKDTIERLRDKKL 134
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H + I+L+G K DL D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 MWAVSAEDVVEFAEDQGL 165
+D +E D+ L
Sbjct: 123 -----DKDTIERLRDKKL 135
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H + I+L+G K DL D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 MWAVSAEDVVEFAEDQGL 165
+D +E D+ L
Sbjct: 123 -----DKDTIERLRDKKL 135
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++ K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F D TI + T I+++
Sbjct: 6 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILD 64
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R + LR S +IL+
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ + V+ + E A + + E SA + NVD F L++ I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+ E+R H ++ IIL+G K DL D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 124
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + + QGL + E SAL + T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 35/187 (18%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKR-------------------QSFDHV-ARGVEELRA 128
Y + Y +G DIT R SF++V A+ E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 129 HADSSIRIILIGNKSDLVD----MWAVSAEDVVEFAEDQGLFFS---------EASALNG 175
H ++ IIL+G K DL D + + + + QGL + E SAL
Sbjct: 125 HCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 176 DNVDTAF 182
+ T F
Sbjct: 184 RGLKTVF 190
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F D TI + T I+++
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R + LR S +IL+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ + V+ + E A + + E SA + NVD F L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KVV++GD GK+ +L F F T+ + + + K + IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDL 145
Y + +Y A ++ +D+T SFD++ R E+ H + II++G K+DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDL 150
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V + + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F + TI ++ T I+++
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILD 69
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R + LR S +IL+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ + V+ + E A + + E SA + NVD F L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F + TI + T I+++
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R + LR S +IL+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ + V+ + E A + + E SA + NVD F L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K+VV+GD AVGK+ +L F+K E T+ F N + I +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + + R SFD+++ E H + + +L+G K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K+VV+GD AVGK+ +L F+K E T+ F N + I +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + + R SFD+++ E H + + +L+G K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 138
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+VV+GDS GK+ +L F K+ F + T+ E T + I+++ I+ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V + + + +++L+G KSDL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EFQTRTVTINSKIIKAQIWDTAGQE 88
K+VV+GDS GK+ +L F K+ CF V E T + I+++ I+ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKD--CFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V + + + +++L+G KSDL
Sbjct: 67 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EFQTRTVTINSKIIKAQIWDTAGQE 88
K+VV+GDS GK+ +L F K+ CF V E T + I+++ I+ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKD--CFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 82
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V + + + +++L+G KSDL
Sbjct: 83 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 139
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 123
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
++V V G VGKS ++ RF K F T+ ++ + ++ + I QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE---ELRAHADSSIRIILIGNKSDL 145
++ A+ ++VY IT RQS + + E E++ + SI I+L+GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
V + + A F E SA NV L QE+ L K+
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVK----ELFQELLNLEKR 167
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDL 141
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K V++GD AVGK+ ++ +T N + + T F + V+++ + ++ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDL 145
+ + Y ++ + + SF +V+ + V E+R H + IIL+G +SDL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDL 136
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 122
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+VV+GD A GK+ +L F+K+EF T+ E + ++ K ++ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + + S +++ + V E++ H ++ IIL+ NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 41 KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F F TI +F + + ++S +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
G ++VY + +QSF + ++ +R + +IL+GNK DL VS+ +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AE+ G F E SA + VD F +++++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 131
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 123
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++ + II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + ++ RA I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++ + II +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + ++ RA I IIL
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV VS + A F E SA NV F +++++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++ + II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + ++ RA I IIL
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++ + II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + ++ RA I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFT-KNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
+++VV++GD VGK+ + S F K E D +G + RT+T++ + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQER--DLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 87 QERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKS 143
E+ S + +G V+VY I R SF+ + ++ R H + IIL+GNK+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
DL VS E+ A F E SA NV F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++ K ++ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
Y + Y ++ + I S +++ H ++ IIL+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
++P ++ ++G GK+ ++ +F D T+G F R VT + IK
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK- 70
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
IWD GQ R+R++ Y RG V + D R+ + + L I +++
Sbjct: 71 -IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
+GNK DL + A+ + ++E +D+ + S DN+D L+Q
Sbjct: 130 LGNKRDLPN--ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGQ 54
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 113 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 113 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L + + F + T+ + +VT+ K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF +V V EL+ +A ++ +LIG + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 147 D 147
D
Sbjct: 136 D 136
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 124
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 125 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 126 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 434
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 435 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N+F + T+ + TV I + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 148 ------------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + + + TV I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N+ + T+ + TV I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 148 ------------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I + ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V + V E+ H + +L+G + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
++ E + A D + + + E SAL + F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQE 88
+++ +G A GK+ IL + + S +TI V F TVT K +K +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
+ R + YY G G + V D R D + + + + IILI NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Query: 148 MWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
A ++ E D+ + + A +GD +
Sbjct: 116 --AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
++P KV+++G GK+ IL +F+ NE S TIG + + IN+ +
Sbjct: 14 LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RF 68
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
+WD GQE R+ + YY +VV D T R+ + ++ AH D +++
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 128
Query: 139 IGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
NK D+ + ++ ++ +F +D AL G+ +
Sbjct: 129 FANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 171
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 56
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 114
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 115 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 151
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 126 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
P + K+V++GD GK+ +L K+ C+ ++ + F+ T + + + ++
Sbjct: 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 77
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
+WDT+G Y V Y + ++ +DI++ ++ D + S R++LI
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
Query: 140 GNKSDL 145
G K+DL
Sbjct: 138 GCKTDL 143
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 57
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 115
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L D A+ ++ E D+ + + A +GD +
Sbjct: 116 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 152
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
P + K+V++GD GK+ +L K+ C+ ++ + F+ T + + + ++
Sbjct: 4 PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 60
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
+WDT+G Y V Y + ++ +DI++ ++ D + S R++LI
Sbjct: 61 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 120
Query: 140 GNKSDL 145
G K+DL
Sbjct: 121 GCKTDL 126
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
P + K+V++GD GK+ +L K+ C+ ++ + F+ T + + + ++
Sbjct: 5 PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 61
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
+WDT+G Y V Y + ++ +DI++ ++ D + S R++LI
Sbjct: 62 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 121
Query: 140 GNKSDL 145
G K+DL
Sbjct: 122 GCKTDL 127
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN+ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
++ ++ +F +D AL G+ +
Sbjct: 132 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN+ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
++ ++ +F +D AL G+ +
Sbjct: 132 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
++P ++ ++G GK+ ++ +F D T+G F R +T + IK
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK- 70
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
+WD GQ R+R++ Y RG V + D ++ + + L I +++
Sbjct: 71 -LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
+GNK DL A+ ++++E +D+ + S DN+D L+Q
Sbjct: 130 LGNKRDLPG--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN+ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNVEE--IVINNT--RFLMWDIGGQES 77
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 136
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
++ ++ +F +D AL G+ +
Sbjct: 137 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA------RGVEELRAHADSSIRIILIGNK 142
R R + Y++ G + V D R+ VA V+ELR ++L NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-----LLLFANK 127
Query: 143 SDLVDMWAVS 152
DL + A+S
Sbjct: 128 QDLPNAMAIS 137
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
++ ++G GK+ ++ +F D T+G F R +T + IK +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
R+R++ Y RG V + D ++ + + L I ++++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 148 MWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
A+ ++++E +D+ + S DN+D L+Q
Sbjct: 148 --ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K +F T+ E V ++ + ++ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + I S ++V H + IIL+G K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDL 126
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
+++++G A GK+ IL + E + TIG +T + + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
R + YY G + V D R+ D + + + IIL+ NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN- 132
Query: 149 WAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAF 182
A+SA +V E ++ F A GD + F
Sbjct: 133 -AMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGF 170
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 130
Query: 146 VDMWAVSAEDVVE 158
+ A++A ++ +
Sbjct: 131 PN--AMNAAEITD 141
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 129
Query: 146 VDMWAVSAEDVVE 158
+ A++A ++ +
Sbjct: 130 PN--AMNAAEITD 140
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 146 VDMWAVSAEDVVE 158
+ A++A ++ +
Sbjct: 114 PN--AMNAAEITD 124
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 278
Query: 146 VDMWAVSAEDVVE 158
+ A++A ++ +
Sbjct: 279 PN--AMNAAEITD 289
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLV 146
R R++ YYR G + V D R AR V + + D + ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 131
Query: 147 DMWAVSAEDVVE 158
+ A+SA ++ E
Sbjct: 132 E--AMSAAEITE 141
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
R R++ YYR G + V D R AR V + R + +R ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGE-AREVMQ-RMLNEDELRNAVWLVFANKQDL 130
Query: 146 VDMWAVSAEDVVE 158
+ A+SA ++ E
Sbjct: 131 PE--AMSAAEITE 141
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLV 146
R R++ YYR G + V D R AR V + + D + ++ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 114
Query: 147 DMWAVSAEDVVE 158
+ A+SA ++ E
Sbjct: 115 E--AMSAAEITE 124
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + V+ RA + IIL+GNKSDLV
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ A F E SA NV F ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + V+ RA + IIL+GNKSDLV
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ A F E SA NV F ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++ + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + V+ RA + IIL+GNKSDLV
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
VS ++ A F E SA NV F ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSD 144
+ R + YY+ + V D R D + EEL + + +R +++ NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
L A+S +V E +++ + + A NGD +
Sbjct: 130 LPQ--AMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGL 166
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F NE S TIG + V N+ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSP-TIGSNVE-EIVVKNTHFL---MWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
R+ + YY ++V D R+ + + AH D +LI NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKG- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
++A ++ ++ +D AL G+ +
Sbjct: 132 -CMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW 82
D +FKV+++G+S VGKS + F + + + R + ++ + ++ IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 83 ---DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSIRI 136
D G R + + ++V+ +T R+SF V + LRA H D + +
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 133
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFA 160
IL+GNKSDL VS E+ A
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLA 157
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW 82
D VFKV+++G+S VGKS + F + + + R + ++ + +I IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 83 ---DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSI 134
D G Q+ A+ ++V+ +T R+SF V + LRA H D +
Sbjct: 70 EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 120
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFA 160
+IL+GNKSDL VS E+ A
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLA 146
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSD 144
+ R + Y++ G + V D R D V +EL R + +R +++ NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 145 LVDMWAVSAEDVVE 158
L + A++A ++ +
Sbjct: 133 LPN--AMNAAEITD 144
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 13/167 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL +F + TI T+ + K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDI-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
R+ Y+ G + V D RQ R ++ L + +LI NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
A+S+ + E E SA+ G+N+ LL +I
Sbjct: 132 --ALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDI 176
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 115
Query: 146 VDMWAVSAEDVVE 158
+ A++A ++ +
Sbjct: 116 PN--AMNAAEITD 126
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW-- 82
VFKV+++G+S VGKS + F + + + R + ++ + +I IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 83 -DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSIRI 136
D G Q+ A+ ++V+ +T R+SF V + LRA H D + +
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 112
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
IL+GNKSDL VS E+ A E SA N F
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
+ R + Y++ G + V D R+ A ++++ + ++L+ NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 148 MWAVS 152
VS
Sbjct: 145 AMPVS 149
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL R E +K TIG +T ++ K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARGVEELRAHADSSIRIILIGNK 142
R YY + V D T + H+ EEL+ A +++ NK
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 143 SDLVDMWAVSAEDV------VEFAEDQGLFFSEASALNGDNV 178
D A+SA +V VE +D+ +SA+ G+ +
Sbjct: 129 QDQPG--ALSASEVSKELNLVEL-KDRSWSIVASSAIKGEGI 167
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL +F + TI T+ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDL 145
R+ Y+ G + V D RQ R ++ L + +LI NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL +F + TI T+ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDL 145
R+ Y+ G + V D RQ R ++ L + +LI NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 30 KVVVIGDSAVGKSQILSRF--TKNEFCFDSKSTIGVEFQTRTVTINSKI---IKAQIWDT 84
K+ ++G++ GK+ +L + TK +T+G++ + + I K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS 143
AG+E + + + + VYD++K Q+ D + ++A A SS +IL+G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 144 DLVD 147
D+ D
Sbjct: 121 DVSD 124
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 30 KVVVIGDSAVGKSQILSRF--TKNEFCFDSKSTIGVEFQTRTVTINSKIIK---AQIWDT 84
K+ ++G++ GK+ +L + TK +T+G++ + + I K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS 143
AG+E + + + + VYD++K Q+ D + ++A A SS +IL+G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP-VILVGTHL 122
Query: 144 DLVD 147
D+ D
Sbjct: 123 DVSD 126
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG F V + I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLV 146
R R++ YY G + V D R AR V + + D + ++ NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELCNAAWLVFANKQDLP 131
Query: 147 DMWAVSAEDVVE 158
+ A+SA ++ E
Sbjct: 132 E--AMSAAEITE 141
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
+ ++G GKS + +F F + + + + T++ + + ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS---SIRIILIGNKSDLVD 147
R Y A +VVY + RQSFD + +E L HA SI +L+GNK D+
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQE 188
V+ + V A G F E SA L+ ++V F ++E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL R E + TIG F TVT K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIR---IILIGNKSD 144
R YY + V D R D + EL A + +R +++ NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 145 L 145
+
Sbjct: 115 M 115
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 41 KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS ++ RF K F TI ++ + ++ + + QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 101 ALGAVVVYDITKRQSFDHVA---RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV 157
++V+ +T +QS + + + + +++ + I ++L+GNK D V +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQR-EVDTREAQ 137
Query: 158 EFAEDQGLFFSEASALNGDNVDTAFFRLL 186
A++ F E SA NV F LL
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D +++++G GK+ +L + + S T F ++V S+ K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSV--QSQGFKLNVWDIG 69
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSD 144
GQ + R +Y+ + V D R+ F+ + E L S + +++ NK D
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
L+ A A ++ E D+ SAL G+ V + + + A KKE
Sbjct: 130 LLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA-KKKE 183
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
D +++++G GK+ +L + + S T F ++V S+ K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSV--QSQGFKLNVWDIG 68
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSD 144
GQ + R +Y+ + V D R+ F+ + E L S + +++ NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
L+ A A ++ E D+ SAL G+ V + + + A K
Sbjct: 129 LLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 181
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 40 GKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR 99
GK+ IL +F + TI T+ + K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 100 GALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDL 145
G + V D RQ R ++ L + +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
+++++G GK+ +L + + S T F ++V S+ K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSV--QSQGFKLNVWDIGGQRK 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLVDM 148
R +Y+ + V D R+ F+ + E L S + +++ NK DL+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT- 119
Query: 149 WAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
A A ++ E D+ SAL G+ V
Sbjct: 120 -AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 153
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
+++++G GK+ IL R E + TIG F TVT K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIR---IILIGNKSD 144
R YY + V D R D + EL A + +R +++ NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 145 L 145
+
Sbjct: 117 M 117
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 31 VVVIGDSAVGKSQILSRF-TKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
V+ +G GK+ I+++ N + TIG + S + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK----FKSSSLSFTVFDMSGQGR 79
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLV 146
YR + YY+ + V D + R ++ L H D I I+ NK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 147 DMWAVSAEDV-----VEFAEDQGLFFSEASALNGDNV 178
D AV++ V +E +D+ + A+ G+ +
Sbjct: 140 D--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
+++++G GK+ IL R E + TIG F TVT K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKR 113
R YY + V D R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
+++++G GK+ +L + + S T F ++V S+ K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSV--QSQGFKLNVWDIGGLRK 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLVDM 148
R +Y+ + V D R+ F+ + E L S + +++ NK DL+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT- 119
Query: 149 WAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
A A ++ E D+ SAL G+ V
Sbjct: 120 -AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 153
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIK 78
+ IP+ ++ V+GD+ GKS ++ RF + K+ E + + ++ +
Sbjct: 3 RSIPE-----LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHL 55
Query: 79 AQIWDTAGQERYRAVTSAYYRGALGAVV-VYDITKRQSFDHVAR---GVEELRAHADSSI 134
I + AG A + G AV+ V+ + SF V+R + LR +
Sbjct: 56 VLIREEAG------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-------FSEASALNGDNVDTAFFRLLQ 187
+ L+G + D + S+ VV A + L + E A G NVD F + Q
Sbjct: 110 ALALVGTQ----DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 165
Query: 188 EIYALSKKE 196
++ L K++
Sbjct: 166 KVVTLRKQQ 174
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIK 78
+ IP+ ++ V+GD+ GKS ++ RF + K+ E + + ++ +
Sbjct: 3 RSIPE-----LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHL 55
Query: 79 AQIWDTAGQERYRAVTSAYYRGALGAVV-VYDITKRQSFDHVAR---GVEELRAHADSSI 134
I + AG A + G AV+ V+ + SF V+R + LR +
Sbjct: 56 VLIREEAG------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-------FSEASALNGDNVDTAFFRLLQ 187
+ L+G + D + S+ VV A + L + E A G NVD F + Q
Sbjct: 110 ALALVGTQ----DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
Query: 188 EIYALSKKE 196
++ L K++
Sbjct: 166 KVVTLRKQQ 174
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS 74
+Q ++P D +V+++G GK+ IL R + + T+
Sbjct: 11 KQTLGLLP--ADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTV-----GVNLETLQY 63
Query: 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-S 133
K I ++WD GQ R Y+ + V D T R D + EL A D
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDE 120
Query: 134 IR---IILIGNKSDLVDMWAVSAEDVVE 158
+R +++ NK DL D A S ++ E
Sbjct: 121 LRKSLLLIFANKQDLPD--AASEAEIAE 146
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSK---STIGVEFQTRTVTINSKIIKAQIWDTAG 86
K++++G S GKS + S N FD++ +TI VE N + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 64
Query: 87 Q----ERYRAVTSAYYRGALGAVV-VYDITKRQSFDHV---ARGVEELRAHADSSIRIIL 138
Q E Y + + ++ V+D+ + + A+ +++LR ++ + +I +
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFV 123
Query: 139 IGNKSDLVDM 148
+ +K DLV +
Sbjct: 124 LLHKMDLVQL 133
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 21 IPDKIDYV--FKVVVIGDSAVGKSQILSRFTKNEF 53
I + +DY+ F ++ G S VGKS ILSR T E
Sbjct: 156 IDELVDYLEGFICILAGPSGVGKSSILSRLTGEEL 190
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINS---KIIKAQIWDTAG 86
VV+ G VGKS +L T +K I F TR + + + QI DT G
Sbjct: 170 VVIAGHPNVGKSTLLKALT------TAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223
Query: 87 ------QER----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-----RAHAD 131
ER +A+ + Y G L + ++D + +H +EE H +
Sbjct: 224 LLDRPISERNEIEKQAILALRYLGNL-IIYIFDPS-----EHCGFPLEEQIHLFEEVHGE 277
Query: 132 -SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
+ +++ NK D+ D + + +F +++GL + SAL G +D +++ +
Sbjct: 278 FKDLPFLVVINKIDVADEENIKR--LEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335
Query: 191 ALSKK 195
L++K
Sbjct: 336 PLAEK 340
>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
Length = 184
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
P IDY+ + G + +G Q ++CF KS + + + + N Q
Sbjct: 87 PQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPAN----LIQQ 142
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH 118
D + + + + GA+++++ T++Q H
Sbjct: 143 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSH 179
>pdb|2KXT|A Chain A, Nmr Structure And Calcium-Binding Properties Of The
Tellurite Resistance Protein Terd From Klebsiella
Pneumoniae
pdb|2KXV|A Chain A, Nmr Structure And Calcium-Binding Properties Of The
Tellurite Resistance Protein Terd From Klebsiella
Pneumoniae
Length = 200
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 2 NKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGK---SQILSRFTK--NEFCFD 56
N+ GDG D + + +P +D + VV I D+ + Q+ F + N+ D
Sbjct: 79 NRTGEGDGDDESLKIKLDAVPGDVDKIIFVVTIHDAQARRQSFGQVSGAFIRLVND---D 135
Query: 57 SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111
+++ + T + + ++ +++ G+ ++RAV Y G Y I
Sbjct: 136 NQTEVARYDLTEDASTETAMLFGELYRHNGEWKFRAVGQGYAGGLASVCAQYGIN 190
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 145 LVDMWAVSAEDVVEFAEDQG 164
LVDMW ++ D+ E+ ED G
Sbjct: 250 LVDMWDITIGDIAEWGEDAG 269
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 145 LVDMWAVSAEDVVEFAEDQG 164
LVDMW ++ D+ E+ ED G
Sbjct: 250 LVDMWDITIGDIAEWGEDAG 269
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 31/129 (24%)
Query: 102 LGAVVVYDITKRQSFD------HVARGVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A GVE ++A D+ I R++ I +KS
Sbjct: 126 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 185
Query: 145 -------------LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI-Y 190
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 186 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 245
Query: 191 ALSKKELEC 199
A+S LE
Sbjct: 246 AISSPLLET 254
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 31/129 (24%)
Query: 102 LGAVVVYDITKRQSFD------HVARGVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A GVE ++A D+ I R++ I +KS
Sbjct: 130 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 189
Query: 145 -------------LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI-Y 190
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 190 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 249
Query: 191 ALSKKELEC 199
A+S LE
Sbjct: 250 AISSPLLET 258
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 31/129 (24%)
Query: 102 LGAVVVYDITKRQSFD------HVARGVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A GVE ++A D+ I R++ I +KS
Sbjct: 116 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 175
Query: 145 -------------LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI-Y 190
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 176 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 235
Query: 191 ALSKKELEC 199
A+S LE
Sbjct: 236 AISSPLLET 244
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 69 TVTINSKI-IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR 127
T +N+ + I A++ AG Y + L V D+ + ++F V EL+
Sbjct: 121 TNPVNTTVPIAAEVLKKAG---------VYDKRKLFGVTTLDVIRSETF------VAELK 165
Query: 128 AHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ 163
+R+ +IG S + + +S + VEF++++
Sbjct: 166 GQDPGEVRVPVIGGHSGVTILPLLSQVEGVEFSDEE 201
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 22 PDKIDYVFKVVVIGD--SAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIK 78
P+ ++F VVVIG S + +++LS + N +++ +G RT T+ ++ +K
Sbjct: 15 PNLAGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVG----GRTYTVRNEHVK 69
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSI 134
+ + ++WD E + + + Y RGA VY + R+ G + L AHAD+ I
Sbjct: 77 RALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRW-----PGYKVLDAHADAQI 131
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA--------- 79
KV +IGD GK+ +L + F T G+ T+ N K ++
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAP-NIKGLENDDELKECLF 100
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
WD GQE A + + +++ D + + R +E+ + +I++
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP----VIVV 156
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
NK D + + + + E F S NGD V++
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVES 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,658,511
Number of Sequences: 62578
Number of extensions: 214236
Number of successful extensions: 1125
Number of sequences better than 100.0: 363
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 369
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)